BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005905
         (670 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255586885|ref|XP_002534048.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223525928|gb|EEF28334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1129

 Score = 1070 bits (2766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/714 (71%), Positives = 587/714 (82%), Gaps = 45/714 (6%)

Query: 1    MQDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
            +QD   N+ +FPYPNG H+      +EQ+H YNRL+R GR++EC+DLLEDMER+GLLDM 
Sbjct: 415  IQDEHTNLPEFPYPNGVHSTNKDHKAEQVHGYNRLLRDGRLAECVDLLEDMERRGLLDMS 474

Query: 61   KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
            K+YHA+FF +CK QKA+KEAFRF KLVPNP+LSTFNMLMSVC+SS+DS+GAF+VLRL Q 
Sbjct: 475  KIYHAKFFKICKIQKAVKEAFRFCKLVPNPSLSTFNMLMSVCSSSQDSDGAFEVLRLAQG 534

Query: 121  AGLKADCKLYTTLITTCAKSGKVDAMFE-------------------------------- 148
            AGLKADCKLYTTLI+TCAKSGKVDAMFE                                
Sbjct: 535  AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGSLIDGCAKAGQMAK 594

Query: 149  -----------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
                       NVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE HP+DPDHIT+GAL
Sbjct: 595  AFGAYGILRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAETHPIDPDHITVGAL 654

Query: 198  MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            MKACA AGQVDRA+EVY M+HKYNIKGTPEVYTIA+N CSQTGDWEFA SVYDDMT+KGV
Sbjct: 655  MKACAKAGQVDRAKEVYNMLHKYNIKGTPEVYTIAVNFCSQTGDWEFARSVYDDMTRKGV 714

Query: 258  IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             PDE+FLSAL+D AGHAG V+ AFE LQEA+ QG  +GI+ YSSLMGACSNAKNWQKALE
Sbjct: 715  APDEMFLSALVDVAGHAGLVDIAFETLQEARTQGTQLGIVPYSSLMGACSNAKNWQKALE 774

Query: 318  LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
            LYE +K+IKLKPTVSTMNAL+TALCDGDQL K +E LS+MKS GLCPN +TYSILLVA E
Sbjct: 775  LYEDIKAIKLKPTVSTMNALMTALCDGDQLQKALETLSEMKSFGLCPNIVTYSILLVASE 834

Query: 378  RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN 437
            RKDD++ G MLLSQAKED + P  +M+KCIIGMC RRY+KA +L E +LSF+SGRPQI+N
Sbjct: 835  RKDDLDAGDMLLSQAKEDCITPTFLMYKCIIGMCLRRYKKACSLGESILSFDSGRPQIKN 894

Query: 438  KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 497
            +WTS AL VYRE I AG  PT+EVVS+VLGCLQLP +A ++ RLVENLGV+AD  K SNL
Sbjct: 895  EWTSRALTVYRETIAAGEKPTMEVVSQVLGCLQLPCDASLKGRLVENLGVTADPSKFSNL 954

Query: 498  CSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGL 557
            C+L+DGFGEYDPRAFSLLEEAAS G VPC SFKE P+V+DA+ L+ H A+VYLLTILKGL
Sbjct: 955  CALVDGFGEYDPRAFSLLEEAASLGTVPCASFKESPIVMDAKLLQSHIAEVYLLTILKGL 1014

Query: 558  RHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSY 617
            +HRLAAGAKLPN+ ILLP E TQI ++ GEKTI++A R +Q +A+LLRRLGLPYQGN SY
Sbjct: 1015 KHRLAAGAKLPNITILLPTEMTQIKTLKGEKTINLAGRISQDVASLLRRLGLPYQGNESY 1074

Query: 618  GKIRINGLALKRWFQPKLASPFSGKPGELS-SL-QLGKFITHQQRNIRTGNLSL 669
            GKIRING++L+RW QPKLASPFSGKP ELS SL ++GK ITHQQRNIRTGNLSL
Sbjct: 1075 GKIRINGISLRRWLQPKLASPFSGKPEELSFSLSRIGKGITHQQRNIRTGNLSL 1128


>gi|359474892|ref|XP_002276432.2| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
            chloroplastic-like [Vitis vinifera]
          Length = 1115

 Score = 1030 bits (2663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/710 (69%), Positives = 578/710 (81%), Gaps = 45/710 (6%)

Query: 6    KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
            +N+ QFP  NG      +  SE+  +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 406  RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 465

Query: 66   RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            +FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 466  KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 525

Query: 126  DCKLYTTLITTCAKSGKVDAMFE------------------------------------- 148
            DCKLYTTLI+TCAKSGKVDAMFE                                     
Sbjct: 526  DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 585

Query: 149  ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                   V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE  P+DPDHIT+GAL+KAC 
Sbjct: 586  GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 645

Query: 203  NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            NAGQVDRAREVYKMI +YNIKGTPEVYTIA++  SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 646  NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 705

Query: 263  FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
            FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY  +
Sbjct: 706  FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 765

Query: 323  KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK  GLCPNTITYSILLVA E+KDD+
Sbjct: 766  KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 825

Query: 383  EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            +VGLM+LSQA++D V PNLVM +C++GMC RR+EKA  L E VLSFNSGRPQI+NKWTS 
Sbjct: 826  DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 885

Query: 443  ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 502
            ALMVYRE + AG IPT+E++S+VLGCLQ P +  +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 886  ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 945

Query: 503  GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 562
            GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I  A+VYLLT+LKGL+HRLA
Sbjct: 946  GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYLLTVLKGLKHRLA 1005

Query: 563  AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 622
            AGAKLP++ ILLP E TQ+++  GEK I++A R +QA+A++LRRLGLPYQGN S GKIRI
Sbjct: 1006 AGAKLPSMTILLPTETTQVLAPKGEKAINLAGRISQAVASMLRRLGLPYQGNESRGKIRI 1065

Query: 623  NGLALKRWFQPKLASPFSGKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
            NGLA +RWFQPKLA PFSGK  ELSS Q  LG  I+ QQR IRTGNLSL+
Sbjct: 1066 NGLATRRWFQPKLAGPFSGKVDELSSSQSRLGTGISLQQRKIRTGNLSLD 1115


>gi|297744686|emb|CBI37948.3| unnamed protein product [Vitis vinifera]
          Length = 1550

 Score = 1030 bits (2662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/710 (69%), Positives = 578/710 (81%), Gaps = 45/710 (6%)

Query: 6    KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
            +N+ QFP  NG      +  SE+  +YNRL+ +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 841  RNLSQFPLSNGMTVKEKYHDSEKFSAYNRLLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 900

Query: 66   RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            +FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 901  KFFKICRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 960

Query: 126  DCKLYTTLITTCAKSGKVDAMFE------------------------------------- 148
            DCKLYTTLI+TCAKSGKVDAMFE                                     
Sbjct: 961  DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAEVEPNVHTYGALIDGCGRAGQVAKAFGAY 1020

Query: 149  ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                   V+PDRVVFNALITACGQSGAVDRAFDVLAEM AE  P+DPDHIT+GAL+KAC 
Sbjct: 1021 GIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVLAEMRAETQPIDPDHITVGALIKACT 1080

Query: 203  NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            NAGQVDRAREVYKMI +YNIKGTPEVYTIA++  SQ GDWEFA SVY DMT+KGV+PDE+
Sbjct: 1081 NAGQVDRAREVYKMIDQYNIKGTPEVYTIAVSSHSQIGDWEFAYSVYTDMTRKGVVPDEM 1140

Query: 263  FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
            FLSALID AGHAGK++AAFE++QEA+ QGI +GI+SYSSLMGACSNAKNWQKALELY  +
Sbjct: 1141 FLSALIDVAGHAGKLDAAFEVIQEARIQGIPLGIVSYSSLMGACSNAKNWQKALELYVDI 1200

Query: 323  KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            KS+KL PTVSTMNALITALC+G+QL K MEVLSDMK  GLCPNTITYSILLVA E+KDD+
Sbjct: 1201 KSMKLNPTVSTMNALITALCEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDI 1260

Query: 383  EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            +VGLM+LSQA++D V PNLVM +C++GMC RR+EKA  L E VLSFNSGRPQI+NKWTS 
Sbjct: 1261 DVGLMILSQARKDSVAPNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSS 1320

Query: 443  ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 502
            ALMVYRE + AG IPT+E++S+VLGCLQ P +  +R RL+ENLGVSADA +RSNLCSLID
Sbjct: 1321 ALMVYRETVSAGVIPTMELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLID 1380

Query: 503  GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 562
            GFGEYD RAFSLLEEAAS G+V CVSFK+ PV+VD R+L+I  A+VYLLT+LKGL+HRLA
Sbjct: 1381 GFGEYDSRAFSLLEEAASLGVVSCVSFKKSPVIVDTRRLQIRIAEVYLLTVLKGLKHRLA 1440

Query: 563  AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 622
            AGAKLP++ ILLP E TQ+++  GEK I++A R +QA+A++LRRLGLPYQGN S GKIRI
Sbjct: 1441 AGAKLPSMTILLPTETTQVLAPKGEKAINLAGRISQAVASMLRRLGLPYQGNESRGKIRI 1500

Query: 623  NGLALKRWFQPKLASPFSGKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
            NGLA +RWFQPKLA PFSGK  ELSS Q  LG  I+ QQR IRTGNLSL+
Sbjct: 1501 NGLATRRWFQPKLAGPFSGKVDELSSSQSRLGTGISLQQRKIRTGNLSLD 1550


>gi|224080562|ref|XP_002306163.1| predicted protein [Populus trichocarpa]
 gi|222849127|gb|EEE86674.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  983 bits (2542), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/665 (70%), Positives = 549/665 (82%), Gaps = 45/665 (6%)

Query: 51  MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEG 110
           MER+GLLDM+KVYH +FF +C+SQKA+KEAFRF KLV NPTLSTFNMLMSVCA+S++S G
Sbjct: 1   MERRGLLDMNKVYHVKFFKLCRSQKAVKEAFRFCKLVQNPTLSTFNMLMSVCATSQNSAG 60

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---------------------- 148
           AF+VL+L +  GLKADCKLYTTLI+TCAKSGKVDAMFE                      
Sbjct: 61  AFEVLQLAKAVGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEPNVHTYGALID 120

Query: 149 ---------------------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
                                NVKPDRVVFNALITACGQSGAVDRAFDVLAEM  E  P+
Sbjct: 121 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMTGEAQPI 180

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           DPDHIT+GAL+KAC NAGQVDRA+EVY M+HKYNIKGTPEVYTIAIN CSQ GDWEFAC 
Sbjct: 181 DPDHITVGALIKACTNAGQVDRAQEVYNMVHKYNIKGTPEVYTIAINSCSQIGDWEFACK 240

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           V+DDMT+KGV+PDE+FLSALID AGHAGK++AAFEI+QEAK +G  +GII YSSLMGAC 
Sbjct: 241 VFDDMTRKGVVPDEMFLSALIDVAGHAGKMDAAFEIIQEAKAKGAQLGIIPYSSLMGACC 300

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
           NAKNWQK LELYE +KS+K+KPTV+TMNALITALCDGDQLPK +EVLS+MK+ GL PNTI
Sbjct: 301 NAKNWQKGLELYEDIKSMKIKPTVATMNALITALCDGDQLPKALEVLSEMKAWGLRPNTI 360

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 427
           TYSIL VA ERKDD+E GLMLLSQAK+D V P L+M KCII MC R++E A TL E VLS
Sbjct: 361 TYSILSVASERKDDLEAGLMLLSQAKKDCVAPTLIMSKCIISMCLRKFESACTLGEAVLS 420

Query: 428 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 487
           FNSGR QIENKWTS+ALMVYR  + AG  PT+E+VS+VLGCLQ+P +A ++ RLVENLGV
Sbjct: 421 FNSGRAQIENKWTSVALMVYRGTMAAGEKPTIELVSQVLGCLQIPCDATLKNRLVENLGV 480

Query: 488 SADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 547
           +A + + SNLCSL+DGFGEYDPRAFSLLEEAA+ GIVPCVSFKE P+ +DA++L+IH A+
Sbjct: 481 TAVSSRYSNLCSLVDGFGEYDPRAFSLLEEAAALGIVPCVSFKESPITMDAKQLQIHIAE 540

Query: 548 VYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRL 607
           VY LTILKGL+HRLAAGAKLPNV ILLPVEK Q++++ GEKTI++A R ++A+A+LLRRL
Sbjct: 541 VYFLTILKGLKHRLAAGAKLPNVTILLPVEKAQVITLEGEKTINVAGRISRAVASLLRRL 600

Query: 608 GLPYQGNGSYGKIRINGLALKRWFQPKLASPFSGKPGELSS--LQLGKFITHQQRNIRTG 665
           GLPYQGN SYGKIRING++L+RW QPKL SPFSGKPGE S+   +LGK I+ QQRNIRTG
Sbjct: 601 GLPYQGNESYGKIRINGISLRRWLQPKLDSPFSGKPGEWSTSLSRLGKGISFQQRNIRTG 660

Query: 666 NLSLE 670
           + SLE
Sbjct: 661 DFSLE 665


>gi|449458656|ref|XP_004147063.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
            chloroplastic-like [Cucumis sativus]
          Length = 1108

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/711 (64%), Positives = 566/711 (79%), Gaps = 45/711 (6%)

Query: 5    GKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH 64
            GK +   P+PNGKH +Y +   +Q  SYN+ ++ GR+ +CI +L+DME++G+LDM+K+YH
Sbjct: 398  GKVVNGLPHPNGKHVHYKNLDVDQYKSYNQCLKGGRLHDCIRILQDMEKEGILDMNKIYH 457

Query: 65   ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
             +FFN+CKS+KA++EAF++  L+ NPTLSTFNMLMSVCASS+DSE AFQV+RLVQEAG+K
Sbjct: 458  GKFFNICKSKKAVQEAFQYTALIQNPTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMK 517

Query: 125  ADCKLYTTLITTCAKSGKVDAMFE------------------------------------ 148
            ADCKLYTTLI+TC KSGKVDAMFE                                    
Sbjct: 518  ADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGV 577

Query: 149  -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   NVKPDRVVFNALITACGQSGAVDRAFDVLAEM AE+HP++PDHITIGALMKAC
Sbjct: 578  YGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKAC 637

Query: 202  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            ANAGQVDRAREVYKMIH Y IKGTPEVYTIA+NCCSQ+ DW+FA ++Y DMT+KGV PDE
Sbjct: 638  ANAGQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCSQSCDWDFASNIYQDMTRKGVQPDE 697

Query: 262  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
            +FLSALID AGHAGK++AAFE+L EAK  GI VGI+SYSSLMGACSNAKNWQKAL LYE 
Sbjct: 698  IFLSALIDVAGHAGKLDAAFEVLGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYED 757

Query: 322  MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
            +KS+KL+ TVST+NALITAL DG+QL   M++L++MK LGL PN ITYSIL  A +R +D
Sbjct: 758  LKSMKLRLTVSTVNALITALSDGEQLQMAMDILTEMKELGLSPNNITYSILTAASDRNND 817

Query: 382  VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 441
            +E+ LMLLSQAKEDG++P L M++CIIGMC RR     +L+  ++S +S  PQ+++KWT+
Sbjct: 818  LEIALMLLSQAKEDGIVPTLTMYRCIIGMCLRRIADPSSLDRPLMSLDSTLPQVDSKWTA 877

Query: 442  LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLI 501
             AL VYRE I AG +P+++V+S+VLGCLQ+P++  ++ RL+EN+GVSAD+ + S+LCSLI
Sbjct: 878  QALKVYREIIEAGIVPSIDVLSQVLGCLQIPHDPALKSRLIENIGVSADSSRSSSLCSLI 937

Query: 502  DGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRL 561
            DGFGEYDPRAFSL EEAAS G+ P VS K  P+VVDA++L+IHTA+VYLLT+LKGL+HRL
Sbjct: 938  DGFGEYDPRAFSLFEEAASLGVAPFVSLKGNPIVVDAKELQIHTAEVYLLTVLKGLKHRL 997

Query: 562  AAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIR 621
            AAG++LPN+ ILL  E T+I+   GE+TI+++ R  QA+AALLRRLGLPYQGN S GKIR
Sbjct: 998  AAGSRLPNIMILLSNETTEILFSKGERTINLSGRVGQAVAALLRRLGLPYQGNESSGKIR 1057

Query: 622  INGLALKRWFQPKLASPFSGKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
            INGLAL+RW QPKL+   SGKPGE  + Q  L K I+HQQR+IR GNLSL+
Sbjct: 1058 INGLALRRWLQPKLSDSLSGKPGEFGTFQSRLRKGISHQQRDIRIGNLSLD 1108


>gi|357473771|ref|XP_003607170.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508225|gb|AES89367.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1173

 Score =  937 bits (2421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/676 (66%), Positives = 544/676 (80%), Gaps = 45/676 (6%)

Query: 40   RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
            R+ EC++LL+DME KGLLDM KVYHA+FFN+CK QKA+ EAF + +L+PNPTLSTFNMLM
Sbjct: 498  RLCECVELLKDMEMKGLLDMTKVYHAKFFNICKKQKAVNEAFDYVRLIPNPTLSTFNMLM 557

Query: 100  SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----------- 148
            SVCASS+DSEGAFQV++L+++A L  DCKLYTTLI+TC K GKVD MFE           
Sbjct: 558  SVCASSQDSEGAFQVIQLLKDARLDPDCKLYTTLISTCGKCGKVDLMFEVFHKMVNSGVE 617

Query: 149  --------------------------------NVKPDRVVFNALITACGQSGAVDRAFDV 176
                                            NVK DRVVFNALI AC QSGA+ RAFDV
Sbjct: 618  PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKADRVVFNALIAACAQSGAMARAFDV 677

Query: 177  LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
            +AEM AE+ P+ PDH+T G LMKACA AGQV+RAREVYKMI +YNIKG+ EVYTIAIN C
Sbjct: 678  IAEMEAEIQPIVPDHVTFGTLMKACAKAGQVERAREVYKMIQQYNIKGSSEVYTIAINSC 737

Query: 237  SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            SQTGDWEFA SVYDDMT+KGV+PDE+F+SALID AGHA K+EAAF+ILQ+A+ +G+ +GI
Sbjct: 738  SQTGDWEFARSVYDDMTQKGVLPDEMFMSALIDVAGHAKKLEAAFDILQQARKEGVQIGI 797

Query: 297  ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
            ++YSSLMGACS AKNWQ+ALELYE++KS+KL  TVST+NAL+TALCDGDQ  K +EVLS+
Sbjct: 798  MTYSSLMGACSKAKNWQRALELYEYLKSLKLVQTVSTVNALLTALCDGDQFQKALEVLSE 857

Query: 357  MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
            MK LGLCPN+IT+SIL+VA E+KDD+E   MLLSQAK+DG  P L+M +CIIGMC RR+E
Sbjct: 858  MKGLGLCPNSITFSILIVASEKKDDMEAAQMLLSQAKKDGAAPTLIMCRCIIGMCLRRFE 917

Query: 417  KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 476
            KA  + E VLSF+SGRPQ+ N+WTSLALMVYRE I AG  PT +++S+VLGCL+ PY+  
Sbjct: 918  KACLVGETVLSFDSGRPQVNNEWTSLALMVYRETIGAGEKPTSQILSQVLGCLKFPYDTY 977

Query: 477  IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 536
            +R RLVENLGV+A++ K SNLCSLIDGFGEYDPRAFS+LEEAAS+G+VP VS K  P+V+
Sbjct: 978  VRNRLVENLGVTAESSKTSNLCSLIDGFGEYDPRAFSILEEAASYGVVPSVSLKMNPIVI 1037

Query: 537  DARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERT 596
            DA++L+  TA+VYLLTILKGL+HRLAAGAKLPN+ ILLPVE+T+++S  GEKTI +AER 
Sbjct: 1038 DAKELDAFTAEVYLLTILKGLKHRLAAGAKLPNIIILLPVEETKLLSPEGEKTIILAERG 1097

Query: 597  TQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASPFSGKPGELSS--LQLGKF 654
             QA+AAL RRL +PYQG+ S GK+RIN L L +W+QPKLASPF G  G+ SS  L+LGK 
Sbjct: 1098 GQAVAALFRRLHIPYQGSESNGKLRINSLGLIKWYQPKLASPFGGFQGDWSSTQLRLGKN 1157

Query: 655  ITHQQRNIRTGNLSLE 670
            I++QQRNIRTGNLSL+
Sbjct: 1158 ISNQQRNIRTGNLSLD 1173


>gi|356529805|ref|XP_003533478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
            chloroplastic-like [Glycine max]
          Length = 1092

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/685 (65%), Positives = 547/685 (79%), Gaps = 54/685 (7%)

Query: 40   RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
            R+ EC++LL+DME KGLLDM KVYHA+FFN+CK +KA+KEAF F +L+PNP LSTFNMLM
Sbjct: 408  RLHECVELLKDMETKGLLDMTKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLM 467

Query: 100  SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----------- 148
            SVCASS+DSEGAFQVL+L+++A L+ DCKLYTTLI TCAKSGKVD MFE           
Sbjct: 468  SVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVE 527

Query: 149  --------------------------------NVKPDRVVFNALITACGQSGAVDRAFDV 176
                                            NVKPDRVVFNALI AC QSGA+DRAFDV
Sbjct: 528  PNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGALDRAFDV 587

Query: 177  LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
            LAEM AE  P+DPDH+TIGAL+KAC  AGQV+RA+EVYKM+ KYNIKG PEVYTIAIN C
Sbjct: 588  LAEMTAETQPIDPDHVTIGALLKACTKAGQVERAKEVYKMVQKYNIKGCPEVYTIAINSC 647

Query: 237  SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            SQTGDWEFA +VY+DMT+KG++PDE+FLSALID AGHA K++AAF++LQEA+  GI +GI
Sbjct: 648  SQTGDWEFAHTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEARKGGILIGI 707

Query: 297  ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
            +SYSSLMGACSNA+NWQKALELYE++KS+KL  TVST+NAL+TALCDGDQ  K +EVL +
Sbjct: 708  MSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFE 767

Query: 357  MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
            MK LGL PN+IT+SIL+VA E+KDD+E   MLLS AK+DGV+PNL+M +CIIGMC RR+E
Sbjct: 768  MKGLGLRPNSITFSILIVASEKKDDMEAAQMLLSLAKKDGVVPNLIMCRCIIGMCQRRFE 827

Query: 417  KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 476
            KA  + E VLSF+SGRPQ++NKWTSLALMVYRE I AG  PT E++S++LGCLQLPY+  
Sbjct: 828  KACFVGEPVLSFDSGRPQVDNKWTSLALMVYRETIEAGEKPTSEILSQILGCLQLPYDTS 887

Query: 477  IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 536
            ++ RLVENLGVS +  + SNLCSL+DGFGEYDPRAFS+LEE+AS G+VP VS K  PVV+
Sbjct: 888  VKNRLVENLGVSMETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSLKVSPVVI 947

Query: 537  DARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERT 596
            DA++L   TA+VYL+T+LKGL+HRLAAGA+LPN+ ILLPVEKT+++S   +K I++  R 
Sbjct: 948  DAKELNASTAEVYLITVLKGLKHRLAAGARLPNIIILLPVEKTEVVSPKWKKNINLGGRA 1007

Query: 597  TQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASP---------FSGKPGELS 647
             QA+ ALLRRL +P+QG+ S GK+RI GLALK+WFQPKLA P         FSGKPG+ +
Sbjct: 1008 GQAVGALLRRLQIPHQGSESNGKLRIGGLALKKWFQPKLAYPFSVNMGSPTFSGKPGDWN 1067

Query: 648  S--LQLGKFITHQQRNIRTGNLSLE 670
            S   +LGK I++QQRNIRTGNLSL+
Sbjct: 1068 SSLSRLGKSISNQQRNIRTGNLSLD 1092



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/174 (20%), Positives = 75/174 (43%), Gaps = 11/174 (6%)

Query: 254 KKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAK 310
           K+G  P   E  +   IDF     ++    E+L++ + +G+  +  + ++     C   K
Sbjct: 388 KEGYPPQHLEELIPKYIDFV----RLHECVELLKDMETKGLLDMTKVYHAKFFNICKKRK 443

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             ++A +    + +    P +ST N L++            +VL  +K   L P+   Y+
Sbjct: 444 AVKEAFDFIRLIPN----PMLSTFNMLMSVCASSQDSEGAFQVLQLLKDARLEPDCKLYT 499

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 424
            L++ C +   V++   +  +    GV PN+  +  +I  C+R  + A+    +
Sbjct: 500 TLILTCAKSGKVDLMFEVFHKMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAY 553


>gi|356544435|ref|XP_003540656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
            chloroplastic-like [Glycine max]
          Length = 1071

 Score =  928 bits (2398), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/685 (64%), Positives = 545/685 (79%), Gaps = 54/685 (7%)

Query: 40   RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
            R+ EC++LL+DME KGLLDM KVYHA+FFN+CK +KA+KEAF F +L+PNP LSTFNMLM
Sbjct: 387  RLHECVELLKDMETKGLLDMSKVYHAKFFNICKKRKAVKEAFDFIRLIPNPMLSTFNMLM 446

Query: 100  SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----------- 148
            SVCASS+DSEGAFQVL+L+++A L+ DCKLYTTLI TCAKSGKVD MFE           
Sbjct: 447  SVCASSQDSEGAFQVLQLLKDARLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVE 506

Query: 149  --------------------------------NVKPDRVVFNALITACGQSGAVDRAFDV 176
                                            NVKPDRVVFNALI AC QSGAVDRAFDV
Sbjct: 507  PNVHTYGALIGGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDV 566

Query: 177  LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
            LAEM AE  P+DPDH+TIGAL+KAC  AGQV+RA+EVYKM+ KYNIKG PEVYTIAIN C
Sbjct: 567  LAEMAAETQPIDPDHVTIGALLKACTKAGQVERAQEVYKMVQKYNIKGCPEVYTIAINSC 626

Query: 237  SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            SQTGDWE+A +VY+DMT+KG++PDE+FLSALID AGHA K++AAF++LQEA   GI +GI
Sbjct: 627  SQTGDWEYARTVYNDMTQKGILPDEIFLSALIDVAGHAKKLDAAFDVLQEAHKGGIQIGI 686

Query: 297  ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
            +SYSSLMGACSNA+NWQKALELYE++KS+KL  TVST+NAL+TALCDGDQ  K +EVL +
Sbjct: 687  MSYSSLMGACSNARNWQKALELYEYLKSLKLTITVSTVNALLTALCDGDQFQKALEVLFE 746

Query: 357  MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
            MK LGL PN+IT+SIL+VA E+KDD+E   M+LS AK+DGV PNL+M +CIIGMC RRYE
Sbjct: 747  MKGLGLSPNSITFSILIVASEKKDDMEAAQMILSLAKKDGVAPNLIMCRCIIGMCQRRYE 806

Query: 417  KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 476
            KA  + E VLSF+SGRP ++NKWTSLALMVYRE I AG  PT E++ ++LGCLQLPY+  
Sbjct: 807  KACFVGEPVLSFDSGRPLVDNKWTSLALMVYRETIEAGGKPTSEILPQILGCLQLPYDTS 866

Query: 477  IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVV 536
            ++ RLVENLGV A+  + SNLCSL+DGFGEYDPRAFS+LEE+AS G+VP VSFK  P+V+
Sbjct: 867  VKNRLVENLGVRAETSRSSNLCSLMDGFGEYDPRAFSILEESASHGVVPSVSFKVSPIVI 926

Query: 537  DARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERT 596
            DA++L   TA+VY++T+LKGL++RLAAGA+LPN+ ILLPVE+T+++S  G+K I++  R 
Sbjct: 927  DAKELHASTAEVYIITVLKGLKYRLAAGARLPNIIILLPVEETEVVSPKGKKIINLGGRA 986

Query: 597  TQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASP---------FSGKPGELS 647
             QA+ ALLRRL +P+QG+ S GK+RI GLALK+WFQPKLASP         FSGKPG+ +
Sbjct: 987  GQAVGALLRRLQIPHQGSESNGKLRIGGLALKKWFQPKLASPFSVNMGSPTFSGKPGDWN 1046

Query: 648  S--LQLGKFITHQQRNIRTGNLSLE 670
            S   +LGK I++QQRNIR GNLSL+
Sbjct: 1047 SSLSRLGKNISNQQRNIRIGNLSLD 1071


>gi|110741791|dbj|BAE98839.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1089

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/711 (62%), Positives = 545/711 (76%), Gaps = 48/711 (6%)

Query: 6    KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
            ++M QFP  N +  N      E   +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381  ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440

Query: 66   RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
             FF  CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA  VLRLVQE+G+ A
Sbjct: 441  SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500

Query: 126  DCKLYTTLITTCAKSGKVDAMFE------------------------------------- 148
            DCKLYTTLI++CAKSGKVDAMFE                                     
Sbjct: 501  DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560

Query: 149  ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  NVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC 
Sbjct: 561  GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620

Query: 203  NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621  NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680

Query: 263  FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
            F SALID AGHA  ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681  FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740

Query: 323  KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD 
Sbjct: 741  KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800

Query: 383  EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            EV   LLSQAK DGV PNL+M +CI  +C RR+EKA    E V+SF SGRPQIENKWTS+
Sbjct: 801  EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860

Query: 443  ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 502
            ALMVYRE I  GT+PT EVVS+VLGCLQLP++A +R+RL+  LG++  + K+ N+  L+D
Sbjct: 861  ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920

Query: 503  GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 562
            GFGEYDPRAFSLLEEA S G++P VSF +IP+  D  +L  + A+VYLLTI KGL+HRLA
Sbjct: 921  GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980

Query: 563  AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 622
            AGAK+P++N+++ +++ +I +  GEKTID+  R  Q I ALLRRL +PY    S  ++RI
Sbjct: 981  AGAKIPHINLIISIQEKEIRTPEGEKTIDLTGRVGQEIGALLRRLDIPYHRKDS--RLRI 1038

Query: 623  NGLALKRWFQPKLASPFS-GKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
            NG++LK WFQPKL SPFS GKPG+L S Q  LG  I+ QQR+IR GNLSLE
Sbjct: 1039 NGVSLKNWFQPKLDSPFSGGKPGDLRSSQVPLGNQISRQQRSIRLGNLSLE 1089


>gi|110740372|dbj|BAF02081.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1089

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/711 (62%), Positives = 545/711 (76%), Gaps = 48/711 (6%)

Query: 6    KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
            ++M QFP  N +  N      E   +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381  ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440

Query: 66   RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
             FF  CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA  VLRLVQE+G+ A
Sbjct: 441  SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500

Query: 126  DCKLYTTLITTCAKSGKVDAMFE------------------------------------- 148
            DCKLYTTLI++CAKSGKVDAMFE                                     
Sbjct: 501  DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560

Query: 149  ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  NVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC 
Sbjct: 561  GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620

Query: 203  NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621  NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680

Query: 263  FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
            F SALID AGHA  ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681  FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740

Query: 323  KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD 
Sbjct: 741  KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800

Query: 383  EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            EV   LLSQAK DGV PNL+M +CI  +C RR+EKA    E V+SF SGRPQIENKWTS+
Sbjct: 801  EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860

Query: 443  ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 502
            ALMVYRE I  GT+PT EVVS+VLGCLQLP++A +R+RL+  LG++  + K+ N+  L+D
Sbjct: 861  ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920

Query: 503  GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 562
            GFGEYDPRAFSLLEEA S G++P VSF +IP+  D  +L  + A+VYLLTI KGL+HRLA
Sbjct: 921  GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980

Query: 563  AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 622
            AGAK+P++N+++ +++ +I +  GEKTID+  R  Q I ALLRRL +PY    S  ++RI
Sbjct: 981  AGAKIPHINLIISIQEKEIRTPEGEKTIDLTGRVGQEIGALLRRLDIPYHRKDS--RLRI 1038

Query: 623  NGLALKRWFQPKLASPFS-GKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
            NG++LK WFQPKL SPFS GKPG+L S Q  LG  I+ QQR+IR GNLSLE
Sbjct: 1039 NGVSLKNWFQPKLDSPFSGGKPGDLRSSQVPLGNQISRQQRSIRLGNLSLE 1089


>gi|145353124|ref|NP_195209.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635623|sp|Q0WLC6.2|PP349_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g34830,
            chloroplastic; Flags: Precursor
 gi|332661026|gb|AEE86426.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1089

 Score =  924 bits (2387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/711 (62%), Positives = 545/711 (76%), Gaps = 48/711 (6%)

Query: 6    KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
            ++M QFP  N +  N      E   +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381  ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440

Query: 66   RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
             FF  CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA  VLRLVQE+G+ A
Sbjct: 441  SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500

Query: 126  DCKLYTTLITTCAKSGKVDAMFE------------------------------------- 148
            DCKLYTTLI++CAKSGKVDAMFE                                     
Sbjct: 501  DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560

Query: 149  ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  NVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC 
Sbjct: 561  GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620

Query: 203  NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621  NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680

Query: 263  FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
            F SALID AGHA  ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681  FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740

Query: 323  KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD 
Sbjct: 741  KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800

Query: 383  EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            EV   LLSQAK DGV PNL+M +CI  +C RR+EKA    E V+SF SGRPQIENKWTS+
Sbjct: 801  EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860

Query: 443  ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 502
            ALMVYRE I  GT+PT EVVS+VLGCLQLP++A +R+RL+  LG++  + K+ N+  L+D
Sbjct: 861  ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920

Query: 503  GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 562
            GFGEYDPRAFSLLEEA S G++P VSF +IP+  D  +L  + A+VYLLTI KGL+HRLA
Sbjct: 921  GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980

Query: 563  AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 622
            AGAK+P++N+++ +++ +I +  GEKTID+  R  Q I ALLRRL +PY    S  ++RI
Sbjct: 981  AGAKIPHINLIISIQEKEIRTPEGEKTIDLTGRVGQEIGALLRRLDIPYHRKDS--RLRI 1038

Query: 623  NGLALKRWFQPKLASPFS-GKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
            NG++LK WFQPKL SPFS GKPG+L S Q  LG  I+ QQR+IR GNLSLE
Sbjct: 1039 NGVSLKNWFQPKLDSPFSGGKPGDLRSSQVPLGNQISRQQRSIRLGNLSLE 1089


>gi|297798436|ref|XP_002867102.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297312938|gb|EFH43361.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1094

 Score =  919 bits (2375), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/711 (62%), Positives = 543/711 (76%), Gaps = 48/711 (6%)

Query: 6    KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
            ++M QF   N +  N      E   +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 386  ESMPQFHARNFELHNSNGRSPESNDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 445

Query: 66   RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
             FF  CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA  VLRLVQE+G+ A
Sbjct: 446  SFFKTCKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 505

Query: 126  DCKLYTTLITTCAKSGKVDAMFE------------------------------------- 148
            DCKLYTTLI++CAKSGKVDAMFE                                     
Sbjct: 506  DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 565

Query: 149  ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  NVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHITIGALMKAC 
Sbjct: 566  GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITIGALMKACC 625

Query: 203  NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 626  NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 685

Query: 263  FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
            F SALID AGHA  ++ AF ILQ+AK+QGI +G +SYSSLMGAC NAK+W+KALELYE +
Sbjct: 686  FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTVSYSSLMGACCNAKDWKKALELYEKI 745

Query: 323  KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            K IKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD 
Sbjct: 746  KLIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 805

Query: 383  EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            EV   LLSQAKEDG+ PN +M +CI  +C RR+EKA    E V+SF SGRPQIENKWTS+
Sbjct: 806  EVSFKLLSQAKEDGISPNFIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 865

Query: 443  ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 502
            ALMVYRE I  GT+PT EVVS+VLGCLQLP++A +R+RL+ NL ++  + K+ N+  L+D
Sbjct: 866  ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISNLSINISSQKQHNIFPLVD 925

Query: 503  GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 562
            GFGEYDPRAFSLLEEA S G++P VSF +IP+  D  +L  + A+VYLLTI KGL+HRLA
Sbjct: 926  GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 985

Query: 563  AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 622
            AGAK+P++N+++ +E+ +I +  GEKTID+  R  Q I ALLRRL +PY    S  ++RI
Sbjct: 986  AGAKIPHINLIISMEEKEIRTPEGEKTIDLTGRVGQEIGALLRRLDIPYHRKDS--RLRI 1043

Query: 623  NGLALKRWFQPKLASPFS-GKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
            NG++LK WFQPKL SPFS GKPG+L S Q  LG  I+ QQR+IR GNLSLE
Sbjct: 1044 NGVSLKNWFQPKLDSPFSGGKPGDLRSSQVPLGNQISRQQRSIRLGNLSLE 1094


>gi|110288710|gb|AAP52447.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215694798|dbj|BAG89989.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 735

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/722 (55%), Positives = 505/722 (69%), Gaps = 60/722 (8%)

Query: 7   NMLQFPYP-NGKHANYA-----HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
           N+L    P N   AN A      DV + L  YN L+  GR+ + +DLLE ME+KGLLDM+
Sbjct: 16  NLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMN 75

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           K++HA F N CK Q+A+ EA RF KL+ NP +STFNML+SVCA+S+D +GA QV+ L++E
Sbjct: 76  KIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKE 135

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFE-------------------------------- 148
           AGLK DCKLYTTLI+TCAK GKVDAMFE                                
Sbjct: 136 AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAK 195

Query: 149 -----------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDH 191
                       VKPDRVVFNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH
Sbjct: 196 AFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDH 255

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+D
Sbjct: 256 VTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYED 315

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+
Sbjct: 316 MNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKD 375

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+
Sbjct: 376 WKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSV 435

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 431
           L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V++FN G
Sbjct: 436 LFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIVVTFNLG 495

Query: 432 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 491
           +PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+G+S D 
Sbjct: 496 KPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDI 555

Query: 492 LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLL 551
               N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+TA+V +L
Sbjct: 556 PHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVSVL 615

Query: 552 TILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPY 611
           T L+ L+HRLAAGA+LPNV ILLP EK Q+     EKT+ +A R  QA+ +LLRRLG+ Y
Sbjct: 616 TTLRSLKHRLAAGARLPNVTILLPTEKKQVGLDEREKTLKLAGRVGQAVGSLLRRLGIKY 675

Query: 612 QGNGSYGKIRINGLALKRWFQPKLASPFS-GKPGELSSL--QLGKFITHQQRNIRTGNLS 668
            G  S+GK+RINGL L+RWF PKL S  S G P +L  L  +L K I  QQRNIR  NLS
Sbjct: 676 HGEESHGKMRINGLTLRRWFNPKLTSTSSTGTPADLLPLPSRLAKGIADQQRNIR--NLS 733

Query: 669 LE 670
           LE
Sbjct: 734 LE 735


>gi|215694797|dbj|BAG89988.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 930

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/722 (55%), Positives = 505/722 (69%), Gaps = 60/722 (8%)

Query: 7   NMLQFPYP-NGKHANYA-----HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
           N+L    P N   AN A      DV + L  YN L+  GR+ + +DLLE ME+KGLLDM+
Sbjct: 211 NLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMN 270

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           K++HA F N CK Q+A+ EA RF KL+ NP +STFNML+SVCA+S+D +GA QV+ L++E
Sbjct: 271 KIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKE 330

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFE-------------------------------- 148
           AGLK DCKLYTTLI+TCAK GKVDAMFE                                
Sbjct: 331 AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAK 390

Query: 149 -----------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDH 191
                       VKPDRVVFNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH
Sbjct: 391 AFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDH 450

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+D
Sbjct: 451 VTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYED 510

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+
Sbjct: 511 MNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKD 570

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+
Sbjct: 571 WKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSV 630

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 431
           L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V++FN G
Sbjct: 631 LFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIVVTFNLG 690

Query: 432 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 491
           +PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+G+S D 
Sbjct: 691 KPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDI 750

Query: 492 LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLL 551
               N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+TA+V +L
Sbjct: 751 PHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVSVL 810

Query: 552 TILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPY 611
           T L+ L+HRLAAGA+LPNV ILLP EK Q+     EKT+ +A R  QA+ +LLRRLG+ Y
Sbjct: 811 TTLRSLKHRLAAGARLPNVTILLPTEKKQVGLDEREKTLKLAGRVGQAVGSLLRRLGIKY 870

Query: 612 QGNGSYGKIRINGLALKRWFQPKLASPFS-GKPGELSSL--QLGKFITHQQRNIRTGNLS 668
            G  S+GK+RINGL L+RWF PKL S  S G P +L  L  +L K I  QQRNIR  NLS
Sbjct: 871 HGEESHGKMRINGLTLRRWFNPKLTSTSSTGTPADLLPLPSRLAKGIADQQRNIR--NLS 928

Query: 669 LE 670
           LE
Sbjct: 929 LE 930


>gi|115481316|ref|NP_001064251.1| Os10g0181200 [Oryza sativa Japonica Group]
 gi|113638860|dbj|BAF26165.1| Os10g0181200, partial [Oryza sativa Japonica Group]
          Length = 1021

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/722 (55%), Positives = 505/722 (69%), Gaps = 60/722 (8%)

Query: 7    NMLQFPYP-NGKHANYA-----HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
            N+L    P N   AN A      DV + L  YN L+  GR+ + +DLLE ME+KGLLDM+
Sbjct: 302  NLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMN 361

Query: 61   KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
            K++HA F N CK Q+A+ EA RF KL+ NP +STFNML+SVCA+S+D +GA QV+ L++E
Sbjct: 362  KIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKE 421

Query: 121  AGLKADCKLYTTLITTCAKSGKVDAMFE-------------------------------- 148
            AGLK DCKLYTTLI+TCAK GKVDAMFE                                
Sbjct: 422  AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAK 481

Query: 149  -----------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDH 191
                        VKPDRVVFNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH
Sbjct: 482  AFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDH 541

Query: 192  ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
            +T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+D
Sbjct: 542  VTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYED 601

Query: 252  MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
            M K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+
Sbjct: 602  MNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKD 661

Query: 312  WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+
Sbjct: 662  WKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSV 721

Query: 372  LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 431
            L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V++FN G
Sbjct: 722  LFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIVVTFNLG 781

Query: 432  RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 491
            +PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+G+S D 
Sbjct: 782  KPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDI 841

Query: 492  LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLL 551
                N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+TA+V +L
Sbjct: 842  PHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVSVL 901

Query: 552  TILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPY 611
            T L+ L+HRLAAGA+LPNV ILLP EK Q+     EKT+ +A R  QA+ +LLRRLG+ Y
Sbjct: 902  TTLRSLKHRLAAGARLPNVTILLPTEKKQVGLDEREKTLKLAGRVGQAVGSLLRRLGIKY 961

Query: 612  QGNGSYGKIRINGLALKRWFQPKLASPFS-GKPGELSSL--QLGKFITHQQRNIRTGNLS 668
             G  S+GK+RINGL L+RWF PKL S  S G P +L  L  +L K I  QQRNIR  NLS
Sbjct: 962  HGEESHGKMRINGLTLRRWFNPKLTSTSSTGTPADLLPLPSRLAKGIADQQRNIR--NLS 1019

Query: 669  LE 670
            LE
Sbjct: 1020 LE 1021


>gi|125531299|gb|EAY77864.1| hypothetical protein OsI_32907 [Oryza sativa Indica Group]
          Length = 1089

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/722 (55%), Positives = 505/722 (69%), Gaps = 60/722 (8%)

Query: 7    NMLQFPYP-NGKHANYA-----HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
            N+L    P N   AN A      DV + L  YN L+  GR+ + +DLLE ME+KGLLDM+
Sbjct: 370  NLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMN 429

Query: 61   KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
            K++HA F N CK Q+A+ EA RF KL+ NP +STFNML+SVCA+S+D +GA QV+ L++E
Sbjct: 430  KIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKE 489

Query: 121  AGLKADCKLYTTLITTCAKSGKVDAMFE-------------------------------- 148
            AGLK DCKLYTTLI+TCAK GKVDAMFE                                
Sbjct: 490  AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAK 549

Query: 149  -----------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDH 191
                        VKPDRVVFNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH
Sbjct: 550  AFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDH 609

Query: 192  ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
            +T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+D
Sbjct: 610  VTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYED 669

Query: 252  MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
            M K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+
Sbjct: 670  MNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKD 729

Query: 312  WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+
Sbjct: 730  WKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSV 789

Query: 372  LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 431
            L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V++FN G
Sbjct: 790  LFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIVVTFNLG 849

Query: 432  RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 491
            +PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+G+S D 
Sbjct: 850  KPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDI 909

Query: 492  LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLL 551
                N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+TA+V +L
Sbjct: 910  PHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVSVL 969

Query: 552  TILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPY 611
            T L+ L+HRLAAGA+LPNV ILLP EK Q+     EKT+ +A R  QA+ +LLRRLG+ Y
Sbjct: 970  TTLRSLKHRLAAGARLPNVTILLPTEKKQVGLDEREKTLKLAGRVGQAVGSLLRRLGIKY 1029

Query: 612  QGNGSYGKIRINGLALKRWFQPKLASPFS-GKPGELSSL--QLGKFITHQQRNIRTGNLS 668
             G  S+GK+RINGL L+RWF PKL S  S G P +L  L  +L K I  QQRNIR  NLS
Sbjct: 1030 HGEESHGKMRINGLTLRRWFNPKLTSTSSTGTPADLLPLPSRLAKGIADQQRNIR--NLS 1087

Query: 669  LE 670
            LE
Sbjct: 1088 LE 1089


>gi|18642701|gb|AAL76193.1|AC092173_5 Putative crp1 protein [Oryza sativa Japonica Group]
          Length = 1089

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/722 (55%), Positives = 505/722 (69%), Gaps = 60/722 (8%)

Query: 7    NMLQFPYP-NGKHANYA-----HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
            N+L    P N   AN A      DV + L  YN L+  GR+ + +DLLE ME+KGLLDM+
Sbjct: 370  NLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMN 429

Query: 61   KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
            K++HA F N CK Q+A+ EA RF KL+ NP +STFNML+SVCA+S+D +GA QV+ L++E
Sbjct: 430  KIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKE 489

Query: 121  AGLKADCKLYTTLITTCAKSGKVDAMFE-------------------------------- 148
            AGLK DCKLYTTLI+TCAK GKVDAMFE                                
Sbjct: 490  AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAK 549

Query: 149  -----------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDH 191
                        VKPDRVVFNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH
Sbjct: 550  AFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDH 609

Query: 192  ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
            +T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+D
Sbjct: 610  VTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYED 669

Query: 252  MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
            M K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+
Sbjct: 670  MNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKD 729

Query: 312  WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+
Sbjct: 730  WKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSV 789

Query: 372  LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 431
            L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V++FN G
Sbjct: 790  LFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIVVTFNLG 849

Query: 432  RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 491
            +PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+G+S D 
Sbjct: 850  KPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDI 909

Query: 492  LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLL 551
                N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+TA+V +L
Sbjct: 910  PHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVSVL 969

Query: 552  TILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPY 611
            T L+ L+HRLAAGA+LPNV ILLP EK Q+     EKT+ +A R  QA+ +LLRRLG+ Y
Sbjct: 970  TTLRSLKHRLAAGARLPNVTILLPTEKKQVGLDEREKTLKLAGRVGQAVGSLLRRLGIKY 1029

Query: 612  QGNGSYGKIRINGLALKRWFQPKLASPFS-GKPGELSSL--QLGKFITHQQRNIRTGNLS 668
             G  S+GK+RINGL L+RWF PKL S  S G P +L  L  +L K I  QQRNIR  NLS
Sbjct: 1030 HGEESHGKMRINGLTLRRWFNPKLTSTSSTGTPADLLPLPSRLAKGIADQQRNIR--NLS 1087

Query: 669  LE 670
            LE
Sbjct: 1088 LE 1089


>gi|222612526|gb|EEE50658.1| hypothetical protein OsJ_30888 [Oryza sativa Japonica Group]
          Length = 869

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/722 (55%), Positives = 505/722 (69%), Gaps = 60/722 (8%)

Query: 7   NMLQFPYP-NGKHANYA-----HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
           N+L    P N   AN A      DV + L  YN L+  GR+ + +DLLE ME+KGLLDM+
Sbjct: 150 NLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMN 209

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           K++HA F N CK Q+A+ EA RF KL+ NP +STFNML+SVCA+S+D +GA QV+ L++E
Sbjct: 210 KIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKE 269

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFE-------------------------------- 148
           AGLK DCKLYTTLI+TCAK GKVDAMFE                                
Sbjct: 270 AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAK 329

Query: 149 -----------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDH 191
                       VKPDRVVFNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH
Sbjct: 330 AFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDH 389

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+D
Sbjct: 390 VTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYED 449

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+
Sbjct: 450 MNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKD 509

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+
Sbjct: 510 WKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSV 569

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 431
           L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V++FN G
Sbjct: 570 LFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIVVTFNLG 629

Query: 432 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 491
           +PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+G+S D 
Sbjct: 630 KPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDI 689

Query: 492 LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLL 551
               N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+TA+V +L
Sbjct: 690 PHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVSVL 749

Query: 552 TILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPY 611
           T L+ L+HRLAAGA+LPNV ILLP EK Q+     EKT+ +A R  QA+ +LLRRLG+ Y
Sbjct: 750 TTLRSLKHRLAAGARLPNVTILLPTEKKQVGLDEREKTLKLAGRVGQAVGSLLRRLGIKY 809

Query: 612 QGNGSYGKIRINGLALKRWFQPKLASPFS-GKPGELSSL--QLGKFITHQQRNIRTGNLS 668
            G  S+GK+RINGL L+RWF PKL S  S G P +L  L  +L K I  QQRNIR  NLS
Sbjct: 810 HGEESHGKMRINGLTLRRWFNPKLTSTSSTGTPADLLPLPSRLAKGIADQQRNIR--NLS 867

Query: 669 LE 670
           LE
Sbjct: 868 LE 869


>gi|147781878|emb|CAN69936.1| hypothetical protein VITISV_038780 [Vitis vinifera]
          Length = 1206

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/574 (66%), Positives = 448/574 (78%), Gaps = 44/574 (7%)

Query: 121  AGLKADCKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDR 172
            A ++ +   Y  LI  C ++G+V   F        + V+PDRVVFNALITACGQSGAVDR
Sbjct: 653  AEVEPNVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALITACGQSGAVDR 712

Query: 173  AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
            AFDVLAEM AE  P+DPDHIT+GAL+KAC NAG                     EVYTIA
Sbjct: 713  AFDVLAEMRAETQPIDPDHITVGALIKACTNAGS--------------------EVYTIA 752

Query: 233  INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
            +N  SQ GDWEFA SVY DMT+KGV+PDE+FLSALID AGHAGK++AAFE++QEA+ QGI
Sbjct: 753  VNSHSQIGDWEFAYSVYTDMTRKGVVPDEMFLSALIDVAGHAGKLDAAFEVIQEARIQGI 812

Query: 293  SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC---------- 342
             +GI+SYSSLMGACSNAKNWQKALELY  +KS+KL PTVSTMNALITAL           
Sbjct: 813  PLGIVSYSSLMGACSNAKNWQKALELYVDIKSMKLNPTVSTMNALITALSKIGLRNHMNS 872

Query: 343  ----DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
                +G+QL K MEVLSDMK  GLCPNTITYSILLVA E+KDD++VGLM+LSQA++D V 
Sbjct: 873  STTGEGEQLEKAMEVLSDMKRAGLCPNTITYSILLVASEKKDDIDVGLMILSQARKDSVA 932

Query: 399  PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPT 458
            PNLVM +C++GMC RR+EKA  L E VLSFNSGRPQI+NKWTS ALMVYRE + AG IPT
Sbjct: 933  PNLVMCRCLVGMCLRRFEKACALGEPVLSFNSGRPQIDNKWTSSALMVYRETVSAGVIPT 992

Query: 459  VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEA 518
            +E++S+VLGCLQ P +  +R RL+ENLGVSADA +RSNLCSLIDGFGEYD RAFSLLEEA
Sbjct: 993  MELLSQVLGCLQFPRDVSLRNRLIENLGVSADASRRSNLCSLIDGFGEYDSRAFSLLEEA 1052

Query: 519  ASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEK 578
            AS G+V CVSFK+ PV+VD R L+I  A+VYLLT+LKGL+HRLAAGAKLP++ +LLP E 
Sbjct: 1053 ASLGVVSCVSFKKSPVIVDTRXLQIRIAEVYLLTVLKGLKHRLAAGAKLPSMTVLLPTET 1112

Query: 579  TQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASP 638
            TQ+++  GEK I++A R +QA+A++LRRLGLPYQGN S GKIRINGLA +RW QPKLA P
Sbjct: 1113 TQVLAPKGEKAINLAGRISQAVASMLRRLGLPYQGNESRGKIRINGLAXRRWXQPKLAGP 1172

Query: 639  FSGKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
            FSGK  ELSS Q  LG  I+ QQR IRTGNLSL+
Sbjct: 1173 FSGKVDELSSSQSRLGTGISLQQRKIRTGNLSLD 1206



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 150/431 (34%), Positives = 215/431 (49%), Gaps = 76/431 (17%)

Query: 6   KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
           +N+ QFP  NG      +  SE+  +YNR + +GR+S+CI LLEDME+ GLLDMDKVYHA
Sbjct: 406 RNLSQFPLSNGMTVKEKYHDSEKFSAYNRXLSEGRLSDCIQLLEDMEKMGLLDMDKVYHA 465

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           +FF +C+SQKA+ EAFRF KL+P PTLSTFNMLMSVCA+S+DS GAFQVL+LV+EAGLKA
Sbjct: 466 KFFKJCRSQKAVTEAFRFAKLIPTPTLSTFNMLMSVCATSQDSAGAFQVLQLVREAGLKA 525

Query: 126 DCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           DCKLYTTLI+T                           C +SG VD  F++       +H
Sbjct: 526 DCKLYTTLIST---------------------------CAKSGKVDAMFEL-----PSIH 553

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD---- 241
           P++           AC    ++   R    +  K ++  TP  Y + +    +  +    
Sbjct: 554 PLN---------TAACFICIKIVNIRSXMGISDK-DLTLTPLAYLVDVGMLGKVEESRGF 603

Query: 242 -----WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE--ILQEAKNQGISV 294
                W F  S++ D     +I D V LS    F      +  AF   +  E  N  +  
Sbjct: 604 NFRLYWXF--SIFLDKICFXLI-DFVTLSF---FGTQCMYLSFAFIYIVFHEMVNAEVEP 657

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
            + +Y +L+  C  A    KA   Y  M+S K++P     NALITA      + +  +VL
Sbjct: 658 NVHTYGALIDGCGRAGQVAKAFGAYGIMRSKKVEPDRVVFNALITACGQSGAVDRAFDVL 717

Query: 355 SDMK--SLGLCPNTITYSILLVAC---------------ERKDDVEVGLMLLSQAKEDGV 397
           ++M+  +  + P+ IT   L+ AC                +  D E    + +     GV
Sbjct: 718 AEMRAETQPIDPDHITVGALIKACTNAGSEVYTIAVNSHSQIGDWEFAYSVYTDMTRKGV 777

Query: 398 IPNLVMFKCII 408
           +P+ +    +I
Sbjct: 778 VPDEMFLSALI 788


>gi|357145938|ref|XP_003573820.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
            chloroplastic-like [Brachypodium distachyon]
          Length = 1084

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/700 (52%), Positives = 489/700 (69%), Gaps = 52/700 (7%)

Query: 20   NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
            N   D S+ +  YN  +  GR+ +C+DLLE+ME+KGLLDM K++HA F   CK Q+A+ E
Sbjct: 385  NGTVDTSDYIRRYNSSLMDGRLKDCVDLLENMEQKGLLDMKKIHHASFLIACKKQRAVME 444

Query: 80   AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            A RF +L+ NP +STFNML+SVCA S+D +GA QV+ L++EAGLK DCKLYTTLI+TCAK
Sbjct: 445  AVRFCRLIANPKMSTFNMLLSVCAHSQDFDGALQVMMLLKEAGLKPDCKLYTTLISTCAK 504

Query: 140  SGKVDAMFE-------------------------------------------NVKPDRVV 156
             GKVDAMFE                                            VKPDRVV
Sbjct: 505  CGKVDAMFEVFHEMVSAGIEPNVNTYGALIDGCAKAGQVAKAFGAYGIMSSKKVKPDRVV 564

Query: 157  FNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDHITIGALMKACANAGQVDRA 210
            FNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH+T+GALMK C  AGQ DRA
Sbjct: 565  FNALISACGESGAVARAFDVLSEMTAEPSESKGWKPILPDHVTVGALMKTCIQAGQADRA 624

Query: 211  REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            REVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+DM K GVIPDE+FLSAL+D 
Sbjct: 625  REVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGVIPDEMFLSALVDV 684

Query: 271  AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
            AGHA + +AAFEI+++ + +G  VGI++YSS MGAC NAK+W+KAL+L+E +K  +L PT
Sbjct: 685  AGHARRADAAFEIIKDVRAKGFHVGIMAYSSFMGACCNAKDWKKALQLFEEIKISRLTPT 744

Query: 331  VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
            V  MNALIT+LCDGDQ+ K++EVL+++K  G+ PN ITYS+L VACER  + E+G+ L  
Sbjct: 745  VPMMNALITSLCDGDQVQKSIEVLNELKEFGVRPNEITYSVLCVACERNGEAELGIDLFE 804

Query: 391  QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREA 450
            Q K DG+  N  +  C+ G+C +++    +L   ++ FN G+PQI+NKWT+ A+MV+R+A
Sbjct: 805  QLKVDGIGLNPTIVGCVTGLCLQKFSNDLSLGNIIVRFNLGKPQIDNKWTTSAIMVFRQA 864

Query: 451  IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR 510
            I AG +P+ +V+S+VLGCL+ P+++ ++   ++N+G+S D     N  SL++GFGEYD R
Sbjct: 865  ITAGLLPSSDVLSQVLGCLRFPHDSSLKSTFIDNMGISCDMPHHPNTYSLLEGFGEYDVR 924

Query: 511  AFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNV 570
            AFS+LEEAA  G V   S K   +V+DARK +++TA+V LL   K L+HRLAAGA+LPNV
Sbjct: 925  AFSILEEAALLGAVASASTKHSQIVIDARKSKMYTAEVSLLMTFKSLKHRLAAGARLPNV 984

Query: 571  NILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRW 630
             ILLP EK Q+     EKT+ +A R  QA+ +LLRRLG+ YQG  S+G++RINGL L+RW
Sbjct: 985  TILLPTEKKQVDLDEREKTLKLAGRVGQAVGSLLRRLGIKYQGEESHGRMRINGLTLRRW 1044

Query: 631  FQPKLAS-PFSGKPGELSSL--QLGKFITHQQRNIRTGNL 667
            F PK  S P +G P EL  L  +L K I  QQR+IR+ +L
Sbjct: 1045 FNPKFTSTPSTGTPAELLPLPSRLAKGIADQQRDIRSLSL 1084


>gi|110288709|gb|ABG65945.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|110288711|gb|ABG65946.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 614

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/598 (54%), Positives = 419/598 (70%), Gaps = 55/598 (9%)

Query: 7   NMLQFPYP-NGKHANYA-----HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
           N+L    P N   AN A      DV + L  YN L+  GR+ + +DLLE ME+KGLLDM+
Sbjct: 16  NLLSKENPENSTSANRAGLRGTKDVPDYLRRYNSLLIDGRLKDSVDLLESMEQKGLLDMN 75

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           K++HA F N CK Q+A+ EA RF KL+ NP +STFNML+SVCA+S+D +GA QV+ L++E
Sbjct: 76  KIHHASFLNACKKQRAVPEAVRFCKLINNPKMSTFNMLLSVCANSQDFDGALQVMVLLKE 135

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFE-------------------------------- 148
           AGLK DCKLYTTLI+TCAK GKVDAMFE                                
Sbjct: 136 AGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEMVSAGIEPNVNTYSALIDGCAKAGQVAK 195

Query: 149 -----------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------HPVDPDH 191
                       VKPDRVVFNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH
Sbjct: 196 AFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAFDVLSEMTAEASESKGSKPILPDH 255

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+D
Sbjct: 256 VTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYED 315

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+
Sbjct: 316 MNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKD 375

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+
Sbjct: 376 WKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSV 435

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 431
           L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V++FN G
Sbjct: 436 LFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIVVTFNLG 495

Query: 432 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADA 491
           +PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+G+S D 
Sbjct: 496 KPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENMGISCDI 555

Query: 492 LKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVY 549
               N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+TA+V+
Sbjct: 556 PHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYTAEVF 613


>gi|414868247|tpg|DAA46804.1| TPA: hypothetical protein ZEAMMB73_186781 [Zea mays]
          Length = 498

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 274/488 (56%), Positives = 365/488 (74%), Gaps = 5/488 (1%)

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
           P+ PDH+T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA
Sbjct: 13  PIVPDHVTVGALMKTCILAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFA 72

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +Y+DM + GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G+ VG I+YSSLMGA
Sbjct: 73  LKIYEDMNRIGVKPDEMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGTIAYSSLMGA 132

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           C NA +W+KAL+LYE +KSIKL P+VS MNALIT+LCDGDQ+ K +++L++M  LG+ PN
Sbjct: 133 CCNADDWKKALQLYEEIKSIKLTPSVSMMNALITSLCDGDQVLKAVDILNEMNILGVHPN 192

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
            ITYS+L VACER  + ++GL L  Q K DG+  N  +   + G+C + +    +L   +
Sbjct: 193 EITYSVLFVACERNGEAQLGLDLFEQLKMDGIDINPTIIGSLTGLCLQMFNIDFSLGNII 252

Query: 426 LSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 485
           ++F+SG+PQI+NKWTS A+MVYREA+ AG +P+ +V+S+VLGCL+LP+ + ++   +EN+
Sbjct: 253 VNFSSGKPQIDNKWTSSAVMVYREAVSAGLLPSSDVLSQVLGCLRLPHGSSLKSTFIENM 312

Query: 486 GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHT 545
           GVS D  +  N+ SL +GFGEYD RAFS+LEEAAS G V  +S KE  +V+DARKL+I T
Sbjct: 313 GVSCDIPQYPNINSLFEGFGEYDIRAFSILEEAASLGAVASISIKETRIVIDARKLKIFT 372

Query: 546 AKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLR 605
           A+V LL  L+ L+HRLAAG++LPNV ILLP EK Q+     EKT+ +A R  QA+ +LLR
Sbjct: 373 AEVSLLRTLRSLKHRLAAGSRLPNVTILLPTEKKQVDIDEKEKTLKLAGRIGQAVGSLLR 432

Query: 606 RLGLPYQGNGSYGKIRINGLALKRWFQPKLASPFSGK-PGELSSL--QLGKFITHQQRNI 662
           RLG+ YQG  S+G++RINGL ++RWF PKL S  S   P +L  L  +L K I  QQR+I
Sbjct: 433 RLGISYQGEESHGRMRINGLTIRRWFNPKLNSKSSAAGPADLLPLPSRLAKGIAGQQRDI 492

Query: 663 RTGNLSLE 670
           R  NLSLE
Sbjct: 493 R--NLSLE 498



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 14/227 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P   T   LM  C  +  ++ A +V +++QE  +K   ++YT  + +C+ +G +     +
Sbjct: 16  PDHVTVGALMKTCILAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKI 75

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +E+     VKPD +  +AL+   G +   D AF+++ +  A+   V    I   +LM AC
Sbjct: 76  YEDMNRIGVKPDEMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGT--IAYSSLMGAC 133

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTI-AINCCSQTGDWEF-ACSVYDDMTKKGVIP 259
            NA    +A ++Y+ I   +IK TP V  + A+      GD    A  + ++M   GV P
Sbjct: 134 CNADDWKKALQLYEEIK--SIKLTPSVSMMNALITSLCDGDQVLKAVDILNEMNILGVHP 191

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           +E+  S L       G+ +   ++ ++ K  GI +      SL G C
Sbjct: 192 NEITYSVLFVACERNGEAQLGLDLFEQLKMDGIDINPTIIGSLTGLC 238


>gi|168023641|ref|XP_001764346.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684498|gb|EDQ70900.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 978

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/697 (41%), Positives = 426/697 (61%), Gaps = 60/697 (8%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-P 90
           Y  +++ GRI +C+ LL +M++ G L   KV H++F+  CK++ ++++AF F KL+    
Sbjct: 234 YASMLKAGRIKDCLKLLGEMDKAGKLARMKVNHSKFYEACKARGSVEDAFAFAKLMREFS 293

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
           TL  + ML+SVC  +KD +GA +VL L++  GLKADC  YT+LI+ CAK+GKVD +F+  
Sbjct: 294 TLQHYTMLLSVCCHAKDIDGALRVLALLESRGLKADCMFYTSLISACAKAGKVDLLFQIF 353

Query: 149 -----------------------------------------NVKPDRVVFNALITACGQS 167
                                                    NVKPDRV+FN LI AC ++
Sbjct: 354 HEMEVAGIEANVHTFGAMIDGCARAGQLPKAFGAYGIMISKNVKPDRVIFNTLINACTRA 413

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
           GAV RAFDVL +M AE  P+ PDH+T GAL+ ACA AG+VDRA EVY+ + + N+KG+P 
Sbjct: 414 GAVQRAFDVLTDMKAEATPIKPDHVTYGALISACARAGEVDRALEVYQNMRESNVKGSPA 473

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            YT  ++ CSQ G+ ++A  VYDD+ K GV PDEVF SAL+D AGHA  +E AF I+   
Sbjct: 474 CYTAVVHACSQKGNVDYALLVYDDLKKDGVKPDEVFFSALVDAAGHAQDIEKAFSIIANM 533

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           K +G+  G + YSSLMG CSN  NW+KALE+Y+ ++S  L+PTVST NAL+TALC+ +Q 
Sbjct: 534 KKEGLKPGAVVYSSLMGVCSNLGNWEKALEVYQDIRSSGLQPTVSTFNALMTALCEANQF 593

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            + + +L D+K+ G+ PN I+YSILL ACE++   ++ L L   A  +G+ PN+ +   I
Sbjct: 594 TRALSILQDVKNSGIMPNQISYSILLRACEKEKMADMALDLYMTALSEGIKPNVGICDSI 653

Query: 408 IGMCSRRYEKARTLNEHVLSF-----NSGRPQIENKWTSLALMVYREAIVAGTIPTVEVV 462
            G+C ++ +      + + S      +S      ++W++ AL VYR+ I AGT P +E +
Sbjct: 654 TGLCLQQIQSYAAAPQKLWSMLPVPADSNNLSSTDQWSTWALSVYRQTIEAGTPPKIETL 713

Query: 463 SKVLGCLQLPYNADIRERLVENLGVSA--DALKRSNLCSLIDGFGEYDPRAFSLLEEAAS 520
           S++LGCL+    +       ++  + A     + S   +  DGFG YDPRA +L EEA++
Sbjct: 714 SQLLGCLRKLETSTKALTTFDDRTIMAFLGQPQVSKSSTPYDGFGIYDPRALALFEEASA 773

Query: 521 FGIVPCVSFKEI-PVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKT 579
             IVP +S   + P+V++A  + +  A+V +LTILKGL+HR AAGA++P V I L  EK 
Sbjct: 774 LKIVPTISSSSVQPIVINAEMMPVFAAEVCILTILKGLKHRHAAGARVPGVTIKLHTEKK 833

Query: 580 QIMSV-GGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPK---- 634
           +     GG  ++ +A++T QA+AALLRRLGL  QG+ S G++R+  L +++W +PK    
Sbjct: 834 EFYRTKGGLLSMTMADKTGQAVAALLRRLGLKAQGSESTGELRLTVLEIQKWLKPKPIQT 893

Query: 635 --LASPFSGKPGELSSLQ-LGKFITHQQRNIRTGNLS 668
             + +PF+      +    L K I  QQR IR G ++
Sbjct: 894 ETMKTPFAPPEKAFTPYSLLAKTIADQQRAIRLGTVA 930


>gi|168024390|ref|XP_001764719.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684013|gb|EDQ70418.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1020

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 293/695 (42%), Positives = 426/695 (61%), Gaps = 63/695 (9%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NP 90
           Y  L++ GRI +C+ LL ++ +   L + KV H++F+ VCK++  +++AF F K++    
Sbjct: 245 YASLLKAGRIKDCLVLLGEINKLDKLSLMKVNHSKFYEVCKTKGTVEDAFTFAKIMRVYS 304

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
           TL  + ML+SVC  +KD +GA +VL LV+  G KADC  YTTLI+ C+K+GKVD +F+  
Sbjct: 305 TLQHYTMLLSVCCHAKDIDGALRVLALVESRGFKADCVFYTTLISACSKAGKVDLLFQIL 364

Query: 149 -----------------------------------------NVKPDRVVFNALITACGQS 167
                                                    +VKPDRV+FN LI AC + 
Sbjct: 365 HEMDVAGVEANVHTFGAMIDGCARAGQLPKAFGAYGIMISKDVKPDRVIFNTLINACSRV 424

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
           GAV RAFDVLA+M +E  PV PDH+T GAL+ ACA  G+V RA EVY+ + + ++KG   
Sbjct: 425 GAVQRAFDVLADMKSEATPVKPDHVTYGALISACAKGGEVGRALEVYQSMRENDVKGFLA 484

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            YT A++ CSQ GD ++A ++YDD+ K GV PDEVF SAL+D AGH+G V+ AF IL   
Sbjct: 485 CYTAAVHACSQKGDLDYALAIYDDLLKDGVKPDEVFFSALVDAAGHSGDVDKAFSILDIM 544

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           +  G+  G + YSSLMG CSN   W+K LE+YE ++S KL+PTVST NAL+TALC+  Q 
Sbjct: 545 RKSGMKPGAVVYSSLMGVCSNLGEWEKGLEVYEGIRSSKLRPTVSTYNALMTALCEAKQF 604

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            + + VL+D+K  G  PN ++YSILL ACER+   ++ L L + A+ +G+ PNLV+   I
Sbjct: 605 DRALSVLNDLKDAGRTPNQVSYSILLKACEREGKADMALDLYTTARAEGIKPNLVICDSI 664

Query: 408 IGMCSRRYEKARTLNEHVLSFNSGRP------QIENKWTSLALMVYREAIVAGTIPTVEV 461
           IG+C ++ +   ++   ++S++   P        + +W + AL +YR+ I AG +PTVE+
Sbjct: 665 IGLCLQQIQT--SVAAPLVSWSILPPADNSNISSQQQWVTWALTIYRQTIEAGVLPTVEI 722

Query: 462 VSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASF 521
           +S++LGCL+ P  +     + ++   +     +    +  DGFG YDPRA +L EEAA+ 
Sbjct: 723 LSQLLGCLRKPEASTTPVSIFDDKAAAFLGQSQPATSTSFDGFGIYDPRALALFEEAAAL 782

Query: 522 GIVPCVSFKEI-PVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQ 580
            I P  S+  + P+V++A  + +  A+V LLT+LK L+HR AAGA++P+V I L VEK +
Sbjct: 783 KIAPMFSYNTLQPIVINAEAMPVFAAEVCLLTVLKSLKHRHAAGARVPSVKIKLHVEKKE 842

Query: 581 -IMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPK----- 634
                GG  +I+IA+RT QA+AALLRRL L  QG+ S G++R+  + +++W  PK     
Sbjct: 843 SYRPKGGLISINIADRTGQAVAALLRRLRLKAQGSASSGELRLTMVEIQKWLNPKPSTTP 902

Query: 635 -LASPFS--GKPGELSSLQLGKFITHQQRNIRTGN 666
            L +PFS   K     SL L K I  QQR IR G 
Sbjct: 903 ALKTPFSRLDKSSSPYSL-LAKTIADQQRAIRLGT 936


>gi|302768873|ref|XP_002967856.1| hypothetical protein SELMODRAFT_169254 [Selaginella moellendorffii]
 gi|300164594|gb|EFJ31203.1| hypothetical protein SELMODRAFT_169254 [Selaginella moellendorffii]
          Length = 731

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 292/706 (41%), Positives = 419/706 (59%), Gaps = 89/706 (12%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
           RI E +++LE+ME+KG LDM+KVYHARF+  CK Q A++EAFR+  L+ +PTLST+NML+
Sbjct: 12  RIRESLEVLEEMEKKGTLDMNKVYHARFYQECKRQLAVEEAFRYTGLIKSPTLSTYNMLL 71

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC---------------------- 137
           SVC ++ D  GAF     ++ AG K DC +YTTLI+TC                      
Sbjct: 72  SVCCNAGDMNGAFGAFAALKRAGFKPDCMIYTTLISTCSKALKTDLVFQARNPGPILHWT 131

Query: 138 ------------------------------AKSGKVDAMF--------ENVKPDRVVFNA 159
                                         A++G++   F        + +KPDRV+FN+
Sbjct: 132 NSVLAQVYREMESVGVEANLLTYGAIIDGCARTGELAKAFGIYRIMLSKKIKPDRVIFNS 191

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
           LI ACG+SGAV RAF+V  E+ +E +P++P+H+T+ +L+ AC+ AG  D A EVY M+ K
Sbjct: 192 LINACGRSGAVKRAFEVFTELKSE-NPINPNHVTMCSLIDACSKAGDGDSAYEVYTMMRK 250

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
             I G PE YT A++ CS +G+ E A S+YDDM K GV PDE+F SALID AGHA K++ 
Sbjct: 251 RGIGGCPEPYTAAVHACSSSGNLERAFSIYDDMKKDGVKPDEIFFSALIDVAGHASKIDC 310

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           AF++LQE +   +  G + +SSLMG CSN  NW+KA+ LYE+++++ ++P+VST+NAL+T
Sbjct: 311 AFDVLQEVEKYSLVPGPVIFSSLMGVCSNTGNWEKAIFLYENIQAVGIRPSVSTLNALMT 370

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
           ALC G Q    ++ L ++K  G+ PN +TYSILL ACE++++  + L L + A  DG++P
Sbjct: 371 ALCRGKQFQNALQSLEELKEAGVSPNQLTYSILLEACEKENEAGIALNLYTHAIADGIVP 430

Query: 400 NLVMFKCIIGMCSRRYEK-------ARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 452
           NL M   IIG+C             A ++N   +  ++ +P    +W S AL  +R+ + 
Sbjct: 431 NLAMCDNIIGICLEGIRSSIGPPKLASSVNPLWMVDDNQKPH--GQWLSWALACFRQTLS 488

Query: 453 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAF 512
            G  PT+ V+S++L CL++P ++   ER    L     +  +     L++GFG YDPRA 
Sbjct: 489 GGAQPTLPVLSRLLACLRIPESS---ERADTGLVFQTSSPNK----HLVEGFGVYDPRAS 541

Query: 513 SLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNI 572
           +L EEA+S G+VP       P+V +A  L I+TA+V LLTILK LR R AAGA+LP V I
Sbjct: 542 ALYEEASSIGVVPAFKCDGEPIVFEADGLPIYTAEVCLLTILKALRRRCAAGAELPFVTI 601

Query: 573 LL-PVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWF 631
                 K+ I+  G  K I +  R  QA+AALLR+L L + G  S GKIR++  AL +WF
Sbjct: 602 KFETTRKSVILPDGRVKAITVTRRNGQALAALLRKLKLRFNGKESLGKIRLHPAALSQWF 661

Query: 632 QPKLASPFSGKPGEL-----------SSLQLGKFITHQQRNIRTGN 666
           +P +A+P    P +              + LGK I  QQR IR G 
Sbjct: 662 KPSVATPSPSSPAKARVDHANLGVLPRPIMLGKSIAEQQRAIRMGT 707


>gi|110288708|gb|ABG65944.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 377

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/364 (57%), Positives = 278/364 (76%)

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
           P+ PDH+T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA
Sbjct: 13  PILPDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFA 72

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +Y+DM K GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGA
Sbjct: 73  LKIYEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGA 132

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           C NAK+W+KAL+L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN
Sbjct: 133 CCNAKDWKKALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPN 192

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
            ITYS+L VACER  + ++GL L  Q K D +  N  +  C+ G+C + ++   +L   V
Sbjct: 193 MITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFDNDLSLGNIV 252

Query: 426 LSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 485
           ++FN G+PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++  +    +EN+
Sbjct: 253 VTFNLGKPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHDNTLTNTFIENM 312

Query: 486 GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHT 545
           G+S D     N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  ++VDARK +I+T
Sbjct: 313 GISCDIPHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRILVDARKSKIYT 372

Query: 546 AKVY 549
           A+V+
Sbjct: 373 AEVF 376



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 50/263 (19%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P   T   LM  C  +  ++ A +V +++QE  +K   ++YT  + +C+ +G +     +
Sbjct: 16  PDHVTVGALMKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKI 75

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +E+     V+PD +  +AL+   G +   D AF+++ +  A+ + V    I   +LM AC
Sbjct: 76  YEDMNKIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGT--IAYSSLMGAC 133

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            NA                                    DW+ A  +++++    ++P  
Sbjct: 134 CNA-----------------------------------KDWKKALQLFEEIKSIKLMPTV 158

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
             ++ALI       +V  +FE+L E K  G+   +I+YS L  AC      Q  L+L+E 
Sbjct: 159 SMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQLGLDLFEQ 218

Query: 322 MK--SIKLKPTVSTMNALITALC 342
           +K  SI L PT+      +T LC
Sbjct: 219 LKIDSIDLNPTIV---GCLTGLC 238


>gi|5123700|emb|CAB45444.1| putative protein [Arabidopsis thaliana]
 gi|7270434|emb|CAB80200.1| putative protein [Arabidopsis thaliana]
          Length = 749

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/348 (62%), Positives = 257/348 (73%), Gaps = 43/348 (12%)

Query: 6   KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
           ++M QFP  N +  N      E   +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            FF  CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA  VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500

Query: 126 DCKLYTTLITTCAKSGKVDAMFE------------------------------------- 148
           DCKLYTTLI++CAKSGKVDAMFE                                     
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                 NVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC 
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           F SALID AGHA  ++ AF ILQ+AK+QGI +G ISYSSLMGAC N K
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNEK 728



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 6/229 (2%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           +D D I   +  KAC     V  A    K+I    +  T   + + ++ C+ + D E A 
Sbjct: 432 LDMDKIYHASFFKACKKQRAVKEAFRFTKLI----LNPTMSTFNMLMSVCASSQDIEGAR 487

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            V   + + G+  D    + LI     +GKV+A FE+  +  N G+   + ++ +L+  C
Sbjct: 488 GVLRLVQESGMTADCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGC 547

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK--SLGLCP 364
           + A    KA   Y  ++S  +KP     NALI+A      + +  +VL++MK  +  + P
Sbjct: 548 ARAGQVAKAFGAYGILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP 607

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           + I+   L+ AC     VE    +     + G+     ++   +  CS+
Sbjct: 608 DHISIGALMKACCNAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSK 656


>gi|302799808|ref|XP_002981662.1| hypothetical protein SELMODRAFT_115078 [Selaginella moellendorffii]
 gi|300150494|gb|EFJ17144.1| hypothetical protein SELMODRAFT_115078 [Selaginella moellendorffii]
          Length = 585

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/592 (40%), Positives = 352/592 (59%), Gaps = 70/592 (11%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
           RI E +++LE+ME+KG LDM+KVYHARF+  CK Q A++EAFR+  L+ +PTLST+NML+
Sbjct: 5   RIRESLEVLEEMEKKGTLDMNKVYHARFYQECKRQLAVEEAFRYTGLIKSPTLSTYNMLL 64

Query: 100 SVCASSKDSEGAFQVLRL-VQEAGLKADCKLYTTLITTCAKSGKVDAMFE---------- 148
           SVC +++D+          ++ AG K DC +YTTLI+TC+K+ K D +F+          
Sbjct: 65  SVCCNARDTNAGAFGAFAALKRAGFKPDCMIYTTLISTCSKALKTDLVFQARNPAQVYRE 124

Query: 149 ---------------------------------------NVKPDRVVFNALITACGQSGA 169
                                                   +KPDRV+FN+LI ACG+SGA
Sbjct: 125 MESVGVEANLLTYGAIIDGCARTGELAKAFGIYRIMLSKKIKPDRVIFNSLINACGRSGA 184

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           V RAF+V  E+ +E   ++P+H+T+ +L+ AC+ AG  D A EVY M+ K  I G PE Y
Sbjct: 185 VKRAFEVFTELKSE-SLINPNHVTMCSLIDACSKAGDGDSAYEVYTMMRKRGIGGCPEPY 243

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           T A++ CS +G+ E A S+YDDM K GV  DE+F SALID AGHAGK+  AF++LQE + 
Sbjct: 244 TAAVHACSSSGNLERAFSIYDDMKKDGVKADEIFFSALIDVAGHAGKINCAFDVLQEVEK 303

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
             +  G + +SSLMG CSN +NW+KA+ LYE+++++ ++P+VST+NAL+TALC G Q   
Sbjct: 304 YSLVPGPVIFSSLMGVCSNVRNWEKAIFLYENIQAVGIRPSVSTLNALMTALCRGKQFQN 363

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            ++ L ++K  G+ PN +TYSILL ACE++++  + L L + A  DG++PNL M   IIG
Sbjct: 364 ALQSLEELKEAGVSPNQLTYSILLEACEKENEAGIALNLYTHAIADGIVPNLAMCDNIIG 423

Query: 410 MC---SRRYEKARTLNEHVLSFNSGRPQIENK----WTSLALMVYREAIVAGTIPTVEVV 462
           M    +        L   V  + + R  ++ +      S AL  +R+ +  G  PT+ V+
Sbjct: 424 MLLADALEICIEPMLCTKVFVWKASRAPLDLRSLLPRLSWALACFRQTLSGGAQPTLPVL 483

Query: 463 SKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFG 522
           S++L CL++P ++   ER    L     +  +     L++GFG YDPRA +L EEA+S G
Sbjct: 484 SRLLACLRIPESS---ERADTGLVFQTSSPNK----HLVEGFGVYDPRASALYEEASSIG 536

Query: 523 IVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILL 574
           +VP       P+V +A  L I+TA+V    IL     RL   A+L N  + L
Sbjct: 537 VVPAFKCDGEPIVFEADGLPIYTAEVSSHFIL-----RLLLNARLHNRCVCL 583


>gi|45773928|gb|AAS76768.1| At4g34820 [Arabidopsis thaliana]
          Length = 321

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/323 (60%), Positives = 249/323 (77%), Gaps = 5/323 (1%)

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
           ME L ++K+LGL PNTITYS+L++A ERKDD EV   LLSQAK DGV PNL+M +CI  +
Sbjct: 1   MEYLDEIKTLGLKPNTITYSMLMLASERKDDFEVSFKLLSQAKGDGVSPNLIMCRCITSL 60

Query: 411 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQ 470
           C RR+EKA    E V+SF SGRPQIENKWTS+ALMVYRE I  GT+PT EVVS+VLGCLQ
Sbjct: 61  CKRRFEKACAGGEPVVSFKSGRPQIENKWTSMALMVYRETISGGTVPTTEVVSQVLGCLQ 120

Query: 471 LPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFK 530
           LP++A +R+RL+  LG++  + K+ N+  L+DGFGEYDPRAFSLLEEA S G++P VSF 
Sbjct: 121 LPHDAALRDRLISTLGINISSQKQHNIFPLVDGFGEYDPRAFSLLEEATSLGVLPSVSFN 180

Query: 531 EIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTI 590
           +IP+  D  +L  + A+VYLLTI KGL+HRLAAGAK+P++N+++ +++ +I +  GEKTI
Sbjct: 181 KIPLFFDTTELPKNVAEVYLLTIFKGLKHRLAAGAKIPHINLIISIQEKEIRTPEGEKTI 240

Query: 591 DIAERTTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASPFS-GKPGELSSL 649
           D+  R  Q I ALLRRL +PY    S  ++RING++LK WFQPKL SPFS GKPG+L S 
Sbjct: 241 DLTGRVGQEIGALLRRLDIPYHRKDS--RLRINGVSLKNWFQPKLDSPFSGGKPGDLRSS 298

Query: 650 Q--LGKFITHQQRNIRTGNLSLE 670
           Q  LG  I+ QQR+IR GNLSLE
Sbjct: 299 QVPLGNQISRQQRSIRLGNLSLE 321


>gi|167998422|ref|XP_001751917.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162697015|gb|EDQ83352.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1216

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/660 (34%), Positives = 352/660 (53%), Gaps = 63/660 (9%)

Query: 23   HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
             D +  L  Y + +  GR+ +C+ +LE M+   +L+M KV    F++ CK ++A+KEAF+
Sbjct: 520  RDPAVYLFLYEKFLEAGRLRDCVAVLESMDEHLILNMKKVNSYEFYSACKKRRALKEAFK 579

Query: 83   FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            F +LV   +L  FNML+SVCA ++D+  A +VL +V+ AGL+ADC  YTTLI+ CAK+ +
Sbjct: 580  FSRLVRRKSLRNFNMLLSVCAHAQDASSACRVLDMVKMAGLQADCIFYTTLISACAKASR 639

Query: 143  VDAMF-------------------------------------------ENVKPDRVVFNA 159
            +D MF                                           + V+PDRV+FN 
Sbjct: 640  IDLMFKFFNEMEIQGIEANVQTFGAMIDGCARAGDVPKAFGIYKKMLNQEVEPDRVIFNT 699

Query: 160  LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
            LITACG++GA  RAF+VLA+M     P+  DHIT GAL+ AC+ AG+V+RA EVYK +  
Sbjct: 700  LITACGRAGAFLRAFEVLADMRDAPQPIALDHITYGALIAACSRAGEVERALEVYKRMRS 759

Query: 220  YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
              + GT E YT A++ CS  G    A S+YDDM + GV PDEVF  A++D AGHAGK++ 
Sbjct: 760  SKVSGTTECYTAAVHACSHKGYLNIALSIYDDMREDGVQPDEVFFCAMMDVAGHAGKIDV 819

Query: 280  AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
            AF ILQE KN G     ++Y++LM ACS   + + A+ +YE +K++ L+P +      + 
Sbjct: 820  AFAILQEMKNIGTKPSPVTYNTLMVACSKVDDAENAMRVYEEIKALGLRPIL-----FLL 874

Query: 340  ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
             L          E+ +  K      +       L    R D   + L L +Q K   +  
Sbjct: 875  GLSSQRWSGAGRELDNAFKDFCFAISD------LAEFPRDDQANLALELYNQIKGYSIEF 928

Query: 400  NLVMFKCIIGMCSRRYE-KARTLNE-HVLSFNSGRPQIE--NKWTSLALMVYREAIVAGT 455
               M   I+G+C  R E  A  L +  +L   +    ++    WT+  L+VY E + AG 
Sbjct: 929  TQQMCDSILGLCVSRVECGAPPLQDPKLLCIKTIEDDLDLHQFWTNQGLVVYDELLSAGL 988

Query: 456  IPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSN--LCSLIDGFGEYDPRAFS 513
             PT+E V++VLGC+++         L+ + G S       N    ++ +    Y PRA +
Sbjct: 989  TPTLETVNRVLGCMRVSKRNS--RFLLSDEGCSNSRRHNKNRIFFNVEEACSVYLPRALT 1046

Query: 514  LLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNIL 573
            L EEA S G++  V +   P+ VD R   I+  +V +L +LK L+ R   G  L +V ++
Sbjct: 1047 LYEEARSLGVIQEVDYAVAPIFVDMRTFPIYAVEVGVLVLLKDLKQRQELGLYLNSVKLI 1106

Query: 574  LPVEKTQIMSV-GGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQ 632
              VE  ++ +  GG + + ++ RT QA+  LLR+L + Y+   S G++ I   A++ WF+
Sbjct: 1107 FAVEVKEVFTANGGFRRVRVSSRTGQAVKTLLRKLRINYRDYDSVGEVTITNSAIRNWFR 1166


>gi|5123699|emb|CAB45443.1| putative protein [Arabidopsis thaliana]
 gi|7270433|emb|CAB80199.1| putative protein [Arabidopsis thaliana]
          Length = 283

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 155/256 (60%), Positives = 200/256 (78%)

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
           ME L ++K+LGL PNTITYS+L++A ERKDD EV   LLSQAK DGV PNL+M +CI  +
Sbjct: 1   MEYLDEIKTLGLKPNTITYSMLMLASERKDDFEVSFKLLSQAKGDGVSPNLIMCRCITSL 60

Query: 411 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQ 470
           C RR+EKA    E V+SF SGRPQIENKWTS+ALMVYRE I  GT+PT EVVS+VLGCLQ
Sbjct: 61  CKRRFEKACAGGEPVVSFKSGRPQIENKWTSMALMVYRETISGGTVPTTEVVSQVLGCLQ 120

Query: 471 LPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFK 530
           LP++A +R+RL+  LG++  + K+ N+  L+DGFGEYDPRAFSLLEEA S G++P VSF 
Sbjct: 121 LPHDAALRDRLISTLGINISSQKQHNIFPLVDGFGEYDPRAFSLLEEATSLGVLPSVSFN 180

Query: 531 EIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTI 590
           +IP+  D  +L  + A+VYLLTI KGL+HRLAAGAK+P++N+++ +++ +I +  GEKTI
Sbjct: 181 KIPLFFDTTELPKNVAEVYLLTIFKGLKHRLAAGAKIPHINLIISIQEKEIRTPEGEKTI 240

Query: 591 DIAERTTQAIAALLRR 606
           D+  R  Q I ALLRR
Sbjct: 241 DLTGRVGQEIGALLRR 256


>gi|149391327|gb|ABR25681.1| unknown [Oryza sativa Indica Group]
          Length = 222

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 135/219 (61%), Positives = 170/219 (77%)

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           MK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA  +Y+DM K GV
Sbjct: 1   MKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGV 60

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PDE+FLSAL+D AGHA + +AAFEI+++A+ +G  VG I+YSSLMGAC NAK+W+KAL+
Sbjct: 61  QPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQ 120

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L+E +KSIKL PTVS MNALITALCDGDQ+ K+ EVLS+MK LG+CPN ITYS+L VACE
Sbjct: 121 LFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACE 180

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
           R  + ++GL L  Q K D +  N  +  C+ G+C + ++
Sbjct: 181 RNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFD 219



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 114/254 (44%), Gaps = 50/254 (19%)

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEN-----V 150
           M  C  +  ++ A +V +++QE  +K   ++YT  + +C+ +G +     ++E+     V
Sbjct: 1   MKTCIQAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGV 60

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           +PD +  +AL+   G +   D AF+++ +  A+ + V    I   +LM AC NA      
Sbjct: 61  QPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGT--IAYSSLMGACCNA------ 112

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
                                         DW+ A  +++++    ++P    ++ALI  
Sbjct: 113 -----------------------------KDWKKALQLFEEIKSIKLMPTVSMMNALITA 143

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK--SIKLK 328
                +V  +FE+L E K  G+   +I+YS L  AC      Q  L+L+E +K  SI L 
Sbjct: 144 LCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQLGLDLFEQLKIDSIDLN 203

Query: 329 PTVSTMNALITALC 342
           PT+      +T LC
Sbjct: 204 PTIV---GCLTGLC 214



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 10/165 (6%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--- 141
           K+   P     + L+ V   ++ ++ AF++++  +  G +     Y++L+  C  +    
Sbjct: 57  KIGVQPDEMFLSALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWK 116

Query: 142 KVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           K   +FE +K     P   + NALITA      V ++F+VL+EM      V P+ IT   
Sbjct: 117 KALQLFEEIKSIKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKR--LGVCPNMITYSV 174

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
           L  AC    +     ++++ +   +I   P +       C Q  D
Sbjct: 175 LFVACERNAEAQLGLDLFEQLKIDSIDLNPTIVGCLTGLCLQMFD 219



 Score = 39.7 bits (91), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 40/209 (19%), Positives = 78/209 (37%), Gaps = 28/209 (13%)

Query: 18  HANYAHDVSEQLHSYN-------------RLIRQGRISECIDLLEDMERKGLLDMDKVYH 64
            A+ A +V + L  YN                  G +   + + EDM + G+   D+++ 
Sbjct: 9   QADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKIYEDMNKIGV-QPDEMFL 67

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLST----FNMLMSVCASSKDSEGAFQVLRLVQE 120
           +   +V    +    AF   K             ++ LM  C ++KD + A Q+   ++ 
Sbjct: 68  SALVDVAGHARRADAAFEIMKDARAKGYQVGTIAYSSLMGACCNAKDWKKALQLFEEIKS 127

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDR 172
             L     +   LIT      +V   FE         V P+ + ++ L  AC ++     
Sbjct: 128 IKLMPTVSMMNALITALCDGDQVLKSFEVLSEMKRLGVCPNMITYSVLFVACERNAEAQL 187

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             D+  ++  ++  +D +   +G L   C
Sbjct: 188 GLDLFEQL--KIDSIDLNPTIVGCLTGLC 214


>gi|255073535|ref|XP_002500442.1| predicted protein [Micromonas sp. RCC299]
 gi|226515705|gb|ACO61700.1| predicted protein [Micromonas sp. RCC299]
          Length = 800

 Score =  246 bits (628), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 211/723 (29%), Positives = 331/723 (45%), Gaps = 94/723 (13%)

Query: 28  QLHSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKL 86
            L  Y  L+  GR+   ++LL  ++  GL  +  +V +  F   C  + A+  AF F   
Sbjct: 7   HLQLYETLVDCGRLHNALELLRALKTAGLNTVGGRVSNKAFLRQCARRSAVAVAFDFVSF 66

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           V  P +  +NML+SVCAS+ DS  AF    ++ + G++ D   YTTLI+ CAK+G+++  
Sbjct: 67  VDYPDVRLYNMLLSVCASAADSRSAFAAFVMMYDNGVQPDVMAYTTLISACAKAGELEKA 126

Query: 147 FEN---------------------------------------------VKPDRVVFNALI 161
           FE                                              V PD  + N ++
Sbjct: 127 FETFRRMEMDGLEGNVVTYGALMDALSRRVAATLRRCFDLREEMDDAGVAPDGTMINTIL 186

Query: 162 TACGQSG--------AVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           +ACG++         A+ +AFD+  EM +++   + PD  T  AL+KAC NAGQ  R   
Sbjct: 187 SACGRAAEVRALSADALQKAFDLYDEMESSDEADLAPDAYTYSALIKACVNAGQSMRGLS 246

Query: 213 VYK--MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           +Y   M     I+ +  V+  A+  CS   D   A ++++DM  + V PD +  + LI  
Sbjct: 247 LYDRAMDPSAGIEPSIMVFQEAMIACSHLADLGKAWAIWEDMRVERVAPDAMLYATLIAV 306

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
           AG AGK E A  ++ E +  G++     ++SL G  + A +          + S  L   
Sbjct: 307 AGRAGKREEAERVVFEMERAGVAPTPEVFASLAGIAARAGDGAGVESAIAEVASRGLAVP 366

Query: 331 VSTMNALITALC---DGDQLPKTM-EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           +   NAL+TA     D D   + M E  ++M++ GL P+  T+  LL +C R  D  +  
Sbjct: 367 LEMYNALVTAAARRGDVDAAQEAMFEAEAEMRAAGLEPDEQTWCELLSSCARHGDASLTW 426

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMC-----------SRRYEKARTLNEHVLSFNSGRPQI 435
               ++++ G  P+ V    +IG+             RR  K R         ++GR + 
Sbjct: 427 DTYKRSRKAGQPPSEVALNILIGVTLLKIRALTDPDDRRNIK-RMSQWDQDDDSAGRKKE 485

Query: 436 ENKWTSLA---LMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL-GVSADA 491
           E +WT  A   +  Y EA VAG  P +   S +L CL+ P    +R    E   G  A++
Sbjct: 486 EPEWTEWADRAIAAYHEATVAGVRPRLATFSAMLACLRPPTLPSLRAVDRETRPGSKAES 545

Query: 492 LKRS---NLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKV 548
           L R+      S  D    Y  RA  + EEA + G+VP  +  E   V D RK     A+V
Sbjct: 546 LARAVSHEDSSHEDARKYYPLRALIMYEEAQAIGVVPKFA-TETDSVYDIRKFPPAAAEV 604

Query: 549 YLLTILKGLRHRLAAGA-----KLPNVN--ILLPVEKTQIMSVGGEKTIDIAERTTQAIA 601
            +LT+L+  R R  A A     +LPNV   +L   E  ++++ G ++   +A+ T   + 
Sbjct: 605 AVLTMLRVFRRRSDAHAGAGDDELPNVTLRVLSDEEHEEMIASGDDEGRRLAQ-TGDRVI 663

Query: 602 ALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASPFSGK-PGELSSLQLGKFITHQQR 660
            LLRRL   Y G+ S G+I ++G  +KRW Q K   P   + PG  + L+  + +  Q R
Sbjct: 664 VLLRRLRFNYGGSLSAGRIELSGHVIKRWLQAK--PPKDERAPGVEAGLR--QNLQDQAR 719

Query: 661 NIR 663
           NIR
Sbjct: 720 NIR 722


>gi|414868246|tpg|DAA46803.1| TPA: hypothetical protein ZEAMMB73_186781 [Zea mays]
          Length = 175

 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/157 (66%), Positives = 130/157 (82%)

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
           P+ PDH+T+GALMK C  AGQ DRAREVYKM+ +YNIKGTPEVYTIA+  CS TGD  FA
Sbjct: 13  PIVPDHVTVGALMKTCILAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFA 72

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +Y+DM + GV PDE+FLSAL+D AGHA + +AAFEI+++A+ +G+ VG I+YSSLMGA
Sbjct: 73  LKIYEDMNRIGVKPDEMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGTIAYSSLMGA 132

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           C NA +W+KAL+LYE +KSIKL P+VS MNALIT+LC
Sbjct: 133 CCNADDWKKALQLYEEIKSIKLTPSVSMMNALITSLC 169



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 255 KGVIPDEVFLSALID---FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           K ++PD V + AL+     AG A +    +++LQE   +G       Y+  + +CS   +
Sbjct: 12  KPIVPDHVTVGALMKTCILAGQADRAREVYKMLQEYNIKGTPE---VYTIALRSCSLTGD 68

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
              AL++YE M  I +KP    ++AL+       +     E++ D ++ GL   TI YS 
Sbjct: 69  LGFALKIYEDMNRIGVKPDEMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGTIAYSS 128

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L+ AC   DD +  L L  + K   + P++ M   +I
Sbjct: 129 LMGACCNADDWKKALQLYEEIKSIKLTPSVSMMNALI 165



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 75/147 (51%), Gaps = 12/147 (8%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P   T   LM  C  +  ++ A +V +++QE  +K   ++YT  + +C+ +G +     +
Sbjct: 16  PDHVTVGALMKTCILAGQADRAREVYKMLQEYNIKGTPEVYTIALRSCSLTGDLGFALKI 75

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +E+     VKPD +  +AL+   G +   D AF+++ +  A+   V    I   +LM AC
Sbjct: 76  YEDMNRIGVKPDEMFLSALVDVAGHARRADAAFEIMKDARAKGLLVGT--IAYSSLMGAC 133

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV 228
            NA    +A ++Y+ I   +IK TP V
Sbjct: 134 CNADDWKKALQLYEEIK--SIKLTPSV 158


>gi|449489787|ref|XP_004158415.1| PREDICTED: pentatricopeptide repeat-containing protein At4g34830,
           chloroplastic-like [Cucumis sativus]
          Length = 542

 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/188 (56%), Positives = 143/188 (76%), Gaps = 8/188 (4%)

Query: 5   GKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH 64
           GK +   P+PNGKH +Y +   +Q  SYN+ ++ GR+ +CI +L+DME++G+LDM+K+YH
Sbjct: 355 GKVVNGLPHPNGKHVHYKNLDVDQYKSYNQCLKGGRLHDCIRILQDMEKEGILDMNKIYH 414

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
            +FFN+CKS+KA++EAF++  L+ NPTLSTFNMLMSVCASS+DSE AFQV+RLVQEAG+K
Sbjct: 415 GKFFNICKSKKAVQEAFQYTALIQNPTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMK 474

Query: 125 ADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDV 176
           ADCKLYTTLI+TC KSGKVDAMFE         V+P+   + ALI  C ++  V +AF V
Sbjct: 475 ADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGV 534

Query: 177 LAEMNAEV 184
              M ++V
Sbjct: 535 YGIMRSKV 542



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 5/161 (3%)

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
           C + G +     +L +M  E   +D + I  G     C +   V  A +   +I      
Sbjct: 385 CLKGGRLHDCIRILQDMEKE-GILDMNKIYHGKFFNICKSKKAVQEAFQYTALIQN---- 439

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
            T   + + ++ C+ + D E A  V   + + G+  D    + LI   G +GKV+A FE+
Sbjct: 440 PTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEV 499

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
                N G+   + +Y +L+  C+ A    KA  +Y  M+S
Sbjct: 500 FHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGVYGIMRS 540



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 6/131 (4%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           +++        C    AV  AF   A +       +P   T   LM  CA++   +RA +
Sbjct: 410 NKIYHGKFFNICKSKKAVQEAFQYTALIQ------NPTLSTFNMLMSVCASSQDSERAFQ 463

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           V +++ +  +K   ++YT  I+ C ++G  +    V+  M   GV P+     ALID   
Sbjct: 464 VVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCA 523

Query: 273 HAGKVEAAFEI 283
            A +V  AF +
Sbjct: 524 RAAQVAKAFGV 534



 Score = 48.5 bits (114), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 274 AGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            G++     ILQ+ + +GI  +  I +      C + K  Q+A +      ++   PT+S
Sbjct: 388 GGRLHDCIRILQDMEKEGILDMNKIYHGKFFNICKSKKAVQEAFQY----TALIQNPTLS 443

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N L++         +  +V+  ++  G+  +   Y+ L+  C +   V+    +  + 
Sbjct: 444 TFNMLMSVCASSQDSERAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEVFHRM 503

Query: 393 KEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
              GV PN+  +  +I  C+R  + A+  
Sbjct: 504 VNAGVEPNVHTYGALIDGCARAAQVAKAF 532


>gi|384251863|gb|EIE25340.1| hypothetical protein COCSUDRAFT_40616 [Coccomyxa subellipsoidea
           C-169]
          Length = 852

 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 202/788 (25%), Positives = 321/788 (40%), Gaps = 155/788 (19%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLD-MDKVYHARFFNVC-------KSQKAIKEA 80
           L+ Y+ L  +GR+   ++++E   R    D + +V H  F  +          Q+A K A
Sbjct: 43  LNLYSDLAHEGRLEAALEIVEAAVRAKRDDILGRVRHNHFLRMAADQACGPNKQQATKLA 102

Query: 81  FRFFKLVPN--PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
            RF +++P       T+NML+SVC  +KD   A     +++  G K D  LYT LI+ CA
Sbjct: 103 MRFVQVLPRKFTDARTYNMLVSVCVKAKDLTQALHAADMLKSTGRKLDTILYTNLISVCA 162

Query: 139 KSGKVDAMFE--------NVKPDRVVFNALITACG-------------QSGAVDRAFDVL 177
             G  DA FE         VK +  V+ ALI+AC              Q   ++RA  VL
Sbjct: 163 AVGNADAAFELYAAMKAEAVKTEAQVYTALISACSREILDTPPANRRVQLVLLERARGVL 222

Query: 178 AEMNAEVHPVDPDHI-----------------------TIGALMKACANAGQVDRAREVY 214
            E+ A  + + PD I                       T  +L+ ACA AG+ D A  VY
Sbjct: 223 GEVRA--NGLRPDAILWNALITAAGRAGQGSGCKADAHTYASLVDACARAGRADLAIRVY 280

Query: 215 KMIHKYNIKGTPEVYTIAINCC--SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
               +     +  VY  AI  C  ++  D   A  +Y DM + GV PDE   + L+  AG
Sbjct: 281 HKALRERCDASLLVYASAIAACRTAKPVDLTTAMDIYGDMQRNGVDPDERLYATLMGVAG 340

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            AG +E AF +  E    G+    ++ S+L+ AC +    ++A +LY  M+     P++ 
Sbjct: 341 AAGNLELAFSLQDEMVMDGLRPSKLTQSALIQACIDCGALERARQLYAAMQEQGRAPSLQ 400

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
            +N LI A     +L   + ++ D+ + G+ P+  T++ +L AC+R ++ E+   +  +A
Sbjct: 401 ALNNLINAHGRACRLGDVVSLVQDLAAAGMRPDAFTFAAILNACQRANEAELAFDVYRRA 460

Query: 393 -------------------KEDGVIPNLVMFKCIIGMCSRRYE----------KARTLNE 423
                              K+ G + +  +   ++ +C  R            K  ++  
Sbjct: 461 PPLHILNRSCVACLSYGILKQRGHLVDEAVCFILVRLCYNRLRDAWYPGGYPPKKSSVTA 520

Query: 424 HVLSFNSGRPQI-----------------ENKWTSLALMVYREAIVAGTIPTVEVVSKVL 466
             L  N   P +                 E  W   A+ VYREA+ AG  P   V+ +VL
Sbjct: 521 SRLGRNPAGPALLRALGSVGNEHVGGSVGEAVWAQRAVDVYREALSAGYRPRHHVLERVL 580

Query: 467 GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE--------YDPRAFSLLEEA 518
            CL+ P                A +   +   +               +D RA ++LEEA
Sbjct: 581 ACLRQPQAPKGAAPAAFAAPFQAGSYAAAEGHAAEAMLQSNSRNPAKIFDARAVAILEEA 640

Query: 519 ASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLP-VE 577
            S G +P  S       +D R +   TA+VY+L I+  +  R A   K  ++ I++P  +
Sbjct: 641 ISLGALPQFSLANAQ-PLDLRYVPPCTAEVYVLAIVAAM-QRGAEPNKESDLIIMVPSYD 698

Query: 578 KTQIMS----------------------------------VGGEKTIDIAERTTQAIAAL 603
             +I S                                   GGE        T   +A +
Sbjct: 699 PAEIFSPSYGHDEPEPARESASFPSLRSARGKEQRRMAEETGGESEQRALSETGLGVAGM 758

Query: 604 LRRLGLPYQGNGSYGKIRINGLALKRWFQP--KLASPFSGKPGELSSLQ----LGKFITH 657
           LRR+GL    +   G+I + G  L RW +   + AS        +S+LQ    +G  I  
Sbjct: 759 LRRIGLWAVEDAIKGRITVPGKELVRWLRAADRAASSVRNASLSMSALQEQKWIGGSIAK 818

Query: 658 QQRNIRTG 665
           QQ+NIR G
Sbjct: 819 QQKNIRLG 826


>gi|307109972|gb|EFN58209.1| hypothetical protein CHLNCDRAFT_142073 [Chlorella variabilis]
          Length = 903

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 163/655 (24%), Positives = 280/655 (42%), Gaps = 116/655 (17%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLD-MDKVYHARFFNVCKSQKAIKEAFRFFKLVPN- 89
           Y  L    ++ E + ++++  R    D + ++ H RF     + +A+K+A RF +L+P  
Sbjct: 245 YEALCDGRQLDEALAVIKECIRASRTDVLGRLKHYRFLRPAATLRAVKQALRFVQLLPRQ 304

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
                T+NML+ VCA + D   A  V  ++Q AGL+ D  LYTTLI+ CA +G  +  F+
Sbjct: 305 YADARTYNMLLRVCAEAGDLRNALHVADMLQAAGLRMDSILYTTLISACAAAGDAEKAFQ 364

Query: 149 --------NVKPDRVVF------------------------------------------- 157
                    V  D++V+                                           
Sbjct: 365 LYGQMRADGVPADKMVYSSVVKACAQQIDRLPQSERRQQLVLLERAFSLVEDMKGAKIPT 424

Query: 158 -----NALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAR 211
                NAL+TA G++  + RAF+VL +M   +H    P+  T  +L+ ACA AG    A 
Sbjct: 425 DAAVWNALVTAAGRAAQLQRAFNVLEDM---IHFGTRPNDRTYASLIDACARAGDKGLAL 481

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDW---EFACSVYDDMTKKGVIPDEVFLSALI 268
            VY+   +     T  VY+ A++ C Q  D    E    +Y DM +  V PD      L+
Sbjct: 482 RVYRKAQREGCARTLMVYSAAVHACIQAHDGCDSEAVMGIYGDMQRSHVAPDNQLFGMLM 541

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
             AG +G ++   ++  E + +G+     + S+LM          +A  +Y  +++    
Sbjct: 542 KAAGASGNLQLVLDLHDEMEREGLRPCTGTESALMAVHIRNGQVPEAQAVYRSLRAAGQW 601

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P     NAL+ A  +  +L   + ++ DM   GL P+  T+S +  AC+R D+ E+ L +
Sbjct: 602 PHAYATNALLNAYANNFRLGDVVSLVCDMAQGGLRPDGFTFSAIFNACQRADEAELALDV 661

Query: 389 LSQAKEDGVIPNLVMFKCIIGMCSRRYEKA-------------------------RTLNE 423
               K  GV  +      ++  C  R  ++                           L E
Sbjct: 662 ARLMKLRGVRMDETHAVILLRTCYNRLRQSWVPGGYPPHRADAGAGGGPLLGSRRSQLRE 721

Query: 424 HVL-SFNSGRPQIENK------WTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 476
            +L +    R Q+E +      W + A  +YREA+ AG  P++ +++++L CL++ +   
Sbjct: 722 RLLEALTPRRRQVELREPVDVAWVAQAFGIYREAVAAGVKPSMHMLNRMLMCLRVAWEGK 781

Query: 477 IRERLVENLGVSADALKRSNLCSLIDGF--------------GEYDPRAFSLLEEAASFG 522
                  ++    +AL   +L   + G               G Y  +A S++EEA    
Sbjct: 782 QAAAGEGHIVGGPEALLPHSLPGALGGGVAPAIPRQEKIGVEGVYHVQAVSIMEEAIISN 841

Query: 523 IVPCVSFK-EIPVVVDARKLEIHTAKVYLLTILKGLRHRLAA-GAKLPNVNILLP 575
           +VP  SFK +    +D R +    A+VY+LT+L  ++ +  A    + NV  L+P
Sbjct: 842 VVP--SFKTDAAEPIDLRGMPPAVAEVYVLTVLSAMQRQCEARRVIIQNVVFLVP 894


>gi|326532656|dbj|BAJ89173.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 558

 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/168 (52%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           D S+ +  Y   +  GR+ +C+DLLE ME+KGLLDM K++HA F + CK Q+A+ EA RF
Sbjct: 391 DTSDYMRRYKSSLMDGRLKDCVDLLESMEQKGLLDMQKLHHASFLSACKKQRAVMEAVRF 450

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +L+ NP +STFNML+SVCA+SKD EGA QV+ L++EAGLK DCKLYTTLI+TCAK GKV
Sbjct: 451 CRLIENPKMSTFNMLLSVCANSKDFEGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKV 510

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           DAMFE         ++P+   + ALI  C ++G V +AF     M+++
Sbjct: 511 DAMFEVFHEMVSAGIEPNVNTYGALIDGCAKAGQVAKAFGAYGIMSSK 558



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 47/97 (48%)

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            + + ++ C+ + D+E A  V   + + G+ PD    + LI      GKV+A FE+  E 
Sbjct: 461 TFNMLLSVCANSKDFEGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEM 520

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
            + GI   + +Y +L+  C+ A    KA   Y  M S
Sbjct: 521 VSAGIEPNVNTYGALIDGCAKAGQVAKAFGAYGIMSS 557



 Score = 46.2 bits (108), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 43/85 (50%)

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +++ L+  C+N+K+++ AL++   +K   LKP       LI+      ++    EV  +M
Sbjct: 461 TFNMLLSVCANSKDFEGALQVMVLLKEAGLKPDCKLYTTLISTCAKCGKVDAMFEVFHEM 520

Query: 358 KSLGLCPNTITYSILLVACERKDDV 382
            S G+ PN  TY  L+  C +   V
Sbjct: 521 VSAGIEPNVNTYGALIDGCAKAGQV 545


>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 755

 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 135/521 (25%), Positives = 239/521 (45%), Gaps = 45/521 (8%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-----NPTLS 93
           G+  E + +L++M+  G++       A     C  Q   ++A    + +P     +P + 
Sbjct: 124 GKWREALGILDEMKEGGVVCAHSYTTA--ITTCGRQGQWEKALELLREIPEQEGVSPNVF 181

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
            +N  +  C S    E A  +LR + +  +  D   Y + I  C + G+ + +       
Sbjct: 182 CYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREM 241

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               + PD + +N++IT CG+ G    A  VL EM+A+   + P+ I+    ++AC  +G
Sbjct: 242 PSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAK--GLTPETISYNMAIRACGRSG 299

Query: 206 QVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           +   A EV + +    +  TP+V  Y  AI  C   G WE +  + D+M  +GV P+ + 
Sbjct: 300 RWKEAVEVLRQMESQGV--TPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAPNTIH 357

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            ++ I   G  G+ E A E+L+E    G++    S++S + AC+ +  W++ALEL + M 
Sbjct: 358 FNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMP 417

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           + +LKP   + N+ I A   G Q    +E+   M + GL PN I+ +I + AC  +   +
Sbjct: 418 AKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQ 477

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL---------NEHVLSFNSGR 432
            GL LL Q    G+ PN++ +   I  C +  ++EKA  L             +++NS  
Sbjct: 478 EGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAI 537

Query: 433 PQI--ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL----- 485
                  +W   A+ + RE    G  P  +V+S          N    ER VE L     
Sbjct: 538 AACSKRGRWKE-AVALLREMPGQGLTP--DVISYTAAIDAYGKNGQW-ERAVELLRQMPT 593

Query: 486 -GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
            G++ + +  +++       GE++ +A  LL+E     + P
Sbjct: 594 KGLTPNVITYNSVIKACGRGGEWE-KALDLLKELKETAVAP 633



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 186/408 (45%), Gaps = 19/408 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN  I    R G+    I LL +M   GL   D + +      C  +   KEA      
Sbjct: 217 SYNSAIKACGRGGQWERVIGLLREMPSVGLTP-DAITYNSVITGCGKEGQWKEALSVLTE 275

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   ++NM +  C  S   + A +VLR ++  G+  D   Y   I  C   G+
Sbjct: 276 MSAKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQ 335

Query: 143 ----VDAMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
               VD + E     V P+ + FN+ I ACG+ G  ++A ++L E+ A    + PD  + 
Sbjct: 336 WETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTA--LGLTPDATSF 393

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            + + AC  +G+   A E+ K +    +K     Y  AI  C + G WE A  +   M  
Sbjct: 394 NSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQMPT 453

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           KG+ P+ +  +  I   G  G+ +   E+L++   QG++  +I+Y+S +  C     W+K
Sbjct: 454 KGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEK 513

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           AL+L   MK + + P   T N+ I A     +  + + +L +M   GL P+ I+Y+  + 
Sbjct: 514 ALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAAID 573

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
           A  +    E  + LL Q    G+ PN++ +  +I  C R  E  + L+
Sbjct: 574 AYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALD 621



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 199/415 (47%), Gaps = 21/415 (5%)

Query: 22  AHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           +  V+  + SY+  I+     G+    +DLL++M  +G+   + ++       C      
Sbjct: 313 SQGVTPDVISYDAAIKACGGGGQWETSVDLLDEMAGRGVAP-NTIHFNSAIVACGKGGQW 371

Query: 78  KEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           ++A    + V      P  ++FN  ++ C  S   + A ++L+ +    LK D   Y + 
Sbjct: 372 EKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSA 431

Query: 134 ITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I  C K G+ +   E         + P+ +  N  I ACG+ G      ++L +M A+  
Sbjct: 432 IEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQ-- 489

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + P+ IT  + +K C   GQ ++A ++   + +  +      Y  AI  CS+ G W+ A
Sbjct: 490 GLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEA 549

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
            ++  +M  +G+ PD +  +A ID  G  G+ E A E+L++   +G++  +I+Y+S++ A
Sbjct: 550 VALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKA 609

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           C     W+KAL+L + +K   + P + + N  I+A     +  + +++L +M + GL P+
Sbjct: 610 CGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPD 669

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
            I+Y+  + AC  + + E  L LL+     GV P    +   I  C +  R E+A
Sbjct: 670 VISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRREEA 724



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 194/420 (46%), Gaps = 25/420 (5%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  ++ +  SYN  IR     GR  E +++L  ME +G+   D + +      C      
Sbjct: 278 AKGLTPETISYNMAIRACGRSGRWKEAVEVLRQMESQGVTP-DVISYDAAIKACGGGGQW 336

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           + +      +      P    FN  +  C      E A ++LR V   GL  D   + + 
Sbjct: 337 ETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSA 396

Query: 134 ITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I  C KSG+     E         +KPD + +N+ I ACG+ G  + A ++  +M     
Sbjct: 397 IAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQM--PTK 454

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDW 242
            + P+ I+    ++AC   G+  R +E  +++ +   +G TP V  Y  AI  C + G W
Sbjct: 455 GLTPNVISSNIAIRAC---GERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQW 511

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           E A  +   M +  + PD +  ++ I      G+ + A  +L+E   QG++  +ISY++ 
Sbjct: 512 EKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYTAA 571

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           + A      W++A+EL   M +  L P V T N++I A   G +  K +++L ++K   +
Sbjct: 572 IDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAV 631

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
            P+ ++Y++ + AC ++   E  L LL +   +G+ P+++ +   I  C+   E  + L 
Sbjct: 632 APDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEKALG 691



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 171/376 (45%), Gaps = 21/376 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTL 92
           + G+  + ++LL ++   GL   D          C      KEA    K +P     P  
Sbjct: 367 KGGQWEKAVELLREVTALGLTP-DATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDA 425

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---- 148
            ++N  +  C      E A ++ R +   GL  +       I  C + G+     E    
Sbjct: 426 ISYNSAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQ 485

Query: 149 ----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                + P+ + +N+ I  CG+ G  ++A D+LA+M      + PD IT  + + AC+  
Sbjct: 486 MPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELA--MTPDSITYNSAIAACSKR 543

Query: 205 GQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           G   R +E   ++ +   +G TP+V  YT AI+   + G WE A  +   M  KG+ P+ 
Sbjct: 544 G---RWKEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNV 600

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  +++I   G  G+ E A ++L+E K   ++  ++SY+  + AC     W++AL+L   
Sbjct: 601 ITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLRE 660

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M +  L P V +  + I A     +  K + +L+ M + G+ P   +YS+ + AC +   
Sbjct: 661 MPAEGLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGR 720

Query: 382 VEVGLMLLSQAKEDGV 397
            E  + L+ +  + G+
Sbjct: 721 REEAVCLVREMAQRGL 736



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 167/363 (46%), Gaps = 23/363 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           S+N  I    + GR  E ++LL++M  K  L  D + +      C      + A    + 
Sbjct: 392 SFNSAIAACTKSGRWKEALELLKEMPAK-RLKPDAISYNSAIEACGKGGQWEMALELRRQ 450

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +P     P + + N+ +  C      +   ++LR +   GL  +   Y + I TC K G+
Sbjct: 451 MPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQ 510

Query: 143 VDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
            +   +         + PD + +N+ I AC + G    A  +L EM  +   + PD I+ 
Sbjct: 511 WEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQ--GLTPDVISY 568

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDM 252
            A + A    GQ +RA E+ + +    +  TP V  Y   I  C + G+WE A  +  ++
Sbjct: 569 TAAIDAYGKNGQWERAVELLRQMPTKGL--TPNVITYNSVIKACGRGGEWEKALDLLKEL 626

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            +  V PD +  +  I   G  G+ E A ++L+E   +G++  +ISY+S + AC+    W
Sbjct: 627 KETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEW 686

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +KAL L   M +  + PT ++ +  I A   G +  + + ++ +M   GL    I+ S++
Sbjct: 687 EKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRREEAVCLVREMAQRGLSHRNISNSLI 746

Query: 373 LVA 375
           + A
Sbjct: 747 VEA 749



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 132/299 (44%), Gaps = 31/299 (10%)

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ- 290
           A+   + TG W  A  + D+M + GV+    + +A I   G  G+ E A E+L+E   Q 
Sbjct: 116 ALREAATTGKWREALGILDEMKEGGVVCAHSYTTA-ITTCGRQGQWEKALELLREIPEQE 174

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G+S  +  Y+S + AC +   W+ A+ L   M   ++ P   + N+ I A   G Q  + 
Sbjct: 175 GVSPNVFCYNSAIEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERV 234

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
           + +L +M S+GL P+ ITY+ ++  C ++   +  L +L++    G+ P  + +   I  
Sbjct: 235 IGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRA 294

Query: 411 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTV----EVVSKVL 466
           C R                SGR      W   A+ V R+    G  P V      +    
Sbjct: 295 CGR----------------SGR------WKE-AVEVLRQMESQGVTPDVISYDAAIKACG 331

Query: 467 GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
           G  Q   + D+ + +    GV+ + +  ++        G+++ +A  LL E  + G+ P
Sbjct: 332 GGGQWETSVDLLDEMA-GRGVAPNTIHFNSAIVACGKGGQWE-KAVELLREVTALGLTP 388



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 124/270 (45%), Gaps = 23/270 (8%)

Query: 22  AHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  ++  + +YN  I+     G+  + +DLL  M+   +   D + +      C  +   
Sbjct: 488 AQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTP-DSITYNSAIAACSKRGRW 546

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           KEA    + +P     P + ++   +     +   E A ++LR +   GL  +   Y ++
Sbjct: 547 KEAVALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSV 606

Query: 134 ITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I  C + G+ +   +         V PD + +N  I+ACG+ G  + A D+L EM AE  
Sbjct: 607 IKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAE-- 664

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + PD I+  + ++AC   G+ ++A  +  ++  + +  T   Y++AI  C + G  E A
Sbjct: 665 GLTPDVISYTSAIRACNAEGEWEKALGLLNLMGAHGVSPTATSYSLAIEACGKGGRREEA 724

Query: 246 CSVYDDMTKKGV----IPDEVFLSALIDFA 271
             +  +M ++G+    I + + + AL D A
Sbjct: 725 VCLVREMAQRGLSHRNISNSLIVEALGDDA 754


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 195/388 (50%), Gaps = 21/388 (5%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTF 95
           R  E + LL  M+ +G+     VY A   + C+     + A    K +P     P + T+
Sbjct: 236 RWKEAVGLLRSMKGQGVKPNVIVYSA-AISACRKGGQWETAVDLLKEMPAVGLAPDVITY 294

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MFE 148
           + ++  CA     E AF++L  +   G+ A+   Y+ +I  CAK G+ +        M E
Sbjct: 295 STVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQE 354

Query: 149 N-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           N V PD + +++ I+AC + G  + A  +L EM  E   V P+ I+ G ++ ACA  G  
Sbjct: 355 NGVAPDVITYSSTISACAKKGQWEEAVGLLREMPME--GVTPNAISYGIVISACAKRG-- 410

Query: 208 DRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
            R RE   ++ +    G P     Y+ AI+ C+Q   WE A  +  +M   G+ P+ +  
Sbjct: 411 -RWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISY 469

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++ ID     G+ + A E+L+E    G++  +I+YS+++ +C+  + W++AL+L+  M+ 
Sbjct: 470 NSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQR 529

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             + P V + N  I A   G    + ++VL +M ++GL P+ I+Y   + AC + D  + 
Sbjct: 530 QGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKE 589

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
            + LL +    G+ P+ + ++  +  CS
Sbjct: 590 IIDLLREMSTVGLTPDAISYRFAMSACS 617



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 187/395 (47%), Gaps = 19/395 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTL 92
           + G+  E + LL +M+  G+   D + ++   + C  +   +EA    + +P     P  
Sbjct: 338 KWGQWEEAVALLREMQENGVAP-DVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNA 396

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF----- 147
            ++ +++S CA       A  +L+ +Q  G+  D   Y+  I  CA++ + +        
Sbjct: 397 ISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLRE 456

Query: 148 ---ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                + P+ + +N+ I AC ++G    A ++L EM A  H + PD IT  A++ +CA  
Sbjct: 457 MPATGLTPNVISYNSAIDACAKTGRSKIAVELLREMPA--HGLAPDVITYSAVIASCAMG 514

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            Q + A ++++ + +  I  TP+V +   AIN C+Q G WE A  V  +M   G++PD +
Sbjct: 515 RQWEEALDLFREMQRQGI--TPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAI 572

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
                ID      + +   ++L+E    G++   ISY   M ACS    W++AL L   M
Sbjct: 573 SYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDM 632

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            ++ L P V T N+ I A   G +  +   +L  M + GL P+  +++  + AC   D  
Sbjct: 633 LAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDACGNGDQW 692

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK 417
              + +L + +  GV PN   +   +  C R  EK
Sbjct: 693 GTAVEVLFEMRALGVSPNEATYLTAMYACKRCGEK 727



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 197/411 (47%), Gaps = 43/411 (10%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + VKPD   +++ I ACG +   +RA ++LA M A   P  PD +T  + + ACA   + 
Sbjct: 180 QGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTP--PDVLTYSSAIAACAKVSRW 237

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             A  + + +    +K    VY+ AI+ C + G WE A  +  +M   G+ PD +  S +
Sbjct: 238 KEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTV 297

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ID     G+ E AF +L E   +G+   II+YS ++GAC+    W++A+ L   M+   +
Sbjct: 298 IDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGV 357

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P V T ++ I+A     Q  + + +L +M   G+ PN I+Y I++ AC ++      + 
Sbjct: 358 APDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAID 417

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSR--RYEK---------ARTLNEHVLSFNS------ 430
           LL + +  GV P+++ +   I  C++  R+E+         A  L  +V+S+NS      
Sbjct: 418 LLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACA 477

Query: 431 --GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD-----IRERLVE 483
             GR +I       A+ + RE    G  P V   S V+    +    +      RE  ++
Sbjct: 478 KTGRSKI-------AVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFRE--MQ 528

Query: 484 NLGVSADALKRS---NLCSLIDGFGEYDPRAFSLLEEAASFGIVP-CVSFK 530
             G++ D +  +   N C+     G +   A  +L E  + G+VP  +S++
Sbjct: 529 RQGITPDVVSCNTAINACAQ----GGWWEEALDVLGEMPTMGLVPDAISYR 575



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/507 (23%), Positives = 226/507 (44%), Gaps = 48/507 (9%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           G   + +D+L+ M+ +G+   D   ++     C + +  + A      +      P + T
Sbjct: 165 GDWRKALDVLDRMQEQGV-KPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLT 223

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK--- 151
           ++  ++ CA     + A  +LR ++  G+K +  +Y+  I+ C K G+ +   + +K   
Sbjct: 224 YSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMP 283

Query: 152 -----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
                PD + ++ +I AC + G  + AF +L EM      V  + IT   ++ ACA  GQ
Sbjct: 284 AVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEM--PTKGVVANIITYSIVIGACAKWGQ 341

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            + A  + + + +  +      Y+  I+ C++ G WE A  +  +M  +GV P+ +    
Sbjct: 342 WEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGI 401

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           +I      G+   A ++LQE +  G+   +I+YS+ + AC+ A  W++AL L   M +  
Sbjct: 402 VISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATG 461

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           L P V + N+ I A     +    +E+L +M + GL P+ ITYS ++ +C      E  L
Sbjct: 462 LTPNVISYNSAIDACAKTGRSKIAVELLREMPAHGLAPDVITYSAVIASCAMGRQWEEAL 521

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 446
            L  + +  G+ P++V     I  C+                       +  W   AL V
Sbjct: 522 DLFREMQRQGITPDVVSCNTAINACA-----------------------QGGWWEEALDV 558

Query: 447 YREAIVAGTIP-TVEVVSKVLGCLQLPYNADIRERLVE--NLGVSADALKRS---NLCSL 500
             E    G +P  +   + +  C +     +I + L E   +G++ DA+      + CS 
Sbjct: 559 LGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSACS- 617

Query: 501 IDGFGEYDPRAFSLLEEAASFGIVPCV 527
           +DG  +    A  LL +  + G+ P V
Sbjct: 618 VDGLWK---EALVLLRDMLAVGLSPDV 641



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 102/186 (54%), Gaps = 2/186 (1%)

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           Q GDW  A  V D M ++GV PD    S+ I   G+A + E A E+L     +G    ++
Sbjct: 163 QYGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVL 222

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +YSS + AC+    W++A+ L   MK   +KP V   +A I+A   G Q    +++L +M
Sbjct: 223 TYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEM 282

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RY 415
            ++GL P+ ITYS ++ AC ++   E    LL +    GV+ N++ +  +IG C++  ++
Sbjct: 283 PAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQW 342

Query: 416 EKARTL 421
           E+A  L
Sbjct: 343 EEAVAL 348



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 61/225 (27%), Positives = 110/225 (48%), Gaps = 2/225 (0%)

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           A ++     G   +A +V   + +  +K   + Y+ AI  C     WE A  +   M  +
Sbjct: 156 ATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAAR 215

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  PD +  S+ I       + + A  +L+  K QG+   +I YS+ + AC     W+ A
Sbjct: 216 GTPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETA 275

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           ++L + M ++ L P V T + +I A     Q      +L +M + G+  N ITYSI++ A
Sbjct: 276 VDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIVIGA 335

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKA 418
           C +    E  + LL + +E+GV P+++ +   I  C+++  +E+A
Sbjct: 336 CAKWGQWEEAVALLREMQENGVAPDVITYSSTISACAKKGQWEEA 380



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/266 (24%), Positives = 111/266 (41%), Gaps = 29/266 (10%)

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
           L A +  A   G    A ++L   + QG+     +YSS + AC NA+ W++A+EL   M 
Sbjct: 154 LKATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMA 213

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           +    P V T ++ I A     +  + + +L  MK  G+ PN I YS  + AC +    E
Sbjct: 214 ARGTPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWE 273

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLA 443
             + LL +    G+ P+++ +  +I  C++R                       +W   A
Sbjct: 274 TAVDLLKEMPAVGLAPDVITYSTVIDACAKR----------------------GQWEP-A 310

Query: 444 LMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCS 499
             +  E    G +  +   S V+G      Q      +   + EN GV+ D +  S+  S
Sbjct: 311 FRLLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQEN-GVAPDVITYSSTIS 369

Query: 500 LIDGFGEYDPRAFSLLEEAASFGIVP 525
                G+++  A  LL E    G+ P
Sbjct: 370 ACAKKGQWE-EAVGLLREMPMEGVTP 394


>gi|145347434|ref|XP_001418171.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144578400|gb|ABO96464.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 889

 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 185/803 (23%), Positives = 314/803 (39%), Gaps = 170/803 (21%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFF 84
           SE  + +  L+R  R+ + +DLL+ M+ +G+ ++ + V H  FF+ C+S + +   F F 
Sbjct: 25  SEYFYIFRELVRCKRLHDSVDLLKHMKERGVKELGRRVSHRDFFSACRSLRVVSVGFEFV 84

Query: 85  KLVPNPTLSTFNMLMSVCASSKD-----------------------------------SE 109
            ++ +  +  +NML+  CA++ D                                    E
Sbjct: 85  DVIESGDIRPYNMLVHACATAGDLQAATLAIEKMKNAGFEPDLQAYTTLLGACSKCGDVE 144

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKS----------GKVDA------------MF 147
            AF+V   ++ AG + + K Y ++I   ++            +VD+            +F
Sbjct: 145 RAFEVYAELKRAGFEPNEKTYGSMIDAISRDLATSLKGSRKRRVDSEHVRSTLQSCFMIF 204

Query: 148 E-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP------VDPDHITIGA 196
           E     N+K D++V N+L+T C ++  V        E  A VH        + D     A
Sbjct: 205 EEIKTTNMKLDKIVMNSLLTVCARAAVVPSVRKEACEKVAMVHDEMIERGFELDSYAYQA 264

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+          RA E +  +H   I GT EVYT+ I    + G  + A  ++  M +  
Sbjct: 265 LICCALAEKNYTRAFEYFDEMHDAGINGTTEVYTVMIRAYGKLGKADKAKLIWYAMLEDN 324

Query: 257 VIPDEV-----------------------------------FLSALIDFAGHAGKVEAAF 281
           +IPD++                                     S L   A   G      
Sbjct: 325 IIPDQMSYATMMRLALLDEDDDFCDELMTSMRRNRVRPGPELYSTLTGVAARQGDASQVE 384

Query: 282 EILQEAKNQGISVGI-----------------------------------ISYSSLMGAC 306
           EI+Q AK +G+   I                                   ISY  L+ A 
Sbjct: 385 EIMQNAKKRGVVAPIECYNSLIAAHARADRPDLAVEAAGKLEAAGYELDAISYEGLIFAY 444

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
           + A++ ++A  ++E +    ++PT  T N L+ A      + +   ++S MK  G   ++
Sbjct: 445 AFARDVEEASNMFERLLESGIRPTFPTFNCLVAAHARSGDMDEACRLVSVMKQHGYVEDS 504

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDG-----------VIPNLVMFKCIIGMCSRRY 415
           IT+  LL+   +  D+E    +  +++  G           +   LV  + +  M +R  
Sbjct: 505 ITWRELLLGSVQSGDIEAAWKMYKESRASGNADSERALNTILGQTLVHIRSLTDMKNRSN 564

Query: 416 EKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA 475
            K         SF+     I  +WT  A+  + EA +AG  P VE +S +L CL+ P   
Sbjct: 565 GKPNEFG----SFDDEGDYIAQEWTERAVAAFHEATLAGIKPRVETLSTMLACLRPP--- 617

Query: 476 DIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVV 535
              E+        A A+      S  D    Y  +A  + EEA   GIVP  S  +   V
Sbjct: 618 STDEQNAAEYSEVARAVSHET-SSHEDAARYYPSQALIMYEEAQGLGIVPKFSRDDEDFV 676

Query: 536 VDARKLEIHTAKVYLLTILKGLRHRLAA---GAKLPNVNILLPVEKTQIMSVGGEKTIDI 592
            D R+     A+V LLT L+ +R R  A    A +P + I +  ++ +++ +  E+ +D 
Sbjct: 677 YDIREFPPAAAEVMLLTWLRVVRRRTDAHGLDATIPTMTIRVRADE-EVVRMIKEQHMDR 735

Query: 593 AE-------RTTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASPFSGKPGE 645
            +       +T + +  LLRRL + Y G    G I ++G AL RW Q  +   F    G 
Sbjct: 736 IDHSLGRLCKTGERLLTLLRRLRINYGGGLQEGTIELSGHALGRWLQGFVPGDFGNHTGS 795

Query: 646 L-SSLQLGKFITHQQRNIRTGNL 667
           + S   L   +  Q   IR  + 
Sbjct: 796 VFSEHSLSGGVRDQAMRIRANSF 818


>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 607

 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/468 (27%), Positives = 224/468 (47%), Gaps = 52/468 (11%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-AMF----- 147
           ++ M ++ C      E A ++LR +   G   D   Y+ +I  CAK G+   A+F     
Sbjct: 35  SYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEM 94

Query: 148 --ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             + + PD   + A I AC + G    A D+L EM A    V P+ I   + + +CA AG
Sbjct: 95  PTKGIAPDARSYGAAINACARGGRWKIALDLLREMLA--RDVTPNVIIYNSAINSCAKAG 152

Query: 206 QVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           Q + A  + K +    +   P+V  Y+ AI+ C + G WE A  +++DM   GV PD + 
Sbjct: 153 QWEIAVSLVKEMATVGL--APDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVIT 210

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
             + I    + G+ + A  +L++    G++  +ISYSS++ AC+    W+ AL+L   MK
Sbjct: 211 YGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMK 270

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           +++L P + T NA I A   G +  + +++L +M ++GL P+ ++YS ++ AC + D  +
Sbjct: 271 AMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWK 330

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL---------NEHVLSFNSGR 432
             + +L +    G+ PN + +   I  C++  ++++A+ L          + V+ +NS  
Sbjct: 331 EAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAI 390

Query: 433 PQIEN--KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSAD 490
                  +W   AL + RE      +PTV + + V       Y++ I      NL + A 
Sbjct: 391 AACAKGEQWKE-ALALLRE------MPTVGLHTTVFS-----YSSAIDACGKGNLWIKAK 438

Query: 491 ALKR---------SNLC--SLIDGFGEYD--PRAFSLLEEAASFGIVP 525
            L R         + +C  S ID  G  D    A  LL E  + G+ P
Sbjct: 439 ELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSP 486



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/439 (25%), Positives = 199/439 (45%), Gaps = 50/439 (11%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           A DV     + +   R GR  E ++L EDM   G+   D + +      C +    KEA 
Sbjct: 170 APDVISYSSAISACGRGGRWEEALELFEDMRTSGVAP-DVITYGSAIAACANGGRWKEAV 228

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              + +P     P + +++ +++ CA     + A  +LR ++   L  +   Y   I  C
Sbjct: 229 SLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDAC 288

Query: 138 AKSGK----VDAMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
           AK G+    +D + E     + PD V ++++I AC +      A D+L EM      + P
Sbjct: 289 AKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDILREM--PTVGLSP 346

Query: 190 DHITIGALMKACANAGQVDRARE---------VYKMIHKYN------------------I 222
           + I+  + + ACA  GQ   A+          V + +  YN                  +
Sbjct: 347 NAISYNSAIDACAKGGQWKEAKGLLREMPTAGVTQRVIGYNSAIAACAKGEQWKEALALL 406

Query: 223 KGTPEV--------YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           +  P V        Y+ AI+ C +   W  A  +  +M   G+ P+EV  ++ ID  G  
Sbjct: 407 REMPTVGLHTTVFSYSSAIDACGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRG 466

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
            + E A ++L+E    G+S  + SYSS + AC+    W++AL + + M +  L P +   
Sbjct: 467 DQWEEAVDLLREMPTVGLSPDVFSYSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLICY 526

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N+ I A   G +    + +L +M++ GL PN I+YS  + AC R    + G+ LL + + 
Sbjct: 527 NSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYSSAIDACVRGGQWKEGIALLEEMRG 586

Query: 395 DGVIPNLVMFKCIIGMCSR 413
            GV+P+++ +  ++  C++
Sbjct: 587 SGVVPDVITYHALMVTCAK 605



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 204/436 (46%), Gaps = 30/436 (6%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A DV+  +  YN  I    + G+    + L+++M   GL   D + ++   + C      
Sbjct: 131 ARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAP-DVISYSSAISACGRGGRW 189

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +EA   F+ +      P + T+   ++ CA+    + A  +LR +   GL  +   Y+++
Sbjct: 190 EEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSV 249

Query: 134 ITTCAKSGK----VDAMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           IT CAK G+    +D + E     + P+ + +NA I AC + G    A D+L EM     
Sbjct: 250 ITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGL 309

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
           P  PD ++  +++ AC+   +   A ++ + +    +      Y  AI+ C++ G W+ A
Sbjct: 310 P--PDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEA 367

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +  +M   GV    +  ++ I       + + A  +L+E    G+   + SYSS + A
Sbjct: 368 KGLLREMPTAGVTQRVIGYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDA 427

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           C     W KA EL   M ++ L P     N+ I A   GDQ  + +++L +M ++GL P+
Sbjct: 428 CGKGNLWIKAKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPD 487

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYE------- 416
             +YS  + AC + D  +  L +L +    G+ P+L+ +   I  CS+  R++       
Sbjct: 488 VFSYSSAIAACAKGDQWKEALAVLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLG 547

Query: 417 --KARTLNEHVLSFNS 430
             +A  L  +++S++S
Sbjct: 548 EMRAAGLTPNIISYSS 563



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 201/438 (45%), Gaps = 48/438 (10%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRA 173
           G   D K Y   IT C + G+ +           E   PD   ++A+I AC + G    A
Sbjct: 28  GWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMA 87

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
              L EM      + PD  + GA + ACA  G+   A ++ + +   ++     +Y  AI
Sbjct: 88  VFFLMEM--PTKGIAPDARSYGAAINACARGGRWKIALDLLREMLARDVTPNVIIYNSAI 145

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           N C++ G WE A S+  +M   G+ PD +  S+ I   G  G+ E A E+ ++ +  G++
Sbjct: 146 NSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVA 205

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
             +I+Y S + AC+N   W++A+ L   + ++ L P V + +++ITA     Q    +++
Sbjct: 206 PDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISYSSVITACAKEGQWKIALDL 265

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           L +MK++ L PN ITY+  + AC +    +  + LL +    G+ P++V +  +I  CS+
Sbjct: 266 LREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSK 325

Query: 414 --RYEKA---------RTLNEHVLSFNSGRPQIE--NKWTSLALMVYREAIVAGTIPTVE 460
             R+++A           L+ + +S+NS         +W   A  + RE      +PT  
Sbjct: 326 GDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKE-AKGLLRE------MPTAG 378

Query: 461 VVSKVLGCLQLPYNADIRERLVENLGVSADALKRS-----------NLCSLID--GFGEY 507
           V  +V+G     YN+ I           A AL R            +  S ID  G G  
Sbjct: 379 VTQRVIG-----YNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAIDACGKGNL 433

Query: 508 DPRAFSLLEEAASFGIVP 525
             +A  LL E A+ G+ P
Sbjct: 434 WIKAKELLREMATVGLAP 451



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 190/389 (48%), Gaps = 14/389 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R G   + +  ++ M++     +D+  +      C      ++A R  + +P     P L
Sbjct: 9   RSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPDL 68

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----VDAMFE 148
           S ++ ++  CA     + A   L  +   G+  D + Y   I  CA+ G+    +D + E
Sbjct: 69  SAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACARGGRWKIALDLLRE 128

Query: 149 ----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
               +V P+ +++N+ I +C ++G  + A  ++ EM A V  + PD I+  + + AC   
Sbjct: 129 MLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEM-ATVG-LAPDVISYSSAISACGRG 186

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G+ + A E+++ +    +      Y  AI  C+  G W+ A S+   +   G+ P+ +  
Sbjct: 187 GRWEEALELFEDMRTSGVAPDVITYGSAIAACANGGRWKEAVSLLRKIPTVGLTPNVISY 246

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           S++I      G+ + A ++L+E K   ++  II+Y++ + AC+    W++A++L   M +
Sbjct: 247 SSVITACAKEGQWKIALDLLREMKAMRLAPNIITYNAAIDACAKGGRWKEAIDLLREMPT 306

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
           + L P V + +++I A   GD+  + +++L +M ++GL PN I+Y+  + AC +    + 
Sbjct: 307 VGLPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKE 366

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
              LL +    GV   ++ +   I  C++
Sbjct: 367 AKGLLREMPTAGVTQRVIGYNSAIAACAK 395


>gi|303279733|ref|XP_003059159.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458995|gb|EEH56291.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1169

 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 169/614 (27%), Positives = 267/614 (43%), Gaps = 44/614 (7%)

Query: 90   PTLSTFNMLMSVCA--------SSKDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAK 139
            P     N L+S C         +S+    AF+V    + +   L+ D   Y +LI  CA 
Sbjct: 412  PDACVLNSLLSACGRAAVVKPLASEALRRAFEVYDEFEASAGVLRCDAYTYASLIQACAN 471

Query: 140  SGKVD---AMFENVKPDRV-----VFNALITAC---------GQSGAVDRAFDVLAEMNA 182
            +G+ +   A++E +  ++V     V+ A I AC         G++  + RA  V  +M  
Sbjct: 472  AGEPERGLALYERMAGEKVRRTKEVYAAAIHACAGSRRAASGGRAADLRRALRVWDDMRR 531

Query: 183  EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
                  PD +    LM   A AG+   A EV   + +  +  T EV+       ++ GD 
Sbjct: 532  SADRTTPDAMLYATLMDVAARAGERGVAAEVMDEMERDGVAPTTEVFATMAGIAAREGDV 591

Query: 243  EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
                 V D+MT++G  P     +ALI  A   G V AA +  +     G+S  + ++ +L
Sbjct: 592  AGVEKVLDEMTERGSPPPISAFNALIAAAARRGDVAAATDACERLAAAGLSKDVNTHENL 651

Query: 303  MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
            +   ++A++   A   Y+   + +++PT    NAL+ A   G  L +T E +  MK+ G 
Sbjct: 652  IRTAAHARDASAAWAFYDDALAAEMEPTRPMFNALVYASGRGGDLKRTFEAVDAMKARGH 711

Query: 363  CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
             P+  T+  LL +C R  D  +       +++ G  P+ V    IIG+      K R L 
Sbjct: 712  VPDETTWRELLSSCARHGDAALAWDTYKASRKAGTEPSEVALNIIIGVT---LMKIRELT 768

Query: 423  EHVLSFNSGRPQIENK-WTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLP----YNADI 477
            +      +     E K W   A+ VY EA VAG  P +   S +L CL+ P      A  
Sbjct: 769  DPTRGGGAKEGDREWKEWADRAVAVYHEATVAGVRPRLATFSAMLACLRPPTIPALQAVD 828

Query: 478  RERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVD 537
            R+    +   +          S  D    Y  RA  L EEA + G+VP     +     D
Sbjct: 829  RDAGSGSAAAALAHAVSHEDTSHEDARKYYPLRALILYEEAQALGVVPKFHM-DRDETYD 887

Query: 538  ARKLEIHTAKVYLLTILKGLRHRLAAGA---KLPNVNI-LLPVEKTQIMSVGGEKTIDIA 593
             R+     A+V +LT+L+  R    A A    LPNV + +L  E+ + MS  G++     
Sbjct: 888  IREFPPAAAEVAVLTLLRVFRRNSDAAAGDVDLPNVTLRVLSDEEHEEMSASGDQHDQRL 947

Query: 594  ERTTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASPFSGKPGE----LSSL 649
             RT   +  LLRRL   Y G+ S G++ ++G  +KRW + K +   S   GE     +  
Sbjct: 948  ARTGDRVVVLLRRLRFNYGGSLSRGRVELSGNVIKRWLKAKPSPSPSSHRGEGALPGTEP 1007

Query: 650  QLGKFITHQQRNIR 663
            +L   +  Q RNIR
Sbjct: 1008 RLASSLQDQARNIR 1021


>gi|428186270|gb|EKX55120.1| hypothetical protein GUITHDRAFT_53115, partial [Guillardia theta
           CCMP2712]
          Length = 363

 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 157/322 (48%), Gaps = 19/322 (5%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENV--------------K 151
           E A +VL+ +++ GL      Y   ++   ++G+     +MF++V              +
Sbjct: 1   EAALEVLKSIEKEGLTPTRVSYNAAMSALTRNGRWREALSMFDSVFSQTERNKVAARSLR 60

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           PD V F+  I+AC + G   RA ++  EM  E   ++P+  T  AL+ AC   GQV +A 
Sbjct: 61  PDTVTFSTAISACAKGGEWQRAMNMYHEM--EAQGIEPNEFTFAALITACEKGGQVSKAF 118

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           EV++ +    I G    +T AI+ C + GDW+ A  + ++M  KG+ P+    SA I   
Sbjct: 119 EVFERMQARGIVGNVYTFTAAISSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISAC 178

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
             A +   A  +L+   N+ I   II YS++M AC  A  W+ A  +++ MK   L P V
Sbjct: 179 EKAAEARPALGLLERMTNEKIKPDIIVYSAVMAACGKAGLWEPAARIFQKMKREGLTPDV 238

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
              + LI A     +  + +EV   M+  G+ PN I Y+  + AC +  +    L LL +
Sbjct: 239 VAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAACAKAGEWRRSLGLLER 298

Query: 392 AKEDGVIPNLVMFKCIIGMCSR 413
            K D + P+ V +  +I   SR
Sbjct: 299 MKADKLRPDAVAYNFVISALSR 320



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 152/370 (41%), Gaps = 61/370 (16%)

Query: 31  SYNR----LIRQGRISECIDLLEDM----ERKGL----LDMDKVYHARFFNVCKSQKAIK 78
           SYN     L R GR  E + + + +    ER  +    L  D V  +   + C      +
Sbjct: 21  SYNAAMSALTRNGRWREALSMFDSVFSQTERNKVAARSLRPDTVTFSTAISACAKGGEWQ 80

Query: 79  EAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
            A   +  +      P   TF  L++ C        AF+V   +Q  G+  +   +T  I
Sbjct: 81  RAMNMYHEMEAQGIEPNEFTFAALITACEKGGQVSKAFEVFERMQARGIVGNVYTFTAAI 140

Query: 135 TTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
           ++C K G          + + + ++P+   ++A I+AC ++     A  +L  M  E   
Sbjct: 141 SSCEKLGDWQRALKLLEEMIAKGIQPNLQAYSAAISACEKAAEARPALGLLERMTNE--K 198

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + PD I   A+M AC  AG                                    WE A 
Sbjct: 199 IKPDIIVYSAVMAACGKAGL-----------------------------------WEPAA 223

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            ++  M ++G+ PD V  S LI     AG+   A E+ Q  +  G+   +I+Y+  + AC
Sbjct: 224 RIFQKMKREGLTPDVVAYSTLIQAYQRAGEWSRALEVFQLMEKAGVRPNVIAYTEAIAAC 283

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
           + A  W+++L L E MK+ KL+P     N +I+AL  G Q    + +L  ++     PN 
Sbjct: 284 AKAGEWRRSLGLLERMKADKLRPDAVAYNFVISALSRGGQWDAGLTLLQMLEEDEAQPNI 343

Query: 367 ITYSILLVAC 376
            TY  ++ AC
Sbjct: 344 STYCTVIKAC 353


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 200/409 (48%), Gaps = 25/409 (6%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
            +YN +I    + GR  E +DLL  M    +   D + ++     C   +  KEA    +
Sbjct: 253 RTYNPVIDACAKGGRWLEAMDLLGQMLTNDI-PADVISYSSVIAACGRGRRWKEAMDLLE 311

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +     +P + ++N  +  CA     + A  +LR +   GL      Y +    CA +G
Sbjct: 312 QMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNG 371

Query: 142 K-VDAM-------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           + V+A+        + + P+ + +N+ + AC + G  ++A  +L  M+      DPD I+
Sbjct: 372 RWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMS--TVGSDPDIIS 429

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDD 251
             + + AC    Q + A E+ + +    +  TP V  Y  AI  C ++  W+ A  ++ +
Sbjct: 430 FNSAIDACGRGQQWETAVELLREMPTAGL--TPNVITYNSAIEACGRSARWQEAMGLFRE 487

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M  +G+ P+ V  +++ID      + E A ++L     +G++  +ISY+S + AC   + 
Sbjct: 488 MPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKGEQ 547

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           W+ AL+L + M +   KP + + N+ +TA     +  + + +L DM ++GL PNT++Y  
Sbjct: 548 WELALQLLKGMPTRGPKPDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPNTVSYGA 607

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
            + AC + +  +V + +L + +  G  PNL+ +   I  C++  R+++A
Sbjct: 608 AIHACGKGEQWDVAVRILKEMQTHGATPNLITYSAAIDACAKQGRWKEA 656



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 188/393 (47%), Gaps = 32/393 (8%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-------- 144
           +++N+ ++ C++ +    A ++LR +   G+  D   Y + I  C+K G+          
Sbjct: 111 TSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQ 170

Query: 145 --AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
             A  E + PD V +N+ I AC   G    A D+L +M A+  P  P+ IT  + + ACA
Sbjct: 171 MVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVP--PNLITYNSAIGACA 228

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              + + A ++ + + +     +   Y   I+ C++ G W  A  +   M    +  D +
Sbjct: 229 KGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIPADVI 288

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             S++I   G   + + A ++L++ + QG+S  +ISY+S + AC+    W++AL+L   M
Sbjct: 289 SYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREM 348

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            ++ L PTV + N+   A     +  + +E+L +M + G+ PNTI+Y+  L AC +    
Sbjct: 349 TTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQW 408

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA---------RTLNEHVLSFNS- 430
           E  + LL      G  P+++ F   I  C R  ++E A           L  +V+++NS 
Sbjct: 409 EKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVITYNSA 468

Query: 431 ----GRPQIENKWTSLALMVYREAIVAGTIPTV 459
               GR     +W   A+ ++RE    G  P V
Sbjct: 469 IEACGR---SARWQE-AMGLFREMPTRGLSPNV 497



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 177/384 (46%), Gaps = 34/384 (8%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--------ENVKPDR 154
           A  +D   A   L   + +G   D   Y   I  C+   +             E V PD 
Sbjct: 86  AKGRDWRTALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDV 145

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           V +N+ I AC + G    A D+L +M A    + PD +T  + + AC+N G   R +E  
Sbjct: 146 VTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAACSNGG---RWKEAM 202

Query: 215 KMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            ++ +   +G P     Y  AI  C++   WE A  + +++ ++G  P     + +ID  
Sbjct: 203 DLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDAC 262

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G+   A ++L +     I   +ISYSS++ AC   + W++A++L E M++  + P V
Sbjct: 263 AKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNV 322

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            + N+ I A   GD+  + +++L +M ++GL P  I+Y+    AC         L LL +
Sbjct: 323 ISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLKE 382

Query: 392 AKEDGVIPNLVMFKCIIGMCSR--RYEKARTL---------NEHVLSFNS-----GRPQI 435
               G+ PN + +   +  C++  ++EKA  L         +  ++SFNS     GR Q 
Sbjct: 383 MPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQ- 441

Query: 436 ENKWTSLALMVYREAIVAGTIPTV 459
             +W + A+ + RE   AG  P V
Sbjct: 442 --QWET-AVELLREMPTAGLTPNV 462



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 196/410 (47%), Gaps = 25/410 (6%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           +D+   + SY+ +I    R  R  E +DLLE M  +G+   + + +    + C      K
Sbjct: 281 NDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGV-SPNVISYNSAIDACAKGDRWK 339

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA    + +      PT+ ++N   + CA +     A ++L+ +   G+  +   Y + +
Sbjct: 340 EALDLLREMTTVGLVPTVISYNSATAACAVNGRWVEALELLKEMPAQGIAPNTISYNSAL 399

Query: 135 TTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
             CAK G+ +   + ++        PD + FN+ I ACG+    + A ++L EM      
Sbjct: 400 DACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDACGRGQQWETAVELLREM--PTAG 457

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWE 243
           + P+ IT  + ++AC   G+  R +E   +  +   +G +P V  Y   I+ C++   WE
Sbjct: 458 LTPNVITYNSAIEAC---GRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWE 514

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  +   M  +GV PD +  ++ I+  G   + E A ++L+    +G    IISY+S +
Sbjct: 515 LAVQLLTGMPARGVAPDVISYNSAIEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAV 574

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
            AC+ +  W++AL L + M ++ L P   +  A I A   G+Q    + +L +M++ G  
Sbjct: 575 TACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGAT 634

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           PN ITYS  + AC ++   +  + LL+  +  G+ P+   +  +I    R
Sbjct: 635 PNLITYSAAIDACAKQGRWKEAVDLLTDLRRQGLTPDAQTYLTVISAFQR 684


>gi|428179078|gb|EKX47950.1| hypothetical protein GUITHDRAFT_136922 [Guillardia theta CCMP2712]
          Length = 714

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 192/374 (51%), Gaps = 32/374 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN LI    R    S+     +DM+ +G+   + V ++     C+S+     AF  F  
Sbjct: 343 TYNSLIFACLRANNFSQAFAFFDDMQAQGI-SPNVVTYSTMIASCRSKDNWVTAFDLFLE 401

Query: 85  ----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
               ++ P+P   TF+ L+SVC  SK  E A  VL  +Q+AG++ + ++Y+ ++  C ++
Sbjct: 402 MIRKEIPPDPM--TFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRMYSAVVHVCGQA 459

Query: 141 GKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G++D  F        + +KP+ ++F ALI AC  +  +DRAF VL E+  E H V P+ +
Sbjct: 460 GRLDDAFRILDECKRDGIKPNVIMFTALIHACKVARDLDRAFRVL-ELMKEDH-VTPNLV 517

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+  C   G    A +V  ++ +Y  +   + +   I  C ++ +W+ A  VY  M
Sbjct: 518 TFNVLLGTCEVVGNSTCAFQVVGLLQEYGFRANLQTFNTLIKTCVRSHEWQKAFEVYSQM 577

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ---------GISVGIISYSSLM 303
             + + P     +AL   A   G    A +++ + + +         G +  + +Y+SL+
Sbjct: 578 QLQRIRPSLSTFNALSMAAEEGGDWRRAIDVMVDMRIKTEKILIRMAGHTPSVQAYNSLI 637

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
            AC  + N+QKA ++Y+ MK+  ++  + T N +I+ L    +L + ++V+++MK   + 
Sbjct: 638 SACVKSSNYQKAFDVYKGMKTSGVRANIVTYNLIISILSGQRKLSEVLKVINEMKQEEVT 697

Query: 364 PNTITYSILLVACE 377
           P++ T ++++ A +
Sbjct: 698 PDSETIALMIDAVQ 711



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 184/399 (46%), Gaps = 25/399 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L R G   E + +L  ME+ G+ + D V +    +  +    I+  F   K +    +P 
Sbjct: 96  LERMGDWREAVAILNIMEKDGV-EPDIVSYNTVLSALRHSPDIQNVFVMLKRMREKVSPD 154

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF---- 147
           + +FN  ++ C    D E    +L ++ E  ++ D   ++TLI+ C + GK D  F    
Sbjct: 155 IVSFNTALAACQRQCDWESGVAILEMMSEDQIERDVFTFSTLISLCDRCGKYDEAFALKE 214

Query: 148 ----ENVKPDRVVFNALITACGQSGAVDR-----------AFDVLAEMNAEVHPVDPDHI 192
               +NV P+   FNALI  C  S A              A  + AE  A+   + PD +
Sbjct: 215 EMDAKNVSPNIYTFNALIAVCKNSLATSLMSRKRQNTLTIAQILFAE--AKAAGLRPDIV 272

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T  +L+      G+   + ++   I   ++      Y+  I+  ++T  +  A  +Y+ M
Sbjct: 273 TYNSLLGVYMEMGKWKESYDILFEIEDQHVITDVITYSTLISTFAKTRKYSLAIEMYEKM 332

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            ++ V+P+ +  ++LI     A     AF    + + QGIS  +++YS+++ +C +  NW
Sbjct: 333 MERQVMPNVITYNSLIFACLRANNFSQAFAFFDDMQAQGISPNVVTYSTMIASCRSKDNW 392

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
             A +L+  M   ++ P   T +AL++      Q  + M+VL  M+  G+  N   YS +
Sbjct: 393 VTAFDLFLEMIRKEIPPDPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRMYSAV 452

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           +  C +   ++    +L + K DG+ PN++MF  +I  C
Sbjct: 453 VHVCGQAGRLDDAFRILDECKRDGIKPNVIMFTALIHAC 491



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 102/427 (23%), Positives = 190/427 (44%), Gaps = 30/427 (7%)

Query: 10  QFPYPNGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA 65
           Q  +   K A    D+     +YN L+      G+  E  D+L ++E + ++     Y  
Sbjct: 256 QILFAEAKAAGLRPDIV----TYNSLLGVYMEMGKWKESYDILFEIEDQHVITDVITYST 311

Query: 66  RFFNVCKSQK---AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
                 K++K   AI+   +  +    P + T+N L+  C  + +   AF     +Q  G
Sbjct: 312 LISTFAKTRKYSLAIEMYEKMMERQVMPNVITYNSLIFACLRANNFSQAFAFFDDMQAQG 371

Query: 123 LKADCKLYTTLITTC-AKSGKVDA-------MFENVKPDRVVFNALITACGQSGAVDRAF 174
           +  +   Y+T+I +C +K   V A       + + + PD + F+AL++ C  S   ++A 
Sbjct: 372 ISPNVVTYSTMIASCRSKDNWVTAFDLFLEMIRKEIPPDPMTFSALLSVCQHSKQWEQAM 431

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
           DVL  M      +  +     A++  C  AG++D A  +     +  IK    ++T  I+
Sbjct: 432 DVLEWMQDA--GIQLNIRMYSAVVHVCGQAGRLDDAFRILDECKRDGIKPNVIMFTALIH 489

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
            C    D + A  V + M +  V P+ V  + L+      G    AF+++   +  G   
Sbjct: 490 ACKVARDLDRAFRVLELMKEDHVTPNLVTFNVLLGTCEVVGNSTCAFQVVGLLQEYGFRA 549

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
            + ++++L+  C  +  WQKA E+Y  M+  +++P++ST NAL  A  +G    + ++V+
Sbjct: 550 NLQTFNTLIKTCVRSHEWQKAFEVYSQMQLQRIRPSLSTFNALSMAAEEGGDWRRAIDVM 609

Query: 355 SDMK---------SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
            DM+           G  P+   Y+ L+ AC +  + +    +    K  GV  N+V + 
Sbjct: 610 VDMRIKTEKILIRMAGHTPSVQAYNSLISACVKSSNYQKAFDVYKGMKTSGVRANIVTYN 669

Query: 406 CIIGMCS 412
            II + S
Sbjct: 670 LIISILS 676



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 156/347 (44%), Gaps = 21/347 (6%)

Query: 89  NPTLSTFNMLMSVCASS-------KDSEGAFQVLRLV----QEAGLKADCKLYTTLITTC 137
           +P + TFN L++VC +S       +  +    + +++    + AGL+ D   Y +L+   
Sbjct: 222 SPNIYTFNALIAVCKNSLATSLMSRKRQNTLTIAQILFAEAKAAGLRPDIVTYNSLLGVY 281

Query: 138 AKSGK----VDAMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            + GK     D +FE    +V  D + ++ LI+   ++     A ++  +M      V P
Sbjct: 282 MEMGKWKESYDILFEIEDQHVITDVITYSTLISTFAKTRKYSLAIEMYEKMME--RQVMP 339

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           + IT  +L+ AC  A    +A   +  +    I      Y+  I  C    +W  A  ++
Sbjct: 340 NVITYNSLIFACLRANNFSQAFAFFDDMQAQGISPNVVTYSTMIASCRSKDNWVTAFDLF 399

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
            +M +K + PD +  SAL+    H+ + E A ++L+  ++ GI + I  YS+++  C  A
Sbjct: 400 LEMIRKEIPPDPMTFSALLSVCQHSKQWEQAMDVLEWMQDAGIQLNIRMYSAVVHVCGQA 459

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
                A  + +  K   +KP V    ALI A      L +   VL  MK   + PN +T+
Sbjct: 460 GRLDDAFRILDECKRDGIKPNVIMFTALIHACKVARDLDRAFRVLELMKEDHVTPNLVTF 519

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
           ++LL  CE   +      ++   +E G   NL  F  +I  C R +E
Sbjct: 520 NVLLGTCEVVGNSTCAFQVVGLLQEYGFRANLQTFNTLIKTCVRSHE 566



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 158/346 (45%), Gaps = 26/346 (7%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF------- 147
           FN  +       D   A  +L ++++ G++ D   Y T+++    S  +  +F       
Sbjct: 89  FNACIRALERMGDWREAVAILNIMEKDGVEPDIVSYNTVLSALRHSPDIQNVFVMLKRMR 148

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           E V PD V FN  + AC +    +    +L  M+ +   ++ D  T   L+  C   G+ 
Sbjct: 149 EKVSPDIVSFNTALAACQRQCDWESGVAILEMMSED--QIERDVFTFSTLISLCDRCGKY 206

Query: 208 DRAREVYKMIHKYNIKGTPEVYTI--AINCCSQT-----------GDWEFACSVYDDMTK 254
           D A  + + +   N+  +P +YT    I  C  +                A  ++ +   
Sbjct: 207 DEAFALKEEMDAKNV--SPNIYTFNALIAVCKNSLATSLMSRKRQNTLTIAQILFAEAKA 264

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G+ PD V  ++L+      GK + +++IL E ++Q +   +I+YS+L+   +  + +  
Sbjct: 265 AGLRPDIVTYNSLLGVYMEMGKWKESYDILFEIEDQHVITDVITYSTLISTFAKTRKYSL 324

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A+E+YE M   ++ P V T N+LI A    +   +      DM++ G+ PN +TYS ++ 
Sbjct: 325 AIEMYEKMMERQVMPNVITYNSLIFACLRANNFSQAFAFFDDMQAQGISPNVVTYSTMIA 384

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKA 418
           +C  KD+      L  +     + P+ + F  ++ +C  S+++E+A
Sbjct: 385 SCRSKDNWVTAFDLFLEMIRKEIPPDPMTFSALLSVCQHSKQWEQA 430


>gi|308804848|ref|XP_003079736.1| putative crp1 protein (ISS) [Ostreococcus tauri]
 gi|116058193|emb|CAL53382.1| putative crp1 protein (ISS) [Ostreococcus tauri]
          Length = 900

 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 178/767 (23%), Positives = 303/767 (39%), Gaps = 171/767 (22%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFF 84
           SE  H+Y  L+R  R+ + +DLL  M   G+ ++  +V H  FF  C+S K +   F F 
Sbjct: 38  SEYFHTYRALVRCRRLHDAVDLLRHMRGAGVRNLGARVSHRDFFRACRSLKVVSVGFEFL 97

Query: 85  KLVPN-----------------------------------PTLSTFNMLMSVCASSKDSE 109
           +++ +                                   P L  +  L+S C+   D E
Sbjct: 98  EVIESTDIRPYNMLVHACAQAGDIKAALLASKTMWNAGFRPDLHAYTTLISACSKGGDVE 157

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLI--------TTCAKSGK-----------VDAMFE-- 148
            AF+V   +++ GL+ + + Y +LI         T A S K           +D  FE  
Sbjct: 158 RAFEVFEEMKKTGLEPNAQTYASLIDAIKREISVTVAGSKKRRIDDDSVRASLDRCFEVY 217

Query: 149 ------NVKPDRVVFNALITACGQSGAV--------DRAFDVLAEMNAEVHPVDPDHITI 194
                 +VK D  + N+L+ AC +  A         +RA  V A++ A+   +  D    
Sbjct: 218 EDMKKNSVKADIAMMNSLLNACSRVAAAPNLRKISCERAEAVRADIVAQ--GLKLDSYAY 275

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +L+     +    +A E+Y  +    +  T EVYT+ I      G+ +    +++ M +
Sbjct: 276 ASLICCAVASENYIKAFELYDDMLDSGVSATAEVYTVMIRAYGILGEVQKTKDLWEKMLE 335

Query: 255 KGVIPDEVFLSALI---------DFA-----------------------------GHAGK 276
            GV PD++  + ++         DFA                             G A K
Sbjct: 336 SGVKPDQMAYATMMRIALLDNDEDFADDLMASMRMNRVRPGAELYVILTGVAARQGDATK 395

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNA--------------------------- 309
           +E   EIL  AK +GI+  I  Y+SL+ A + A                           
Sbjct: 396 IE---EILLTAKKRGITPPIECYNSLVAAHARADRPDLAIKAVEKLEKAGFEPDAITYEG 452

Query: 310 --------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
                   +++++A  ++E +    ++PT  TMN L+          +   ++  M   G
Sbjct: 453 LIFAHAWSRDYEEAKRIFERLVETGMRPTFPTMNCLVACEARRGHFDEVQSIIDMMHEYG 512

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
              + +T   LLV   R  D+E    +  +++  G + +      I+G           L
Sbjct: 513 YEDDEMTLRELLVGYARAGDIESAWRVYKESRAVGKVNSERALNTILGQTLVHIRSLTKL 572

Query: 422 NE------HVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA 475
           N        + S++ G   +  +W   A+  + EA VAG +P VE  S +L CL+ P   
Sbjct: 573 NRGSQSRAELGSYDEGGNYVAQEWAERAVSAFHEATVAGIVPRVETFSTMLACLRPP--- 629

Query: 476 DIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVV 535
              E+   +    A A+    + S  D    Y  +A  + EEA S GIV   S  E   V
Sbjct: 630 STNEQNASDYSEVARAVSH-EMSSHEDAARYYPSQALIMYEEAQSLGIVAPFSRTE-DFV 687

Query: 536 VDARKLEIHTAKVYLLTILKGLRHRLAAGA---KLPNVNILLPVEKTQIMSVGGEKTIDI 592
            D R+     A+V LLT L+ +R    A     ++P + I +  + T+++ +  E+ ++ 
Sbjct: 688 YDIREFPPAAAEVMLLTWLRVVRRLTDANGIDTEIPTLTIRVR-DDTEVLRMLKEEHVEK 746

Query: 593 AER-------TTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQ 632
            +R       T + +  LLRRL   Y G    G I ++G A+ RW +
Sbjct: 747 NDRALARLCQTGERVLVLLRRLRFNYGGGLEQGSIELSGNAVSRWLR 793


>gi|298707411|emb|CBJ30040.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 564

 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 160/336 (47%), Gaps = 18/336 (5%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEN- 149
           T+++LMS  A S   E    +L +++  G+  D   +   +  CAK G+ +   A+ +  
Sbjct: 71  TYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWERAVALLDQR 130

Query: 150 ------------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
                       + P+   F++ + ACG +G  +RA  +L +M  E  P  P+  T  A 
Sbjct: 131 ALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVP--PNEFTFSAA 188

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           + AC  AGQ   A  + + +   N     + YT AI+ C + G+W  A  +  +M +KGV
Sbjct: 189 VSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKGV 248

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P+ +  ++ I   G+ G+ + A  +L++  + G+   + SY++ + AC +   W +AL 
Sbjct: 249 APNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARALA 308

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           ++E M+S  ++    +  A I A   G      + +L +M+  G+ P   ++S  + AC 
Sbjct: 309 VHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAISACG 368

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +       + LL + +E GV PN V F   I  C R
Sbjct: 369 KGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGR 404



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 193/431 (44%), Gaps = 39/431 (9%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------------ 72
           +++Y+ L+    R GR  E + LL+ M  +G+   D        N C             
Sbjct: 69  VYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAP-DHFAFGAAVNACAKGGQWERAVALL 127

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            Q+A++       +  +P ++TF+  ++ C ++   E A  +L  + E G+  +   ++ 
Sbjct: 128 DQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSA 187

Query: 133 LITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
            ++ C K+G+              N  P+   + A I ACG++G    A  +LAEM  + 
Sbjct: 188 AVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREK- 246

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             V P+ IT  + + A  N GQ   A  + + +    ++     YT A+  C     W  
Sbjct: 247 -GVAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWAR 305

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A +V++ M  +G+  DEV  +A ID     G  E A  +L E +++GI   + S+S+ + 
Sbjct: 306 ALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAIS 365

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
           AC   + W +A+ L   M+ + + P   + NA I A     Q    + +L  M S G+  
Sbjct: 366 ACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSSAGVPR 425

Query: 365 NTITYSILLVACERKDDVEVGL-----MLLSQAKEDG-----VIPNLVMFKCIIGMCSR- 413
            TITY+ ++ AC +  +    +     ML  QAK DG      + ++V +   I  C R 
Sbjct: 426 GTITYNAVIAACGKGKEWARAVSVLREMLAGQAKTDGDMAPVPMADVVSYSAAIDACVRA 485

Query: 414 -RYEKARTLNE 423
             +E+A +L E
Sbjct: 486 GEWEEAISLVE 496



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 156/327 (47%), Gaps = 18/327 (5%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALIT 162
           A     L +E G+  D   Y+ L++  A+SG+ + +         E V PD   F A + 
Sbjct: 53  ALTAANLAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVN 112

Query: 163 ACGQSGAVDRA--------FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           AC + G  +RA          +L EM A    + P+  T  + + AC NAGQ +RA  + 
Sbjct: 113 ACAKGGQWERAVALLDQRALRLLGEMAA--VGLSPNVTTFSSAVAACGNAGQWERALGLL 170

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             + +  +      ++ A++ C + G W  A ++   M      P+    +A ID  G A
Sbjct: 171 DQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKA 230

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G+   A  +L E + +G++  +I+++S + A  N   WQ+AL L   M S+ ++P + + 
Sbjct: 231 GEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSY 290

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            A +TA  D ++  + + V   M+S G+  + ++++  + AC +    E+ L LL + ++
Sbjct: 291 TAAVTACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRD 350

Query: 395 DGVIPNLVMFKCIIGMCSRRYEKARTL 421
           +G+ P +  F   I  C +  +  R +
Sbjct: 351 EGIPPTVRSFSTAISACGKGQQWGRAV 377



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 148/357 (41%), Gaps = 24/357 (6%)

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D  T   LM A A +G+ +    +  ++    +      +  A+N C++ G WE A ++ 
Sbjct: 68  DVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHFAFGAAVNACAKGGQWERAVALL 127

Query: 250 D--------DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
           D        +M   G+ P+    S+ +   G+AG+ E A  +L +   +G+     ++S+
Sbjct: 128 DQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWERALGLLDQMAEEGVPPNEFTFSA 187

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
            + AC  A  W+ AL +   M++    P V T  A I A     +      +L++M+  G
Sbjct: 188 AVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREKG 247

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
           + PN IT++  + A       +  L LL      GV PN+  +   +  C      AR L
Sbjct: 248 VAPNVITFNSAISALGNGGQWQEALNLLRDMPSMGVQPNMWSYTAAVTACGDNNRWARAL 307

Query: 422 NEHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSKVL--- 466
             H    + G    E  +T+            +AL +  E    G  PTV   S  +   
Sbjct: 308 AVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSFSTAISAC 367

Query: 467 GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGI 523
           G  Q    A    R +E +GVS + +  +         G++   A SLL++ +S G+
Sbjct: 368 GKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRA-ALSLLDKMSSAGV 423



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 127/325 (39%), Gaps = 91/325 (28%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---- 142
           VP P   TF+  +S C  +     A  +LR ++ A    + + YT  I  C K+G+    
Sbjct: 178 VP-PNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLA 236

Query: 143 ----VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                +   + V P+ + FN+ I+A G  G    A ++L +M +    V P+  +  A +
Sbjct: 237 QGLLAEMREKGVAPNVITFNSAISALGNGGQWQEALNLLRDMPS--MGVQPNMWSYTAAV 294

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-- 256
            AC +  +  RA  V++ +    I+G    +T AI+ C+Q G WE A ++ D+M  +G  
Sbjct: 295 TACGDNNRWARALAVHEQMRSRGIRGDEVSFTAAIDACAQGGAWEMALALLDEMRDEGIP 354

Query: 257 ---------------------------------VIPDEVFLSALIDFAGHAGKVEAAFEI 283
                                            V P+EV  +A ID  G AG+  AA  +
Sbjct: 355 PTVRSFSTAISACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSL 414

Query: 284 LQEAKNQGISVG---------------------------------------------IIS 298
           L +  + G+  G                                             ++S
Sbjct: 415 LDKMSSAGVPRGTITYNAVIAACGKGKEWARAVSVLREMLAGQAKTDGDMAPVPMADVVS 474

Query: 299 YSSLMGACSNAKNWQKALELYEHMK 323
           YS+ + AC  A  W++A+ L E ++
Sbjct: 475 YSAAIDACVRAGEWEEAISLVELLR 499



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/319 (21%), Positives = 131/319 (41%), Gaps = 36/319 (11%)

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           + G W+ A +  +   + GV+ D    S L+     +G+ E    +L   +++G++    
Sbjct: 46  RKGQWKEALTAANLAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDHF 105

Query: 298 SYSSLMGACSNAKNW--------QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           ++ + + AC+    W        Q+AL L   M ++ L P V+T ++ + A  +  Q  +
Sbjct: 106 AFGAAVNACAKGGQWERAVALLDQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWER 165

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            + +L  M   G+ PN  T+S  + AC +       L +L + +     PN+  +   I 
Sbjct: 166 ALGLLDQMAEEGVPPNEFTFSAAVSACGKAGQWRPALTILRRMRAANCPPNVQTYTAAID 225

Query: 410 MCSRRYE-----------KARTLNEHVLSFNSGRPQIEN--KWTSLALMVYREAIVAGTI 456
            C +  E           + + +  +V++FNS    + N  +W   AL + R+    G  
Sbjct: 226 ACGKAGEWRLAQGLLAEMREKGVAPNVITFNSAISALGNGGQWQE-ALNLLRDMPSMGVQ 284

Query: 457 PTV-EVVSKVLGC-------LQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD 508
           P +    + V  C         L  +  +R R     G+  D +  +         G ++
Sbjct: 285 PNMWSYTAAVTACGDNNRWARALAVHEQMRSR-----GIRGDEVSFTAAIDACAQGGAWE 339

Query: 509 PRAFSLLEEAASFGIVPCV 527
             A +LL+E    GI P V
Sbjct: 340 -MALALLDEMRDEGIPPTV 357



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 109/270 (40%), Gaps = 45/270 (16%)

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
           G  G+ + A      A+  G+   + +YS LM A + +  W++ L L + M+S  + P  
Sbjct: 45  GRKGQWKEALTAANLAREDGVVFDVYTYSVLMSAVARSGRWEEVLVLLDVMRSEGVAPDH 104

Query: 332 STMNALITALCDGDQLP--------KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
               A + A   G Q          + + +L +M ++GL PN  T+S  + AC      E
Sbjct: 105 FAFGAAVNACAKGGQWERAVALLDQRALRLLGEMAAVGLSPNVTTFSSAVAACGNAGQWE 164

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLA 443
             L LL Q  E+GV PN   F   +  C +                  RP         A
Sbjct: 165 RALGLLDQMAEEGVPPNEFTFSAAVSACGK--------------AGQWRP---------A 201

Query: 444 LMVYREAIVAGTIPTVEVVSKVL------GCLQLPYN--ADIRERLVENLGVSADALKRS 495
           L + R    A   P V+  +  +      G  +L     A++RE+     GV+ + +  +
Sbjct: 202 LTILRRMRAANCPPNVQTYTAAIDACGKAGEWRLAQGLLAEMREK-----GVAPNVITFN 256

Query: 496 NLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
           +  S +   G++   A +LL +  S G+ P
Sbjct: 257 SAISALGNGGQWQ-EALNLLRDMPSMGVQP 285



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 21/200 (10%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTF 95
           R +  + + E M  +G+   D+V      + C    A + A      + +    PT+ +F
Sbjct: 302 RWARALAVHEQMRSRGIRG-DEVSFTAAIDACAQGGAWEMALALLDEMRDEGIPPTVRSF 360

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           +  +S C   +    A  +LR ++E G+  +   +   I  C ++G+  A          
Sbjct: 361 STAISACGKGQQWGRAVALLREMEEVGVSPNEVSFNAAIDACGRAGQWRAALSLLDKMSS 420

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEM-------NAEVHPVD-PDHITIGALMK 199
             V    + +NA+I ACG+     RA  VL EM       + ++ PV   D ++  A + 
Sbjct: 421 AGVPRGTITYNAVIAACGKGKEWARAVSVLREMLAGQAKTDGDMAPVPMADVVSYSAAID 480

Query: 200 ACANAGQVDRAREVYKMIHK 219
           AC  AG+ + A  + +++ +
Sbjct: 481 ACVRAGEWEEAISLVELLRR 500


>gi|298705285|emb|CBJ48975.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 674

 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 118/496 (23%), Positives = 214/496 (43%), Gaps = 75/496 (15%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLR 116
           V +      C + K  K A   F+ +       P + T+  L+S CA   + E +   L 
Sbjct: 110 VSYNNVITACANAKKQKRAEGIFREMTKERGIRPNVFTYGALISACAKRGNWEDSVNYLE 169

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSG 168
            ++++GL  +  +Y+T+I+ C +S +             + + P  V +N +I+ACG+SG
Sbjct: 170 QMRQSGLAPNAVIYSTVISACERSDQWQKAVKLLRTMRRDGILPVTVTYNTVISACGKSG 229

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
               A  +L EM+    P  P  +T  + M AC  A Q      +   + +  +      
Sbjct: 230 QWSLAVSLLDEMSDMGCP--PGPVTFASAMLACERARQWHHVLRIMDQMQEDEVWVDKYA 287

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           YT AI+   Q G W       D+M   GV  D V +S  I      G+   A ++L++  
Sbjct: 288 YTTAIHAAGQLGKWARCVRYLDEMDSNGVAKDVVTVSVAISACADKGQWAQAEKLLEDML 347

Query: 289 NQGISVGIISYSSLM-----------------------------------GACSNAKNWQ 313
           + G++  +I+Y+SLM                                    AC++AK W+
Sbjct: 348 DDGLTPNVITYTSLMVVLRRGGQHERAIKILDLMRSKGVMPNVRTYSVAIAACADAKEWR 407

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +AL L + M+   + P   + N  I A  D  QL + ++++ +M+S G+  + +TY   +
Sbjct: 408 RALALLKEMEREGVSPNEISYNTAIRACGDAGQLSEALDLMDEMESRGVKASVVTYGTAV 467

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC------SRRYEKARTLNEHVLS 427
            AC+R  D ++ L LL+  + + + PN +++  II  C      S+    A  + E +  
Sbjct: 468 AACQRAADWKMALELLAAMRREQIEPNEIVYGGIIKACCAAGQASKALVDADQIEEAIQL 527

Query: 428 FN-------------SGRPQI-----ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
           FN             S  P +     E +W   A+M+++E      +PTV+  + V+   
Sbjct: 528 FNKLQARRNCSVTIHSYTPLVDALTRELRWQE-AIMLFQEMEDRKIMPTVQCYTSVVRAC 586

Query: 470 QLPYNADIRERLVENL 485
           +     D+  RL++++
Sbjct: 587 ERSGQYDVALRLLDDM 602



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 133/307 (43%), Gaps = 36/307 (11%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V+P+ V +N +ITAC  +    RA  +  EM  E   + P+  T GAL+ ACA  G  + 
Sbjct: 105 VEPNVVSYNNVITACANAKKQKRAEGIFREMTKE-RGIRPNVFTYGALISACAKRGNWED 163

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           +    + + +  +     +Y+  I+ C ++  W+ A  +   M + G++P  V  + +I 
Sbjct: 164 SVNYLEQMRQSGLAPNAVIYSTVISACERSDQWQKAVKLLRTMRRDGILPVTVTYNTVIS 223

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK------ 323
             G +G+   A  +L E  + G   G ++++S M AC  A+ W   L + + M+      
Sbjct: 224 ACGKSGQWSLAVSLLDEMSDMGCPPGPVTFASAMLACERARQWHHVLRIMDQMQEDEVWV 283

Query: 324 -----------------------------SIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
                                        S  +   V T++  I+A  D  Q  +  ++L
Sbjct: 284 DKYAYTTAIHAAGQLGKWARCVRYLDEMDSNGVAKDVVTVSVAISACADKGQWAQAEKLL 343

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
            DM   GL PN ITY+ L+V   R    E  + +L   +  GV+PN+  +   I  C+  
Sbjct: 344 EDMLDDGLTPNVITYTSLMVVLRRGGQHERAIKILDLMRSKGVMPNVRTYSVAIAACADA 403

Query: 415 YEKARTL 421
            E  R L
Sbjct: 404 KEWRRAL 410



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 130/286 (45%), Gaps = 25/286 (8%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAM 146
           T ++ +S CA       A ++L  + + GL  +   YT+L+    + G+       +D M
Sbjct: 322 TVSVAISACADKGQWAQAEKLLEDMLDDGLTPNVITYTSLMVVLRRGGQHERAIKILDLM 381

Query: 147 -FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             + V P+   ++  I AC  +    RA  +L EM  E   V P+ I+    ++AC +AG
Sbjct: 382 RSKGVMPNVRTYSVAIAACADAKEWRRALALLKEMERE--GVSPNEISYNTAIRACGDAG 439

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           Q+  A ++   +    +K +   Y  A+  C +  DW+ A  +   M ++ + P+E+   
Sbjct: 440 QLSEALDLMDEMESRGVKASVVTYGTAVAACQRAADWKMALELLAAMRREQIEPNEIVYG 499

Query: 266 ALIDFAGHAGKVEAA-------------FEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            +I     AG+   A             F  LQ  +N   SV I SY+ L+ A +    W
Sbjct: 500 GIIKACCAAGQASKALVDADQIEEAIQLFNKLQARRN--CSVTIHSYTPLVDALTRELRW 557

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Q+A+ L++ M+  K+ PTV    +++ A     Q    + +L DM+
Sbjct: 558 QEAIMLFQEMEDRKIMPTVQCYTSVVRACERSGQYDVALRLLDDMR 603



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 116/273 (42%), Gaps = 38/273 (13%)

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDW 242
           V  V+P+ ++   ++ ACANA +  RA  +++ M  +  I+     Y   I+ C++ G+W
Sbjct: 102 VPAVEPNVVSYNNVITACANAKKQKRAEGIFREMTKERGIRPNVFTYGALISACAKRGNW 161

Query: 243 E-------------------------FACSVYDD----------MTKKGVIPDEVFLSAL 267
           E                          AC   D           M + G++P  V  + +
Sbjct: 162 EDSVNYLEQMRQSGLAPNAVIYSTVISACERSDQWQKAVKLLRTMRRDGILPVTVTYNTV 221

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I   G +G+   A  +L E  + G   G ++++S M AC  A+ W   L + + M+  ++
Sbjct: 222 ISACGKSGQWSLAVSLLDEMSDMGCPPGPVTFASAMLACERARQWHHVLRIMDQMQEDEV 281

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
                     I A     +  + +  L +M S G+  + +T S+ + AC  K        
Sbjct: 282 WVDKYAYTTAIHAAGQLGKWARCVRYLDEMDSNGVAKDVVTVSVAISACADKGQWAQAEK 341

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
           LL    +DG+ PN++ +  ++ +  R  ++E+A
Sbjct: 342 LLEDMLDDGLTPNVITYTSLMVVLRRGGQHERA 374



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 117/290 (40%), Gaps = 67/290 (23%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLS 93
           +G+ ++   LLEDM   GL   + + +     V +     + A +   L+ +    P + 
Sbjct: 333 KGQWAQAEKLLEDMLDDGLTP-NVITYTSLMVVLRRGGQHERAIKILDLMRSKGVMPNVR 391

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFE- 148
           T+++ ++ CA +K+   A  +L+ ++  G+  +   Y T I  C  +G++    D M E 
Sbjct: 392 TYSVAIAACADAKEWRRALALLKEMEREGVSPNEISYNTAIRACGDAGQLSEALDLMDEM 451

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               VK   V +   + AC ++     A ++LA M  E   ++P+ I  G ++KAC  AG
Sbjct: 452 ESRGVKASVVTYGTAVAACQRAADWKMALELLAAMRRE--QIEPNEIVYGGIIKACCAAG 509

Query: 206 QVDRA--------------------REVYKMIHKYN------------------------ 221
           Q  +A                    R     IH Y                         
Sbjct: 510 QASKALVDADQIEEAIQLFNKLQARRNCSVTIHSYTPLVDALTRELRWQEAIMLFQEMED 569

Query: 222 --IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV------IPDEVF 263
             I  T + YT  +  C ++G ++ A  + DDM KK +      I DE+F
Sbjct: 570 RKIMPTVQCYTSVVRACERSGQYDVALRLLDDMRKKRMRFYDIGILDELF 619


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/391 (28%), Positives = 181/391 (46%), Gaps = 17/391 (4%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN---VCKSQKAIKEAF 81
           + +YN LI    + GR+SE   L  +M  +G +     Y++  +    V +SQKA++   
Sbjct: 114 VRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLE 173

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              +    P + T++ L++      ++  AF++ + ++  G K D   +T L+    K+G
Sbjct: 174 EMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAG 233

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +VD   E         VKP  V +NALI   G+ G +  A+++L EM    +   PD +T
Sbjct: 234 RVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKR--NGCKPDVVT 291

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+     A Q+D A +V K + K         Y   IN   + G    A  ++D M 
Sbjct: 292 YSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMK 351

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            KG  PD V  S LI   G A +VE+A  + +E ++ GI   + +Y S++     A    
Sbjct: 352 SKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVD 411

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A  L+  M+   L P V T NA + +L  G +  +  ++  DMK  GL P+  TY  LL
Sbjct: 412 DADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALL 471

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           +   +  +V+    LL +  E G   + + F
Sbjct: 472 LGLSKTKEVDDACGLLKELIEQGCAFDSLKF 502



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 131/537 (24%), Positives = 229/537 (42%), Gaps = 48/537 (8%)

Query: 10  QFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN 69
           Q  +   K A +  DV       N L R G+    ++++ +M+ KG       Y+     
Sbjct: 29  QLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDC 88

Query: 70  VCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           + K+ +   EA R    + +    P + T+N L+S    +     AF +   ++E G   
Sbjct: 89  LGKAGQ-FDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVP 147

Query: 126 DCKLYTTLITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVL 177
           D   Y +LI    K G+     E ++        PD + +++LIT  G+ G   +AF + 
Sbjct: 148 DTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLF 207

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            EM        PD IT  ALM A   AG+VD A E+   + +  +K     Y   I    
Sbjct: 208 QEMKRRGRK--PDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFG 265

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           + GD   A ++ D+M + G  PD V  S LI     A +++ A ++L++ + +G     I
Sbjct: 266 KVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTI 325

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +Y++L+     A     A  L++ MKS    P V T + LITAL    ++     +  +M
Sbjct: 326 TYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEM 385

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RY 415
           +S+G+ P+  TY  ++    +   V+    L S+ +  G+ P+++ +   +    R  R+
Sbjct: 386 ESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRF 445

Query: 416 EKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA 475
           ++AR                          ++ +   +G +P V     +L  L      
Sbjct: 446 KEARK-------------------------IFEDMKESGLLPDVATYDALLLGLSKTKEV 480

Query: 476 D----IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 528
           D    + + L+E  G + D+LK      ++  +G  D  A  LL+ A S G+ P  S
Sbjct: 481 DDACGLLKELIEQ-GCAFDSLKFDECLEILTSWGNVD-EAHELLQFANSKGLWPGAS 535



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 174/367 (47%), Gaps = 14/367 (3%)

Query: 71  CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           C+  + + E  +  K  P+  + +++ L++    +   E A +V+  +Q  G K +   Y
Sbjct: 25  CEEAQLLFEELKAAKWTPD--VVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTY 82

Query: 131 TTLITTCAKSGKVDA-------MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
            TL+    K+G+ D        M +N   PD   +N LI+  G++G +  AF + AEM  
Sbjct: 83  NTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRE 142

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
                 PD  T  +L+      G+  +A E+ + + ++        Y+  I    + G+ 
Sbjct: 143 --RGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGET 200

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
             A  ++ +M ++G  PD +  +AL+D  G AG+V+ A E+L E K +G+  G+++Y++L
Sbjct: 201 VKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNAL 260

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +       +  +A  L + MK    KP V T + LIT L    QL +  +VL  M+  G 
Sbjct: 261 IAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGC 320

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKART 420
            P+TITY+ L+    +   +     L  + K  G  P++V +  +I    +  R E A  
Sbjct: 321 PPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACV 380

Query: 421 LNEHVLS 427
           L E + S
Sbjct: 381 LFEEMES 387



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 186/422 (44%), Gaps = 20/422 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + GR  + ++LLE+MER G       Y +    + K  + +K AF+ F+ 
Sbjct: 151 TYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVK-AFKLFQE 209

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   TF  LM     +   + A ++L  ++E G+K     Y  LI    K G 
Sbjct: 210 MKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGD 269

Query: 143 V-------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +       D M  N  KPD V ++ LIT   ++  +D A  VL +M  E  P  PD IT 
Sbjct: 270 LVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCP--PDTITY 327

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+     AG ++ A  ++  +           Y+  I    +    E AC ++++M  
Sbjct: 328 NTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMES 387

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G+ PD     ++I   G AG+V+ A  +  E + +G+S  +I+Y++ + +      +++
Sbjct: 388 VGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKE 447

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A +++E MK   L P V+T +AL+  L    ++     +L ++   G   +++ +   L 
Sbjct: 448 ARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLE 507

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE-HVLSFNSGRP 433
                 +V+    LL  A   G+ P    +  +I   ++    +   N    L    G+P
Sbjct: 508 ILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKP 567

Query: 434 QI 435
            I
Sbjct: 568 DI 569



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 178/377 (47%), Gaps = 15/377 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           + L + GR+ + ++LL++M+ +G+      Y+A      K    + EA+     +     
Sbjct: 227 DALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLV-EAYNLLDEMKRNGC 285

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---A 145
            P + T++ L++    +   + A QVL+ +++ G   D   Y TLI    K+G ++    
Sbjct: 286 KPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGR 345

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +F+ +K     PD V ++ LITA G++  V+ A  +  EM  E   + PD  T  +++  
Sbjct: 346 LFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEM--ESVGIQPDLFTYCSIITV 403

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              AGQVD A  ++  +    +      Y   +N   + G ++ A  +++DM + G++PD
Sbjct: 404 LGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPD 463

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
                AL+       +V+ A  +L+E   QG +   + +   +   ++  N  +A EL +
Sbjct: 464 VATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQ 523

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
              S  L P  S+ NALI AL    ++ +    L D+K  G  P+ ++YS L+ A  +  
Sbjct: 524 FANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTG 583

Query: 381 DVEVGLMLLSQAKEDGV 397
            ++    LL +  + G+
Sbjct: 584 QIDTAFELLEEMSKRGL 600



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 124/257 (48%), Gaps = 2/257 (0%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P+ V +N+L+ A  ++G  + A  +  E+ A      PD ++   L+ +   AG+ + A 
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWT--PDVVSYSCLINSLGRAGKWEAAL 64

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           EV   +     K     Y   ++C  + G ++ A  +  +M   G +PD    + LI   
Sbjct: 65  EVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTL 124

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
           G AG++  AF +  E + +G      +Y+SL+         QKA+EL E M+     P V
Sbjct: 125 GKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDV 184

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T ++LIT L    +  K  ++  +MK  G  P++IT++ L+ A  +   V+  L LL +
Sbjct: 185 MTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDE 244

Query: 392 AKEDGVIPNLVMFKCII 408
            KE GV P +V +  +I
Sbjct: 245 MKERGVKPGVVTYNALI 261



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 172/359 (47%), Gaps = 19/359 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + G + E  +LL++M+R G       Y      + K+ + + EA +  K 
Sbjct: 256 TYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQ-LDEACQVLKK 314

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T+N L++    +     A ++   ++  G   D   Y+TLIT   K+ +
Sbjct: 315 MEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAAR 374

Query: 143 VDA---MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           V++   +FE      ++PD   + ++IT  G++G VD A  + +EM  +   + PD IT 
Sbjct: 375 VESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGK--GLSPDVITY 432

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            A + +    G+   AR++++ + +  +      Y   +   S+T + + AC +  ++ +
Sbjct: 433 NAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIE 492

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           +G   D +     ++     G V+ A E+LQ A ++G+  G  SY++L+ A + A    +
Sbjct: 493 QGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSE 552

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           A    E +K    KP + + ++LI+AL    Q+    E+L +M   GL  +  +YS L+
Sbjct: 553 AFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLV 611



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 141/321 (43%), Gaps = 15/321 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           LI+  ++ E   +L+ ME++G    D + +    N       + +A R F  +     NP
Sbjct: 299 LIKASQLDEACQVLKKMEKEGC-PPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNP 357

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMF 147
            + T++ L++    +   E A  +   ++  G++ D   Y ++IT   K+G+VD    +F
Sbjct: 358 DVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLF 417

Query: 148 ENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
             ++     PD + +NA + + G+ G    A  +  +M      + PD  T  AL+   +
Sbjct: 418 SEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKE--SGLLPDVATYDALLLGLS 475

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              +VD A  + K + +         +   +   +  G+ + A  +      KG+ P   
Sbjct: 476 KTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGAS 535

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +ALID    AG+V  AF  L++ K QG    I+SYSSL+ A         A EL E M
Sbjct: 536 SYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEM 595

Query: 323 KSIKLKPTVSTMNALITALCD 343
               LK +  + + L+  L D
Sbjct: 596 SKRGLKLSPRSYSNLVRKLQD 616



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 73/131 (55%), Gaps = 2/131 (1%)

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
           S  +++Y+SL+ A + A   ++A  L+E +K+ K  P V + + LI +L    +    +E
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           V+++M++ G  PN  TY+ L+    +    +  L LL++ +++G +P++  + C+I    
Sbjct: 66  VVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125

Query: 413 R--RYEKARTL 421
           +  R  +A TL
Sbjct: 126 KAGRLSEAFTL 136


>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
          Length = 659

 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 186/428 (43%), Gaps = 51/428 (11%)

Query: 34  RLIRQGRISECIDLLEDM--ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT 91
           +++ QGR+ + +DLL  +  E  GL  +D+         C  ++   +  R   ++  P 
Sbjct: 165 QVVAQGRLGKAVDLLVSLSEEEDGLHAIDRALVNFVLYNCMRRR---DWTRALTVLDAPL 221

Query: 92  LST----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           +      F M +  C  ++    A  VLR +Q  GL+ D   + T +    K+G+ D   
Sbjct: 222 IEVDVVGFTMAIKACGQARRWREALGVLREMQARGLRPDLVSFNTAMDALGKAGQYDLAL 281

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA----------------- 182
           E           P+ V +N  I ACG++G VDRA ++L EM                   
Sbjct: 282 ELFTEIEDHGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAF 341

Query: 183 -----------------EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
                            E   VDPD I+    M  CA AG+ +RA E+        ++  
Sbjct: 342 AKKNQWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQPD 401

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
              Y   ++ C + G++  A  ++  M + GV PD V  +  +     A K +AA +IL+
Sbjct: 402 VVSYNTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILR 461

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           E + + I+  + SY+  + AC  A  W++ALEL E M+   +   V T  A + A C G 
Sbjct: 462 EMEARSIAPNVKSYTIAVDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDACCRGG 521

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
            + + + +L +M   G+ PN ++Y+I + A  R    +    +L Q  + G+  + V ++
Sbjct: 522 AVDRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKWDRASAVLEQMVQRGLRLDSVSYR 581

Query: 406 CIIGMCSR 413
             +    R
Sbjct: 582 TALSTAGR 589



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 158/357 (44%), Gaps = 16/357 (4%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTF 95
           R  E + +L +M+ +GL   D V      +          A   F  + +    P L ++
Sbjct: 241 RWREALGVLREMQARGLRP-DLVSFNTAMDALGKAGQYDLALELFTEIEDHGFAPNLVSY 299

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           N  +  C  +   + A ++LR +Q   ++ D   Y T++   AK  +  A  E       
Sbjct: 300 NTAIHACGRAGMVDRAHELLREMQGLSVRPDSVSYNTVMAAFAKKNQWKAALELLAEMKE 359

Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              V PD + +N  +  C ++G  +RA ++L E  A    + PD ++   +M AC  AG+
Sbjct: 360 APGVDPDLISYNTAMHVCAKAGRWERATELLTE--ALGQGLQPDVVSYNTVMHACGRAGE 417

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
             +A +++ M+ +  +      +  A++ C++   W+ A  +  +M  + + P+    + 
Sbjct: 418 YLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREMEARSIAPNVKSYTI 477

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
            +D  G AG+ E A E+++E + +G+   + +Y++ M AC       + L L E M    
Sbjct: 478 AVDACGRAGEWERALELMEEMEVRGVPANVHTYTAAMDACCRGGAVDRVLVLLEEMDGKG 537

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           ++P V +    + A+    +  +   VL  M   GL  ++++Y   L    R  D E
Sbjct: 538 VEPNVVSYTIAMDAMNRVGKWDRASAVLEQMVQRGLRLDSVSYRTALSTAGRAGDEE 594


>gi|253761754|ref|XP_002489252.1| hypothetical protein SORBIDRAFT_0012s017730 [Sorghum bicolor]
 gi|241947112|gb|EES20257.1| hypothetical protein SORBIDRAFT_0012s017730 [Sorghum bicolor]
          Length = 142

 Score =  148 bits (374), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 79/143 (55%), Positives = 103/143 (72%), Gaps = 4/143 (2%)

Query: 530 KEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKT 589
           KE  +V+DARKL+I+TA+V LL  L+ L+HRLAAG++LPNV ILLP EK Q+     EKT
Sbjct: 2   KETRIVIDARKLKIYTAEVSLLRTLRSLKHRLAAGSRLPNVTILLPTEKKQVDIDEKEKT 61

Query: 590 IDIAERTTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPKLASPFSGKPGELSSL 649
           + +A R  QA+ +LLRRLG+ YQG+ S+G++RINGL L+RWF PKL +  S    +L  L
Sbjct: 62  LKLAGRIGQAVGSLLRRLGISYQGDESHGRMRINGLTLRRWFNPKLNNKSSAAAADLLPL 121

Query: 650 --QLGKFITHQQRNIRTGNLSLE 670
             +L K I  QQR+IR  NLSLE
Sbjct: 122 PSRLAKGIAGQQRDIR--NLSLE 142


>gi|215687268|dbj|BAG91833.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 137

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/135 (50%), Positives = 99/135 (73%)

Query: 415 YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 474
           ++   +L   V++FN G+PQIENKWTS A+ VYREAI  G +P+ +V+S+VLGCL+ P++
Sbjct: 2   FDNDLSLGNIVVTFNLGKPQIENKWTSSAIKVYREAISTGLLPSSDVLSQVLGCLRFPHD 61

Query: 475 ADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPV 534
             +    +EN+G+S D     N+ SL++GFGEYD RAFS+LEEAAS G V  +S K+  +
Sbjct: 62  NTLTNTFIENMGISCDIPHHPNVNSLLEGFGEYDIRAFSILEEAASLGAVESISMKDTRI 121

Query: 535 VVDARKLEIHTAKVY 549
           +VDARK +I+TA+V+
Sbjct: 122 LVDARKSKIYTAEVF 136


>gi|253761756|ref|XP_002489253.1| hypothetical protein SORBIDRAFT_0012s017740 [Sorghum bicolor]
 gi|241947113|gb|EES20258.1| hypothetical protein SORBIDRAFT_0012s017740 [Sorghum bicolor]
          Length = 656

 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 119/203 (58%), Gaps = 27/203 (13%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           ++P+  T  AL+  CA AGQV +A   Y ++    +K    V+   I+ C ++G    A 
Sbjct: 429 IEPNVNTYSALIDGCARAGQVAKAFGAYGIMSSKKVKPDRVVFNALISACGESGAVARAF 488

Query: 247 SVYDDMT--------KKGVIPDEV---------------FLSALIDFAGHAGKVEAAFEI 283
            V  +MT         K +IPD V               FLSAL+D AGHA + +AAFEI
Sbjct: 489 DVLSEMTAESSESKGSKPIIPDHVTVGALMKTCIQACQMFLSALVDVAGHARRADAAFEI 548

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           +++A+ +G+ VG I+YSSLMGAC NA++W+KAL+LYE +KSIKL P+VS MNALIT+LC+
Sbjct: 549 MKDARAKGLLVGTIAYSSLMGACCNAEDWKKALQLYEEIKSIKLTPSVSMMNALITSLCN 608

Query: 344 ----GDQLPKTMEVLSDMKSLGL 362
                 ++ KT  +L      GL
Sbjct: 609 VWSGSSEIDKTTNILKRKTIRGL 631



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 116/257 (45%), Gaps = 81/257 (31%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100
           + +C+DLLE ME+ GLLDM KV                    F ++V             
Sbjct: 399 LKDCMDLLESMEQNGLLDMKKV--------------------FHEMVG------------ 426

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--------ENVKP 152
                               AG++ +   Y+ LI  CA++G+V   F        + VKP
Sbjct: 427 --------------------AGIEPNVNTYSALIDGCARAGQVAKAFGAYGIMSSKKVKP 466

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAE------VHPVDPDHITIGALMKACAN--- 203
           DRVVFNALI+ACG+SGAV RAFDVL+EM AE        P+ PDH+T+GALMK C     
Sbjct: 467 DRVVFNALISACGESGAVARAFDVLSEMTAESSESKGSKPIIPDHVTVGALMKTCIQACQ 526

Query: 204 ---------AGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYDD 251
                    AG   RA   ++++     KG       Y+  +  C    DW+ A  +Y++
Sbjct: 527 MFLSALVDVAGHARRADAAFEIMKDARAKGLLVGTIAYSSLMGACCNAEDWKKALQLYEE 586

Query: 252 MTKKGVIPDEVFLSALI 268
           +    + P    ++ALI
Sbjct: 587 IKSIKLTPSVSMMNALI 603



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 29/174 (16%)

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           ++  E    GI   + +YS+L+  C+ A    KA   Y  M S K+KP     NALI+A 
Sbjct: 419 KVFHEMVGAGIEPNVNTYSALIDGCARAGQVAKAFGAYGIMSSKKVKPDRVVFNALISAC 478

Query: 342 CDGDQLPKTMEVLSDMK--------SLGLCPNTITYSILLVAC----------------- 376
            +   + +  +VLS+M         S  + P+ +T   L+  C                 
Sbjct: 479 GESGAVARAFDVLSEMTAESSESKGSKPIIPDHVTVGALMKTCIQACQMFLSALVDVAGH 538

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLSF 428
            R+ D    +M  ++AK  G++   + +  ++G C  +  ++KA  L E + S 
Sbjct: 539 ARRADAAFEIMKDARAK--GLLVGTIAYSSLMGACCNAEDWKKALQLYEEIKSI 590


>gi|298712182|emb|CBJ33054.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 903

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 120/518 (23%), Positives = 209/518 (40%), Gaps = 92/518 (17%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKSQKAIKEAFRFFKLVP-NPTLS 93
           R G+  E   LL +M+  G+     VY A F  F      +A     R     P  P + 
Sbjct: 242 RCGKADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVF 301

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAMFE---- 148
            +N+ +  C    + E A  +L  ++E  G++ D   Y  ++  C K+G+ +   E    
Sbjct: 302 NYNLAICTCTDCGEWEEALDLLHFMREVGGVEPDVVTYNIVVAACGKAGQGEKAIEIFRE 361

Query: 149 ----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                +KPD + F   I+ACG  G  + A  +  EM  E   V P+ IT  A+M AC  A
Sbjct: 362 MSEVGIKPDVISFTTAISACGSCGLSEEALSIFREM--ERAGVRPNIITHNAVMSACIAA 419

Query: 205 GQVD---------------------------------------------------RAREV 213
           GQ +                                                   RA  +
Sbjct: 420 GQWEEALDFFTEVVDGSGAANGGGGGGPPPDPVEVADACSYNTALSACEVGEQWGRALSL 479

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
            + + K  +K     Y   I+ C + G+ + A ++  +M ++G++PD +  ++ I    +
Sbjct: 480 LRDMPKRGVKPVVISYNTVISACGKCGEGDQALALLREMPERGLMPDVITFNSAIAALSN 539

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           +G+ + A  +++E    G++   I+YSS +   ++A  W++AL L   M+   + PTV  
Sbjct: 540 SGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHAGRWEQALSLLREMQGAGVSPTVIC 599

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
             A I A  +  +  + + +L +M + G+ PN  +YS  + AC +    E GL LL++  
Sbjct: 600 YTAAIRACGEAGKGDEALLLLREMPTAGVTPNLFSYSATISACGKDGRWEQGLALLNEMP 659

Query: 394 EDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVA 453
             G+ PN   +   I  C                       I  +W   A+  +R  I +
Sbjct: 660 ALGLTPNEFCYTAAITGCG----------------------IGGQWER-AVATFRSMIAS 696

Query: 454 GTIPTV----EVVSKVLGCLQLPYNADIRERLVENLGV 487
           G  PTV      VS +  C ++    ++   + E  G+
Sbjct: 697 GIQPTVVGYTSAVSALAHCGEVDLALELLSEMKEEAGI 734



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 179/417 (42%), Gaps = 22/417 (5%)

Query: 31  SYNRLIRQGRISE----CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN  +    + E     + LL DM ++G+  +   Y+    + C       +A    + 
Sbjct: 459 SYNTALSACEVGEQWGRALSLLRDMPKRGVKPVVISYNT-VISACGKCGEGDQALALLRE 517

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +P     P + TFN  ++  ++S   + A +++R +  AG+ AD   Y++ +T  A +G+
Sbjct: 518 MPERGLMPDVITFNSAIAALSNSGRPDDAVRLMREMPRAGVAADAITYSSALTGLAHAGR 577

Query: 143 VDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
            +             V P  + + A I ACG++G  D A  +L EM      V P+  + 
Sbjct: 578 WEQALSLLREMQGAGVSPTVICYTAAIRACGEAGKGDEALLLLREM--PTAGVTPNLFSY 635

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            A + AC   G+ ++   +   +    +      YT AI  C   G WE A + +  M  
Sbjct: 636 SATISACGKDGRWEQGLALLNEMPALGLTPNEFCYTAAITGCGIGGQWERAVATFRSMIA 695

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQ 313
            G+ P  V  ++ +    H G+V+ A E+L E K + GI     +Y++++ AC N     
Sbjct: 696 SGIQPTVVGYTSAVSALAHCGEVDLALELLSEMKEEAGIEPNEQTYAAVILACGNGGQGH 755

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
              ++   M S  + P ++   + I A  +     +   +L +M++ G+ P    Y+  +
Sbjct: 756 LVAQVQRDMASAGITPRLTGYLSAIRASGECGNWSEATSLLGEMEAAGVPPTVSCYNAAI 815

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSF 428
            AC +    +  L LL +    G++ +       I  C +  R  KA  L E +L  
Sbjct: 816 TACGKSGKWQEALDLLDEMPGKGLVRDSGTLSAAISACQKAGRGVKAAGLVEEMLEM 872



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 116/505 (22%), Positives = 208/505 (41%), Gaps = 82/505 (16%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           +R+ +  R  E +D+L  M   G +      +A   + C     ++EA    +      +
Sbjct: 132 SRMAKCFRWGEALDILARMAELGAMPNSYCVNA-ALDACGKAGRVQEALGLMRDARASGI 190

Query: 93  S----TFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVD--- 144
                ++N  +  C +  D E A  ++R ++ E G+K +   Y   I  C + GK D   
Sbjct: 191 ELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVCGRCGKADEAA 250

Query: 145 -------------------AMFEN---------------------VKPDRVVFNALITAC 164
                              A+F                       VKP+   +N  I  C
Sbjct: 251 SLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNLAICTC 310

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
              G  + A D+L  M  EV  V+PD +T   ++ AC  AGQ ++A E+++ + +  IK 
Sbjct: 311 TDCGEWEEALDLLHFMR-EVGGVEPDVVTYNIVVAACGKAGQGEKAIEIFREMSEVGIK- 368

Query: 225 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
            P+V  +T AI+ C   G  E A S++ +M + GV P+ +  +A++     AG+ E A +
Sbjct: 369 -PDVISFTTAISACGSCGLSEEALSIFREMERAGVRPNIITHNAVMSACIAAGQWEEALD 427

Query: 283 ILQE---------------AKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIK 326
              E                    + V    SY++ + AC   + W +AL L   M    
Sbjct: 428 FFTEVVDGSGAANGGGGGGPPPDPVEVADACSYNTALSACEVGEQWGRALSLLRDMPKRG 487

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           +KP V + N +I+A     +  + + +L +M   GL P+ IT++  + A       +  +
Sbjct: 488 VKPVVISYNTVISACGKCGEGDQALALLREMPERGLMPDVITFNSAIAALSNSGRPDDAV 547

Query: 387 MLLSQAKEDGVIPNLVMF-KCIIGMC-SRRYEKARTL---------NEHVLSFNSG-RPQ 434
            L+ +    GV  + + +   + G+  + R+E+A +L         +  V+ + +  R  
Sbjct: 548 RLMREMPRAGVAADAITYSSALTGLAHAGRWEQALSLLREMQGAGVSPTVICYTAAIRAC 607

Query: 435 IENKWTSLALMVYREAIVAGTIPTV 459
            E      AL++ RE   AG  P +
Sbjct: 608 GEAGKGDEALLLLREMPTAGVTPNL 632



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 1/186 (0%)

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           VY+  I+  ++   W  A  +   M + G +P+   ++A +D  G AG+V+ A  ++++A
Sbjct: 126 VYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGRVQEALGLMRDA 185

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS-IKLKPTVSTMNALITALCDGDQ 346
           +  GI + ++SY+  + AC    +W+ AL +   M++   +KP   T  A I       +
Sbjct: 186 RASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQAAIKVCGRCGK 245

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
             +   +L +MK  G+   T  YS +  A  R D  +     L +  +  V PN+  +  
Sbjct: 246 ADEAASLLIEMKDGGVPLKTSVYSAVFNAFRRVDHWQAAASTLREIHDWPVKPNVFNYNL 305

Query: 407 IIGMCS 412
            I  C+
Sbjct: 306 AICTCT 311



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 61/128 (47%), Gaps = 1/128 (0%)

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
           AK    +V    YS  +   +    W +AL++   M  +   P    +NA + A     +
Sbjct: 115 AKAPAAAVSTFVYSKCISRMAKCFRWGEALDILARMAELGAMPNSYCVNAALDACGKAGR 174

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFK 405
           + + + ++ D ++ G+  + ++Y+  + AC    D E+ L ++ + + E G+ PN + ++
Sbjct: 175 VQEALGLMRDARASGIELDVVSYNCAIPACVTGGDWELALSMIREMEAEYGIKPNHITYQ 234

Query: 406 CIIGMCSR 413
             I +C R
Sbjct: 235 AAIKVCGR 242


>gi|299469655|emb|CBN76509.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 787

 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 171/362 (47%), Gaps = 19/362 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R  R +  ++LL +ME+ G+  +   Y A     C   K  ++A    + +P     PT+
Sbjct: 401 RGRRWARALELLREMEKNGVEPIVMGYDA-CIAACGDGKQWEQAVALLREMPTVGVTPTV 459

Query: 93  STFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK 151
            +++  ++ C  S   + A ++LR + QEAG+  D   Y   +T   +  + +     ++
Sbjct: 460 VSYSHAIAACGQSYQWKPALELLREMPQEAGINPDAVCYNNCMTALGRGLQWEMALTLLR 519

Query: 152 PDRVV--------FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
               V        +   I ACG +G    A  +L EM AE+  V P+ I+  A + AC  
Sbjct: 520 EMPSVGLPIKAQSYTVAIKACGDAGEGKPAVALLREMQAELS-VPPNVISYTAAIAACGK 578

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             Q  +A E+ + +    +      YT AI  C  +G WE A S+  +M   G  P+   
Sbjct: 579 GDQWKQALELLREMASMGVSPNDRTYTAAITACGNSGKWEEALSLLREMPTMGADPNIAS 638

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +A I   G+ G+ E A E+ +E  + GI+  + +Y++ + AC N+    +A+EL   M 
Sbjct: 639 YTATIKACGNGGQWERAVELFRELPSAGITADVQAYNACVQACGNSGAVDQAVELLREMA 698

Query: 324 -SIKLKPTVSTMNALITALC--DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC-ERK 379
            +  L+P V T NA + A    DG +  K +E+L +M   G+ PN +T+   L AC ER 
Sbjct: 699 PAAGLEPNVFTYNAALMACSCPDGGRWGKALELLEEMAWRGIAPNAVTHESALAACGERG 758

Query: 380 DD 381
            D
Sbjct: 759 RD 760



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 131/533 (24%), Positives = 212/533 (39%), Gaps = 111/533 (20%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---------------- 139
           N +++  A+    +   +V+R ++EAGL  D   YT  I  C K                
Sbjct: 218 NAVLNTFAADGRWQVVLEVMRQMREAGLTPDALTYTNAIKACGKGREWRRSVALLKEMSA 277

Query: 140 ---------------SGKVDAM------------FENVKPDRVVFNALITACGQSGAVDR 172
                          + K+  M               ++P+ + +N  I ACG  G  + 
Sbjct: 278 HGVELNSIHYVCAMTACKISGMGAEAVGLLREMQAAGIEPNVICYNTAIAACGTGGQSEV 337

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
           A D+L EMNA    V P+  T  A ++A  +  + ++A  V + + +  +    + Y + 
Sbjct: 338 AVDLLEEMNA--LGVRPNTQTCLAAVRAAGDRDRGEQAVSVLRSMSEAGVAAEAKCYAVT 395

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           I  C +   W  A  +  +M K GV P  +   A I   G   + E A  +L+E    G+
Sbjct: 396 IKACGRGRRWARALELLREMEKNGVEPIVMGYDACIAACGDGKQWEQAVALLREMPTVGV 455

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVSTMNALITALCDGDQLPKTM 351
           +  ++SYS  + AC  +  W+ ALEL   M +   + P     N  +TAL  G Q    +
Sbjct: 456 TPTVVSYSHAIAACGQSYQWKPALELLREMPQEAGINPDAVCYNNCMTALGRGLQWEMAL 515

Query: 352 EVLSDMKSLGL-------------C-----------------------PNTITYSILLVA 375
            +L +M S+GL             C                       PN I+Y+  + A
Sbjct: 516 TLLREMPSVGLPIKAQSYTVAIKACGDAGEGKPAVALLREMQAELSVPPNVISYTAAIAA 575

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTL---------NEH 424
           C + D  +  L LL +    GV PN   +   I  C  S ++E+A +L         + +
Sbjct: 576 CGKGDQWKQALELLREMASMGVSPNDRTYTAAITACGNSGKWEEALSLLREMPTMGADPN 635

Query: 425 VLSFNSGRPQIEN--KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLV 482
           + S+ +      N  +W   A+ ++RE   AG    V+  +    C+Q   N+   ++ V
Sbjct: 636 IASYTATIKACGNGGQWER-AVELFRELPSAGITADVQAYN---ACVQACGNSGAVDQAV 691

Query: 483 ENLGVSADALK-RSNL---------CSLIDGFGEYDPRAFSLLEEAASFGIVP 525
           E L   A A     N+         CS  DG G +  +A  LLEE A  GI P
Sbjct: 692 ELLREMAPAAGLEPNVFTYNAALMACSCPDG-GRWG-KALELLEEMAWRGIAP 742



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 187/431 (43%), Gaps = 35/431 (8%)

Query: 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVF 157
           +D + A +VLR   E     D  +   ++ T A  G+   + E         + PD + +
Sbjct: 193 RDCDEAERVLRQALECPGVVDTVMCNAVLNTFAADGRWQVVLEVMRQMREAGLTPDALTY 252

Query: 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 217
              I ACG+     R+  +L EM+A  H V+ + I     M AC  +G    A  + + +
Sbjct: 253 TNAIKACGKGREWRRSVALLKEMSA--HGVELNSIHYVCAMTACKISGMGAEAVGLLREM 310

Query: 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 277
               I+     Y  AI  C   G  E A  + ++M   GV P+     A +  AG   + 
Sbjct: 311 QAAGIEPNVICYNTAIAACGTGGQSEVAVDLLEEMNALGVRPNTQTCLAAVRAAGDRDRG 370

Query: 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
           E A  +L+     G++     Y+  + AC   + W +ALEL   M+   ++P V   +A 
Sbjct: 371 EQAVSVLRSMSEAGVAAEAKCYAVTIKACGRGRRWARALELLREMEKNGVEPIVMGYDAC 430

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ-AKEDG 396
           I A  DG Q  + + +L +M ++G+ P  ++YS  + AC +    +  L LL +  +E G
Sbjct: 431 IAACGDGKQWEQAVALLREMPTVGVTPTVVSYSHAIAACGQSYQWKPALELLREMPQEAG 490

Query: 397 VIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAG 454
           + P+ V +   +    R  ++E A TL   + S   G P I+ +  ++A+    +A    
Sbjct: 491 INPDAVCYNNCMTALGRGLQWEMALTLLREMPSV--GLP-IKAQSYTVAIKACGDA--GE 545

Query: 455 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSL 514
             P V ++ ++   L +P N      +     ++A        C    G G+   +A  L
Sbjct: 546 GKPAVALLREMQAELSVPPNV-----ISYTAAIAA--------C----GKGDQWKQALEL 588

Query: 515 LEEAASFGIVP 525
           L E AS G+ P
Sbjct: 589 LREMASMGVSP 599


>gi|299471552|emb|CBN80038.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 416

 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 182/410 (44%), Gaps = 38/410 (9%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTL 92
           R G   + +  L+ M+R     + +  H      C      ++A +  + +P    +P +
Sbjct: 6   RGGDRRKALRALDGMKRLPRELLHQKSHCMVITACGRGGQWEQAVKLLREMPTAGLSPNV 65

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK- 151
            T+N + + CA  +  +GA  +L+ +   GL  D   Y++ +  CAK  +       +K 
Sbjct: 66  ITYNAVFAACAKGEQWKGALALLKEMTAVGLTPDVITYSSAVDACAKGEQWKGALALLKE 125

Query: 152 -------PDRVVFNALITACGQSGAVDRAFDVLAEMNA----------EVHPVDPDHITI 194
                  PD + +++ + AC +      A  +L EM A             P      T 
Sbjct: 126 MTAVGLTPDVITYSSAVDACAKGEQWKEALALLKEMTAVGLTPNVISYNGLPSMSPWCTY 185

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDM 252
            + +  C+  GQ      + K +    +  TP V  Y  AI+ CS+ G W+ A ++  +M
Sbjct: 186 NSAIDGCSKGGQWKETLALLKEMAAVGL--TPNVITYNSAIDACSKGGQWKEALALLKEM 243

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVE-----------AAFEILQEAKNQGISVGIISYSS 301
           T  G+ PD +  S+ ID        +            A  +L+E    G++  ++SYS+
Sbjct: 244 TAVGLTPDVISYSSAIDACSKGATAQLFPCAKGEQWKGALALLKEMTVVGLTPNVVSYSA 303

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
            + AC+    W+ AL L + M ++ L P V T N+ I A   G Q    + +L +M ++G
Sbjct: 304 AI-ACAKGDQWKVALALLKKMTAVGLTPDVITCNSAIDACSKGGQWETALALLKEMAAVG 362

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           L P+ + Y+  + AC R    + G+ LL + +E GV+P+++ +  ++  C
Sbjct: 363 LTPSVVGYNSAIDACARGGRWKEGVDLLEEMRELGVVPDVITYHALMVTC 412



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 174/389 (44%), Gaps = 43/389 (11%)

Query: 74  QKAIKEAFRFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           +KA++ A    K +P   L   +  M+++ C      E A ++LR +  AGL  +   Y 
Sbjct: 11  RKALR-ALDGMKRLPRELLHQKSHCMVITACGRGGQWEQAVKLLREMPTAGLSPNVITYN 69

Query: 132 TLITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
            +   CAK  +       +K        PD + +++ + AC +      A  +L EM A 
Sbjct: 70  AVFAACAKGEQWKGALALLKEMTAVGLTPDVITYSSAVDACAKGEQWKGALALLKEMTA- 128

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--------------Y 229
              + PD IT  + + ACA   Q   A  + K +    +  TP V              Y
Sbjct: 129 -VGLTPDVITYSSAVDACAKGEQWKEALALLKEMTAVGL--TPNVISYNGLPSMSPWCTY 185

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
             AI+ CS+ G W+   ++  +M   G+ P+ +  ++ ID     G+ + A  +L+E   
Sbjct: 186 NSAIDGCSKGGQWKETLALLKEMAAVGLTPNVITYNSAIDACSKGGQWKEALALLKEMTA 245

Query: 290 QGISVGIISYSSLMGACSNA-----------KNWQKALELYEHMKSIKLKPTVSTMNALI 338
            G++  +ISYSS + ACS             + W+ AL L + M  + L P V + +A I
Sbjct: 246 VGLTPDVISYSSAIDACSKGATAQLFPCAKGEQWKGALALLKEMTVVGLTPNVVSYSAAI 305

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
            A   GDQ    + +L  M ++GL P+ IT +  + AC +    E  L LL +    G+ 
Sbjct: 306 -ACAKGDQWKVALALLKKMTAVGLTPDVITCNSAIDACSKGGQWETALALLKEMAAVGLT 364

Query: 399 PNLVMFKCIIGMCSR--RYEKARTLNEHV 425
           P++V +   I  C+R  R+++   L E +
Sbjct: 365 PSVVGYNSAIDACARGGRWKEGVDLLEEM 393



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 171/382 (44%), Gaps = 45/382 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTL 92
           R G+  + + LL +M   GL      Y+A  F  C   +  K A    K +      P +
Sbjct: 42  RGGQWEQAVKLLREMPTAGLSPNVITYNA-VFAACAKGEQWKGALALLKEMTAVGLTPDV 100

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK- 151
            T++  +  CA  +  +GA  +L+ +   GL  D   Y++ +  CAK  +       +K 
Sbjct: 101 ITYSSAVDACAKGEQWKGALALLKEMTAVGLTPDVITYSSAVDACAKGEQWKEALALLKE 160

Query: 152 -------PDRVVFNAL------------ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
                  P+ + +N L            I  C + G       +L EM A    + P+ I
Sbjct: 161 MTAVGLTPNVISYNGLPSMSPWCTYNSAIDGCSKGGQWKETLALLKEMAA--VGLTPNVI 218

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTG---------- 240
           T  + + AC+  GQ   A  + K +    +  TP+V  Y+ AI+ CS+            
Sbjct: 219 TYNSAIDACSKGGQWKEALALLKEMTAVGL--TPDVISYSSAIDACSKGATAQLFPCAKG 276

Query: 241 -DWEFACSVYDDMTKKGVIPDEVFLSALIDFA-GHAGKVEAAFEILQEAKNQGISVGIIS 298
             W+ A ++  +MT  G+ P+ V  SA I  A G   KV  A  +L++    G++  +I+
Sbjct: 277 EQWKGALALLKEMTVVGLTPNVVSYSAAIACAKGDQWKV--ALALLKKMTAVGLTPDVIT 334

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
            +S + ACS    W+ AL L + M ++ L P+V   N+ I A   G +  + +++L +M+
Sbjct: 335 CNSAIDACSKGGQWETALALLKEMAAVGLTPSVVGYNSAIDACARGGRWKEGVDLLEEMR 394

Query: 359 SLGLCPNTITYSILLVACERKD 380
            LG+ P+ ITY  L+V C   D
Sbjct: 395 ELGVVPDVITYHALMVTCVNYD 416



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 157/346 (45%), Gaps = 29/346 (8%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ AC   GQ ++A ++ + +    +      Y      C++   W+ A ++  +MT  G
Sbjct: 36  VITACGRGGQWEQAVKLLREMPTAGLSPNVITYNAVFAACAKGEQWKGALALLKEMTAVG 95

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD +  S+ +D      + + A  +L+E    G++  +I+YSS + AC+  + W++AL
Sbjct: 96  LTPDVITYSSAVDACAKGEQWKGALALLKEMTAVGLTPDVITYSSAVDACAKGEQWKEAL 155

Query: 317 ELYEHMKSIKLKPTV------------STMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
            L + M ++ L P V             T N+ I     G Q  +T+ +L +M ++GL P
Sbjct: 156 ALLKEMTAVGLTPNVISYNGLPSMSPWCTYNSAIDGCSKGGQWKETLALLKEMAAVGLTP 215

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 424
           N ITY+  + AC +    +  L LL +    G+ P+++ +   I  CS      +     
Sbjct: 216 NVITYNSAIDACSKGGQWKEALALLKEMTAVGLTPDVISYSSAIDACS------KGATAQ 269

Query: 425 VLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL---QLPYNADIRERL 481
           +     G      +W   AL + +E  V G  P V   S  + C    Q      + +++
Sbjct: 270 LFPCAKGE-----QWKG-ALALLKEMTVVGLTPNVVSYSAAIACAKGDQWKVALALLKKM 323

Query: 482 VENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 527
              +G++ D +  ++        G+++  A +LL+E A+ G+ P V
Sbjct: 324 TA-VGLTPDVITCNSAIDACSKGGQWE-TALALLKEMAAVGLTPSV 367



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 115/252 (45%), Gaps = 33/252 (13%)

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSA----LIDFAGHAGKVEAAFEILQEAKNQGI 292
           S+ GD   A    D M +   +P E+        +I   G  G+ E A ++L+E    G+
Sbjct: 5   SRGGDRRKALRALDGMKR---LPRELLHQKSHCMVITACGRGGQWEQAVKLLREMPTAGL 61

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
           S  +I+Y+++  AC+  + W+ AL L + M ++ L P V T ++ + A   G+Q    + 
Sbjct: 62  SPNVITYNAVFAACAKGEQWKGALALLKEMTAVGLTPDVITYSSAVDACAKGEQWKGALA 121

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM-- 410
           +L +M ++GL P+ ITYS  + AC + +  +  L LL +    G+ PN++ +  +  M  
Sbjct: 122 LLKEMTAVGLTPDVITYSSAVDACAKGEQWKEALALLKEMTAVGLTPNVISYNGLPSMSP 181

Query: 411 ----------CSRRYEKART-----------LNEHVLSFNSGRPQIE--NKWTSLALMVY 447
                     CS+  +   T           L  +V+++NS         +W   AL + 
Sbjct: 182 WCTYNSAIDGCSKGGQWKETLALLKEMAAVGLTPNVITYNSAIDACSKGGQWKE-ALALL 240

Query: 448 REAIVAGTIPTV 459
           +E    G  P V
Sbjct: 241 KEMTAVGLTPDV 252


>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
           sulphuraria]
          Length = 821

 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 177/357 (49%), Gaps = 16/357 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P + T+  L+   +   + E A ++ + ++EA +K +   Y++LI+   ++G V+   A+
Sbjct: 421 PDVVTYATLIDAFSKRMEPERALKLFQEMKEANVKPNNYCYSSLISAFCRAGYVERALAI 480

Query: 147 FENVKPDRVV-----FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE +  +R+V     FNALI   G+   VD+AF++   M      + PD IT  AL+ A 
Sbjct: 481 FEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRK--LQIQPDRITFNALISAS 538

Query: 202 ANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             A    RA E    M   Y +      Y   I+ C ++GD+  A  V+++M  KG+ P 
Sbjct: 539 GKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPC 598

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  +ALI  A  +  + A+F+I+     +G++    + ++L+ AC+  ++   A E+ E
Sbjct: 599 TVTFNALIYGASRSHDLAASFKIVDLMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLE 658

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
             K + + P   T N  I A+   D   K  E+LS+M+S G+ P+ +T + ++  C R+ 
Sbjct: 659 KFKQLGVHPDNVTFNTFIDAVGKLDSSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRG 718

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF-NSGRPQIE 436
            +++         E  + P+ V F  +I      Y     L++ V+++ N  R Q+E
Sbjct: 719 KIDLMERGFHMFHEKRLEPDSVTFSLLI----ENYVSHHLLDKAVIAYHNCKRQQLE 771



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 172/390 (44%), Gaps = 40/390 (10%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA----- 202
           E+++P+   ++ALI   G+ G   RA      M + +  + P+ +T  A++K  +     
Sbjct: 341 EHIQPNIYTYSALIETLGKGGLCVRALSQFRRM-SRIDNIAPNTVTYNAVIKIVSRCKRN 399

Query: 203 NAGQVDRAREVYKMIHKYNIKG-TPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIP 259
           + G + RA     ++ +   KG  P+V T A  I+  S+  + E A  ++ +M +  V P
Sbjct: 400 DCGGITRA---MSLLREMATKGCIPDVVTYATLIDAFSKRMEPERALKLFQEMKEANVKP 456

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    S+LI     AG VE A  I +E  ++ I   + ++++L+      +   KA E+Y
Sbjct: 457 NNYCYSSLISAFCRAGYVERALAIFEEMTHERIVPDVFAFNALIDGFGKLRQVDKAFEIY 516

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSILLVACER 378
           + M+ ++++P   T NALI+A        + +E + DM  + GL P+  +Y+ L+ AC +
Sbjct: 517 DRMRKLQIQPDRITFNALISASGKAKNSIRALEAMGDMTEIYGLTPDRHSYNALIDACGK 576

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG-RPQIEN 437
             D      +  + +  G+ P  V F  +I   SR ++ A +     L    G  P    
Sbjct: 577 SGDFTKAYEVFEEMRTKGIRPCTVTFNALIYGASRSHDLAASFKIVDLMLQEGLNPDAYT 636

Query: 438 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 497
             T ++    R+ +        EV+ K                  + LGV  D +     
Sbjct: 637 MNTLISACNRRQDLSTA----FEVLEK-----------------FKQLGVHPDNV---TF 672

Query: 498 CSLIDGFGEYDP--RAFSLLEEAASFGIVP 525
            + ID  G+ D   + F LL E  S GI P
Sbjct: 673 NTFIDAVGKLDSSEKMFELLSEMESRGISP 702



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 89/204 (43%), Gaps = 25/204 (12%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           HSYN LI    + G  ++  ++ E+M  KG+      ++A  +   +S   +  +F+   
Sbjct: 565 HSYNALIDACGKSGDFTKAYEVFEEMRTKGIRPCTVTFNALIYGASRSHD-LAASFKIVD 623

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           L+     NP   T N L+S C   +D   AF+VL   ++ G+  D   + T I    K  
Sbjct: 624 LMLQEGLNPDAYTMNTLISACNRRQDLSTAFEVLEKFKQLGVHPDNVTFNTFIDAVGKLD 683

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPD 190
             + MFE         + P +V  N ++  CG+ G +D   R F +  E   E     PD
Sbjct: 684 SSEKMFELLSEMESRGISPSKVTLNTIVGCCGRRGKIDLMERGFHMFHEKRLE-----PD 738

Query: 191 HITIGALMKACANAGQVDRAREVY 214
            +T   L++   +   +D+A   Y
Sbjct: 739 SVTFSLLIENYVSHHLLDKAVIAY 762


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 117/490 (23%), Positives = 226/490 (46%), Gaps = 46/490 (9%)

Query: 23   HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
            H+    + +Y  L+    + GR+ E + LL +ME++G       Y +   +  K  +  +
Sbjct: 557  HECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEE 616

Query: 79   EAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
                F ++V       +ST++++++    S D + A  V   ++E G++     Y TL++
Sbjct: 617  SLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLS 676

Query: 136  TCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
            +  K  K+D   +        ++ PD  V+N ++    +S  VD A  ++  M  +   +
Sbjct: 677  SLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQ--NI 734

Query: 188  DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEF 244
             PD  T  +L+     +G   R  E + M  K   +G  P+V  YT  ++   + G    
Sbjct: 735  LPDLFTYTSLLDGLGKSG---RLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSH 791

Query: 245  ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
            A  ++  M KK  +PD V  S+LID  G  G+VE A+   + + ++G +  +  YSSL+ 
Sbjct: 792  ALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLID 851

Query: 305  ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
            +        +ALEL+E M+  +  P + T N L++ L    +L    ++L +M+ +G  P
Sbjct: 852  SFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVP 911

Query: 365  NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTL 421
            + +TY+IL+    +   V+       + KE G++P+++ F  +I   G   +  E     
Sbjct: 912  DLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELF 971

Query: 422  --------NEHVLSFNS-----GRPQIENKWTSLALMVYREAIVAGTIP---TVEVVSKV 465
                    N  V+++N      GR    ++    A M++ E  V G +P   T+ ++ ++
Sbjct: 972  DSMEEEGYNPSVVTYNVLIDILGRAGKVHE----AAMIFHEMKVKGCMPDGITIGIMKRI 1027

Query: 466  LGCLQLPYNA 475
            L   +  ++A
Sbjct: 1028 LSVREQQFHA 1037



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/428 (22%), Positives = 181/428 (42%), Gaps = 50/428 (11%)

Query: 43   ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNML 98
            E + L ++M RKG +     Y      +CKS   + +A   F  +      P L  +  L
Sbjct: 616  ESLSLFDEMVRKGCVADVSTYSLVINCLCKSDD-VDQALDVFGRMKEEGMEPLLGNYKTL 674

Query: 99   MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--------ENV 150
            +S     +  + A Q+   +QE+ L  D  +Y  ++    KS +VD           +N+
Sbjct: 675  LSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNI 734

Query: 151  KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
             PD   + +L+   G+SG ++ AF++  +M  E H  +PD +   +LM      G++  A
Sbjct: 735  LPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGH--EPDVVAYTSLMDVLGKGGKLSHA 792

Query: 211  REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
              +++ + K         Y+  I+   + G  E A   +++   KG  P+    S+LID 
Sbjct: 793  LIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDS 852

Query: 271  AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----- 325
             G  G V+ A E+ +E + +     I++Y++L+   + A     A +L E M+ +     
Sbjct: 853  FGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPD 912

Query: 326  -------------------------KLK-----PTVSTMNALITALCDGDQLPKTMEVLS 355
                                     ++K     P V T  +LI +L   D+L +  E+  
Sbjct: 913  LVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFD 972

Query: 356  DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 415
             M+  G  P+ +TY++L+    R   V    M+  + K  G +P+ +    +  + S R 
Sbjct: 973  SMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPDGITIGIMKRILSVRE 1032

Query: 416  EKARTLNE 423
            ++   L E
Sbjct: 1033 QQFHALEE 1040



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/423 (22%), Positives = 184/423 (43%), Gaps = 49/423 (11%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +HS+NR    GR+    + +++M + G+      +      + KS   I EA +FF  + 
Sbjct: 294 VHSFNR---SGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGN-IDEACKFFNGMK 349

Query: 89  N----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           N    P + T+  L++  A +   E A +V   ++E     D   Y TLI    K+G+ D
Sbjct: 350 NLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEAD 409

Query: 145 ---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
               +F+ +K     P+   +N +I+  G++G    A+ +  ++  +     PD  T   
Sbjct: 410 MACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQ--GAVPDVFTYNT 467

Query: 197 LMKACANAGQVDRAREVYKMI----------------HKYNIKGTPEV------------ 228
           L+      GQ+D+   + K +                H+  I+G                
Sbjct: 468 LIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLG 527

Query: 229 ---YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
              Y   ++     G  + A  + + M K   IP  V  + L+D  G AG+++ A  +L+
Sbjct: 528 EITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLR 587

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           E + QG    +++YSSLM +       +++L L++ M        VST + +I  LC  D
Sbjct: 588 EMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSD 647

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
            + + ++V   MK  G+ P    Y  LL +  + + ++  L + ++ +E  ++P+  ++ 
Sbjct: 648 DVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYN 707

Query: 406 CII 408
            ++
Sbjct: 708 IMV 710



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/314 (21%), Positives = 139/314 (44%), Gaps = 10/314 (3%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
           T+ T+ +++   A +++++   Q+L  + + G +    L T+L+ T   +  V    E  
Sbjct: 181 TVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLLRTFGSTNNVSGALEIF 240

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                    P   ++N ++    + G    A  V  ++      + PD  T    + +  
Sbjct: 241 NQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQ--FRIQPDAQTFRIFVHSFN 298

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            +G++D A E  + + K  I      +T+ I+   ++G+ + AC  ++ M      P+ V
Sbjct: 299 RSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVV 358

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L++    AG++E A E+  E K    S   I+Y++L+     A     A  L++ M
Sbjct: 359 TYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEM 418

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           K   L P + T N +I+ L    + P+  ++  D+K  G  P+  TY+ L+    +   +
Sbjct: 419 KDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQM 478

Query: 383 EVGLMLLSQAKEDG 396
           +  L ++ +  E G
Sbjct: 479 DKVLAIIKEMVEKG 492



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/257 (20%), Positives = 112/257 (43%), Gaps = 2/257 (0%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +  +I     +   D    +L  M  E H +    +T  +L++   +   V  A E++  
Sbjct: 185 YTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLT--SLLRTFGSTNNVSGALEIFNQ 242

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           +  +    +  +Y   +    + G +  A  V+  + +  + PD       +     +G+
Sbjct: 243 MKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGR 302

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           ++ A E +QE    GI  G+ +++ L+ A   + N  +A + +  MK+++  P V T   
Sbjct: 303 LDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTT 362

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           L+  L    +L +  EV  +MK     P+ I Y+ L+    +  + ++   L  + K+ G
Sbjct: 363 LVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRG 422

Query: 397 VIPNLVMFKCIIGMCSR 413
           ++PNL  +  +I +  +
Sbjct: 423 LVPNLRTYNIMISVLGK 439


>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 161/337 (47%), Gaps = 12/337 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--------VDA 145
            ++ ++S    S     A +V + +++AG K +   Y T+I  C K G          D 
Sbjct: 237 AYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDE 296

Query: 146 MF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           M  E V+PDR+ FN+LI  C + G  + +  V AEM  +   ++ D  T   L+ A    
Sbjct: 297 MQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEM--QRRGIEQDIFTFNTLIDAVCKG 354

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           GQ++ A  +   +   NI      Y+  I+   + G +E A S+Y DM + GV PD V  
Sbjct: 355 GQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSY 414

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + LID     G+ + A    ++ +  G+   +++Y++L+ A      ++ A  L++ MK 
Sbjct: 415 NTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKG 474

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             L P V T +ALI +            V ++ K  GL P+ + YS L+ +C +   VE 
Sbjct: 475 EGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVED 534

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
            ++LL +  + G+ PN+V +  +I     RY +A  L
Sbjct: 535 AVVLLQEMTQAGIQPNIVTYNSLIDAYG-RYGQADKL 570



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 178/422 (42%), Gaps = 59/422 (13%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +++Y+ ++    R GR  E + + + M++ G       Y+       K    +K+A   F
Sbjct: 235 VYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIF 294

Query: 85  ----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
               K    P   TFN L++VC+     E + +V   +Q  G++ D   + TLI    K 
Sbjct: 295 DEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKG 354

Query: 141 GKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+++           +N+ P+ V ++ +I   G+ G  + A  +  +M      V PD +
Sbjct: 355 GQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMKES--GVRPDRV 412

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +   L+   A  G+ D A    K + +  +K     Y   I+   + G ++ A  ++D M
Sbjct: 413 SYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDAYGKQGKYKDAACLFDKM 472

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             +G++P+ +  SALID    AG  +    +  E K  G+   ++ YSSL+ +C      
Sbjct: 473 KGEGLVPNVLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLV 532

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK------------------TMEVL 354
           + A+ L + M    ++P + T N+LI A     Q  K                  +MEV+
Sbjct: 533 EDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSVQKIGERSMEVV 592

Query: 355 -----------------------SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
                                   +M+  GL PN +T+S +L AC R   ++   +LL Q
Sbjct: 593 RKPPPSQQNASDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCASLQEASVLLEQ 652

Query: 392 AK 393
            +
Sbjct: 653 MR 654



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 109/215 (50%), Gaps = 3/215 (1%)

Query: 197 LMKACANAGQVDRAREVYK-MIHKYNIKGT-PEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           L++   N G+ +RA + Y+ M+ + +++    ++ +I I+   + G  E A  V++   K
Sbjct: 169 LLRELGNRGEWERALQGYEWMVQQVHLRSEWSKLASIMISTLGRLGKVEIALDVFNRAQK 228

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQ 313
            G   +    SA++   G +G+   A ++ Q  K  G    +I+Y++++ AC     + +
Sbjct: 229 AGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLK 288

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +AL++++ M+   ++P   T N+LI     G     +  V ++M+  G+  +  T++ L+
Sbjct: 289 QALDIFDEMQKEGVEPDRITFNSLIAVCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLI 348

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            A  +   +E+   +++  +   + PN+V +  +I
Sbjct: 349 DAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMI 383



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 131/321 (40%), Gaps = 66/321 (20%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           SYN LI    + GR  + +   +DMER GL   D V +    +    Q   K+A   F  
Sbjct: 413 SYNTLIDIYAKLGRFDDALIACKDMERVGL-KADVVTYNALIDAYGKQGKYKDAACLFDK 471

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                LVPN  + T++ L+   + +   +    V    + AGLK D  LY++LI +C K 
Sbjct: 472 MKGEGLVPN--VLTYSALIDSYSKAGMHQDVSNVFTEFKRAGLKPDVVLYSSLIDSCCKC 529

Query: 141 GKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM------------ 180
           G V DA+          ++P+ V +N+LI A G+ G  D+   V A M            
Sbjct: 530 GLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRYGQADKLEAVKANMPNSVQKIGERSM 589

Query: 181 -----------NAEVHP----------------VDPDHITIGALMKACANAGQVDRAREV 213
                      NA  H                 + P+ +T  A++ AC+    +  A  +
Sbjct: 590 EVVRKPPPSQQNASDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCASLQEASVL 649

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            + +  ++      VY IA        +  W  A  ++D++++        F +AL D  
Sbjct: 650 LEQMRFFD----GWVYGIAHGLLMGLREQVWVEAQRLFDEISRMDYATGAAFYNALTDVL 705

Query: 272 GHAGKVEAAFEILQEAKNQGI 292
            H G+ + A E++  AK + +
Sbjct: 706 WHFGQRQGAQEVVVAAKRRQV 726



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVSTMNA-LITALCDGDQLPKTM 351
           VG+  +  L+    N   W++AL+ YE M + + L+   S + + +I+ L    ++   +
Sbjct: 161 VGLEDFPYLLRELGNRGEWERALQGYEWMVQQVHLRSEWSKLASIMISTLGRLGKVEIAL 220

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           +V +  +  G   N   YS ++ A  R       L +    K+ G  PNL+ +  II  C
Sbjct: 221 DVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDAC 280

Query: 412 SR 413
            +
Sbjct: 281 GK 282


>gi|302829725|ref|XP_002946429.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
 gi|300268175|gb|EFJ52356.1| hypothetical protein VOLCADRAFT_103021 [Volvox carteri f.
           nagariensis]
          Length = 961

 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/367 (28%), Positives = 155/367 (42%), Gaps = 35/367 (9%)

Query: 50  DMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109
           D  ++GL  +D    A        Q  +K A   F  + N  L   + L S+C       
Sbjct: 224 DAIKQGLYYLDSSAMAALLKELAKQGYLKRAVEIFDWLRN--LEPSHELSSLC------- 274

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRV--------VFNALI 161
                           D   YTT+I+ C    ++    E V   R          ++AL+
Sbjct: 275 ----------------DLYTYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALM 318

Query: 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
             C ++  +D A DV  +M  E     P+ +T   L+       Q + A +V   + K  
Sbjct: 319 NVCIKANELDLAQDVYKQMLEE--GCSPNLVTYNILIDVYVKRCQWEEAVKVLDTLEKQA 376

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           I+     Y   I+ C+++G  E A  VY+ M   GV P     +ALI   G  G+VE A 
Sbjct: 377 IQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKAL 436

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           EI ++   +G    +I+YSSL+ AC  A  W+ ALEL+  M     KP V T N+LI A 
Sbjct: 437 EIFRDMIRRGCERNVITYSSLISACEKAGRWEMALELFSKMHKENCKPNVVTFNSLIAAC 496

Query: 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
             G    K  E+   M++ G  P++ITY  L+ A ER       L    Q +  G  P+ 
Sbjct: 497 SHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQTQGCHPDA 556

Query: 402 VMFKCII 408
            +F  ++
Sbjct: 557 AVFNSLM 563



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 136/280 (48%), Gaps = 8/280 (2%)

Query: 153 DRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDP--DHITIGALMKACANAGQV 207
           D     AL+    + G + RA   FD L  +    H +    D  T   ++  C +  Q+
Sbjct: 234 DSSAMAALLKELAKQGYLKRAVEIFDWLRNLEPS-HELSSLCDLYTYTTMISQCGSHQQL 292

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
            RA E+   +    I      Y+  +N C +  + + A  VY  M ++G  P+ V  + L
Sbjct: 293 RRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQMLEEGCSPNLVTYNIL 352

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ID      + E A ++L   + Q I   + +Y++++ AC+ +   ++AL++YE M +  +
Sbjct: 353 IDVYVKRCQWEEAVKVLDTLEKQAIQAEVRTYNTVISACNKSGQPEQALKVYEKMLAAGV 412

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           KP+ +T  ALI+A     Q+ K +E+  DM   G   N ITYS L+ ACE+    E+ L 
Sbjct: 413 KPSATTYTALISAYGKKGQVEKALEIFRDMIRRGCERNVITYSSLISACEKAGRWEMALE 472

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 425
           L S+  ++   PN+V F  +I  CS    +EKA  L E +
Sbjct: 473 LFSKMHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQM 512



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 17/156 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LI    ++G++ + +++  DM R+G  + + + ++   + C+     + A   F  
Sbjct: 418 TYTALISAYGKKGQVEKALEIFRDMIRRGC-ERNVITYSSLISACEKAGRWEMALELFSK 476

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141
           +      P + TFN L++ C+     E A ++   +Q  G K D   Y  LIT   + G 
Sbjct: 477 MHKENCKPNVVTFNSLIAACSHGGHWEKASELFEQMQTQGCKPDSITYCGLITAYERGGQ 536

Query: 142 --KVDAMFENVK-----PDRVVFNALITACGQSGAV 170
             +    FE ++     PD  VFN+L+    QSG +
Sbjct: 537 WRRALKAFEQMQTQGCHPDAAVFNSLMEVLWQSGVL 572


>gi|299116347|emb|CBN76149.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 193/436 (44%), Gaps = 45/436 (10%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT---------------C 137
           S+F  ++S C+ +     A  VLR +  AG+  +   + T++                  
Sbjct: 494 SSFMAVLSACSKAGRWGSALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGGSSSGGGA 553

Query: 138 AKSGK----------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE--VH 185
           AK              D     V+PD V +N+LI      G  DRA ++L  MNA+    
Sbjct: 554 AKREAPRWPMALELLADMERRGVEPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAG 613

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            V PD IT  + + ACA+ G+  +A ++   + +  +K     YT AI+ CS+ G+ E A
Sbjct: 614 GVRPDVITYNSAIAACASGGESKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPEEA 673

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +   M    V+PD + ++A +D     GK   A  IL E +++G++    +Y + + A
Sbjct: 674 LRLLRAMEASNVVPDVIAMTACMDALAAGGKWSEAITILDEMRSKGVTPNERTYKAAIQA 733

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS----LG 361
           C     WQ+ALEL   +++     TV   N  + A   G +  + + +L  MK+    + 
Sbjct: 734 CGRGGQWQRALELLSRLENRASGATVQEYNCAMMACVTGGESGRALALLEQMKANKGGVN 793

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG--VIPNLVMFKCIIGMC--SRRYEK 417
             P+ +TY+  ++AC      +  L LL + +E G    PN+  +   I  C  +R++E+
Sbjct: 794 AGPDMVTYTSAIMACSSTGKWDRALSLLDEMREAGPRTQPNIRSYTAAIAACGRARKWEE 853

Query: 418 ARTLNEHVL---------SFNSG-RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLG 467
           A  L+  +L         SFN+  R         L++ +    + AG  P    V +++ 
Sbjct: 854 AVALHSKLLEEGMSPDPASFNAVIRAARRGGQHKLSMKLLASMVEAGLTPDGVTVGELIS 913

Query: 468 CLQLPYNADIRERLVE 483
            L      D  +R+VE
Sbjct: 914 SLSDRGRWDDAQRVVE 929



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 172/382 (45%), Gaps = 25/382 (6%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--------NPT 91
           R    ++LL DMER+G+ + D V +    NV +       A      +          P 
Sbjct: 560 RWPMALELLADMERRGV-EPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAGGVRPD 618

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
           + T+N  ++ CAS  +S+ A Q++  ++  GLK D   YT+ I  C+K+G  +       
Sbjct: 619 VITYNSAIAACASGGESKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPEEALRLLR 678

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                NV PD +   A + A    G    A  +L EM ++   V P+  T  A ++AC  
Sbjct: 679 AMEASNVVPDVIAMTACMDALAAGGKWSEAITILDEMRSK--GVTPNERTYKAAIQACGR 736

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM-TKKGVI---P 259
            GQ  RA E+   +       T + Y  A+  C   G+   A ++ + M   KG +   P
Sbjct: 737 GGQWQRALELLSRLENRASGATVQEYNCAMMACVTGGESGRALALLEQMKANKGGVNAGP 796

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQKALE 317
           D V  ++ I      GK + A  +L E +  G      I SY++ + AC  A+ W++A+ 
Sbjct: 797 DMVTYTSAIMACSSTGKWDRALSLLDEMREAGPRTQPNIRSYTAAIAACGRARKWEEAVA 856

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L+  +    + P  ++ NA+I A   G Q   +M++L+ M   GL P+ +T   L+ +  
Sbjct: 857 LHSKLLEEGMSPDPASFNAVIRAARRGGQHKLSMKLLASMVEAGLTPDGVTVGELISSLS 916

Query: 378 RKDDVEVGLMLLSQAKEDGVIP 399
            +   +    ++  A++ G IP
Sbjct: 917 DRGRWDDAQRVVEIAEKTGAIP 938



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 154/372 (41%), Gaps = 76/372 (20%)

Query: 112 FQVLRLVQEAGLKADCKLYTTLITTCAKS----GKVDAMFENV----KPDRVVFNALITA 163
            Q +  VQ+AGL AD ++ +  +  C+K+    G V  M + +    KPD  +F   I A
Sbjct: 325 VQTMSAVQQAGLVADIEMLSAAMDACSKARDTEGAVHFMDQAIRLGLKPDDTMFREAILA 384

Query: 164 CGQSGAVDRAFDVLAEMNAEV-HPVD----------------------PDHITIGALMKA 200
              +G    A D+  +   +   P                        P  +   A++KA
Sbjct: 385 YSLAGKWVEARDLALQWRGQAPSPASSSTPGGDGGGAVSVGLGISRPPPPTVCNTAILKA 444

Query: 201 CANAGQVDRA----REVYKMI---------------HKYNIKG----TPEVYTIAINCCS 237
              AG+VD A     + Y                   + +++G        +   ++ CS
Sbjct: 445 MGKAGKVDEAIAWLGDTYDAATATATAASGAGTTEDEQGSVRGFVCLDHSSFMAVLSACS 504

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH------------AGKVEA-----A 280
           + G W  A SV  +M + GV P+ V  + ++    H            A K EA     A
Sbjct: 505 KAGRWGSALSVLREMDRAGVTPETVAFNTVLAAFEHRAHSGGSSSGGGAAKREAPRWPMA 564

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPTVSTMNA 336
            E+L + + +G+   +++Y+SL+          +ALE+ + M +      ++P V T N+
Sbjct: 565 LELLADMERRGVEPDVVTYNSLINVLRWGGQRDRALEILDGMNAKGGAGGVRPDVITYNS 624

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
            I A   G +  K  +++ +M+  GL P+  +Y+  + AC +  + E  L LL   +   
Sbjct: 625 AIAACASGGESKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPEEALRLLRAMEASN 684

Query: 397 VIPNLV-MFKCI 407
           V+P+++ M  C+
Sbjct: 685 VVPDVIAMTACM 696


>gi|384249299|gb|EIE22781.1| hypothetical protein COCSUDRAFT_47692 [Coccomyxa subellipsoidea
           C-169]
          Length = 1226

 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 144/277 (51%), Gaps = 6/277 (2%)

Query: 153 DRVVFNALITACGQSGAVDRA---FD-VLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           D     AL+    ++G   RA   FD VLA  ++       D  T  A +  C +A Q++
Sbjct: 94  DSRACAALLKELARTGLAHRAQEFFDHVLALGDSTEAARLADVYTYTAAISICVSAQQLE 153

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
           RA E+   + +  ++     ++  +N C + G  + A  V++DM + G++P+ V  + LI
Sbjct: 154 RALELSADMQRRGVQRNVHTHSALMNVCIKCGQLKLALDVWEDMQRDGIVPNVVTYNTLI 213

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           D  G  G+ E A ++L+  K QGI     +Y++LM AC+ +  WQ AL+LYE M++    
Sbjct: 214 DVYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMIACNTSGQWQTALQLYEEMRAAGHA 273

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
              ++ NALI+A      LP+ ++    M   G   + ITYS L+ ACE+  + ++ L  
Sbjct: 274 LNTTSYNALISAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSGEWQLALRF 333

Query: 389 LSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNE 423
             +  +D   PN++ F  +I  C++  ++EKAR L E
Sbjct: 334 FDECLKDNCRPNVITFNSLITACAQGAQWEKARELFE 370



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 157/365 (43%), Gaps = 39/365 (10%)

Query: 44  CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           C  LL+++ R GL    +     FF+   +     EA R   +       T+   +S+C 
Sbjct: 98  CAALLKELARTGLAHRAQ----EFFDHVLALGDSTEAARLADVY------TYTAAISICV 147

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITA 163
           S++  E A ++   +Q  G++ +   ++ L+  C K                        
Sbjct: 148 SAQQLERALELSADMQRRGVQRNVHTHSALMNVCIK------------------------ 183

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
           CGQ   +  A DV  +M  +   + P+ +T   L+      GQ ++A +V + +    I+
Sbjct: 184 CGQ---LKLALDVWEDMQRDG--IVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIE 238

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                Y   +  C+ +G W+ A  +Y++M   G   +    +ALI     AG +    + 
Sbjct: 239 PVTRTYNTLMIACNTSGQWQTALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVLDT 298

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
            ++   QG    +I+YSSL+ AC  +  WQ AL  ++       +P V T N+LITA   
Sbjct: 299 YRQMVQQGCERSVITYSSLISACEKSGEWQLALRFFDECLKDNCRPNVITFNSLITACAQ 358

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
           G Q  K  E+   M+  G  P+ +TY+ L+ A ER    ++ L      +  G  P+ ++
Sbjct: 359 GAQWEKARELFELMQQQGCTPDVVTYTALISAYERGGKWQLALQAFQAMQAKGCKPDSIV 418

Query: 404 FKCII 408
           +  II
Sbjct: 419 YNAII 423



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 140/310 (45%), Gaps = 38/310 (12%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVPNPTLS 93
           ++   ++L  DM+R+G+   +   H+   NVC     +K A   ++      +VPN  + 
Sbjct: 151 QLERALELSADMQRRGV-QRNVHTHSALMNVCIKCGQLKLALDVWEDMQRDGIVPN--VV 207

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPD 153
           T+N L+ V       E A QVLR ++                           F+ ++P 
Sbjct: 208 TYNTLIDVYGKLGQWEQALQVLRRMK---------------------------FQGIEPV 240

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
              +N L+ AC  SG    A  +  EM A  H ++    +  AL+ A + AG + +  + 
Sbjct: 241 TRTYNTLMIACNTSGQWQTALQLYEEMRAAGHALNT--TSYNALISAHSKAGDLPQVLDT 298

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           Y+ + +   + +   Y+  I+ C ++G+W+ A   +D+  K    P+ +  ++LI     
Sbjct: 299 YRQMVQQGCERSVITYSSLISACEKSGEWQLALRFFDECLKDNCRPNVITFNSLITACAQ 358

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
             + E A E+ +  + QG +  +++Y++L+ A      WQ AL+ ++ M++   KP    
Sbjct: 359 GAQWEKARELFELMQQQGCTPDVVTYTALISAYERGGKWQLALQAFQAMQAKGCKPDSIV 418

Query: 334 MNALITALCD 343
            NA+I  L D
Sbjct: 419 YNAIIDTLWD 428



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/273 (23%), Positives = 118/273 (43%), Gaps = 17/273 (6%)

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           D T+   + D    +A I     A ++E A E+  + + +G+   + ++S+LM  C    
Sbjct: 126 DSTEAARLADVYTYTAAISICVSAQQLERALELSADMQRRGVQRNVHTHSALMNVCIKCG 185

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             + AL+++E M+   + P V T N LI       Q  + ++VL  MK  G+ P T TY+
Sbjct: 186 QLKLALDVWEDMQRDGIVPNVVTYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYN 245

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH------ 424
            L++AC      +  L L  + +  G   N   +  +I   S+  +  + L+ +      
Sbjct: 246 TLMIACNTSGQWQTALQLYEEMRAAGHALNTTSYNALISAHSKAGDLPQVLDTYRQMVQQ 305

Query: 425 -----VLSFNSGRPQIE--NKWTSLALMVYREAIVAGTIPTVEVV-SKVLGCLQLPYNAD 476
                V++++S     E   +W  LAL  + E +     P V    S +  C Q      
Sbjct: 306 GCERSVITYSSLISACEKSGEW-QLALRFFDECLKDNCRPNVITFNSLITACAQGAQWEK 364

Query: 477 IRE--RLVENLGVSADALKRSNLCSLIDGFGEY 507
            RE   L++  G + D +  + L S  +  G++
Sbjct: 365 ARELFELMQQQGCTPDVVTYTALISAYERGGKW 397



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 101/226 (44%), Gaps = 19/226 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + G+  + + +L  M+ +G+  + + Y+      C +    + A + ++ 
Sbjct: 208 TYNTLIDVYGKLGQWEQALQVLRRMKFQGIEPVTRTYNTLMI-ACNTSGQWQTALQLYEE 266

Query: 87  VPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +         +++N L+S  + + D        R + + G +     Y++LI+ C KSG+
Sbjct: 267 MRAAGHALNTTSYNALISAHSKAGDLPQVLDTYRQMVQQGCERSVITYSSLISACEKSGE 326

Query: 143 V--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
                    + + +N +P+ + FN+LITAC Q    ++A ++   M  +     PD +T 
Sbjct: 327 WQLALRFFDECLKDNCRPNVITFNSLITACAQGAQWEKARELFELMQQQG--CTPDVVTY 384

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
            AL+ A    G+   A + ++ +     K    VY   I+    TG
Sbjct: 385 TALISAYERGGKWQLALQAFQAMQAKGCKPDSIVYNAIIDTLWDTG 430


>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 871

 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 108/413 (26%), Positives = 184/413 (44%), Gaps = 25/413 (6%)

Query: 11  FPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA-RFFN 69
           FPY   +  N   +    L  Y  +++QG +      L  +    L  + KV  A   FN
Sbjct: 165 FPYLLRELGNRG-EWERALQGYEWMVQQGHLRSEWSKLASIMISTLGRLGKVEIALDVFN 223

Query: 70  VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
                +A K  F          +  ++ ++S    S     A +V + +++AG K +   
Sbjct: 224 -----RAQKAGF-------GNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLIT 271

Query: 130 YTTLITTCAKSG----KVDAMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
           Y T+I  C K G    K   +FE      V+PDR+ FN+LI  C +    + +  V AEM
Sbjct: 272 YNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEM 331

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
             +   ++ D  T   L+ A    GQ++ A  +   +   NI      Y+  I+   + G
Sbjct: 332 --QRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLG 389

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
            +E A  +Y DM + GV PD V  + LID     G+ + A    ++ +  G+   +++Y+
Sbjct: 390 CFEEAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYN 449

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           +L+ A      ++ A  L++ MK+  L P V T +ALI A            +  + K  
Sbjct: 450 ALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRA 509

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           GL P+ + YS L+ +C +   VE  ++LL +  + G+ PN+V +  +I    R
Sbjct: 510 GLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGR 562



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 186/427 (43%), Gaps = 27/427 (6%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +++Y+ ++    R GR  E + + + M++ G       Y+       K    +K+A   F
Sbjct: 234 VYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIF 293

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + +      P   TFN L++VC+     E + +V   +Q  G++ D   Y TLI    K 
Sbjct: 294 EEMQKEGVEPDRITFNSLIAVCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKG 353

Query: 141 GKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+++           +N+ P+ V ++ +I   G+ G  + A  +  +M      V PD +
Sbjct: 354 GQMELAASIMSSMRLKNISPNVVTYSTMIDGYGKLGCFEEAIGLYHDMKES--GVRPDRV 411

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +   L+   A  G+ D A    K + +  +K     Y   I+   + G ++ A  ++D M
Sbjct: 412 SYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKM 471

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             +G++P+ +  SALID    AG  + A  I  E K  G+   ++ YSSL+ +C      
Sbjct: 472 KAEGLVPNVLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLV 531

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM-----KSLGLCPNTI 367
           + A+ L + M    ++P + T N+LI A     Q+        +M       +G     I
Sbjct: 532 EDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVGDRSTEI 591

Query: 368 TYSILLVACERKDDVEV--GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNE 423
               L       D   V   + +  + ++ G+ PN+V F  I+  CSR    ++A  L E
Sbjct: 592 ICKTLTSQQNANDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCSSLQEASVLLE 651

Query: 424 HVLSFNS 430
            +  F+S
Sbjct: 652 QMRFFDS 658



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 136/322 (42%), Gaps = 67/322 (20%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           SYN LI    + GR  + +   +DMER GL   D V +    +    Q   K+A   F  
Sbjct: 412 SYNTLIDIYAKLGRFDDALTACKDMERVGL-KADVVTYNALIDAYGKQGKYKDAAGLFDK 470

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                LVPN  + T++ L+   + +   + A  +    + AGLK D  LY++LI +C K 
Sbjct: 471 MKAEGLVPN--VLTYSALIDAYSKAGMHQDATSIFVEFKRAGLKPDVVLYSSLIDSCCKC 528

Query: 141 GKV-DAMF-------ENVKPDRVVFNALITACGQSGAVD-------------------RA 173
           G V DA+          ++P+ V +N+LI A G++G VD                   R+
Sbjct: 529 GLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVGDRS 588

Query: 174 FDVL-----AEMNAEVHP----------------VDPDHITIGALMKACANAGQVDRARE 212
            +++     ++ NA  H                 + P+ +T  A++ AC+    +  A  
Sbjct: 589 TEIICKTLTSQQNANDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCSSLQEASV 648

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           + + +  ++      VY IA        +  W  A  ++D++ +        F +AL D 
Sbjct: 649 LLEQMRFFD----SWVYGIAHGLLMGLREHVWVEAQRLFDEIARMDYATGAAFYNALTDV 704

Query: 271 AGHAGKVEAAFEILQEAKNQGI 292
             H G+ + A E++  AK + +
Sbjct: 705 LWHFGQRQGAQEVVVAAKRRQV 726



 Score = 45.4 bits (106), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVSTMNA-LITALCDGDQLPKTM 351
           VG+  +  L+    N   W++AL+ YE M +   L+   S + + +I+ L    ++   +
Sbjct: 160 VGLEDFPYLLRELGNRGEWERALQGYEWMVQQGHLRSEWSKLASIMISTLGRLGKVEIAL 219

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           +V +  +  G   N   YS ++ A  R       L +    K+ G  PNL+ +  II  C
Sbjct: 220 DVFNRAQKAGFGNNVYAYSAMVSAYGRSGRCREALKVFQAMKKAGCKPNLITYNTIIDAC 279

Query: 412 SR 413
            +
Sbjct: 280 GK 281


>gi|225437600|ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 159/332 (47%), Gaps = 11/332 (3%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------- 142
           T+  F+ L+S    S   + A +V   ++ +GLK +   Y  +I  C K G         
Sbjct: 219 TVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAEI 278

Query: 143 VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M  N V+PDR+ FN+L+  CG+ G  + A ++ +EM      ++ D  T   L+ A 
Sbjct: 279 FDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEM--LYRGIEQDIFTYNTLLDAV 336

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              GQ+D A ++   + + +I      Y+  I+  ++ G  + A +++++M    +  D 
Sbjct: 337 CKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDR 396

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L+      G+ E A  + +E ++ GI    ++Y++L+G       +++   ++E 
Sbjct: 397 VSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEE 456

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK+ ++ P + T + LI     G    + MEV  + K  GL  + + YS L+ A  +   
Sbjct: 457 MKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGL 516

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           VE  +  L +  ++G+ PN+V +  II    R
Sbjct: 517 VESAVSFLDEMTKEGIRPNVVTYNSIIDAFGR 548



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 162/382 (42%), Gaps = 31/382 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N L+    R G      +L  +M  +G+      Y+     VCK  + +  AF+    
Sbjct: 293 TFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQ-MDLAFQIMSE 351

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +P     P + T++ ++   A +   + A  +   ++ A +  D   Y TL++  AK G+
Sbjct: 352 MPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGR 411

Query: 143 VDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
            +             +K D V +NAL+   G+ G  +    V  EM AE   + P+ +T 
Sbjct: 412 FEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAE--RIFPNLLTY 469

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+   +  G    A EV++   K  +K    +Y+  I+   + G  E A S  D+MTK
Sbjct: 470 STLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTK 529

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQE---AKNQGISVGIISYSSLMGACSNAKN 311
           +G+ P+ V  +++ID  G +G  E   +   E   +K    S+ ++  ++         N
Sbjct: 530 EGIRPNVVTYNSIIDAFGRSGSAECVIDPPYETNVSKMSSSSLKVVEDATESEVGDKEDN 589

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             + ++++  + + K              LC        + V   M  L + PN +T+S 
Sbjct: 590 --QIIKIFGQLAAEKTCHAKKENRGRQEILC-------ILAVFHKMHELDIKPNVVTFSA 640

Query: 372 LLVACERKDDVEVGLMLLSQAK 393
           +L AC R +  E   MLL + +
Sbjct: 641 ILNACSRCNSFEDASMLLEELR 662



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 108/226 (47%), Gaps = 3/226 (1%)

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           A++      GQV+ A+ V++         T   ++  I+   ++G  + A  V++ M   
Sbjct: 190 AMISILGRLGQVELAKNVFETALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSS 249

Query: 256 GVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           G+ P+ V  +A+ID  G  G     A EI  E    G+    I+++SL+  C     W+ 
Sbjct: 250 GLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEA 309

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A  L+  M    ++  + T N L+ A+C G Q+    +++S+M    + PN +TYS ++ 
Sbjct: 310 ARNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVID 369

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
              +   ++  L L ++ K   +  + V +  ++ + ++  R+E+A
Sbjct: 370 GYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEA 415



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 3/183 (1%)

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV--FLSALIDFAGHAGKVEAAFEILQE 286
           YT  +      G+W  A   ++   ++    +E     SA+I   G  G+VE A  + + 
Sbjct: 151 YTFLLRELGNRGEWAKAIRCFEFAVRREQRRNEQGKLASAMISILGRLGQVELAKNVFET 210

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD- 345
           A N+G    + ++S+L+ A   +    +A++++E MKS  LKP + T NA+I A   G  
Sbjct: 211 ALNEGYGNTVYAFSALISAYGRSGYCDEAIKVFETMKSSGLKPNLVTYNAVIDACGKGGV 270

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
              +  E+  +M   G+ P+ IT++ LL  C R    E    L S+    G+  ++  + 
Sbjct: 271 DFNRAAEIFDEMLRNGVQPDRITFNSLLAVCGRGGLWEAARNLFSEMLYRGIEQDIFTYN 330

Query: 406 CII 408
            ++
Sbjct: 331 TLL 333


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 190/408 (46%), Gaps = 33/408 (8%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK---SQKAIKEA 80
           V + LH +++L+ QG                   +++V +A   N VCK   ++ AIK  
Sbjct: 393 VKKALHFHDKLLAQG-----------------FQLNQVSYATLINGVCKIGDTRGAIKLL 435

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +    +  P +  ++ ++      +    A+ +   +   G+ AD   Y+TLI      
Sbjct: 436 RKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIV 495

Query: 141 GKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           GK+        + + + + PD   +  L+ A G+ G V  A  VLA M      V PD  
Sbjct: 496 GKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKAC--VKPDVF 553

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   LM       +V +A+ V+  +    +      YTI IN   ++   + A +++ +M
Sbjct: 554 TYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEM 613

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKN 311
            +K ++PD V  S+L+D    +G++   ++++ E +++G    +I+Y+SL+ G C N  +
Sbjct: 614 HQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNG-H 672

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             KA+ L+  MK   ++P   T   L+  LC G +L    EV  D+ + G   +   Y++
Sbjct: 673 LDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNV 732

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
           ++    ++  +E  L +LS+ +E+G IPN V F  II    ++ E  +
Sbjct: 733 MIYGHCKQGLLEEALTMLSKMEENGCIPNAVTFDIIINALFKKDENDK 780



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 158/362 (43%), Gaps = 28/362 (7%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN +I    +   +SE   L  +M  KG+      Y    +  C   K +KEA     ++
Sbjct: 136 YNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGK-LKEALGLLNVM 194

Query: 88  P----NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL------ITT 136
                NP + T+N+L+ ++C   K  E A  VL ++ +A +K++   Y+TL      +  
Sbjct: 195 VLKTINPNVCTYNILVDALCKEGKVKE-AKSVLAVMLKACVKSNVITYSTLMDGYFLVYE 253

Query: 137 CAKSGKV-DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
             K+  V +AM    V PD   +N +I    +   VD+A ++  EM     P       I
Sbjct: 254 VKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFP------PI 307

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGT-PEVYT--IAINCCSQTGDWEFACSVYDD 251
               K   +  ++        + H+  +KG  P+++T  I INC    G   F  SV   
Sbjct: 308 IQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAK 367

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           + K+G  P  V L+ LI      G+V+ A     +   QG  +  +SY++L+       +
Sbjct: 368 ILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGD 427

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            + A++L   +     KP V   + +I ALC    + +   + S+M   G+  + +TYS 
Sbjct: 428 TRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYST 487

Query: 372 LL 373
           L+
Sbjct: 488 LI 489



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 160/384 (41%), Gaps = 33/384 (8%)

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
            + ++PD    N LI      G +   F VLA++    +P  P  +T+  L+K     GQ
Sbjct: 335 LKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYP--PSTVTLNTLIKGLCLKGQ 392

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           V +A   +  +     +     Y   IN   + GD   A  +   +  +   P+    S 
Sbjct: 393 VKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYST 452

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 325
           +ID       V  A+ +  E   +GIS  +++YS+L+ G C   K  ++A+ L   M   
Sbjct: 453 IIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGK-LKEAIGLLNEMVLK 511

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + P V T   L+ AL    ++ +   VL+ M    + P+  TY+ L+       +V+  
Sbjct: 512 TINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKA 571

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 444
             + +     GV P++  +  +I G C     K++ ++E +  F                
Sbjct: 572 QHVFNAMSLMGVTPDVHTYTILINGFC-----KSKMVDEALNLFKE-------------- 612

Query: 445 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
            ++++ +V  T+    +V  +    ++ Y  D+ + +  + G  AD +  +   SLIDG 
Sbjct: 613 -MHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEM-RDRGQPADVITYN---SLIDGL 667

Query: 505 ---GEYDPRAFSLLEEAASFGIVP 525
              G  D +A +L  +    GI P
Sbjct: 668 CKNGHLD-KAIALFNKMKDQGIRP 690



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 113/259 (43%), Gaps = 7/259 (2%)

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
           +  VL ++    +P  PD +T+  L+K     GQV  A   +  +     +     Y   
Sbjct: 47  SLSVLTKILKRGYP--PDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATL 104

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           IN   + GD   A      +  +   P+    + +ID       V  A+ +  E   +GI
Sbjct: 105 INGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGI 164

Query: 293 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           S  +++YS+L+ G C   K  ++AL L   M    + P V T N L+ ALC   ++ +  
Sbjct: 165 SANVVTYSTLIYGFCIVGK-LKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAK 223

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
            VL+ M    +  N ITYS L+       +V+    + +     GV P++  +  +I G 
Sbjct: 224 SVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGF 283

Query: 411 CS-RRYEKARTL-NEHVLS 427
           C  +R +KA  L  E +LS
Sbjct: 284 CKIKRVDKALNLFKEMILS 302



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 102/501 (20%), Positives = 202/501 (40%), Gaps = 46/501 (9%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P  T++   ++  +C   +  E      +L+ + G + +   Y TLI    + G   A  
Sbjct: 60  PPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQ-GFQLNQVSYATLINGVCRIGDTRAAI 118

Query: 148 ENV--------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           + +        KP+  ++N +I A  +   V  A+ + +EM   V  +  + +T   L+ 
Sbjct: 119 KFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMT--VKGISANVVTYSTLIY 176

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G++  A  +  ++    I      Y I ++   + G  + A SV   M K  V  
Sbjct: 177 GFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKS 236

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + +  S L+D      +V+ A  +       G++  + SY+ ++      K   KAL L+
Sbjct: 237 NVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLF 296

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M   +  P +   N ++ +          + +   ++  G+ P+  T +IL+      
Sbjct: 297 KEMILSRFPPIIQ-FNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHM 355

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIEN 437
             +  G  +L++  + G  P+ V    +I G+C + + +KA   ++ +L+      Q+  
Sbjct: 356 GQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQV-- 413

Query: 438 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL------------ 485
              S A ++     +  T   ++++ K+ G L  P N ++   +++ L            
Sbjct: 414 ---SYATLINGVCKIGDTRGAIKLLRKIDGRLTKP-NVEMYSTIIDALCKYQLVSEAYGL 469

Query: 486 -------GVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVPCVSFKEIPVV 535
                  G+SAD +  S   +LI GF   G+    A  LL E     I P V    I V 
Sbjct: 470 FSEMTVKGISADVVTYS---TLIYGFCIVGKLK-EAIGLLNEMVLKTINPDVRTYTILVD 525

Query: 536 VDARKLEIHTAKVYLLTILKG 556
              ++ ++  AK  L  +LK 
Sbjct: 526 ALGKEGKVKEAKSVLAVMLKA 546



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%)

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           Q  D   + SV   + K+G  PD V L+ LI      G+V+ A     +   QG  +  +
Sbjct: 40  QNVDDAVSLSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQV 99

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           SY++L+       + + A++    +     KP V   N +I ALC    + +   + S+M
Sbjct: 100 SYATLINGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEM 159

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              G+  N +TYS L+        ++  L LL+      + PN+  +  ++
Sbjct: 160 TVKGISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILV 210


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 184/398 (46%), Gaps = 33/398 (8%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFR 82
           +V + LH +++++ QG                   MD V +    N +CK  +  + A +
Sbjct: 95  EVKKSLHFHDKVVAQG-----------------FQMDHVSYGTLLNGLCKIGET-RCAVK 136

Query: 83  FFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             +++ +    P +  +N ++      K    A+ +   +   G+  D   YTTLI    
Sbjct: 137 LLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFC 196

Query: 139 KSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
             G++   F        +N+ P   ++N LI A  + G V  A ++LA M  E   + P 
Sbjct: 197 LLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKE--GIKPG 254

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +T   LM      G+V  A++++  + +  +      Y I IN   +    + A ++  
Sbjct: 255 VVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLR 314

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M  K ++PD V  ++LID    +G++ +A  ++ E  ++G    +++Y+SL+ A    +
Sbjct: 315 EMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQ 374

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
           N  KA  L+  MK   ++PT+ T  ALI  LC G +L    E+   +   G C +  TY+
Sbjct: 375 NLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYT 434

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +++    ++   +  L + S+ +++G IPN V F+ II
Sbjct: 435 VMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIII 472



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 157/366 (42%), Gaps = 20/366 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P +  FN ++   A  K    A  + + ++  G++A+      LI      G++   F  
Sbjct: 8   PPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSV 67

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                    +PD +  N L+      G V ++     ++ A+      DH++ G L+   
Sbjct: 68  LGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQ--GFQMDHVSYGTLLNGL 125

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+   A ++ +MI   + +    +Y   I+   +      A  +Y +M  +G+ PD 
Sbjct: 126 CKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDA 185

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + LI      G++  AF +L E   + I+ G+  Y+ L+ A     N ++A  L   
Sbjct: 186 ITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAV 245

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACER 378
           M    +KP V T + L+   C   ++    ++   M  +G+ PN  +Y+I+   L  C+R
Sbjct: 246 MTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKR 305

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIE 436
            D+    + LL +     ++P+ V +  +I G+C S R   A  L   +   + G+P   
Sbjct: 306 VDE---AMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEM--HHRGQPADV 360

Query: 437 NKWTSL 442
             +TSL
Sbjct: 361 VTYTSL 366



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 153/351 (43%), Gaps = 27/351 (7%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN +I    +   ++E  DL  +M+ +G+      Y    +  C     + +    F L+
Sbjct: 153 YNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFC----LLGQLMGAFSLL 208

Query: 88  P-------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                   NP +  +N+L++      + + A  +L ++ + G+K     Y+TL+      
Sbjct: 209 DEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLV 268

Query: 141 GKVD-------AMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDH 191
           G+V        AM +  V P+   +N +I    +   VD A ++L EM   +H  + PD 
Sbjct: 269 GEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREM---LHKNMVPDT 325

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T  +L+     +G++  A  +   +H          YT  ++   +  + + A +++  
Sbjct: 326 VTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMK 385

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M ++G+ P     +ALID     G+++ A E+ Q    +G  + + +Y+ ++        
Sbjct: 386 MKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGM 445

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           + +AL +   M+     P   T   +I +L + D+  K  ++L +M + GL
Sbjct: 446 FDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 496



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 21/171 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + GRI+  ++L+ +M  +G       Y +    +CK+Q   K    F K+
Sbjct: 327 TYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKM 386

Query: 87  VP---NPTLSTFNMLMS-VCASS--KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                 PT+ T+  L+  +C     K+++  FQ L LV+  G   D   YT +I+   K 
Sbjct: 387 KERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHL-LVK--GCCIDVWTYTVMISGLCKE 443

Query: 141 GKVD-------AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           G  D        M +N   P+ V F  +I +  +    D+A  +L EM A+
Sbjct: 444 GMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAK 494


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 187/397 (47%), Gaps = 33/397 (8%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK---SQKAIKEA 80
           V + LH +++L+ QG                   +++V +A   N VCK   ++ AIK  
Sbjct: 145 VKKALHFHDKLLAQG-----------------FQLNQVSYATLINGVCKIGDTRAAIKFL 187

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +    +  P +  +N ++      +    A+ +   +   G+ AD   Y TLI      
Sbjct: 188 RKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIV 247

Query: 141 GKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           GK+        + + + + P+   +N L+ A  + G V  A  VLA M      V PD I
Sbjct: 248 GKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC--VKPDVI 305

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   LM       +V +A+ V+  +    +      YTI IN   +    + A +++ +M
Sbjct: 306 TYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEM 365

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKN 311
            +K ++P  V  S+LID    +G++   ++++ E +++G    +I+YSSL+ G C N  +
Sbjct: 366 HQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNG-H 424

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +A+ L+  MK  +++P + T   L+  LC G +L    EV  D+ + G   N  TY++
Sbjct: 425 LDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNV 484

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ++    ++  +E  L +LS+ +++G IPN   F+ II
Sbjct: 485 MINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETII 521



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 161/388 (41%), Gaps = 41/388 (10%)

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
            + ++PD +  N LI      G +   F VLA++    +P  PD +T+  L+K     GQ
Sbjct: 87  LKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYP--PDTVTLNTLIKGLCLKGQ 144

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           V +A   +  +     +     Y   IN   + GD   A      +  +   PD V  + 
Sbjct: 145 VKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNT 204

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 325
           +ID       V  A+ +  E   +GIS  +++Y++L+ G C   K  ++A+ L   M   
Sbjct: 205 IIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGK-LKEAIGLLNEMVLK 263

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + P V T N L+ ALC   ++ +   VL+ M    + P+ ITYS L+       +V+  
Sbjct: 264 TINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKA 323

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 444
             + +     GV P++  +  +I G C                        +NK    AL
Sbjct: 324 QHVFNAMSLMGVTPDVHTYTILINGFC------------------------KNKMVDEAL 359

Query: 445 MVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSL 500
            +++E      +P +   S ++  L    ++ Y  D+ + +  + G  AD +  S   SL
Sbjct: 360 NLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEM-RDRGQPADVITYS---SL 415

Query: 501 IDGF---GEYDPRAFSLLEEAASFGIVP 525
           IDG    G  D RA +L  +     I P
Sbjct: 416 IDGLCKNGHLD-RAIALFNKMKDQEIRP 442



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 41/210 (19%), Positives = 90/210 (42%), Gaps = 5/210 (2%)

Query: 222 IKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
           ++ TP +  +   ++  ++   +  A S+   +  KG+ PD + L+ LI+   H G++  
Sbjct: 53  MRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITF 112

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
            F +L +   +G     ++ ++L+         +KAL  ++ + +   +    +   LI 
Sbjct: 113 GFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLIN 172

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
            +C        ++ L  +      P+ + Y+ ++ A  +   V     L S+    G+  
Sbjct: 173 GVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISA 232

Query: 400 NLVMFKCII-GMC--SRRYEKARTLNEHVL 426
           ++V +  +I G C   +  E    LNE VL
Sbjct: 233 DVVTYNTLIYGFCIVGKLKEAIGLLNEMVL 262


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 188/397 (47%), Gaps = 33/397 (8%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK---SQKAIKEA 80
           V + LH +++L+ QG                   +++V +A   N VCK   ++ AIK  
Sbjct: 145 VKKALHFHDKLLAQG-----------------FQLNQVSYATLINGVCKIGDTRGAIKLL 187

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +    +  P +  ++ ++      +    A+ +   +   G+ AD   Y+TLI      
Sbjct: 188 RKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIE 247

Query: 141 GKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           GK+        + + + + P+   +N L+ A  + G V  A  VLA M      V PD I
Sbjct: 248 GKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC--VKPDVI 305

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   LM       +V +A+ V+  +    +      YTI IN   +    + A +++ +M
Sbjct: 306 TYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEM 365

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKN 311
            +K ++P  V  S+LID    +G++   ++++ E +++G    +I+YSSL+ G C N  +
Sbjct: 366 HQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNG-H 424

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +A+ L+  MK  +++P + T   L+  LC G +L    EV  D+ + G   N  TY++
Sbjct: 425 LDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNV 484

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ++    ++  +E  L +LS+ +++G IPN   F+ II
Sbjct: 485 MINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETII 521



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 162/388 (41%), Gaps = 41/388 (10%)

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
            + ++PD +  N LI      G +   F VLA++    +P  PD +T+  L+K     GQ
Sbjct: 87  LKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYP--PDTVTLNTLIKGLCLKGQ 144

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           V +A   +  +     +     Y   IN   + GD   A  +   +  +   P+    S 
Sbjct: 145 VKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYST 204

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 325
           +ID       V  A+ +  E   +GIS  +++YS+L+ G C   K  ++A+ L   M   
Sbjct: 205 IIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGK-LKEAIGLLNEMVLK 263

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + P V T N L+ ALC   ++ +   VL+ M    + P+ ITYS L+       +V+  
Sbjct: 264 TINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKA 323

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 444
             + +     GV P++  +  +I G C                        +NK    AL
Sbjct: 324 QHVFNAMSLMGVTPDVHTYTILINGFC------------------------KNKMVDEAL 359

Query: 445 MVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSL 500
            +++E      +P +   S ++  L    ++PY  D+ + +  + G  AD +  S   SL
Sbjct: 360 NLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEM-RDRGQPADVITYS---SL 415

Query: 501 IDGF---GEYDPRAFSLLEEAASFGIVP 525
           IDG    G  D RA +L  +     I P
Sbjct: 416 IDGLCKNGHLD-RAIALFNKMKDQEIRP 442



 Score = 46.2 bits (108), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 40/224 (17%), Positives = 90/224 (40%), Gaps = 37/224 (16%)

Query: 222 IKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
           ++ TP +  +   ++  ++   +  A S+   +  KG+ PD + L+ LI+   H G++  
Sbjct: 53  MRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITF 112

Query: 280 AFEILQEAKN-----------------------------------QGISVGIISYSSLMG 304
            F +L +                                      QG  +  +SY++L+ 
Sbjct: 113 GFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLIN 172

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                 + + A++L   +     KP V   + +I ALC    + +   + S+M   G+  
Sbjct: 173 GVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISA 232

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + +TYS L+     +  ++  + LL++     + PN+  +  ++
Sbjct: 233 DVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILV 276



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           II ++ ++ + +  K++  A+ L   ++   ++P + T+N LI   C   Q+     VL+
Sbjct: 59  IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLA 118

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            +   G  P+T+T + L+     K  V+  L    +    G   N V +  +I G+C
Sbjct: 119 KILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVC 175


>gi|159464329|ref|XP_001690394.1| hypothetical protein CHLREDRAFT_114572 [Chlamydomonas reinhardtii]
 gi|158279894|gb|EDP05653.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 287

 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 132/288 (45%), Gaps = 37/288 (12%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
            +  +I+ CG    + RA +++AEM +    +D +  T  ALM  C  A ++D A++VYK
Sbjct: 2   TYTTMISQCGSHQQLRRALELVAEMRS--RGIDCNVHTYSALMNVCIKANELDLAQDVYK 59

Query: 216 MIHK---------YNI--------KGTPE------------------VYTIAINCCSQTG 240
            + +         YNI        + T E                   Y   I+ C+++G
Sbjct: 60  QMLEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSG 119

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
             E A  VY+ M   GV P     +ALI   G  G+VE A +I ++   +G    +I+YS
Sbjct: 120 QPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYS 179

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           SL+ AC  A  W+ ALEL+  M     KP V T N+LI A   G    K  E+   M++ 
Sbjct: 180 SLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQTQ 239

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           G  P++ITY  L+ A ER       L    Q +  G  P+  +F  ++
Sbjct: 240 GCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 141/290 (48%), Gaps = 19/290 (6%)

Query: 30  HSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++Y  +I Q     ++   ++L+ +M  +G+ D +   ++   NVC     +  A   +K
Sbjct: 1   YTYTTMISQCGSHQQLRRALELVAEMRSRGI-DCNVHTYSALMNVCIKANELDLAQDVYK 59

Query: 86  LV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +     +P L T+N+L+ V AS + +    ++   +  +G++A+ + Y T+I+ C KSG
Sbjct: 60  QMLEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSG 119

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           + +   +         VKP    + ALI+A G+ G V++A D+  +M       + + IT
Sbjct: 120 QPEQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIR--RGCERNVIT 177

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +L+ AC  AG+ + A E++  +HK N K     Y   I  CS  G WE A  +++ M 
Sbjct: 178 YSSLISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQMQ 237

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            +G  PD +    LI      G+   A +  ++ ++QG       ++SLM
Sbjct: 238 TQGCKPDSITYCGLITAYERGGQWRRALKAFEQMQSQGCHPDAAVFNSLM 287



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 67/235 (28%), Positives = 115/235 (48%), Gaps = 2/235 (0%)

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   ++  C +  Q+ RA E+   +    I      Y+  +N C +  + + A  VY  M
Sbjct: 2   TYTTMISQCGSHQQLRRALELVAEMRSRGIDCNVHTYSALMNVCIKANELDLAQDVYKQM 61

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            ++G  P+ V  + LID      K      +       GI   + +Y++++ AC+ +   
Sbjct: 62  LEEGCSPNLVTYNILIDVEASKRKTTERRRLAVALVRSGIQAEVRTYNTVISACNKSGQP 121

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           ++AL++YE M +  +KP+ +T  ALI+A     Q+ K +++  DM   G   N ITYS L
Sbjct: 122 EQALKVYEKMLAAGVKPSATTYTALISAYGKKGQVEKALDIFRDMIRRGCERNVITYSSL 181

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 425
           + ACE+    E+ L L S+  ++   PN+V +  +I  CS    +EKA  L E +
Sbjct: 182 ISACEKAGRWEMALELFSKMHKENCKPNVVTYNSLIAACSHGGHWEKASELFEQM 236


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 193/406 (47%), Gaps = 21/406 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFK 85
           ++N LI      G++ E +   + +   G   +D+V +    N +CK  +  + A +  K
Sbjct: 131 TFNTLINGICLNGKLKEALHFHDHVIALGF-HLDQVSYRTLINGLCKIGET-RAALQMLK 188

Query: 86  LVPNPTLST----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +    ++T    +N++++     K    A+Q+   +    +  D   + +LI      G
Sbjct: 189 KIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVG 248

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++   F        +N+ PD   F+ L+ A  + G + RA ++LA M  +   V PD +T
Sbjct: 249 QLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQ--GVIPDVVT 306

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +LM       +V++A+ V+  + +  +      Y I IN   +    + A S++ +M 
Sbjct: 307 YSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMC 366

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            KG+ PD V  ++LID     G++  A++++ E  N GI   I++Y+SL+       +  
Sbjct: 367 CKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHID 426

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA+ L + +K   ++P++ T N LI  LC G +L    +V  D+   G   N  TY+I++
Sbjct: 427 KAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMI 486

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
               ++       +LLS+ + +G+IP+ V ++ II    R+ E  +
Sbjct: 487 NGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEK 532



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 166/369 (44%), Gaps = 52/369 (14%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAF----QVLRL---------------------VQEA--- 121
           PT+ TFN+L++      +   AF    ++L+L                     ++EA   
Sbjct: 92  PTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHF 151

Query: 122 -------GLKADCKLYTTLITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQ 166
                  G   D   Y TLI    K G+  A  + +K         D V++N +I +  +
Sbjct: 152 HDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCK 211

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-T 225
             AV  A+ + +EM  +   + PD +T  +L+      GQ+   +E + + H+  +K   
Sbjct: 212 DKAVSDAYQLYSEMITK--RISPDVVTFNSLILGFCVVGQL---KEAFGLFHEMVLKNIN 266

Query: 226 PEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
           P+VYT  I ++   + G+   A ++   M K+GVIPD V  S+L+D      +V  A  +
Sbjct: 267 PDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHV 326

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
                  G++    SY+ ++      K   +AL L++ M    + P   T N+LI  LC 
Sbjct: 327 FSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCK 386

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
             ++    +++ +M + G+  + +TY+ L+    +   ++  + L+ + K+ G+ P++  
Sbjct: 387 LGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYT 446

Query: 404 FKCII-GMC 411
           +  +I G+C
Sbjct: 447 YNILIDGLC 455



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 170/392 (43%), Gaps = 22/392 (5%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P  V FN ++ +  ++        +      E+  + P  +T   L+    + G++  A 
Sbjct: 55  PSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAF 114

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            ++  I K     T   +   IN     G  + A   +D +   G   D+V    LI+  
Sbjct: 115 SIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGL 174

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G+  AA ++L++ + + ++  ++ Y+ ++ +    K    A +LY  M + ++ P V
Sbjct: 175 CKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDV 234

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T N+LI   C   QL +   +  +M    + P+  T+SIL+ A  +  ++     +L+ 
Sbjct: 235 VTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAV 294

Query: 392 AKEDGVIPNLVMFK------CIIGMCSRRYEKARTLNE-----HVLSFN---SGRPQIEN 437
             + GVIP++V +       C++   ++      T++      H  S+N   +G  +I  
Sbjct: 295 MMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKI-- 352

Query: 438 KWTSLALMVYREAIVAGTIP-TVEVVSKVLGCLQL---PYNADIRERLVENLGVSADALK 493
           K    AL +++E    G  P TV   S + G  +L    Y   + + +  N G+ AD L 
Sbjct: 353 KMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNN-GIPADILT 411

Query: 494 RSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
            ++L  ++      D +A +L+++    GI P
Sbjct: 412 YNSLIDVLCKNHHID-KAIALVKKIKDQGIQP 442



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 10/241 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P + T++ LM       +   A  V   +   G+      Y  +I    K   VD   ++
Sbjct: 302 PDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSL 361

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F+      + PD V +N+LI    + G +  A+ ++ EM+    P D   +T  +L+   
Sbjct: 362 FKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADI--LTYNSLIDVL 419

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                +D+A  + K I    I+ +   Y I I+   + G  + A  V+ D+  KG   + 
Sbjct: 420 CKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNA 479

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + +I+     G    A  +L + +N GI    ++Y +++ A       +KA +L   
Sbjct: 480 WTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLRE 539

Query: 322 M 322
           M
Sbjct: 540 M 540



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 117/271 (43%), Gaps = 17/271 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVPNPT 91
           L + G I+   ++L  M ++G++     Y +     C   +  K    F    +L   P 
Sbjct: 279 LCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPH 338

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VD 144
             ++N++++     K  + A  + + +   G+  D   Y +LI    K G+       VD
Sbjct: 339 AHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVD 398

Query: 145 AMFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            M  N  P D + +N+LI    ++  +D+A  ++ ++  +   + P   T   L+     
Sbjct: 399 EMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQ--GIQPSMYTYNILIDGLCK 456

Query: 204 AGQVDRAREVYK--MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            G++  A++V++  +I  Y++      Y I IN   + G +  A  +   M   G+IPD 
Sbjct: 457 GGRLKNAQDVFQDLLIKGYSVNAW--TYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDA 514

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           V    +I       + E A ++L+E   +G+
Sbjct: 515 VTYETIIRALFRKDENEKAEKLLREMIIRGL 545


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 141/280 (50%), Gaps = 8/280 (2%)

Query: 153 DRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDP--DHITIGALMKACANAGQV 207
           D     AL+    +SG V RA   FD L  ++ + H + P  + +T   ++  C    Q+
Sbjct: 153 DSGALAALLKELNKSGHVRRAQELFDWLRGLD-DSHDLYPLCNTMTYTTMISQCGTQQQL 211

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
            RA E+   +    I+     Y+  +N C +  + + A  VY  M  +G  P+ V  + L
Sbjct: 212 RRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTL 271

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ID  G  G  E A  +L   + QGI   I +Y++++ AC+ +   Q+AL +YE M +   
Sbjct: 272 IDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGA 331

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           +PT +T  ALI+A     QL + +++  DM   G   N ITYS L+ ACE+    E+ L 
Sbjct: 332 QPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALE 391

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 425
           L  +   +G  PN+V +  +I  C++  ++EKA+ + E +
Sbjct: 392 LFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQM 431



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/413 (25%), Positives = 176/413 (42%), Gaps = 28/413 (6%)

Query: 16  GKHANYAHDVSEQLHSYNRLIRQ----GRISECID----LLEDMERKGLLDMDKVYHARF 67
           G+   +A D  ++   Y RL +Q    GR     D       +M  + LL++ +    R 
Sbjct: 80  GRQNTHAGDPRQKNQGYRRLWQQVTQVGRGQRLGDHEGSAFSEMTVEDLLEVVR----RL 135

Query: 68  FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKAD 126
                + KAI +   +F    +  L+     ++     + ++  F  LR + ++  L   
Sbjct: 136 PPEASAVKAIGQGLYYFD---SGALAALLKELNKSGHVRRAQELFDWLRGLDDSHDLYPL 192

Query: 127 CKL--YTTLITTCAKSGKVDAMFENVKPDRV--------VFNALITACGQSGAVDRAFDV 176
           C    YTT+I+ C    ++    E V   R          ++AL+  C +   +D A DV
Sbjct: 193 CNTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDV 252

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
             +M AE     P+ +T   L+      G  + A  V   + +  I      Y   I  C
Sbjct: 253 YRQMLAEG--CTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIAC 310

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           + +G  + A  +Y+ M   G  P     +ALI   G  G+++ A +I Q+   +G    +
Sbjct: 311 NMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNV 370

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           I+YSSL+ AC  A  W+ ALEL+  M +   +P V T N+LI A   G Q  K  E+   
Sbjct: 371 ITYSSLISACEKAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQ 430

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           M+  G  P+ +T+  L+ A +R       L    Q K     P+ V++  I+G
Sbjct: 431 MQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVG 483



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 143/321 (44%), Gaps = 26/321 (8%)

Query: 40  RISECIDLLEDMERKGLLDMDKVY-------HARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           R  E  D L     +GL D   +Y       +    + C +Q+ ++ A      + +  +
Sbjct: 172 RAQELFDWL-----RGLDDSHDLYPLCNTMTYTTMISQCGTQQQLRRALELVAEMRSRGI 226

Query: 93  S----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------ 142
                T++ LM+VC    + + A  V R +   G   +   Y TLI    K+G       
Sbjct: 227 QCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIR 286

Query: 143 -VDAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            +DA+  + + P+   +N +I AC  SG    A  +   M A      P   T  AL+ A
Sbjct: 287 VLDALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAG--AQPTATTYTALISA 344

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               GQ+DRA ++++ + +   +     Y+  I+ C + G WE A  ++ +M  +G  P+
Sbjct: 345 YGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALELFREMHTEGCRPN 404

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  ++LI       + E A E+ ++ +++G     +++  L+ A   A +W++AL  +E
Sbjct: 405 VVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFE 464

Query: 321 HMKSIKLKPTVSTMNALITAL 341
            MK+   +P     N ++ AL
Sbjct: 465 QMKAHNCRPDSVVYNTIVGAL 485



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 124/266 (46%), Gaps = 17/266 (6%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLD---MDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +H+Y+ L+        +DL  D+ R+ L +    + V +    +V     A +EA R   
Sbjct: 230 VHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLD 289

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +     +P + T+N ++  C  S  ++ A ++   +  AG +     YT LI+   K+G
Sbjct: 290 ALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKNG 349

Query: 142 KVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++D    +F+++     + + + +++LI+AC ++G  + A ++  EM+ E     P+ +T
Sbjct: 350 QLDRALQIFQDMVRRGCERNVITYSSLISACEKAGRWELALELFREMHTEG--CRPNVVT 407

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +L+ ACA   Q ++A+E+++ +     K     +   I    + G W  A + ++ M 
Sbjct: 408 YNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAYDRAGHWRRALTAFEQMK 467

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEA 279
                PD V  + ++      G V A
Sbjct: 468 AHNCRPDSVVYNTIVGALWKTGLVWA 493



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/278 (21%), Positives = 118/278 (42%), Gaps = 35/278 (12%)

Query: 260 DEVFLSALI---DFAGHAGKVEAAFEILQ---EAKNQGISVGIISYSSLMGACSNAKNWQ 313
           D   L+AL+   + +GH  + +  F+ L+   ++ +       ++Y++++  C   +  +
Sbjct: 153 DSGALAALLKELNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLR 212

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +ALEL   M+S  ++  V T +AL+     G++L   ++V   M + G  PN +TY+ L+
Sbjct: 213 RALELVAEMRSRGIQCNVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLI 272

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP 433
               +    E  + +L   +  G+ P +  +  +I  C+                 SG+ 
Sbjct: 273 DVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIACNM----------------SGQA 316

Query: 434 QIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSA 489
           Q        AL +Y   + AG  PT    + ++       QL     I + +V   G   
Sbjct: 317 Q-------EALRIYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRR-GCER 368

Query: 490 DALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 527
           + +  S+L S  +  G ++  A  L  E  + G  P V
Sbjct: 369 NVITYSSLISACEKAGRWE-LALELFREMHTEGCRPNV 405


>gi|307105412|gb|EFN53661.1| hypothetical protein CHLNCDRAFT_58444 [Chlorella variabilis]
          Length = 1131

 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 125/487 (25%), Positives = 217/487 (44%), Gaps = 46/487 (9%)

Query: 160 LITACGQSGAVDRA---FDVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVY 214
           +I   G+ G   R    FD+L  +     P+ P  D  T  +++  C     + RA  + 
Sbjct: 256 VIKDLGKGGLPHRGAQLFDLLRRLGPG-SPLAPLLDEFTFTSMISNCVAQQDLGRAMALA 314

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           + +    I+     ++  +N C + G ++ A  VY DM   G   + V  + LID  G +
Sbjct: 315 EEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDMQAAGCPANVVTYNTLIDVYGKS 374

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G+ E A  +L++ K + I     ++++LM AC+ +  WQ+AL +YE M +    P  +T 
Sbjct: 375 GQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSNQWQEALRVYEQMAASSHPPNTTTY 434

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           NALI+A   G  LPK + V  +M   G   + ITYS L+ ACE+  + ++ L L  + + 
Sbjct: 435 NALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYSSLISACEKAGEWKLALQLFEEMRG 494

Query: 395 DGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 452
           +G +PN++ +  +I  C++  ++EKA  + E  +     RP + + +T+L     R    
Sbjct: 495 EGCVPNVISYNSLITACAQGAQWEKAAEVFEQ-MQRQGCRPDVVS-YTALIQAYERGGQW 552

Query: 453 AGTIPTVEVVSKVLGCL--QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR 510
              +   E + +   C    + YN  I            D L  +       G G    +
Sbjct: 553 RRALAAFEEMIRARPCAPDSIVYNTII------------DVLWET-------GVGWAQRK 593

Query: 511 AFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIH--TAKVYLLTILKGLRHRLAA-GAKL 567
           A SL  +A++ G++ C S         + +L +H  T  V LL++   L   LA   A+ 
Sbjct: 594 AASLFRQASAEGLIRCHSH----AAGGSLELNLHSTTPGVALLSLHCWLHDLLAKLQAEG 649

Query: 568 PNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQ----GNGSYGKIRIN 623
           P     LP +K  I++  G+          + + ALLR L  P++         G++   
Sbjct: 650 PEA---LP-DKICIIAGKGKSKDAPHSIIKETVGALLRSLRSPFEEAPDSTPHVGRLEAA 705

Query: 624 GLALKRW 630
           G  +  W
Sbjct: 706 GKLVAEW 712



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 135/289 (46%), Gaps = 11/289 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DA 145
           TF  ++S C + +D   A  +   +++ G++ +   ++ L+  C K G+         D 
Sbjct: 293 TFTSMISNCVAQQDLGRAMALAEEMRDRGIERNVHTFSALMNVCIKCGQYKLALDVYRDM 352

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                  + V +N LI   G+SG  + A  VL +M  E   + P   T   LM AC  + 
Sbjct: 353 QAAGCPANVVTYNTLIDVYGKSGQWEEALAVLEQMKRER--IQPVTRTFNTLMIACNTSN 410

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           Q   A  VY+ +   +       Y   I+  S+ GD     +V+ +M +KG     +  S
Sbjct: 411 QWQEALRVYEQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYS 470

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           +LI     AG+ + A ++ +E + +G    +ISY+SL+ AC+    W+KA E++E M+  
Sbjct: 471 SLISACEKAGEWKLALQLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQ 530

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILL 373
             +P V +  ALI A   G Q  + +    +M     C P++I Y+ ++
Sbjct: 531 GCRPDVVSYTALIQAYERGGQWRRALAAFEEMIRARPCAPDSIVYNTII 579



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 132/289 (45%), Gaps = 13/289 (4%)

Query: 130 YTTLITTCAKS---GKVDAMFENVKPDRVV------FNALITACGQSGAVDRAFDVLAEM 180
           +T++I+ C      G+  A+ E ++ DR +      F+AL+  C + G    A DV  +M
Sbjct: 294 FTSMISNCVAQQDLGRAMALAEEMR-DRGIERNVHTFSALMNVCIKCGQYKLALDVYRDM 352

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
            A   P +   +T   L+     +GQ + A  V + + +  I+     +   +  C+ + 
Sbjct: 353 QAAGCPAN--VVTYNTLIDVYGKSGQWEEALAVLEQMKRERIQPVTRTFNTLMIACNTSN 410

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
            W+ A  VY+ M      P+    +ALI      G +     + +E   +G    +I+YS
Sbjct: 411 QWQEALRVYEQMAASSHPPNTTTYNALISAHSKGGDLPKVLAVFKEMVQKGCERSVITYS 470

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           SL+ AC  A  W+ AL+L+E M+     P V + N+LITA   G Q  K  EV   M+  
Sbjct: 471 SLISACEKAGEWKLALQLFEEMRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQ 530

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQA-KEDGVIPNLVMFKCII 408
           G  P+ ++Y+ L+ A ER       L    +  +     P+ +++  II
Sbjct: 531 GCRPDVVSYTALIQAYERGGQWRRALAAFEEMIRARPCAPDSIVYNTII 579



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 21/173 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + G + + + + ++M +KG  +   + ++   + C+     K A + F+ 
Sbjct: 433 TYNALISAHSKGGDLPKVLAVFKEMVQKGC-ERSVITYSSLISACEKAGEWKLALQLFEE 491

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141
           +      P + ++N L++ CA     E A +V   +Q  G + D   YT LI    + G 
Sbjct: 492 MRGEGCVPNVISYNSLITACAQGAQWEKAAEVFEQMQRQGCRPDVVSYTALIQAYERGGQ 551

Query: 142 --KVDAMFENV------KPDRVVFNALITACGQSG---AVDRAFDVLAEMNAE 183
             +  A FE +       PD +V+N +I    ++G   A  +A  +  + +AE
Sbjct: 552 WRRALAAFEEMIRARPCAPDSIVYNTIIDVLWETGVGWAQRKAASLFRQASAE 604


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 177/399 (44%), Gaps = 18/399 (4%)

Query: 27  EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           E  +   RL+R G + E    LEDM  +G +       +    +CK+ K  K A R  ++
Sbjct: 112 ENNNHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWK-ATRVMEI 170

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + +    P + T+N+L+S    + +   A Q+L       +  D   Y T++ T   SGK
Sbjct: 171 LEDSGAVPDVITYNVLISGYCKTGEIGSALQLL---DRMSVSPDVVTYNTILRTLCDSGK 227

Query: 143 VDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +    E           PD + +  LI A  +   V +A  +L EM  +     PD +T 
Sbjct: 228 LKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDK--GCKPDVVTY 285

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+      G++D A      +  Y  +     + I +     TG W  A     +M +
Sbjct: 286 NVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIR 345

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           KG  P  V  + LI+F    G +  A ++L++    G +   +SY+ L+ A    K  ++
Sbjct: 346 KGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMER 405

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A+E  + M S    P + T N L+TALC   ++   +E+L+ + S G  P  ITY+ ++ 
Sbjct: 406 AIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVID 465

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
              +    +  + LL + K  G+ P+++ +  ++G  SR
Sbjct: 466 GLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSR 504



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 177/392 (45%), Gaps = 23/392 (5%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLE-DMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           VS  + +YN ++R     G++ E +++L+  M+R+   D+   Y       CK +  + +
Sbjct: 208 VSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDV-ITYTILIEATCK-ESGVGQ 265

Query: 80  AFRFFKLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           A +    + +    P + T+N+L++ +C   +  E A + L  +   G + +   +  ++
Sbjct: 266 AMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDE-AIRFLNHMPSYGCQPNVITHNIIL 324

Query: 135 TTCAKSGK--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
            +   +G+         + + +   P  V FN LI    + G + RA DVL +M    H 
Sbjct: 325 RSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQ--HG 382

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             P+ ++   L+ A     +++RA E   ++           Y   +    + G  + A 
Sbjct: 383 CTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 442

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            + + +  KG  P  +  + +ID     GK + A ++L E K +G+   II+YS+L+G  
Sbjct: 443 EILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGL 502

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
           S      +A+  +  ++ + +KP   T N+++  LC   Q  + ++ L+ M + G  P  
Sbjct: 503 SREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTE 562

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
            +Y IL+     +   +  L LL++    GV+
Sbjct: 563 TSYMILIEGLAYEGLAKEALELLNELCSRGVV 594



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 165/392 (42%), Gaps = 46/392 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPNPTLS 93
           L + G+  +   ++E +E  G +     Y+      CK+ + I  A +   ++  +P + 
Sbjct: 155 LCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGE-IGSALQLLDRMSVSPDVV 213

Query: 94  TFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-TTCAKSGKVDAMF---- 147
           T+N +L ++C S K  E A +VL    +     D   YT LI  TC +SG   AM     
Sbjct: 214 TYNTILRTLCDSGKLKE-AMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDE 272

Query: 148 ---ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM-------NAEVHPV---------- 187
              +  KPD V +N LI    + G +D A   L  M       N   H +          
Sbjct: 273 MRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGR 332

Query: 188 ----------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
                            P  +T   L+      G + RA +V + + ++        Y  
Sbjct: 333 WMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNP 392

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            ++   +    E A    D M  +G  PD V  + L+      GKV+ A EIL +  ++G
Sbjct: 393 LLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKG 452

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
            S  +I+Y++++   S       A++L + MK   LKP + T + L+  L    ++ + +
Sbjct: 453 CSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAI 512

Query: 352 EVLSDMKSLGLCPNTITY-SILLVACERKDDV 382
               D++ +G+ PN ITY SI+L  C+ +  V
Sbjct: 513 AFFHDLEEMGVKPNAITYNSIMLGLCKARQTV 544


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 175/394 (44%), Gaps = 19/394 (4%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LIR    +GRI + + + +DM  +G       Y       CK +   ++A      
Sbjct: 253 TFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCK-ESGYRQAMALLDE 311

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+N+L++   +  D + A  +L  +   G K D   YT ++ +   S +
Sbjct: 312 MRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSER 371

Query: 143 VDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
              + E        N  PD V FN ++T+  Q G VDRA +V+  M+   H    D +T 
Sbjct: 372 WKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSE--HGCVADIVTY 429

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +++    + G+VD A E+   +  Y  K     YT  +     T  WE A  +  +M  
Sbjct: 430 SSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLC 489

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
               PDEV  + ++      G V+ A  ++++    G S  I++Y+ ++    N      
Sbjct: 490 SDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDD 549

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A+EL   ++S   KP + T N L+  LC  D+     +++++M      P+ +T++ ++ 
Sbjct: 550 AMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVIT 609

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +  +K  +   +  L    E+G +PN   +  ++
Sbjct: 610 SLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVV 643



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 103/447 (23%), Positives = 198/447 (44%), Gaps = 20/447 (4%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS 93
           RL   GR+S+   +   +     +     Y+      C++ + I++A R    +P P  +
Sbjct: 196 RLCSDGRVSDAERVFAALGPSATV---VTYNTMVNGYCRAGR-IEDARRLINGMPFPPDT 251

Query: 94  -TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-TTCAKSGKVDAMF---- 147
            TFN L+           A  V   +   G       Y+ L+  TC +SG   AM     
Sbjct: 252 FTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDE 311

Query: 148 ---ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
              +  +PD V +N LI A    G VD A ++L+  N   H   PD +T   ++K+   +
Sbjct: 312 MRAKGCEPDIVTYNVLINAMCNEGDVDEALNILS--NLPSHGCKPDAVTYTPVLKSLCGS 369

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
            +     E+   +   N       +   +    Q G  + A  V D M++ G + D V  
Sbjct: 370 ERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTY 429

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           S+++D     G+V+ A E+L   K+ G     I+Y++++    + + W++A EL   M  
Sbjct: 430 SSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLC 489

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
               P   T N ++ +LC    + + + V+  M   G  P+ +TY+ ++     +  ++ 
Sbjct: 490 SDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDD 549

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            + LLS  +  G  P++V F  ++ G+C   R+E A  L  +++  N   P  E  + ++
Sbjct: 550 AMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNC--PPDELTFNTV 607

Query: 443 ALMVYREAIVAGTIPTVEVVSKVLGCL 469
              + ++ ++   I T++++++  GC+
Sbjct: 608 ITSLCQKGLLTQAIETLKIMAEN-GCV 633



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/390 (22%), Positives = 165/390 (42%), Gaps = 18/390 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFF--NVCKSQKAIKEAFRFFKLVPNPTL 92
           L+++G I E + L + M   G  +   V         +C   +       F  L P+ T+
Sbjct: 160 LVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAALGPSATV 219

Query: 93  STFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------- 143
            T+N M+   C + +  +      RL+       D   +  LI      G++        
Sbjct: 220 VTYNTMVNGYCRAGRIEDAR----RLINGMPFPPDTFTFNPLIRALCVRGRIPDALAVFD 275

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           D +     P  V ++ L+ A  +     +A  +L EM A+    +PD +T   L+ A  N
Sbjct: 276 DMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAK--GCEPDIVTYNVLINAMCN 333

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G VD A  +   +  +  K     YT  +     +  W+    +  +MT     PDEV 
Sbjct: 334 EGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVT 393

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + ++      G V+ A E++      G    I++YSS++    +      A+EL   +K
Sbjct: 394 FNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLK 453

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           S   KP       ++  LC  +Q  +  E++++M      P+ +T++ ++ +  +K  V+
Sbjct: 454 SYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGLVD 513

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
             + ++ Q  E+G  P++V + CII G+C+
Sbjct: 514 RAIRVVEQMSENGCSPDIVTYNCIIDGLCN 543



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 96/443 (21%), Positives = 176/443 (39%), Gaps = 52/443 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N +  +G + E +++L ++   G       Y     ++C S++  +      ++  N   
Sbjct: 329 NAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCA 388

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   TFN +++        + A +V+  + E G  AD   Y++++      G+VD   E 
Sbjct: 389 PDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVEL 448

Query: 149 ------------------------------------------NVKPDRVVFNALITACGQ 166
                                                     +  PD V FN ++ +  Q
Sbjct: 449 LSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQ 508

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
            G VDRA  V+ +M+   +   PD +T   ++    N   +D A E+   +     K   
Sbjct: 509 KGLVDRAIRVVEQMSE--NGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDI 566

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             +   +        WE A  +  +M +    PDE+  + +I      G +  A E L+ 
Sbjct: 567 VTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKI 626

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               G      +YS ++ A   A   Q ALEL   M +    P + T N +I+ L    +
Sbjct: 627 MAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNGT--PDLITYNTVISNLTKAGK 684

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK- 405
           + + +++L  M S GLCP+T TY  L     R+D  +  + +L + ++ G+ P+   +  
Sbjct: 685 MEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYND 744

Query: 406 CIIGMC-SRRYEKARTLNEHVLS 427
            ++G C  RR + A     H++S
Sbjct: 745 VLLGFCRDRRTDLAIDCFAHMVS 767



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/352 (21%), Positives = 142/352 (40%), Gaps = 23/352 (6%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           GR+ + ++LL  ++  G       Y      +C +++  +      +++ +   P   TF
Sbjct: 440 GRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTF 499

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           N +++        + A +V+  + E G   D   Y  +I        +D   E       
Sbjct: 500 NTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQS 559

Query: 149 -NVKPDRVVFNALITA-CGQSGAVDRAFD---VLAEMNAEVHPVDPDHITIGALMKACAN 203
              KPD V FN L+   CG    VDR  D   ++A M     P  PD +T   ++ +   
Sbjct: 560 CGCKPDIVTFNTLLKGLCG----VDRWEDAEQLMANMMRSNCP--PDELTFNTVITSLCQ 613

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G + +A E  K++ +         Y+I ++   + G  + A  +   MT     PD + 
Sbjct: 614 KGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG--TPDLIT 671

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + +I     AGK+E A ++L+   + G+     +Y SL           +A+ +   ++
Sbjct: 672 YNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQ 731

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
              L P  +  N ++   C   +    ++  + M S G  P+  TY ILL A
Sbjct: 732 DTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEA 783



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 125/285 (43%), Gaps = 18/285 (6%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDA-- 145
           +P + T+N ++    +    + A ++L  +Q  G K D   + TL+   C      DA  
Sbjct: 528 SPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQ 587

Query: 146 -----MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                M  N  PD + FN +IT+  Q G + +A + L  M AE   V P+  T   ++ A
Sbjct: 588 LMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIM-AENGCV-PNSSTYSIVVDA 645

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              AG+   A E+   +      GTP++  Y   I+  ++ G  E A  +   M   G+ 
Sbjct: 646 LLKAGKAQAALELLSGM----TNGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLC 701

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS-LMGACSNAKNWQKALE 317
           PD     +L          + A  +L+  ++ G+S     Y+  L+G C + +    A++
Sbjct: 702 PDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRT-DLAID 760

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
            + HM S    P  ST   L+ AL  G  L +   +L+ + SLG+
Sbjct: 761 CFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLGV 805


>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 878

 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 160/350 (45%), Gaps = 24/350 (6%)

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A+KE +         T+  F+ L+S    S     A +V   ++  GL  +   Y  +I 
Sbjct: 216 ALKEGY-------GKTVYAFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVID 268

Query: 136 TCAKSG----KV----DAMFEN-VKPDRVVFNALITACGQSG---AVDRAFDVLAEMNAE 183
            C K G    KV    D M  N V+PDR+ FN+L+  C + G   A  R F  + +    
Sbjct: 269 ACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKG-- 326

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
              +D D  T   L+ A    GQ+D A E+   +   NI      Y+  I+  ++ G  +
Sbjct: 327 ---IDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLD 383

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A +++++M   GV  D V  + L+      G+ E A ++ +E +N GI   +++Y++L+
Sbjct: 384 DALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALL 443

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                   + +   ++E MK  ++ P + T + LI     G    + MEV  + K  GL 
Sbjct: 444 AGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLK 503

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            + + YS L+ A  +   VE  + LL +  ++G+ PN+V +  II    R
Sbjct: 504 ADVVLYSALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGR 553



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 109/456 (23%), Positives = 194/456 (42%), Gaps = 47/456 (10%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPN---PTL 92
           R G  +E I + + M+  GL+     Y+A      K     K+    F  ++ N   P  
Sbjct: 237 RSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDR 296

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---- 148
            TFN L++VC+     E A ++   + + G+  D   Y TL+    K G++D  FE    
Sbjct: 297 ITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSE 356

Query: 149 ----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
               N+ P+ V ++ +I    + G +D A ++  EM  +   V  D ++   L+   A  
Sbjct: 357 MPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEM--KFLGVGLDRVSYNTLLSVYAKL 414

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G+ ++A +V K +    I+     Y   +    +   ++    V+++M +  V P+ +  
Sbjct: 415 GRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTY 474

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           S LID     G  + A E+ +E K  G+   ++ YS+L+ A       + ++ L + M  
Sbjct: 475 STLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGLVESSVTLLDEMTK 534

Query: 325 IKLKPTVSTMNALITAL-------C----DGDQLPKTMEVLSDM--------KSLGLCPN 365
             ++P V T N++I A        C     G+     +E LS +        ++     N
Sbjct: 535 EGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTALQVESLSSIVVQEAIESQAADKEDN 594

Query: 366 TITYSILLVACER--------KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RY 415
            I      +A E+        K ++   L +  +  E  + PN+V F  I+  CSR   +
Sbjct: 595 RIIEIFGKLAAEKACEAKNSGKQEILCILGVFQKMHELKIKPNVVTFSAILNACSRCDSF 654

Query: 416 EKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAI 451
           E A  L E +  F++   Q+      L LM YRE +
Sbjct: 655 EDASMLLEELRLFDN---QVYGVAHGL-LMGYRENV 686



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/330 (22%), Positives = 152/330 (46%), Gaps = 13/330 (3%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLV--QEAGLKADCKLYTTLITTCAKSGKVD-------- 144
           +  L+    +  DS  A +       +E+G     KL + +I+T  + GKV+        
Sbjct: 156 YTFLLRELGNRGDSAKAVRCFEFAVRRESGKNEQGKLASAMISTLGRLGKVELAKAVFDT 215

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           A+ E        F+ALI+A G+SG  + A  V   M +  + + P+ +T  A++ AC   
Sbjct: 216 ALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKS--NGLMPNLVTYNAVIDACGKG 273

Query: 205 G-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           G +  +  E++  +    ++     +   +  CS+ G WE A  ++  M  KG+  D   
Sbjct: 274 GVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEAARRLFSAMVDKGIDQDIFT 333

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + L+D     G+++ AFEI+ E   + I   +++YS+++   +       AL ++  MK
Sbjct: 334 YNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMK 393

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
            + +     + N L++      +  + ++V  +M++ G+  + +TY+ LL    ++   +
Sbjct: 394 FLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGKQYRYD 453

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
               +  + K   V PNL+ +  +I + S+
Sbjct: 454 EVRRVFEEMKRGRVSPNLLTYSTLIDVYSK 483



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           A++      G+V+ A+ V+    K     T   ++  I+   ++G    A  V+D M   
Sbjct: 195 AMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSN 254

Query: 256 GVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           G++P+ V  +A+ID  G  G + +   EI     + G+    I+++SL+  CS    W+ 
Sbjct: 255 GLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCSRGGLWEA 314

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A  L+  M    +   + T N L+ A+C G Q+    E++S+M +  + PN +TYS ++ 
Sbjct: 315 ARRLFSAMVDKGIDQDIFTYNTLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMID 374

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
              +   ++  L + ++ K  GV  + V +  ++ + ++  R+E+A
Sbjct: 375 GYAKVGRLDDALNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQA 420



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 147/334 (44%), Gaps = 43/334 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN L+    + GR  + +D+ ++ME  G+      Y+A      K Q    E  R F+ 
Sbjct: 403 SYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAGYGK-QYRYDEVRRVFEE 461

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     +P L T++ L+ V +     + A +V R  ++AGLKAD  LY+ LI    K+G 
Sbjct: 462 MKRGRVSPNLLTYSTLIDVYSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDALCKNGL 521

Query: 143 VDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA-EVHPVDPDHIT 193
           V++          E ++P+ V +N++I A G+S +     D   E  A +V  +    I 
Sbjct: 522 VESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTALQVESLSS--IV 579

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS--QTGDWEFAC--SVY 249
           +   +++ A   + +R  E++  +              A   C    +G  E  C   V+
Sbjct: 580 VQEAIESQAADKEDNRIIEIFGKL-------------AAEKACEAKNSGKQEILCILGVF 626

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
             M +  + P+ V  SA+++        E A  +L+E +     V  +++  LMG   N 
Sbjct: 627 QKMHELKIKPNVVTFSAILNACSRCDSFEDASMLLEELRLFDNQVYGVAHGLLMGYRENV 686

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
             W +A  L++ +K +      ST +A   AL D
Sbjct: 687 --WLQAQSLFDEVKLMD----SSTASAFYNALTD 714



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 14/212 (6%)

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-------WEFACSVYDDMTKKGV 257
           G+ D+A E   +  +  + G P+ YT  +      GD       +EFA        ++G 
Sbjct: 133 GKDDKALENVLLNFESRLCG-PDDYTFLLRELGNRGDSAKAVRCFEFAVRRESGKNEQGK 191

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
           +      SA+I   G  GKVE A  +   A  +G    + ++S+L+ A   +    +A++
Sbjct: 192 LA-----SAMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIK 246

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGD-QLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +++ MKS  L P + T NA+I A   G  +  K +E+   M S G+ P+ IT++ LL  C
Sbjct: 247 VFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVC 306

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            R    E    L S   + G+  ++  +  ++
Sbjct: 307 SRGGLWEAARRLFSAMVDKGIDQDIFTYNTLL 338


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 178/394 (45%), Gaps = 19/394 (4%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LIR    +GR+ + + + +DM  +G       Y       CK+    ++A      
Sbjct: 164 TFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKAS-GYRQAMVLLDE 222

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+N+L++   +  D + A  +L  +   G K D   YT ++ +   S +
Sbjct: 223 MRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSER 282

Query: 143 ---VDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
              V+ +F  +      PD V FN ++T+  Q G VDRA  V+  M+   H   PD +T 
Sbjct: 283 WKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSE--HGCIPDIVTY 340

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +++    + G+VD A E+   +  Y  K     YT  +        WE A  +  +M  
Sbjct: 341 SSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVC 400

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
               PDEV  + +I      G V+ A +++++    G +  I++Y+S++    N +    
Sbjct: 401 SDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDD 460

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A+EL  +++S   KP + T N L+  LC  D+     +++ +M      P+  T++ ++ 
Sbjct: 461 AMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVIT 520

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +  +K  +   +  L    E+G IPN   +  ++
Sbjct: 521 SLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVV 554



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 153/315 (48%), Gaps = 15/315 (4%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           V +N ++    ++G ++ A  +++ M     P  PD  T   L++A    G+V  A  V+
Sbjct: 131 VTYNTMVNGYCRAGRIEDARRLISGM-----PFPPDTFTFNPLIRALCVRGRVPDALAVF 185

Query: 215 K-MIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
             M+H+     +P V  Y+I ++   +   +  A  + D+M  KG  PD V  + LI+  
Sbjct: 186 DDMLHR---GCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAM 242

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
            + G V+ A  IL +  + G     ++Y+ ++ +   ++ W++  EL+  M S K  P  
Sbjct: 243 CNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDE 302

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T N ++T+LC    + + ++V+  M   G  P+ +TYS +L        V+  + LLS+
Sbjct: 303 VTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSR 362

Query: 392 AKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 449
            K  G  P+ + +  ++ G+CS  ++E A  L   ++   S  P  E  + ++   + ++
Sbjct: 363 LKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVC--SDCPPDEVTFNTVIASLCQK 420

Query: 450 AIVAGTIPTVEVVSK 464
            +V   I  VE +S+
Sbjct: 421 GLVDRAIKVVEQMSE 435



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 103/469 (21%), Positives = 188/469 (40%), Gaps = 88/469 (18%)

Query: 85  KLVPNPTLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           K +P P +    ++  +C+  +  D+E  F  L      G  A    Y T++    ++G+
Sbjct: 92  KCLPLPVVPCNILIKRLCSGGRVADAERVFATL------GASATVVTYNTMVNGYCRAGR 145

Query: 143 VDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEM----------------- 180
           ++     +      PD   FN LI A    G V  A  V  +M                 
Sbjct: 146 IEDARRLISGMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLD 205

Query: 181 ----------------NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
                                  +PD +T   L+ A  N G VD A  +   +  +  K 
Sbjct: 206 ATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKP 265

Query: 225 TPEVYT---------------------IAINCCS--------------QTGDWEFACSVY 249
               YT                     +A N C+              Q G  + A  V 
Sbjct: 266 DAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVV 325

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           D M++ G IPD V  S+++D     G+V+ A E+L   K+ G     I+Y++++    + 
Sbjct: 326 DHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSI 385

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
           + W+ A EL   M      P   T N +I +LC    + + ++V+  M   G  P+ +TY
Sbjct: 386 EQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTY 445

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLS 427
           + ++     +  ++  + LLS  +  G  P++V F  ++ G+CS  R+E A  L  +++ 
Sbjct: 446 NSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMM- 504

Query: 428 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL--QLPYN 474
            +S  P     + ++   + ++ ++   I T++++++  GC+  Q  YN
Sbjct: 505 -HSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAEN-GCIPNQSTYN 551



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/432 (21%), Positives = 172/432 (39%), Gaps = 55/432 (12%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI     +G + E +++L D+   G       Y     ++C S++  +    F ++
Sbjct: 234 TYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEM 293

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             N   P   TFN +++        + A +V+  + E G   D   Y++++      G+V
Sbjct: 294 ASNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRV 353

Query: 144 DAMFE-------------------------------------------NVKPDRVVFNAL 160
           D   E                                           +  PD V FN +
Sbjct: 354 DDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTV 413

Query: 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220
           I +  Q G VDRA  V+ +M+   +  +PD +T  +++    N   +D A E+   +  Y
Sbjct: 414 IASLCQKGLVDRAIKVVEQMSE--NGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSY 471

Query: 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
             K     +   +        WE A  +  +M      PD    + +I      G +  A
Sbjct: 472 GCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQA 531

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
            E L+     G      +Y+ ++ A   A   Q+AL+L   M +    P + T N +I+ 
Sbjct: 532 IETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNGT--PDLITYNTVISN 589

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           +    ++ + +++L  M S GL P+TITY  L     R+D  +  + +L + ++ G+ P+
Sbjct: 590 ITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPD 649

Query: 401 LVMFKCI-IGMC 411
              +  I +G C
Sbjct: 650 ATFYNDILLGFC 661



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 140/350 (40%), Gaps = 19/350 (5%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           GR+ + ++LL  ++  G       Y      +C  ++         ++V +   P   TF
Sbjct: 351 GRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTF 410

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           N +++        + A +V+  + E G   D   Y ++I        +D   E       
Sbjct: 411 NTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQS 470

Query: 149 -NVKPDRVVFNALITA-CGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAG 205
              KPD V FN L+   C    +VDR  D    M   +H    PD  T   ++ +    G
Sbjct: 471 YGCKPDIVTFNTLLKGLC----SVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKG 526

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            + +A E  K++ +         Y I ++   + G  + A  +   MT     PD +  +
Sbjct: 527 LLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLITYN 584

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            +I     AGK+E A ++L+   + G+S   I+Y SL           +A+ +   ++ +
Sbjct: 585 TVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDM 644

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            L P  +  N ++   C   +    ++  + M S G  P+  TY ILL A
Sbjct: 645 GLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEA 694



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 135/304 (44%), Gaps = 26/304 (8%)

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +AIK   +  +   NP + T+N ++    + +  + A ++L  +Q  G K D   + TL
Sbjct: 424 DRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTL 483

Query: 134 IT-TC-------AKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEM--NAE 183
           +   C       A+   V+ M  +  PD   FN +IT+  Q G + +A + L  M  N  
Sbjct: 484 LKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGC 543

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGD 241
           +      +I + AL+KA        + +E  K++      GTP++  Y   I+  ++ G 
Sbjct: 544 IPNQSTYNIVVDALLKA-------GKTQEALKLLSGMT-NGTPDLITYNTVISNITKAGK 595

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            E A  +   M   G+ PD +   +L          + A  +L   ++ G+S     Y+ 
Sbjct: 596 MEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYND 655

Query: 302 -LMGACSNAKNWQK--ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
            L+G C   +NW+   A++ + HM S    P  ST   L+ AL     L +  ++L ++ 
Sbjct: 656 ILLGFC---QNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLC 712

Query: 359 SLGL 362
           SLG+
Sbjct: 713 SLGV 716


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 166/345 (48%), Gaps = 12/345 (3%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
           T S +N L+     +  ++ A  V R++ ++GL+ D   +  L+    K+ +VD+++   
Sbjct: 88  TASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLF 147

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                +N  P+ + ++ LI A  + G V++A  V  +M +      P+  T  +++    
Sbjct: 148 EEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKS--RGCRPNIFTYTSMIDGLG 205

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            +G VD+A  +++ +    +  T  VY   I+   ++G  + A  ++ +M  KG+ PD V
Sbjct: 206 KSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHV 265

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             ++L+   G AG+   A  I QEA++ G ++ +  Y+ L+     +K   +A E++  +
Sbjct: 266 TFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGEL 325

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           +   L P V T NAL+  LC   ++     +L DMK  G  P+   Y+ L+    +   V
Sbjct: 326 EEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRV 385

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 425
           E    LL + +  G  P++V +  +I    +  R E A  L E +
Sbjct: 386 EEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEI 430



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 187/407 (45%), Gaps = 24/407 (5%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
            H  +    +YN LI    + G   + + +   M + GL      ++    N  K  K +
Sbjct: 82  GHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNV-LMNAFKKAKRV 140

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
              ++ F+ + N    P + T+++L+         E A +V   ++  G + +   YT++
Sbjct: 141 DSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSM 200

Query: 134 ITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I    KSG VD  F        E +   RVV+N+LI   G+SG  D A  +  EM ++  
Sbjct: 201 IDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSK-- 258

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + PDH+T  +L+     AG+   AR +++            +Y + I+   ++   + A
Sbjct: 259 GLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEA 318

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             ++ ++ + G++PD    +AL+D    +G++  AF +L + K  G +  +  Y++L+  
Sbjct: 319 WEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDG 378

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
              +   ++A +L   M+S+  +P V T N LI   C G ++   + +  ++ + G   N
Sbjct: 379 LRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGF-AN 437

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKE---DGVI-PNLVMFKCII 408
           T+TY+ +L        V+    L +  K+   DGVI P+ V +  ++
Sbjct: 438 TVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPDFVTYTTLL 484



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 106/230 (46%), Gaps = 3/230 (1%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L +  A+AG ++++ E  K +  +    T   Y   I+   + G  + A +VY  M + G
Sbjct: 60  LARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSG 119

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD    + L++    A +V++ +++ +E +NQ  S  +I+YS L+ A       +KAL
Sbjct: 120 LRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKAL 179

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +++  MKS   +P + T  ++I  L     + K   +  +M S GL    + Y+ L+   
Sbjct: 180 KVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGL 239

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNE 423
            R    +    L  +    G+ P+ V F  ++   G+  R  E  R   E
Sbjct: 240 GRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQE 289


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 194/410 (47%), Gaps = 37/410 (9%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK---SQKAIKEA 80
           V++ LH +++L+ QG                 +  D+V +    N VCK   ++ AIK  
Sbjct: 145 VNKALHFHDKLLAQG-----------------IKFDQVSYGTLINGVCKIGDTRGAIKLV 187

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +    +  P +  +N ++      +    A+ +   +   G+ AD   YTTLI     +
Sbjct: 188 RKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIA 247

Query: 141 GKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            K+        + + + + P+   +N L+ A  + G V  A +VLA M      V PD I
Sbjct: 248 SKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKAC--VKPDVI 305

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYD 250
           T   LM       ++ +A+ V+  +    +  TP+V  YTI IN   +    + A +++ 
Sbjct: 306 TYSTLMDGYFLVYELKKAQHVFNAMSLMGV--TPDVHSYTILINGFCKNKMVDEALNLFK 363

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNA 309
           +M +K ++P  V  S+LID    +G++   ++++ E +++GI   +I+Y+SL+ G C N 
Sbjct: 364 EMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNG 423

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
            +  +A+ L+  MK   ++P   T   L+  LC G +L    E   D+ + G   +   Y
Sbjct: 424 -HLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKY 482

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
           ++++    ++  +E  L +LS+ +E+G +PN V F  II    ++ E  +
Sbjct: 483 NVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINALFKKDENDK 532



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 161/388 (41%), Gaps = 39/388 (10%)

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
            + ++PD +  N LI      G +   F VLA++    +   P  IT   L+K     GQ
Sbjct: 87  LKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGY--QPHTITFTTLIKGLCLKGQ 144

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           V++A   +  +    IK     Y   IN   + GD   A  +   +  +   P+    + 
Sbjct: 145 VNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNT 204

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           +ID       V  A+ +  E   +GIS  +++Y++L+     A   ++A+ L   M    
Sbjct: 205 IIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKT 264

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           + P V T N L+ ALC   ++ +   VL+ M    + P+ ITYS L+       +++   
Sbjct: 265 INPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQ 324

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM 445
            + +     GV P++  +  +I G C                        +NK    AL 
Sbjct: 325 HVFNAMSLMGVTPDVHSYTILINGFC------------------------KNKMVDEALN 360

Query: 446 VYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLI 501
           +++E      +P +   S ++  L    ++ Y  D+ + +  + G+ A+ +  +   SLI
Sbjct: 361 LFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEM-RDRGIPANVITYN---SLI 416

Query: 502 DGF---GEYDPRAFSLLEEAASFGIVPC 526
           DG    G  D RA +L  +    GI PC
Sbjct: 417 DGLCKNGHLD-RAIALFNKMKDQGIRPC 443



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 128/317 (40%), Gaps = 19/317 (5%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +S  + +Y  LI       ++ E I LL +M  K +      Y+     +CK  K +
Sbjct: 227 AKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGK-V 285

Query: 78  KEAFR----FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           KEA        K    P + T++ LM       + + A  V   +   G+  D   YT L
Sbjct: 286 KEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLMGVTPDVHSYTIL 345

Query: 134 ITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I    K+  VD           +N+ P  V +++LI    +SG +   +D++ EM     
Sbjct: 346 INGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGI 405

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
           P +   IT  +L+      G +DRA  ++  +    I+     +TI ++   + G  + A
Sbjct: 406 PANV--ITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDA 463

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
              + D+  KG   D    + +I+     G +E A  +L + +  G     +++  ++ A
Sbjct: 464 QEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINA 523

Query: 306 CSNAKNWQKALELYEHM 322
                   KA +L   M
Sbjct: 524 LFKKDENDKAEKLLRQM 540



 Score = 42.7 bits (99), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           II ++ ++ + +  K++  A+ L   ++   ++P + T+N LI   C   Q+     VL+
Sbjct: 59  IIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLA 118

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            +   G  P+TIT++ L+     K  V   L    +    G+  + V +  +I G+C
Sbjct: 119 KILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVC 175


>gi|298708556|emb|CBJ30641.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 520

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 153/342 (44%), Gaps = 19/342 (5%)

Query: 97  MLMSVCASSKDSEGAFQVLR-----LVQEAG--LKADCKLYTTLITTCAKSG---KVDAM 146
           +L   CA   + + A  +L       V E G  L+AD   +   I    + G   K  A+
Sbjct: 7   LLCQSCAEVAEWQTALDLLAELRAGQVTEGGEPLEADTVSFNATINALGRGGEWKKAVAL 66

Query: 147 FE-------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                     VKP+ + +N+ I ACG+ G  + A  +L EM     P  PD I+ GA+  
Sbjct: 67  LREMTRAGLGVKPNEISYNSAIHACGRGGQWELALSLLKEMRELGLP--PDRISFGAMAN 124

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A   AG+     E+ + +       T   +  A++CCS+ G+W  + ++   M   G  P
Sbjct: 125 ALGTAGKWPLLLELLEEMKADGNPPTDVAFKAAVDCCSKAGEWRHSVALIKAMRAAGYPP 184

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
             + LS++I   G  G+ E A  +L E +  G S     Y +   AC+ A  W++A  L 
Sbjct: 185 TVLSLSSVISACGRGGRWEVALALLHETRKYGPSASASVYVATAQACARAGKWEEATNLM 244

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E MK   ++ T     AL+ A  +G +  KT++   +MK +GL P   +Y+  + AC + 
Sbjct: 245 EMMKVDGVRATEKFYMALLRATGEGGRTDKTLDFFEEMKEIGLKPGVRSYNCAVGACGKA 304

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
              E  + LL++  E+G+ P        I  CS   E  + L
Sbjct: 305 GSWEGAMKLLTEMHEEGMRPAGFAVAATIRACSSAGEWRKGL 346



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/410 (21%), Positives = 160/410 (39%), Gaps = 49/410 (11%)

Query: 31  SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP 90
           + N L R G   + + LL +M R GL                    +K           P
Sbjct: 50  TINALGRGGEWKKAVALLREMTRAGL-------------------GVK-----------P 79

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
              ++N  +  C      E A  +L+ ++E GL  D   +  +      +GK   +    
Sbjct: 80  NEISYNSAIHACGRGGQWELALSLLKEMRELGLPPDRISFGAMANALGTAGKWPLLLELL 139

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                +   P  V F A +  C ++G    +  ++  M A  +P  P  +++ +++ AC 
Sbjct: 140 EEMKADGNPPTDVAFKAAVDCCSKAGEWRHSVALIKAMRAAGYP--PTVLSLSSVISACG 197

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G+ + A  +     KY    +  VY      C++ G WE A ++ + M   GV   E 
Sbjct: 198 RGGRWEVALALLHETRKYGPSASASVYVATAQACARAGKWEEATNLMEMMKVDGVRATEK 257

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
           F  AL+   G  G+ +   +  +E K  G+  G+ SY+  +GAC  A +W+ A++L   M
Sbjct: 258 FYMALLRATGEGGRTDKTLDFFEEMKEIGLKPGVRSYNCAVGACGKAGSWEGAMKLLTEM 317

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDD 381
               ++P    + A I A     +  K +EVL   + +    P+  +    +  C R   
Sbjct: 318 HEEGMRPAGFAVAATIRACSSAGEWRKGLEVLRQSQQVKPSKPDPCSLGAAVEMCCRAGK 377

Query: 382 VEVGLMLL--------SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 423
           ++    +L        ++  +  +   + +F   IG    R E A   NE
Sbjct: 378 LDHARAILPHLTALAGNEGADAWIRETMGIFNACIGDLEAREEPAVNGNE 427


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1113

 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 169/347 (48%), Gaps = 14/347 (4%)

Query: 70   VCKSQKAI--KEAF-RFFK-LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            +CK ++A+  +  F RF K L   PTL ++N L+       + E A+ +   ++ AG   
Sbjct: 764  LCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAP 823

Query: 126  DCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVL 177
            D   Y  L+    KSGK++ +FE        + KP+ +  N +I    +S ++D+A D+ 
Sbjct: 824  DVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLF 883

Query: 178  AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
             ++ +      P   T G L+     +G+++ A+E+++ +  Y  +    +Y I IN   
Sbjct: 884  YDLVS--GDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFG 941

Query: 238  QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
            +TGD   AC ++  M ++G+ PD    ++L+     AG+V+ A    ++ K  G+ +  I
Sbjct: 942  KTGDVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSI 1001

Query: 298  SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
            +Y+ ++     +   ++AL LY+ M+S  + P + T N+LI  L     + +  ++  ++
Sbjct: 1002 AYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGVAGMVEQAGKLYEEL 1061

Query: 358  KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            + +GL PN  TY+ L+       + +    +  +    G  PN   F
Sbjct: 1062 QFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTF 1108



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/484 (22%), Positives = 199/484 (41%), Gaps = 69/484 (14%)

Query: 10  QFPYPNGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA 65
           Q P+  GK       ++   +SYN LI    + G   E +++   M  +GL    K + A
Sbjct: 177 QTPFAFGKMREAGFHLNA--YSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSA 234

Query: 66  RFFNVCKSQ-----KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
                 K +     K++ E      L PN  + T+ + + V   +   + A ++++ +++
Sbjct: 235 LMVATGKRRDTETVKSLLEEMESLGLKPN--IYTYTICIRVLGRAGRIDEACRIMKRMED 292

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDR 172
            G   D   YT LI     +GK+D   E        + KPDRV +  ++      G + R
Sbjct: 293 DGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGR 352

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
             +  +EM A+ +   PD IT   L+ A   AG +D A  +  ++ K  +      Y   
Sbjct: 353 VKEFWSEMEADGYA--PDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTL 410

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           I+   +    + A  ++++M   GV+P        IDF G +G+ + A E  ++ K +GI
Sbjct: 411 ISGLLRVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGI 470

Query: 293 SVGI-----------------------------------ISYSSLMGACSNAKNWQKALE 317
           +  I                                   ++Y+ +M   S A    +A+E
Sbjct: 471 APNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIE 530

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L   M   + +P +  +N+LI  L    ++ +  ++   +K + L P  +TY+ L+    
Sbjct: 531 LLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLG 590

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE---------KARTLN--EHVL 426
           ++  V+  + L +    +G  PN + F  I+    +  E         K  T+N    VL
Sbjct: 591 KEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVL 650

Query: 427 SFNS 430
           +FN+
Sbjct: 651 TFNT 654



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 163/383 (42%), Gaps = 13/383 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           R GRI E   +++ ME  G       Y      +C + K       F K+  +   P   
Sbjct: 276 RAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKMKASSHKPDRV 335

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF------ 147
           T+  ++   +   D     +    ++  G   D   +T L+    K+G +D  F      
Sbjct: 336 TYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVM 395

Query: 148 --ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             + V P+   +N LI+   +   +D A D+   M  E   V P   T    +     +G
Sbjct: 396 RKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNM--ETLGVVPTAYTYILFIDFYGKSG 453

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           + D+A E ++ +    I         ++   ++ G    A  +++ +   G+ PD V  +
Sbjct: 454 RSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKVIFNRLKSNGLAPDSVTYN 513

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            ++     AG+V+ A E+L +         II  +SL+     A    +A +++  +K +
Sbjct: 514 MMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDM 573

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           KL PTV T N LI  L    Q+ + ME+ + M   G  PNTIT++ +L    + D+V++ 
Sbjct: 574 KLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLA 633

Query: 386 LMLLSQAKEDGVIPNLVMFKCII 408
           L +L +      +P+++ F  II
Sbjct: 634 LKMLYKMTTMNCMPDVLTFNTII 656



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 66/313 (21%), Positives = 151/313 (48%), Gaps = 10/313 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P + TF +L++    + + + AF +L ++++ G+  +   Y TLI+   +  ++D    +
Sbjct: 367 PDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDL 426

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F N     V P    +   I   G+SG  D+A +   +M  ++  + P+ +   A + + 
Sbjct: 427 FNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKM--KIRGIAPNIVACNASLYSL 484

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A  G++  A+ ++  +    +      Y + + C S+ G  + A  +  DM++    PD 
Sbjct: 485 AEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDI 544

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           + +++LI+    AG+V+ A+++    K+  ++  +++Y++L+         Q+A+EL+  
Sbjct: 545 IVINSLINTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGLGKEGQVQRAMELFAS 604

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M      P   T N ++  LC  D++   +++L  M ++   P+ +T++ ++     +  
Sbjct: 605 MTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGLVIEKR 664

Query: 382 VEVGLMLLSQAKE 394
           V   + L  Q K+
Sbjct: 665 VSDAIWLFHQMKK 677



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 154/355 (43%), Gaps = 19/355 (5%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAMFE-- 148
           ++N L+ +   S     A ++ R +   GLK   K ++ L+    K   +  V ++ E  
Sbjct: 196 SYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALMVATGKRRDTETVKSLLEEM 255

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               +KP+   +   I   G++G +D A  ++  M  E     PD +T   L+ A   AG
Sbjct: 256 ESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRM--EDDGCGPDVVTYTVLIDALCTAG 313

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++D A E++  +   + K     Y   ++  S  GD       + +M   G  PD +  +
Sbjct: 314 KLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFT 373

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L++    AG ++ AF +L   + QG+   + +Y++L+           AL+L+ +M+++
Sbjct: 374 ILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETL 433

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + PT  T    I       +  K +E    MK  G+ PN +  +  L +      +   
Sbjct: 434 GVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREA 493

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV-----LSFNSGRPQI 435
            ++ ++ K +G+ P+ V +     M  + Y KA  ++E +     +S N   P I
Sbjct: 494 KVIFNRLKSNGLAPDSVTYN----MMMKCYSKAGQVDEAIELLSDMSENQCEPDI 544



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 160/396 (40%), Gaps = 20/396 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRF 83
           +YN LI    ++G++   ++L   M   G       ++     +CK+ +   A+K  ++ 
Sbjct: 581 TYNTLIAGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKM 640

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             +   P + TFN ++      K    A  +   +++  L  DC    TL+    K+G +
Sbjct: 641 TTMNCMPDVLTFNTIIHGLVIEKRVSDAIWLFHQMKKM-LTPDCVTLCTLLPGVVKNGLM 699

Query: 144 DAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +  F+          V  DR  +  L+         ++   +L         V  D   +
Sbjct: 700 EDAFKIAEDFVHRLGVYVDRRFWEDLMGGILTQAGTEKT--ILFGDRLVCGRVCKDGSVL 757

Query: 195 GALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             ++K      Q   A+ V+ +   +  +K T E Y   I       + E A +++ +M 
Sbjct: 758 MPIIKVLCKHKQALVAQSVFIRFTKELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMK 817

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
             G  PD    + L+D  G +GK+   FE+ ++          I+++ ++     + +  
Sbjct: 818 NAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLD 877

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KAL+L+  + S    PT  T   L+  L    +L +  E+  +M   G  PN   Y+IL+
Sbjct: 878 KALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILI 937

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
               +  DV     L  +   +G+ P+L  +  ++G
Sbjct: 938 NGFGKTGDVNTACELFKRMVREGIRPDLKSYTSLVG 973


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 107/419 (25%), Positives = 190/419 (45%), Gaps = 25/419 (5%)

Query: 25   VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AI 77
            V   + +YN L+    + GRI E    LE+M   G +     Y +  + +C++ +   A+
Sbjct: 633  VPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDAL 692

Query: 78   KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
            +          +P   T+N+L+     S  +E A  VL  +   G   D   Y TLI + 
Sbjct: 693  QLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSL 752

Query: 138  AKSGKVDA-------MFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
             K+G ++        M   V     P+ V ++ LI    + G +D A +++ EM  +   
Sbjct: 753  CKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCD 812

Query: 187  VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEF 244
            V P+ IT  + +        +  A E+ + +   +++ +P+  T +  I+   + G  + 
Sbjct: 813  VLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDE 872

Query: 245  ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
            AC+V+DDM   G +P+ V  + L++      K+E A  +++   ++G++  +I+YS L+ 
Sbjct: 873  ACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVD 932

Query: 305  ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK-SLGLC 363
            A   A +  +ALEL   M S    P V T N++I  LC  DQ  +  ++  DM    GL 
Sbjct: 933  AFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLA 992

Query: 364  PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
            P+ ITY  L+    R        +LL    +    P+   F C I   S+  + +R L+
Sbjct: 993  PDKITYCTLIDGLFRTGWAGQAEVLLDAMPD----PDTYAFNCCINGLSKLGDVSRALH 1047



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 192/403 (47%), Gaps = 22/403 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L + G+I E   + +DM   G +     Y+A    +CK+ K  +       +V     P 
Sbjct: 370 LCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPD 429

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---GKVDAMF 147
           + T+++L+ + C +S+  E A ++L  +   G   +   + ++I    KS   G+   MF
Sbjct: 430 VITYSVLVDAFCKASRVDE-ALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMF 488

Query: 148 ENVK------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +++       PD++ +  LI    ++G   +A  +L  M       DPD       +   
Sbjct: 489 DDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMP------DPDTYAFNCCINGL 542

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           +  G V RA +VY  + +  +      + I I    + G++E A +++++M  K + PD 
Sbjct: 543 SKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDV 602

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +   ALID    AG+VEAA +IL    N G+   +++Y++L+     +   ++A +  E 
Sbjct: 603 MTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEE 662

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S    P   T  +L+ ALC   +    ++++S++KS G  P+T+TY+IL+    +   
Sbjct: 663 MVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQ 722

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLN 422
            E  + +L +    G  P++V +  +I  +C +   E+AR L+
Sbjct: 723 TEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLH 765



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 136/557 (24%), Positives = 241/557 (43%), Gaps = 66/557 (11%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  + +Y+ L+    +  R+ E ++LL  M  +G       +++    +CKS ++  EA
Sbjct: 426 VTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRS-GEA 484

Query: 81  FRFFK-------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKA----DCK 128
           F+ F        LVP+    T+  L+         +G F+  R  Q EA L A    D  
Sbjct: 485 FQMFDDMALKHGLVPDKI--TYCTLI---------DGLFRTGRAGQAEALLDAMPDPDTY 533

Query: 129 LYTTLITTCAKSGKV-------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
            +   I   +K G V       + M E  + PD+V FN LI    ++G  ++A  +  EM
Sbjct: 534 AFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEM 593

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
            A+   + PD +T GAL+     AGQV+ AR++  ++    +      Y   ++   ++G
Sbjct: 594 VAK--NLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSG 651

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
             E AC   ++M   G +PD +   +L+     A + + A +++ E K+ G     ++Y+
Sbjct: 652 RIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYN 711

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS- 359
            L+     +   ++A+ + E M      P V T N LI +LC    L +   +  DM S 
Sbjct: 712 ILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSR 771

Query: 360 LGLC--PNTITYSILLVACERKDDVEVGLMLLSQA--KEDGVIPNLVMFKCII-GMCSRR 414
           +  C  PN +TYS+L+    +   ++    L+ +   K   V+PN++ +   + G+C + 
Sbjct: 772 VSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQS 831

Query: 415 Y-----EKARTLNEHVLSFNSGRPQIEN--------KWTSLALMVYREAIVAGTIPTVEV 461
                 E  R+L +  L  +                  T  A  V+ + I  G +P V  
Sbjct: 832 MMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVT 891

Query: 462 VSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGF--GEYDPRAFSLLE 516
            + ++  L      +    ++E++   GV+ D +  S    L+D F    +   A  LL 
Sbjct: 892 YNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYS---VLVDAFCKASHVDEALELLH 948

Query: 517 EAASFGIVP-CVSFKEI 532
             AS G  P  V+F  I
Sbjct: 949 GMASRGCTPNVVTFNSI 965



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/465 (25%), Positives = 204/465 (43%), Gaps = 37/465 (7%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           PT+ T+N +++    S +     ++   + E G   D   Y TLI +  K+G +      
Sbjct: 214 PTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRL 273

Query: 144 --DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             D    +  P+ V ++ LI    + G +D A +++ EM  +   V P+ IT  + +   
Sbjct: 274 HGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 333

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIP 259
                   A E+ + +   +++ +P+  T +  I+   + G  + ACSV+DDM   G +P
Sbjct: 334 CKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVP 393

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + +  +AL++    A K+E A  +++   ++G++  +I+YS L+ A   A    +ALEL 
Sbjct: 394 NVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELL 453

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK-SLGLCPNTITYSILLVACER 378
             M S    P V T N++I  LC  D+  +  ++  DM    GL P+ ITY  L+    R
Sbjct: 454 HGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDGLFR 513

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH-----------VLS 427
                    LL    +    P+   F C I   S+  + +R L  +            ++
Sbjct: 514 TGRAGQAEALLDAMPD----PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVT 569

Query: 428 FN---SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRER 480
           FN   +G  +  N   + AL  + E +     P V     ++  L    Q+    DI + 
Sbjct: 570 FNILIAGACKAGNFEQASAL--FEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILD- 626

Query: 481 LVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
           L+ NLGV  + +  + L   +   G  +  A   LEE  S G VP
Sbjct: 627 LMGNLGVPPNVVTYNALVHGLCKSGRIE-EACQFLEEMVSSGCVP 670



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 156/366 (42%), Gaps = 81/366 (22%)

Query: 33   NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
            N L + GRI E  +L+++M RK                               ++PN  +
Sbjct: 788  NGLCKVGRIDEARELIQEMMRKSC----------------------------DVLPN--I 817

Query: 93   STFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTCAKSGKVDA---M 146
             T+N  L  +C  S  +E A +++R +++  L+   D   ++TLI    K G+ D    +
Sbjct: 818  ITYNSFLDGLCKQSMMAE-ACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNV 876

Query: 147  FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            F+++      P+ V +N L+    ++  ++RA  ++  M  +   V PD IT   L+ A 
Sbjct: 877  FDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDK--GVTPDVITYSVLVDAF 934

Query: 202  ANAGQVDRAREVYKMIHKYNIKG-TPEVYT---IAINCCSQTGDWEFACSVYDDMT-KKG 256
              A  VD A E   ++H    +G TP V T   I    C      E A  ++DDMT K G
Sbjct: 935  CKASHVDEALE---LLHGMASRGCTPNVVTFNSIIDGLCKSDQSGE-AFQMFDDMTLKHG 990

Query: 257  VIPDEVFLSALID---FAGHAGKVEAAFEILQEAKNQGISVGI----------------- 296
            + PD++    LID     G AG+ E   + + +      +  I                 
Sbjct: 991  LAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRML 1050

Query: 297  --------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
                    ++++ L+     A N+++A  L+E M +  L+P V T  ALI  LC   Q+ 
Sbjct: 1051 ELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVE 1110

Query: 349  KTMEVL 354
             T +++
Sbjct: 1111 ATWDIM 1116



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 171/394 (43%), Gaps = 54/394 (13%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYK 215
           FN  +    +SG+  +A D+     + + P   P+H T   L++A   AG  D  R +  
Sbjct: 114 FNKYLNLLVKSGSPAKAIDLF---RSRLPPRCRPNHFTYSTLLRATYKAGG-DVERTLGF 169

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY-DDMTKKGVIPDEVFLSALIDFAGHA 274
                +   +   Y I +    + G+   A  ++  +M + GV P  V  + +I+    +
Sbjct: 170 FRRIRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKS 229

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
            ++ A  E+ +E   +G    +++Y++L+ +   A + ++A  L+  M S    P V T 
Sbjct: 230 NELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTY 289

Query: 335 NALITALCDGDQLPKTMEVLSDM--KSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQ 391
           + LI  LC   ++ +  E++ +M  KS  + PN ITY+  L   C++    E   ++  +
Sbjct: 290 SVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELM--R 347

Query: 392 AKEDG---VIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVY 447
           +  DG   V P+ V F  +I G+C     K   ++E                   A  V+
Sbjct: 348 SLRDGSLRVSPDTVTFSTLIDGLC-----KCGQIDE-------------------ACSVF 383

Query: 448 REAIVAGTIPTVEVVSKVLGCLQLPYNADIRER---LVENL---GVSADALKRSNLCSLI 501
            + I  G +P V   + ++  L     AD  ER   ++E++   GV+ D +  S    L+
Sbjct: 384 DDMIAGGYVPNVITYNALVNGL---CKADKMERAHAMIESMVDKGVTPDVITYS---VLV 437

Query: 502 DGFGEYD--PRAFSLLEEAASFGIVP-CVSFKEI 532
           D F +      A  LL   AS G  P  V+F  I
Sbjct: 438 DAFCKASRVDEALELLHGMASRGCTPNVVTFNSI 471


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 174/384 (45%), Gaps = 15/384 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPTL 92
           R+  + +   L E+M RKG+L       A    +CK  +   EA+  F    K+   P  
Sbjct: 256 RRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGR-FSEAYALFREMEKIGAAPNH 314

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-------- 144
            T+ ML+   A ++    +  +L  V   G+  D  +YT L+    K GK+D        
Sbjct: 315 VTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRH 374

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           A+ +N  P+ V +  LI A  ++G VD A  VL+EM  E   + P+ +T  +++      
Sbjct: 375 ALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEM--EEKSISPNVVTFSSIINGLVKR 432

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G V +A +  + + +  I      Y   I+   +    E A  VY +M  +GV  ++  +
Sbjct: 433 GWVGKATDYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIV 492

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
            +L++     GK+E A  + +E   +G+ +  ++Y++L+       N   A ++ + +  
Sbjct: 493 DSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTE 552

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             L P     N  I  LC   +  +    L +M+S GL P+ +TY+ ++ A  R+     
Sbjct: 553 KNLLPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAK 612

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII 408
            L LL+  K   + PNL+ +  +I
Sbjct: 613 ALKLLNGMKRSSIKPNLITYSTLI 636



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/433 (22%), Positives = 182/433 (42%), Gaps = 56/433 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G+I +   L  +M  +G+L +D V +    +       +  AF+  + +     
Sbjct: 497 NGLKKNGKIEKAEALFREMNERGVL-LDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNL 555

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P    +N+ ++       S+ A   L  +Q  GLK D   Y T+I   ++ GK     +
Sbjct: 556 LPDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALK 615

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                   ++KP+ + ++ LI    ++GAV++A  +L EM++      P  +T   +++A
Sbjct: 616 LLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSS--GFSPTSLTHRRVLQA 673

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           C+   + D   E+++ +    +     VY   +      G    A  V ++M+ +G+ PD
Sbjct: 674 CSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPD 733

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA----------- 309
            +  +ALI     +G ++ AF    +    GIS  + ++++L+G   +A           
Sbjct: 734 TITFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLN 793

Query: 310 ------------------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
                                    N  +A+ LY  M      P VST NALI+      
Sbjct: 794 EMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVG 853

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVIPNLVMF 404
            + +  E+ ++M++ G+ P + TY IL+    + ++  EV    L   KE G  P+    
Sbjct: 854 MMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEV-RKFLKDMKEKGFSPS---- 908

Query: 405 KCIIGMCSRRYEK 417
           K  +   SR + K
Sbjct: 909 KGTLSSISRAFSK 921



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 179/390 (45%), Gaps = 22/390 (5%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D V +N+L+    + G ++ AF V   M A+   V  D +   +L+     AG+VD AR+
Sbjct: 173 DVVGWNSLVDGYCKVGDMETAFAVAERMKAQ--GVGVDVVGYNSLVAGLCRAGEVDAARD 230

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           +   + +  ++     YT+ I    +    + A S+Y++M +KGV+PD V LSAL+    
Sbjct: 231 MVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLC 290

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
             G+   A+ + +E +  G +   ++Y  L+   + A+   ++L L   + S  +   + 
Sbjct: 291 KDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLI 350

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
              AL+  LC   ++ +  ++     S    PN +TY++L+ A  +  +V+    +LS+ 
Sbjct: 351 MYTALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEM 410

Query: 393 KEDGVIPNLVMFKCII-GMCSR----------RYEKARTLNEHVLSFNSGRPQIENKWTS 441
           +E  + PN+V F  II G+  R          R  K R ++ +V+++ +    I+  +  
Sbjct: 411 EEKSISPNVVTFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGT---VIDGSFKC 467

Query: 442 L----ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 497
           L    AL VY E +  G      +V  ++  L+     +  E L   +      L   N 
Sbjct: 468 LGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVNY 527

Query: 498 CSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
            +LIDG  +    P AF + +E     ++P
Sbjct: 528 TTLIDGLFKTGNLPAAFKVGQELTEKNLLP 557



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 106/477 (22%), Positives = 190/477 (39%), Gaps = 90/477 (18%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFK--LVPN 89
           + L +  R +E + LL ++  +G++ MD + +    + +CK  K I EA   F+  L  N
Sbjct: 322 DTLAKAQRGNESLSLLGEVVSRGVV-MDLIMYTALMDWLCKEGK-IDEAKDMFRHALSDN 379

Query: 90  --PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
             P   T+ +L+     + + +GA QVL  ++E  +  +   ++++I    K G V    
Sbjct: 380 HTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKAT 439

Query: 144 ----------------------DAMF-----------------ENVKPDRVVFNALITAC 164
                                 D  F                 E V+ ++ + ++L+   
Sbjct: 440 DYMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGL 499

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
            ++G +++A  +  EMN     V  DH+    L+      G +  A +V + + + N+  
Sbjct: 500 KKNGKIEKAEALFREMNE--RGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLP 557

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
              VY + INC    G  + A S  ++M   G+ PD+V  + +I      GK   A ++L
Sbjct: 558 DAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLL 617

Query: 285 QEAKNQGISVGIISYSSL-----------------------------------MGACSNA 309
              K   I   +I+YS+L                                   + ACS  
Sbjct: 618 NGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQG 677

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
           +     LE++E M +  L   ++  N L+  LC      K M VL +M   G+ P+TIT+
Sbjct: 678 RRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITF 737

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRYEKARTLNE 423
           + L++   +   ++       Q    G+ PN+  F  ++G      R  E    LNE
Sbjct: 738 NALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNE 794



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 134/281 (47%), Gaps = 7/281 (2%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D V +N +++   + G +     +LAEM     P D   +T+  ++      G+VDRA  
Sbjct: 102 DTVSYNVVMSGFSEQGGLAPE-ALLAEMCKRGVPFDA--VTVNTVLVGLCRDGRVDRAAA 158

Query: 213 VYK-MIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           + + M+    I G   V +   ++   + GD E A +V + M  +GV  D V  ++L+  
Sbjct: 159 LAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAG 218

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
              AG+V+AA +++   K  G+   +++Y+  +           A  LYE M    + P 
Sbjct: 219 LCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPD 278

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           V T++AL+  LC   +  +   +  +M+ +G  PN +TY +L+    +       L LL 
Sbjct: 279 VVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLG 338

Query: 391 QAKEDGVIPNLVMFKCIIG-MCSR-RYEKARTLNEHVLSFN 429
           +    GV+ +L+M+  ++  +C   + ++A+ +  H LS N
Sbjct: 339 EVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDN 379



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 141/326 (43%), Gaps = 17/326 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    R+G+ ++ + LL  M+R  +      Y      + ++    K  +   ++
Sbjct: 596 TYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEM 655

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-- 141
             +   PT  T   ++  C+  + S+   ++   +  AGL AD  +Y TL+     +G  
Sbjct: 656 SSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMT 715

Query: 142 -KVDAMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            K   + E      + PD + FNALI    +SG +D AF    +M    H + P+  T  
Sbjct: 716 RKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQM--LYHGISPNVATFN 773

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            L+    +AG++  +  V   + K  I+ +   Y I +    +  +   A  +Y +M  K
Sbjct: 774 TLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGK 833

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G +P     +ALI      G +  A E+  E +N+G+     +Y  L+   S  +N  + 
Sbjct: 834 GFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYDILVSGWSKLRNGTEV 893

Query: 316 LELYEHMKSIKLKPTVSTMNALITAL 341
            +  + MK     P+  T++++  A 
Sbjct: 894 RKFLKDMKEKGFSPSKGTLSSISRAF 919


>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
 gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
          Length = 718

 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 156/332 (46%), Gaps = 11/332 (3%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------- 142
           T+  F+ ++S    S     A ++   +++ GLK +   Y  +I  C K G         
Sbjct: 111 TVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEI 170

Query: 143 VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M  N ++PDR+ FN+L+  C + G  + A  +  EM      +D D  T   L+ A 
Sbjct: 171 FDEMLRNGMQPDRITFNSLLAVCSKGGLWEAARSLSCEMVN--RGIDQDIFTYNTLLDAV 228

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              GQ+D A E+   +   NI      Y+  I+  ++ G  + A +++++M   G+  D 
Sbjct: 229 CKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDR 288

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L+      G+ E A ++ +E +N GI   +++Y++L+G       +    +++E 
Sbjct: 289 VSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEE 348

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK+  + P + T + LI     G    + M+V  + K  GL  + + YS L+ A  +   
Sbjct: 349 MKARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGL 408

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           VE  + LL +  ++G+ PN+V +  II    R
Sbjct: 409 VESAVSLLDEMTKEGIRPNVVTYNSIIDAFGR 440



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 152/318 (47%), Gaps = 15/318 (4%)

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTL 133
           EA + F  + +    P L T+N ++  C     + +   ++   +   G++ D   + +L
Sbjct: 130 EAIKIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSL 189

Query: 134 ITTCAKSGKVDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +  C+K G  +A        +   +  D   +N L+ A  + G +D AF++++EM A+  
Sbjct: 190 LAVCSKGGLWEAARSLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAK-- 247

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + P+ +T   ++   A AG++D AR ++  +    I      Y   ++  ++ G +E A
Sbjct: 248 NILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEA 307

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             V  +M   G+  D V  +AL+   G   K +   ++ +E K + +S  +++YS+L+  
Sbjct: 308 MDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYSTLIDV 367

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
            S    +++A++++   K   LK  V   +ALI ALC    +   + +L +M   G+ PN
Sbjct: 368 YSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSLLDEMTKEGIRPN 427

Query: 366 TITYSILLVACERKDDVE 383
            +TY+ ++ A  R    E
Sbjct: 428 VVTYNSIIDAFGRPATTE 445



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/340 (21%), Positives = 151/340 (44%), Gaps = 34/340 (10%)

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-NVKPDRV------VFNALIT 162
           G+   + L++E G + DCK             K    FE  VK +R       + +A+I+
Sbjct: 39  GSDDYVFLLRELGNRGDCK-------------KAICCFEFAVKRERKKNEQGKLASAMIS 85

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
             G+ G V+ A  V      E +          A++ A   +G  + A +++  +  Y +
Sbjct: 86  TLGRLGKVEMAKTVFKAALTEGYG--NTVYAFSAIISAYGRSGYCNEAIKIFYSMKDYGL 143

Query: 223 KGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           K     Y   I+ C + G +++    ++D+M + G+ PD +  ++L+      G  EAA 
Sbjct: 144 KPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCSKGGLWEAAR 203

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
            +  E  N+GI   I +Y++L+ A         A E+   M +  + P V T + +I   
Sbjct: 204 SLSCEMVNRGIDQDIFTYNTLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGY 263

Query: 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
               +L     + ++MK LG+  + ++Y+ LL    +    E  + +  + +  G+  ++
Sbjct: 264 AKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDV 323

Query: 402 VMFKCIIGMCSRRYE-----------KARTLNEHVLSFNS 430
           V +  ++G   ++Y+           KAR ++ ++L++++
Sbjct: 324 VTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLTYST 363



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 164/375 (43%), Gaps = 23/375 (6%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
           Y+     VCK  + +  AF     +P     P + T++ ++   A +   + A  +   +
Sbjct: 221 YNTLLDAVCKGGQ-LDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEM 279

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVD-AM-----FEN--VKPDRVVFNALITACGQSGAV 170
           +  G+  D   Y TL++  AK G+ + AM      EN  ++ D V +NAL+   G+    
Sbjct: 280 KFLGISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKY 339

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
           D    V  EM A    V P+ +T   L+   +  G    A +V++   K  +K    +Y+
Sbjct: 340 DVVRKVFEEMKA--RHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYS 397

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             I+   + G  E A S+ D+MTK+G+ P+ V  +++ID  G     E+  +     +  
Sbjct: 398 ALIDALCKNGLVESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTESVVD--DAGQTS 455

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
            + +  +S S++  A       +  +   E  + IK+   ++   A       G ++   
Sbjct: 456 ELQIDSLSSSAVEKAT------KSLVADREDNRIIKIFGQLAAEKAGQAKNSGGQEMMCI 509

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
           + V   M  L + PN +T+S +L AC R +  E   MLL + +        V    ++G 
Sbjct: 510 LGVFHKMHELEIKPNVVTFSAILNACSRCNSFEEASMLLEELRLFDNQVYGVAHGLLMGY 569

Query: 411 CSRRYEKARTLNEHV 425
               +E+A++L + V
Sbjct: 570 RENVWEQAQSLFDEV 584



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 141/330 (42%), Gaps = 35/330 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFF 84
           SYN L+    + GR  E +D+  +ME  G+      Y+A      K  K   +++ F   
Sbjct: 290 SYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEM 349

Query: 85  KLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           K    +P L T++ L+ V +       A  V R  ++AGLKAD  LY+ LI    K+G V
Sbjct: 350 KARHVSPNLLTYSTLIDVYSKGGLYREAMDVFREFKKAGLKADVVLYSALIDALCKNGLV 409

Query: 144 DAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           ++          E ++P+ V +N++I A G+    +   D   + +     +  D ++  
Sbjct: 410 ESAVSLLDEMTKEGIRPNVVTYNSIIDAFGRPATTESVVDDAGQTS----ELQIDSLSSS 465

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC--SVYDDMT 253
           A+ KA  +         + K+  +   +   +           +G  E  C   V+  M 
Sbjct: 466 AVEKATKSLVADREDNRIIKIFGQLAAEKAGQ--------AKNSGGQEMMCILGVFHKMH 517

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +  + P+ V  SA+++        E A  +L+E +     V  +++  LMG   N   W+
Sbjct: 518 ELEIKPNVVTFSAILNACSRCNSFEEASMLLEELRLFDNQVYGVAHGLLMGYRENV--WE 575

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCD 343
           +A  L++ +K +      ST +A   AL D
Sbjct: 576 QAQSLFDEVKLMD----SSTASAFYNALTD 601


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 181/395 (45%), Gaps = 22/395 (5%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFR 82
           ++Y  LIR    +GR+ + + LL+DM R+        Y      VCKS    +A+K    
Sbjct: 138 YTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDE 197

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCA--K 139
                  P + T+N++++        + A Q+L  +   G + D   YTT++   CA  +
Sbjct: 198 MRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKR 257

Query: 140 SGKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
              V+ +F      N  P+ V F+ L+    + G V+RA +VL  M+   H    +    
Sbjct: 258 WEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSE--HGCTANTTLC 315

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             ++ +    G+VD A E    +  Y        YT  +    + G WE A  + ++M +
Sbjct: 316 NIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVR 375

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           K   P+EV  +  I      G ++ A  ++++    G SVGI++Y++L+           
Sbjct: 376 KNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDS 435

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILL 373
           ALEL+    S+  +P   T   L+T LC  ++L    E+L++M     CP N +T+++L+
Sbjct: 436 ALELF---NSLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQ-NDCPLNVVTFNVLV 491

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
               +K  VE  + L+ Q  E G  PNL+ F  ++
Sbjct: 492 SFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLL 526



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 191/433 (44%), Gaps = 20/433 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + R+ R+ +   +L  +   G       Y      +C +++       F ++V N   
Sbjct: 215 NGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCV 274

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   TF+ML+         E A +VL  + E G  A+  L   +I +  K G+VD  FE 
Sbjct: 275 PNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEF 334

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                     PD + +  ++    ++G  + A ++L EM  +  P  P+ +T    +   
Sbjct: 335 LNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCP--PNEVTFNTFICIL 392

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G +D+A  + + + +Y        Y   +N     G  + A  +++ +  +   P+ 
Sbjct: 393 CQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCE---PNT 449

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + L+    HA +++AA E+L E       + +++++ L+         ++A+EL + 
Sbjct: 450 ITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQ 509

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M      P + T N L+  + +     + +E+L  + S G+  +TITYS ++    R+D 
Sbjct: 510 MMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDR 569

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN--EHVLSFNSGRPQIENKW 439
           +E  + +    ++ G+ P  VM+  I+    +R E  R ++   H++S NS  P  E+ +
Sbjct: 570 IEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVS-NSCMPN-ESTY 627

Query: 440 TSLALMVYREAIV 452
             L   + RE ++
Sbjct: 628 VILIEGLAREGLL 640



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 162/386 (41%), Gaps = 27/386 (6%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA---GLKADCKLYTTLITTCAKSGKVD 144
           P+P  S    L+   A    +E A    RLV+ +   G   D  L T LI    + G+  
Sbjct: 35  PSPASSRLRRLI---ARDDLAEAA----RLVERSTSRGEAPDVYLCTKLIRNLCRRGRTS 87

Query: 145 --------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                   A       D   +N L+    + G +D A  ++A M     PV PD  T   
Sbjct: 88  DAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRLIASM-----PVPPDAYTYTP 142

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L++   + G+V  A  +   + +   + +   YT+ +    ++  +  A  V D+M  KG
Sbjct: 143 LIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKG 202

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
             P+ V  + +I+      +V+ A +IL    + G     +SY++++     AK W+   
Sbjct: 203 CTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVE 262

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            L+  M      P   T + L+   C G  + + +EVL  M   G   NT   +I++ + 
Sbjct: 263 VLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSI 322

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQ 434
            ++  V+     L+     G  P+ + +  ++ G+C + R+E A+ L   ++  N   P 
Sbjct: 323 CKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNC--PP 380

Query: 435 IENKWTSLALMVYREAIVAGTIPTVE 460
            E  + +   ++ ++ ++   I  +E
Sbjct: 381 NEVTFNTFICILCQKGLIDQAILLIE 406



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/341 (20%), Positives = 142/341 (41%), Gaps = 16/341 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS------QKAIKEAFRFFKL 86
           N + +QGR+ +  + L +M   G       Y      +C++      ++ + E  R  K 
Sbjct: 320 NSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVR--KN 377

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
            P P   TFN  + +       + A  ++  + E G       Y  L+      G+VD+ 
Sbjct: 378 CP-PNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSA 436

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            E       +P+ + +  L+T    +  +D A ++LAEM     P++   +T   L+   
Sbjct: 437 LELFNSLPCEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNV--VTFNVLVSFF 494

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G V+ A E+ + + ++        +   ++  ++  + E A  +   +  KG+  D 
Sbjct: 495 CQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDT 554

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  S+++D      ++E A ++    ++ G+    + Y+ ++ A        +A++ + H
Sbjct: 555 ITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAH 614

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           M S    P  ST   LI  L     L +   VLS++ S G+
Sbjct: 615 MVSNSCMPNESTYVILIEGLAREGLLKEARYVLSELCSRGV 655


>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 148/304 (48%), Gaps = 23/304 (7%)

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALIT---ACGQSGAVD 171
           LR + +AG   DC      +  C            ++P  V F+ LI+   AC +    +
Sbjct: 101 LRALGDAGRIDDCVAAYEAMLAC-----------QLRPTIVTFSTLISRAGACRRVRLAE 149

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
           R F  + E       + PD   I +L+ A A AG  D+A +V+  + +Y +  TP V T 
Sbjct: 150 RFFREMLEAG-----ITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGV--TPSVITF 202

Query: 232 A--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
              I+ C + GD + A  V+  +++ G+ P++   SALI      G+V+ AF  LQE + 
Sbjct: 203 NTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRA 262

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           +G+    ++YS+L+ AC  A    +A +  + M    ++P V T   LI A   G +L  
Sbjct: 263 RGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEW 322

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           + ++  +M+  G  PN +T S L+ AC + D++++   +L    + G+ P  V +  ++ 
Sbjct: 323 SFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVTYTSLLT 382

Query: 410 MCSR 413
            C+R
Sbjct: 383 QCAR 386



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 126/258 (48%), Gaps = 10/258 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           PT+ TF+ L+S   + +    A +  R + EAG+  D +   +LI   AK+G  D   + 
Sbjct: 127 PTIVTFSTLISRAGACRRVRLAERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALKV 186

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V P  + FN LI ACG++G +DRA  V + ++     + P+  T  AL+ + 
Sbjct: 187 FDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLSQ--AGLSPNDRTFSALIHSH 244

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A  GQVD A    + +    ++     Y+  IN C + G    A    D+M   G+ P+ 
Sbjct: 245 AVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNV 304

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LID  G   ++E +F++ +E + +G     ++ S+LM AC  A     A  + EH
Sbjct: 305 VTWTTLIDACGKGKELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVLEH 364

Query: 322 MKSIKLKPTVSTMNALIT 339
           M  + ++PT  T  +L+T
Sbjct: 365 MLDVGIEPTEVTYTSLLT 382



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 122/257 (47%), Gaps = 8/257 (3%)

Query: 158 NALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAREVYKM 216
           N  + A G +G +D   D +A   A +   + P  +T   L+       +V  A   ++ 
Sbjct: 98  NVFLRALGDAGRID---DCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFRE 154

Query: 217 IHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           + +  I  TP+V  I   IN  ++ G  + A  V+D M++ GV P  +  + LID  G A
Sbjct: 155 MLEAGI--TPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRA 212

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G ++ A ++       G+S    ++S+L+ + +      +A    + M++  L+P   T 
Sbjct: 213 GDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTY 272

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           +ALI A     QL +  + L +M   G+ PN +T++ L+ AC +  ++E    L  + +E
Sbjct: 273 SALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEMRE 332

Query: 395 DGVIPNLVMFKCIIGMC 411
            G +PN V    ++  C
Sbjct: 333 RGTVPNGVTCSALMDAC 349



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 106/220 (48%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
            ++A  +AG++D     Y+ +    ++ T   ++  I+          A   + +M + G
Sbjct: 100 FLRALGDAGRIDDCVAAYEAMLACQLRPTIVTFSTLISRAGACRRVRLAERFFREMLEAG 159

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD   +++LI+    AG  + A ++  +    G++  +I++++L+ AC  A +  +A 
Sbjct: 160 ITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRAR 219

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +++  +    L P   T +ALI +     Q+ +    L +M++ GL PN +TYS L+ AC
Sbjct: 220 QVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINAC 279

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
            R   +      L +    G+ PN+V +  +I  C +  E
Sbjct: 280 GRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKE 319



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 41/207 (19%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P++ TFN L+  C  + D + A QV   + +AGL  + + ++ LI + A  G+VD  F  
Sbjct: 197 PSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQVDEAFSW 256

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHP--------VD---- 188
                   ++P+RV ++ALI ACG++G + RAF  L EM    + P        +D    
Sbjct: 257 LQEMRARGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGK 316

Query: 189 --------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                               P+ +T  ALM AC  A ++D A  V + +    I+ T   
Sbjct: 317 GKELEWSFKLFKEMRERGTVPNGVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTEVT 376

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKK 255
           YT  +  C++ G  + A  V D++ K+
Sbjct: 377 YTSLLTQCARLGQADRAGIVLDELNKR 403



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 17/200 (8%)

Query: 185 HPVDPDHITIGALMKACANAGQ-------VDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
           +P+ P   T  A+ +  A  G+         R R  ++M  K        + +  +    
Sbjct: 502 NPLPPPMATAEAITRGGATTGEGGSGETATARGRGAWRMNRK--------LESDLLQLFG 553

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE--AKNQGISVG 295
           Q    + A  V + M ++   PD      L++    AG ++ A E+++   A+  G  + 
Sbjct: 554 QADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMERSRAEGHGSEIN 613

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
            ++YS+L+GAC  AK   +A  + + M+   +KPT  T  AL+            +EV  
Sbjct: 614 ELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHSRDSKAAVEVFE 673

Query: 356 DMKSLGLCPNTITYSILLVA 375
            M++ G+ P   +Y+ LL A
Sbjct: 674 AMETEGVRPGVRSYTSLLKA 693



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 8/140 (5%)

Query: 128 KLYTTLITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAE 179
           KL + L+    ++ +VDA F+ ++        PD   +  L+ A   +GA+D+A +++  
Sbjct: 543 KLESDLLQLFGQADQVDAAFKVLEGMVERRDSPDGETWLLLLNAVDTAGALDKAVELMER 602

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
             AE H  + + +T  AL+ AC  A ++ RA  + + + +  +K T   Y   +  C  +
Sbjct: 603 SRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEGTYLALMEVCRHS 662

Query: 240 GDWEFACSVYDDMTKKGVIP 259
            D + A  V++ M  +GV P
Sbjct: 663 RDSKAAVEVFEAMETEGVRP 682



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 18/193 (9%)

Query: 112  FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK------------PDRVVFNA 159
            F V + ++  G++ D + Y  L+ TCA  G+ D     V+            PD V + +
Sbjct: 879  FLVFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTS 938

Query: 160  LITACGQS--GAVDRAFDVLAEMNAEVHPVD----PDHITIGALMKACANAGQVDRAREV 213
            LI A  ++    V+ A ++ A M    +       P  +T   LM+A   A    RA E+
Sbjct: 939  LIKAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEI 998

Query: 214  YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
            ++      +   P     A+  C   GD + A  VYD M + G+ P+   L  L++    
Sbjct: 999  WRQQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPNSRALLDLVNLCRA 1058

Query: 274  AGKVEAAFEILQE 286
             G    A  I++E
Sbjct: 1059 NGLQSVAARIMRE 1071



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 17/223 (7%)

Query: 213  VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY----DDMTKKGVIPDEVFLSALI 268
            V++ +    ++     Y   +N C+  G+++ A  V     DD    G+ PD V  ++LI
Sbjct: 881  VFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLI 940

Query: 269  DFAGHA--GKVEAAFEI---LQEAKNQGISVGI---ISYSSLMGACSNAKNWQKALELYE 320
              A  A   +VE A EI   +Q+  N   +      ++Y+ LM A   A+++ +ALE++ 
Sbjct: 941  KAAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALEIWR 1000

Query: 321  HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
               S  + P   +  A + A      +   ++V   M+  G+ PN+     L+  C    
Sbjct: 1001 QQLSAGVAPGPRSTRAALAACGGAGDVDTALQVYDVMREGGIRPNSRALLDLVNLCRANG 1060

Query: 381  DVEVGLMLLSQ-AKEDGVI----PNLVMFKCIIGMCSRRYEKA 418
               V   ++ + +K D        N+ M +   G  SR+  K+
Sbjct: 1061 LQSVAARIMRERSKTDATTNRRRSNVSMRRNSAGSTSRKRNKS 1103



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 5/101 (4%)

Query: 39  GRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLS 93
           G + + ++L+E    +G   +++++ ++     C   K +  AFR  + +      PT  
Sbjct: 591 GALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRETGVKPTEG 650

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           T+  LM VC  S+DS+ A +V   ++  G++   + YT+L+
Sbjct: 651 TYLALMEVCRHSRDSKAAVEVFEAMETEGVRPGVRSYTSLL 691


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 136/296 (45%), Gaps = 10/296 (3%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFENVKPDR---VV-----FNALITACGQSGAVDRAFDVL 177
           D   YTT+I+ C    ++    E V   R   VV     ++AL+  C ++  ++ A DV 
Sbjct: 72  DVYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVY 131

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            ++  E     P+ +T   L+      G    A +V   +     K     Y   ++ C+
Sbjct: 132 GQLLRE--GCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACN 189

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           ++G  E A  VY+ M   G  P     +ALI   G  GK+E A  I Q+   +G    +I
Sbjct: 190 RSGQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRRGCERNVI 249

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +YSSL+ AC  A  WQ ALEL + M     KP   T NAL++A   G Q     +V   M
Sbjct: 250 TYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQM 309

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            S G  P+ ++Y+IL+ A +R +     L  L + +  G  P++ ++  +I   +R
Sbjct: 310 PSCGCKPDAVSYAILISAFDRGNQWCRALQALDEMQGQGHRPDVGVYNVVIEALTR 365



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 142/329 (43%), Gaps = 54/329 (16%)

Query: 29  LHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF--- 81
           +++Y  +I Q     ++ + ++L+ +M   G++     Y A   NVC     ++ A    
Sbjct: 73  VYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSA-LMNVCIKANELELALDVY 131

Query: 82  -RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +  +    P L T+N+L+ +     + + A QVL  +++ G K + + Y T+++ C +S
Sbjct: 132 GQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRS 191

Query: 141 GKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+ +         + +  +P    + ALI+A G++G ++ A  +  +M       + + I
Sbjct: 192 GQPEHALRVYERMLADGAQPTATTYTALISAYGKTGKIEEALRIFQDMVRR--GCERNVI 249

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T  +L+ AC  AG+   A E+   +H+ N K     +   ++ C+Q G W+ A  V++ M
Sbjct: 250 TYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACAQGGQWKAAQDVFEQM 309

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
              G  PD V                                   SY+ L+ A      W
Sbjct: 310 PSCGCKPDAV-----------------------------------SYAILISAFDRGNQW 334

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITAL 341
            +AL+  + M+    +P V   N +I AL
Sbjct: 335 CRALQALDEMQGQGHRPDVGVYNVVIEAL 363



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 127/290 (43%), Gaps = 26/290 (8%)

Query: 23  HDVSEQLHSYNRL----IRQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCK 72
           H V   +H+Y+ L    I+   +   +D+   + R+G       Y      H +  N   
Sbjct: 102 HGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILIDIHGKMGNW-- 159

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            Q+A++           P + T+N ++S C  S   E A +V   +   G +     YT 
Sbjct: 160 -QEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQPTATTYTA 218

Query: 133 LITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           LI+   K+GK+        D +    + + + +++LI+AC ++G    A ++L EM+ + 
Sbjct: 219 LISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMHRD- 277

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
               P+ +T  AL+ ACA  GQ   A++V++ +     K     Y I I+   +   W  
Sbjct: 278 -NCKPNTVTFNALLSACAQGGQWKAAQDVFEQMPSCGCKPDAVSYAILISAFDRGNQWCR 336

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA---AFEILQEAKNQG 291
           A    D+M  +G  PD    + +I+    +G + A   A +I Q A  QG
Sbjct: 337 ALQALDEMQGQGHRPDVGVYNVVIEALTRSGVLSAQLKAAQIFQAATRQG 386



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 27/225 (12%)

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           + +Y++++  C + +  +KALEL   M+   +   V T +AL+      ++L   ++V  
Sbjct: 73  VYTYTTIISQCGSHQQLRKALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYG 132

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 415
            +   G  PN +TY+IL+    +  + +  + +L   ++ G  P +  +  I+  C+R  
Sbjct: 133 QLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNR-- 190

Query: 416 EKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA 475
                         SG+P+        AL VY   +  G  PT    + ++         
Sbjct: 191 --------------SGQPE-------HALRVYERMLADGAQPTATTYTALISAYGKTGKI 229

Query: 476 DIRERLVENL---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEE 517
           +   R+ +++   G   + +  S+L S  +  G +   A  LL+E
Sbjct: 230 EEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQ-LALELLDE 273


>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
 gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g31400, chloroplastic; Flags: Precursor
 gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
 gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
          Length = 918

 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 155/332 (46%), Gaps = 11/332 (3%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------- 142
           T+  F+ L+S    S   E A  V   ++E GL+ +   Y  +I  C K G         
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326

Query: 143 VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M  N V+PDR+ FN+L+  C + G  + A ++  EM      ++ D  +   L+ A 
Sbjct: 327 FDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNR--RIEQDVFSYNTLLDAI 384

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              GQ+D A E+   +    I      Y+  I+  ++ G ++ A +++ +M   G+  D 
Sbjct: 385 CKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDR 444

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L+      G+ E A +IL+E  + GI   +++Y++L+G       + +  +++  
Sbjct: 445 VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTE 504

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK   + P + T + LI     G    + ME+  + KS GL  + + YS L+ A  +   
Sbjct: 505 MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGL 564

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           V   + L+ +  ++G+ PN+V +  II    R
Sbjct: 565 VGSAVSLIDEMTKEGISPNVVTYNSIIDAFGR 596



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 183/461 (39%), Gaps = 78/461 (16%)

Query: 16  GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
           G + N  +  S  + +Y R    G   E I +   M+  GL      Y+A      K   
Sbjct: 262 GGYGNTVYAFSALISAYGR---SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGM 318

Query: 76  AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
             K+  +FF  +      P   TFN L++VC+     E A  +   +    ++ D   Y 
Sbjct: 319 EFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378

Query: 132 TLITTCAKSGKVDAMFE------------------------------------------- 148
           TL+    K G++D  FE                                           
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            +  DRV +N L++   + G  + A D+L EM A V  +  D +T  AL+      G+ D
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREM-ASV-GIKKDVVTYNALLGGYGKQGKYD 496

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
             ++V+  + + ++      Y+  I+  S+ G ++ A  ++ +    G+  D V  SALI
Sbjct: 497 EVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALI 556

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK-------------- 314
           D     G V +A  ++ E   +GIS  +++Y+S++ A   +    +              
Sbjct: 557 DALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSS 616

Query: 315 ----ALELYEHMKSIKLKPTVST-MNALITALCDG--DQLPKTMEVLSDMKSLGLCPNTI 367
               AL   E  + I+L   ++T  N   T  C+    +L   +EV   M  L + PN +
Sbjct: 617 SALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVV 676

Query: 368 TYSILLVACERKDDVEVGLMLLSQ-----AKEDGVIPNLVM 403
           T+S +L AC R +  E   MLL +      K  GV+  L+M
Sbjct: 677 TFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM 717



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 111/226 (49%), Gaps = 3/226 (1%)

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           A++      G+V  A+ +++         T   ++  I+   ++G  E A SV++ M + 
Sbjct: 238 AMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY 297

Query: 256 GVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           G+ P+ V  +A+ID  G  G + +   +   E +  G+    I+++SL+  CS    W+ 
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEA 357

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A  L++ M + +++  V + N L+ A+C G Q+    E+L+ M    + PN ++YS ++ 
Sbjct: 358 ARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVID 417

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
              +    +  L L  + +  G+  + V +  ++ + ++  R E+A
Sbjct: 418 GFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEA 463



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 119/294 (40%), Gaps = 35/294 (11%)

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
           C    G +EFA        ++G +      SA+I   G  GKV  A  I + A   G   
Sbjct: 212 CDKAVGFYEFAVKRERRKNEQGKLA-----SAMISTLGRYGKVTIAKRIFETAFAGGYGN 266

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD-QLPKTMEV 353
            + ++S+L+ A   +   ++A+ ++  MK   L+P + T NA+I A   G  +  +  + 
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             +M+  G+ P+ IT++ LL  C R    E    L  +                  M +R
Sbjct: 327 FDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDE------------------MTNR 368

Query: 414 RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLP 472
           R E      + V S+N+    I +     LA  +  +  V   +P V   S V+      
Sbjct: 369 RIE------QDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKA 422

Query: 473 YNADIRERL---VENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGI 523
              D    L   +  LG++ D +  + L S+    G  +  A  +L E AS GI
Sbjct: 423 GRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSE-EALDILREMASVGI 475


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 185/397 (46%), Gaps = 33/397 (8%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK---SQKAIKEA 80
           V + LH +++L+ QG                   +++V +    N VCK   ++ AIK  
Sbjct: 145 VKKALHFHDKLLAQG-----------------FQLNQVSYGTLINGVCKIGDTRAAIKLL 187

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +    +  P +  ++ ++      +    A+ +   +   G+ AD   Y+TLI      
Sbjct: 188 QKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIE 247

Query: 141 GKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           GK+        + + + + P+   +N L+ A  + G V  A  VLA M      V PD I
Sbjct: 248 GKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKAC--VKPDVI 305

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   LM       +V +A+ V+  +    +      YTI IN   +    + A +++ +M
Sbjct: 306 TYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEM 365

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKN 311
            +K ++P  V  S+LID    +G++   ++++ E  ++G    +I+YSSL+ G C N  +
Sbjct: 366 HQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNG-H 424

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +A+ L+  MK   ++P   T   L+  LC G +L    EV  D+ + G   N  TY++
Sbjct: 425 LDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNV 484

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ++    ++  +E  L +LS+ +++G IP+ V F+ II
Sbjct: 485 MIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIII 521



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 164/388 (42%), Gaps = 41/388 (10%)

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
            + ++PD +  N LI      G +   F VLA++    +P  PD +T+  L+K     GQ
Sbjct: 87  LKGIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYP--PDTVTLNTLIKGLCLKGQ 144

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           V +A   +  +     +     Y   IN   + GD   A  +   +  +   P+ V  S 
Sbjct: 145 VKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYST 204

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 325
           +ID       V  A+ +  E   +GIS  +++YS+L+ G C   K  ++A+ L   M   
Sbjct: 205 IIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGK-LKEAIGLLNEMVLK 263

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + P V T N L+ ALC   ++ +   VL+ M    + P+ ITYS L+       +V+  
Sbjct: 264 TINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKA 323

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 444
             + +     GV P++  +  +I G C                        +NK    AL
Sbjct: 324 QHVFNAMSLMGVTPDVHTYTILINGFC------------------------KNKMVDEAL 359

Query: 445 MVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSL 500
            +++E      +P +   S ++  L    ++PY  D+ + +  + G  A+ +  S   SL
Sbjct: 360 NLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEM-HDRGQPANVITYS---SL 415

Query: 501 IDGF---GEYDPRAFSLLEEAASFGIVP 525
           IDG    G  D RA +L  +    GI P
Sbjct: 416 IDGLCKNGHLD-RAIALFNKMKDQGIRP 442



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 6/238 (2%)

Query: 147  FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
             + ++PD    N LI      G +   F +LA++    +   PD IT   L+      GQ
Sbjct: 954  LKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGY--HPDTITFTTLINGLCLKGQ 1011

Query: 207  VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            V++A   +  +     +     Y   IN   + GD   A  +   +  +   PD V  + 
Sbjct: 1012 VNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNT 1071

Query: 267  LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 325
            +ID       V  A+ +  E   +GIS  +++Y++L+ G C   K  ++A+ L   M   
Sbjct: 1072 IIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGK-LKEAIGLLNKMVLK 1130

Query: 326  KLKPTVSTMNALITALCD--GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
             + P V T N L+ ALC    D L +++ +LS M+  G   N +T+ I++ A   KD+
Sbjct: 1131 TINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDE 1188



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 2/228 (0%)

Query: 183  EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
            E+  + PD  T+  L+    + GQ+     +   I K         +T  IN     G  
Sbjct: 953  ELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQV 1012

Query: 243  EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
              A   +D +  +G   ++V    LI+     G   AA ++L++   +     ++ Y+++
Sbjct: 1013 NKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTI 1072

Query: 303  MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
            + A    +   KA  L+  M    +   V T N LI   C   +L + + +L+ M    +
Sbjct: 1073 IDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTI 1132

Query: 363  CPNTITYSILLVAC--ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             PN  TY+IL+ A   E KD ++  L +LS+ +++G   N V F+ II
Sbjct: 1133 NPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIII 1180



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 91/210 (43%), Gaps = 5/210 (2%)

Query: 222 IKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
           ++ TP +  +   ++  ++   +  A S+   +  KG+ PD + L+ LI+   H G++  
Sbjct: 53  MRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITF 112

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
            F +L +   +G     ++ ++L+         +KAL  ++ + +   +    +   LI 
Sbjct: 113 GFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLIN 172

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
            +C        +++L  +      PN + YS ++ A  +   V     L S+    G+  
Sbjct: 173 GVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISA 232

Query: 400 NLVMFKCII-GMC--SRRYEKARTLNEHVL 426
           ++V +  +I G C   +  E    LNE VL
Sbjct: 233 DVVTYSTLIYGFCIEGKLKEAIGLLNEMVL 262



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 79/188 (42%), Gaps = 3/188 (1%)

Query: 242  WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            +  A S+   +  KG+ PD   L+ LI+   H G++   F IL +   +G     I++++
Sbjct: 942  YSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTT 1001

Query: 302  LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
            L+          KAL  ++ + +   +    +   LI  +C        +++L  +    
Sbjct: 1002 LINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRL 1061

Query: 362  LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKA 418
              P+ + Y+ ++ A  +   V     L  +    G+  ++V +  +I G C   +  E  
Sbjct: 1062 TKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAI 1121

Query: 419  RTLNEHVL 426
              LN+ VL
Sbjct: 1122 GLLNKMVL 1129



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 113/264 (42%), Gaps = 29/264 (10%)

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           II ++ ++ + +  K++  A+ L   ++   ++P + T+N LI   C   Q+     VL+
Sbjct: 59  IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLA 118

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
            +   G  P+T+T + L+     K  V+  L    +    G   N V +  +I G+C   
Sbjct: 119 KILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIG 178

Query: 415 YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 474
             +A      +L       +I+ + T   +++Y   I A  +   ++VS+  G       
Sbjct: 179 DTRAAI---KLLQ------KIDGRLTKPNVVMYSTIIDA--LCKYQLVSEAYGLFS---- 223

Query: 475 ADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVPCVSFKE 531
               E  V+  G+SAD +  S   +LI GF   G+    A  LL E     I P V    
Sbjct: 224 ----EMTVK--GISADVVTYS---TLIYGFCIEGKL-KEAIGLLNEMVLKTINPNVYTYN 273

Query: 532 IPVVVDARKLEIHTAKVYLLTILK 555
           I V    ++ ++  AK  L  +LK
Sbjct: 274 ILVDALCKEGKVKEAKSVLAVMLK 297



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 108/275 (39%), Gaps = 31/275 (11%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
            P L T N+L++           F +L  + + G   D   +TTLI      G+V+     
Sbjct: 959  PDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALH- 1017

Query: 150  VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
                   F+  + A G        F +             + ++ G L+      G    
Sbjct: 1018 -------FHDKLLAQG--------FQL-------------NQVSYGTLINGVCKIGDTRA 1049

Query: 210  AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
            A ++ + I     K    +Y   I+   +      A  ++ +M  KG+  D V  + LI 
Sbjct: 1050 AIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIY 1109

Query: 270  FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKN-WQKALELYEHMKSIKL 327
                 GK++ A  +L +   + I+  + +Y+ L+ A C   K+   ++L +   M+    
Sbjct: 1110 GFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGC 1169

Query: 328  KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
            K    T   +I+AL + D+  K  ++L +M + GL
Sbjct: 1170 KANAVTFEIIISALFEKDENDKVEKLLHEMIARGL 1204



 Score = 39.7 bits (91), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 1/103 (0%)

Query: 310  KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
            K++  A+ L   ++   ++P + T+N LI   C   Q+     +L+ +   G  P+TIT+
Sbjct: 940  KHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITF 999

Query: 370  SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            + L+     K  V   L    +    G   N V +  +I G+C
Sbjct: 1000 TTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVC 1042


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 191/408 (46%), Gaps = 27/408 (6%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  + +YN LIR     G I   + L + ME KG L     Y+      CK +K I + 
Sbjct: 201 VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK-IDDG 259

Query: 81  FRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           F+  + +      P L ++N++++ +C   +  E +F VL  +   G   D   Y TLI 
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSF-VLTEMNRRGYSLDEVTYNTLIK 318

Query: 136 TCAKSGK--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K G          + +   + P  + + +LI +  ++G ++RA + L +M   V  +
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQM--RVRGL 376

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEF 244
            P+  T   L+   +  G ++   E Y+++ + N  G +P V  Y   IN    TG  E 
Sbjct: 377 CPNERTYTTLVDGFSQKGYMN---EAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED 433

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A +V +DM +KG+ PD V  S ++     +  V+ A  + +E   +GI    I+YSSL+ 
Sbjct: 434 AIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                +  ++A +LYE M  + L P   T  ALI A C    L K +++ ++M   G+ P
Sbjct: 494 GFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLP 553

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           + +TYS+L+    ++        LL +   +  +P+ V +  +I  CS
Sbjct: 554 DVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCS 601



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/412 (22%), Positives = 172/412 (41%), Gaps = 71/412 (17%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-VDRAREVY 214
           VF+ ++ +  +   +D+A  ++    A+ H   P  ++  A++ A   + + +  A  V+
Sbjct: 136 VFDLVVKSYSRLSLIDKALSIVHL--AQAHGFMPGVLSYNAVLDATIRSKRNISFAENVF 193

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           K + +  +      Y I I      G+ + A +++D M  KG +P+ V  + LID     
Sbjct: 194 KEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKL 253

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK----------------------- 310
            K++  F++L+    +G+   +ISY+ ++ G C   +                       
Sbjct: 254 RKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313

Query: 311 -----------NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
                      N+ +AL ++  M    L P+V T  +LI ++C    + + ME L  M+ 
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
            GLCPN  TY+ L+    +K  +     +L +  ++G  P++V +  +I           
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALI----------- 422

Query: 420 TLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD--- 476
             N H ++      ++E+     A+ V  +    G  P V   S VL      Y+ D   
Sbjct: 423 --NGHCVT-----GKMED-----AIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEAL 470

Query: 477 -IRERLVENLGVSADALKRSNLCSLIDGFGEY--DPRAFSLLEEAASFGIVP 525
            ++  +VE  G+  D +  S   SLI GF E      A  L EE    G+ P
Sbjct: 471 RVKREMVEK-GIKPDTITYS---SLIQGFCEQRRTKEACDLYEEMLRVGLPP 518



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 166/384 (43%), Gaps = 36/384 (9%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIK--EAF 81
           +YN LI+    +G   + + +  +M R GL      Y +   ++CK+    +A++  +  
Sbjct: 312 TYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQM 371

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R   L PN    T+  L+   +       A++VLR + + G       Y  LI     +G
Sbjct: 372 RVRGLCPNE--RTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTG 429

Query: 142 KVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K++   A+ E++K     PD V ++ +++   +S  VD A  V  EM  +   + PD IT
Sbjct: 430 KMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEK--GIKPDTIT 487

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +L++      +   A ++Y+ + +  +      YT  IN     GD E A  ++++M 
Sbjct: 488 YSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMV 547

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK--- 310
           +KGV+PD V  S LI+      +   A  +L +   +      ++Y +L+  CSN +   
Sbjct: 548 EKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKS 607

Query: 311 ------------NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
                          +A +++E M     KP  +  N +I   C    + K   +  +M 
Sbjct: 608 VVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMV 667

Query: 359 SLGLCPNTITYSILLVACERKDDV 382
             G   +T+T   L+ A  ++  V
Sbjct: 668 KSGFLLHTVTVIALVKALHKEGKV 691



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 139/332 (41%), Gaps = 25/332 (7%)

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM--TKKGVIPDEVFLSALIDFAGH 273
           ++ K+ +  T ++  +A +  ++T D E+A  V+  +  T             ++     
Sbjct: 89  ILTKFKLYKTAQI--LAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSR 146

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVS 332
              ++ A  I+  A+  G   G++SY++++ A   +K N   A  +++ M   ++ P V 
Sbjct: 147 LSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVF 206

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N LI   C    +   + +   M++ G  PN +TY+ L+    +   ++ G  LL   
Sbjct: 207 TYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM 266

Query: 393 KEDGVIPNLVMFKCII-GMC--SRRYEKARTLNEHVLSFNSGRPQIENKWTSL------- 442
              G+ PNL+ +  +I G+C   R  E +  L E       G    E  + +L       
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTE---MNRRGYSLDEVTYNTLIKGYCKE 323

Query: 443 -----ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 497
                AL+++ E +  G  P+V   + ++  +    N +     ++ + V          
Sbjct: 324 GNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTY 383

Query: 498 CSLIDGFGE--YDPRAFSLLEEAASFGIVPCV 527
            +L+DGF +  Y   A+ +L E    G  P V
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSV 415



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 110/266 (41%), Gaps = 40/266 (15%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRF 83
           +Y+ LI+    Q R  E  DL E+M R GL   +  Y A     C     +KA++     
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEM 546

Query: 84  FKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK--- 139
            +    P + T+++L++ +   S+  E    +L+L  E  + +D   Y TLI  C+    
Sbjct: 547 VEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVT-YHTLIENCSNIEF 605

Query: 140 ---------------SGKVDAMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
                            + D +FE     N KPD   +N +I    ++G + +A+ +  E
Sbjct: 606 KSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKE 665

Query: 180 MNAE---VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
           M      +H V     T+ AL+KA    G+V+    V   + +       E   + +   
Sbjct: 666 MVKSGFLLHTV-----TVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEIN 720

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEV 262
            + G+ +    V  +M K G +P+ +
Sbjct: 721 HREGNMDVVLDVLAEMAKDGFLPNGI 746


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 164/345 (47%), Gaps = 16/345 (4%)

Query: 70   VCKSQKAIKEAFRFF-----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
            +CK ++ +  A++ F     KL  +PTL+++N L+        +E A+ + + ++  G  
Sbjct: 762  LCKHKRELY-AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCA 820

Query: 125  ADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDV 176
             D   +  L+    KSGK+  +FE          KPD + +N +I++  +S  +D+A D 
Sbjct: 821  PDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDF 880

Query: 177  LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
              ++ +      P   T G L+   A  G+++ A  +++ +  Y  K    ++ I IN  
Sbjct: 881  FYDLVSS--DFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGY 938

Query: 237  SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
             + GD E AC ++  M  +G+ PD    + L+D    AG+V+ A     E K+ G+    
Sbjct: 939  GKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDF 998

Query: 297  ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
            I+Y+ ++     ++  ++AL LY  M++  + P + T N+L+  L     + +   +  +
Sbjct: 999  IAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEE 1058

Query: 357  MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
            ++  GL P+  TY+ L+      ++ E    +      DG  PN+
Sbjct: 1059 LQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNI 1103



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 152/313 (48%), Gaps = 10/313 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + TF +L+ V   ++D + AF    ++++ G+  +   Y TLI    ++G+++   + 
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL 424

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V+P    +N  I   G+SG   +A +   +M A+   + P+ +   A + + 
Sbjct: 425 LGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAK--GIVPNIVACNASLYSL 482

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A  G++  A+ ++  + +  +      Y + + C S+ G  + A ++  +M + G  PD 
Sbjct: 483 AEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDV 542

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           + +++LID    AG+V+ A+++    K+  +S  +++Y++L+         QKA+EL+E 
Sbjct: 543 IVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFES 602

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M   K  P   + N L+   C  D++   +++ S M  +   P+ +TY+ ++    +++ 
Sbjct: 603 MIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENK 662

Query: 382 VEVGLMLLSQAKE 394
           V        Q K+
Sbjct: 663 VNHAFWFFHQLKK 675



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 161/327 (49%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P+L T++ LM      +DSE    +L+ +++ GL+ +   +T  I    ++GK+D  +E 
Sbjct: 225 PSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEI 284

Query: 150 VK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            +        PD V +  LI A   +G ++ A ++  +M A  H   PD +    L+   
Sbjct: 285 FRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHK--PDQVIYITLLDKF 342

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            + G +D  +E +  +           +TI ++   +  D++ A + +D M K+G++P+ 
Sbjct: 343 NDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNL 402

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LI     AG++E A ++L   ++ G+     +Y+  +     +    KA+E +E 
Sbjct: 403 HTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEK 462

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK+  + P +   NA + +L +  +L +   + + ++  GL P+++TY++++    +   
Sbjct: 463 MKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQ 522

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           V+  + LLS+   +G  P++++   +I
Sbjct: 523 VDEAVNLLSEMIRNGCEPDVIVVNSLI 549



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 148/340 (43%), Gaps = 14/340 (4%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           ++N L+ +   S     A +V R +   GLK   K Y+ L+    K    + +       
Sbjct: 194 SYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               ++P+   F   I   G++G +D A+++   M+ E     PD +T   L+ A  NAG
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDE--GCGPDLVTYTVLIDALCNAG 311

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           Q++ A+E++  +     K    +Y   ++  +  GD +     +  M   G +PD V  +
Sbjct: 312 QLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFT 371

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+D    A   + AF      + QGI   + +Y++L+     A   + AL+L   M+S+
Sbjct: 372 ILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESV 431

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            ++PT  T N  I       +  K +E    MK+ G+ PN +  +  L +      +   
Sbjct: 432 GVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREA 491

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
             + +  +E+G+ P+ V +     M  + Y K   ++E V
Sbjct: 492 KTMFNGLRENGLAPDSVTY----NMMMKCYSKVGQVDEAV 527



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 122/573 (21%), Positives = 226/573 (39%), Gaps = 84/573 (14%)

Query: 33   NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPN 89
            + L + GR+ E   + + M+   L      Y+     + K    QKAI+      +   +
Sbjct: 550  DSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCS 609

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
            P   +FN L+     + + E A ++   +     K D   Y T+I    K  KV+  F  
Sbjct: 610  PNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWF 669

Query: 148  -----ENVKPDRVVFNAL---ITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                 +++ PD V    L   +  CGQ G A+  A D + ++   V+    + +  G L+
Sbjct: 670  FHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLV 729

Query: 199  KACANAGQVDRA------------------------------REVY------KMIHKYNI 222
            +A     ++D+A                              RE+Y      K   K  I
Sbjct: 730  EA-----EMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGI 784

Query: 223  KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
              T   Y   I    +    E A  ++ DM   G  PD    + L+   G +GK+   FE
Sbjct: 785  SPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFE 844

Query: 283  ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
            + +E  ++      I+Y+ ++ + + + N  KAL+ +  + S   +PT  T   LI  L 
Sbjct: 845  LYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLA 904

Query: 343  DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
               +L + M +  +M   G  PN   ++IL+    +  D E    L  +   +G+ P+L 
Sbjct: 905  KVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLK 964

Query: 403  MFKCIIG---MCSRRYE--------KARTLNEHVLSFNS-----GRPQIENKWTSLALMV 446
             +  ++    +  R  E        K+  L+   +++N      G+ Q   +    AL +
Sbjct: 965  SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEE----ALAL 1020

Query: 447  YREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDG 503
            Y E    G +P +   + ++  L L    +  +R+ E L   G+  D    +   +LI G
Sbjct: 1021 YNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYN---ALIRG 1077

Query: 504  F--GEYDPRAFSLLEEAASFGIVPCV-SFKEIP 533
            +   E    A+++ +     G  P + ++ ++P
Sbjct: 1078 YSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLP 1110



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 137/341 (40%), Gaps = 31/341 (9%)

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D  T   + KA +  G + +   V   + K         Y   I+   Q+G    A  VY
Sbjct: 156 DLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVY 215

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
             M  +G+ P     SAL+   G     E    +L+E ++ G+   + +++  +     A
Sbjct: 216 RRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRA 275

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
               +A E++  M      P + T   LI ALC+  QL    E+   MK+ G  P+ + Y
Sbjct: 276 GKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIY 335

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFN 429
             LL       D++      SQ + DG +P++V F  ++ +      KAR  +E   +F+
Sbjct: 336 ITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLC----KARDFDEAFATFD 391

Query: 430 SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADIRERL--VENLG 486
             R Q                   G +P +   + ++ G L+     D  + L  +E++G
Sbjct: 392 VMRKQ-------------------GILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVG 432

Query: 487 VSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVP 525
           V   A   +     ID FG+     +A    E+  + GIVP
Sbjct: 433 VQPTAYTYN---IFIDYFGKSGETGKAVETFEKMKAKGIVP 470



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 6/150 (4%)

Query: 267 LIDFAGHAGKVE---AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
           +++F     KVE   A FE +Q+   + I   + +Y ++  A S     ++   +   M+
Sbjct: 128 MLEFLRVHDKVEDMAAVFEFMQK---KIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMR 184

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
                    + N LI  L       + +EV   M S GL P+  TYS L+VA  +K D E
Sbjct: 185 KAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSE 244

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           + ++LL + ++ G+ PN+  F   I +  R
Sbjct: 245 MVMVLLKEMEDLGLRPNVYTFTICIRVLGR 274


>gi|449018641|dbj|BAM82043.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
           10D]
          Length = 805

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 175/376 (46%), Gaps = 26/376 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L + GR ++ + L   +ER+G +++D   ++   +      A  +A   F K++ N   P
Sbjct: 371 LYKSGRAADALSLCRIVEREGHIEIDVASYSILISCLGKCGASAQAIEMFHKMIRNGVAP 430

Query: 91  TLSTFNMLMSVCASSKDSEGAF--QVLRLVQEAGLKADCKL----YTTLITTCAKSGKVD 144
              TF+ L         ++GAF  Q +RL Q        +L    Y  ++    ++G++D
Sbjct: 431 NAFTFSALFGAL-----TDGAFFDQAMRLFQMIRASYPNELNVVVYNAVLKYVGRAGRID 485

Query: 145 AMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           A  +         NV+PD V +  ++  C +   V  A+ VL  M      + P++    
Sbjct: 486 AALDLLGQMEQNRNVQPDIVTYGTILDICAKKQDVSLAYAVLDRMRK--RGMRPNNFCYA 543

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+ ACA AG  D+A  +++ +    ++    +    +   ++    E A   +++M   
Sbjct: 544 SLIDACARAGLPDQAESLFRQLRAEGLEYDLFICNALLGAFARAKMVERAFQAFEEMRSA 603

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           GV  D +  + LI  A  A + + A++  +  K   IS    +Y++L+ ACS +   + A
Sbjct: 604 GVRGDRITFNTLITAAARAREFDKAWKAFETMKKSNISADATTYNALIDACSKSGMTELA 663

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             L+  M+   L+PT+ T NALI A      + +  +VL  M   G+ P+T T +ILL A
Sbjct: 664 FALFNEMRQAHLQPTIFTFNALIGACTKLQDMRRATQVLMLMHGFGVYPDTFTLNILLTA 723

Query: 376 CERKDDVEVGLMLLSQ 391
           C R +D +  + L+ +
Sbjct: 724 CARNEDFDYAISLVRE 739



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 155/329 (47%), Gaps = 11/329 (3%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLIT---TCAKSGKVDAMFEN- 149
            N ++S    S  +  A  + R+V+  G ++ D   Y+ LI+    C  S +   MF   
Sbjct: 364 LNKILSALYKSGRAADALSLCRIVEREGHIEIDVASYSILISCLGKCGASAQAIEMFHKM 423

Query: 150 ----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               V P+   F+AL  A       D+A  +   + A  +P + + +   A++K    AG
Sbjct: 424 IRNGVAPNAFTFSALFGALTDGAFFDQAMRLFQMIRAS-YPNELNVVVYNAVLKYVGRAG 482

Query: 206 QVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           ++D A ++  +M    N++     Y   ++ C++  D   A +V D M K+G+ P+    
Sbjct: 483 RIDAALDLLGQMEQNRNVQPDIVTYGTILDICAKKQDVSLAYAVLDRMRKRGMRPNNFCY 542

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++LID    AG  + A  + ++ + +G+   +   ++L+GA + AK  ++A + +E M+S
Sbjct: 543 ASLIDACARAGLPDQAESLFRQLRAEGLEYDLFICNALLGAFARAKMVERAFQAFEEMRS 602

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             ++    T N LITA     +  K  +    MK   +  +  TY+ L+ AC +    E+
Sbjct: 603 AGVRGDRITFNTLITAAARAREFDKAWKAFETMKKSNISADATTYNALIDACSKSGMTEL 662

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
              L ++ ++  + P +  F  +IG C++
Sbjct: 663 AFALFNEMRQAHLQPTIFTFNALIGACTK 691



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 74/358 (20%), Positives = 161/358 (44%), Gaps = 22/358 (6%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP-TLS 93
           G  ++ I++   M R G+      + A  F          +A R F+++    PN   + 
Sbjct: 411 GASAQAIEMFHKMIRNGVAPNAFTFSA-LFGALTDGAFFDQAMRLFQMIRASYPNELNVV 469

Query: 94  TFNMLMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITTCAKSGKVDAMF----- 147
            +N ++     +   + A  +L ++ Q   ++ D   Y T++  CAK   V   +     
Sbjct: 470 VYNAVLKYVGRAGRIDAALDLLGQMEQNRNVQPDIVTYGTILDICAKKQDVSLAYAVLDR 529

Query: 148 ---ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                ++P+   + +LI AC ++G  D+A  +  ++ AE   ++ D     AL+ A A A
Sbjct: 530 MRKRGMRPNNFCYASLIDACARAGLPDQAESLFRQLRAE--GLEYDLFICNALLGAFARA 587

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
             V+RA + ++ +    ++G    +   I   ++  +++ A   ++ M K  +  D    
Sbjct: 588 KMVERAFQAFEEMRSAGVRGDRITFNTLITAAARAREFDKAWKAFETMKKSNISADATTY 647

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           +ALID    +G  E AF +  E +   +   I ++++L+GAC+  ++ ++A ++   M  
Sbjct: 648 NALIDACSKSGMTELAFALFNEMRQAHLQPTIFTFNALIGACTKLQDMRRATQVLMLMHG 707

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-----LGLCPNTITYSILLVACE 377
             + P   T+N L+TA    +     + ++ + ++     L    ++I  ++ + AC+
Sbjct: 708 FGVYPDTFTLNILLTACARNEDFDYAISLVREFETNYRVRLDRLGSSIVTNLCIKACD 765


>gi|145517919|ref|XP_001444837.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412270|emb|CAK77440.1| unnamed protein product [Paramecium tetraurelia]
          Length = 981

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 159/338 (47%), Gaps = 17/338 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           PT+ T N ++     +   E A++    ++    K D   YTTLI     S  +D     
Sbjct: 319 PTIVTINTMIDQYFKNNQREKAWKTFENLKLTQTKPDNFTYTTLINGLKNSDNMDLKLAF 378

Query: 145 AMFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           ++FE  K    PD++++N L+ AC  +G ++R F +L EM  +   +  D IT   L+K 
Sbjct: 379 SLFEEYKQYNQPDQIIYNCLLDACINAGDLNRGFQLLNEM-KQSQTIQLDEITYNTLIKG 437

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIP 259
           C    +++ A  +++ +    IK     +   ++ C +      A   +++M K+ G+ P
Sbjct: 438 CGRKKRLNDALNLFEEMKLIGIKPNRISFNSLLDSCVKCNKMNIAWRYFEEMRKQYGIFP 497

Query: 260 DEVFLSALID--FAGHAGKVE--AAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQK 314
           D    S L++     H+ + E   A  +L++ +  G      I Y+SL+ AC      QK
Sbjct: 498 DNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQK 557

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
            +EL+  MK+ +++P+  T   LI A    + L    ++  +MK   +  N +TY  L+ 
Sbjct: 558 GMELFREMKNKQIEPSSVTYGILIKAYGKQNDLNGAFKIFEEMKQKKIPINDVTYGCLVD 617

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           AC R D ++  L  + Q K   +  N V++  II G C
Sbjct: 618 ACVRNDRLDQALQFIDQMKSQNLPINTVLYTTIIKGFC 655



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 159/361 (44%), Gaps = 19/361 (5%)

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITTCAK 139
           F  +K    P    +N L+  C ++ D    FQ+L  + Q   ++ D   Y TLI  C +
Sbjct: 381 FEEYKQYNQPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQTIQLDEITYNTLIKGCGR 440

Query: 140 SGKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
             +++    +FE      +KP+R+ FN+L+ +C +   ++ A+    EM  + + + PD+
Sbjct: 441 KKRLNDALNLFEEMKLIGIKPNRISFNSLLDSCVKCNKMNIAWRYFEEMRKQ-YGIFPDN 499

Query: 192 ITIGALMKAC----ANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFAC 246
            T   L+       +N  ++ RA  + + I +    K    +Y   I+ C +  + +   
Sbjct: 500 FTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGM 559

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            ++ +M  K + P  V    LI   G    +  AF+I +E K + I +  ++Y  L+ AC
Sbjct: 560 ELFREMKNKQIEPSSVTYGILIKAYGKQNDLNGAFKIFEEMKQKKIPINDVTYGCLVDAC 619

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK-SLGLCPN 365
                  +AL+  + MKS  L         +I   C  +Q  + ++    MK S    PN
Sbjct: 620 VRNDRLDQALQFIDQMKSQNLPINTVLYTTIIKGFCKLNQTEEAIKYFDLMKQSPKTYPN 679

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEH 424
            ITY+ LL    +   +     L  +  +  + P+L+ F  ++ G C  R    + LNE 
Sbjct: 680 LITYNSLLDGMVKNGLLNQADKLFQELVDSKIKPDLITFSTLLKGHC--RKGNMKRLNET 737

Query: 425 V 425
           V
Sbjct: 738 V 738



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 153/343 (44%), Gaps = 21/343 (6%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDA-- 145
           +PT   FN L+         E A  +L  ++ +A ++       T+I    K+ + +   
Sbjct: 282 HPTDIFFNKLIDYAFRKSQVEMAEYLLVFMRDQAKIQPTIVTINTMIDQYFKNNQREKAW 341

Query: 146 -MFENVK-----PDRVVFNALITACGQSGAVDR--AFDVLAEMNAEVHPVDPDHITIGAL 197
             FEN+K     PD   +  LI     S  +D   AF +  E      P   D I    L
Sbjct: 342 KTFENLKLTQTKPDNFTYTTLINGLKNSDNMDLKLAFSLFEEYKQYNQP---DQIIYNCL 398

Query: 198 MKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           + AC NAG ++R  ++  +M     I+     Y   I  C +      A +++++M   G
Sbjct: 399 LDACINAGDLNRGFQLLNEMKQSQTIQLDEITYNTLIKGCGRKKRLNDALNLFEEMKLIG 458

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGAC----SNAKN 311
           + P+ +  ++L+D      K+  A+   +E + Q GI     +YS L+       SN   
Sbjct: 459 IKPNRISFNSLLDSCVKCNKMNIAWRYFEEMRKQYGIFPDNFTYSILVNGIKTNHSNRDE 518

Query: 312 WQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             +A+ L E ++   + KP     N+LI A    +++ K ME+  +MK+  + P+++TY 
Sbjct: 519 LLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMELFREMKNKQIEPSSVTYG 578

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           IL+ A  +++D+     +  + K+  +  N V + C++  C R
Sbjct: 579 ILIKAYGKQNDLNGAFKIFEEMKQKKIPINDVTYGCLVDACVR 621



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/377 (19%), Positives = 162/377 (42%), Gaps = 25/377 (6%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVP-NPT 91
           I  G ++    LL +M++   + +D++ +      C  +K + +A   F   KL+   P 
Sbjct: 403 INAGDLNRGFQLLNEMKQSQTIQLDEITYNTLIKGCGRKKRLNDALNLFEEMKLIGIKPN 462

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSG-------KV 143
             +FN L+  C        A++    + ++ G+  D   Y+ L+     +        + 
Sbjct: 463 RISFNSLLDSCVKCNKMNIAWRYFEEMRKQYGIFPDNFTYSILVNGIKTNHSNRDELLRA 522

Query: 144 DAMFENV------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
             + E +      KPD +++N+LI AC +   + +  ++  EM  +   ++P  +T G L
Sbjct: 523 ITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMELFREMKNK--QIEPSSVTYGIL 580

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +KA      ++ A ++++ + +  I      Y   ++ C +    + A    D M  + +
Sbjct: 581 IKAYGKQNDLNGAFKIFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQFIDQMKSQNL 640

Query: 258 IPDEVFLSALIDFAGHAGKVEAA---FEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
             + V  + +I       + E A   F++++++        +I+Y+SL+          +
Sbjct: 641 PINTVLYTTIIKGFCKLNQTEEAIKYFDLMKQSP--KTYPNLITYNSLLDGMVKNGLLNQ 698

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A +L++ +   K+KP + T + L+   C    + +  E +  M  L + P+     ++L 
Sbjct: 699 ADKLFQELVDSKIKPDLITFSTLLKGHCRKGNMKRLNETVQIMTGLQISPDESLLQLILE 758

Query: 375 ACERKDDVEVGLMLLSQ 391
           AC  +    +G+ +  Q
Sbjct: 759 ACLNQQQYHIGVQIFDQ 775


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 164/345 (47%), Gaps = 16/345 (4%)

Query: 70   VCKSQKAIKEAFRFF-----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
            +CK ++ +  A++ F     KL  +PTL+++N L+        +E A+ + + ++  G  
Sbjct: 762  LCKHKRELY-AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCA 820

Query: 125  ADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDV 176
             D   +  L+    KSGK+  +FE          KPD + +N +I++  +S  +D+A D 
Sbjct: 821  PDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDF 880

Query: 177  LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
              ++ +      P   T G L+   A  G+++ A  +++ +  Y  K    ++ I IN  
Sbjct: 881  FYDLVSS--DFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGY 938

Query: 237  SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
             + GD E AC ++  M  +G+ PD    + L+D    AG+V+ A     E K+ G+    
Sbjct: 939  GKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDF 998

Query: 297  ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
            I+Y+ ++     ++  ++AL LY  M++  + P + T N+L+  L     + +   +  +
Sbjct: 999  IAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEE 1058

Query: 357  MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
            ++  GL P+  TY+ L+      ++ E    +      DG  PN+
Sbjct: 1059 LQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNI 1103



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 161/327 (49%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P+L T++ LM      +DSE    +L+ +++ GL+ +   +T  I    ++GK+D  +E 
Sbjct: 225 PSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEI 284

Query: 150 VK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            +        PD V +  LI A   +G ++ A ++  +M A  H   PD +    L+   
Sbjct: 285 FRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHK--PDQVIYITLLDKF 342

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            + G +D  +E +  +           +TI ++   +  D++ A + +D M K+G++P+ 
Sbjct: 343 NDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNL 402

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LI     AG++E A ++L   ++ G+     +Y + +     +    KA+E +E 
Sbjct: 403 HTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEK 462

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK+  + P +   NA + +L +  +L +   + + ++  GL P+++TY++++    +   
Sbjct: 463 MKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQ 522

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           V+  + LLS+   +G  P++++   +I
Sbjct: 523 VDEAVNLLSEMIRNGCEPDVIVVNSLI 549



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 151/313 (48%), Gaps = 10/313 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + TF +L+ V   ++D + AF    ++++ G+  +   Y TLI    ++G+++   + 
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL 424

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V+P    +   I   G+SG   +A +   +M A+   + P+ +   A + + 
Sbjct: 425 LDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAK--GIVPNIVACNASLYSL 482

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A  G++  A+ ++  + +  +      Y + + C S+ G  + A ++  +M + G  PD 
Sbjct: 483 AEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDV 542

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           + +++LID    AG+V+ A+++    K+  +S  +++Y++L+         QKA+EL+E 
Sbjct: 543 IVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFES 602

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M   K  P   + N L+   C  D++   +++ S M  +   P+ +TY+ ++    +++ 
Sbjct: 603 MIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENK 662

Query: 382 VEVGLMLLSQAKE 394
           V        Q K+
Sbjct: 663 VNHAFWFFHQLKK 675



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 148/340 (43%), Gaps = 14/340 (4%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           ++N L+ +   S     A +V R +   GLK   K Y+ L+    K    + +       
Sbjct: 194 SYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               ++P+   F   I   G++G +D A+++   M+ E     PD +T   L+ A  NAG
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDE--GCGPDLVTYTVLIDALCNAG 311

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           Q++ A+E++  +     K    +Y   ++  +  GD +     +  M   G +PD V  +
Sbjct: 312 QLENAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFT 371

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+D    A   + AF      + QGI   + +Y++L+     A   + AL+L + M+S+
Sbjct: 372 ILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESV 431

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            ++PT  T    I       +  K +E    MK+ G+ PN +  +  L +      +   
Sbjct: 432 GVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREA 491

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
             + +  +E+G+ P+ V +     M  + Y K   ++E V
Sbjct: 492 KTMFNGLRENGLAPDSVTY----NMMMKCYSKVGQVDEAV 527



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 122/573 (21%), Positives = 225/573 (39%), Gaps = 84/573 (14%)

Query: 33   NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPN 89
            + L + GR+ E   + + M+   L      Y+     + K    QKAI+          +
Sbjct: 550  DSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCS 609

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
            P   +FN L+     + + E A ++   +     K D   Y T+I    K  KV+  F  
Sbjct: 610  PNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWF 669

Query: 148  -----ENVKPDRVVFNAL---ITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                 +++ PD V    L   +  CGQ G A+  A D + ++   V+    + +  G L+
Sbjct: 670  FHQLKKSMHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVRFRVNRSFWEDLMGGTLV 729

Query: 199  KACANAGQVDRA------------------------------REVY------KMIHKYNI 222
            +A     ++D+A                              RE+Y      K   K  I
Sbjct: 730  EA-----EMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAYQIFDKFTKKLGI 784

Query: 223  KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
              T   Y   I    +    E A  ++ DM   G  PD    + L+   G +GK+   FE
Sbjct: 785  SPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFE 844

Query: 283  ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
            + +E  ++      I+Y+ ++ + + + N  KAL+ +  + S   +PT  T   LI  L 
Sbjct: 845  LYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLA 904

Query: 343  DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
               +L + M +  +M   G  PN   ++IL+    +  D E    L  +   +G+ P+L 
Sbjct: 905  KVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLK 964

Query: 403  MFKCIIG---MCSRRYE--------KARTLNEHVLSFNS-----GRPQIENKWTSLALMV 446
             +  ++    +  R  E        K+  L+   +++N      G+ Q   +    AL +
Sbjct: 965  SYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEE----ALAL 1020

Query: 447  YREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDG 503
            Y E    G +P +   + ++  L L    +  +R+ E L   G+  D    +   +LI G
Sbjct: 1021 YNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYN---ALIRG 1077

Query: 504  F--GEYDPRAFSLLEEAASFGIVPCV-SFKEIP 533
            +   E    A+++ +     G  P + ++ ++P
Sbjct: 1078 YSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLP 1110



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 142/360 (39%), Gaps = 66/360 (18%)

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +V+    V++ + K  I+   + Y       S  G      +V + M K G + +    +
Sbjct: 137 KVEDMAAVFEFMQKKIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYN 196

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LI     +G    A E+ +   ++G+   + +YS+LM A    ++ +  + L + M+ +
Sbjct: 197 GLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDL 256

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CE------- 377
            L+P V T    I  L    ++ +  E+   M   G  P+ +TY++L+ A C        
Sbjct: 257 GLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENA 316

Query: 378 -----------RKDDVEVGLMLL----------------SQAKEDGVIPNLVMFKCIIGM 410
                       K D  + + LL                SQ + DG +P++V F  ++ +
Sbjct: 317 KELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDV 376

Query: 411 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCL 469
                 KAR  +E   +F+  R Q                   G +P +   + ++ G L
Sbjct: 377 LC----KARDFDEAFATFDVMRKQ-------------------GILPNLHTYNTLICGLL 413

Query: 470 QLPYNADIRERL--VENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVP 525
           +     D  + L  +E++GV   A       + ID FG+     +A    E+  + GIVP
Sbjct: 414 RAGRIEDALKLLDTMESVGVQPTAY---TYITFIDYFGKSGETGKAVETFEKMKAKGIVP 470



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 6/150 (4%)

Query: 267 LIDFAGHAGKVE---AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
           +++F     KVE   A FE +Q+   + I   + +Y ++  A S     ++   +   M+
Sbjct: 128 MLEFLRVHDKVEDMAAVFEFMQK---KIIRRDLDTYLTIFKALSIRGGLRQMTTVLNKMR 184

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
                    + N LI  L       + +EV   M S GL P+  TYS L+VA  +K D E
Sbjct: 185 KAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSE 244

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           + ++LL + ++ G+ PN+  F   I +  R
Sbjct: 245 MVMVLLKEMEDLGLRPNVYTFTICIRVLGR 274


>gi|298706415|emb|CBJ29411.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 416

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 157/330 (47%), Gaps = 13/330 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGK------ 142
           P++ ++++ ++ CA     + A  +LR ++E   +K D   Y+  IT CA  G+      
Sbjct: 8   PSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGGRWQEAVA 67

Query: 143 --VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              D     V+P+ +  NA I A G++G    A  +L  M+     + PD I+    + A
Sbjct: 68  ILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSK--AGLSPDAISYNTAISA 125

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVI 258
              AGQ ++A+E+   + +  I+ T   Y  AI   ++ G   W  A ++   M+  GV 
Sbjct: 126 LGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSLAGVT 185

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD +  ++LI   G  G+ + A  +L+  K QG+S  II YS+ + AC  A  W+ ++ L
Sbjct: 186 PDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWEYSVGL 245

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
               KS+ + P +    A +TA  D +Q  K   +L +M S G+ P+   ++ L+ A   
Sbjct: 246 LAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAALGH 305

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                  + +L    + G   N +++  +I
Sbjct: 306 DGQWTQAVEILESMPKMGAPRNAMVYNALI 335



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 137/285 (48%), Gaps = 9/285 (3%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            ++P    ++  +TAC + G    A  +L EM  E   +  D +   A + ACAN G+  
Sbjct: 5   GIRPSVESYSIGLTACAKGGRWQEALVLLREME-EDDEIKLDVVAYSAAITACANGGRWQ 63

Query: 209 RAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            A  +   +    ++  P V +   AI    + G W+ A S+   M+K G+ PD +  + 
Sbjct: 64  EAVAILSDMPNVGVR--PNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYNT 121

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS--NAKNWQKALELYEHMKS 324
            I   G AG+ E A E++ E    GI   +++Y+S + A +      W++A+ L +HM  
Sbjct: 122 AISALGVAGQSEQAQELMSEMSRLGIEPTVVTYNSAIAAIARGGGGQWRQAVALVKHMSL 181

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             + P   T N+LI A   G Q  + + VL  MK  GL  + I YS  + AC      E 
Sbjct: 182 AGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQWEY 241

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLS 427
            + LL++AK  G+ P+LV +   +  C  + + +KA  L + +LS
Sbjct: 242 SVGLLAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKEMLS 286



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 167/364 (45%), Gaps = 41/364 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           + GR  E + LL +ME    + +D V ++     C +    +EA      +PN    P +
Sbjct: 22  KGGRWQEALVLLREMEEDDEIKLDVVAYSAAITACANGGRWQEAVAILSDMPNVGVRPNV 81

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP 152
            + N  +     +   + A  +LR + +AGL                            P
Sbjct: 82  ISCNAAIKAWGEAGQWQHALSILRGMSKAGLS---------------------------P 114

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D + +N  I+A G +G  ++A ++++EM+     ++P  +T  + + A A  G   + R+
Sbjct: 115 DAISYNTAISALGVAGQSEQAQELMSEMSR--LGIEPTVVTYNSAIAAIARGGG-GQWRQ 171

Query: 213 VYKMIHKYNIKG-TPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
              ++   ++ G TP+   Y   I  C + G W+ A SV   M K+G+  D +  SA I 
Sbjct: 172 AVALVKHMSLAGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAIS 231

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
             G AG+ E +  +L EAK+ GI+  +++Y++ + AC++A    KA  L + M S  ++P
Sbjct: 232 ACGEAGQWEYSVGLLAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRP 291

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEVG 385
             +   +LI AL    Q  + +E+L  M  +G   N + Y+ L+ +       K + E G
Sbjct: 292 DAAAFTSLIAALGHDGQWTQAVEILESMPKMGAPRNAMVYNALITSWANAEVAKGEEEGG 351

Query: 386 LMLL 389
            +LL
Sbjct: 352 ALLL 355


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 182/374 (48%), Gaps = 19/374 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           + G++ E  +LL+++  +GL     +Y     ++CKS +  +      +++     PTL 
Sbjct: 94  KAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLI 153

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFENV 150
           TFN L+S C   K+ E A  +L+ +  +G+KAD   Y TL+    K+G++   + + E +
Sbjct: 154 TFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERM 213

Query: 151 K-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           K     PD V +++ +    +SG V  A  VL +M    H  DP+ +T   ++     +G
Sbjct: 214 KASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHH--DPNVVTYNTILDGLCKSG 271

Query: 206 QVDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           ++D A E+ + +   +  G   V Y+  ++   + G  + A SV + M + G  PD V  
Sbjct: 272 KIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTY 331

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           S+L++    AGK+E A E ++E   +G     ++Y SL+    +     +A  + E M S
Sbjct: 332 SSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSS 391

Query: 325 IKLK-----PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
                    P+VST NALI  LC   ++   ++    M+S G  P+ ++YS ++    R 
Sbjct: 392 GGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARS 451

Query: 380 DDVEVGLMLLSQAK 393
                  M+LS+ +
Sbjct: 452 GRALQAEMILSEVR 465



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 167/372 (44%), Gaps = 27/372 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----- 87
           N   +QGR  +C  LLE M  + +      Y+     +CK ++   EA    + +     
Sbjct: 18  NGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER-WHEAEELVRDMISRGG 76

Query: 88  -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA- 145
              P + T++ L+S    +   E + ++L+ V   GL+ D  +YT ++ +  KS ++   
Sbjct: 77  RSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEA 136

Query: 146 -------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                  +     P  + FN LI+ C +   ++ A  +L +M A    V  D +T   LM
Sbjct: 137 LELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAA--SGVKADVVTYNTLM 194

Query: 199 KACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKK 255
                AG   R +E  +++ +    G  P+V  Y+  +    ++G    A  V + M   
Sbjct: 195 DGLCKAG---RLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDS 251

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGACSNAKNWQK 314
              P+ V  + ++D    +GK++ A E++++ A + G  + ++ YS+++         Q+
Sbjct: 252 HHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQE 311

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL-- 372
           A  + E M     +P V T ++L+  LC   ++ + +E + +M   G  PN +TY  L  
Sbjct: 312 ARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVH 371

Query: 373 -LVACERKDDVE 383
            L +C R  + E
Sbjct: 372 GLCSCGRLAEAE 383



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 136/290 (46%), Gaps = 4/290 (1%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           +++P+ V +N L+    +      A +++ +M +      PD +T   L+     AG+V+
Sbjct: 40  DIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVE 99

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            +RE+ K +    ++    +YT  +    ++     A  + ++M + G  P  +  + LI
Sbjct: 100 ESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLI 159

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                   +E A  +LQ+    G+   +++Y++LM     A   Q+A +L E MK+    
Sbjct: 160 SGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCA 219

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P V   ++ +  LC   ++    +VL  M+     PN +TY+ +L    +   ++  L +
Sbjct: 220 PDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEM 279

Query: 389 LSQ-AKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQI 435
           + Q A  DG   N+V +  ++ G+C   R ++AR++ E  ++    RP +
Sbjct: 280 MEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVME-AMARAGCRPDV 328



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 2/164 (1%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M + G  P+ V  +AL++     G+      +L+    + I   ++SY+ L+      + 
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 312 WQKALELYEHM--KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
           W +A EL   M  +  +  P + T + L++  C   ++ ++ E+L ++ S GL P+ + Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           + ++ +  +   +   L LL +    G  P L+ F  +I  C R
Sbjct: 121 TKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCR 164


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 182/374 (48%), Gaps = 28/374 (7%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A+ V   L  YN LI    R  ++ E   LL DM  KG+      Y A F N+      I
Sbjct: 514 ANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGA-FINLYSKSGEI 572

Query: 78  KEAFRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           + A R+FK      +VPN  + T  ++   C      E A    + + E GL  D + Y+
Sbjct: 573 QVAERYFKDMLSSGIVPNNVIYTI-LIKGHCDVGNTVE-ALSTFKCMLEKGLIPDIRAYS 630

Query: 132 TLITTCAKSGKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
            +I + +K+GK  +AM          V PD  ++N+LI+   + G +++A  +  EM   
Sbjct: 631 AIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEM--- 687

Query: 184 VHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
           +H  ++P+ +    L+      G+V +ARE++  I + ++      Y+  I+   ++G+ 
Sbjct: 688 LHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNL 747

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS-YSS 301
             A  ++D+M  KG+ PD      LID  G  G +E A  +  EA+ +  SVG +S ++S
Sbjct: 748 TEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQK--SVGSLSAFNS 805

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+ +        +A EL++ M   KL P + T   LI A    + + +  ++  DM++  
Sbjct: 806 LIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRN 865

Query: 362 LCPNTITYSILLVA 375
           + PNT+TY+ LL++
Sbjct: 866 IIPNTLTYTSLLLS 879



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 180/410 (43%), Gaps = 23/410 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA-----F 81
           +YN +I    + G +++ + L  +M   GL      Y+       KS    K        
Sbjct: 383 TYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEM 442

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +  KL P+P   T+++L+S    S D + A +VL  +   G+K +  +Y TLI    +  
Sbjct: 443 KARKLTPSPF--TYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQES 500

Query: 142 KVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           + +   E +K        PD   +N LI    ++  V+ A  +L +M  +   + P+  T
Sbjct: 501 RYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEK--GIKPNAHT 558

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
            GA +   + +G++  A   +K +    I     +YTI I      G+   A S +  M 
Sbjct: 559 YGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCML 618

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +KG+IPD    SA+I      GK + A  +  +    G+   +  Y+SL+       + +
Sbjct: 619 EKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIE 678

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA +LY+ M    + P +   N LI  LC   ++ K  E+  +++   L P+ +TYS ++
Sbjct: 679 KASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTII 738

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTL 421
               +  ++     L  +    G+ P+  ++  +I  C +    EKA +L
Sbjct: 739 DGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSL 788



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 155/341 (45%), Gaps = 11/341 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           PTL   N LM     +      ++V   + EA +  D   YT +I    K G V      
Sbjct: 205 PTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMV 264

Query: 144 -DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
              M +  KP+   +NA I    Q+GAVD A +V   M  +   + PD  T   L+    
Sbjct: 265 LSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEK--GLGPDGHTYTLLVDGFC 322

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              +   A+ +++ +    +      YT  I+   + G+ E A  + D+M  +G+  + V
Sbjct: 323 KQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVV 382

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +A+I     AG++  A  +  E    G+     +Y+ L+     + +  KA EL   M
Sbjct: 383 TYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEM 442

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           K+ KL P+  T + LI+ LC    L K  EVL  M   G+ PN   Y  L+ A  ++   
Sbjct: 443 KARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRY 502

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKC-IIGMC-SRRYEKARTL 421
           E+ + LL     +GV+P+L  + C IIG+C +++ E+A+ L
Sbjct: 503 EMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKML 543



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 157/357 (43%), Gaps = 15/357 (4%)

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           H +  +V K +  + E  +  K    P L T+N  +     +   + A +V +L+ E GL
Sbjct: 252 HCKVGDVIKGKMVLSEMEKECK----PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGL 307

Query: 124 KADCKLYTTLITTCAK---SGKVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAFD 175
             D   YT L+    K   S +   +FE+     + P+R  + ALI    + G ++ A  
Sbjct: 308 GPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALR 367

Query: 176 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
           +  EM      +  + +T  A++   A AG++ +A  ++  +    ++     Y + I+ 
Sbjct: 368 IKDEMIT--RGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDG 425

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
             ++ D   AC +  +M  + + P     S LI    H+  ++ A E+L +    G+   
Sbjct: 426 YLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPN 485

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           +  Y +L+ A      ++ A+EL + M +  + P +   N LI  LC   ++ +   +L 
Sbjct: 486 VFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLV 545

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           DM   G+ PN  TY   +    +  +++V           G++PN V++  +I G C
Sbjct: 546 DMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHC 602



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 177/391 (45%), Gaps = 29/391 (7%)

Query: 26   SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
            S  +HS   L + G+  E + +     + G++    +Y++     CK     K +  + +
Sbjct: 630  SAIIHS---LSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDE 686

Query: 86   LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            ++ N   P +  +N L++      +   A ++   ++E  L  D   Y+T+I    KSG 
Sbjct: 687  MLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGN 746

Query: 143  VDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
            +   F+         + PD  ++  LI  CG+ G +++A  +  E  A+   V       
Sbjct: 747  LTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHE--AQQKSVGSLS-AF 803

Query: 195  GALMKACANAGQVDRAREVY-KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDD 251
             +L+ +    G+V  ARE++  M+ K   K TP +  YTI I+   +    E A  ++ D
Sbjct: 804  NSLIDSFCKHGKVIEARELFDDMVDK---KLTPNIVTYTILIDAYGKAEMMEEAEQLFLD 860

Query: 252  MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAK 310
            M  + +IP+ +  ++L+      G       + ++ + +GI+   I+Y  +  A C   K
Sbjct: 861  METRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGK 920

Query: 311  NWQKALELYEH--MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            + + AL+L     ++ IKL+  V   +ALI  LC   Q+   +E+LS+M    L  ++ T
Sbjct: 921  SLE-ALKLLNKSLVEGIKLEDDV--FDALIFHLCKEKQISTVLELLSEMGKEELSLSSKT 977

Query: 369  YSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
             + LL+   +  + +    +L   +  G +P
Sbjct: 978  CNTLLLGFYKSGNEDEASKVLGVMQRLGWVP 1008



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 149/353 (42%), Gaps = 16/353 (4%)

Query: 32   YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
            YN LI    ++G I +   L ++M   G+     VY+     +CK  +  K    F ++ 
Sbjct: 664  YNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIE 723

Query: 88   PN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                 P + T++ ++     S +   AF++   +   G+  D  +Y  LI  C K G ++
Sbjct: 724  EKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLE 783

Query: 145  ---AMFENVKPDRV----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
               ++F   +   V     FN+LI +  + G V  A ++  +M  +   + P+ +T   L
Sbjct: 784  KALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDK--KLTPNIVTYTIL 841

Query: 198  MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            + A   A  ++ A +++  +   NI      YT  +   +Q G+     S++ DM  +G+
Sbjct: 842  IDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGI 901

Query: 258  IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
              D +    +       GK   A ++L ++  +GI +    + +L+      K     LE
Sbjct: 902  ACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLE 961

Query: 318  LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            L   M   +L  +  T N L+          +  +VL  M+ LG  P +++ +
Sbjct: 962  LLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSLT 1014


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 188/408 (46%), Gaps = 26/408 (6%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           +VS    SY  LI    + G++++  DL + +   G+      Y +    +C +  +  +
Sbjct: 5   NVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMAN-SFDD 63

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A   F  +      P+  T+N+++         E A  +++ + E G   D   Y T++ 
Sbjct: 64  ARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMD 123

Query: 136 TCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              KSG+V+    +F  ++     P+R   N +I    Q   +D+A  V  EM A   P 
Sbjct: 124 GLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIP- 182

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFA 245
            PD  + G L+   A AG+++ A ++++ +    I  +   Y + I+  C + T D   A
Sbjct: 183 -PDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDE--A 239

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-G 304
             ++  M  KG  P     + LID     GK++ AF +L+   + G    +++YS+L+ G
Sbjct: 240 LELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISG 299

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
            CS A+    A  L E M   + KPTV T N LI  LC   ++ +  EVL  M S G  P
Sbjct: 300 LCSIAR-VDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSP 358

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + +TY+ L+    R    E    LLS     G+ PN+V +  ++ G+C
Sbjct: 359 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLC 406



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 199/442 (45%), Gaps = 35/442 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN +I    ++G + E  DL++ M   G +     Y+     +CKS + ++EA   F  
Sbjct: 82  TYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGR-VEEALLLFNE 140

Query: 85  --KLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
             +L   P   + N +++ +C  SK  + A QV   ++   +  D   Y  LI   AK+G
Sbjct: 141 MERLGCTPNRRSHNTIILGLCQQSKIDQ-ACQVFHEMEARDIPPDSWSYGILIDGLAKAG 199

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K++  ++         + P  V +N +I     +  +D A ++   M ++     P   T
Sbjct: 200 KLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSK--GCRPSRFT 257

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYD 250
              L+ A    G++D   E ++++ +    G  P+V  Y+  I+        + A  + +
Sbjct: 258 FNILIDAHCKRGKMD---EAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLE 314

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           DM K+   P  V  + LI     AG+++ A E+L    + G S  +++Y++L+     A 
Sbjct: 315 DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAG 374

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             ++A EL   M +  L P V T  AL++ LC  ++LP+   V + MKS G  PN  TY+
Sbjct: 375 QTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYT 434

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS 430
            L++       V+ GL L  +    G+ P+ V++  +     +    AR L         
Sbjct: 435 ALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALE----ILRE 490

Query: 431 GRPQIENK-WTSLALMVYREAI 451
           GR  + ++ W      VYR A+
Sbjct: 491 GRESLRSEAWGD---EVYRFAV 509



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 141/317 (44%), Gaps = 43/317 (13%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQV 207
           NV PD   +  LI    ++G ++ A D+  ++   +H  V P  +   +L+     A   
Sbjct: 5   NVSPDSWSYGILIDGLAKAGKLNDARDLFQKL---LHSGVTPSTVAYTSLIHGLCMANSF 61

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D ARE++  +++     +P  Y + I+   + G  E AC +   M + G +PD V  + +
Sbjct: 62  DDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTV 121

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL-MGACSNAKNWQKALELYEHMKSIK 326
           +D    +G+VE A  +  E +  G +    S++++ +G C  +K   +A +++  M++  
Sbjct: 122 MDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSK-IDQACQVFHEMEARD 180

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY----------------- 369
           + P   +   LI  L    +L +  ++   M   G+ P+ +TY                 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 370 ------------------SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
                             +IL+ A  ++  ++    LL +  +DG +P++V +  +I G+
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 411 CS-RRYEKARTLNEHVL 426
           CS  R + AR L E ++
Sbjct: 301 CSIARVDDARHLLEDMV 317



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 130/318 (40%), Gaps = 34/318 (10%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M ++ V PD      LID    AGK+  A ++ Q+  + G++   ++Y+SL+     A +
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           +  A EL+  M      P+  T N +I A C    L +  +++  M   G  P+ +TY+ 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNEHVLSF 428
           ++    +   VE  L+L ++ +  G  PN      II G+C  S+  +  +  +E     
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEM---- 176

Query: 429 NSGRPQIENKWT--------------SLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 474
              R    + W+              + A  ++R  + +G  P+    + V+  + L Y 
Sbjct: 177 -EARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYT 235

Query: 475 ADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVPCV---- 527
            D    L +++        R     LID     G+ D  AF LL+     G VP V    
Sbjct: 236 LDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMD-EAFRLLKRMTDDGHVPDVVTYS 294

Query: 528 ----SFKEIPVVVDARKL 541
                   I  V DAR L
Sbjct: 295 TLISGLCSIARVDDARHL 312



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 19/262 (7%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTF 95
           R+ +   LLEDM ++         +     +CK+ + IKEA      +     +P + T+
Sbjct: 305 RVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGR-IKEAREVLDAMVSSGQSPDVVTY 363

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENVK- 151
           N L+     +  +E A ++L  +   GL  +   YT L++   K+ ++     +F  +K 
Sbjct: 364 NTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKS 423

Query: 152 ----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
               P+   + ALI     +G VD    +  EM      + PDH+  G L      +G+ 
Sbjct: 424 SGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCA--GISPDHVVYGTLAAELCKSGRS 481

Query: 208 DRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
            RA E+ +   + +++      EVY  A++     G  E A     DM + G +P     
Sbjct: 482 ARALEILRE-GRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERC 540

Query: 265 SALIDFAGHAGKVEAAFEILQE 286
           ++L+     +G+   A  +L+E
Sbjct: 541 ASLVAGLCKSGQGGEARAVLEE 562


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 184/405 (45%), Gaps = 23/405 (5%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  ++ +N LI    + G   + + L E+ME   +      Y+     +CKS    K  
Sbjct: 93  VAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKAR 152

Query: 81  FRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
               +++       P + T+N L++    +     A      ++ AG+  D      L++
Sbjct: 153 ELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVS 212

Query: 136 TCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K G V+   E +         PD + +N++I A   +G V  A ++L  M+      
Sbjct: 213 GICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCS---- 268

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            PD +T   L+     AG + RA EV + + + NI      YTI +N   + G  + A  
Sbjct: 269 -PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFY 327

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           + +++ ++G IPD +  ++L+D    +G++E A ++++E   +G   G++ YSSL+    
Sbjct: 328 LLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYC 387

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            A N  KA E+   M SI + P + T N ++  L     + K + ++SD+ + G  P+ +
Sbjct: 388 RAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVV 447

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           TY+ L+    + + V     L  +    G  PN V    ++ G+C
Sbjct: 448 TYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLC 492



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 178/423 (42%), Gaps = 80/423 (18%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFF 68
           +QF    G+   Y HDV    HSYN L+         D+L  ++        KVY     
Sbjct: 11  IQFFDWAGEQDGYKHDV----HSYNHLL---------DIL--VKSGHHFRTGKVYKDLLH 55

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           + C                 +P L TF +L+     +  +  A + LR + E  +  D  
Sbjct: 56  SGC-----------------SPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVY 98

Query: 129 LYTTLITTCAKSGKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
           ++  LI    K G  D    +FEN     VKP+ V +N +I+   +SG +++A ++L EM
Sbjct: 99  IFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEM 158

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
             +     PD +T   L+ A   A    R RE                            
Sbjct: 159 IRKGGKSAPDIVTYNTLINAFYRAS---RIRE---------------------------- 187

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
               AC+  + M   G+ PD +  + L+      G VE A EIL   K  G    +I+Y+
Sbjct: 188 ----ACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYN 243

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           S++ A   A    K +E  E +K++   P + T N L+   C    LP+ +EVL +M   
Sbjct: 244 SIIHALCVAG---KVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRE 300

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA 418
            + P+ ITY+IL+    R   V+V   LL +    G IP+++ +  ++ G+C S   E+A
Sbjct: 301 NILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEA 360

Query: 419 RTL 421
             L
Sbjct: 361 HKL 363



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 169/414 (40%), Gaps = 22/414 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           + + G + E +++L+ M+  G +     Y++    +C + K ++ A     +  +P L T
Sbjct: 214 ICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVT 273

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF------- 147
           FN L+     +     A +VL  +    +  D   YT L+    + G+V   F       
Sbjct: 274 FNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIV 333

Query: 148 -ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
            +   PD + + +L+    +SG ++ A  ++ EM+  V       +   +L+     AG 
Sbjct: 334 RQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMS--VRGCRTGVVMYSSLVSGYCRAGN 391

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           V +ARE+   +   N+      Y I +    + G    A S+  D+  +G +PD V  + 
Sbjct: 392 VHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNT 451

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LID    A +V  A ++  E  ++G     ++  S++           A  L   M   +
Sbjct: 452 LIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKR 511

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
             P V    +LI  LC  D++     VL  M+  G+  +   Y  L+V+      V   +
Sbjct: 512 HAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAM 571

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 440
            +  +    G +P+        G  S+  E+A  ++  V  + +     EN W+
Sbjct: 572 AMYDEMVARGFLPD--------GSTSKTLEEA-AMSNSVFEWTNLE---ENAWS 613


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 184/401 (45%), Gaps = 24/401 (5%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----K 75
           V+   ++Y  LIR    +GR+++ + LL+DM R+G       Y      +C++       
Sbjct: 139 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAM 198

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A+ +  R     PN  + T+N++++        + A ++L  +   G + D   YTTL+ 
Sbjct: 199 AVLDEMRAKGCTPN--IVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLK 256

Query: 136 TCAKSGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
               S + D         M +N  P+ V F+ LI    + G V+RA  VL +M    H  
Sbjct: 257 GLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTE--HGC 314

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
             +      ++ +    G+VD A ++   +  Y        YT  +    +   W+ A  
Sbjct: 315 ATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKE 374

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           + ++M +    P+EV  +  I      G +E A  ++++    G +VG+++Y++L+    
Sbjct: 375 LLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFC 434

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
              +   ALEL+   +S+  KP   T   L+T LC+ ++L    E++++M      PN +
Sbjct: 435 VQGHIDSALELF---RSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVV 491

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           T+++L+    +K  +E  + L+ Q  E G  PNL+ +  ++
Sbjct: 492 TFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLL 532



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 100/427 (23%), Positives = 184/427 (43%), Gaps = 31/427 (7%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL----KADCKLYTTLITTCAKSGKV 143
           PNP  +    L++     +D  GA   +RLV+ +G       D  L T LI    + G+ 
Sbjct: 40  PNPASAHLRRLIA----REDLAGA---VRLVERSGSCDGEAPDVYLCTKLIRNLCRRGRT 92

Query: 144 DAMFENVKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                 ++         D   +N L+    + G +D A  ++  M     PV PD  T  
Sbjct: 93  SDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSM-----PVAPDAYTYT 147

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            L++   + G+V  A  +   + +   +     YT+ +    +   +E A +V D+M  K
Sbjct: 148 PLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAK 207

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  P+ V  + +I+     G+V+ A E+L    + G     +SY++L+     +K W   
Sbjct: 208 GCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDV 267

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            EL+  M      P   T + LI   C G  + + ++VL  M   G   NT   +I++ +
Sbjct: 268 EELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINS 327

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRP 433
             ++  V+    LL+     G  P+ + +  ++ G+C + R++ A+ L   ++  N   P
Sbjct: 328 ICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNC--P 385

Query: 434 QIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL--QLPYNADIRERLVENLGVSADA 491
             E  + +   ++ ++ ++   I  +E +S+  GC    + YNA +    V+    SA  
Sbjct: 386 PNEVTFNTFICILCQKGLIEQAIMLIEQMSE-HGCTVGVVTYNALVNGFCVQGHIDSALE 444

Query: 492 LKRSNLC 498
           L RS  C
Sbjct: 445 LFRSMPC 451



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/414 (20%), Positives = 169/414 (40%), Gaps = 51/414 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAF-RFFKLVPN 89
           N + R+GR+ +  +LL  +   G       Y      +C S++   ++E F    +    
Sbjct: 221 NGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCM 280

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   TF+ML+         E A QVL  + E G   +  L   +I +  K G+VD  F+ 
Sbjct: 281 PNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKL 340

Query: 149 ------------------------------------------NVKPDRVVFNALITACGQ 166
                                                     N  P+ V FN  I    Q
Sbjct: 341 LNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQ 400

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
            G +++A  ++ +M+   H      +T  AL+      G +D A E+++ +     K   
Sbjct: 401 KGLIEQAIMLIEQMSE--HGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPNT 455

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             YT  +         + A  +  +M +    P+ V  + L+ F    G +E A E++++
Sbjct: 456 ITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQ 515

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               G +  +I+Y++L+   +   + + ALEL   + S  + P V T +++I  L   D+
Sbjct: 516 MMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDR 575

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           + + +++   ++ +G+ P  + Y+ +L+   ++ +++  +   +    +G +PN
Sbjct: 576 IEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPN 629



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 141/344 (40%), Gaps = 35/344 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + +QGR+ +   LL DM   G       Y      +C++++         ++V N   
Sbjct: 326 NSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCP 385

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P   TFN  + +       E A  ++  + E G                           
Sbjct: 386 PNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGV---------------------- 423

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
                V +NAL+      G +D A ++   M     P  P+ IT   L+    NA ++D 
Sbjct: 424 -----VTYNALVNGFCVQGHIDSALELFRSM-----PCKPNTITYTTLLTGLCNAERLDG 473

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A E+   + + +       + + ++   Q G  E A  + + M + G  P+ +  + L+D
Sbjct: 474 AAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLD 533

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                   E A E+L    ++G+S  +I++SS++G  S     ++A++L+  ++ I ++P
Sbjct: 534 GITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRP 593

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
                N ++  LC   ++   ++  + M S G  PN  TY IL+
Sbjct: 594 KAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILI 637


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 181/366 (49%), Gaps = 23/366 (6%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +Y+ L+    + G++ E  +LL+++  +GL     +Y     ++CKS +  +      
Sbjct: 82  LVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLE 141

Query: 85  KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +++     PTL TFN L+S C   K+ E A  +L+ +  +G+KAD   Y TL+    K+G
Sbjct: 142 EMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAG 201

Query: 142 KV---DAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++   + + E +K     PD V +++ +    +SG V  A  VL +M    H  DP+ +T
Sbjct: 202 RLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDH--DPNVVT 259

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDM 252
              ++     +G++D A E+ + +   +  G   V Y+  ++   + G  + A SV + M
Sbjct: 260 YNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAM 319

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            + G  PD V  S+L++    AGK+E A E ++E   +G     ++Y SL+    +    
Sbjct: 320 ARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRL 379

Query: 313 QKALELYEHMKSI-----KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            +A  + E M S         P+VST NALI  LC   ++   ++    M+S G  P+ +
Sbjct: 380 AEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGV 439

Query: 368 TYSILL 373
           +YS ++
Sbjct: 440 SYSTIV 445



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/397 (23%), Positives = 173/397 (43%), Gaps = 23/397 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----- 87
           N   +QGR  +C  LLE M  +G+      Y+     +CK ++   EA    + +     
Sbjct: 18  NGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER-WHEAEELVRDMISRGG 76

Query: 88  -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA- 145
              P L T++ L+S    +   E + ++L+ V   GL+ D  +YT ++ +  KS ++   
Sbjct: 77  RSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEA 136

Query: 146 -------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                  +     P  + FN LI+ C +   ++ A  +L  M A    V  D +T   LM
Sbjct: 137 LELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAA--SGVKADVVTYNTLM 194

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                AG++  A ++ + +           Y+  +    ++G    A  V + M      
Sbjct: 195 DGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHD 254

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGACSNAKNWQKALE 317
           P+ V  + ++D    +GK++ A E++++ A + G  + ++ YS+++         Q+A  
Sbjct: 255 PNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARS 314

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LV 374
           + E M     +P V T ++L+  LC   ++ + +E + +M   G  PN +TY  L   L 
Sbjct: 315 VMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLC 374

Query: 375 ACERKDDVE--VGLMLLSQAKEDGVIPNLVMFKCIIG 409
           +C R  + E  V  M       D   P++  +  +IG
Sbjct: 375 SCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIG 411



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 134/290 (46%), Gaps = 4/290 (1%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            ++P+ V +N L+    +      A +++ +M +      PD +T   L+     AG+V+
Sbjct: 40  GIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVE 99

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            +RE+ K +    ++    +YT  +    ++     A  + ++M + G  P  +  + LI
Sbjct: 100 ESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLI 159

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                   +E A  +LQ     G+   +++Y++LM     A   Q+A +L E MK+    
Sbjct: 160 SGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCA 219

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P V   ++ +  LC   ++    +VL  M+     PN +TY+ +L    +   ++  L +
Sbjct: 220 PDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEM 279

Query: 389 LSQ-AKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQI 435
           + Q A  DG   N+V +  ++ G+C   R ++AR++ E  ++    RP +
Sbjct: 280 MEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVME-AMARAGCRPDV 328



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 78/164 (47%), Gaps = 2/164 (1%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M + G  P+ V  +AL++     G+      +L+    +GI   ++SY+ L+      + 
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 312 WQKALELYEHM--KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
           W +A EL   M  +  +  P + T + L++  C   ++ ++ E+L ++ S GL P+ + Y
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           + ++ +  +   +   L LL +    G  P L+ F  +I  C R
Sbjct: 121 TKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCR 164


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 154/307 (50%), Gaps = 13/307 (4%)

Query: 113 QVLRLVQE---AGLKADCKLYTTLITTCAKSGKVD--------AMFENVKPDRVVFNALI 161
           +VL+L+QE    GLK +   Y ++I    KSGKVD         + + + PD VV+  LI
Sbjct: 28  KVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLI 87

Query: 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
               + G +  A+ +  EM  E   + PD I   A++      G++  A +V+  +    
Sbjct: 88  DGFCKLGNIQAAYKLFDEM--EKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRG 145

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           ++     YT  I+   ++G+ E A S+++ M + G+ P+ V  +AL D     G+V+ A 
Sbjct: 146 VEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTAN 205

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           E+L E   +G+ + I +Y+SL+     + N ++A++L E M+   + P   T   L+ A 
Sbjct: 206 ELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAY 265

Query: 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
           C   ++ K  E+L +M   GL P  IT+++L+        +E G  LL+   E G++PN 
Sbjct: 266 CKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNT 325

Query: 402 VMFKCII 408
             +  ++
Sbjct: 326 TTYNSLM 332



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 162/347 (46%), Gaps = 15/347 (4%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           G + + + L+++M+ KGL      Y++    +CKS K + +A R  + + N    P    
Sbjct: 24  GELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK-VDDAERVLREMINQGIVPDTVV 82

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAMF 147
           +  L+       + + A+++   +++  +  D   YT +I    + GK+       + MF
Sbjct: 83  YTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMF 142

Query: 148 -ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              V+PD V +  LI    +SG +++AF +  +M      + P+ +T  AL       GQ
Sbjct: 143 SRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQ--SGLTPNVVTYTALADGLCKLGQ 200

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           VD A E+   +    ++     Y   +N   ++G+   A  + ++M   G+ PD +  + 
Sbjct: 201 VDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTT 260

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           L+D     G++  A E+L+E  ++G+   +I+++ LM     +   +    L   M    
Sbjct: 261 LMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKG 320

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           + P  +T N+L+   C  + +  T E+   M + G+ P++ TY+IL+
Sbjct: 321 IMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILI 367



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 162/368 (44%), Gaps = 13/368 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTF 95
           G I     L ++ME++ ++     Y A    +C+  K ++    F K+      P   T+
Sbjct: 94  GNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTY 153

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
             L+     S + E AF +   + ++GL  +   YT L     K G+VD   E       
Sbjct: 154 TTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCG 213

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             ++ +   +N+L+    +SG + +A  ++ EM  EV  + PD IT   LM A    G++
Sbjct: 214 KGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEM--EVAGMYPDTITFTTLMDAYCKTGEM 271

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
            +A E+ + +    ++ T   + + +N    +G  E    +   M +KG++P+    ++L
Sbjct: 272 VKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSL 331

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           +        +    EI +    +G+     +Y+ L+     A+N ++A  L++ M     
Sbjct: 332 MKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGF 391

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
             T S+ N++I       ++ +  E+  +M+  G+  +   Y++ +     + ++E  L 
Sbjct: 392 NLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYGEGNMETALE 451

Query: 388 LLSQAKED 395
           L  +A E+
Sbjct: 452 LCDEAIEN 459



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 96/189 (50%), Gaps = 3/189 (1%)

Query: 226 PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
           P+V  Y+  IN     G+ +    +  +M  KG+ P+    +++I     +GKV+ A  +
Sbjct: 8   PDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERV 67

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           L+E  NQGI    + Y++L+       N Q A +L++ M+  ++ P      A+I  LC 
Sbjct: 68  LREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCR 127

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
             ++ +  +V + M S G+ P+ +TY+ L+    +  ++E    L +Q  + G+ PN+V 
Sbjct: 128 CGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVT 187

Query: 404 FKCII-GMC 411
           +  +  G+C
Sbjct: 188 YTALADGLC 196



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 108/229 (47%), Gaps = 11/229 (4%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT----IAINCCSQTGDWE 243
           PD ++   ++      G++ +   V K+I +  +KG  P +YT    I + C  ++G  +
Sbjct: 8   PDVVSYSTVINGYCLGGELQK---VLKLIQEMQMKGLKPNLYTYNSIILLLC--KSGKVD 62

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  V  +M  +G++PD V  + LID     G ++AA+++  E + Q I    I+Y++++
Sbjct: 63  DAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVI 122

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                     +A +++  M S  ++P   T   LI   C   ++ K   + + M   GL 
Sbjct: 123 CGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLT 182

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           PN +TY+ L     +   V+    LL +    G+  N+  +  ++ G+C
Sbjct: 183 PNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLC 231



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/255 (21%), Positives = 112/255 (43%), Gaps = 20/255 (7%)

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           K +G +  ++SYS+++         QK L+L + M+   LKP + T N++I  LC   ++
Sbjct: 2   KFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKV 61

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
                VL +M + G+ P+T+ Y+ L+    +  +++    L  + ++  ++P+ + +  +
Sbjct: 62  DDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAV 121

Query: 408 I-GM--CSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIV 452
           I G+  C +  E  +  N+    F+ G    E  +T+L            A  ++ + + 
Sbjct: 122 ICGLCRCGKMMEADKVFNKM---FSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQ 178

Query: 453 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--R 510
           +G  P V   + +   L      D    L+  +      L      SL++G  +     +
Sbjct: 179 SGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQ 238

Query: 511 AFSLLEEAASFGIVP 525
           A  L+EE    G+ P
Sbjct: 239 AVKLMEEMEVAGMYP 253


>gi|412993289|emb|CCO16822.1| predicted protein [Bathycoccus prasinos]
          Length = 1164

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 165/636 (25%), Positives = 262/636 (41%), Gaps = 106/636 (16%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA----------- 138
            P   T++ LMS C ++ + + A  +   ++  G+     +Y T I  CA           
Sbjct: 496  PDAITYSSLMSGCVNAGEPQRALALYDEMETKGVARTASVYATAIHACATEYDYDNSAPN 555

Query: 139  --KSGKVDAMFENVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
              K+ K+    +  KP    D V++  ++T   ++G V+   +++ EM      + P  +
Sbjct: 556  YRKAFKIWEEVQQNKPRVVVDPVLYATILTVASRAGNVEMCANLIREMEMNGSMMSPAVV 615

Query: 193  T--IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +   G+  +A  +AG VDR   +     K N       Y   IN  ++  D E A   YD
Sbjct: 616  SNMCGSFARA-GDAGAVDR---ILSDAEKSNEIVPRACYNALINSFARDADLEGATKAYD 671

Query: 251  DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
             + + G  PDE+    LI  A  A K E     L EAK                     K
Sbjct: 672  RLIESGQSPDEITFEGLILAA--AKKTE----TLAEAK---------------------K 704

Query: 311  NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
              Q+AL+L        L+PT+ T NAL+        L KT   +  MK  G  P+ +T+ 
Sbjct: 705  LLQEALDL-------GLRPTLPTYNALVRGFGRAGDLNKTYATVKAMKYAGYTPDEMTWR 757

Query: 371  ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE------- 423
             LL +C R  +  +       ++  G+ P  V    I+G         RTL +       
Sbjct: 758  ELLFSCARHGNCLLAWDAYKSSRAAGIAPCEVTLNTILGAI---LAHIRTLTDPTRLASD 814

Query: 424  ---HVLSFNSGRPQIEN--------KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLP 472
               H L+  +   +I +        +W   A  V+ EA   G  P VE  S +L CL+ P
Sbjct: 815  KPGHGLTDTTTSGEIASSVAQPAWKEWADRATAVFHEATTHGVKPRVETFSSMLACLRPP 874

Query: 473  YNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP-RAFSLLEEAASFGIVPCVSFKE 531
             + ++  +L    G  + A   ++  ++ +    Y P +A  L EEA + GIVP     E
Sbjct: 875  TDQEV--QLASKYGGESLARLVTHQSNVHEDAATYYPTKALILFEEAQAIGIVPQFEMSE 932

Query: 532  IPVVVDARKLEIHTAKVYLLTILKGL-RHRLAAGAK-----LPNVNILLPVEKTQIM--- 582
                 D R      A+V LLT+++ + RH  A G K     LP   +L+  EK +++   
Sbjct: 933  -DSEYDMRNFPPAAAEVALLTLIRKIKRHVEAHGEKDLKNRLPTFTLLV-REKPEMLVDE 990

Query: 583  ------SVGGEKTIDIA-----ERTTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWF 631
                  S   E   D       ERT + +  LLRRL + Y G+   GKI ++   + RW 
Sbjct: 991  DGYLVSSSADESLADRGATRRLERTGERLVVLLRRLRINYAGSLERGKIELSSHIMYRWI 1050

Query: 632  QPKLASPFSGKPGELSSLQLGKFITHQQRNIRTGNL 667
              K ++P +  PG     +L   IT Q   IR+ ++
Sbjct: 1051 HGKSSAPHA-LPG--MEARLADDITMQAMRIRSRDM 1083



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 175/440 (39%), Gaps = 82/440 (18%)

Query: 17  KHANYA-------HDVSEQLHSYNRLIRQGRISECIDLLE---DMERKGLLDMDKVYHAR 66
           K+ N+A       +D    +  Y+ L+R  R+ + IDLL+   D +   L D     H  
Sbjct: 224 KYPNFADCLGPKKYDSGHFIRLYSDLVRCDRLGDAIDLLQRLSDAKVPCLNDTRIRKHGT 283

Query: 67  --FFNVCK-----SQKAIKEAFRFFKLV--------PNPTLST-FNMLMSVCASSKDSEG 110
             F   C+     S   +  AF F  LV         N  ++T +N L++VC++  D E 
Sbjct: 284 VDFLVSCERSNKLSNSPVTHAFTFTNLVLGAAREELSNAEVATIYNKLLAVCSAHGDCEA 343

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAV 170
           A +         +K D K  T                     D +   +LI A G++G V
Sbjct: 344 AAKAFEQ-----MKQDPKGLTI--------------------DVITHTSLIVAYGKAGKV 378

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
           D AFD    M  +   ++P  +T GALM A +           +K  +K +I    +   
Sbjct: 379 DLAFDQFNTMTKK-DKIEPTIVTYGALMDALSREVGRRSGNGGFKSNNKKDISYVKDALD 437

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA--------AFE 282
              N  S             D+   G+  D   L+ L+   G A   E         AF+
Sbjct: 438 RVFNLRS-------------DLQASGLHMDVRVLNCLVSACGRAAAFEELRTDALDRAFD 484

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           I+ E++  G+    I+YSSLM  C NA   Q+AL LY+ M++  +  T S     I A  
Sbjct: 485 IVAESRRNGLFPDAITYSSLMSGCVNAGEPQRALALYDEMETKGVARTASVYATAIHACA 544

Query: 343 ---DGD----QLPKTMEVLSDMKS--LGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
              D D       K  ++  +++     +  + + Y+ +L    R  +VE+   L+ + +
Sbjct: 545 TEYDYDNSAPNYRKAFKIWEEVQQNKPRVVVDPVLYATILTVASRAGNVEMCANLIREME 604

Query: 394 EDGVIPNLVMFKCIIGMCSR 413
            +G + +  +   + G  +R
Sbjct: 605 MNGSMMSPAVVSNMCGSFAR 624


>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 917

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 157/339 (46%), Gaps = 11/339 (3%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------- 142
           T+  F+ L+S    S   E A  V   ++E GL+ +   Y  +I  C K G         
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326

Query: 143 VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M  N V+PDR+ FN+L+  C + G  + A ++  EM+     ++ D  +   L+ A 
Sbjct: 327 FDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNR--RIEQDVFSYNTLLDAI 384

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              GQ+D A E+   +    I      Y+  I+  ++ G ++ A +++ +M    +  D 
Sbjct: 385 CKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDR 444

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L+      G+ E A +IL+E  + GI   +++Y++L+G       + +  +++  
Sbjct: 445 VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAE 504

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK   + P + T + LI     G    + MEV  + KS GL  + + YS L+ A  +   
Sbjct: 505 MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSALIDALCKNGL 564

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 420
           V   + L+ +  ++G+ PN+V +  II    R     R+
Sbjct: 565 VGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERS 603



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 110/463 (23%), Positives = 186/463 (40%), Gaps = 80/463 (17%)

Query: 15  NGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
           +G + N  +  S  + +Y R    G   E I +   M+  GL      Y+A      K  
Sbjct: 261 SGGYGNTVYAFSALISAYGR---SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGG 317

Query: 75  KAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
              K+  +FF  +      P   TFN L++VC+     E A  +   +    ++ D   Y
Sbjct: 318 MEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEAARNLFDEMSNRRIEQDVFSY 377

Query: 131 TTLITTCAKSGKVDAMFE------------------------------------------ 148
            TL+    K G++D  FE                                          
Sbjct: 378 NTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRY 437

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
            N+  DRV +N L++   + G  + A D+L EM A V  +  D +T  AL+      G+ 
Sbjct: 438 LNIALDRVSYNTLLSIYTKVGRSEEALDILREM-ASVG-IKKDVVTYNALLGGYGKQGKY 495

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D  ++V+  + + ++      Y+  I+  S+ G ++ A  V+ +    G+  D V  SAL
Sbjct: 496 DEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEVFREFKSAGLRADVVLYSAL 555

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ID     G V +A  ++ E   +GIS  +++Y+S++ A   +   +++ + Y +  S+  
Sbjct: 556 IDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMERSAD-YSNGGSLPF 614

Query: 328 KPT--------------------VSTMNALITALC-DGDQ-LPKTMEVLSDMKSLGLCPN 365
             +                     S  N  +T  C +G Q L   +EV   M  L + PN
Sbjct: 615 SSSALSELTETEGNRVIQLFGQLTSEGNNRMTKDCKEGMQELSCILEVFRKMHQLEIKPN 674

Query: 366 TITYSILLVACERKDDVEVGLMLLSQ-----AKEDGVIPNLVM 403
            +T+S +L AC R +  E   MLL +      K  GV+  L+M
Sbjct: 675 VVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM 717



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 110/226 (48%), Gaps = 3/226 (1%)

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           A++      G+V  A+ +++         T   ++  I+   ++G  E A SV++ M + 
Sbjct: 238 AMISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY 297

Query: 256 GVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           G+ P+ V  +A+ID  G  G + +   +   E +   +    I+++SL+  CS    W+ 
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCSRGGLWEA 357

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A  L++ M + +++  V + N L+ A+C G Q+    E+L+ M +  + PN ++YS ++ 
Sbjct: 358 ARNLFDEMSNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPAKRIMPNVVSYSTVID 417

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
              +    +  L L  + +   +  + V +  ++ + ++  R E+A
Sbjct: 418 GFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTKVGRSEEA 463



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 6/145 (4%)

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
           C    G +EFA        ++G +      SA+I   G  GKV  A  I + A + G   
Sbjct: 212 CDKAVGFYEFAVKRERRKNEQGKLA-----SAMISTLGRYGKVTIAKRIFETAFSGGYGN 266

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD-QLPKTMEV 353
            + ++S+L+ A   +   ++A+ ++  MK   L+P + T NA+I A   G  +  +  + 
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326

Query: 354 LSDMKSLGLCPNTITYSILLVACER 378
             +M+   + P+ IT++ LL  C R
Sbjct: 327 FDEMQRNCVQPDRITFNSLLAVCSR 351


>gi|403366299|gb|EJY82949.1| hypothetical protein OXYTRI_19434 [Oxytricha trifallax]
          Length = 1420

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/415 (24%), Positives = 185/415 (44%), Gaps = 66/415 (15%)

Query: 71   CKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
            C  +K ++ AF  F L+      P   T+N L+  C        A+Q+L  +Q+  +  D
Sbjct: 594  CAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAWQLLSEMQQNNIVPD 653

Query: 127  CKLYTTLIT-----TCAKSG--------KVDAMFEN-------VKPDRVVFNALITACGQ 166
               Y+TLI        +++G        K  A+ E        VKPD +++N LI AC +
Sbjct: 654  NFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQMKQSNGGVKPDEILYNCLIDACVR 713

Query: 167  SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
               V+RA  V  EM  +   + P  +T G L+KA  +A Q+D A  V+K +    +    
Sbjct: 714  FHDVNRAVAVFQEM--QFSNIKPSSVTYGILIKAYGSANQLDNAFFVFKKMKDNCLIPNS 771

Query: 227  EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
              Y   I+ C +    E A  V++ M + GV  + +  + LI     + K++ A E+ Q 
Sbjct: 772  VTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSFKLDQALEVYQI 831

Query: 287  AK-NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS--IKLKPTVSTMNALITALCD 343
             K +  I    ++++SL+  C    + +KA+E++E MK      KP + T + +I   C 
Sbjct: 832  MKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPDLITYSTMIKGFCR 891

Query: 344  GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM---------------- 387
               + + + +L+DM+   +  + + Y+ LL  C + +++E+ L                 
Sbjct: 892  EKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCCKANEIEMALKVYKNMEILKIKPSNVT 951

Query: 388  -------------------LLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTL 421
                               +L + K+DG+ P L+++ C++  C  SR+ + A  L
Sbjct: 952  YSILIKIYGKQRNLPKALGVLEEMKKDGIRPGLIVYTCLLQTCIKSRQLKTAEQL 1006



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 166/348 (47%), Gaps = 21/348 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   +FN ++  CA  K  + AF++  L++   LK +   Y +LI  C +  ++++ ++ 
Sbjct: 582 PDEISFNTIIKGCAQEKKLQLAFEMFNLMKMQCLKPNDVTYNSLIDACVRCNRLNSAWQL 641

Query: 149 -------NVKPDRVVFNALI--------TACGQSGAVD--RAFDVLAEMNAEVHPVDPDH 191
                  N+ PD   ++ LI        +  G S  +D  +AF +L +M      V PD 
Sbjct: 642 LSEMQQNNIVPDNFTYSTLIKGIRAENQSQNGISNPMDLEKAFALLEQMKQSNGGVKPDE 701

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           I    L+ AC     V+RA  V++ +   NIK +   Y I I         + A  V+  
Sbjct: 702 ILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVTYGILIKAYGSANQLDNAFFVFKK 761

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M    +IP+ V    LID      ++E A E+ +  K  G+ +  I +++L+   + +  
Sbjct: 762 MKDNCLIPNSVTYGCLIDACVKNNQIERAMEVFETMKRDGVQLNTIIFTTLIKGFAKSFK 821

Query: 312 WQKALELYEHMK-SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--LGLCPNTIT 368
             +ALE+Y+ MK   K+KP   T N+LI      + + K ME+  +MK       P+ IT
Sbjct: 822 LDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIFEEMKQPISHTKPDLIT 881

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
           YS ++    R+ +++  L++L+  +++ ++ + V++  ++  C +  E
Sbjct: 882 YSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCCKANE 929



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 154/353 (43%), Gaps = 50/353 (14%)

Query: 107  DSEGAFQVLRLVQEA--GLKADCKLYTTLITTCAKSGKVD--------AMFENVKPDRVV 156
            D E AF +L  ++++  G+K D  LY  LI  C +   V+          F N+KP  V 
Sbjct: 679  DLEKAFALLEQMKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFSNIKPSSVT 738

Query: 157  FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
            +  LI A G +  +D AF V  +M      + P+ +T G L+ AC    Q++RA EV++ 
Sbjct: 739  YGILIKAYGSANQLDNAFFVFKKMKDNC--LIPNSVTYGCLIDACVKNNQIERAMEVFET 796

Query: 217  IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAG 275
            + +  ++    ++T  I   +++   + A  VY  M     I P+ V  ++LID      
Sbjct: 797  MKRDGVQLNTIIFTTLIKGFAKSFKLDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCN 856

Query: 276  KVEAAFEILQEAKN-------------------------------------QGISVGIIS 298
             ++ A EI +E K                                        I    + 
Sbjct: 857  SIKKAMEIFEEMKQPISHTKPDLITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVL 916

Query: 299  YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
            Y+SL+  C  A   + AL++Y++M+ +K+KP+  T + LI        LPK + VL +MK
Sbjct: 917  YNSLLDGCCKANEIEMALKVYKNMEILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMK 976

Query: 359  SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
              G+ P  I Y+ LL  C +   ++    L    +  G+  + + ++ +I  C
Sbjct: 977  KDGIRPGLIVYTCLLQTCIKSRQLKTAEQLFHDMRIQGIRGDQLTYQTMINGC 1029



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 189/421 (44%), Gaps = 43/421 (10%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTL 92
           R  R+ + +++L  M+ +G+   D+V +    + C     I +AF  +  +      PT 
Sbjct: 378 RAQRLPQALNVLSIMKERGI-KPDEVLYNSIIDGCSKNNQIAKAFLLYDEMLGEGVTPTT 436

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL---ITTCAKSGKVDAMF-- 147
            TFN L+  C  S + + A++VL  ++E  +K D   Y+TL   I +  +   ++  F  
Sbjct: 437 ITFNSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYSTLFKGIKSENQRQDLEKAFVL 496

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV-------DPDH-I 192
                   +  PD ++FN L+ AC     +DRA ++  ++  +  P        D D+ +
Sbjct: 497 YNQLQNSNDFTPDEILFNVLLDACINCKQLDRAVELFKQLKPQSQPQIQVSNTDDADNSL 556

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           ++     +  NA  V     V    H + ++     +   I  C+Q    + A  +++ M
Sbjct: 557 SLEDSPDSAKNAPAV-----VNSSNHHF-MRPDEISFNTIIKGCAQEKKLQLAFEMFNLM 610

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM--------- 303
             + + P++V  ++LID      ++ +A+++L E +   I     +YS+L+         
Sbjct: 611 KMQCLKPNDVTYNSLIDACVRCNRLNSAWQLLSEMQQNNIVPDNFTYSTLIKGIRAENQS 670

Query: 304 -GACSNAKNWQKALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
               SN  + +KA  L E MK     +KP     N LI A      + + + V  +M+  
Sbjct: 671 QNGISNPMDLEKAFALLEQMKQSNGGVKPDEILYNCLIDACVRFHDVNRAVAVFQEMQFS 730

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 420
            + P+++TY IL+ A    + ++    +  + K++ +IPN V + C+I  C +  +  R 
Sbjct: 731 NIKPSSVTYGILIKAYGSANQLDNAFFVFKKMKDNCLIPNSVTYGCLIDACVKNNQIERA 790

Query: 421 L 421
           +
Sbjct: 791 M 791



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 121/266 (45%), Gaps = 17/266 (6%)

Query: 73   SQKAIKEAFRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
            S   +  AF  FK      L+PN    T+  L+  C  +   E A +V   ++  G++ +
Sbjct: 748  SANQLDNAFFVFKKMKDNCLIPNSV--TYGCLIDACVKNNQIERAMEVFETMKRDGVQLN 805

Query: 127  CKLYTTLITTCAKSGKVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVL 177
              ++TTLI   AKS K+D   E          +KP+ V FN+LI  C +  ++ +A ++ 
Sbjct: 806  TIIFTTLIKGFAKSFKLDQALEVYQIMKMDDKIKPNNVTFNSLIDCCIRCNSIKKAMEIF 865

Query: 178  AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
             EM   +    PD IT   ++K       + +A  +   + K NI     +Y   ++ C 
Sbjct: 866  EEMKQPISHTKPDLITYSTMIKGFCREKNIQQALIMLNDMEKNNIMADEVLYNSLLDGCC 925

Query: 238  QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
            +  + E A  VY +M    + P  V  S LI   G    +  A  +L+E K  GI  G+I
Sbjct: 926  KANEIEMALKVYKNMEILKIKPSNVTYSILIKIYGKQRNLPKALGVLEEMKKDGIRPGLI 985

Query: 298  SYSSLMGACSNAKNWQKALELYEHMK 323
             Y+ L+  C  ++  + A +L+  M+
Sbjct: 986  VYTCLLQTCIKSRQLKTAEQLFHDMR 1011



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 41/81 (50%)

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T + +I   C   +LP+ + VLS MK  G+ P+ + Y+ ++  C + + +    +L  + 
Sbjct: 368 TFSCMIKGYCRAQRLPQALNVLSIMKERGIKPDEVLYNSIIDGCSKNNQIAKAFLLYDEM 427

Query: 393 KEDGVIPNLVMFKCIIGMCSR 413
             +GV P  + F  +I  C R
Sbjct: 428 LGEGVTPTTITFNSLIDCCVR 448



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 5/152 (3%)

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
           +K+Q   + ++++S ++     A+   +AL +   MK   +KP     N++I      +Q
Sbjct: 357 SKDQPNCMDMMTFSCMIKGYCRAQRLPQALNVLSIMKERGIKPDEVLYNSIIDGCSKNNQ 416

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN----LV 402
           + K   +  +M   G+ P TIT++ L+  C R  + +    +L Q KE  V P+      
Sbjct: 417 IAKAFLLYDEMLGEGVTPTTITFNSLIDCCVRSGNQDQAWRVLEQMKEKQVKPDNYTYST 476

Query: 403 MFKCIIGMCSRR-YEKARTLNEHVLSFNSGRP 433
           +FK I     R+  EKA  L   + + N   P
Sbjct: 477 LFKGIKSENQRQDLEKAFVLYNQLQNSNDFTP 508



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 43/214 (20%), Positives = 89/214 (41%), Gaps = 34/214 (15%)

Query: 283 ILQEAKNQGISVGIISYSSL---MGACSNAKNWQKALELYEHMKSI---KLKPTV-STMN 335
           ++QEA +       ++ S+L   +   S     Q AL+ +  ++     +  PT   T+N
Sbjct: 272 LVQEAVHNAKRTDFLASSTLKIFVKYYSRLNQTQTALQYFHQLQQTSQAQNDPTYYQTVN 331

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGL----CPNTITYSILLVACERKDDVEVGLMLLSQ 391
            ++ +L   +   +  ++ + + +L      C + +T+S ++    R   +   L +LS 
Sbjct: 332 QMLDSLLKAELFEEAEQIYNKVFTLSKDQPNCMDMMTFSCMIKGYCRAQRLPQALNVLSI 391

Query: 392 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAI 451
            KE G+ P+ V++  II  CS+  + A+                       A ++Y E +
Sbjct: 392 MKERGIKPDEVLYNSIIDGCSKNNQIAK-----------------------AFLLYDEML 428

Query: 452 VAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 485
             G  PT    + ++ C     N D   R++E +
Sbjct: 429 GEGVTPTTITFNSLIDCCVRSGNQDQAWRVLEQM 462


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 161/332 (48%), Gaps = 15/332 (4%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K VP+ T  TFN+L+   A +   E A  V   + +  +  D   YT LI +    G++D
Sbjct: 95  KFVPDHT--TFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRID 152

Query: 145 A---MFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           A   +FE++     +P+   +++++ A G +G VD A D+  +M  +   + PD +T   
Sbjct: 153 AVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQK--GLQPDAVTYNI 210

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ A    GQ++RA   +  + K         Y   ++   + GD +    ++  M  KG
Sbjct: 211 LIDAFGKTGQLERA---FDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKG 267

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           ++ +E+  + LI+  G AG+VE  +++  E  +  I   I++ ++++   S A   + A 
Sbjct: 268 LVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAF 327

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           EL++ MK   L     T N LI  L    +L     +L +M+  G  PN ITY+ L+ + 
Sbjct: 328 ELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSY 387

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            +  ++     L  + KE GV PN+V +  +I
Sbjct: 388 GKWSNLSAATRLFLEMKERGVAPNVVSYSSLI 419



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/423 (23%), Positives = 190/423 (44%), Gaps = 39/423 (9%)

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +KA++    F K    PT  T++ ++ V     D +    + + + +A    D   +  L
Sbjct: 47  EKALQTLAAFTKEGGRPTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNIL 106

Query: 134 ITTCAKSGKVDA-------MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I + AK+ +V+        MF+ NV PD   +  LI + G  G +D    +   M A+  
Sbjct: 107 IDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQ-- 164

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
              P+  T  ++M A  +AG+VD A ++++ + +  ++     Y I I+   +TG  E A
Sbjct: 165 GCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERA 224

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
              +D + K     +EV  ++L+   G  G ++   E+  + K +G+    ++Y+ L+  
Sbjct: 225 ---FDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIER 281

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
              A   +   +LY  M    +K  + T+N ++  L    ++    E+  DMK  GL  +
Sbjct: 282 LGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNAD 341

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---------GMCSRRY- 415
           T+TY+IL+    R   ++    LL + +E+G  PN++ +  +I            +R + 
Sbjct: 342 TVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFL 401

Query: 416 -EKARTLNEHVLSFNS--------GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 466
             K R +  +V+S++S        GR       T  A+ ++RE    G  P     + ++
Sbjct: 402 EMKERGVAPNVVSYSSLIEGFGKAGR-------TDAAISLFREMKAEGCPPNHVTYNLLI 454

Query: 467 GCL 469
            CL
Sbjct: 455 DCL 457



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 172/382 (45%), Gaps = 43/382 (11%)

Query: 24  DVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           +VS  +++Y  LIR     GRI   + L E M  +G               C+       
Sbjct: 130 NVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQG---------------CQ------- 167

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                     P L T++ +M    S+   + A  + + + + GL+ D   Y  LI    K
Sbjct: 168 ----------PNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGK 217

Query: 140 SGKVDAMFENVKPDR-----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +G+++  F+ V   R     V +N+L+++ G+ G +    ++  +M A+   +  + +T 
Sbjct: 218 TGQLERAFDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAK--GLVSNELTY 275

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L++    AG+V+   ++Y  +   +IK         ++C S+ G  E A  ++ DM  
Sbjct: 276 AILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKF 335

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           KG+  D V  + LI+  G AGK++AA  +L E +  G +  II+Y++L+ +     N   
Sbjct: 336 KGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSA 395

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A  L+  MK   + P V + ++LI       +    + +  +MK+ G  PN +TY++L+ 
Sbjct: 396 ATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLID 455

Query: 375 ACERKDDVEVGLMLLSQAKEDG 396
              R       +  L + ++ G
Sbjct: 456 CLIRAGRFGAAMEYLREMRDAG 477



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 172/404 (42%), Gaps = 37/404 (9%)

Query: 132 TLITTCAKSGKVDAMFENVKPDRV-----VFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
           TL+    +   V  + E+++ DR      +FN LI   G++  +++A   LA    E   
Sbjct: 3   TLLGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGR 62

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             P   T  ++++     G V     +YK + K         + I I+  ++    E AC
Sbjct: 63  --PTAYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEAC 120

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           +V+ DM K  V PD    + LI   G  G+++A  ++ +    QG    + +Y S+M A 
Sbjct: 121 NVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMHAF 180

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            +A    +A ++++ M    L+P   T N LI A     QL +  + +   +S     N 
Sbjct: 181 GSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRSF---TNE 237

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL 426
           +TY+ LL +  RK D++  + L  Q K  G++ N + +  +I                  
Sbjct: 238 VTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGW------------- 284

Query: 427 SFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL- 485
              +GR  +E+ W      +Y E +       +  ++ VL CL      +    L +++ 
Sbjct: 285 ---AGR--VEDVWQ-----LYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMK 334

Query: 486 --GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 527
             G++AD +  + L + +   G+ D  A +LL E    G  P +
Sbjct: 335 FKGLNADTVTYNILINGLGRAGKLDA-AGALLLEMEENGCAPNI 377



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 135/304 (44%), Gaps = 59/304 (19%)

Query: 16  GKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           GK  ++ ++V+     YN L+    R+G I   ++L   M+ KGL+  +++ +A      
Sbjct: 229 GKSRSFTNEVT-----YNSLLSSLGRKGDIQGLMELFGQMKAKGLVS-NELTYAILIERL 282

Query: 72  KSQKAIKEAFR-FFKLVPNPT---LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
                +++ ++ + ++V N     + T N ++   + +   E AF++ + ++  GL AD 
Sbjct: 283 GWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADT 342

Query: 128 KLYTTLITTCAKSGKVDA-------MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAE 179
             Y  LI    ++GK+DA       M EN   P+ + +N LI++ G+   +  A  +  E
Sbjct: 343 VTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLE 402

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
           M      V P+ ++  +L++    AG+ D                               
Sbjct: 403 MKE--RGVAPNVVSYSSLIEGFGKAGRTDA------------------------------ 430

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
                A S++ +M  +G  P+ V  + LID    AG+  AA E L+E ++ G  +G ++ 
Sbjct: 431 -----AISLFREMKAEGCPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAGCQMGKVTK 485

Query: 300 SSLM 303
           S L+
Sbjct: 486 SLLV 489


>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
          Length = 933

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 182/404 (45%), Gaps = 18/404 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPTL 92
           R   + E  DL E M R G+L       A    +C+  +   EA+  F    K+   P  
Sbjct: 251 RTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGR-FSEAYALFREMDKVGAAPNH 309

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-------- 144
            T+  L+   A +   +    +L  +   G+  D   YT L+    K GK D        
Sbjct: 310 VTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRF 369

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           A+ +N+ P+ V +  LI A  ++  VD A  VL EM  E   + P+ +T  +++      
Sbjct: 370 ALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEM--EEKSISPNVVTFSSVINGFVKR 427

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G +D+A E  +M+ +  I      Y   I+   +    + A  VY DM  +GV  ++  +
Sbjct: 428 GLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIV 487

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
            +L++     GK+E A  + ++A   G+S+  ++Y++L+     A +   A +  + +  
Sbjct: 488 DSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD 547

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             + P     N  I  LC   +  +    L++M+++GL P+  TY+ ++V+  RK +   
Sbjct: 548 RNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAK 607

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKAR-TLNEHV 425
            L LL + K   + PNL+ +  ++     +   EKA+  LNE V
Sbjct: 608 ALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMV 651



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 174/417 (41%), Gaps = 54/417 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G+I E + L +D    GL  +D V +    +       +  AF+F + + +   
Sbjct: 492 NGLRQNGKIEEAMALFKDASGSGL-SLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNM 550

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
            P    +N+ ++ +C   K  E A   L  ++  GLK D   Y T+I +  + G+     
Sbjct: 551 LPDAVVYNVFINCLCMLGKFKE-AKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKAL 609

Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
               +    ++KP+ + +N L+     +GAV++A  +L EM +      P  +T   +++
Sbjct: 610 KLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSA--GFSPSSLTHRRVLQ 667

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           AC+ + ++D   ++++ +    +     VY   +      G    A  V ++M   G+ P
Sbjct: 668 ACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAP 727

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---------- 309
           D +  +ALI     +  ++ AF    +  +Q IS  I ++++L+G   +           
Sbjct: 728 DTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVL 787

Query: 310 -------------------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
                                     N  +A+ LY  M      P VST NALI+     
Sbjct: 788 IEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKA 847

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVIPN 400
             + +  E+  DM+  G+ P + TY IL+    R ++  EV    L   KE G  P+
Sbjct: 848 GMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVK-KCLKDMKEKGFSPS 903



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/461 (21%), Positives = 178/461 (38%), Gaps = 89/461 (19%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRFF---KL 86
           + L + GR  E + LL +M  +G++ MD V +    +    Q     +K+  RF     L
Sbjct: 317 DSLAKAGRGKELLSLLGEMVSRGVV-MDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNL 375

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVL------------------------------- 115
            PN    T+ +L+     + + + A QVL                               
Sbjct: 376 SPNGV--TYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKA 433

Query: 116 ----RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITA 163
               R+++E G+  +   Y TLI    K    DA  E         VK ++ + ++L+  
Sbjct: 434 TEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNG 493

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
             Q+G ++ A  +  +  A    +  DH+    L+     AG +  A +  + +   N+ 
Sbjct: 494 LRQNGKIEEAMALFKD--ASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNML 551

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
               VY + INC    G ++ A S   +M   G+ PD+   + +I      G+   A ++
Sbjct: 552 PDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKL 611

Query: 284 LQEAKNQGISVGIISYSSLMG-----------------------------------ACSN 308
           L E K   I   +I+Y++L+                                    ACS 
Sbjct: 612 LHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQ 671

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           ++     L+++E M +  L   ++  N L+  LC      K   VL +M   G+ P+TIT
Sbjct: 672 SRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTIT 731

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           ++ L++   +   ++      +Q     + PN+  F  ++G
Sbjct: 732 FNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 198/461 (42%), Gaps = 34/461 (7%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           PT   +N+L+   A+  D   A  VL  + + G+  D     TL+    ++G+VDA    
Sbjct: 101 PTTVAYNILL---AALSDHAHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAAL 157

Query: 150 VKPDRVVFNALITACGQS-------GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                 +   + +A   S       G    A  V   M A+  P+D   +    L+    
Sbjct: 158 ADRAGGITPWMSSAGTLSLLDIAGFGDTPAALSVADRMTAQGLPMDV--VGYNTLVAGFC 215

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AGQVD AR V  M+ +  +      YT  I    +T   E A  +Y+ M + GV+ D V
Sbjct: 216 RAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVV 275

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
            LSAL+      G+   A+ + +E    G +   ++Y +L+ + + A   ++ L L   M
Sbjct: 276 TLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEM 335

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            S  +   + T  AL+  L    +  +  + L    S  L PN +TY++L+ A  +  +V
Sbjct: 336 VSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNV 395

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR----------RYEKARTLNEHVLSFNS- 430
           +    +L + +E  + PN+V F  +I G   R          R  K R +N +V+++ + 
Sbjct: 396 DEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTL 455

Query: 431 --GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE--RLVENLG 486
             G  + + +    AL VY + +  G      +V  ++  L+   N  I E   L ++  
Sbjct: 456 IDGFFKFQGQ--DAALEVYHDMLCEGVKVNKFIVDSLVNGLR--QNGKIEEAMALFKDAS 511

Query: 487 VSADALKRSNLCSLIDG-FGEYD-PRAFSLLEEAASFGIVP 525
            S  +L   N  +LIDG F   D P AF   +E     ++P
Sbjct: 512 GSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLP 552



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/376 (20%), Positives = 155/376 (41%), Gaps = 15/376 (3%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMS 100
           +++  DM  +G+  ++K       N  +    I+EA   FK      LS     +  L+ 
Sbjct: 469 LEVYHDMLCEGV-KVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLID 527

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC--------AKSGKVDAMFENVKP 152
               + D   AF+  + + +  +  D  +Y   I           AKS   +     +KP
Sbjct: 528 GLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKP 587

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D+  +N +I +  + G   +A  +L EM  ++  + P+ IT   L+      G V++A+ 
Sbjct: 588 DQSTYNTMIVSHCRKGETAKALKLLHEM--KMSSIKPNLITYNTLVAGLFGTGAVEKAKY 645

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           +   +       +   +   +  CSQ+   +    +++ M   G+  D    + L+    
Sbjct: 646 LLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLC 705

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
           + G    A  +L+E    GI+   I++++L+     + +   A   Y  M    + P ++
Sbjct: 706 YHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIA 765

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N L+  L    ++ +   VL +M+  GL PN +TY IL     ++ +    + L  + 
Sbjct: 766 TFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEM 825

Query: 393 KEDGVIPNLVMFKCII 408
              G +P +  +  +I
Sbjct: 826 VGKGFVPKVSTYNALI 841


>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
 gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 124/507 (24%), Positives = 215/507 (42%), Gaps = 48/507 (9%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPTL 92
           R   + E  DL E M R G+L       A    +C+  +   EA+  F    K+   P  
Sbjct: 251 RTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGR-FSEAYALFREMDKVGAAPNH 309

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-------- 144
            T+  L+   A +   +    +L  +   G+  D   YT L+    K GK D        
Sbjct: 310 VTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRF 369

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           A+ +N+ P+ V +  LI A  ++  VD A  VL EM  E   + P+ +T  +++      
Sbjct: 370 ALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEM--EEKSISPNVVTFSSVINGFVKR 427

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G +D+A E  +M+ +  I      Y   I+   +    + A  VY DM  +GV  ++  +
Sbjct: 428 GLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIV 487

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
            +L++     GK+E A  + ++A   G+S+  ++Y++L+     A +   A +  + +  
Sbjct: 488 DSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD 547

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             + P     N  I  LC   +  +    L++M+++GL P+  TY+ ++V+  RK +   
Sbjct: 548 RNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAK 607

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            L LL + K   + PNL+ +  ++     +   EKA+ L                     
Sbjct: 608 ALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYL--------------------- 646

Query: 443 ALMVYREAIVAGTIPTVEVVSKVL-GCLQ---LPYNADIRERLVENLGVSADALKRSNLC 498
                 E + AG  P+     +VL  C Q   L    DI E ++ N G+ AD    + L 
Sbjct: 647 ----LNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMM-NAGLHADITVYNTLL 701

Query: 499 SLIDGFGEYDPRAFSLLEEAASFGIVP 525
            ++   G    +A  +LEE    GI P
Sbjct: 702 QVLCYHG-MTRKATVVLEEMLGSGIAP 727



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 119/461 (25%), Positives = 200/461 (43%), Gaps = 34/461 (7%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           PT   +N+L+   A+  D   A  VL  + + G+  D     TL+    ++G+VDA    
Sbjct: 101 PTTVAYNILL---AALSDHAHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAAL 157

Query: 150 VKP-------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                     D + +N LI    + G    A  V   M A+  P+D   +    L+    
Sbjct: 158 ADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDV--VGYNTLVAGFC 215

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AGQVD AR V  M+ +  +      YT  I    +T   E A  +Y+ M + GV+ D V
Sbjct: 216 RAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVV 275

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
            LSAL+      G+   A+ + +E    G +   ++Y +L+ + + A   ++ L L   M
Sbjct: 276 TLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEM 335

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            S  +   + T  AL+  L    +  +  + L    S  L PN +TY++L+ A  +  +V
Sbjct: 336 VSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNV 395

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR----------RYEKARTLNEHVLSFNS- 430
           +    +L + +E  + PN+V F  +I G   R          R  K R +N +V+++ + 
Sbjct: 396 DEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTL 455

Query: 431 --GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE--RLVENLG 486
             G  + + +    AL VY + +  G      +V  ++  L+   N  I E   L ++  
Sbjct: 456 IDGFFKFQGQ--DAALEVYHDMLCEGVKVNKFIVDSLVNGLR--QNGKIEEAMALFKDAS 511

Query: 487 VSADALKRSNLCSLIDG-FGEYD-PRAFSLLEEAASFGIVP 525
            S  +L   N  +LIDG F   D P AF   +E     ++P
Sbjct: 512 GSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLP 552



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 163/389 (41%), Gaps = 52/389 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G+I E + L +D    GL  +D V +    +       +  AF+F + + +   
Sbjct: 492 NGLRQNGKIEEAMALFKDASGSGL-SLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNM 550

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
            P    +N+ ++ +C   K  E A   L  ++  GLK D   Y T+I +  + G+     
Sbjct: 551 LPDAVVYNVFINCLCMLGKFKE-AKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKAL 609

Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
               +    ++KP+ + +N L+     +GAV++A  +L EM +      P  +T   +++
Sbjct: 610 KLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSA--GFSPSSLTHRRVLQ 667

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           AC+ + ++D   ++++ +    +     VY   +      G    A  V ++M   G+ P
Sbjct: 668 ACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAP 727

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---------- 309
           D +  +ALI     +  ++ AF    +  +Q IS  I ++++L+G   +           
Sbjct: 728 DTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVL 787

Query: 310 -------------------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
                                     N  +A+ LY  M      P VST NALI+     
Sbjct: 788 IEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKA 847

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             + +  E+  DM+  G+ P + TY IL+
Sbjct: 848 GMMTQAKELFKDMQKRGVHPTSCTYDILV 876



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/461 (21%), Positives = 178/461 (38%), Gaps = 89/461 (19%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRFF---KL 86
           + L + GR  E + LL +M  +G++ MD V +    +    Q     +K+  RF     L
Sbjct: 317 DSLAKAGRGKELLSLLGEMVSRGVV-MDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNL 375

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVL------------------------------- 115
            PN    T+ +L+     + + + A QVL                               
Sbjct: 376 SPNGV--TYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKA 433

Query: 116 ----RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITA 163
               R+++E G+  +   Y TLI    K    DA  E         VK ++ + ++L+  
Sbjct: 434 TEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNG 493

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
             Q+G ++ A  +  +  A    +  DH+    L+     AG +  A +  + +   N+ 
Sbjct: 494 LRQNGKIEEAMALFKD--ASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNML 551

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
               VY + INC    G ++ A S   +M   G+ PD+   + +I      G+   A ++
Sbjct: 552 PDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKL 611

Query: 284 LQEAKNQGISVGIISYSSLMG-----------------------------------ACSN 308
           L E K   I   +I+Y++L+                                    ACS 
Sbjct: 612 LHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQ 671

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           ++     L+++E M +  L   ++  N L+  LC      K   VL +M   G+ P+TIT
Sbjct: 672 SRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTIT 731

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           ++ L++   +   ++      +Q     + PN+  F  ++G
Sbjct: 732 FNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/376 (20%), Positives = 155/376 (41%), Gaps = 15/376 (3%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMS 100
           +++  DM  +G+  ++K       N  +    I+EA   FK      LS     +  L+ 
Sbjct: 469 LEVYHDMLCEGV-KVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLID 527

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC--------AKSGKVDAMFENVKP 152
               + D   AF+  + + +  +  D  +Y   I           AKS   +     +KP
Sbjct: 528 GLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKP 587

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D+  +N +I +  + G   +A  +L EM  ++  + P+ IT   L+      G V++A+ 
Sbjct: 588 DQSTYNTMIVSHCRKGETAKALKLLHEM--KMSSIKPNLITYNTLVAGLFGTGAVEKAKY 645

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           +   +       +   +   +  CSQ+   +    +++ M   G+  D    + L+    
Sbjct: 646 LLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLC 705

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
           + G    A  +L+E    GI+   I++++L+     + +   A   Y  M    + P ++
Sbjct: 706 YHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIA 765

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N L+  L    ++ +   VL +M+  GL PN +TY IL     ++ +    + L  + 
Sbjct: 766 TFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEM 825

Query: 393 KEDGVIPNLVMFKCII 408
              G +P +  +  +I
Sbjct: 826 VGKGFVPKVSTYNALI 841


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 111/441 (25%), Positives = 202/441 (45%), Gaps = 34/441 (7%)

Query: 16  GKHANYAHDVSEQLHSYNRLI--RQGRISECID-LLEDMERKGLLDMDKVYHARFFNV-- 70
           G H + A  + + LH     +  R+  +   +D LL  +  +GLLD   +  AR   +  
Sbjct: 100 GHHPHLAASLVDLLHRAALALGPRRSALPSVVDTLLSLLADRGLLDDAVLALARVRELRV 159

Query: 71  ------------CKSQKAIKE-AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
                       C +++   E A+R F+ +P P + TFN+++       D   A  +L  
Sbjct: 160 PPNTRTCNHILLCLARERSSELAWRLFEQLPAPNVFTFNIMIDFLCKEGDLAEARALLAR 219

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFENV--------KPDRVVFNALITACGQSGA 169
           ++  G   D   Y +LI    K G+++ + + V        +PD V +NAL+    + G 
Sbjct: 220 MKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGR 279

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           ++RA+   AEM  E   V  + +T    + A    G V  A +++  +    +K     Y
Sbjct: 280 MERAYSYFAEMKRE--GVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTY 337

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           T  ++   + G  + A  + ++M ++GV  + V  + L+D     GKV  A ++ +  + 
Sbjct: 338 TCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMER 397

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            GI    + Y++L+      KN ++AL L   MK   ++  VS   ALI  LC+  +L +
Sbjct: 398 AGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDE 457

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
              +L+ M   GL PN + Y+ ++ AC +       + LL +  + G  PN+V +  ++ 
Sbjct: 458 AKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVD 517

Query: 409 GMCSRRYEKARTLNEHVLSFN 429
           G+C     KA +++E +  FN
Sbjct: 518 GLC-----KAGSIDEAISHFN 533



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 146/316 (46%), Gaps = 10/316 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM-- 146
           P + T+N L++        E A+     ++  G+ A+   ++T +    K+G V +AM  
Sbjct: 262 PDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKL 321

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 + +KP+ V +  L+    ++G +D A  +  EM  +  P++   +T   L+   
Sbjct: 322 FAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNV--VTYTVLVDGL 379

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+V  A +V++++ +  I+    +YT  I+      + E A S+  +M  KG+  D 
Sbjct: 380 CKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDV 439

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
               ALI    +  K++ A  +L +    G+    + Y+++M AC  A+   +A+ L + 
Sbjct: 440 SLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQK 499

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M     +P + T  AL+  LC    + + +   + M  LGL PN   Y+ L+    +   
Sbjct: 500 MMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGR 559

Query: 382 VEVGLMLLSQAKEDGV 397
           ++  ++LL +  + G+
Sbjct: 560 LDKAVLLLDEMIDKGM 575



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 162/365 (44%), Gaps = 17/365 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-----KLVPNPT 91
           + G + E + L   M  KG+   +  Y       CK+ + + +A         + VP   
Sbjct: 311 KNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGR-LDDALVLTNEMVQQGVPLNV 369

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDAMFE 148
           ++   ++  +C   K +E A  V RL++ AG++A+  LYTTLI        S +  ++  
Sbjct: 370 VTYTVLVDGLCKEGKVAE-AEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLS 428

Query: 149 NVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            +K      D  ++ ALI        +D A  +L +M+     + P+++    +M AC  
Sbjct: 429 EMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDE--CGLKPNNVIYTNIMDACFK 486

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           A +   A  + + +     +     Y   ++   + G  + A S ++ M   G+ P+   
Sbjct: 487 ARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQA 546

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +AL+D     G+++ A  +L E  ++G+S+  +  +SLM       N Q A  L   M 
Sbjct: 547 YTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMI 606

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           +  L+  +      +   C+ + + +  EVLS+M   G+ P+ + Y+ L+  C++  ++E
Sbjct: 607 NSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNME 666

Query: 384 VGLML 388
              +L
Sbjct: 667 EAAIL 671



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 147/341 (43%), Gaps = 15/341 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN 96
           + GR+ + + L  +M ++G+      Y      +CK  K + EA   F+L+    +    
Sbjct: 346 KAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGK-VAEAEDVFRLMERAGIRANE 404

Query: 97  MLMSVCASS----KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-------A 145
           +L +         K+SE A  +L  +++ G++ D  LY  LI       K+D        
Sbjct: 405 LLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNK 464

Query: 146 MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           M E  +KP+ V++  ++ AC ++     A  +L +M        P+ +T  AL+     A
Sbjct: 465 MDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDS--GFRPNIVTYCALVDGLCKA 522

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G +D A   +  +    ++   + YT  ++   + G  + A  + D+M  KG+  D V  
Sbjct: 523 GSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVC 582

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++L+D     G ++ AF +  +  N G+ + +  Y+  +    N    Q+A E+   M  
Sbjct: 583 TSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIE 642

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
             + P     N LI        + +   + ++M+SL  C N
Sbjct: 643 NGITPDAVVYNCLINKCQKLGNMEEAAILQNEMESLLSCTN 683


>gi|298710575|emb|CBJ32006.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 706

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 103/439 (23%), Positives = 186/439 (42%), Gaps = 36/439 (8%)

Query: 15  NGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNV 70
           NG+    +  + EQ  +YN ++    R G+  E + LL++ME +G+   D V +A     
Sbjct: 45  NGEEYLSSWLIVEQ-KAYNTILAALSRAGKWEEAVLLLKEMETRGI-QRDAVSYACLIAA 102

Query: 71  C----KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKA 125
           C    + ++A+        +        ++  +  CA  +  + A  +LR ++   GL A
Sbjct: 103 CGRGMQWERALISLAEMRDVGIKANSFVYSAAIDACAKGRQWQKALILLRDMEVVDGLPA 162

Query: 126 DCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVL 177
           +   Y      C K+G+               VKP+ V + ++I+AC + G   RA  +L
Sbjct: 163 NLICYNAAADACGKAGRPGEALALLAKMQKVGVKPNEVSYLSVISACSRVGDWKRALLLL 222

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            EM   V  V PD     + + AC   G+  +A  +  ++HK         Y  AI+ C 
Sbjct: 223 DEMI--VMGVQPDLKCYCSAITACGKGGRWKQALGLLNIMHKDGPPPNDYCYNAAISACG 280

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL------------- 284
           ++G W  A  +   M  +GV PD +  ++ ID  G  G+ E   +I              
Sbjct: 281 KSGQWREAKELLSTMRDRGVPPDLISYNSAIDACGKGGRWEEGLKIFVGMVKASEVPWDA 340

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
                +  +    +Y + + ACS  K WQ AL   E M+   ++ T     A +      
Sbjct: 341 DMGHPKPPTPDATTYGAAITACSRGKQWQMALRFLEDMEKKGVERTEGVFQATLAGCARM 400

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            +  + +  L  M+  GL P    Y+ ++ AC R  + +  + +L Q    G  P+++  
Sbjct: 401 GRWRECIVTLDQMRKSGLQPRAAAYNSVITACGRGGEWQRAIAILKQMSSRGATPDVITL 460

Query: 405 KCIIGMC--SRRYEKARTL 421
             ++  C  S+R+++AR +
Sbjct: 461 NAVMTSCAQSQRWKQARVI 479



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/310 (22%), Positives = 133/310 (42%), Gaps = 24/310 (7%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK----LVPNPTL 92
           + GR  E + LL  M++ G+   ++V +    + C      K A         +   P L
Sbjct: 176 KAGRPGEALALLAKMQKVGV-KPNEVSYLSVISACSRVGDWKRALLLLDEMIVMGVQPDL 234

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---- 148
             +   ++ C      + A  +L ++ + G   +   Y   I+ C KSG+     E    
Sbjct: 235 KCYCSAITACGKGGRWKQALGLLNIMHKDGPPPNDYCYNAAISACGKSGQWREAKELLST 294

Query: 149 ----NVKPDRVVFNALITACGQSGAVDRAFDVLAEM--NAEV---------HPVDPDHIT 193
                V PD + +N+ I ACG+ G  +    +   M   +EV          P  PD  T
Sbjct: 295 MRDRGVPPDLISYNSAIDACGKGGRWEEGLKIFVGMVKASEVPWDADMGHPKPPTPDATT 354

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
            GA + AC+   Q   A    + + K  ++ T  V+   +  C++ G W       D M 
Sbjct: 355 YGAAITACSRGKQWQMALRFLEDMEKKGVERTEGVFQATLAGCARMGRWRECIVTLDQMR 414

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           K G+ P     +++I   G  G+ + A  IL++  ++G +  +I+ +++M +C+ ++ W+
Sbjct: 415 KSGLQPRAAAYNSVITACGRGGEWQRAIAILKQMSSRGATPDVITLNAVMTSCAQSQRWK 474

Query: 314 KALELYEHMK 323
           +A  + + M+
Sbjct: 475 QARVILDFMR 484



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 74/147 (50%), Gaps = 1/147 (0%)

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ++ A +A KV AA    +E  +  + V   +Y++++ A S A  W++A+ L + M++  +
Sbjct: 30  VEQALNARKVSAAQANGEEYLSSWLIVEQKAYNTILAALSRAGKWEEAVLLLKEMETRGI 89

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           +    +   LI A   G Q  + +  L++M+ +G+  N+  YS  + AC +    +  L+
Sbjct: 90  QRDAVSYACLIAACGRGMQWERALISLAEMRDVGIKANSFVYSAAIDACAKGRQWQKALI 149

Query: 388 LLSQAK-EDGVIPNLVMFKCIIGMCSR 413
           LL   +  DG+  NL+ +      C +
Sbjct: 150 LLRDMEVVDGLPANLICYNAAADACGK 176


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 192/422 (45%), Gaps = 23/422 (5%)

Query: 18  HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H   +H ++ + + Y+  I    ++G + +   L + M   GL+   + Y +     C+ 
Sbjct: 336 HEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR- 394

Query: 74  QKAIKEAFRFF------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           +K +++ +          +V +P   T+  ++    SS D +GA+ +++ +  +G + + 
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISPY--TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 128 KLYTTLITTCAKSGKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
            +YTTLI T  ++ +  DAM        + + PD   +N+LI    ++  +D A   L E
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVE 512

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
           M    + + P+  T GA +     A +   A +  K + +  +     + T  IN   + 
Sbjct: 513 MVE--NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK 570

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G    ACS Y  M  +G++ D    + L++      KV+ A EI +E + +GI+  + SY
Sbjct: 571 GKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSY 630

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
             L+   S   N QKA  +++ M    L P V   N L+   C   ++ K  E+L +M  
Sbjct: 631 GVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
            GL PN +TY  ++    +  D+     L  + K  G++P+  ++  ++  C R  +  R
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVER 750

Query: 420 TL 421
            +
Sbjct: 751 AI 752



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 155/339 (45%), Gaps = 24/339 (7%)

Query: 71  CKSQKAIKEAFRFFKLVPNPTLS---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           CK  K I+    +  +V    L    T+ +LM+    +   + A ++ R ++  G+  D 
Sbjct: 568 CKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDV 627

Query: 128 KLYTTLITTCAKSG---KVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
             Y  LI   +K G   K  ++F     E + P+ +++N L+    +SG +++A ++L E
Sbjct: 628 FSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDE 687

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE--VYTIAINCC 236
           M+  V  + P+ +T   ++     +G +    E +++  +  +KG  P+  VYT  ++ C
Sbjct: 688 MS--VKGLHPNAVTYCTIIDGYCKSGDL---AEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-- 294
            +  D E A +++    KKG        +ALI++    GK E   E+L    +       
Sbjct: 743 CRLNDVERAITIFG-TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG 801

Query: 295 --GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
               ++Y+ ++       N + A EL+  M++  L PTV T  +L+       +  +   
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
           V  +  + G+ P+ I YS+++ A  ++      L+L+ Q
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQ 900



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/390 (19%), Positives = 176/390 (45%), Gaps = 20/390 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
            ++  R  + + +L++M+ +G+      Y++    + K+++ + EA  F  ++V N   P
Sbjct: 462 FLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKR-MDEARSFLVEMVENGLKP 520

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
              T+   +S    + +   A + ++ ++E G+  +  L T LI    K GKV       
Sbjct: 521 NAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAY 580

Query: 144 -DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
              + + +  D   +  L+    ++  VD A ++  EM  +   + PD  + G L+   +
Sbjct: 581 RSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK--GIAPDVFSYGVLINGFS 638

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G + +A  ++  + +  +     +Y + +    ++G+ E A  + D+M+ KG+ P+ V
Sbjct: 639 KLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAV 698

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
               +ID    +G +  AF +  E K +G+      Y++L+  C    + ++A+ ++   
Sbjct: 699 TYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN 758

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL----CPNTITYSILLVACER 378
           K      + +  NALI  +    +     EVL+ +          PN +TY+I++    +
Sbjct: 759 KK-GCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + ++E    L  Q +   ++P ++ +  ++
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLL 847



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/483 (20%), Positives = 181/483 (37%), Gaps = 74/483 (15%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P   T+++L+      K  E A  +L  +   G+  D   Y+ LI    K    DA    
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334

Query: 146 MFE------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           + E      N+KP   +++  I    + G +++A  +   M A    + P      +L++
Sbjct: 335 VHEMVSHGINIKP--YMYDCCICVMSKEGVMEKAKALFDGMIA--SGLIPQAQAYASLIE 390

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                  V +  E+   + K NI  +P  Y   +     +GD + A ++  +M   G  P
Sbjct: 391 GYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRP 450

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V  + LI       +   A  +L+E K QGI+  I  Y+SL+   S AK   +A    
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------------ 367
             M    LKP   T  A I+   +  +     + + +M+  G+ PN +            
Sbjct: 511 VEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK 570

Query: 368 -----------------------TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
                                  TY++L+    + D V+    +  + +  G+ P++  +
Sbjct: 571 GKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSY 630

Query: 405 KCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 464
             +I                     +G  ++ N     A  ++ E +  G  P V + + 
Sbjct: 631 GVLI---------------------NGFSKLGN--MQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 465 VLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFG 522
           +LG        +  + L++ + V          C++IDG+ +      AF L +E    G
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727

Query: 523 IVP 525
           +VP
Sbjct: 728 LVP 730



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 16/182 (8%)

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           VY  M ++ V+ D      LI     AG V+   ++L + + +  +  +           
Sbjct: 208 VYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATL----------- 256

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
              N   AL+L E M    L P   T + LI  LC   +L     +L +M SLG+  +  
Sbjct: 257 ---NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNH 313

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHV 425
           TYS+L+    +  + +    L+ +    G+     M+ C I + S+    EKA+ L + +
Sbjct: 314 TYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGM 373

Query: 426 LS 427
           ++
Sbjct: 374 IA 375


>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 933

 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 182/404 (45%), Gaps = 18/404 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPTL 92
           R   + E  DL E M R G+L       A    +C+  +   EA+  F    K+   P  
Sbjct: 251 RTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGR-FSEAYALFREMDKVGAAPNH 309

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-------- 144
            T+  L+   A +   +    +L  +   G+  D   YT L+    K GK D        
Sbjct: 310 VTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRF 369

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           A+ +N+ P+ V +  LI A  ++  VD A  VL EM  E   + P+ +T  +++      
Sbjct: 370 ALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEM--EEKSISPNVVTFSSVINGFVKR 427

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G +D+A E  +M+ +  I      Y   I+   +    + A  VY DM  +GV  ++  +
Sbjct: 428 GLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIV 487

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
            +L++     GK+E A  + ++A   G+S+  ++Y++L+     A +   A +  + +  
Sbjct: 488 DSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMD 547

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             + P     N  I  LC   +  +    L++M+++GL P+  TY+ ++V+  RK +   
Sbjct: 548 RNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAK 607

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKAR-TLNEHV 425
            L LL + K   + PNL+ +  ++     +   EKA+  LNE V
Sbjct: 608 ALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMV 651



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 119/461 (25%), Positives = 200/461 (43%), Gaps = 34/461 (7%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           PT   +N+L+   A+  D   A  VL  + + G+  D     TL+    ++G+VDA    
Sbjct: 101 PTTVAYNILL---AALSDHAHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAAL 157

Query: 150 VKP-------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                     D + +N LI    + G    A  V   M A+  P+D   +    L+    
Sbjct: 158 ADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDV--VGYNTLVAGFC 215

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AGQVD AR V  M+ +  +      YT  I    +T   E A  +Y+ M + GV+ D V
Sbjct: 216 RAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVV 275

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
            LSAL+      G+   A+ + +E    G +   ++Y +L+ + + A   ++ L L   M
Sbjct: 276 TLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEM 335

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            S  +   + T  AL+  L    +  +  + L    S  L PN +TY++L+ A  +  +V
Sbjct: 336 VSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNV 395

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR----------RYEKARTLNEHVLSFNS- 430
           +    +L + +E  + PN+V F  +I G   R          R  K R +N +V+++ + 
Sbjct: 396 DEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTL 455

Query: 431 --GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE--RLVENLG 486
             G  + + +    AL VY + +  G      +V  ++  L+   N  I E   L ++  
Sbjct: 456 IDGFFKFQGQ--DAALEVYHDMLCEGVKVNKFIVDSLVNGLR--QNGKIEEAMALFKDAS 511

Query: 487 VSADALKRSNLCSLIDG-FGEYD-PRAFSLLEEAASFGIVP 525
            S  +L   N  +LIDG F   D P AF   +E     ++P
Sbjct: 512 GSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLP 552



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 174/417 (41%), Gaps = 54/417 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G+I E + L +D    GL  +D V +    +       +  AF+F + + +   
Sbjct: 492 NGLRQNGKIEEAMALFKDASGSGL-SLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNM 550

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
            P    +N+ ++ +C   K  E A   L  ++  GLK D   Y T+I +  + G+     
Sbjct: 551 LPDAVVYNVFINCLCMLGKFKE-AKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKAL 609

Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
               +    ++KP+ + +N L+     +GAV++A  +L EM +      P  +T   +++
Sbjct: 610 KLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSA--GFSPSSLTHRRVLQ 667

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           AC+ + ++D   ++++ +    +     VY   +      G    A  V ++M   G+ P
Sbjct: 668 ACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAP 727

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---------- 309
           D +  +ALI     +  ++ AF    +  +Q IS  I ++++L+G   +           
Sbjct: 728 DTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVL 787

Query: 310 -------------------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
                                     N  +A+ LY  M      P VST NALI+     
Sbjct: 788 IEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKA 847

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVIPN 400
             + +  E+  DM+  G+ P + TY IL+    R ++  EV    L   KE G  P+
Sbjct: 848 GMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVK-KCLKDMKEKGFSPS 903



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 97/461 (21%), Positives = 178/461 (38%), Gaps = 89/461 (19%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRFF---KL 86
           + L + GR  E + LL +M  +G++ MD V +    +    Q     +K+  RF     L
Sbjct: 317 DSLAKAGRGKELLSLLGEMVSRGVV-MDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNL 375

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVL------------------------------- 115
            PN    T+ +L+     + + + A QVL                               
Sbjct: 376 SPNGV--TYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKA 433

Query: 116 ----RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITA 163
               R+++E G+  +   Y TLI    K    DA  E         VK ++ + ++L+  
Sbjct: 434 TEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNG 493

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
             Q+G ++ A  +  +  A    +  DH+    L+     AG +  A +  + +   N+ 
Sbjct: 494 LRQNGKIEEAMALFKD--ASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNML 551

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
               VY + INC    G ++ A S   +M   G+ PD+   + +I      G+   A ++
Sbjct: 552 PDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKL 611

Query: 284 LQEAKNQGISVGIISYSSLMG-----------------------------------ACSN 308
           L E K   I   +I+Y++L+                                    ACS 
Sbjct: 612 LHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQ 671

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           ++     L+++E M +  L   ++  N L+  LC      K   VL +M   G+ P+TIT
Sbjct: 672 SRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTIT 731

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           ++ L++   +   ++      +Q     + PN+  F  ++G
Sbjct: 732 FNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/376 (20%), Positives = 155/376 (41%), Gaps = 15/376 (3%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMS 100
           +++  DM  +G+  ++K       N  +    I+EA   FK      LS     +  L+ 
Sbjct: 469 LEVYHDMLCEGV-KVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLID 527

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC--------AKSGKVDAMFENVKP 152
               + D   AF+  + + +  +  D  +Y   I           AKS   +     +KP
Sbjct: 528 GLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKP 587

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D+  +N +I +  + G   +A  +L EM  ++  + P+ IT   L+      G V++A+ 
Sbjct: 588 DQSTYNTMIVSHCRKGETAKALKLLHEM--KMSSIKPNLITYNTLVAGLFGTGAVEKAKY 645

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           +   +       +   +   +  CSQ+   +    +++ M   G+  D    + L+    
Sbjct: 646 LLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLC 705

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
           + G    A  +L+E    GI+   I++++L+     + +   A   Y  M    + P ++
Sbjct: 706 YHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIA 765

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N L+  L    ++ +   VL +M+  GL PN +TY IL     ++ +    + L  + 
Sbjct: 766 TFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEM 825

Query: 393 KEDGVIPNLVMFKCII 408
              G +P +  +  +I
Sbjct: 826 VGKGFVPKVSTYNALI 841


>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
 gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
          Length = 668

 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 157/343 (45%), Gaps = 11/343 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DA 145
            P    F+ L+S  A +   + A ++L   Q  GL       T LI+    +G+V   +A
Sbjct: 225 EPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEA 284

Query: 146 MF------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +F        +KP    +NAL+    + G++  A  VL EM+     V PD  T   L+ 
Sbjct: 285 LFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQ--CGVAPDEATYSLLVD 342

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A   AG+ + AR + K +    +K +  V++  +      GDW+ A +V  +M   GV P
Sbjct: 343 AYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRP 402

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D  F + +ID  G    +  A +   + + +GI   ++++++L+ A        +A EL+
Sbjct: 403 DRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELF 462

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E M+     P  +T N +I  L + +       +LS+MK  GL PN ITY+ L+    R 
Sbjct: 463 EEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRS 522

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
              +  +  +   K DG+ P+  M+  ++   ++R      LN
Sbjct: 523 GRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALN 565



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 146/306 (47%), Gaps = 13/306 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P  +T+++L+     +   E A  +L+ ++  G+K    +++ ++      G     F  
Sbjct: 332 PDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAV 391

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V+PDR  +N +I   G+   +  A D   +M  E   ++PD +T   L+ A 
Sbjct: 392 LREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREE--GIEPDVVTWNTLIDAH 449

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+ DRA E+++ + + N       Y I IN   +   WE   ++  +M ++G++P+ 
Sbjct: 450 CKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNI 509

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + L+D  G +G+ + A + ++  K  G+      Y +L+ A +       AL + + 
Sbjct: 510 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 569

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACER 378
           MK+  L+ ++  +N+LI A  +  ++ +   VL  M+  GL P+ ITY+ L   L+  E+
Sbjct: 570 MKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQ 629

Query: 379 KDDVEV 384
            D V V
Sbjct: 630 FDKVPV 635



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           D+ +  + PD    S LI     A   +AA E+L  A+  G++    + ++L+ A   A 
Sbjct: 218 DLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAG 277

Query: 311 NWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
              +A  L+ E   + ++KP     NAL+        L    +VL +M   G+ P+  TY
Sbjct: 278 RVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATY 337

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           S+L+ A  R    E   +LL + + DGV P+  +F  I+ 
Sbjct: 338 SLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILA 377



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 12/131 (9%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS--- 93
           R GR  E ID +E M+  GL     +YHA   N    +     A    K +    L    
Sbjct: 521 RSGRYKEAIDCIEAMKADGLKPSPTMYHA-LVNAYAQRGLADHALNVVKAMKADGLEVSI 579

Query: 94  -TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP 152
              N L++     +    AF VL+ ++E GL+ D   YTTL+    +  + D +      
Sbjct: 580 LVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKV------ 633

Query: 153 DRVVFNALITA 163
             V++  +IT+
Sbjct: 634 -PVIYEEMITS 643


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 192/422 (45%), Gaps = 23/422 (5%)

Query: 18  HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H   +H ++ + + Y+  I    ++G + +   L + M   GL+   + Y +     C+ 
Sbjct: 336 HEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR- 394

Query: 74  QKAIKEAFRFF------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           +K +++ +          +V +P   T+  ++    SS D +GA+ +++ +  +G + + 
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISPY--TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 128 KLYTTLITTCAKSGKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
            +YTTLI T  ++ +  DAM        + + PD   +N+LI    ++  +D A   L E
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVE 512

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
           M    + + P+  T GA +     A +   A +  K + +  +     + T  IN   + 
Sbjct: 513 MVE--NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK 570

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G    ACS Y  M  +G++ D    + L++      KV+ A EI +E + +GI+  + SY
Sbjct: 571 GKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSY 630

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
             L+   S   N QKA  +++ M    L P V   N L+   C   ++ K  E+L +M  
Sbjct: 631 GVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
            GL PN +TY  ++    +  D+     L  + K  G++P+  ++  ++  C R  +  R
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVER 750

Query: 420 TL 421
            +
Sbjct: 751 AI 752



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 155/339 (45%), Gaps = 24/339 (7%)

Query: 71  CKSQKAIKEAFRFFKLVPNPTLS---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           CK  K I+    +  +V    L    T+ +LM+    +   + A ++ R ++  G+  D 
Sbjct: 568 CKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDV 627

Query: 128 KLYTTLITTCAKSG---KVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
             Y  LI   +K G   K  ++F     E + P+ +++N L+    +SG +++A ++L E
Sbjct: 628 FSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDE 687

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE--VYTIAINCC 236
           M+  V  + P+ +T   ++     +G +    E +++  +  +KG  P+  VYT  ++ C
Sbjct: 688 MS--VKGLHPNAVTYCTIIDGYCKSGDL---AEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-- 294
            +  D E A +++    KKG        +ALI++    GK E   E+L    +       
Sbjct: 743 CRLNDVERAITIFG-TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG 801

Query: 295 --GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
               ++Y+ ++       N + A EL+  M++  L PTV T  +L+       +  +   
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
           V  +  + G+ P+ I YS+++ A  ++      L+L+ Q
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQ 900



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/390 (19%), Positives = 176/390 (45%), Gaps = 20/390 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
            ++  R  + + +L++M+ +G+      Y++    + K+++ + EA  F  ++V N   P
Sbjct: 462 FLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKR-MDEARSFLVEMVENGLKP 520

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
              T+   +S    + +   A + ++ ++E G+  +  L T LI    K GKV       
Sbjct: 521 NAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAY 580

Query: 144 -DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
              + + +  D   +  L+    ++  VD A ++  EM  +   + PD  + G L+   +
Sbjct: 581 RSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK--GIAPDVFSYGVLINGFS 638

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G + +A  ++  + +  +     +Y + +    ++G+ E A  + D+M+ KG+ P+ V
Sbjct: 639 KLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAV 698

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
               +ID    +G +  AF +  E K +G+      Y++L+  C    + ++A+ ++   
Sbjct: 699 TYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN 758

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL----CPNTITYSILLVACER 378
           K      + +  NALI  +    +     EVL+ +          PN +TY+I++    +
Sbjct: 759 KK-GCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + ++E    L  Q +   ++P ++ +  ++
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLL 847



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/483 (20%), Positives = 181/483 (37%), Gaps = 74/483 (15%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P   T+++L+      K  E A  +L  +   G+  D   Y+ LI    K    DA    
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334

Query: 146 MFE------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           + E      N+KP   +++  I    + G +++A  +   M A    + P      +L++
Sbjct: 335 VHEMVSHGINIKP--YMYDCCICVMSKEGVMEKAKALFDGMIA--SGLIPQAQAYASLIE 390

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                  V +  E+   + K NI  +P  Y   +     +GD + A ++  +M   G  P
Sbjct: 391 GYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRP 450

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V  + LI       +   A  +L+E K QGI+  I  Y+SL+   S AK   +A    
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------------ 367
             M    LKP   T  A I+   +  +     + + +M+  G+ PN +            
Sbjct: 511 VEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK 570

Query: 368 -----------------------TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
                                  TY++L+    + D V+    +  + +  G+ P++  +
Sbjct: 571 GKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSY 630

Query: 405 KCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 464
             +I                     +G  ++ N     A  ++ E +  G  P V + + 
Sbjct: 631 GVLI---------------------NGFSKLGN--MQKASSIFDEMVEEGLTPNVIIYNM 667

Query: 465 VLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFG 522
           +LG        +  + L++ + V          C++IDG+ +      AF L +E    G
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727

Query: 523 IVP 525
           +VP
Sbjct: 728 LVP 730



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 154/384 (40%), Gaps = 39/384 (10%)

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVL 115
           D V     F+   +++ I+EA   F     L   P LS   +L+         +  + V 
Sbjct: 150 DGVLFGILFDGYIAKEYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVY 209

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFENVK-------------------- 151
           + + E  +  D K Y  LI    ++G V    D +F+  K                    
Sbjct: 210 KGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMI 269

Query: 152 -----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
                P +  ++ LI    +   ++ A  +L EM++    V  D+ T   L+        
Sbjct: 270 CKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDS--LGVSLDNHTYSLLIDGLLKGRN 327

Query: 207 VDRARE-VYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
            D A+  V++M+ H  NIK  P +Y   I   S+ G  E A +++D M   G+IP     
Sbjct: 328 ADAAKGLVHEMVSHGINIK--PYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAY 385

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++LI+       V   +E+L E K + I +   +Y +++    ++ +   A  + + M +
Sbjct: 386 ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA 445

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
              +P V     LI       +    M VL +MK  G+ P+   Y+ L++   +   ++ 
Sbjct: 446 SGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDE 505

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII 408
               L +  E+G+ PN   +   I
Sbjct: 506 ARSFLVEMVENGLKPNAFTYGAFI 529



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 16/182 (8%)

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           VY  M ++ V+ D      LI     AG V+   ++L + + +  +  +           
Sbjct: 208 VYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATL----------- 256

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
              N   AL+L E M    L P   T + LI  LC   +L     +L +M SLG+  +  
Sbjct: 257 ---NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNH 313

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHV 425
           TYS+L+    +  + +    L+ +    G+     M+ C I + S+    EKA+ L + +
Sbjct: 314 TYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGM 373

Query: 426 LS 427
           ++
Sbjct: 374 IA 375


>gi|255577248|ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531022|gb|EEF32875.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 808

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 169/393 (43%), Gaps = 57/393 (14%)

Query: 81  FRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           FR+ KL  N    T  +NM++ + A    ++ A  +   +QE   K D + Y  LI    
Sbjct: 130 FRWMKLQKNYCARTDMYNMMIRLHARHNLTDQARGLFFEMQEWRCKPDSETYNALINAHG 189

Query: 139 KSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           ++G+         D + E + P R  +N LI ACG SG    A  V  +M    + V PD
Sbjct: 190 RAGQWRWAMNIMEDMLREAIPPSRSTYNNLINACGSSGNWREALKVSKQMTE--NGVGPD 247

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +T   ++ A     Q  +A   ++++   NI+       I I C  + G  E A  +++
Sbjct: 248 LVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTRNIVIYCLVKLGQCEKAIDIFN 307

Query: 251 DMTKK-------------------------------------GVIPDEVFLSALIDFAGH 273
            M +K                                     G+ P  V  +ALI     
Sbjct: 308 SMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTIVSYNALIGAYAF 367

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
            G  E A  + ++ K  G+   ++SY+SL+ +   +K  +KA E++  MK  KLKP V +
Sbjct: 368 HGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVS 427

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KDDVEVGLMLLS 390
            NALI A      L   ++VL +M+  G+ PN +T   LL AC R   K +++    +LS
Sbjct: 428 FNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQKVNIDA---VLS 484

Query: 391 QAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 421
            AK  G+  N V     IG  M    YEKA  L
Sbjct: 485 AAKMRGIKLNTVACNSAIGSYMNVGEYEKAVAL 517



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 176/396 (44%), Gaps = 21/396 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G   E + + + M   G+   D V H    +  K+     +A  +F+L
Sbjct: 215 TYNNLINACGSSGNWREALKVSKQMTENGV-GPDLVTHNIVLSAYKTGAQYSKALSYFEL 273

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE--AGLKADCKLYTTLITTCAKS 140
           +      P  +T N+++         E A  +   ++E  A  + D   +T++I   + S
Sbjct: 274 MKGTNIRPDTTTRNIVIYCLVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYSLS 333

Query: 141 GKVD---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+V+   A+F     E + P  V +NALI A    G  + A  V  ++ A    + PD +
Sbjct: 334 GQVENCKAVFSTMLAEGLTPTIVSYNALIGAYAFHGMSEEALSVFKKIKAS--GLLPDVV 391

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +  +L+ +   + Q  +ARE++ M+ K  +K     +   I+     G    A  V  +M
Sbjct: 392 SYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREM 451

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            + G+ P+ V +  L+   G  G+      +L  AK +GI +  ++ +S +G+  N   +
Sbjct: 452 EQDGIHPNIVTICTLLAACGRCGQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEY 511

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +KA+ LY  M+ +K+ P   T   LI+  C   +  K +E  +DM  L +       S +
Sbjct: 512 EKAVALYNSMRKMKVAPNSVTYTVLISGCCKMSKYGKAIEFFADMMELKIALTKEVCSSV 571

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + A  ++  +     + +  K  G  P+++ F  ++
Sbjct: 572 ICAYSKQGQITEAESIFTMMKMAGCCPDIITFTAML 607



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 168/391 (42%), Gaps = 15/391 (3%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----N 89
           L++ G+  + ID+   M E++     D V      ++      ++     F  +      
Sbjct: 293 LVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLT 352

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
           PT+ ++N L+   A    SE A  V + ++ +GL  D   YT+L+++  +S    K   M
Sbjct: 353 PTIVSYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREM 412

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F       +KP+ V FNALI A G +G +  A  VL EM  E   + P+ +TI  L+ AC
Sbjct: 413 FNMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREM--EQDGIHPNIVTICTLLAAC 470

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              GQ      V        IK        AI      G++E A ++Y+ M K  V P+ 
Sbjct: 471 GRCGQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPNS 530

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LI       K   A E   +     I++     SS++ A S      +A  ++  
Sbjct: 531 VTYTVLISGCCKMSKYGKAIEFFADMMELKIALTKEVCSSVICAYSKQGQITEAESIFTM 590

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK     P + T  A++ A   G+   K  +++ +M+   +  +TI  S L+ A  ++ +
Sbjct: 591 MKMAGCCPDIITFTAMLHAYNAGEHWGKACDLIQEMEDYDIQLDTIACSALMRAFNKRGN 650

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
               L+L    KE  +  +  +F  ++  CS
Sbjct: 651 PSQVLILAEFMKEKEIPFSDAIFFEMVSACS 681



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 97/442 (21%), Positives = 183/442 (41%), Gaps = 70/442 (15%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  ++  + SYN LI      G   E + + + ++  GLL  D V +    +     K  
Sbjct: 348 AEGLTPTIVSYNALIGAYAFHGMSEEALSVFKKIKASGLLP-DVVSYTSLLSSYGRSKQP 406

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           K+A   F ++      P + +FN L+    S+     A +VLR +++ G+  +     TL
Sbjct: 407 KKAREMFNMMKKAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTL 466

Query: 134 ITTCAKSGK---VDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +  C + G+   +DA+        +K + V  N+ I +    G  ++A  +   M     
Sbjct: 467 LAACGRCGQKVNIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRK--M 524

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            V P+ +T   L+  C    +  +A E +  + +  I  T EV +  I   S+ G    A
Sbjct: 525 KVAPNSVTYTVLISGCCKMSKYGKAIEFFADMMELKIALTKEVCSSVICAYSKQGQITEA 584

Query: 246 CSVYDDMTKKGVIPDEVFLSALI---DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
            S++  M   G  PD +  +A++   +   H GK   A +++QE ++  I +  I+ S+L
Sbjct: 585 ESIFTMMKMAGCCPDIITFTAMLHAYNAGEHWGK---ACDLIQEMEDYDIQLDTIACSAL 641

Query: 303 M-----------------------------------GACSNAKNWQKALELYEHMKSIKL 327
           M                                    ACS  ++W+  L L + M+    
Sbjct: 642 MRAFNKRGNPSQVLILAEFMKEKEIPFSDAIFFEMVSACSLLRDWRTILNLMKLMEPSFS 701

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG-- 385
             ++  +N L+  L    ++   M++   + + G   N  TYSI+L     K+ + VG  
Sbjct: 702 VVSIGLLNQLLHVLGRSGKIESMMKLFYKITASGAEINFNTYSIML-----KNLLAVGNW 756

Query: 386 ---LMLLSQAKEDGVIPNLVMF 404
              + +L   ++ G+ P++ M+
Sbjct: 757 RKYIEVLEWMEDAGIQPSIGMY 778



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/295 (25%), Positives = 131/295 (44%), Gaps = 29/295 (9%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           ++N +I    +    D+A  +  EM  +     PD  T  AL+ A   AGQ   A  + +
Sbjct: 145 MYNMMIRLHARHNLTDQARGLFFEM--QEWRCKPDSETYNALINAHGRAGQWRWAMNIME 202

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFA 271
            + +  I  +   Y   IN C  +G+W  A  V   MT+ GV PD     + LSA    A
Sbjct: 203 DMLREAIPPSRSTYNNLINACGSSGNWREALKVSKQMTENGVGPDLVTHNIVLSAYKTGA 262

Query: 272 GHAGKVEAAFEILQ--EAKNQGISVGIISYSSL-MGACSNAKNWQKALELYEHM--KSIK 326
            ++ K  + FE+++    +    +  I+ Y  + +G C      +KA++++  M  K  +
Sbjct: 263 QYS-KALSYFELMKGTNIRPDTTTRNIVIYCLVKLGQC------EKAIDIFNSMREKRAE 315

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
            +P + T  ++I       Q+     V S M + GL P  ++Y+ L+ A       E  L
Sbjct: 316 CRPDIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLTPTIVSYNALIGAYAFHGMSEEAL 375

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KAR---------TLNEHVLSFNS 430
            +  + K  G++P++V +  ++    R  +  KAR          L  +V+SFN+
Sbjct: 376 SVFKKIKASGLLPDVVSYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVSFNA 430



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 105/219 (47%), Gaps = 3/219 (1%)

Query: 197 LMKACANAGQVDRAREVYKMIH-KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           L+K     G ++ +  V++ +  + N     ++Y + I   ++    + A  ++ +M + 
Sbjct: 113 LIKEITQRGALEHSNLVFRWMKLQKNYCARTDMYNMMIRLHARHNLTDQARGLFFEMQEW 172

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
              PD    +ALI+  G AG+   A  I+++   + I     +Y++L+ AC ++ NW++A
Sbjct: 173 RCKPDSETYNALINAHGRAGQWRWAMNIMEDMLREAIPPSRSTYNNLINACGSSGNWREA 232

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           L++ + M    + P + T N +++A   G Q  K +     MK   + P+T T +I++  
Sbjct: 233 LKVSKQMTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPDTTTRNIVIYC 292

Query: 376 CERKDDVEVGLMLLSQAKEDGV--IPNLVMFKCIIGMCS 412
             +    E  + + +  +E      P++V F  II + S
Sbjct: 293 LVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYS 331


>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Brachypodium distachyon]
          Length = 675

 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 157/342 (45%), Gaps = 11/342 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAM 146
           P    F+ L+S  A +   + A  +L   Q  GL       T LI+    +G+V   +A+
Sbjct: 233 PDAPLFSDLISAFARAALPDAALDLLASAQAIGLTPRSNAVTALISALGGAGRVAEAEAL 292

Query: 147 F------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           F        +KP    +NAL+    + G++  A  VL EM+     V PD  T   L+ A
Sbjct: 293 FLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSD--CGVAPDEATYSLLVDA 350

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              AG+ + AR + K +    +K +  V++  +      GDW+ A +V  +M   GV PD
Sbjct: 351 YTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPD 410

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
             F + +ID  G    +  A +     + +GI   ++++++L+ A        +A+EL+E
Sbjct: 411 RHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFE 470

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+     P  +T N +I  L + ++      +LS+MK  GL PN ITY+ L+    R  
Sbjct: 471 EMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSG 530

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
             +  +  +   K DG+ P+  M+  ++   ++R      LN
Sbjct: 531 RFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALN 572



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 142/306 (46%), Gaps = 13/306 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P  +T+++L+     +   E A  +L+ ++  G+K    +++ ++      G     F  
Sbjct: 339 PDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAV 398

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V+PDR  +N +I   G+   +  A D    M  E   ++PD +T   L+ A 
Sbjct: 399 LREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREE--GIEPDVVTWNTLIDAH 456

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+ DRA E+++ + + N       Y I IN   +   W    ++  +M ++G++P+ 
Sbjct: 457 RKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWVGVETMLSEMKEQGLVPNI 516

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + L+D  G +G+ + A E ++  K  G+      Y +L+ A +       AL + + 
Sbjct: 517 ITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 576

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACER 378
           M++  L+ +   +N+L+ A  +  ++ +   VL  MK   L P+ ITY+ L   L+  E+
Sbjct: 577 MRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKALIRIEQ 636

Query: 379 KDDVEV 384
            D V V
Sbjct: 637 FDKVPV 642



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 158/359 (44%), Gaps = 57/359 (15%)

Query: 112 FQVLRLVQEAGLKADCKLYTTLITTC--AKSGKVDAMFENV---------KPDRVVFNAL 160
            ++L L++E G   D   Y+ L+ +    +     A+ E +         +PD  +F+ L
Sbjct: 182 LRLLALIREHGFLPDLASYSHLLASLLNTRDPPDAAILERLLGDLRESRLEPDAPLFSDL 241

Query: 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHK 219
           I+A  ++   D A D+LA  +A+   + P    + AL+ A   AG+V  A  ++ +    
Sbjct: 242 ISAFARAALPDAALDLLA--SAQAIGLTPRSNAVTALISALGGAGRVAEAEALFLEFFLA 299

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
             IK     Y   +    + G  + A  V D+M+  GV PDE   S L+D    AG+ E+
Sbjct: 300 GEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSDCGVAPDEATYSLLVDAYTRAGRWES 359

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK------------------------- 314
           A  +L+E +  G+      +S ++    +  +WQK                         
Sbjct: 360 ARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMID 419

Query: 315 ----------ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                     A++ +  M+   ++P V T N LI A   G +  + ME+  +M+     P
Sbjct: 420 TFGKYNCLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPP 479

Query: 365 NTITYSI---LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
            T TY+I   LL   ER   VE    +LS+ KE G++PN++ +  ++ +  R  R+++A
Sbjct: 480 GTTTYNIMINLLGEQERWVGVET---MLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEA 535



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 121/293 (41%), Gaps = 41/293 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDA 145
           P+   F+ +++      D + AF VLR +  +G++ D   Y  +I T  K       +DA
Sbjct: 374 PSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDA 433

Query: 146 MF----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP--------------- 186
                 E ++PD V +N LI A  + G  DRA ++  EM     P               
Sbjct: 434 FNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGE 493

Query: 187 ------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                             + P+ IT   L+     +G+   A E  +++    +K +P +
Sbjct: 494 QERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADGLKPSPTM 553

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   +N  +Q G  + A +V   M   G+    V L++L++  G   +V  AF +LQ  K
Sbjct: 554 YHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLMNAFGEDRRVVEAFSVLQFMK 613

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
              +   +I+Y++LM A    + + K   +YE M +    P       L +AL
Sbjct: 614 ENDLRPDVITYTTLMKALIRIEQFDKVPVIYEEMITSGCAPDRKARAMLRSAL 666


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 189/408 (46%), Gaps = 17/408 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + + G++ + ++++++M  KG+    + Y       C+ Q  +  AF     +     
Sbjct: 363 NGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQN-MARAFELLDEMKKRKL 421

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
            PT+ T++++++      + +G   +LR +   GLK +  +YTTL+T  AK G+V+    
Sbjct: 422 APTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRM 481

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           + E ++     PD   +N+LI    ++  ++ A   L EM      + P+  T GA +  
Sbjct: 482 ILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLE--RRLRPNAHTYGAFIDG 539

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            + AG+++ A   +  +    +     +YT  I    + G+   A SV+  +  + V+ D
Sbjct: 540 YSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQD 599

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               S LI      GK+  AF I  E + +G+     +Y+SL+       N  KA +L E
Sbjct: 600 VQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLE 659

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    + P + T N LI  LC   ++ +   +  D++  GL PN +TY+ ++    +  
Sbjct: 660 EMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSK 719

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVL 426
           +      LL +    GV P+  ++  I+  C +  ++EKA  L + +L
Sbjct: 720 NPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEML 767



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 160/345 (46%), Gaps = 20/345 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DA--- 145
           P+L + N L+         E  ++V   +    +  D   YT +I+   K G V DA   
Sbjct: 178 PSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRV 237

Query: 146 MFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----PDHITIGAL 197
           + E       P+ V +N +I    ++  +D A ++   M      VD    PD  T   L
Sbjct: 238 LLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSM------VDKGLVPDLYTYDIL 291

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +       +   A+ +   +    +K  P  Y   I+   + GD E A  + D+M   G+
Sbjct: 292 INGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGI 351

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             + +  + L++    AGK+E A EI+QE   +G+     +YS L+      +N  +A E
Sbjct: 352 EANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFE 411

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L + MK  KL PTV T + +I  LC    L  T  +L +M   GL PN + Y+ L+ A  
Sbjct: 412 LLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHA 471

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMC-SRRYEKART 420
           ++  VE   M+L + +E G++P++  +   IIG C ++R E+ART
Sbjct: 472 KEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEART 516



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 101/468 (21%), Positives = 210/468 (44%), Gaps = 33/468 (7%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-C-------AKS 140
           +P L T+N+++     ++  + A ++ R + + GL  D   Y  LI   C       AK 
Sbjct: 247 SPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKL 306

Query: 141 GKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             ++ +   +KP+ + +NALI    + G +++AF +  EM A    ++ + I    L+  
Sbjct: 307 MLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVA--CGIEANLIIWNTLLNG 364

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              AG++++A E+ + + +  ++   + Y++ I    +  +   A  + D+M K+ + P 
Sbjct: 365 VCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPT 424

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  S +I+     G ++    IL+E    G+    + Y++LM A +     +++  + E
Sbjct: 425 VLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILE 484

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+   + P V   N+LI   C   ++ +    L +M    L PN  TY   +    +  
Sbjct: 485 RMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAG 544

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR----------RYEKARTLNEHVLSFN 429
           ++E+     ++    GV+PN+ ++  +I G C            R+  +R + + V +++
Sbjct: 545 EMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYS 604

Query: 430 SGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL--- 485
                +  N     A  ++ E    G +P     + ++       N D   +L+E +   
Sbjct: 605 VLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIK 664

Query: 486 GVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP-CVSF 529
           G++ D +  +    LIDG    GE + RA +L ++    G+ P CV++
Sbjct: 665 GINPDIVTYN---ILIDGLCKAGEIE-RAKNLFDDIEGRGLTPNCVTY 708



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/401 (22%), Positives = 180/401 (44%), Gaps = 36/401 (8%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H+Y   I    + G +        +M   G+L    +Y A     CK +  + EAF  F+
Sbjct: 531 HTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCK-EGNVTEAFSVFR 589

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            + +      + T+++L+   + +     AF +   +QE GL  +   Y +LI+   K G
Sbjct: 590 FILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQG 649

Query: 142 KVDAM--------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            VD           + + PD V +N LI    ++G ++RA ++  ++  E   + P+ +T
Sbjct: 650 NVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDI--EGRGLTPNCVT 707

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYD 250
             A++     +     A   ++++ +  ++G P    +Y + +N C +   +E A  ++ 
Sbjct: 708 YAAMVDGYCKSKNPTAA---FQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQ 764

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M +KG     V  + LI+    +GK++ A  +L+E   +      ++Y+SL+     A 
Sbjct: 765 EMLEKG-FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAG 823

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
              +A  L+  M+   + PT  T  +L+    +   + +   +  +M + G+ P+ +TY 
Sbjct: 824 MMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYY 883

Query: 371 IL----------LVACERKDDVEVGLMLLSQAKEDGVIPNL 401
           ++          + AC+ KD++ V  M +S A  D +I  L
Sbjct: 884 VMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQAL 924



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 156/358 (43%), Gaps = 18/358 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    +QG + +   LLE+M  KG+      Y+     +CK+ + I+ A   F  
Sbjct: 637 TYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGE-IERAKNLFDD 695

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T+  ++     SK+   AFQ+L  +   G+  D  +Y  ++  C K  K
Sbjct: 696 IEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEK 755

Query: 143 VDA-------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            +        M E      V FN LI    +SG +  A  +L EM  +     P+H+T  
Sbjct: 756 FEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEK--QFIPNHVTYT 813

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+     AG +  A+ ++  + + N+  T + YT  ++     G+     +++++M  K
Sbjct: 814 SLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAK 873

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G+ PD++    +ID     G V  A ++  E   +G+ + + +Y +L+ A    + + + 
Sbjct: 874 GIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEV 933

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           L+L   +     +  + T + +         + +  EVL  M   G   NT +   L+
Sbjct: 934 LKLLNEIGESGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLV 991



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 2/165 (1%)

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+ V    L+D     G +  A  +    KN      ++S +SL+G        +   ++
Sbjct: 143 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 202

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++ M + K+ P V T   +I+A C    +     VL +M   G  PN +TY++++    R
Sbjct: 203 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCR 262

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
              ++  + L     + G++P+L  +  +I G C  +R  +A+ +
Sbjct: 263 ARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLM 307


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 195/428 (45%), Gaps = 26/428 (6%)

Query: 18  HANYAHDVSEQLH---SYNRLIR---QGRISECID-LLEDMERKGLLDMDKVYHARFFNV 70
           +  +A  ++++ H   +YN L+    + R   C++ +LE+M   G    +        + 
Sbjct: 116 YFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSF 175

Query: 71  CKSQKAIKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
            KS+K ++EAF F     KL   P  S +  L+   ++S+DS+    + + +QE G   +
Sbjct: 176 IKSRK-LREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVN 234

Query: 127 CKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLA 178
             L+TTLI   A+ G+VDA           +++PD V++N  I   G++G VD A+    
Sbjct: 235 VHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFH 294

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
           EM A  + +  D +T  +++     A +++ A E+++ + +         Y   I     
Sbjct: 295 EMKA--NGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGM 352

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G +E A S+ +   +KG IP  V  + ++   G  G+V+ A +  +E K   I   + +
Sbjct: 353 AGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP-NLST 411

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y+ ++     A   + AL + + MK   L P V T+N ++  LC   +L     +   + 
Sbjct: 412 YNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLD 471

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRY 415
                P+ +TY  L+    R   V+    L  Q  +   IPN V++  +I     C R+ 
Sbjct: 472 HKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKE 531

Query: 416 EKARTLNE 423
           +  +  NE
Sbjct: 532 DGHKIYNE 539



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 194/440 (44%), Gaps = 53/440 (12%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAFRFF 84
           ++YN +I      G+  +   LLE   RKG +     Y+      C  +K  + EA + F
Sbjct: 341 YAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCIL--SCLGRKGQVDEALKKF 398

Query: 85  KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + +     P LST+N+++ +   +   E A  V   +++AGL  +      ++    K+ 
Sbjct: 399 EEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQ 458

Query: 142 KVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEM-------NAEVHP 186
           ++D   ++FE +     +PD V + +LI   G+ G VD A+ +  +M       NA V+ 
Sbjct: 459 RLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYT 518

Query: 187 --------------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220
                                       PD + +   M     AG++++ R +++ I   
Sbjct: 519 SLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNL 578

Query: 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
                   YTI I+   + G    A  ++  M ++G + D    + +ID    +GKV  A
Sbjct: 579 GFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKA 638

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
           +++L+E K +G    +++Y S++   +      +A  L+E  KS  ++  V   ++LI  
Sbjct: 639 YQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDG 698

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
                ++ +   ++ ++   GL PN  T++ LL A  + +++   L+     K+    PN
Sbjct: 699 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPN 758

Query: 401 LVMFKCII-GMCS-RRYEKA 418
            + +  +I G+C  R++ KA
Sbjct: 759 YITYSILIHGLCKIRKFNKA 778



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 162/385 (42%), Gaps = 48/385 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFKLVPNPT 91
           L R GR+ E   L E M     +    VY +    FF   + +   K      +L  +P 
Sbjct: 489 LGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPD 548

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMFE 148
           L   N  M     + + E    + + ++  G   D + YT LI    K+G   +   +F 
Sbjct: 549 LLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFY 608

Query: 149 NVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            +K      D   +N +I    +SG V++A+ +L EM  + H  +P  +T G+++   A 
Sbjct: 609 TMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH--EPTVVTYGSVIDGLA- 665

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             ++DR  E Y +                                +++   KG+  + V 
Sbjct: 666 --KIDRLDEAYML--------------------------------FEEAKSKGIELNVVI 691

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            S+LID  G  G+++ A+ I++E   +G++  + +++ L+ A   A+   +AL  ++ MK
Sbjct: 692 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK 751

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
            +K  P   T + LI  LC   +  K      +M+  G  PN  TY+ ++    +  ++ 
Sbjct: 752 DLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIV 811

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
               L  + KE G + +  ++  II
Sbjct: 812 EADTLFEKFKEKGGVADSAIYNAII 836



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 100/451 (22%), Positives = 178/451 (39%), Gaps = 42/451 (9%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVD 144
           L PNP L     ++ V    KD   A    R  +    +A C+  Y +L+   A++ K +
Sbjct: 93  LNPNPEL-----VIGVLRRLKDVNNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFN 147

Query: 145 AMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
            + + ++        P       ++ +  +S  +  AF  +  M        P       
Sbjct: 148 CLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRK--LKFRPAFSAYTN 205

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ A + +   D    +++ + +        ++T  I   ++ G  + A S+ D+M    
Sbjct: 206 LIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNS 265

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD V  +  ID  G AGKV+ A++   E K  G+ +  ++Y+S++G    A    +A+
Sbjct: 266 LEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAV 325

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           EL+EHM   K  P     N +I       +      +L   +  G  P+ ++Y+ +L   
Sbjct: 326 ELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCL 385

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIE 436
            RK  V+  L    + K+D  IPNL  +  +I M  +                +G+ +  
Sbjct: 386 GRKGQVDEALKKFEEMKKDA-IPNLSTYNIMIDMLCK----------------AGKLET- 427

Query: 437 NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSN 496
                 AL+V      AG  P V  V+ ++  L      D    + E L           
Sbjct: 428 ------ALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVT 481

Query: 497 LCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
            CSLI+G G +     A+ L E+      +P
Sbjct: 482 YCSLIEGLGRHGRVDEAYKLYEQMLDANQIP 512



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/272 (19%), Positives = 122/272 (44%), Gaps = 15/272 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L++ G   E  +L   M+ +G +   + Y+      CKS K + +A++  + +      P
Sbjct: 594 LVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGK-VNKAYQLLEEMKTKGHEP 652

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
           T+ T+  ++   A     + A+ +    +  G++ +  +Y++LI    K G++D  +   
Sbjct: 653 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIM 712

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                + + P+   +N L+ A  ++  +  A      M        P++IT   L+    
Sbjct: 713 EELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKD--LKCTPNYITYSILIHGLC 770

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              + ++A   ++ + K   K     YT  I+  ++ G+   A ++++   +KG + D  
Sbjct: 771 KIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSA 830

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
             +A+I+   +A +   A+ + +EA+ +G S+
Sbjct: 831 IYNAIIEGLSNANRASDAYRLFEEARLKGCSI 862


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 195/428 (45%), Gaps = 26/428 (6%)

Query: 18  HANYAHDVSEQLH---SYNRLIR---QGRISECID-LLEDMERKGLLDMDKVYHARFFNV 70
           +  +A  ++++ H   +YN L+    + R   C++ +LE+M   G    +        + 
Sbjct: 116 YFRWAERLTDRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSF 175

Query: 71  CKSQKAIKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
            KS+K ++EAF F     KL   P  S +  L+   ++S+DS+    + + +QE G   +
Sbjct: 176 IKSRK-LREAFTFIQTMRKLKFRPAFSAYTNLIGALSTSRDSDCMLTLFQQMQELGYAVN 234

Query: 127 CKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLA 178
             L+TTLI   A+ G+VDA           +++PD V++N  I   G++G VD A+    
Sbjct: 235 VHLFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFH 294

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
           EM A  + +  D +T  +++     A +++ A E+++ + +         Y   I     
Sbjct: 295 EMKA--NGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGM 352

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G +E A S+ +   +KG IP  V  + ++   G  G+V+ A +  +E K   I   + +
Sbjct: 353 AGKFEDAYSLLERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP-NLST 411

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y+ ++     A   + AL + + MK   L P V T+N ++  LC   +L     +   + 
Sbjct: 412 YNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLD 471

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRY 415
                P+ +TY  L+    R   V+    L  Q  +   IPN V++  +I     C R+ 
Sbjct: 472 HKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKE 531

Query: 416 EKARTLNE 423
           +  +  NE
Sbjct: 532 DGHKIYNE 539



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 194/440 (44%), Gaps = 53/440 (12%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAFRFF 84
           ++YN +I      G+  +   LLE   RKG +     Y+      C  +K  + EA + F
Sbjct: 341 YAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCIL--SCLGRKGQVDEALKKF 398

Query: 85  KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + +     P LST+N+++ +   +   E A  V   +++AGL  +      ++    K+ 
Sbjct: 399 EEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQ 458

Query: 142 KVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEM-------NAEVHP 186
           ++D   ++FE +     +PD V + +LI   G+ G VD A+ +  +M       NA V+ 
Sbjct: 459 RLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYT 518

Query: 187 --------------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220
                                       PD + +   M     AG++++ R +++ I   
Sbjct: 519 SLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNL 578

Query: 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
                   YTI I+   + G    A  ++  M ++G + D    + +ID    +GKV  A
Sbjct: 579 GFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKA 638

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
           +++L+E K +G    +++Y S++   +      +A  L+E  KS  ++  V   ++LI  
Sbjct: 639 YQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDG 698

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
                ++ +   ++ ++   GL PN  T++ LL A  + +++   L+     K+    PN
Sbjct: 699 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPN 758

Query: 401 LVMFKCII-GMCS-RRYEKA 418
            + +  +I G+C  R++ KA
Sbjct: 759 YITYSILIHGLCKIRKFNKA 778



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 162/385 (42%), Gaps = 48/385 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFKLVPNPT 91
           L R GR+ E   L E M     +    VY +    FF   + +   K      +L  +P 
Sbjct: 489 LGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPD 548

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMFE 148
           L   N  M     + + E    + + ++  G   D + YT LI    K+G   +   +F 
Sbjct: 549 LLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEAYELFY 608

Query: 149 NVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            +K      D   +N +I    +SG V++A+ +L EM  + H  +P  +T G+++   A 
Sbjct: 609 TMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGH--EPTVVTYGSVIDGLA- 665

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             ++DR  E Y +                                +++   KG+  + V 
Sbjct: 666 --KIDRLDEAYML--------------------------------FEEAKSKGIELNVVI 691

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            S+LID  G  G+++ A+ I++E   +G++  + +++ L+ A   A+   +AL  ++ MK
Sbjct: 692 YSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMK 751

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
            +K  P   T + LI  LC   +  K      +M+  G  PN  TY+ ++    +  ++ 
Sbjct: 752 DLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIV 811

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
               L  + KE G + +  ++  II
Sbjct: 812 EADTLFEKFKEKGGVADSAIYNAII 836



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 100/451 (22%), Positives = 178/451 (39%), Gaps = 42/451 (9%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK-LYTTLITTCAKSGKVD 144
           L PNP L     ++ V    KD   A    R  +    +A C+  Y +L+   A++ K +
Sbjct: 93  LNPNPEL-----VIGVLRRLKDVNNAVNYFRWAERLTDRAHCREAYNSLLMVMARTRKFN 147

Query: 145 AMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
            + + ++        P       ++ +  +S  +  AF  +  M        P       
Sbjct: 148 CLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRK--LKFRPAFSAYTN 205

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ A + +   D    +++ + +        ++T  I   ++ G  + A S+ D+M    
Sbjct: 206 LIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNS 265

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD V  +  ID  G AGKV+ A++   E K  G+ +  ++Y+S++G    A    +A+
Sbjct: 266 LEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRLNEAV 325

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           EL+EHM   K  P     N +I       +      +L   +  G  P+ ++Y+ +L   
Sbjct: 326 ELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRRKGCIPSVVSYNCILSCL 385

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIE 436
            RK  V+  L    + K+D  IPNL  +  +I M  +                +G+ +  
Sbjct: 386 GRKGQVDEALKKFEEMKKDA-IPNLSTYNIMIDMLCK----------------AGKLET- 427

Query: 437 NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSN 496
                 AL+V      AG  P V  V+ ++  L      D    + E L           
Sbjct: 428 ------ALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVT 481

Query: 497 LCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
            CSLI+G G +     A+ L E+      +P
Sbjct: 482 YCSLIEGLGRHGRVDEAYKLYEQMLDANQIP 512



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/272 (19%), Positives = 122/272 (44%), Gaps = 15/272 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L++ G   E  +L   M+ +G +   + Y+      CKS K + +A++  + +      P
Sbjct: 594 LVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGK-VNKAYQLLEEMKTKGHEP 652

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
           T+ T+  ++   A     + A+ +    +  G++ +  +Y++LI    K G++D  +   
Sbjct: 653 TVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIM 712

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                + + P+   +N L+ A  ++  +  A      M        P++IT   L+    
Sbjct: 713 EELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKD--LKCTPNYITYSILIHGLC 770

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              + ++A   ++ + K   K     YT  I+  ++ G+   A ++++   +KG + D  
Sbjct: 771 KIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSA 830

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
             +A+I+   +A +   A+ + +EA+ +G S+
Sbjct: 831 IYNAIIEGLSNANRASDAYRLFEEARLKGCSI 862


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 183/396 (46%), Gaps = 13/396 (3%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV       N   ++G   +      +M  +G+L     Y++    +CK+Q   K     
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +V N   P   T+N ++    SS   + A   L+ ++  G++ D   Y+ L+    K+
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314

Query: 141 GK-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+        D+M +  +KP+   +  L+      GA+     +L  M    + + PDH 
Sbjct: 315 GRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPDHY 372

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
               L+ A AN G+VD+A  V+  + +  +      Y   I    ++G  E A   ++ M
Sbjct: 373 VFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             +G+ P  +  ++LI       K E A E++ E  ++GI +  I ++S++ +       
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            ++ +L+E M  I +KP V T N LI   C   ++ + M++LS M S+GL PNT+TYS L
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +    +   +E  L+L  + +  GV P+++ +  I+
Sbjct: 553 INGYCKISRMEDALVLFKEMESSGVSPDIITYNIIL 588



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 157/354 (44%), Gaps = 22/354 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           P L T+ +L+  C  +   +  F  L  V + G + D   +T L+   CA     DAM  
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMK 199
            ++        P+   +N L+           A ++L  M +       PD ++   ++ 
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGT-PEVYT----IAINCCSQTGDWEFACSVYDDMTK 254
                G  D+A   Y   H+   +G  P+V T    IA  C +Q  D   A  V + M K
Sbjct: 205 GFFKEGDSDKAYSTY---HEMLDRGILPDVVTYNSIIAALCKAQAMDK--AMEVLNTMVK 259

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            GV+PD +  ++++     +G+ + A   L++ ++ G+   +++YS LM          +
Sbjct: 260 NGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCME 319

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ++++ M    LKP ++T   L+        L +   +L  M   G+ P+   +SIL+ 
Sbjct: 320 ARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILIC 379

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNEHVL 426
           A   +  V+  +++ S+ ++ G+ PN V +  +IG +C S R E A    E ++
Sbjct: 380 AYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/383 (20%), Positives = 163/383 (42%), Gaps = 15/383 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + GR  E   + + M ++GL      Y         ++ A+ E      L+     +P
Sbjct: 311 LCKNGRCMEARKIFDSMTKRGLKPEITTY-GTLLQGYATKGALVEMHGLLDLMVRNGIHP 369

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMF-- 147
               F++L+   A+    + A  V   +++ GL  +   Y  +I    KSG+V DAM   
Sbjct: 370 DHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYF 429

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                E + P  +V+N+LI         +RA +++ EM      +  + I   +++ +  
Sbjct: 430 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD--RGICLNTIFFNSIIDSHC 487

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G+V  + ++++++ +  +K     Y   IN     G  + A  +   M   G+ P+ V
Sbjct: 488 KEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTV 547

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             S LI+      ++E A  + +E ++ G+S  II+Y+ ++      +    A ELY  +
Sbjct: 548 TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 607

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
                +  +ST N ++  LC        +++  ++  + L     T++I++ A  +    
Sbjct: 608 TESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRN 667

Query: 383 EVGLMLLSQAKEDGVIPNLVMFK 405
           +    L      +G++PN   ++
Sbjct: 668 DEAKDLFVAFSSNGLVPNYWTYR 690



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 9/247 (3%)

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           + AV R ++ +A   A+   V PD  T G L+  C  AG++D        + K   +   
Sbjct: 66  AAAVSR-YNRMARAGAD--EVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDA 122

Query: 227 EVYT-IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
             +T +    C+     +    V   MT+ G IP+    + L+       + + A E+L 
Sbjct: 123 IAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLH 182

Query: 286 ---EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
              + +  G    ++SY++++       +  KA   Y  M    + P V T N++I ALC
Sbjct: 183 MMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALC 242

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
               + K MEVL+ M   G+ P+ +TY SIL   C      E  +  L + + DGV P++
Sbjct: 243 KAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE-AIGFLKKMRSDGVEPDV 301

Query: 402 VMFKCII 408
           V +  ++
Sbjct: 302 VTYSLLM 308


>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 160/334 (47%), Gaps = 15/334 (4%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAM 146
           T+  F+ L+S    S   + A +V   ++ +GLK +   Y  +I  C K G    +V  +
Sbjct: 221 TVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEI 280

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE      V+PDR+ +N+L+  C + G  + A ++  EM      +D D  T   L+ A 
Sbjct: 281 FEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMID--RGIDQDVFTYNTLLDAV 338

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              GQ+D A E+  M+     K  P V  Y+   +  ++ G  E A ++Y++M   G+  
Sbjct: 339 CKGGQMDLAYEI--MLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGL 396

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  + L+      G+ E A ++ +E  + G+   +++Y++L+        + +   ++
Sbjct: 397 DRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVF 456

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + MK  ++ P + T + LI     G    + MEV  + K  GL  + + YS L+ A  + 
Sbjct: 457 KEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKN 516

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             V+  ++LL +  ++G+ PN+V +  II    R
Sbjct: 517 GLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGR 550



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 167/397 (42%), Gaps = 59/397 (14%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR--FFKLVP---NPTLSTFNMLM 99
           +++ E+M R G+   D++ +     VC S+  + EA R  F +++    +  + T+N L+
Sbjct: 278 VEIFEEMLRNGV-QPDRITYNSLLAVC-SRGGLWEAARNLFNEMIDRGIDQDVFTYNTLL 335

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM-------FENVK 151
                    + A++++  +    +  +   Y+T+    AK+G++ DA+       F  + 
Sbjct: 336 DAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIG 395

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
            DRV +N L++   + G  + A  V  EM +    V  D +T  AL+      G+ +   
Sbjct: 396 LDRVSYNTLLSIYAKLGRFEDALKVCKEMGSS--GVKKDVVTYNALLDGYGKQGKFNEVT 453

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            V+K + K  +      Y+  I+  S+   +E A  V+ +  + G+  D V  S LI+  
Sbjct: 454 RVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINAL 513

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA---------------CSNAK------ 310
              G V++A  +L E   +GI   +++Y+S++ A                SN +      
Sbjct: 514 CKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPS 573

Query: 311 ------------NWQKA--LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
                       NW      + Y+ + S K  P               +++   + V   
Sbjct: 574 FMLIEGVDESEINWDDGHVFKFYQQLVSEKEGPAKKER-------LGKEEIRSILSVFKK 626

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
           M  L + PN +T+S +L AC R   +E   MLL + +
Sbjct: 627 MHELEIKPNVVTFSAILNACSRCKSIEDASMLLEELR 663



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 1/145 (0%)

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           SA+I   G  GKVE A  + + A ++G    + ++S+L+ A   +  + +A++++E MK 
Sbjct: 191 SAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKV 250

Query: 325 IKLKPTVSTMNALITALCDGD-QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
             LKP + T NA+I A   G  +  + +E+  +M   G+ P+ ITY+ LL  C R    E
Sbjct: 251 SGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWE 310

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
               L ++  + G+  ++  +  ++
Sbjct: 311 AARNLFNEMIDRGIDQDVFTYNTLL 335



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 38/224 (16%)

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           I+   + G  E A  V++    +G        SALI   G +G  + A ++ +  K  G+
Sbjct: 194 ISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGL 253

Query: 293 SVGIISYSS------------------------------------LMGACSNAKNWQKAL 316
              +++Y++                                    L+  CS    W+ A 
Sbjct: 254 KPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAAR 313

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            L+  M    +   V T N L+ A+C G Q+    E++ +M    + PN +TYS +    
Sbjct: 314 NLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGY 373

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
            +   +E  L L ++ K  G+  + V +  ++ + ++  R+E A
Sbjct: 374 AKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDA 417


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 166/360 (46%), Gaps = 13/360 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---T 91
           L R GR+   + L+ +M ++G+   D +  A    +C+ ++  +    + K++       
Sbjct: 417 LQRTGRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCIN 476

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------- 143
           ++T N L+      K+ +GA +VLR +   G++ D   Y  +I  C K  K+        
Sbjct: 477 IATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRD 536

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           D + +  KPD  +FN++I A    G ++ A  +L +M  ++  V PD ++ G ++     
Sbjct: 537 DMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQM--KIEGVQPDVVSYGTIIDGYCK 594

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           A  + +A E    +    +K    +Y   I    + G+   A  V D M   G+ P  V 
Sbjct: 595 AKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVT 654

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
             +L+ +  HAG V+ A  + ++++   I VG++ Y+ ++          +A+  +E M+
Sbjct: 655 YCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMR 714

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           S  + P   T   L+ A C      +  ++  +M S G+ P+ ++Y+ L+    + D ++
Sbjct: 715 SRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLD 774



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 134/296 (45%), Gaps = 23/296 (7%)

Query: 46  DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF--------FKLVPNPTLSTFNM 97
           ++L  M  KG+ ++D + +      C     I+EA +         FK    P    FN 
Sbjct: 498 EVLRTMVNKGM-ELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFK----PDAYMFNS 552

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------N 149
           ++         E A  +L  ++  G++ D   Y T+I    K+  +    E         
Sbjct: 553 IIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACG 612

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           +KP+ V++NALI   G++G +  A  VL  M  E   + P ++T  +LM    +AG VD 
Sbjct: 613 LKPNAVIYNALIGGYGRNGNISGAIGVLDTM--ESIGIQPTNVTYCSLMHWMCHAGLVDE 670

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A+ +++   K +I+     YTI I    + G  + A + +++M  + + P+++  + L+ 
Sbjct: 671 AKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMY 730

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
               +G  E A ++  E  + GI    +SY++L+   S   +  KA+E    + SI
Sbjct: 731 AYCKSGNNEEASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLDKAIEKAAEISSI 786



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 176/405 (43%), Gaps = 24/405 (5%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKV--YHARFFNVCKSQK--- 75
           V+   +SY  +I+     G++ +   +L D+   GL        Y+     +CKS +   
Sbjct: 225 VTPNGYSYTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVDE 284

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           AI+   R  +    P++ TF +L++    S        +LR ++  G+  +  +   LI 
Sbjct: 285 AIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVGALLREMEGLGITPNEVICNELID 344

Query: 136 TCAKSGKV-------DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM---NAEV 184
              + G         D M  + +K   V +N +  A  + G ++RA  +L EM      +
Sbjct: 345 WHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALCKEGEMERAERILEEMLSTGMTI 404

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
           H    + +  G L +     G+++    +   + K  +K    + T       Q    + 
Sbjct: 405 HSGLFNSVVAGLLQRT----GRLESVVRLISEMVKRGMKPNDALMTACTKQLCQGRRHQE 460

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  ++  M +KG+  +    +ALI        ++ A E+L+   N+G+ +  I+Y+ ++ 
Sbjct: 461 AVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQ 520

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
            C      ++AL+L + M     KP     N++I A CD  ++ + + +L  MK  G+ P
Sbjct: 521 GCCKDSKIEEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQP 580

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           + ++Y  ++    +  D++     L++    G+ PN V++  +IG
Sbjct: 581 DVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIG 625



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 45/212 (21%)

Query: 223 KGTPEVYTIA--INCCSQTGDWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGHAGKVEA 279
           + +P V T    +   ++TG+    C V+D+M   K V P+    +++I      GKV+ 
Sbjct: 188 RASPSVKTCNALLEALARTGNLGATCKVFDEMRDCKTVTPNGYSYTSMIKALCKVGKVDD 247

Query: 280 AFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
            F+IL +  + G+  S G + Y                                   N L
Sbjct: 248 GFKILSDLIHAGLQQSAGAVPY-----------------------------------NLL 272

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLMLLSQAKEDG 396
           + ALC   ++ + + +   M+   + P+ +T+ IL+   +R D   EVG  LL + +  G
Sbjct: 273 MDALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGLKRSDRFGEVG-ALLREMEGLG 331

Query: 397 VIPNLVMFKCIIGMCSRR---YEKARTLNEHV 425
           + PN V+   +I    R+    E  R  +E V
Sbjct: 332 ITPNEVICNELIDWHCRKGHFTEAIRLFDEMV 363


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 154/331 (46%), Gaps = 11/331 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T N+++     + D E A  ++  +   G+K     Y +++    ++G+ D   E 
Sbjct: 192 PDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREV 251

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V PD   FN LI    ++G ++ A     EM      V PD ++   L+   
Sbjct: 252 FRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGR--RVTPDVVSFSCLIGLF 309

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G++D A E  + + ++ +     +YT+ I    + G    A  V D+M   G +PD 
Sbjct: 310 TRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDV 369

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L++      ++  A E+L E K +G+   + ++++L+       N +KAL+ ++ 
Sbjct: 370 VTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDT 429

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +   +L+P + T N LI  +C    L K  E+  DM S  + PN +TYSIL+ +   K  
Sbjct: 430 ISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQ 489

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           V+     L +    G++PN++ +  II G C
Sbjct: 490 VDNAFAFLDEMVNKGIVPNIMTYNSIIKGYC 520



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 183/411 (44%), Gaps = 34/411 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L+R GR  +  ++   M+  G+    + ++      C++ + ++EA RF+K +      P
Sbjct: 239 LLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGE-LEEALRFYKEMRGRRVTP 297

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
            + +F+ L+ +     + + A + LR ++E GL  D  +YT +I    ++G    M E +
Sbjct: 298 DVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAG---LMLEAL 354

Query: 151 K-----------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +           PD V +N L+    +   +  A ++L EM     P  PD  T   L+ 
Sbjct: 355 RVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVP--PDLCTFTTLIH 412

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G +++A + +  I    ++     Y   I+   + GD   A  ++DDM  + + P
Sbjct: 413 GYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFP 472

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V  S LID     G+V+ AF  L E  N+GI   I++Y+S++     + N  K  +  
Sbjct: 473 NHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFL 532

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M+  K+ P + T N LI       ++ +   +L  M++  + P+ +TY++++      
Sbjct: 533 PKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVH 592

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS 430
            +++    +  +    G+ P+             RY     +N HV++ NS
Sbjct: 593 GNMQEADWVYKKMGARGIEPD-------------RYTYMSMINGHVVAGNS 630



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 121/258 (46%), Gaps = 2/258 (0%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P   VF+ LI    QS     AF+    +    H V        AL+ A + AG      
Sbjct: 87  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLD--HRVPIPAAASNALLAALSRAGWPHLTA 144

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           + Y+++   N +       I ++   +T  +    +V  +M K+ V PD V  + ++D  
Sbjct: 145 DAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDAR 204

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
             AG VEAA  ++    ++GI  G+++Y+S++        W KA E++  M +  + P V
Sbjct: 205 FRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDV 264

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            + N LI   C   +L + +    +M+   + P+ +++S L+    R+ +++     L +
Sbjct: 265 RSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLRE 324

Query: 392 AKEDGVIPNLVMFKCIIG 409
            +E G++P+ V++  +IG
Sbjct: 325 MREFGLMPDGVIYTMVIG 342



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 143/336 (42%), Gaps = 17/336 (5%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KV 143
           P P    F++L+     S+    AF+  RL+ +  +         L+   +++G      
Sbjct: 85  PTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNALLAALSRAGWPHLTA 144

Query: 144 DA----MFENVKPDRVVFNALI-TACG--QSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           DA    +  N + +    N ++ + C   Q G VD    V++EM  E   V PD +T   
Sbjct: 145 DAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVD---TVISEM--EKRCVFPDVVTHNV 199

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ A   AG V+ A  +   +    IK     Y   +    + G W+ A  V+  M   G
Sbjct: 200 MVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACG 259

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V PD    + LI     AG++E A    +E + + ++  ++S+S L+G  +       A 
Sbjct: 260 VAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAA 319

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           E    M+   L P       +I   C    + + + V  +M + G  P+ +TY+ LL   
Sbjct: 320 EYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGL 379

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            ++  +     LL++ KE GV P+L  F  +I G C
Sbjct: 380 CKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYC 415



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/345 (21%), Positives = 148/345 (42%), Gaps = 19/345 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF------FKLVP 88
             R+G +    + L +M   GL+    +Y       C++   + EA R       F  +P
Sbjct: 309 FTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLML-EALRVRDEMVAFGCLP 367

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +  + T+N L++     +    A ++L  ++E G+  D   +TTLI    + G ++   +
Sbjct: 368 D--VVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQ 425

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    ++PD V +N LI    + G + +A ++  +M++    + P+H+T   L+ +
Sbjct: 426 FFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSR--EIFPNHVTYSILIDS 483

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               GQVD A      +    I      Y   I    ++G+          M    V+PD
Sbjct: 484 HCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPD 543

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  + LI      GK+  AF +L+  +N+ +    ++Y+ ++   S   N Q+A  +Y+
Sbjct: 544 LITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYK 603

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
            M +  ++P   T  ++I          K+ ++  +M   GL P+
Sbjct: 604 KMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLAPD 648



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 124/273 (45%), Gaps = 15/273 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++ R+S+  +LL +M+ +G+      +       C+    I++A +FF  + +   
Sbjct: 377 NGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGN-IEKALQFFDTISDQRL 435

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            P + T+N L+       D   A ++   +    +  +   Y+ LI +  + G+VD  F 
Sbjct: 436 RPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFA 495

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                  + + P+ + +N++I    +SG V +    L +M  +   V PD IT   L+  
Sbjct: 496 FLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHD--KVMPDLITYNTLIHG 553

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G++  A  + K++   N++     Y + I+  S  G+ + A  VY  M  +G+ PD
Sbjct: 554 YVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPD 613

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
                ++I+    AG  + +F++  E   +G++
Sbjct: 614 RYTYMSMINGHVVAGNSKKSFQLHDEMLQKGLA 646


>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 160/334 (47%), Gaps = 15/334 (4%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAM 146
           T+  F+ L+S    S   + A +V   ++ +GLK +   Y  +I  C K G    +V  +
Sbjct: 221 TVFAFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEI 280

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE      V+PDR+ +N+L+  C + G  + A ++  EM      +D D  T   L+ A 
Sbjct: 281 FEEMLRNGVQPDRITYNSLLAVCSRGGLWEAARNLFNEMID--RGIDQDVFTYNTLLDAV 338

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              GQ+D A E+  M+     K  P V  Y+   +  ++ G  E A ++Y++M   G+  
Sbjct: 339 CKGGQMDLAYEI--MLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGL 396

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  + L+      G+ E A ++ +E  + G+   +++Y++L+        + +   ++
Sbjct: 397 DRVSYNTLLSIYAKLGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVF 456

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + MK  ++ P + T + LI     G    + MEV  + K  GL  + + YS L+ A  + 
Sbjct: 457 KEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINALCKN 516

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             V+  ++LL +  ++G+ PN+V +  II    R
Sbjct: 517 GLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGR 550



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 167/397 (42%), Gaps = 59/397 (14%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR--FFKLVP---NPTLSTFNMLM 99
           +++ E+M R G+   D++ +     VC S+  + EA R  F +++    +  + T+N L+
Sbjct: 278 VEIFEEMLRNGV-QPDRITYNSLLAVC-SRGGLWEAARNLFNEMIDRGIDQDVFTYNTLL 335

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM-------FENVK 151
                    + A++++  +    +  +   Y+T+    AK+G++ DA+       F  + 
Sbjct: 336 DAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIG 395

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
            DRV +N L++   + G  + A  V  EM +    V  D +T  AL+      G+ +   
Sbjct: 396 LDRVSYNTLLSIYAKLGRFEDALKVCKEMGSS--GVKKDVVTYNALLDGYGKQGKFNEVT 453

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            V+K + K  +      Y+  I+  S+   +E A  V+ +  + G+  D V  S LI+  
Sbjct: 454 RVFKEMKKDRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELINAL 513

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA---------------CSNAK------ 310
              G V++A  +L E   +GI   +++Y+S++ A                SN +      
Sbjct: 514 CKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFGRSTTAEFLVDGVGASNERQSESPT 573

Query: 311 ------------NWQKA--LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
                       NW      + Y+ + S K  P               +++   + V   
Sbjct: 574 FMLIEGVDESEINWDDGHVFKFYQQLVSEKEGPAKKER-------LGKEEIRSILSVFKK 626

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
           M  L + PN +T+S +L AC R   +E   MLL + +
Sbjct: 627 MHELEIKPNVVTFSAILNACSRCKSIEDASMLLEELR 663



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 77/145 (53%), Gaps = 1/145 (0%)

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           SA+I   G  GKVE A  + + A ++G    + ++S+L+ A   +  + +A++++E MK 
Sbjct: 191 SAMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKV 250

Query: 325 IKLKPTVSTMNALITALCDGD-QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
             LKP + T NA+I A   G  +  + +E+  +M   G+ P+ ITY+ LL  C R    E
Sbjct: 251 SGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWE 310

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
               L ++  + G+  ++  +  ++
Sbjct: 311 AARNLFNEMIDRGIDQDVFTYNTLL 335



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 38/224 (16%)

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           I+   + G  E A  V++    +G        SALI   G +G  + A ++ +  K  G+
Sbjct: 194 ISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVSGL 253

Query: 293 SVGIISYSS------------------------------------LMGACSNAKNWQKAL 316
              +++Y++                                    L+  CS    W+ A 
Sbjct: 254 KPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCSRGGLWEAAR 313

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            L+  M    +   V T N L+ A+C G Q+    E++ +M    + PN +TYS +    
Sbjct: 314 NLFNEMIDRGIDQDVFTYNTLLDAVCKGGQMDLAYEIMLEMPGKKILPNVVTYSTMADGY 373

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
            +   +E  L L ++ K  G+  + V +  ++ + ++  R+E A
Sbjct: 374 AKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAKLGRFEDA 417


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 189/408 (46%), Gaps = 17/408 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + + G++ + ++++++M  KG+    + Y       C+ Q  +  AF     +     
Sbjct: 354 NGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQN-MARAFELLDEMKKRKL 412

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
            PT+ T++++++      + +G   +LR +   GLK +  +YTTL+T  AK G+V+    
Sbjct: 413 APTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRM 472

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           + E ++     PD   +N+LI    ++  ++ A   L EM      + P+  T GA +  
Sbjct: 473 ILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLE--RRLRPNAHTYGAFIDG 530

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            + AG+++ A   +  +    +     +YT  I    + G+   A SV+  +  + V+ D
Sbjct: 531 YSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQD 590

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               S LI      GK+  AF I  E + +G+     +Y+SL+       N  KA +L E
Sbjct: 591 VQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLE 650

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    + P + T N LI  LC   ++ +   +  D++  GL PN +TY+ ++    +  
Sbjct: 651 EMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSK 710

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVL 426
           +      LL +    GV P+  ++  I+  C +  ++EKA  L + +L
Sbjct: 711 NPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEML 758



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 136/288 (47%), Gaps = 17/288 (5%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD---------------PDHITI 194
           V PD   +  +I+A  + G V  A  VL EM  +   +D               PD  T 
Sbjct: 220 VLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTY 279

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+       +   A+ +   +    +K  P  Y   I+   + GD E A  + D+M  
Sbjct: 280 DILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVA 339

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G+  + +  + L++    AGK+E A EI+QE   +G+     +YS L+      +N  +
Sbjct: 340 CGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMAR 399

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A EL + MK  KL PTV T + +I  LC    L  T  +L +M   GL PN + Y+ L+ 
Sbjct: 400 AFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMT 459

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMC-SRRYEKART 420
           A  ++  VE   M+L + +E G++P++  +   IIG C ++R E+ART
Sbjct: 460 AHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEART 507



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 88/400 (22%), Positives = 168/400 (42%), Gaps = 19/400 (4%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV-----PNPTLSTF 95
           + E I+L   M  KGL+     Y       C  +++ +      +++     P P   T+
Sbjct: 257 LDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPI--TY 314

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           N L+       D E AF++   +   G++A+  ++ TL+    K+GK++   E       
Sbjct: 315 NALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMME 374

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             V+PD   ++ LI    +   + RAF++L EM      + P  +T   ++      G +
Sbjct: 375 KGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK--RKLAPTVLTYSVIINGLCRCGNL 432

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
                + + +    +K    VYT  +   ++ G  E +  + + M ++G++PD    ++L
Sbjct: 433 QGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSL 492

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I     A ++E A   L E   + +     +Y + +   S A   + A   +  M S  +
Sbjct: 493 IIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGV 552

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P V    ALI   C    + +   V   + S  +  +  TYS+L+    R   +     
Sbjct: 553 LPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFG 612

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
           + S+ +E G++PN   +  +I G C +   +KA  L E +
Sbjct: 613 IFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEM 652



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/372 (21%), Positives = 169/372 (45%), Gaps = 26/372 (6%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H+Y   I    + G +        +M   G+L    +Y A     CK +  + EAF  F+
Sbjct: 522 HTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCK-EGNVTEAFSVFR 580

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            + +      + T+++L+   + +     AF +   +QE GL  +   Y +LI+   K G
Sbjct: 581 FILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQG 640

Query: 142 KVDAM--------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            VD           + + PD V +N LI    ++G ++RA ++  ++  E   + P+ +T
Sbjct: 641 NVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDI--EGRGLTPNCVT 698

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYD 250
             A++     +     A   ++++ +  ++G P    +Y + +N C +   +E A  ++ 
Sbjct: 699 YAAMVDGYCKSKNPTAA---FQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQ 755

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M +KG     V  + LI+    +GK++ A  +L+E   +      ++Y+SL+     A 
Sbjct: 756 EMLEKG-FASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAG 814

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
              +A  L+  M+   + PT  T  +L+    +   + +   +  +M + G+ P+ +TY 
Sbjct: 815 MMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYY 874

Query: 371 ILLVACERKDDV 382
           +++ A  R+ +V
Sbjct: 875 VMIDAYCREGNV 886



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 97/446 (21%), Positives = 198/446 (44%), Gaps = 33/446 (7%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITT-C-------AKSGKVDAMFENVKPDRVVFNALIT 162
           A ++ R + + GL  D   Y  LI   C       AK   ++ +   +KP+ + +NALI 
Sbjct: 260 AIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALID 319

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
              + G +++AF +  EM A    ++ + I    L+     AG++++A E+ + + +  +
Sbjct: 320 GFMRQGDIEQAFRIKDEMVA--CGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGV 377

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           +   + Y++ I    +  +   A  + D+M K+ + P  +  S +I+     G ++    
Sbjct: 378 EPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNA 437

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           IL+E    G+    + Y++LM A +     +++  + E M+   + P V   N+LI   C
Sbjct: 438 ILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFC 497

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
              ++ +    L +M    L PN  TY   +    +  ++E+     ++    GV+PN+ 
Sbjct: 498 KAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVG 557

Query: 403 MFKCII-GMCSR----------RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREA 450
           ++  +I G C            R+  +R + + V +++     +  N     A  ++ E 
Sbjct: 558 IYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSEL 617

Query: 451 IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGF--- 504
              G +P     + ++       N D   +L+E +   G++ D +  +    LIDG    
Sbjct: 618 QEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYN---ILIDGLCKA 674

Query: 505 GEYDPRAFSLLEEAASFGIVP-CVSF 529
           GE + RA +L ++    G+ P CV++
Sbjct: 675 GEIE-RAKNLFDDIEGRGLTPNCVTY 699



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 144/337 (42%), Gaps = 28/337 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    +QG + +   LLE+M  KG+      Y+     +CK+ + I+ A   F  
Sbjct: 628 TYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGE-IERAKNLFDD 686

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T+  ++     SK+   AFQ+L  +   G+  D  +Y  ++  C K  K
Sbjct: 687 IEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEK 746

Query: 143 VDA-------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            +        M E      V FN LI    +SG +  A  +L EM  +     P+H+T  
Sbjct: 747 FEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEK--QFIPNHVTYT 804

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+     AG +  A+ ++  + + N+  T + YT  ++     G+     +++++M  K
Sbjct: 805 SLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAK 864

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQE------AKNQGISVGIISYSSLMGACSNA 309
           G+ PD++    +ID     G V  A ++  E          G  +G+ + S +      A
Sbjct: 865 GIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIA 924

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            N  +A E+   M         +++  L+    DG+Q
Sbjct: 925 GNMDEAAEVLRSMVKFGWVSNTTSLGDLV----DGNQ 957



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 129/316 (40%), Gaps = 47/316 (14%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW------ 242
           P+ +    LM +    G +  A  V+  +   N +  P +    ++C S  GD       
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVF--LGPKNFEFRPSL----LSCNSLLGDLLKGNKV 205

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK-------------- 288
           E    V+D M    V+PD    + +I      G V+ A  +L E                
Sbjct: 206 ELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKR 265

Query: 289 ---NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
              ++G+   + +Y  L+ G C   ++ +  L L E M  + LKP   T NALI      
Sbjct: 266 SMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLE-MIDVGLKPEPITYNALIDGFMRQ 324

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
             + +   +  +M + G+  N I ++ LL    +   +E  L ++ +  E GV P+   +
Sbjct: 325 GDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTY 384

Query: 405 KCII-GMC-----SRRYE-----KARTLNEHVLSFN---SGRPQIENKWTSLALMVYREA 450
             +I G C     +R +E     K R L   VL+++   +G  +  N   + A++  RE 
Sbjct: 385 SLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAIL--REM 442

Query: 451 IVAGTIPTVEVVSKVL 466
           ++ G  P   V + ++
Sbjct: 443 VMNGLKPNAVVYTTLM 458


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 203/451 (45%), Gaps = 49/451 (10%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+L  + T+ TFN++++V       + A + +  ++  G K +   Y T+I   +  G +
Sbjct: 219 FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 278

Query: 144 -------DAM-FENVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHI 192
                  DAM  + ++PD   + +LI+   + G ++ A   FD + E+      + P+ +
Sbjct: 279 EGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIG-----LVPNAV 333

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+    N G ++RA      + K  I  +   Y + ++     G    A  +  +M
Sbjct: 334 TYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEM 393

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            KKG+IPD +  + LI+     G  + AF++  E  ++GI    ++Y+SL+   S     
Sbjct: 394 RKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRM 453

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           ++A +L+E +    + P V   NA++   C    + +   +L +M    + P+ +T++ L
Sbjct: 454 KEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTL 513

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
           +    R+  VE   MLL + K  G+ P+ + +  +I    RR +                
Sbjct: 514 MQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGD---------------- 557

Query: 433 PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE---NLGVSA 489
             I++     A  V  E +  G  PT+   + ++ CL      D+ E L++   N G+S 
Sbjct: 558 --IKD-----AFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISP 610

Query: 490 DALKRSNLCSLIDGFGEYDPRAFSLLEEAAS 520
           D    S   SLI+G G  D    +L+E+ AS
Sbjct: 611 DD---STYLSLIEGMGNVD----TLVEDNAS 634



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 46/290 (15%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+     +GR+ E  D++++M +KG++                             
Sbjct: 369 TYNLLVHALFMEGRMGEADDMIKEMRKKGII----------------------------- 399

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--- 143
              P   T+N+L++  +   +++ AF +   +   G++     YT+LI   ++  ++   
Sbjct: 400 ---PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEA 456

Query: 144 DAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
           D +FE      V PD ++FNA++     +G V+RAF +L EM+ +  P  PD +T   LM
Sbjct: 457 DDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVP--PDEVTFNTLM 514

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           +     G+V+ AR +   + +  IK     Y   I+   + GD + A  V D+M   G  
Sbjct: 515 QGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFN 574

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           P  +  +ALI       + + A E+L+E  N+GIS    +Y SL+    N
Sbjct: 575 PTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGN 624



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 2/294 (0%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           +VF+ L+  C +    D AF     M  +   + P   T   ++       +++ A  +Y
Sbjct: 158 IVFDLLVRVCCELRRADEAFKCFYMMKEK--GIVPKIETCNDMLSLFLKLNRMEMAWVLY 215

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             + +  I  T   + I +N   + G  + A      M   G  P+ V  + +I      
Sbjct: 216 AEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSR 275

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G +E A  IL   + +GI     +Y SL+         ++A  L++ M  I L P   T 
Sbjct: 276 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTY 335

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N LI   C+   L +      +M   G+ P+  TY++L+ A   +  +     ++ + ++
Sbjct: 336 NTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRK 395

Query: 395 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYR 448
            G+IP+ + +  +I   SR     +  + H    + G       +TSL  ++ R
Sbjct: 396 KGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSR 449



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 125/282 (44%), Gaps = 21/282 (7%)

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           + + AF+     K +GI   I + + ++         + A  LY  M  +++  TV T N
Sbjct: 172 RADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFRLRISSTVYTFN 231

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            ++  LC   +L K  E +  M+ LG  PN ++Y+ ++     + ++E    +L   +  
Sbjct: 232 IMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVK 291

Query: 396 GVIPNLVMFKCII-GMCSR-RYEKARTLNE---------HVLSFNSGRPQIENKWTSLAL 444
           G+ P+   +  +I GMC   R E+A  L +         + +++N+      NK      
Sbjct: 292 GIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERA 351

Query: 445 MVYREAIV-AGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSL 500
             YR+ +V  G +P+V   + ++  L +       + +++ +   G+  DA+  +    L
Sbjct: 352 FSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYN---IL 408

Query: 501 IDGFGE--YDPRAFSLLEEAASFGIVPC-VSFKEIPVVVDAR 539
           I+G+       +AF L  E  S GI P  V++  +  V+  R
Sbjct: 409 INGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRR 450


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/361 (22%), Positives = 170/361 (47%), Gaps = 22/361 (6%)

Query: 64  HARFF------NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           H++FF      +     +  K  FR ++++ N  + + ++ +S+   ++  +  F     
Sbjct: 71  HSQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVP--- 127

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVV-----FNALITACGQSGAVDR 172
                  ++C  Y       + S      F N    +VV     F  LI  C ++G +++
Sbjct: 128 ------GSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEK 181

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
           +FD+L E+        P+ +    L+  C   G++++A++++  + K  +      YT+ 
Sbjct: 182 SFDLLIELTE--FGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVL 239

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           IN   + G  +    +Y+ M + GV P+    + +++     G+ + AF++  E + +G+
Sbjct: 240 INGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGV 299

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
           S  I++Y++L+G         +A ++ + MKS  + P + T N LI   C   +L K + 
Sbjct: 300 SCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALS 359

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           +  D+KS GL P+ +TY+IL+    RK D      ++ + +E G+ P+ V +  +I   +
Sbjct: 360 LCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFA 419

Query: 413 R 413
           R
Sbjct: 420 R 420



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 157/341 (46%), Gaps = 15/341 (4%)

Query: 83  FFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F ++V N   P  + FN L++    S      +       ++ +  D   +  LI  C +
Sbjct: 117 FNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFN-ENKSKVVLDVYSFGILIKGCCE 175

Query: 140 SGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           +G+++  F+           P+ V++  LI  C + G +++A D+  EM      +  + 
Sbjct: 176 AGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGK--LGLVANE 233

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
            T   L+      G   +  E+Y+ + +  +      Y   +N   + G  + A  V+D+
Sbjct: 234 RTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDE 293

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M ++GV  + V  + LI       K+  A +++ + K+ GI+  +I+Y++L+        
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGK 353

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             KAL L   +KS  L P++ T N L++  C         +++ +M+  G+ P+ +TY+I
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTI 413

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           L+    R D++E  + L    +E G++P++  +  +I G C
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFC 454



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 143/327 (43%), Gaps = 11/327 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEN 149
           +F +L+  C  + + E +F +L  + E G   +  +YTTLI  C K G++    D  FE 
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224

Query: 150 VK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
            K     +   +  LI    ++G   + F++  +M  +   V P+  T   +M      G
Sbjct: 225 GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQED--GVFPNLYTYNCVMNQLCKDG 282

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +   A +V+  + +  +      Y   I    +      A  V D M   G+ P+ +  +
Sbjct: 283 RTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYN 342

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LID     GK+  A  + ++ K++G+S  +++Y+ L+       +   A ++ + M+  
Sbjct: 343 TLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEER 402

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            +KP+  T   LI      D + K +++   M+ LGL P+  TYS+L+     K  +   
Sbjct: 403 GIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEA 462

Query: 386 LMLLSQAKEDGVIPNLVMFKC-IIGMC 411
             L     E    PN V++   I+G C
Sbjct: 463 SRLFKSMVEKNCEPNEVIYNTMILGYC 489



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 80/397 (20%), Positives = 167/397 (42%), Gaps = 23/397 (5%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           ++S+  LI+     G I +  DLL ++   G      +Y       CK  +  K    FF
Sbjct: 163 VYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFF 222

Query: 85  K-----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           +     LV N    T+ +L++    +   +  F++   +QE G+  +   Y  ++    K
Sbjct: 223 EMGKLGLVANE--RTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCK 280

Query: 140 SGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            G+    F+         V  + V +N LI    +   ++ A  V+ +M ++   ++P+ 
Sbjct: 281 DGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSD--GINPNL 338

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           IT   L+      G++ +A  + + +    +  +   Y I ++   + GD   A  +  +
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE 398

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M ++G+ P +V  + LID    +  +E A ++    +  G+   + +YS L+        
Sbjct: 399 MEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ 458

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +A  L++ M     +P     N +I   C      + +++L +M+   L PN  +Y  
Sbjct: 459 MNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRY 518

Query: 372 LL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
           ++ V C+ +   E    L+ +  + G+ P+  +   I
Sbjct: 519 MIEVLCKERKSKEAE-RLVEKMIDSGIDPSTSILSLI 554



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/324 (20%), Positives = 138/324 (42%), Gaps = 17/324 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L + G   +  ++ E M+  G+      Y+     +CK  +  K+AF+ F  +    +
Sbjct: 241 NGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRT-KDAFQVFDEMRERGV 299

Query: 93  S----TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
           S    T+N L+  +C   K +E A +V+  ++  G+  +   Y TLI      GK+    
Sbjct: 300 SCNIVTYNTLIGGLCREMKLNE-ANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKAL 358

Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
               D     + P  V +N L++   + G    A  ++ EM  E   + P  +T   L+ 
Sbjct: 359 SLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEM--EERGIKPSKVTYTILID 416

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
             A +  +++A ++   + +  +      Y++ I+     G    A  ++  M +K   P
Sbjct: 417 TFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEP 476

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +EV  + +I      G    A ++L+E + + ++  + SY  ++      +  ++A  L 
Sbjct: 477 NEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLV 536

Query: 320 EHMKSIKLKPTVSTMNALITALCD 343
           E M    + P+ S ++ +  A  D
Sbjct: 537 EKMIDSGIDPSTSILSLISRAKND 560


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 178/398 (44%), Gaps = 50/398 (12%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  +++YN LIR     G +   +    +MER G L                       
Sbjct: 199 VSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCL----------------------- 235

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                    P + T+N ++      +    AF++LRL+   GL  +   Y  +I    + 
Sbjct: 236 ---------PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCRE 286

Query: 141 GKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G++    E ++        PDRV FN LI      G   +A  + AEM    + + P+ +
Sbjct: 287 GQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVK--NGLSPNVV 344

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+ +   AG ++RA E    +    +      YT  I+  SQ G  + A  +  +M
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404

Query: 253 TKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            + G  P  +  +ALI+  GH   G++E A  +LQE   +G    ++SYS+++      +
Sbjct: 405 VENGFTPTIITYNALIN--GHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQ 462

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             +KA +L   M +  + P V+T ++LI  LC   +L +  ++  +M SLGL P+ +TY+
Sbjct: 463 ELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYT 522

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            L+ A   + D++  L L  +  + G  P++V +  +I
Sbjct: 523 SLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLI 560



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 165/385 (42%), Gaps = 36/385 (9%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-VDR 209
           K    VF+ ++ +C +   +++A  ++    A+ +   P  ++  A++ A     Q V  
Sbjct: 129 KSSSAVFDLVVKSCARVNLINKALSIVNL--AKSYGFMPGVLSYNAILDAVIRTKQSVKI 186

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A  ++K + +  +      Y I I      G+ E     + +M + G +P+ V  + +ID
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIID 246

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                 K+  AF++L+    +G++  +ISY+ ++         ++  E+ E M   +  P
Sbjct: 247 AYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVP 306

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
              T N LI   C+     + + + ++M   GL PN +TY+ L+ +  +  ++   +  L
Sbjct: 307 DRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFL 366

Query: 390 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 449
            Q ++ G+ PN                  RT    +  F+      +  +   A  + +E
Sbjct: 367 DQMRDRGLHPN-----------------GRTYTTLIDGFS------QQGFLKQAYQIMKE 403

Query: 450 AIVAGTIPTVEVVSKVLG--CL--QLPYNADIRERLVENLGVSADALKRSNLCSLIDGF- 504
            +  G  PT+   + ++   C+  ++   + + + ++E  G   D +  S   ++I GF 
Sbjct: 404 MVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIER-GFIPDVVSYS---TIISGFC 459

Query: 505 -GEYDPRAFSLLEEAASFGIVPCVS 528
             +   +AF L  E  + GI P V+
Sbjct: 460 RNQELEKAFQLKVEMVAKGISPDVA 484



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 148/339 (43%), Gaps = 36/339 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPN-- 89
           N + + G ++  ++ L+ M  +GL    + Y     +    Q  +K+A++  K +V N  
Sbjct: 351 NSMCKAGNLNRAMEFLDQMRDRGLHPNGRTY-TTLIDGFSQQGFLKQAYQIMKEMVENGF 409

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            PT+ T+N L++        E A  +L+ + E G   D   Y+T+I+   ++ +++  F+
Sbjct: 410 TPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQ 469

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    + PD   +++LI    +   +    D+  EM +   P  PD +T  +L+ A
Sbjct: 470 LKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLP--PDEVTYTSLINA 527

Query: 201 CANAGQVDRAREVY-KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGV 257
               G +D+A  ++ +MI K     +P++  Y + IN  ++    + A  +   +  +  
Sbjct: 528 YCIEGDLDKALRLHDEMIQK---GFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEES 584

Query: 258 IPDEVFLSALIDFAGH---------------AGKVEAAFEILQEAKNQGISVGIISYSSL 302
           +P+E+  + LID   +                G +  A  +L+    +G  +    Y+ +
Sbjct: 585 VPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVI 644

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           +   S   N +KA  LY+ M      P   T+ AL  +L
Sbjct: 645 IHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSL 683



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/416 (18%), Positives = 164/416 (39%), Gaps = 68/416 (16%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L R+G++ E  ++LE+M ++  +     ++      C      +      ++V N   
Sbjct: 281 NGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLS 340

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P + T+  L++    + +   A + L  +++ GL  + + YTTLI   ++ G +   ++ 
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 150 VK-------------------------------------------PDRVVFNALITACGQ 166
           +K                                           PD V ++ +I+   +
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           +  +++AF +  EM A+   + PD  T  +L++      ++    ++++ +    +    
Sbjct: 461 NQELEKAFQLKVEMVAK--GISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDE 518

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             YT  IN     GD + A  ++D+M +KG  PD V  + LI+      + + A  +L +
Sbjct: 519 VTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLK 578

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
              +      I+Y++L+  C+N + ++ AL                   AL+   C    
Sbjct: 579 LLYEESVPNEITYNTLIDNCNNLE-FKSAL-------------------ALMKGFCMKGL 618

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
           + +   VL  M   G   N   Y++++    +  ++E    L  +    G  P+ V
Sbjct: 619 MNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSV 674



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 118/281 (41%), Gaps = 42/281 (14%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF-FK 85
           +YN LI      GR+ +   LL++M  +G +     Y       C++Q+ +++AF+   +
Sbjct: 415 TYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQE-LEKAFQLKVE 473

Query: 86  LVP---NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEA---GLKADCKLYTTLITTCA 138
           +V    +P ++T++ L+  +C   +  E    V  L QE    GL  D   YT+LI    
Sbjct: 474 MVAKGISPDVATYSSLIQGLCKQRRLGE----VCDLFQEMLSLGLPPDEVTYTSLINAYC 529

Query: 139 KSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
             G +D           +   PD V +N LI    +      A  +L ++  E     P+
Sbjct: 530 IEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYE--ESVPN 587

Query: 191 HITIGALMKACAN---------------AGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
            IT   L+  C N                G ++ A  V + + +   K   EVY + I+ 
Sbjct: 588 EITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHG 647

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
            S+ G+ E A ++Y +M   G  P  V + AL     H GK
Sbjct: 648 HSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGK 688


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 184/402 (45%), Gaps = 26/402 (6%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V    ++Y  +IR    +GR+ + + LL+DM ++G       Y      VCKS     EA
Sbjct: 137 VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKS-SGFGEA 195

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT- 135
                 +      P + T+N++++        + A ++L  +   G + D   YTT++  
Sbjct: 196 MNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKG 255

Query: 136 TCA--KSGKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
            CA  +   V  +F     +   P+ V F+ L+    + G V+RA  VL +M+   H   
Sbjct: 256 LCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQ--HGCT 313

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+      ++ A    G+VD A +    +  Y        YT  +    + G WE A  +
Sbjct: 314 PNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKEL 373

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS 307
             +M +K   P+EV  +  I      G +E A ++++     G SVGI++Y++L+ G C 
Sbjct: 374 LPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCV 433

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NT 366
             +    ALEL+ ++     +P   T   L+T LC  ++L    E+L+ M     CP N 
Sbjct: 434 QGR-VDSALELFNNLPC---EPNTITYTTLLTGLCHAERLDAAAELLAGMIQKD-CPLNA 488

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +T+++L+    +K  VE  + L++Q  E G  PNL+ F  ++
Sbjct: 489 VTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLL 530



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 161/366 (43%), Gaps = 21/366 (5%)

Query: 116 RLVQEA---GLKADCKLYTTLITTCAKSGKVD--------AMFENVKPDRVVFNALITAC 164
           RLV+ +   G   D  L T LI    + G+          A       D   +N L+   
Sbjct: 60  RLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGY 119

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
            + G +D A  ++A M     PV PD  T   +++   + G+V  A  +   + +   + 
Sbjct: 120 CRYGRLDAARRLIASM-----PVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQP 174

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
           +   YT+ +    ++  +  A +V D+M  KG  P+ V  + +I+     G+V+ A EIL
Sbjct: 175 SVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEIL 234

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
               + G    I+SY++++     A+ W     L+  M   K  P   T + L+   C G
Sbjct: 235 NRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRG 294

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
             + + ++VL  M   G  PNT   +I++ A  ++  V+     L+     G  P+ + +
Sbjct: 295 GMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISY 354

Query: 405 KCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVV 462
             ++ G+C + R+E A+ L   ++  N   P  E  + +   ++ ++ ++   I  +E++
Sbjct: 355 TTVLRGLCRAGRWEHAKELLPEMVRKNC--PPNEVTFNTFICILCQKGLIEQAIKLIELM 412

Query: 463 SKVLGC 468
            +  GC
Sbjct: 413 PE-YGC 417



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 90/442 (20%), Positives = 172/442 (38%), Gaps = 76/442 (17%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + R+GR+ +  ++L  +   G       Y      +C +++       F ++V     
Sbjct: 219 NGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCV 278

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   TF+ML+         E A QVL+ + + G   +  L   +I    K G+VD  ++ 
Sbjct: 279 PNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDF 338

Query: 149 ------------------------------------------NVKPDRVVFNALITACGQ 166
                                                     N  P+ V FN  I    Q
Sbjct: 339 LNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQ 398

Query: 167 SGAVDRAFDVLAEM------------NAEVH------------------PVDPDHITIGA 196
            G +++A  ++  M            NA VH                  P +P+ IT   
Sbjct: 399 KGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTT 458

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+    +A ++D A E+   + + +       + + ++   Q G  E A  + + M + G
Sbjct: 459 LLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHG 518

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
             P+ +  + L+D        E A E+L    ++G+S+  I+YSS++   S     ++A+
Sbjct: 519 CTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAI 578

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           ++   ++ + ++P V   N ++ ALC   +  + ++  + M S G  PN  TY IL+   
Sbjct: 579 QMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGL 638

Query: 377 ERKDDVEVGLMLLSQAKEDGVI 398
             +  ++    +LS+    GV+
Sbjct: 639 AHEGLLKEARYVLSELYAKGVL 660



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 120/305 (39%), Gaps = 11/305 (3%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQS 167
           RL+    +  D   YT +I      G+V        D +    +P  V +  L+ A  +S
Sbjct: 130 RLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKS 189

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                A +VL EM A+     P+ +T   ++      G+VD A+E+   +  Y  +    
Sbjct: 190 SGFGEAMNVLDEMRAK--GCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIV 247

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            YT  +        W+    ++ +M  K  +P+EV    L+ F    G VE A ++LQ+ 
Sbjct: 248 SYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQM 307

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
              G +      + ++ A         A +   +M      P   +   ++  LC   + 
Sbjct: 308 SQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRW 367

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
               E+L +M      PN +T++  +    +K  +E  + L+    E G    +V +  +
Sbjct: 368 EHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNAL 427

Query: 408 I-GMC 411
           + G C
Sbjct: 428 VHGFC 432


>gi|145524846|ref|XP_001448245.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124415789|emb|CAK80848.1| unnamed protein product [Paramecium tetraurelia]
          Length = 967

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 158/338 (46%), Gaps = 17/338 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           PT+ T N ++     +   + A++    ++    K D   YTTLI     S  +D     
Sbjct: 300 PTIVTINTMIDQYFKNNQKDKAWKTFENLKLTSTKPDNFTYTTLINGLKNSDNMDLRLAF 359

Query: 145 AMFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            +FE  K    PD++++N L+ AC  +G ++R F +L EM  +   +  D IT   L+K 
Sbjct: 360 QLFEEYKQYNQPDQIIYNCLLDACINAGDLNRGFQLLNEM-KQSQSIQLDEITYNTLIKG 418

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIP 259
           C    +++ A  +++ + +  IK     +   ++ C +      A   +++M K+ G+ P
Sbjct: 419 CGRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDSCVKCNKMNVAWRYFEEMRKQYGIFP 478

Query: 260 DEVFLSALID--FAGHAGKVE--AAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQK 314
           D    S L++     H+ + E   A  +L++ +  G      I Y+SL+ AC      QK
Sbjct: 479 DNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQK 538

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
            ++L++ MK+  ++P+  T   LI A    + L     +  +MK   +  N +TY  L+ 
Sbjct: 539 GMQLFKEMKNKSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQKKIPINDVTYGCLVD 598

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           AC R D ++  L  + Q K   +  N V++  II G C
Sbjct: 599 ACVRNDRLDQALQFIEQMKSQNLPINTVLYTTIIKGFC 636



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 164/368 (44%), Gaps = 29/368 (7%)

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITTC 137
           + F  +K    P    +N L+  C ++ D    FQ+L  + Q   ++ D   Y TLI  C
Sbjct: 360 QLFEEYKQYNQPDQIIYNCLLDACINAGDLNRGFQLLNEMKQSQSIQLDEITYNTLIKGC 419

Query: 138 AKSGKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            +  +++   ++FE      +KP+R+ FN+L+ +C +   ++ A+    EM  + + + P
Sbjct: 420 GRKKRLNEAISLFEEMKQIGIKPNRISFNSLLDSCVKCNKMNVAWRYFEEMRKQ-YGIFP 478

Query: 190 DHITIGALMKAC----ANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEF 244
           D+ T   L+       +N  ++ RA  + + I +    K    +Y   I+ C +  + + 
Sbjct: 479 DNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQK 538

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
              ++ +M  K + P  V    LI   G    +  AF + +E K + I +  ++Y  L+ 
Sbjct: 539 GMQLFKEMKNKSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQKKIPINDVTYGCLVD 598

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK-SLGLC 363
           AC       +AL+  E MKS  L         +I   C  +Q  + M+  S MK +    
Sbjct: 599 ACVRNDRLDQALQFIEQMKSQNLPINTVLYTTIIKGFCKLNQTEEAMKYFSLMKQNQRTY 658

Query: 364 PNTITYSILLVACERKDDVEVGLM-----LLSQAKEDGVIPNLVMFKCII-GMCSRRYEK 417
           PN ITY+ LL        V+ GLM     L  +  E  + P+L+ F  ++ G C R    
Sbjct: 659 PNLITYNSLLDGL-----VKNGLMNQADKLFQELVESTIKPDLITFSTLLKGHCRRG--N 711

Query: 418 ARTLNEHV 425
            + LNE V
Sbjct: 712 MKRLNETV 719



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 145/318 (45%), Gaps = 22/318 (6%)

Query: 131 TTLITTCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDR--AFDVLAEM 180
            T+I    K+ + D     FEN+K     PD   +  LI     S  +D   AF +  E 
Sbjct: 306 NTMIDQYFKNNQKDKAWKTFENLKLTSTKPDNFTYTTLINGLKNSDNMDLRLAFQLFEEY 365

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQT 239
                P   D I    L+ AC NAG ++R  ++  +M    +I+     Y   I  C + 
Sbjct: 366 KQYNQP---DQIIYNCLLDACINAGDLNRGFQLLNEMKQSQSIQLDEITYNTLIKGCGRK 422

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIIS 298
                A S++++M + G+ P+ +  ++L+D      K+  A+   +E + Q GI     +
Sbjct: 423 KRLNEAISLFEEMKQIGIKPNRISFNSLLDSCVKCNKMNVAWRYFEEMRKQYGIFPDNFT 482

Query: 299 YSSLMGAC----SNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEV 353
           YS L+       SN     +A+ L E ++   + KP     N+LI A    +++ K M++
Sbjct: 483 YSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMQL 542

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             +MK+  + P+++TY IL+ A  + +D+     +  + K+  +  N V + C++  C R
Sbjct: 543 FKEMKNKSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQKKIPINDVTYGCLVDACVR 602

Query: 414 --RYEKARTLNEHVLSFN 429
             R ++A    E + S N
Sbjct: 603 NDRLDQALQFIEQMKSQN 620



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/375 (18%), Positives = 153/375 (40%), Gaps = 21/375 (5%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           I  G ++    LL +M++   + +D++ +      C  +K + EA   F+ +      P 
Sbjct: 384 INAGDLNRGFQLLNEMKQSQSIQLDEITYNTLIKGCGRKKRLNEAISLFEEMKQIGIKPN 443

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSG-------KV 143
             +FN L+  C        A++    + ++ G+  D   Y+ L+     +        + 
Sbjct: 444 RISFNSLLDSCVKCNKMNVAWRYFEEMRKQYGIFPDNFTYSILVNGIKTNHSNRDELLRA 503

Query: 144 DAMFENV------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
             + E +      KPD +++N+LI AC +   + +   +  EM  +   ++P  +T G L
Sbjct: 504 ITLLEQIQETGQFKPDEILYNSLIDACVKFNEIQKGMQLFKEMKNK--SIEPSSVTYGIL 561

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +KA      ++ A  +++ + +  I      Y   ++ C +    + A    + M  + +
Sbjct: 562 IKAYGKMNDLNGAFRMFEEMKQKKIPINDVTYGCLVDACVRNDRLDQALQFIEQMKSQNL 621

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKNWQKAL 316
             + V  + +I       + E A +     K NQ     +I+Y+SL+          +A 
Sbjct: 622 PINTVLYTTIIKGFCKLNQTEEAMKYFSLMKQNQRTYPNLITYNSLLDGLVKNGLMNQAD 681

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +L++ +    +KP + T + L+   C    + +  E +  M    + P+     ++L +C
Sbjct: 682 KLFQELVESTIKPDLITFSTLLKGHCRRGNMKRLNETVQTMLHYQINPDESLLQLILESC 741

Query: 377 ERKDDVEVGLMLLSQ 391
             +     G+ +  Q
Sbjct: 742 LNQQQYHNGVQIYDQ 756



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/351 (20%), Positives = 146/351 (41%), Gaps = 61/351 (17%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+ R++E I L E+M++ G+   +++      + C     +  A+R+F+ 
Sbjct: 411 TYNTLIKGCGRKKRLNEAISLFEEMKQIGI-KPNRISFNSLLDSCVKCNKMNVAWRYFEE 469

Query: 87  VPN-----PTLSTFNMLMSVCASSKDSEG----AFQVLRLVQEAG-LKADCKLYTTLITT 136
           +       P   T+++L++   ++  +      A  +L  +QE G  K D  LY +LI  
Sbjct: 470 MRKQYGIFPDNFTYSILVNGIKTNHSNRDELLRAITLLEQIQETGQFKPDEILYNSLIDA 529

Query: 137 CAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
           C K  ++     +F+ +K     P  V +  LI A G+   ++ AF +  EM  +  P++
Sbjct: 530 CVKFNEIQKGMQLFKEMKNKSIEPSSVTYGILIKAYGKMNDLNGAFRMFEEMKQKKIPIN 589

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC-- 246
              +T G L+ AC    ++D+A +  + +   N+     +YT  I    +    E A   
Sbjct: 590 --DVTYGCLVDACVRNDRLDQALQFIEQMKSQNLPINTVLYTTIIKGFCKLNQTEEAMKY 647

Query: 247 ------------------SVYDDMTKKGVI----------------PDEVFLSALIDFAG 272
                             S+ D + K G++                PD +  S L+    
Sbjct: 648 FSLMKQNQRTYPNLITYNSLLDGLVKNGLMNQADKLFQELVESTIKPDLITFSTLLKGHC 707

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
             G ++   E +Q   +  I+        ++ +C N + +   +++Y+  +
Sbjct: 708 RRGNMKRLNETVQTMLHYQINPDESLLQLILESCLNQQQYHNGVQIYDQFQ 758


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 197/432 (45%), Gaps = 51/432 (11%)

Query: 73  SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           S  ++  A RFF  + +    P + T+N+L+         + A  VLR ++ AG      
Sbjct: 134 SDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAG------ 187

Query: 129 LYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
                                  P+ V +N L+ A  ++G VDRA + L +M  E   + 
Sbjct: 188 ---------------------CDPNAVTYNTLVAAFCRAGEVDRA-ERLVDMMRE-GGLK 224

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ +T  +++     AG+++ AR+V+  + K  +      Y   +    + G    A SV
Sbjct: 225 PNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSV 284

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           + +MT+KG++PD V  ++LI     AG +E A  +++E + +G+ +  I++++L+     
Sbjct: 285 FAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCK 344

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                 AL     M+  +++P+V   NALI   C   ++ +  E++ +M++ G+ P+ +T
Sbjct: 345 KGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVT 404

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF 428
           YS +L A  +  D      L  Q  E+GV+P+ + +  +I +     E+ R  + HVL  
Sbjct: 405 YSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLC---EEKRLGDAHVLFK 461

Query: 429 NS---GRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPY 473
           N    G    E  +TSL            AL ++ E + AG +P V   S ++  L    
Sbjct: 462 NMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSA 521

Query: 474 NADIRERLVENL 485
                +RL+  L
Sbjct: 522 RTKEAQRLLFKL 533



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/297 (24%), Positives = 133/297 (44%), Gaps = 13/297 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFKLVPN 89
           N + + GR+ +   + ++M ++GL      Y+      CK   S +A+       +    
Sbjct: 235 NGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIM 294

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----A 145
           P + TF  L+ V   + + E A  ++R ++E GL+ +   +T LI    K G +D    A
Sbjct: 295 PDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLA 354

Query: 146 MFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           + E     ++P  V +NALI      G +D A +++ EM A+   V PD +T   ++ A 
Sbjct: 355 VREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAK--GVKPDVVTYSTILSAY 412

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G    A ++ + + +  +      Y+  I    +      A  ++ +M   G+ PDE
Sbjct: 413 CKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDE 472

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           V  ++LID     G VE A  +  E    G+   +++YS L+   S +   ++A  L
Sbjct: 473 VTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRL 529



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 122/289 (42%), Gaps = 34/289 (11%)

Query: 32  YNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-L 86
           YN LI      GR+ E  +L+ +ME KG+      Y       CK+      AF+  + +
Sbjct: 370 YNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDT-HSAFQLNQQM 428

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + N   P   T++ L+ V    K    A  + + +   GL+ D   YT+LI    K G V
Sbjct: 429 LENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNV 488

Query: 144 -------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                  D M +  V PD V ++ LI    +S     A  +L ++  E  PV P +I   
Sbjct: 489 ERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHE-EPV-PANIKYD 546

Query: 196 ALMKACANA---------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
           ALM+ C NA               G ++ A +VY+ I   N      VY++ I+   + G
Sbjct: 547 ALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVLIHGHCREG 606

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           +   A S +  M + G  P+     +LI      G V  A +++Q+  N
Sbjct: 607 NVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQLLN 655


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 203/451 (45%), Gaps = 49/451 (10%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+L  + T+ TFN++++V       + A + +  ++  G K +   Y T+I   +  G +
Sbjct: 241 FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNI 300

Query: 144 -------DAM-FENVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHI 192
                  DAM  + ++PD   + +LI+   + G ++ A   FD + E+      + P+ +
Sbjct: 301 EGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIG-----LVPNAV 355

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+    N G ++RA      + K  I  +   Y + ++     G    A  +  +M
Sbjct: 356 TYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEM 415

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            KKG+IPD +  + LI+     G  + AF++  E  ++GI    ++Y+SL+   S     
Sbjct: 416 RKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRM 475

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           ++A +L+E +    + P V   NA++   C    + +   +L +M    + P+ +T++ L
Sbjct: 476 KEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTL 535

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
           +    R+  VE   MLL + K  G+ P+ + +  +I    RR +                
Sbjct: 536 MQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGD---------------- 579

Query: 433 PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE---NLGVSA 489
             I++     A  V  E +  G  PT+   + ++ CL      D+ E L++   N G+S 
Sbjct: 580 --IKD-----AFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISP 632

Query: 490 DALKRSNLCSLIDGFGEYDPRAFSLLEEAAS 520
           D    S   SLI+G G  D    +L+E+ AS
Sbjct: 633 DD---STYLSLIEGMGNVD----TLVEDNAS 656



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 46/290 (15%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+     +GR+ E  D++++M +KG++                             
Sbjct: 391 TYNLLVHALFMEGRMGEADDMIKEMRKKGII----------------------------- 421

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--- 143
              P   T+N+L++  +   +++ AF +   +   G++     YT+LI   ++  ++   
Sbjct: 422 ---PDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEA 478

Query: 144 DAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
           D +FE      V PD ++FNA++     +G V+RAF +L EM+ +  P  PD +T   LM
Sbjct: 479 DDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVP--PDEVTFNTLM 536

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           +     G+V+ AR +   + +  IK     Y   I+   + GD + A  V D+M   G  
Sbjct: 537 QGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFN 596

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           P  +  +ALI       + + A E+L+E  N+GIS    +Y SL+    N
Sbjct: 597 PTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGN 646



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 120/294 (40%), Gaps = 2/294 (0%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           +VF+ L+  C +    D AF     M  +   + P   T   ++       +++ A  +Y
Sbjct: 180 IVFDLLVRVCCELRRADEAFKCFYMMKEK--GIVPKIETCNDMLSLFLKLNRMEMAWVLY 237

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             + +  I  T   + I +N   + G  + A      M   G  P+ V  + +I      
Sbjct: 238 AEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSR 297

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G +E A  IL   + +GI     +Y SL+         ++A  L++ M  I L P   T 
Sbjct: 298 GNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTY 357

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N LI   C+   L +      +M   G+ P+  TY++L+ A   +  +     ++ + ++
Sbjct: 358 NTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRK 417

Query: 395 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYR 448
            G+IP+ + +  +I   SR     +  + H    + G       +TSL  ++ R
Sbjct: 418 KGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSR 471



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 136/313 (43%), Gaps = 24/313 (7%)

Query: 248 VYDDMT---KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           ++D++T    +  +   +    L+       + + AF+     K +GI   I + + ++ 
Sbjct: 163 LFDELTLSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLS 222

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                   + A  LY  M  +++  TV T N ++  LC   +L K  E +  M+ LG  P
Sbjct: 223 LFLKLNRMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKP 282

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLN 422
           N ++Y+ ++     + ++E    +L   +  G+ P+   +  +I GMC   R E+A  L 
Sbjct: 283 NVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLF 342

Query: 423 E---------HVLSFNSGRPQIENKWTSLALMVYREAIV-AGTIPTVEVVSKVLGCLQLP 472
           +         + +++N+      NK        YR+ +V  G +P+V   + ++  L + 
Sbjct: 343 DKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFME 402

Query: 473 YNADIRERLVENL---GVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPC- 526
                 + +++ +   G+  DA+  +    LI+G+       +AF L  E  S GI P  
Sbjct: 403 GRMGEADDMIKEMRKKGIIPDAITYN---ILINGYSRCGNAKKAFDLHNEMLSKGIEPTH 459

Query: 527 VSFKEIPVVVDAR 539
           V++  +  V+  R
Sbjct: 460 VTYTSLIYVLSRR 472


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 173/358 (48%), Gaps = 20/358 (5%)

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
             RFFK +      P + T+N ++      K ++ AF  LR +   GL+ +   +  +I 
Sbjct: 2   GLRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIIN 61

Query: 136 TCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              + G++    E           PD V +N L+    + G   +A  + AEM    + +
Sbjct: 62  GLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVR--NGL 119

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P+ +T  +L+ +   AG ++RA E +  +H   +      YT  IN  +Q G  + A  
Sbjct: 120 SPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYR 179

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
           V ++MT+ G IP  V  +ALI+  GH   G++E A  +LQ+   +G+   ++SYS+++  
Sbjct: 180 VLNEMTRSGFIPSIVTYNALIN--GHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISG 237

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
            +  +   +A ++   M    + P   T ++LI  LC+  +L +  ++  +M ++ L P+
Sbjct: 238 FARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPD 297

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 421
             TY+ L+ A  ++ D+   L L  +  + G +P+ V +  +I   ++  R ++AR L
Sbjct: 298 EFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRL 355



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 168/378 (44%), Gaps = 17/378 (4%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMS-V 101
             ++MER G L     Y+      CK ++   EAF F + +      P L TFNM+++ +
Sbjct: 5   FFKEMERNGCLPNVVTYNTMIDGYCKLKRT-DEAFGFLRSMGLKGLEPNLITFNMIINGL 63

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MFEN-VKPD 153
           C   +  E + +VL  +   G   D   Y TL+    K G           M  N + P+
Sbjct: 64  CRDGRLKETS-EVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPN 122

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
            V + +LI +  ++G ++RA +   +M+  V  + P+  T   ++   A  G +D A  V
Sbjct: 123 VVTYTSLINSMCKAGNLNRAMEFFDQMH--VRGLCPNERTYTTIINGFAQQGLLDEAYRV 180

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
              + +     +   Y   IN     G  E A  +  DM  KGV+PD V  S +I     
Sbjct: 181 LNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFAR 240

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
             +++ AF++  E   + +    ++YSSL+      +   +A ++++ M +IKL P   T
Sbjct: 241 NQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFT 300

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
              LI A C    L K + +  +M   G  P+ +TY++L+    ++   +    LL +  
Sbjct: 301 YTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLF 360

Query: 394 EDGVIPNLVMFKCIIGMC 411
            D  IP+ V +  +I  C
Sbjct: 361 YDDSIPSAVTYNTLIENC 378



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/404 (20%), Positives = 162/404 (40%), Gaps = 63/404 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L R GR+ E  ++L +M RKG +  +  Y+      CK     +      ++V N   
Sbjct: 61  NGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLS 120

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P + T+  L++    + +   A +    +   GL  + + YTT+I   A+ G +D  +  
Sbjct: 121 PNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRV 180

Query: 148 -----------------------------------------ENVKPDRVVFNALITACGQ 166
                                                    + V PD V ++ +I+   +
Sbjct: 181 LNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFAR 240

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           +  +DRAF +  EM  +   V PD +T  +L++      ++  A ++++ +    +    
Sbjct: 241 NQELDRAFQMKVEMIGK--SVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDE 298

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             YT  IN   + GD   A  ++D+M +KG +PD V  + LI+      + + A  +L +
Sbjct: 299 FTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLK 358

Query: 287 AKNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPTV 331
                     ++Y++L+  C N +                  +A +++E M +   KP  
Sbjct: 359 LFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNE 418

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           +  N +I   C    + K  ++  +M  +   P+T+T   L+ A
Sbjct: 419 AIYNVIIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKA 462


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/398 (25%), Positives = 178/398 (44%), Gaps = 50/398 (12%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  +++YN LIR     G +   +    +MER G L                       
Sbjct: 199 VSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCL----------------------- 235

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                    P + T+N ++      +    AF++LRL+   GL  +   Y  +I    + 
Sbjct: 236 ---------PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCRE 286

Query: 141 GKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G++    E ++        PDRV FN LI      G   +A  + AEM    + + P+ +
Sbjct: 287 GQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVK--NGLSPNVV 344

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+ +   AG ++RA E    +    +      YT  I+  SQ G  + A  +  +M
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404

Query: 253 TKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            + G  P  +  +ALI+  GH   G++E A  +LQE   +G    ++SYS+++      +
Sbjct: 405 VENGFTPTIITYNALIN--GHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQ 462

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             +KA +L   M +  + P V+T ++LI  LC   +L +  ++  +M SLGL P+ +TY+
Sbjct: 463 ELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYT 522

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            L+ A   + D++  L L  +  + G  P++V +  +I
Sbjct: 523 SLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLI 560



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 165/385 (42%), Gaps = 36/385 (9%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-VDR 209
           K    VF+ ++ +C +   +++A  ++    A+ +   P  ++  A++ A     Q V  
Sbjct: 129 KSSSAVFDLVVKSCARVNLINKALSIVNL--AKSYGFMPGVLSYNAILDAVIRTKQSVKI 186

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A  ++K + +  +      Y I I      G+ E     + +M + G +P+ V  + +ID
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIID 246

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                 K+  AF++L+    +G++  +ISY+ ++         ++  E+ E M   +  P
Sbjct: 247 AYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVP 306

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
              T N LI   C+     + + + ++M   GL PN +TY+ L+ +  +  ++   +  L
Sbjct: 307 DRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFL 366

Query: 390 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 449
            Q ++ G+ PN                  RT    +  F+      +  +   A  + +E
Sbjct: 367 DQMRDRGLHPN-----------------GRTYTTLIDGFS------QQGFLKQAYQIMKE 403

Query: 450 AIVAGTIPTVEVVSKVLG--CL--QLPYNADIRERLVENLGVSADALKRSNLCSLIDGF- 504
            +  G  PT+   + ++   C+  ++   + + + ++E  G   D +  S   ++I GF 
Sbjct: 404 MVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIER-GFIPDVVSYS---TIISGFC 459

Query: 505 -GEYDPRAFSLLEEAASFGIVPCVS 528
             +   +AF L  E  + GI P V+
Sbjct: 460 RNQELEKAFQLKVEMVAKGISPDVA 484



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/339 (21%), Positives = 148/339 (43%), Gaps = 36/339 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPN-- 89
           N + + G ++  ++ L+ M  +GL    + Y     +    Q  +K+A++  K +V N  
Sbjct: 351 NSMCKAGNLNRAMEFLDQMRDRGLHPNGRTY-TTLIDGFSQQGFLKQAYQIMKEMVENGF 409

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            PT+ T+N L++        E A  +L+ + E G   D   Y+T+I+   ++ +++  F+
Sbjct: 410 TPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQ 469

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    + PD   +++LI    +   +    D+  EM +   P  PD +T  +L+ A
Sbjct: 470 LKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLP--PDEVTYTSLINA 527

Query: 201 CANAGQVDRAREVY-KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGV 257
               G +D+A  ++ +MI K     +P++  Y + IN  ++    + A  +   +  +  
Sbjct: 528 YCIEGDLDKALRLHDEMIQK---GFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEES 584

Query: 258 IPDEVFLSALIDFAGH---------------AGKVEAAFEILQEAKNQGISVGIISYSSL 302
           +P+E+  + LID   +                G +  A  +L+    +G  +    Y+ +
Sbjct: 585 VPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVI 644

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           +   S   N +KA  LY+ M      P   T+ AL  +L
Sbjct: 645 IHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSL 683



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 77/416 (18%), Positives = 164/416 (39%), Gaps = 68/416 (16%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L R+G++ E  ++LE+M ++  +     ++      C      +      ++V N   
Sbjct: 281 NGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLS 340

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P + T+  L++    + +   A + L  +++ GL  + + YTTLI   ++ G +   ++ 
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 150 VK-------------------------------------------PDRVVFNALITACGQ 166
           +K                                           PD V ++ +I+   +
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           +  +++AF +  EM A+   + PD  T  +L++      ++    ++++ +    +    
Sbjct: 461 NQELEKAFQLKVEMVAK--GISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDE 518

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             YT  IN     GD + A  ++D+M +KG  PD V  + LI+      + + A  +L +
Sbjct: 519 VTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLK 578

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
              +      I+Y++L+  C+N + ++ AL                   AL+   C    
Sbjct: 579 LLYEESVPNEITYNTLIDNCNNLE-FKSAL-------------------ALMKGFCMKGL 618

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
           + +   VL  M   G   N   Y++++    +  ++E    L  +    G  P+ V
Sbjct: 619 MNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSV 674



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 118/281 (41%), Gaps = 42/281 (14%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF-FK 85
           +YN LI      GR+ +   LL++M  +G +     Y       C++Q+ +++AF+   +
Sbjct: 415 TYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQE-LEKAFQLKVE 473

Query: 86  LVP---NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEA---GLKADCKLYTTLITTCA 138
           +V    +P ++T++ L+  +C   +  E    V  L QE    GL  D   YT+LI    
Sbjct: 474 MVAKGISPDVATYSSLIQGLCKQRRLGE----VCDLFQEMLSLGLPPDEVTYTSLINAYC 529

Query: 139 KSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
             G +D           +   PD V +N LI    +      A  +L ++  E     P+
Sbjct: 530 IEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYE--ESVPN 587

Query: 191 HITIGALMKACAN---------------AGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
            IT   L+  C N                G ++ A  V + + +   K   EVY + I+ 
Sbjct: 588 EITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHG 647

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
            S+ G+ E A ++Y +M   G  P  V + AL     H GK
Sbjct: 648 HSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGK 688


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/439 (23%), Positives = 202/439 (46%), Gaps = 45/439 (10%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFR 82
           +V + LH +++++ QG                   MD+V +    N +CK  +  + A +
Sbjct: 95  EVKKSLHFHDKVVAQG-----------------FQMDQVSYGILLNGLCKIGET-RCAIK 136

Query: 83  FFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             + + +    P +  ++ ++      K  + A+ +   +   G+  D   YTTLI    
Sbjct: 137 LLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFC 196

Query: 139 KSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
            +G++        + + +N+ P+   +N LI    + G V  + ++LA M  +   V PD
Sbjct: 197 LAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKK--GVKPD 254

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +    LM      G+V +A++++ ++ +  +      Y I IN   +    + A ++  
Sbjct: 255 VVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLR 314

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNA 309
           +M  K +IPD V  S+LID     G++    ++ +E  ++G    +++Y+SL+ G C N 
Sbjct: 315 EMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKN- 373

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
           +N  KA+ L+  MK   ++P   T  ALI  LC G +L K   +   +   G C +  TY
Sbjct: 374 QNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTY 433

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNEHVLS 427
           ++++    ++   +  L + S+ +++G IPN V F+ II     + E  KA  L   +++
Sbjct: 434 TVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIA 493

Query: 428 --------FNSGRPQIENK 438
                   F+S R  + NK
Sbjct: 494 KGLLPFRNFHSERSSVTNK 512



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 125/284 (44%), Gaps = 4/284 (1%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + + PD V  + LI      G +  +F VL ++    +   P+ I +  LMK     G+V
Sbjct: 39  KGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGY--QPNTIILNTLMKGLCLKGEV 96

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
            ++   +  +     +     Y I +N   + G+   A  +   +  +   PD V  S +
Sbjct: 97  KKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTI 156

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ID       V+ A+++  E   +GI   +I+Y++L+     A    +A  L   M    +
Sbjct: 157 IDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNI 216

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P + T N LI  LC   ++ ++  +L+ M   G+ P+ + YSIL+       +V+    
Sbjct: 217 NPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQ 276

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFN 429
           +     + GV P++  +  II G+C  +R ++A  L   +L  N
Sbjct: 277 IFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKN 320



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 76/180 (42%), Gaps = 17/180 (9%)

Query: 18  HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           H N   D        + L + GRI+  +DL ++M  +G       Y++    +CK+Q   
Sbjct: 318 HKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLD 377

Query: 78  KEAFRFFKLVP---NPTLSTFNMLMS-VCASS--KDSEGAFQVLRLVQEAGLKADCKLYT 131
           K    F K+      P   T+  L+  +C     K  +  FQ L LV+  G   D   YT
Sbjct: 378 KAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHL-LVK--GYCIDVWTYT 434

Query: 132 TLITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
            +I+   K G  D   AM   ++     P+ V F  +I +  +    D+A  +L EM A+
Sbjct: 435 VMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAK 494


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 203/439 (46%), Gaps = 45/439 (10%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFR 82
           +V + LH +++++ QG                   M++V +    N +CK  +  + A +
Sbjct: 217 EVKKSLHFHDKVVAQG-----------------FQMNQVSYGTLLNGLCKIGET-RCAIK 258

Query: 83  FFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             +++ +    P +  +N ++      K    A+     +   G+  D   Y+TLI    
Sbjct: 259 LLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFC 318

Query: 139 KSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
            +G++   F        +N+ PD   +  LI A  + G +  A ++L  M  E   V P+
Sbjct: 319 LAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKE--GVKPN 376

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +T   LM      G+V  A++++  + +  +  +   Y I IN   +    + A ++  
Sbjct: 377 VVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLR 436

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNA 309
           +M  K V+P+ V  ++LID    +G++ +A ++++E  ++G    +I+Y+SL+ G C N 
Sbjct: 437 EMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKN- 495

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
           +N  KA+ L+  MK   ++P   T  ALI  LC G +L    ++   +   G C +  TY
Sbjct: 496 QNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTY 555

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART---LNE--- 423
           ++++    ++  ++  L + S+ +++G IP+ V F+ II     + E  +    L+E   
Sbjct: 556 NVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIA 615

Query: 424 ----HVLSFNSGRPQIENK 438
               H  +F+  R  + NK
Sbjct: 616 KGLLHFRNFHGERSPVTNK 634



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/382 (23%), Positives = 161/382 (42%), Gaps = 47/382 (12%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P L T ++L++          +F VL  + + G + +  + TTL+      G+V      
Sbjct: 165 PDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHF 224

Query: 146 -------------------------------------MFEN--VKPDRVVFNALITACGQ 166
                                                M E+   +PD V++N +I    +
Sbjct: 225 HDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCK 284

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
              V+ A+D   EMN+    + PD IT   L+     AGQ+  A  +   +   NI    
Sbjct: 285 DKLVNEAYDFYTEMNSR--GIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDV 342

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             YTI I+   + G  + A ++   MTK+GV P+ V  S L+D     G+V  A +I   
Sbjct: 343 YTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHA 402

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
                ++  + SY+ ++      K+  +A+ L   M    + P   T N+LI  LC   +
Sbjct: 403 MVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGR 462

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +   ++++ ++   G   + ITY+ LL    +  +++  + L  + KE G+ PN   +  
Sbjct: 463 ITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTA 522

Query: 407 II-GMC-SRRYEKARTLNEHVL 426
           +I G+C   R + A+ L +H+L
Sbjct: 523 LIDGLCKGARLKNAQKLFQHIL 544



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 106/230 (46%), Gaps = 1/230 (0%)

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
           EV  ++PD +T+  L+    + GQ+  +  V   I K   +    + T  +      G+ 
Sbjct: 159 EVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEV 218

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           + +   +D +  +G   ++V    L++     G+   A ++L+  +++     ++ Y+++
Sbjct: 219 KKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTI 278

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +      K   +A + Y  M S  + P V T + LI   C   QL     +L++M    +
Sbjct: 279 IDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNI 338

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            P+  TY+IL+ A  ++  ++    LL    ++GV PN+V +  ++ G C
Sbjct: 339 NPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYC 388



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 91/220 (41%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P  I  G ++ +         A  + K +    I+      +I INC    G   F+ SV
Sbjct: 130 PSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSV 189

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
              + K G  P+ + L+ L+      G+V+ +     +   QG  +  +SY +L+     
Sbjct: 190 LGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCK 249

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
               + A++L   ++    +P V   N +I  LC    + +  +  ++M S G+ P+ IT
Sbjct: 250 IGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVIT 309

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           YS L+        +     LL++     + P++  +  +I
Sbjct: 310 YSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILI 349


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 176/431 (40%), Gaps = 56/431 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           L + GRI   + + + ME +GL   + VY A    +CK++K   A++   +  K    P 
Sbjct: 136 LSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 195

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD------- 144
             T+N+L+     S D E A      + EAG K D   Y  LI+   K+G  D       
Sbjct: 196 TITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLA 255

Query: 145 --------------------------------AMFENV-----KPDRVVFNALITACGQS 167
                                           A+ E +      P    +NAL+    + 
Sbjct: 256 QETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKM 315

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--- 224
           G ++ A D+L ++    +   PD +T  +L+      G+  R+ E YK+  +  ++G   
Sbjct: 316 GRLEEAIDLLRKIVD--NGCTPDVVTYTSLIDG---LGKEKRSFEAYKLFKEMALRGLAL 370

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
               YT  I    QTG    A SVY  MT  G +PD V LS +ID    AG++ AA  I 
Sbjct: 371 DTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIF 430

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
           +  + +G++   + YS+L+     A+    ALE+   MK     P   T N LI  LC  
Sbjct: 431 KSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKS 490

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
             +        +M   G  P+  TY+IL+    +  + +    +           N+V +
Sbjct: 491 GDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTY 550

Query: 405 KCII-GMCSRR 414
             +I G+C RR
Sbjct: 551 GALISGLCKRR 561



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 163/347 (46%), Gaps = 16/347 (4%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---PTLSTF 95
           +I E + L+E +   G       Y+A    +CK  + ++EA     K+V N   P + T+
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGR-LEEAIDLLRKIVDNGCTPDVVTY 59

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFENVK- 151
             L+      K S  A+++ + +   GL  D   YT LI    ++GK+    ++++ +  
Sbjct: 60  TSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTS 119

Query: 152 ----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
               PD V  + +I    ++G +  A  +   M  E   + P+ +   AL+     A ++
Sbjct: 120 HGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSM--EARGLAPNEVVYSALIHGLCKARKM 177

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A E+   + K         Y + I+   ++GD E A + +D+M + G  PD    + L
Sbjct: 178 DCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNIL 237

Query: 268 IDFAGHAGKVEAAFEIL-QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           I     AG  +AA   L QE    G ++ I +Y++++   +  K  ++A+ L E + +  
Sbjct: 238 ISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANG 297

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             PT++T NAL+  LC   +L + +++L  +   G  P+ +TY+ L+
Sbjct: 298 CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLI 344



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 162/382 (42%), Gaps = 42/382 (10%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P    +NAL+    + G ++ A D+L ++    +   PD +T  +L+      G+  R+ 
Sbjct: 19  PTIATYNALLNGLCKMGRLEEAIDLLRKIVD--NGCTPDVVTYTSLIDG---LGKEKRSF 73

Query: 212 EVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
           E YK+  +  ++G       YT  I    QTG    A SVY  MT  G +PD V LS +I
Sbjct: 74  EAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMI 133

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           D    AG++ AA  I +  + +G++   + YS+L+     A+    ALE+   MK     
Sbjct: 134 DGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCT 193

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P   T N LI  LC    +        +M   G  P+  TY+IL+    +  + +     
Sbjct: 194 PDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHS 253

Query: 389 LSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVY 447
           L+Q    +G   ++  +  I+   ++                       NK    A+ + 
Sbjct: 254 LAQETTINGCTIDIHTYTAIVDWLAK-----------------------NKKIEEAVALM 290

Query: 448 REAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDG 503
            +    G  PT+   + +L  L    +L    D+  ++V+N G + D +  +   SLIDG
Sbjct: 291 EKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDN-GCTPDVVTYT---SLIDG 346

Query: 504 FGEYDP--RAFSLLEEAASFGI 523
            G+      A+ L +E A  G+
Sbjct: 347 LGKEKRSFEAYKLFKEMALRGL 368



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 103/223 (46%), Gaps = 5/223 (2%)

Query: 209 RAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +  E   ++ K    G TP +  Y   +N   + G  E A  +   +   G  PD V  +
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           +LID  G   +   A+++ +E   +G+++  + Y++L+          +A  +Y+ M S 
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
              P V T++ +I  L    ++   + +   M++ GL PN + YS L+    +   ++  
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
           L +L+Q K+    P+ + +  +I G+C S   E AR   + +L
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEML 223


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 176/395 (44%), Gaps = 24/395 (6%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHAR-----FFNVCKSQKA--IKEAFRFFKL 86
           RL+R G + +    LE M  +G  D+  +         F  + K++KA  + E       
Sbjct: 123 RLVRNGELEDGFKFLESMVYRG--DIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 180

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           VP+  + T+N+L+S    S + + A QVL  +  A    D   Y T++ T   SGK+   
Sbjct: 181 VPD--VITYNVLISGYCKSGEIDNALQVLDRMNVA---PDVVTYNTILRTLCDSGKLKQA 235

Query: 147 FENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            E +         PD + +  LI A  +   V +A  +L EM  +     PD +T   L+
Sbjct: 236 MEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK--GSKPDVVTYNVLI 293

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                 G++D A +    +  Y  +     + I +     TG W  A  +  DM +KG  
Sbjct: 294 NGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCS 353

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P  V  + LI+F    G +  A +IL++    G +   +SY+ L+      K   +A+E 
Sbjct: 354 PSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 413

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            + M S    P + T N L+TALC   ++   +E+L+ + S G  P  ITY+ ++    +
Sbjct: 414 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 473

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
               E  + LL + +  G+ P+++ +  ++   SR
Sbjct: 474 VGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSR 508



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 175/392 (44%), Gaps = 21/392 (5%)

Query: 24  DVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           +V+  + +YN ++R     G++ + +++L+   +K        Y       CK +  + +
Sbjct: 211 NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCK-ESGVGQ 269

Query: 80  AFRFFKLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           A +    + N    P + T+N+L++ +C   +  E A + L  +   G + +   +  ++
Sbjct: 270 AMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDE-AIKFLNNMPSYGCQPNVITHNIIL 328

Query: 135 TTCAKSGK--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
            +   +G+         D + +   P  V FN LI    + G + RA D+L +M   +H 
Sbjct: 329 RSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM--PMHG 386

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             P+ ++   L+       ++DRA E   ++           Y   +    + G  + A 
Sbjct: 387 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 446

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            + + ++ KG  P  +  + +ID     GK E A ++L E + +G+   II+YSSL+   
Sbjct: 447 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 506

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
           S      +A++ +  ++ + ++P   T N+++  LC   Q  + ++ L+ M S    P  
Sbjct: 507 SREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 566

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
            TY+IL+     +   +  L LL++    G++
Sbjct: 567 ATYTILIEGIAYEGLAKEALDLLNELCSRGLV 598


>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 617

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 171/379 (45%), Gaps = 17/379 (4%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DA 145
            P    F+ L+S  A +   + A ++L   Q  GL       T LI+    +G+V   +A
Sbjct: 225 EPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEA 284

Query: 146 MF------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +F        +KP    +NAL+    +  ++  A  VL EM+     V PD  T   L+ 
Sbjct: 285 LFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQ--CGVAPDEATYSLLVD 342

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A   AG+ + AR + K +    +K +  V++  +      GDW+ A +V  +M   GV P
Sbjct: 343 AYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRP 402

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D  F + +ID  G    +  A +   + + +GI   ++++++L+ A        +A EL+
Sbjct: 403 DRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELF 462

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E M+     P  +T N +I  L + +       +LS+MK  GL PN ITY+ L+    R 
Sbjct: 463 EEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRS 522

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS-GRPQIENK 438
              +  +  +   K DG+ P+  M+  ++   ++     R L   V+++ +  +  I  +
Sbjct: 523 GRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQ-----RGLRPDVITYTTLMKALIRVE 577

Query: 439 WTSLALMVYREAIVAGTIP 457
                 ++Y E I +G  P
Sbjct: 578 QFDKVPVIYEEMITSGCAP 596



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           D+ +  + PD    S LI     A   +AA E+L  A+  G++    + ++L+ A   A 
Sbjct: 218 DLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAG 277

Query: 311 NWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
              +A  L+ E   + ++KP     NAL+        L    +VL +M   G+ P+  TY
Sbjct: 278 RVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATY 337

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           S+L+ A  R    E   +LL + + DGV P+  +F  I+ 
Sbjct: 338 SLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILA 377


>gi|302833221|ref|XP_002948174.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
 gi|300266394|gb|EFJ50581.1| hypothetical protein VOLCADRAFT_116752 [Volvox carteri f.
           nagariensis]
          Length = 1001

 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 140/324 (43%), Gaps = 47/324 (14%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           ++   +S+C   +D + A ++++ ++   ++ +   YT L+  C K GK+    +     
Sbjct: 146 SYTATISLCIHGQDVDRALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSM 205

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANA 204
              N  P+ V +N L+   G+ G  +RA  VL  M  E V PV                 
Sbjct: 206 RAVNCMPNVVTYNTLVDVYGKLGQWERAIHVLDVMKHEGVEPV----------------- 248

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
                       +  YN         IA N C+Q  +   A +VY  +   G  P+    
Sbjct: 249 ------------LRTYN------TLIIACNMCNQPRE---ALAVYQRLLSDGFTPNSTTY 287

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           +ALI   G   ++  A E+ QE   Q +   +I+YSSL+ AC  A  W+ AL ++  M+ 
Sbjct: 288 NALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALRIFNEMQQ 347

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
            K  P   T N+L+TA   G Q  K  EV   M + G  P+ +TY+ L+ A ER    + 
Sbjct: 348 DKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGCTPDVVTYTALISAYERGGQWQK 407

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII 408
            L    +    G  P+ +++  II
Sbjct: 408 ALQAFHKMCVQGCKPDAIVYNAII 431



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 155 VVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDR 209
           V+F AL     + G   RA   FD L   N E  P+    D  +  A +  C +   VDR
Sbjct: 104 VIFRALHHDLSRLGKDRRAMELFDWLRSAN-ERSPLRALCDVYSYTATISLCIHGQDVDR 162

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A E+ + +   NI+     YT  +N C + G    A  +Y+ M     +P+ V  + L+D
Sbjct: 163 ALELMQEMRSRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMPNVVTYNTLVD 222

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
             G  G+ E A  +L   K++G+   + +Y++L+ AC+     ++AL +Y+ + S    P
Sbjct: 223 VYGKLGQWERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGFTP 282

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
             +T NALI+A     QL K +EV  +M    +  + ITYS L+ ACE+    E  L + 
Sbjct: 283 NSTTYNALISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALRIF 342

Query: 390 SQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 425
           ++ ++D  +PN V +  ++  C++  ++EKA  + E +
Sbjct: 343 NEMQQDKCVPNTVTYNSLVTACAQGGQWEKAAEVFEQM 380



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 127/291 (43%), Gaps = 26/291 (8%)

Query: 22  AHDVSEQLHSYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           + ++   +H+Y  L    I+ G++   +D+   M     +  + V +    +V       
Sbjct: 172 SRNIERNVHTYTALMNVCIKCGKLPLALDIYNSMRAVNCMP-NVVTYNTLVDVYGKLGQW 230

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           + A     ++ +    P L T+N L+  C        A  V + +   G   +   Y  L
Sbjct: 231 ERAIHVLDVMKHEGVEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGFTPNSTTYNAL 290

Query: 134 ITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I+   K+ ++    E        N+    + +++LI+AC ++G  + A  +  EM  +  
Sbjct: 291 ISAYGKTTQLGKALEVYQEMLRQNMDRSVITYSSLISACEKAGQWETALRIFNEMQQD-- 348

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWE 243
              P+ +T  +L+ ACA  GQ ++A EV++ ++ +    TP+V  YT  I+   + G W+
Sbjct: 349 KCVPNTVTYNSLVTACAQGGQWEKAAEVFEQMNAHGC--TPDVVTYTALISAYERGGQWQ 406

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA---AFEILQEAKNQG 291
            A   +  M  +G  PD +  +A+ID     G + A   A ++   A  QG
Sbjct: 407 KALQAFHKMCVQGCKPDAIVYNAIIDTLWETGIIWAQGKALQLFMTAVQQG 457


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 176/395 (44%), Gaps = 24/395 (6%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHAR-----FFNVCKSQKA--IKEAFRFFKL 86
           RL+R G + +    LE M  +G  D+  +         F  + K++KA  + E       
Sbjct: 66  RLVRNGELEDGFKFLESMVYRG--DIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 123

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           VP+  + T+N+L+S    S + + A QVL  +  A    D   Y T++ T   SGK+   
Sbjct: 124 VPD--VITYNVLISGYCKSGEIDNALQVLDRMNVA---PDVVTYNTILRTLCDSGKLKQA 178

Query: 147 FENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            E +         PD + +  LI A  +   V +A  +L EM  +     PD +T   L+
Sbjct: 179 MEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK--GSKPDVVTYNVLI 236

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                 G++D A +    +  Y  +     + I +     TG W  A  +  DM +KG  
Sbjct: 237 NGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCS 296

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P  V  + LI+F    G +  A +IL++    G +   +SY+ L+      K   +A+E 
Sbjct: 297 PSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 356

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            + M S    P + T N L+TALC   ++   +E+L+ + S G  P  ITY+ ++    +
Sbjct: 357 LDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSK 416

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
               E  + LL + +  G+ P+++ +  ++   SR
Sbjct: 417 VGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSR 451



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 175/392 (44%), Gaps = 21/392 (5%)

Query: 24  DVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           +V+  + +YN ++R     G++ + +++L+   +K        Y       CK +  + +
Sbjct: 154 NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCK-ESGVGQ 212

Query: 80  AFRFFKLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           A +    + N    P + T+N+L++ +C   +  E A + L  +   G + +   +  ++
Sbjct: 213 AMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDE-AIKFLNNMPSYGCQPNVITHNIIL 271

Query: 135 TTCAKSGK--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
            +   +G+         D + +   P  V FN LI    + G + RA D+L +M   +H 
Sbjct: 272 RSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKM--PMHG 329

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             P+ ++   L+       ++DRA E   ++           Y   +    + G  + A 
Sbjct: 330 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV 389

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            + + ++ KG  P  +  + +ID     GK E A ++L E + +G+   II+YSSL+   
Sbjct: 390 EILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 449

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
           S      +A++ +  ++ + ++P   T N+++  LC   Q  + ++ L+ M S    P  
Sbjct: 450 SREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTE 509

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
            TY+IL+     +   +  L LL++    G++
Sbjct: 510 ATYTILIEGIAYEGLAKEALDLLNELCSRGLV 541


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 159/347 (45%), Gaps = 14/347 (4%)

Query: 70   VCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            +CK +K       F K        PTL  +N+L+       + E A+ +   ++ AG   
Sbjct: 764  LCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAP 823

Query: 126  DCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVL 177
            D   Y +LI    KSGK++ +F+          KP+ + +N +I+   +S  +D+A D+ 
Sbjct: 824  DTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLY 883

Query: 178  AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
               N       P   T G L+     +G++D A E++  +  Y  +    +Y I +N   
Sbjct: 884  --YNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYG 941

Query: 238  QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
            + G  + AC  +  M K+G+ PD    + L+D    AG+V+ A    ++ K  G+   ++
Sbjct: 942  KLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLV 1001

Query: 298  SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
            +Y+ ++     ++  ++AL L+  M++  + P + T N+LI  L     + +  ++  ++
Sbjct: 1002 AYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEEL 1061

Query: 358  KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            + +GL PN  TY+ L+       + E+   +  +    G  PN   F
Sbjct: 1062 QFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTF 1108



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/447 (21%), Positives = 196/447 (43%), Gaps = 47/447 (10%)

Query: 27  EQLHSYNRLIRQG-------------------RISECIDLLEDMERKGLLDMDKVY-HAR 66
           E L  Y R++ +G                    I   + LLE+ME  GL     +Y +  
Sbjct: 212 EALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGL--RPNIYTYTI 269

Query: 67  FFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
              V      I EA+R  K + +    P + T+ +L+    +++  + A  +   ++ + 
Sbjct: 270 CIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSS 329

Query: 123 LKADCKLYTTLI---TTCAKSGKVDAMFENVK-----PDRVVFNALITACGQSGAVDRAF 174
            K D   Y TL+   + C    KV+ ++  ++     PD V F  L+ A  ++G ++ AF
Sbjct: 330 HKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAF 389

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
           D+L  M  +   V P+  T   L+     A ++D A +++  +    ++ T   Y + I+
Sbjct: 390 DLLDTMRKQ--GVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLID 447

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
              ++G    A   ++ M  +G+ P+ V  +A +      G++  A  +  E K+ G++ 
Sbjct: 448 YHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAP 507

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
             ++Y+ +M   S      +A++L   M  ++ +P V  +N+LI  L    ++ +  ++ 
Sbjct: 508 DSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLIDTLYKAGRVEEAWQMF 567

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI------- 407
             M+ + L P  +TY+ILL    ++  ++  + L       G  PN + F  +       
Sbjct: 568 CRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKN 627

Query: 408 --IGMCSRRYEKARTLN--EHVLSFNS 430
             + +  + + K  T+N    VL+FN+
Sbjct: 628 DEVDLALKMFYKMTTMNCRPDVLTFNT 654



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 181/397 (45%), Gaps = 15/397 (3%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           +V   L  +  L  +G + +    LE M   G +     Y+     + +S    KEA   
Sbjct: 158 NVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQS-GFCKEALEV 216

Query: 84  FKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           ++ + +    P+L TF+ LM      ++ +    +L  ++  GL+ +   YT  I    +
Sbjct: 217 YRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGR 276

Query: 140 SGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            GK+D  +  +K        PD V +  LI A   +  +D A  +  +M +  H   PD 
Sbjct: 277 DGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHK--PDK 334

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T   L+   ++ G +D+  +++  +           +TI +N   + G    A  + D 
Sbjct: 335 VTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDT 394

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M K+GV+P+    + LI     A +++ A ++    ++ G+     +Y  L+     + +
Sbjct: 395 MRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGH 454

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             KALE +E MK+  + P +   NA + +L +  +L +   + +++KS GL P+++TY++
Sbjct: 455 PGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSGLAPDSVTYNM 514

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ++    +   V+  + LLS+  +    P++++   +I
Sbjct: 515 MMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLI 551



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 212/467 (45%), Gaps = 41/467 (8%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
           P + TF +L+ ++C + + +E AF +L  +++ G+  +   Y TLI+   ++ ++D    
Sbjct: 367 PDVVTFTILVNALCKAGRINE-AFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALD 425

Query: 146 MFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +F N     V+P    +  LI   G+SG   +A +   +M A    + P+ +   A + +
Sbjct: 426 LFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKAR--GIAPNIVACNASLYS 483

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A  G++  A+ ++  +    +      Y + + C S+ G  + A  +  +M+K    PD
Sbjct: 484 LAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPD 543

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            + +++LID    AG+VE A+++    +   ++  +++Y+ L+         QKA++L+E
Sbjct: 544 VIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFE 603

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M      P   T N L+  LC  D++   +++   M ++   P+ +T++ ++    +++
Sbjct: 604 SMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQN 663

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC-SRRYEKARTLNEHVLSFNSGRPQIENKW 439
            ++  + L  Q K+     ++ +   + G+  S + E A  + E    +  G     + W
Sbjct: 664 QIKNAIWLFHQMKKLLRPDHVTLCTLLPGVIKSGQIEDAFRITEDFF-YQVGSNIDRSFW 722

Query: 440 TSLALMVYRE-----AIVAGT--------------IPTVEVVSKVLGCLQLPYNADIRER 480
             +   +  E     AI+ G               IP ++V+ K     +     ++  +
Sbjct: 723 EDVMGGILTEAGTEKAILFGERLVCRAICKDDSVLIPIIKVLCK---HKKTSVARNVFVK 779

Query: 481 LVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
             + LGV    LK  NL  LIDGF E      A++L EE  S G  P
Sbjct: 780 FTKELGVKP-TLKVYNL--LIDGFLEVHNVEVAWNLFEEMKSAGCAP 823



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/349 (21%), Positives = 152/349 (43%), Gaps = 16/349 (4%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           YA DV       N L + GRI+E  DLL+ M ++G+L     Y+     + ++ + + +A
Sbjct: 365 YAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANR-LDDA 423

Query: 81  FRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---CKLYTTL 133
              F     L   PT  T+ +L+     S     A +    ++  G+  +   C      
Sbjct: 424 LDLFSNMESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYS 483

Query: 134 ITTCAKSGKVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
           +    + G+  AMF  +K     PD V +N ++    + G VD A  +L+EM+      +
Sbjct: 484 LAEMGRLGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKV--QCE 541

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD I I +L+     AG+V+ A +++  + + N+  T   Y I +    + G  + A  +
Sbjct: 542 PDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQL 601

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           ++ M   G  P+ +  + L+D      +V+ A ++  +         ++++++++     
Sbjct: 602 FESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIK 661

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
               + A+ L+  MK + L+P   T+  L+  +    Q+     +  D 
Sbjct: 662 QNQIKNAIWLFHQMKKL-LRPDHVTLCTLLPGVIKSGQIEDAFRITEDF 709



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 92/456 (20%), Positives = 188/456 (41%), Gaps = 62/456 (13%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPNPTLS 93
            +I+ G+I +   + ED   +   ++D+ +         ++   ++A  F  +LV      
Sbjct: 693  VIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAICK 752

Query: 94   TFNMLMSV----CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
              ++L+ +    C   K S      ++  +E G+K   K+Y  LI    +   V+    +
Sbjct: 753  DDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNL 812

Query: 147  FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            FE +K     PD   +N+LI A G+SG ++  FD+  EM        P+ IT   ++   
Sbjct: 813  FEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEM--LTRGCKPNTITYNMVISNL 870

Query: 202  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              + ++D+A ++Y  +   +   TP  +   I+   ++G  + A  ++D M   G  P+ 
Sbjct: 871  VKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNS 930

Query: 262  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
               + L++  G  G V+ A E  +    +GI                             
Sbjct: 931  AIYNILVNGYGKLGHVDTACEFFKRMVKEGI----------------------------- 961

Query: 322  MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
                  +P + +   L+  LC   ++   +     +K  GL P+ + Y++++    R   
Sbjct: 962  ------RPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQR 1015

Query: 382  VEVGLMLLSQAKEDGVIPNLVMFKC------IIGM---CSRRYEKAR--TLNEHVLSFNS 430
             E  L L  + +  G++P+L  +        I+GM     + YE+ +   L  +V ++N+
Sbjct: 1016 TEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNA 1075

Query: 431  G-RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 465
              R    +  + LA  +Y++ +V G  P     +++
Sbjct: 1076 LIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQL 1111



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/460 (21%), Positives = 191/460 (41%), Gaps = 40/460 (8%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRF 83
            +YN L+    ++G+I + + L E M   G       ++     +CK+ +   A+K  ++ 
Sbjct: 581  TYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFNTLLDCLCKNDEVDLALKMFYKM 640

Query: 84   FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
              +   P + TFN ++         + A  +   +++  L+ D     TL+    KSG++
Sbjct: 641  TTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL-LRPDHVTLCTLLPGVIKSGQI 699

Query: 144  DAMFENVKP---------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
            +  F   +          DR  +  ++         ++A  +L         +  D   +
Sbjct: 700  EDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKA--ILFGERLVCRAICKDDSVL 757

Query: 195  GALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              ++K      +   AR V+ K   +  +K T +VY + I+   +  + E A +++++M 
Sbjct: 758  IPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMK 817

Query: 254  KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
              G  PD    ++LID  G +GK+   F++  E   +G     I+Y+ ++     +    
Sbjct: 818  SAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLD 877

Query: 314  KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            KA++LY ++ S    PT  T   LI  L    +L    E+   M   G  PN+  Y+IL+
Sbjct: 878  KAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILV 937

Query: 374  VACERKDDVEVGLMLLSQAKEDGVIPNLVMFK------CIIGMCS---RRYEKART--LN 422
                +   V+       +  ++G+ P+L  +       CI G        +EK +   L+
Sbjct: 938  NGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLD 997

Query: 423  EHVLSFN-----SGRPQIENKWTSLALMVYREAIVAGTIP 457
              ++++N      GR Q     T  AL ++ E    G +P
Sbjct: 998  PDLVAYNLMINGLGRSQ----RTEEALSLFHEMQNRGIVP 1033



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 134/319 (42%), Gaps = 46/319 (14%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
            +YN LI    + G+I+E  DL ++M  +G               CK              
Sbjct: 827  TYNSLIDAHGKSGKINELFDLYDEMLTRG---------------CK-------------- 857

Query: 87   VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-- 144
               P   T+NM++S    S   + A  +   +           +  LI    KSG++D  
Sbjct: 858  ---PNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDA 914

Query: 145  -AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
              MF+ +     +P+  ++N L+   G+ G VD A +    M  E   + PD  +   L+
Sbjct: 915  HEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKE--GIRPDLKSYTILV 972

Query: 199  KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                 AG+VD A   ++ + +  +      Y + IN   ++   E A S++ +M  +G++
Sbjct: 973  DILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIV 1032

Query: 259  PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
            PD    ++LI   G  G +E A +I +E +  G+   + +Y++L+   + + N + A  +
Sbjct: 1033 PDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGI 1092

Query: 319  YEHMKSIKLKPTVSTMNAL 337
            Y+ M      P   T   L
Sbjct: 1093 YKKMMVGGCDPNTGTFAQL 1111


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 154/331 (46%), Gaps = 16/331 (4%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
           +PT+  F  L+ +  +S + E A  V + + + G + D   Y  LI    +SG++D+   
Sbjct: 62  SPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAME 121

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGAL 197
           MF  +K     PD   +  L+ A G++G V  A   FD + E       + P+  T   L
Sbjct: 122 MFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLE-----RGLTPNIPTYNLL 176

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           M A    GQ+D A  ++  + +   + +   Y I ++     G    A  ++  MT  G 
Sbjct: 177 MDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGC 236

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD    S L++  G +G+VE A ++ +E  ++G++V +++Y+SL+   + A N  +  +
Sbjct: 237 SPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWK 296

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L + M      P   + N ++ AL   ++     EV + M   G  P+ I+Y+IL+ +  
Sbjct: 297 LMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYA 356

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           R  D      +L +  E G IP    +  +I
Sbjct: 357 RFGDAAQARQMLEEMVEAGFIPETKTYNSLI 387



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 167/365 (45%), Gaps = 17/365 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + GR+ E     + M  +GL      Y+    +  +    +  A   F  +     
Sbjct: 143 NALGKAGRVQEARSFFDAMLERGLTPNIPTYNL-LMDAFRKVGQLDMALGLFAEMKRRGF 201

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P++ T+N+L+    S+     A ++   +   G   D   Y+TL+    KSG+V+   +
Sbjct: 202 QPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHK 261

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    V  D V +N+L+    ++G +DR + ++ EM+ +     PD  +   +M A
Sbjct: 262 VFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRK--GFHPDAFSFNTIMDA 319

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              A + D AREV+  + +   K     Y I I+  ++ GD   A  + ++M + G IP+
Sbjct: 320 LGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPE 379

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               ++LI +    G+V+ AF +L+E +  G    +++Y+ LM         Q+A  L++
Sbjct: 380 TKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQ 439

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERK 379
            MK   ++P   +    I  L   D+L + + +  DMK++G CP +   Y IL+ A  R 
Sbjct: 440 QMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVG-CPVDKAMYRILIRAAHRA 498

Query: 380 DDVEV 384
            D E+
Sbjct: 499 GDTEL 503



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 155/336 (46%), Gaps = 16/336 (4%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAMF 147
           +N+L+     S   + A ++ R ++  G + D   Y  L+    K+G+V       DAM 
Sbjct: 103 YNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAML 162

Query: 148 E-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
           E  + P+   +N L+ A  + G +D A  + AEM        P  +T   L+ A  +AG+
Sbjct: 163 ERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKR--RGFQPSVVTYNILLDALCSAGR 220

Query: 207 VDRAREVYKMIHKYNIKG-TPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           V  AR   K+ HK    G +P+ YT +  +N   ++G  E A  V+ +M  +GV  D V 
Sbjct: 221 VGAAR---KLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVN 277

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            ++L+     AG ++  +++++E   +G      S++++M A   A     A E++  M 
Sbjct: 278 YNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMV 337

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
               KP + + N LI +        +  ++L +M   G  P T TY+ L+        V+
Sbjct: 338 ESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVD 397

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
               +L + +  G  P++V +  ++ M  +R E  R
Sbjct: 398 EAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQR 433



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 174/402 (43%), Gaps = 25/402 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LIR     G++   +++  +M+ KG  + D+  +    N       ++EA  FF  
Sbjct: 102 AYNVLIRYFGRSGQLDSAMEMFREMKIKGS-EPDEYTYGFLVNALGKAGRVQEARSFFDA 160

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+N+LM         + A  +   ++  G +     Y  L+     +G+
Sbjct: 161 MLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGR 220

Query: 143 VDA---MFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           V A   +F  +      PD   ++ L+   G+SG V+ A  V  EM      V  D +  
Sbjct: 221 VGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVD--RGVAVDLVNY 278

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTI--AINCCSQTGDWEFACSVYDD 251
            +L+   A AG +DR   V+K++ + + KG  P+ ++    ++   +    + A  V+  
Sbjct: 279 NSLLATLAKAGNMDR---VWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFAR 335

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M + G  PD +  + LID     G    A ++L+E    G      +Y+SL+   +    
Sbjct: 336 MVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQ 395

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +A  + E M++   +P V T N L+  L    +  +   +   MK  G+ P+T++Y++
Sbjct: 396 VDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAV 455

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            +      D ++  L+L    K  G   +  M++ +I    R
Sbjct: 456 RIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHR 497



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 120/264 (45%), Gaps = 4/264 (1%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           ++P+ +V   LITA G+      AFD+  +  AE     P       L+    N+G+ +R
Sbjct: 28  LRPNTLV--KLITAYGRGNKSGDAFDLFNQ--AESFACSPTVHAFTKLIDILVNSGEFER 83

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A  VYK + +   +     Y + I    ++G  + A  ++ +M  KG  PDE     L++
Sbjct: 84  AELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVN 143

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
             G AG+V+ A         +G++  I +Y+ LM A         AL L+  MK    +P
Sbjct: 144 ALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQP 203

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
           +V T N L+ ALC   ++    ++   M   G  P++ TYS L+    +   VE    + 
Sbjct: 204 SVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVF 263

Query: 390 SQAKEDGVIPNLVMFKCIIGMCSR 413
            +  + GV  +LV +  ++   ++
Sbjct: 264 REMVDRGVAVDLVNYNSLLATLAK 287



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 147/360 (40%), Gaps = 48/360 (13%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  + +YN L+    + G++   + L  +M+R+G       Y+     +C + +     
Sbjct: 166 LTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAAR 225

Query: 81  FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             F K+  +   P   T++ L++    S   E A +V R + + G+  D   Y +L+ T 
Sbjct: 226 KLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATL 285

Query: 138 AKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHP-- 186
           AK+G +D +++ +K        PD   FN ++ A G++   D A +V A M  +   P  
Sbjct: 286 AKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDL 345

Query: 187 ------VD------------------------PDHITIGALMKACANAGQVDRAREVYKM 216
                 +D                        P+  T  +L+   A  GQVD A  V + 
Sbjct: 346 ISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEE 405

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           +     +     Y   ++   + G+ + A  ++  M  KGV PD +  +  ID      +
Sbjct: 406 METAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDR 465

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           ++ A  + ++ K  G  V    Y  L+ A   A + +   +L    + + ++  +++  A
Sbjct: 466 LDEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGDTELEAQLKHESQFMPVESRLTSQKA 525


>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 905

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 130/256 (50%), Gaps = 5/256 (1%)

Query: 174 FDVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
           F+ L  ++A  HP+    D  T  A++  C     VDRA ++ K +   NI+     YT 
Sbjct: 192 FEWLRNLDAN-HPLASLCDVYTYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTA 250

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            +N C + G+   A   Y+ M + G  P+ V  + LID  G  G  E   ++L   K +G
Sbjct: 251 LMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEG 310

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           +   + +Y++L+ AC+     ++A+ +Y+ M      P  +T NALI+A     QL K M
Sbjct: 311 VEPVLRTYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVM 370

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           EV  +M   G   + ITYS L+ ACE+    E+ L L ++   +G IPN V +  +I  C
Sbjct: 371 EVFQEMVHKGCERSVITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITAC 430

Query: 412 SR--RYEKARTLNEHV 425
           ++  ++EKA  + E +
Sbjct: 431 AQGAQWEKASEVFEQM 446



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 126/291 (43%), Gaps = 10/291 (3%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFENVKPDRV--------VFNALITACGQSGAVDRAFDVL 177
           D   YT +I+ C     VD   +  K  RV         + AL+  C + G    A D  
Sbjct: 209 DVYTYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTY 268

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
             M  +     P+ +T   L+      G  ++  +V  ++    ++     Y   I  C+
Sbjct: 269 NHMRQD--GACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIACN 326

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
             G    A +VY  M  +G  P+    +ALI   G AG+++   E+ QE  ++G    +I
Sbjct: 327 MCGQPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVI 386

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +YSSL+ AC  A  W+ ALEL+  M      P   T N+LITA   G Q  K  EV   M
Sbjct: 387 TYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQM 446

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +  G  P+ +T++ L+ + E+       L    Q +     P+ ++F  II
Sbjct: 447 QKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAII 497



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 132/278 (47%), Gaps = 18/278 (6%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG------KVDAMF 147
           T+  LM+VC    +   A      +++ G   +   Y TLI    K G      KV  + 
Sbjct: 247 TYTALMNVCIKCGNCPLALDTYNHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLM 306

Query: 148 --ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             E V+P    +N LI AC   G    A  V   M  E +   P+  T  AL+ A   AG
Sbjct: 307 KTEGVEPVLRTYNTLIIACNMCGQPREAMAVYKRMLDEGY--SPNATTYNALISAYGKAG 364

Query: 206 QVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           Q+D+  EV++ M+HK   + +   Y+  I+ C + G WE A  ++++M  +G IP+ V  
Sbjct: 365 QLDKVMEVFQEMVHK-GCERSVITYSSLISACEKAGQWELALELFNEMAGEGCIPNTVTY 423

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++LI       + E A E+ ++ +  G +  ++++++L+ +      W++AL  YE M+ 
Sbjct: 424 NSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRL 483

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
            + KP     NA+I      D L +T  + +  K+L L
Sbjct: 484 QRCKPDAIVFNAII------DTLWETGVIWAQRKALAL 515



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 136/319 (42%), Gaps = 23/319 (7%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK-- 151
           T+  ++S+C   +D + A  + + ++   ++ +   YT L+  C K G      +     
Sbjct: 212 TYTAMISMCIYQQDVDRAMDLAKEMRVRNIERNVHTYTALMNVCIKCGNCPLALDTYNHM 271

Query: 152 ------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                 P+ V +N LI   G+ G  ++   VL  M  E   V+P   T   L+ AC   G
Sbjct: 272 RQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTE--GVEPVLRTYNTLIIACNMCG 329

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           Q   A  VYK +           Y   I+   + G  +    V+ +M  KG     +  S
Sbjct: 330 QPREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYS 389

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           +LI     AG+ E A E+  E   +G     ++Y+SL+ AC+    W+KA E++E M+  
Sbjct: 390 SLISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKG 449

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL--------VACE 377
              P V T  ALI++   G Q  + +     M+     P+ I ++ ++        +  +
Sbjct: 450 GCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTLWETGVIWAQ 509

Query: 378 RKDDVEVGLMLLSQAKEDG 396
           RK      L L  QA EDG
Sbjct: 510 RK-----ALALFQQAVEDG 523



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 125/289 (43%), Gaps = 26/289 (8%)

Query: 24  DVSEQLHSYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           ++   +H+Y  L    I+ G     +D    M + G    + V +    +V       ++
Sbjct: 240 NIERNVHTYTALMNVCIKCGNCPLALDTYNHMRQDGACP-NVVTYNTLIDVYGKMGLWEQ 298

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
             +   L+      P L T+N L+  C        A  V + + + G   +   Y  LI+
Sbjct: 299 GIKVLTLMKTEGVEPVLRTYNTLIIACNMCGQPREAMAVYKRMLDEGYSPNATTYNALIS 358

Query: 136 TCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K+G++D + E          +   + +++LI+AC ++G  + A ++  EM  E    
Sbjct: 359 AYGKAGQLDKVMEVFQEMVHKGCERSVITYSSLISACEKAGQWELALELFNEMAGE--GC 416

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFA 245
            P+ +T  +L+ ACA   Q ++A EV++ + K     TP+V  +T  I+   + G W  A
Sbjct: 417 IPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGC--TPDVVTFTALISSYEKGGQWRRA 474

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA---AFEILQEAKNQG 291
              Y+ M  +   PD +  +A+ID     G + A   A  + Q+A   G
Sbjct: 475 LGAYEQMRLQRCKPDAIVFNAIIDTLWETGVIWAQRKALALFQQAVEDG 523


>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
 gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
          Length = 668

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 157/343 (45%), Gaps = 11/343 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DA 145
            P    F+ L+S  A +   + A ++L   Q  GL       T LI+    +G+V   +A
Sbjct: 225 EPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGSAGRVAEAEA 284

Query: 146 MF------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +F        +KP    +NAL+    + G++  A  VL EM+     V PD  T   L+ 
Sbjct: 285 LFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQ--CGVAPDEATYSLLVD 342

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A   AG+ + AR + K +    +K +  V++  +      GDW+ A +V  +M   GV P
Sbjct: 343 AYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRP 402

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D  F + +ID  G    +  A +     + + I   ++++++L+ A        +A+EL+
Sbjct: 403 DRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELF 462

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E M+     P  +T N +I  L + ++      +LS+MK  GL PN ITY+ L+    R 
Sbjct: 463 EEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRS 522

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
              +  +  +   K DG+ P+  M+  ++   ++R      LN
Sbjct: 523 GRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALN 565



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 145/306 (47%), Gaps = 13/306 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P  +T+++L+     +   E A  +L+ ++  G+K    +++ ++      G     F  
Sbjct: 332 PDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAV 391

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V+PDR  +N +I   G+   +  A D    M  E   ++PD +T   L+ A 
Sbjct: 392 LREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREE--EIEPDVVTWNTLIDAH 449

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+ DRA E+++ + + N       Y I IN   +   WE   ++  +M ++G++P+ 
Sbjct: 450 CKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNI 509

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + L+D  G +G+ + A + ++  K  G+      Y +L+ A +       AL + + 
Sbjct: 510 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 569

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACER 378
           MK+  L+ ++  +N+LI A  +  ++ +   VL  MK  GL P+ ITY+ L   L+  E+
Sbjct: 570 MKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQ 629

Query: 379 KDDVEV 384
            D V V
Sbjct: 630 FDKVPV 635



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/349 (20%), Positives = 152/349 (43%), Gaps = 12/349 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM-- 146
            P    +N L+         + A QVL  + + G+  D   Y+ L+    ++G+ ++   
Sbjct: 296 KPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARI 355

Query: 147 ------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                  + VKP   VF+ ++      G   +AF VL EM A    V PD      ++  
Sbjct: 356 LLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQAS--GVRPDRHFYNVMIDT 413

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                 +  A + +  + +  I+     +   I+   + G  + A  ++++M +    P 
Sbjct: 414 FGKYNCLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPG 473

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + +I+  G   + E    +L E K QG+   II+Y++L+     +  +++A++  E
Sbjct: 474 TTTYNIMINLLGEQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIE 533

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            MK+  LKP+ +  +AL+ A          + V+  MK+ GL  + +  + L+ A     
Sbjct: 534 AMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDR 593

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLS 427
            V     +L   KE+G+ P+++ +  ++    R  +++K   + E +++
Sbjct: 594 RVVEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMIT 642



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 122/294 (41%), Gaps = 41/294 (13%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVD 144
            P+   F+ +++      D + AF VLR +Q +G++ D   Y  +I T  K       +D
Sbjct: 366 KPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMD 425

Query: 145 AM----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-------------- 186
           A      E ++PD V +N LI A  + G  DRA ++  EM     P              
Sbjct: 426 AFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYNIMINLLG 485

Query: 187 -------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                              + P+ IT   L+     +G+   A +  + +    +K +P 
Sbjct: 486 EQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPT 545

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           +Y   +N  +Q G  + A +V   M   G+    + L++LI+  G   +V  AF +LQ  
Sbjct: 546 MYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFM 605

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           K  G+   +I+Y++LM A    + + K   +YE M +    P       L +AL
Sbjct: 606 KENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSAL 659



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 1/160 (0%)

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           D+ +  + PD    S LI     A   +AA E+L  A+  G++    + ++L+ A  +A 
Sbjct: 218 DLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGSAG 277

Query: 311 NWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
              +A  L+ E   + ++KP     NAL+        L    +VL +M   G+ P+  TY
Sbjct: 278 RVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIGSLKNAEQVLDEMSQCGVAPDEATY 337

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           S+L+ A  R    E   +LL + + DGV P+  +F  I+ 
Sbjct: 338 SLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILA 377


>gi|384253088|gb|EIE26563.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 908

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 185/421 (43%), Gaps = 45/421 (10%)

Query: 35  LIRQGRISECIDLLED-MERKGLLDMDKVYHARFFNVCKSQKA--IKEAFRFF----KLV 87
           L R G +   I L E+ M+  G+      ++A    V +S+++  +  A  +F    +L 
Sbjct: 71  LSRCGDVEGAIALFEERMQSLGIAPETATFNALIRAVGRSRRSDLVGRAAAYFSRLCELG 130

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQV------LRLVQEAGLKADCKLYTTLITTCAKS- 140
             P   TF+ L +     K  +GAF +      L  V   G++ + ++  T + +   + 
Sbjct: 131 LQPDKYTFSALFNTAYHCKLLDGAFLLQASLVALSEVPYFGVRLNSRIMFTFLQSAWGAH 190

Query: 141 ----------GKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
                      +V AM   ++PDR V+ AL+    + G  + A DV   M  +     PD
Sbjct: 191 FTREQVVRVFAEVAAMRAQMQPDRSVYAALLIFAERQGVPEHALDVWEAMQQDT--TTPD 248

Query: 191 HITIGALMKACAN---------AGQVDRAREVYKMIH----KYNIKGTPE---VYTIAIN 234
                AL  ACA+         AG+ +    + +  H    + N++   +    Y   +N
Sbjct: 249 AFLFSALFSACASGRTPDLLDLAGKAEADMHMRRSSHNQGQRSNLQHKQDWLVAYNALLN 308

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
             +++     A +VY  M + G  PD + ++ LI      G  +AAFE  +E +  G+S 
Sbjct: 309 LHARSRQASAAEAVYQGMLQNGPKPDSISVNTLIAAHAEVGNADAAFERFREMQGMGLST 368

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG---DQLPKTM 351
              +Y SL+  C+   N + A  + + M+   ++PTV    +L+ A       D L +  
Sbjct: 369 NKSTYGSLLHCCAQVGNHKSAARVMQMMRYAGIQPTVEAYTSLMDACVKTGTPDSLSQAF 428

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           +V  +M+  G+ P  +TY  LLVACE+  DVE    L  QA E G++P       +I +C
Sbjct: 429 QVFEEMQQEGVEPTAVTYGCLLVACEQLGDVERAFQLYKQACERGIVPTDECHNILINVC 488

Query: 412 S 412
           +
Sbjct: 489 A 489



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 130/282 (46%), Gaps = 16/282 (5%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG------ 141
           P P   + N L++  A   +++ AF+  R +Q  GL  +   Y +L+  CA+ G      
Sbjct: 331 PKPDSISVNTLIAAHAEVGNADAAFERFREMQGMGLSTNKSTYGSLLHCCAQVGNHKSAA 390

Query: 142 KVDAM--FENVKPDRVVFNALITACGQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGA 196
           +V  M  +  ++P    + +L+ AC ++G  D   +AF V  EM  E   V+P  +T G 
Sbjct: 391 RVMQMMRYAGIQPTVEAYTSLMDACVKTGTPDSLSQAFQVFEEMQQE--GVEPTAVTYGC 448

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ AC   G V+RA ++YK   +  I  T E + I IN C+ TG  + A  +  ++ +  
Sbjct: 449 LLVACEQLGDVERAFQLYKQACERGIVPTDECHNILINVCAATGRVDEALELVKELARSH 508

Query: 257 VIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
                  L+++    A H   V  A  ++      G+     +  +L+GAC+      +A
Sbjct: 509 RAMQAASLNSVARALAAH--NVARALRMVSFMTTLGLPTYHQTTITLIGACARQHRAAEA 566

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
            +LY  ++   +  T S  + LI ALC      K + V  DM
Sbjct: 567 EDLYWGVRKRGMLVTRSAGSDLIVALCKAGWAGKALRVYRDM 608


>gi|298714808|emb|CBJ25707.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1273

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 127/525 (24%), Positives = 215/525 (40%), Gaps = 52/525 (9%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
            +Y  LI    R G + + +  LE   R GL      Y+A   +VC     +  A    + 
Sbjct: 751  TYTELISICGRSGDVHQALAQLERARRNGLSPNLINYNA-CVDVCAKTGEVDRALALLEQ 809

Query: 87   VPN-------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            +         P L TFN +++ CA + D      +   ++ AGLKAD + +   +  C K
Sbjct: 810  MQTSGDPALTPDLVTFNSVINACAKAGDWALTLWLFSEIKAAGLKADIQSFNAALDACTK 869

Query: 140  SGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHPVDPD 190
                +A          + ++PD + + + I AC   G    A  +L +M  + + P D D
Sbjct: 870  GSNPEAALALLKRMKSQGLEPDAISYQSAILACRAGGDGASAVMLLRDMEQQGLEPRDAD 929

Query: 191  HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +  +   ++     G    A E+ K +    I      Y  A+  C++  + + A ++ +
Sbjct: 930  YNLV---IETVGREGDWAGALELLKSMKAEGIAADAYTYGAAVGACAKGRNPDLARALLE 986

Query: 251  DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            +M   G+ P     +++I      G   AA  ++ E K Q +     ++S++M  C+  +
Sbjct: 987  EMKDLGLTPTRFCWNSIISVHSRTGNTTAAMTLMDEMK-QSMPCDETTFSAMMHGCAQTR 1045

Query: 311  NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            +W  A  L E M +  LKP  +    L+ A C   +L     ++  M+  G  P+  +Y+
Sbjct: 1046 DWDAAGRLLEEMNAAGLKPNDACYYTLLVAACRAGELRLAEGLIKGMRKDGAAPDLYSYT 1105

Query: 371  ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RYEKARTLNEHVLSFN 429
             L  AC R  D  + L L+   K DG+     ++   +  C R   E A  L E + S  
Sbjct: 1106 TLSAACGRFHDWRMALRLIESMKIDGIPATKKIYAAALAACGRGEAEIAEILLEMMRSQG 1165

Query: 430  SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRER-LVENLGVS 488
                ++++   S AL+ +      G  P   +V             DIRE+    NL   
Sbjct: 1166 V---ELDDVGRSHALVAFGR----GGRPDKALV----------LMDDIREKGPPPNLQCF 1208

Query: 489  ADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP-CVSFKEI 532
              A++   L   IDG         SLL E    GIVP  VSF+ +
Sbjct: 1209 NGAIEACALADDIDG-------GISLLAEMGRAGIVPNGVSFRSL 1246



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 160/372 (43%), Gaps = 47/372 (12%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
            P   T+  L+S+C  S D   A   L   +  GL  +   Y   +  CAK+G+VD   A+
Sbjct: 747  PNEVTYTELISICGRSGDVHQALAQLERARRNGLSPNLINYNACVDVCAKTGEVDRALAL 806

Query: 147  FENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
             E ++        PD V FN++I AC ++G       + +E+ A    +  D  +  A +
Sbjct: 807  LEQMQTSGDPALTPDLVTFNSVINACAKAGDWALTLWLFSEIKA--AGLKADIQSFNAAL 864

Query: 199  KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
             AC      + A  + K +    ++     Y  AI  C   GD   A  +  DM ++G+ 
Sbjct: 865  DACTKGSNPEAALALLKRMKSQGLEPDAISYQSAILACRAGGDGASAVMLLRDMEQQGLE 924

Query: 259  PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
            P +   + +I+  G  G    A E+L+  K +GI+    +Y + +GAC+  +N   A  L
Sbjct: 925  PRDADYNLVIETVGREGDWAGALELLKSMKAEGIAADAYTYGAAVGACAKGRNPDLARAL 984

Query: 319  YEHMKSIKLKPTVSTMNALIT----------ALCDGDQLPKTM----------------- 351
             E MK + L PT    N++I+          A+   D++ ++M                 
Sbjct: 985  LEEMKDLGLTPTRFCWNSIISVHSRTGNTTAAMTLMDEMKQSMPCDETTFSAMMHGCAQT 1044

Query: 352  -------EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
                    +L +M + GL PN   Y  LLVA  R  ++ +   L+   ++DG  P+L  +
Sbjct: 1045 RDWDAAGRLLEEMNAAGLKPNDACYYTLLVAACRAGELRLAEGLIKGMRKDGAAPDLYSY 1104

Query: 405  KCIIGMCSRRYE 416
              +   C R ++
Sbjct: 1105 TTLSAACGRFHD 1116



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 172/393 (43%), Gaps = 20/393 (5%)

Query: 39   GRISECIDLLEDMERKGLLDMDKVYHARFFN----VCKSQKAIKEAFRFFKLVPN----P 90
            G     I L++ M R  + D D       FN     C      + A R    +       
Sbjct: 619  GDWRNAIALIDVMTRASVTDKDAGPDVVCFNYAMTACAKAGECELAHRVLSRIQACGLAA 678

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA-----KSGKVDA 145
             L ++ + M   A +   E A ++L   +  GL  +   +TT +   A     K+ ++ +
Sbjct: 679  NLVSYGICMDAYAKAGLWEKALELLAEARSQGLSPNIVTFTTAVRGLACNDWDKAEEILS 738

Query: 146  MFEN--VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            M ++  +KP+ V +  LI+ CG+SG V +A   L    A  + + P+ I   A +  CA 
Sbjct: 739  MMKSRAIKPNEVTYTELISICGRSGDVHQALAQLE--RARRNGLSPNLINYNACVDVCAK 796

Query: 204  AGQVDRAREVYKMIHKYNIKG-TPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             G+VDRA  + + +        TP++ T    IN C++ GDW     ++ ++   G+  D
Sbjct: 797  TGEVDRALALLEQMQTSGDPALTPDLVTFNSVINACAKAGDWALTLWLFSEIKAAGLKAD 856

Query: 261  EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
                +A +D        EAA  +L+  K+QG+    ISY S + AC    +   A+ L  
Sbjct: 857  IQSFNAALDACTKGSNPEAALALLKRMKSQGLEPDAISYQSAILACRAGGDGASAVMLLR 916

Query: 321  HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
             M+   L+P  +  N +I  +         +E+L  MK+ G+  +  TY   + AC +  
Sbjct: 917  DMEQQGLEPRDADYNLVIETVGREGDWAGALELLKSMKAEGIAADAYTYGAAVGACAKGR 976

Query: 381  DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            + ++   LL + K+ G+ P    +  II + SR
Sbjct: 977  NPDLARALLEEMKDLGLTPTRFCWNSIISVHSR 1009



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/443 (22%), Positives = 185/443 (41%), Gaps = 64/443 (14%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK----------EAFRFFKLVP 88
           G   + ++LLE+ + KG+   +  Y        K+   +K          E      L P
Sbjct: 509 GEPGKALELLEEAKSKGVKPTEVTYATAIGACAKATTNVKANARKAVLLLEEMEAAGLEP 568

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------ 142
            P        ++V A+S+    A  +L  ++E G +     Y+  + + A+ G       
Sbjct: 569 YP--PAHQAALTVLAASEGHRAAMDLLAKMRENGTRLTSASYSPALKSAAQVGDWRNAIA 626

Query: 143 -VDAMF------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            +D M       ++  PD V FN  +TAC ++G  + A  VL+ + A    +  + ++ G
Sbjct: 627 LIDVMTRASVTDKDAGPDVVCFNYAMTACAKAGECELAHRVLSRIQA--CGLAANLVSYG 684

Query: 196 ALMKACANAG----------------------------------QVDRAREVYKMIHKYN 221
             M A A AG                                    D+A E+  M+    
Sbjct: 685 ICMDAYAKAGLWEKALELLAEARSQGLSPNIVTFTTAVRGLACNDWDKAEEILSMMKSRA 744

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           IK     YT  I+ C ++GD   A +  +   + G+ P+ +  +A +D     G+V+ A 
Sbjct: 745 IKPNEVTYTELISICGRSGDVHQALAQLERARRNGLSPNLINYNACVDVCAKTGEVDRAL 804

Query: 282 EILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338
            +L++ +  G   ++  +++++S++ AC+ A +W   L L+  +K+  LK  + + NA +
Sbjct: 805 ALLEQMQTSGDPALTPDLVTFNSVINACAKAGDWALTLWLFSEIKAAGLKADIQSFNAAL 864

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
            A   G      + +L  MKS GL P+ I+Y   ++AC    D    +MLL   ++ G+ 
Sbjct: 865 DACTKGSNPEAALALLKRMKSQGLEPDAISYQSAILACRAGGDGASAVMLLRDMEQQGLE 924

Query: 399 PNLVMFKCIIGMCSRRYEKARTL 421
           P    +  +I    R  + A  L
Sbjct: 925 PRDADYNLVIETVGREGDWAGAL 947



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 104/479 (21%), Positives = 182/479 (37%), Gaps = 90/479 (18%)

Query: 23   HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKG--LLDMDKVYHARFFNVCKSQKA 76
            + +S  L +YN  +    + G +   + LLE M+  G   L  D V      N C     
Sbjct: 778  NGLSPNLINYNACVDVCAKTGEVDRALALLEQMQTSGDPALTPDLVTFNSVINACAKAGD 837

Query: 77   IKEAFRFFKLVPNPTL----STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
                   F  +    L     +FN  +  C    + E A  +L+ ++  GL+ D   Y +
Sbjct: 838  WALTLWLFSEIKAAGLKADIQSFNAALDACTKGSNPEAALALLKRMKSQGLEPDAISYQS 897

Query: 133  LITTCAKSGK--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
             I  C   G          D   + ++P    +N +I   G+ G    A ++L  M AE 
Sbjct: 898  AILACRAGGDGASAVMLLRDMEQQGLEPRDADYNLVIETVGREGDWAGALELLKSMKAE- 956

Query: 185  HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT------------------- 225
              +  D  T GA + ACA     D AR + + +    +  T                   
Sbjct: 957  -GIAADAYTYGAAVGACAKGRNPDLARALLEEMKDLGLTPTRFCWNSIISVHSRTGNTTA 1015

Query: 226  ---------------PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
                              ++  ++ C+QT DW+ A  + ++M   G+ P++     L+  
Sbjct: 1016 AMTLMDEMKQSMPCDETTFSAMMHGCAQTRDWDAAGRLLEEMNAAGLKPNDACYYTLLVA 1075

Query: 271  AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
            A  AG++  A  +++  +  G +  + SY++L  AC    +W+ AL L E MK I   P 
Sbjct: 1076 ACRAGELRLAEGLIKGMRKDGAAPDLYSYTTLSAACGRFHDWRMALRLIESMK-IDGIPA 1134

Query: 331  VSTMNALITALCD-----------------------------------GDQLPKTMEVLS 355
               + A   A C                                    G +  K + ++ 
Sbjct: 1135 TKKIYAAALAACGRGEAEIAEILLEMMRSQGVELDDVGRSHALVAFGRGGRPDKALVLMD 1194

Query: 356  DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
            D++  G  PN   ++  + AC   DD++ G+ LL++    G++PN V F+ ++  C R+
Sbjct: 1195 DIREKGPPPNLQCFNGAIEACALADDIDGGISLLAEMGRAGIVPNGVSFRSLVSACERK 1253



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 159/354 (44%), Gaps = 17/354 (4%)

Query: 39   GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS----T 94
            G  +  + LL DME++GL   D  Y+     V + +     A    K +    ++    T
Sbjct: 906  GDGASAVMLLRDMEQQGLEPRDADYNLVIETVGR-EGDWAGALELLKSMKAEGIAADAYT 964

Query: 95   FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAMF 147
            +   +  CA  ++ + A  +L  +++ GL      + ++I+  +++G        +D M 
Sbjct: 965  YGAAVGACAKGRNPDLARALLEEMKDLGLTPTRFCWNSIISVHSRTGNTTAAMTLMDEMK 1024

Query: 148  ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANAGQ 206
            +++  D   F+A++  C Q+   D A  +L EMNA  + P D  + T+  L+ AC  AG+
Sbjct: 1025 QSMPCDETTFSAMMHGCAQTRDWDAAGRLLEEMNAAGLKPNDACYYTL--LVAAC-RAGE 1081

Query: 207  VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            +  A  + K + K         YT     C +  DW  A  + + M   G+   +   +A
Sbjct: 1082 LRLAEGLIKGMRKDGAAPDLYSYTTLSAACGRFHDWRMALRLIESMKIDGIPATKKIYAA 1141

Query: 267  LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
             +   G  G+ E A  +L+  ++QG+ +  +  S  + A        KAL L + ++   
Sbjct: 1142 ALAACGR-GEAEIAEILLEMMRSQGVELDDVGRSHALVAFGRGGRPDKALVLMDDIREKG 1200

Query: 327  LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
              P +   N  I A    D +   + +L++M   G+ PN +++  L+ ACERKD
Sbjct: 1201 PPPNLQCFNGAIEACALADDIDGGISLLAEMGRAGIVPNGVSFRSLVSACERKD 1254



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/402 (20%), Positives = 166/402 (41%), Gaps = 41/402 (10%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-KAIKEAFRFFK 85
           SYN L+      G     +  +EDM R G       Y   F    KS+ +    A   F+
Sbjct: 284 SYNWLVSAHAQLGDAKAVLATIEDMGRNGHPADADTYSLAFKAFVKSRGRHWGAALDVFR 343

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
            + + +  T    +  C    +  G  +V         +A  ++ + L++T      V  
Sbjct: 344 AMQSSSAETTPRRVGGCVVEGEGVGVAEV---------EASAEVSSELLSTDVWCKTVTT 394

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA- 204
           + +   P + +  AL               ++ E  A+   V+ D  T  A++ A   A 
Sbjct: 395 VAQGSPPRKTLSAAL--------------SLMEE--AQQAGVEVDAATTDAVLTALGKAK 438

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G+ ++   +++   +  ++   + Y  A+    + G  + A       +++G++   V  
Sbjct: 439 GKDEKLLALFRQAEERGLRLKRQSYAWAVVAYKRCGKAKEALDSALSFSERGIVMPVVGW 498

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-----NWQKALELY 319
           +A +  A   G+   A E+L+EAK++G+    ++Y++ +GAC+ A      N +KA+ L 
Sbjct: 499 NAAMHAASVTGEPGKALELLEEAKSKGVKPTEVTYATAIGACAKATTNVKANARKAVLLL 558

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E M++  L+P      A +T L   +     M++L+ M+  G    + +YS  L +  + 
Sbjct: 559 EEMEAAGLEPYPPAHQAALTVLAASEGHRAAMDLLAKMRENGTRLTSASYSPALKSAAQV 618

Query: 380 DDVE-----VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
            D       + +M  +   +    P++V F   +  C++  E
Sbjct: 619 GDWRNAIALIDVMTRASVTDKDAGPDVVCFNYAMTACAKAGE 660



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 107/245 (43%), Gaps = 11/245 (4%)

Query: 93   STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFEN 149
            +TF+ +M  CA ++D + A ++L  +  AGLK +   Y TL+    ++G++   + + + 
Sbjct: 1032 TTFSAMMHGCAQTRDWDAAGRLLEEMNAAGLKPNDACYYTLLVAACRAGELRLAEGLIKG 1091

Query: 150  VK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
            ++     PD   +  L  ACG+      A  ++  M  +  P         A + AC   
Sbjct: 1092 MRKDGAAPDLYSYTTLSAACGRFHDWRMALRLIESMKIDGIPATKK--IYAAALAACGR- 1148

Query: 205  GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
            G+ + A  + +M+    ++      + A+    + G  + A  + DD+ +KG  P+    
Sbjct: 1149 GEAEIAEILLEMMRSQGVELDDVGRSHALVAFGRGGRPDKALVLMDDIREKGPPPNLQCF 1208

Query: 265  SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
            +  I+    A  ++    +L E    GI    +S+ SL+ AC          +L E M  
Sbjct: 1209 NGAIEACALADDIDGGISLLAEMGRAGIVPNGVSFRSLVSACERKDKPDLKKDLREAMSR 1268

Query: 325  IKLKP 329
            + LKP
Sbjct: 1269 LGLKP 1273



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 159/388 (40%), Gaps = 38/388 (9%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P+L  F   +    + +    A  ++  V+EAG+      Y+ +I  C KSG++     
Sbjct: 97  TPSLGAFERAIQALGAGRKWAEAVGLMSEVEEAGMVPGEDTYSGVIRDCCKSGRIEEATR 156

Query: 144 --DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             DAM  +  KP + V N ++  C       +   VL  M A+   +D D  T    MKA
Sbjct: 157 MLDAMISKGYKPPQGVVNTVLDTCTTRKNTRKVTKVLLAMRAQ--GLDVDDATYRKAMKA 214

Query: 201 CANAGQVDRAREVYKM-IHKYNI---KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK- 255
           CA A    +   V+++ + K  +       EV  +A       GDW+    +    +   
Sbjct: 215 CAMANDPTQVVGVWELFVGKGRVVTDVAAAEVSRVA-RAMGSLGDWKGIIGLLGTKSTAG 273

Query: 256 -GVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMGAC--SNAK 310
            G +PD   LS     + HA  G  +A    +++    G      +YS    A   S  +
Sbjct: 274 GGALPDLDRLSYNWLVSAHAQLGDAKAVLATIEDMGRNGHPADADTYSLAFKAFVKSRGR 333

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGD-----QLPKTMEVLSDMKSLGLCPN 365
           +W  AL+++  M+S   + T   +   +    +G+     ++  + EV S++ S  +   
Sbjct: 334 HWGAALDVFRAMQSSSAETTPRRVGGCVV---EGEGVGVAEVEASAEVSSELLSTDVWCK 390

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
           T+T ++   +  RK  +   L L+ +A++ GV  +      ++        KA+  +E +
Sbjct: 391 TVT-TVAQGSPPRK-TLSAALSLMEEAQQAGVEVDAATTDAVLTALG----KAKGKDEKL 444

Query: 426 LSFNSGRPQIENKWTSLALMVYREAIVA 453
           L+      Q E +   L    Y  A+VA
Sbjct: 445 LALFR---QAEERGLRLKRQSYAWAVVA 469



 Score = 39.3 bits (90), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 32/142 (22%), Positives = 55/142 (38%)

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G+W  A    +     G  P        I   G   K   A  ++ E +  G+  G  +Y
Sbjct: 79  GEWTEAIEQLEKERGGGQTPSLGAFERAIQALGAGRKWAEAVGLMSEVEEAGMVPGEDTY 138

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           S ++  C  +   ++A  + + M S   KP    +N ++          K  +VL  M++
Sbjct: 139 SGVIRDCCKSGRIEEATRMLDAMISKGYKPPQGVVNTVLDTCTTRKNTRKVTKVLLAMRA 198

Query: 360 LGLCPNTITYSILLVACERKDD 381
            GL  +  TY   + AC   +D
Sbjct: 199 QGLDVDDATYRKAMKACAMAND 220


>gi|298706229|emb|CBJ29270.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 669

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 133/532 (25%), Positives = 218/532 (40%), Gaps = 106/532 (19%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK--EAFRFFKLVP---- 88
           L + GR  E   +LE M  KG+   D V +      C++ +  +  EA+     +     
Sbjct: 140 LSKSGRWKEATSVLESMPGKGVAP-DVVSYGAAIEACRAARGGRPDEAYGILSRMTARTG 198

Query: 89  ----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE----AGLKADCKLYTTLITTCAKS 140
                P +  FN +++  A S  S    Q L LV+E    AG+K D   ++TLI     +
Sbjct: 199 GKSVKPNMRCFNTVLAAFAKSGRSR---QALSLVEEDMVNAGVKPDLFTWSTLIDAYRAA 255

Query: 141 GKV--DA------MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           G+   DA      M E  V+PD   FN  + A  + G  + AF +L +M A    V+P+ 
Sbjct: 256 GESSRDAAELLGRMREAGVEPDVWCFNNCLNAARRRGEWELAFGLLEDMGA--AGVEPNC 313

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVY 249
            +  A+MKAC NA +      + + + +      P V+   I ++   ++G+WE A S+ 
Sbjct: 314 WSYSAVMKACVNAEEWTLVPALLRAMKEGGSTAPPNVWNFNICLDAYGKSGEWEKAVSLL 373

Query: 250 -DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-----------GISVGII 297
             DM   GV PD    S+ ID AG AG+ + A  +  EA+              I++G+ 
Sbjct: 374 RKDMPAAGVAPDVTSYSSAIDAAGKAGEWDTALALWDEARAALPPSALNSHAYNIAIGVC 433

Query: 298 ---------------------------SYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
                                      S+++ + AC+ A  W++AL L   M+   L+P 
Sbjct: 434 GKAGLADRALSLLSESRAAAGLPPNLRSFNAAIDACARAGRWERALSLLREMEEAGLEPD 493

Query: 331 VSTMNALITALCDGD--------------QLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           V +  + I A   G               +L   + +L +MKS GL P + ++S  +  C
Sbjct: 494 VVSFTSAIAAFRGGKAAAAAAAAAAAGERELSLALGLLEEMKSRGLPPTSFSHSAAIKLC 553

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----------RYEKARTLNEH- 424
              +  E  L L  + +  G   +   F  II  C+R           R+E A  L +  
Sbjct: 554 TDANQHERALELFEELRASGQAADEPAFTAIIDSCARHSGSGSGGGEGRWETAVALLDEM 613

Query: 425 --------VLSFNSGRPQIEN--KWTSLALMVYREAIVAGTIPTVEVVSKVL 466
                   V +FN       N  KW   + ++ R + V G  P V  ++ ++
Sbjct: 614 EASGVAPSVATFNGAIRACCNGGKWHLGSSLLRRMSAVDGVDPNVSSMNALI 665



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 165/381 (43%), Gaps = 41/381 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAFRFFKLV 87
           N   R+G       LLEDM   G+      Y A       +++     A+  A +     
Sbjct: 286 NAARRRGEWELAFGLLEDMGAAGVEPNCWSYSAVMKACVNAEEWTLVPALLRAMKEGGST 345

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRL-VQEAGLKADCKLYTTLITTCAKSGKVD-- 144
             P +  FN+ +     S + E A  +LR  +  AG+  D   Y++ I    K+G+ D  
Sbjct: 346 APPNVWNFNICLDAYGKSGEWEKAVSLLRKDMPAAGVAPDVTSYSSAIDAAGKAGEWDTA 405

Query: 145 -AMFENVKP-------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
            A+++  +        +   +N  I  CG++G  DRA  +L+E  A    + P+  +  A
Sbjct: 406 LALWDEARAALPPSALNSHAYNIAIGVCGKAGLADRALSLLSESRAAAG-LPPNLRSFNA 464

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC------------CSQTGDWEF 244
            + ACA AG+ +RA  + + + +  ++     +T AI               +  G+ E 
Sbjct: 465 AIDACARAGRWERALSLLREMEEAGLEPDVVSFTSAIAAFRGGKAAAAAAAAAAAGEREL 524

Query: 245 --ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
             A  + ++M  +G+ P     SA I     A + E A E+ +E +  G +    +++++
Sbjct: 525 SLALGLLEEMKSRGLPPTSFSHSAAIKLCTDANQHERALELFEELRASGQAADEPAFTAI 584

Query: 303 MGACSN---------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
           + +C+             W+ A+ L + M++  + P+V+T N  I A C+G +      +
Sbjct: 585 IDSCARHSGSGSGGGEGRWETAVALLDEMEASGVAPSVATFNGAIRACCNGGKWHLGSSL 644

Query: 354 LSDMKSL-GLCPNTITYSILL 373
           L  M ++ G+ PN  + + L+
Sbjct: 645 LRRMSAVDGVDPNVSSMNALI 665



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 143/329 (43%), Gaps = 29/329 (8%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAM-FENVKPDRVVFNAL 160
           E    +LR  +  G   +  +Y   I   +KSG+       +++M  + V PD V + A 
Sbjct: 112 ERVLSLLRQAEGDGAVVNHIMYNAAIGALSKSGRWKEATSVLESMPGKGVAPDVVSYGAA 171

Query: 161 ITAC--GQSGAVDRAFDVLAEMNAEV--HPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           I AC   + G  D A+ +L+ M A      V P+      ++ A A +G   R+R+   +
Sbjct: 172 IEACRAARGGRPDEAYGILSRMTARTGGKSVKPNMRCFNTVLAAFAKSG---RSRQALSL 228

Query: 217 IHK--YNIKGTPEVYTIA--INCCSQTGDWEF-ACSVYDDMTKKGVIPDEVFLSALIDFA 271
           + +   N    P+++T +  I+     G+    A  +   M + GV PD    +  ++ A
Sbjct: 229 VEEDMVNAGVKPDLFTWSTLIDAYRAAGESSRDAAELLGRMREAGVEPDVWCFNNCLNAA 288

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK--SIKLKP 329
              G+ E AF +L++    G+     SYS++M AC NA+ W     L   MK       P
Sbjct: 289 RRRGEWELAFGLLEDMGAAGVEPNCWSYSAVMKACVNAEEWTLVPALLRAMKEGGSTAPP 348

Query: 330 TVSTMNALITALCDGDQLPKTMEVL-SDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
            V   N  + A     +  K + +L  DM + G+ P+  +YS  + A  +  + +  L L
Sbjct: 349 NVWNFNICLDAYGKSGEWEKAVSLLRKDMPAAGVAPDVTSYSSAIDAAGKAGEWDTALAL 408

Query: 389 LSQAKEDGVIP----NLVMFKCIIGMCSR 413
             +A+    +P    N   +   IG+C +
Sbjct: 409 WDEAR--AALPPSALNSHAYNIAIGVCGK 435



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 83/188 (44%), Gaps = 14/188 (7%)

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G WE   S+       G + + +  +A I     +G+ + A  +L+    +G++  ++SY
Sbjct: 109 GKWERVLSLLRQAEGDGAVVNHIMYNAAIGALSKSGRWKEATSVLESMPGKGVAPDVVSY 168

Query: 300 SSLMGACSNAKNWQ--KALELYEHMKS----IKLKPTVSTMNALITALCDGDQLPKTMEV 353
            + + AC  A+  +  +A  +   M +      +KP +   N ++ A     +  + + +
Sbjct: 169 GAAIEACRAARGGRPDEAYGILSRMTARTGGKSVKPNMRCFNTVLAAFAKSGRSRQALSL 228

Query: 354 L-SDMKSLGLCPNTITYSILL----VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +  DM + G+ P+  T+S L+     A E   D      LL + +E GV P++  F   +
Sbjct: 229 VEEDMVNAGVKPDLFTWSTLIDAYRAAGESSRDA---AELLGRMREAGVEPDVWCFNNCL 285

Query: 409 GMCSRRYE 416
               RR E
Sbjct: 286 NAARRRGE 293



 Score = 46.2 bits (108), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 13/147 (8%)

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
           G  GK E    +L++A+  G  V  I Y++ +GA S +  W++A  + E M    + P V
Sbjct: 106 GGQGKWERVLSLLRQAEGDGAVVNHIMYNAAIGALSKSGRWKEATSVLESMPGKGVAPDV 165

Query: 332 STMNALITA--LCDGDQLPKTMEVLSDMKSL----GLCPNTITYSILLVACERKDDVEVG 385
            +  A I A     G +  +   +LS M +      + PN   ++ +L A  +       
Sbjct: 166 VSYGAAIEACRAARGGRPDEAYGILSRMTARTGGKSVKPNMRCFNTVLAAFAKSGRSRQA 225

Query: 386 LMLLSQAKED----GVIPNLVMFKCII 408
           L L+   +ED    GV P+L  +  +I
Sbjct: 226 LSLV---EEDMVNAGVKPDLFTWSTLI 249


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Glycine max]
          Length = 1113

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 177/389 (45%), Gaps = 14/389 (3%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI--KEAFRFF--KLVPNP 90
            ++ +  I E I   E +    +   D +       +CK +KA+  K+ F  F   L  +P
Sbjct: 727  ILIEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHP 786

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            T  ++N LM        +E A ++   ++ AG   +   Y  L+    KS ++D +FE  
Sbjct: 787  TPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELY 846

Query: 149  ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                    KP+ +  N +I+A  +S ++++A D+  E+ +      P   T G L+    
Sbjct: 847  NEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIIS--GDFSPTPCTYGPLIGGLL 904

Query: 203  NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             AG+ + A ++++ +  Y  K    +Y I IN   + G+   AC ++  M K+G+ PD  
Sbjct: 905  KAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLK 964

Query: 263  FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
              + L++     G+V+ A    +E K  G+    +SY+ ++     ++  ++AL L+  M
Sbjct: 965  SYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEM 1024

Query: 323  KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            K+  + P + T NALI    +   + +  ++  +++ +GL PN  TY+ L+    +  + 
Sbjct: 1025 KNRGISPELYTYNALILHFGNAGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNK 1084

Query: 383  EVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
            +    +  +    G  PN   F  +   C
Sbjct: 1085 DRAFSVFKKMMIVGCSPNAGTFAQLPNKC 1113



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 175/387 (45%), Gaps = 17/387 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVY-HARFFNVCKSQKAIKEAFRFFKLVPN---- 89
           L R+      +DLLE+ME  GL     +Y +     V      I +A+   K + +    
Sbjct: 237 LGRRRDTGTIMDLLEEMETLGL--RPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCG 294

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--- 146
           P + T+ +L+    ++   + A ++   ++ +  K D   Y TL++     G ++ +   
Sbjct: 295 PDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRF 354

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 +   PD V +  L+ A  +SG VD+AFD+L  M   V  + P+  T   L+   
Sbjct: 355 WSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVM--RVRGIVPNLHTYNTLISGL 412

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            N  ++D A E++  +    +  T   Y + I+   + GD E A   ++ M K+G++P  
Sbjct: 413 LNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSI 472

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              +A +      G++  A +I  +  N G+S   ++Y+ +M   S A    KA +L   
Sbjct: 473 AACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTE 532

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S   +P +  +N+LI  L    ++ +  ++   +K L L P  +TY+IL+    ++  
Sbjct: 533 MLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGK 592

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +   L L    KE G  PN V F  ++
Sbjct: 593 LLKALDLFGSMKESGCPPNTVTFNALL 619



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 183/437 (41%), Gaps = 57/437 (13%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+   +SY   I    + G   + +D  E M+++G++      +A  +++ +  + I+EA
Sbjct: 433 VAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGR-IREA 491

Query: 81  FRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F  + N  LS    T+NM+M   + +   + A ++L  +   G + D  +  +LI T
Sbjct: 492 KDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDT 551

Query: 137 CAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K+G+VD    MF  +K     P  V +N LIT  G+ G + +A D+   M     P  
Sbjct: 552 LYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCP-- 609

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ +T  AL+        VD A +++  +   N       Y   I    + G   +A   
Sbjct: 610 PNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWF 669

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLM---- 303
           Y  M KK + PD V L  L+      G+VE A +I+ E  +Q G+      +  LM    
Sbjct: 670 YHQM-KKFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECIL 728

Query: 304 -------------GACSNA------------------KNWQKALELYEHM-KSIKLKPTV 331
                        G   N+                  K    A +L++   KS+   PT 
Sbjct: 729 IEAEIEEAISFAEGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTP 788

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            + N L+  L   +     +++  +MK+ G CPN  TY++LL A  +   ++    L ++
Sbjct: 789 ESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNE 848

Query: 392 AKEDGVIPNLVMFKCII 408
               G  PN++    II
Sbjct: 849 MLCRGCKPNIITHNIII 865



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/349 (19%), Positives = 145/349 (41%), Gaps = 16/349 (4%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           YA DV         L + G++ +  D+L+ M  +G++     Y+     +   ++ + EA
Sbjct: 363 YAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRR-LDEA 421

Query: 81  FRFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F     L   PT  ++ + +       D E A      +++ G+          + +
Sbjct: 422 LELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYS 481

Query: 137 CAKSGKV---DAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
            A+ G++     +F ++      PD V +N ++    ++G +D+A  +L EM +E    +
Sbjct: 482 LAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSE--GCE 539

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD I + +L+     AG+VD A +++  +    +  T   Y I I    + G    A  +
Sbjct: 540 PDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDL 599

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +  M + G  P+ V  +AL+D       V+ A ++         S  +++Y++++     
Sbjct: 600 FGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIK 659

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
                 A   Y  MK   L P   T+  L+  +    ++   ++++ + 
Sbjct: 660 EGRAGYAFWFYHQMKKF-LSPDHVTLYTLLPGVVKDGRVEDAIKIVMEF 707



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 149/338 (44%), Gaps = 20/338 (5%)

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G    A +VYK +    +K + + Y+  +    +  D      + ++M   G+ P+    
Sbjct: 206 GFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTY 265

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           +  I   G AG+++ A+ IL+  +++G    +++Y+ L+ A   A    KA ELY  M++
Sbjct: 266 TICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRA 325

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
              KP + T   L++   +   L       S+M++ G  P+ +TY+IL+ A  +   V+ 
Sbjct: 326 SSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQ 385

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIE-----N 437
              +L   +  G++PNL  +  +I G+ + RR ++A  L  ++ S              +
Sbjct: 386 AFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFID 445

Query: 438 KWTSL-----ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE-----RLVENLGV 487
            +  L     AL  + +    G +P++   +  L    L     IRE       + N G+
Sbjct: 446 YYGKLGDPEKALDTFEKMKKRGIMPSIAACNASL--YSLAEMGRIREAKDIFNDIHNCGL 503

Query: 488 SADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
           S D++  + +       G+ D +A  LL E  S G  P
Sbjct: 504 SPDSVTYNMMMKCYSKAGQID-KATKLLTEMLSEGCEP 540



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 134/341 (39%), Gaps = 15/341 (4%)

Query: 72  KSQKAIKEAFRFFKLV---PN--PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           KS      A  +FK+V   PN   T  T N ++         E    V  L+Q+  +  +
Sbjct: 97  KSISDPNSALSYFKMVSQLPNIVHTPETCNYMLEFLRVHGRVEDMAFVFDLMQKQVINRN 156

Query: 127 CKLYTTLITTCA-KSGKVDAMFENVKPDRVVF-------NALITACGQSGAVDRAFDVLA 178
              Y T+    + K G   A F   K  +  F       N LI    Q G    A  V  
Sbjct: 157 PNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYK 216

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
            M +E   + P   T  ALM A           ++ + +    ++     YTI I    +
Sbjct: 217 RMISE--GLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVLGR 274

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G  + A  +   M  +G  PD V  + LID    AGK++ A E+  + +       +++
Sbjct: 275 AGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVT 334

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y +LM    N  + +     +  M++    P V T   L+ ALC   ++ +  ++L  M+
Sbjct: 335 YITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMR 394

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
             G+ PN  TY+ L+        ++  L L +  +  GV P
Sbjct: 395 VRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAP 435



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 63/147 (42%)

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           +++F    G+VE    +    + Q I+    +Y ++  A S     ++A      M+   
Sbjct: 128 MLEFLRVHGRVEDMAFVFDLMQKQVINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAG 187

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
                 + N LI  L       + ++V   M S GL P+  TYS L+VA  R+ D    +
Sbjct: 188 FVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIM 247

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            LL + +  G+ PN+  +   I +  R
Sbjct: 248 DLLEEMETLGLRPNIYTYTICIRVLGR 274


>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
          Length = 668

 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 156/343 (45%), Gaps = 11/343 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DA 145
            P    F+ L+S  A +   + A ++L   Q  GL       T LI+    +G+V   +A
Sbjct: 225 EPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEA 284

Query: 146 MF------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +F        +KP    +NAL+    +  ++  A  VL EM+     V PD  T   L+ 
Sbjct: 285 LFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQ--CGVAPDEATYSLLVD 342

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A   AG+ + AR + K +    +K +  V++  +      GDW+ A +V  +M   GV P
Sbjct: 343 AYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRP 402

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D  F + +ID  G    +  A +   + + +GI   ++++++L+ A        +A EL+
Sbjct: 403 DRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELF 462

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E M+     P  +T N +I  L + +       +LS+MK  GL PN ITY+ L+    R 
Sbjct: 463 EEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRS 522

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
              +  +  +   K DG+ P+  M+  ++   ++R      LN
Sbjct: 523 GRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALN 565



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/306 (24%), Positives = 146/306 (47%), Gaps = 13/306 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P  +T+++L+     +   E A  +L+ ++  G+K    +++ ++      G     F  
Sbjct: 332 PDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAV 391

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V+PDR  +N +I   G+   +  A D   +M  E   ++PD +T   L+ A 
Sbjct: 392 LREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREE--GIEPDVVTWNTLIDAH 449

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+ DRA E+++ + + N       Y I IN   +   WE   ++  +M ++G++P+ 
Sbjct: 450 CKGGRHDRAAELFEEMRESNCPPGTTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNI 509

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + L+D  G +G+ + A + ++  K  G+      Y +L+ A +       AL + + 
Sbjct: 510 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 569

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACER 378
           MK+  L+ ++  +N+LI A  +  ++ +   VL  M+  GL P+ ITY+ L   L+  E+
Sbjct: 570 MKADGLEVSILVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQ 629

Query: 379 KDDVEV 384
            D V V
Sbjct: 630 FDKVPV 635



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 1/160 (0%)

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           D+ +  + PD    S LI     A   +AA E+L  A+  G++    + ++L+ A   A 
Sbjct: 218 DLRESRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAG 277

Query: 311 NWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
              +A  L+ E   + ++KP     NAL+        L    +VL +M   G+ P+  TY
Sbjct: 278 RVAEAEALFLEFFLAGEIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATY 337

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           S+L+ A  R    E   +LL + + DGV P+  +F  I+ 
Sbjct: 338 SLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILA 377



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 13/130 (10%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS--- 93
           R GR  E ID +E M+  GL     +YHA   N    +     A    K +    L    
Sbjct: 521 RSGRYKEAIDCIEAMKADGLKPSPTMYHA-LVNAYAQRGLADHALNVVKAMKADGLEVSI 579

Query: 94  -TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---GKVDAMFEN 149
              N L++     +    AF VL+ ++E GL+ D   YTTL+    +     KV  ++E 
Sbjct: 580 LVLNSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEE 639

Query: 150 V-----KPDR 154
           +      PDR
Sbjct: 640 MITSGCAPDR 649


>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 162/347 (46%), Gaps = 21/347 (6%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFEN-----VKPDR 154
           A + D   A + L +VQ +GL         +I+    SG++   +A+FE      +KP  
Sbjct: 267 AKAGDPNKAMEFLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKT 326

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
             +N L+    ++G +  A  +++EM  E   V PD  T   L+ A +NAG+ + AR V 
Sbjct: 327 RAYNGLLKGYVKAGMLKDAEFIVSEM--ERSGVSPDECTYSLLIDAYSNAGRWESARIVL 384

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           K +   NI     V++  +      G+W+ +  V  +M   GV PD  F + +ID  G  
Sbjct: 385 KEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKNSGVRPDRHFYNVMIDTFGKF 444

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
             ++ A +   +  ++GI    +++++L+     A+  ++A EL+E M      P V+T 
Sbjct: 445 SCLDHAMDTFDKMLSEGIQPDTVTWNTLIDCHCKAELHERAEELFEEMMEKGFSPCVTTF 504

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N +I +  + ++      ++ +M+SLGL PN +TY+ L+    +       +  L   K 
Sbjct: 505 NIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYGKSGRFSDAIECLEDMKS 564

Query: 395 DGVIPNLVMFKCIIGMCSR-----------RYEKARTLNEHVLSFNS 430
            G+ P+  M+  +I   ++           R  +A +L   +L+ NS
Sbjct: 565 AGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLALNS 611



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 164/353 (46%), Gaps = 13/353 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           GRI E   + E+M+  GL    + Y+       K+       F   ++  +   P   T+
Sbjct: 305 GRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECTY 364

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           ++L+   +++   E A  VL+ ++   +  +  +++ ++ +    G+    F+       
Sbjct: 365 SLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMKN 424

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             V+PDR  +N +I   G+   +D A D   +M +E   + PD +T   L+     A   
Sbjct: 425 SGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSE--GIQPDTVTWNTLIDCHCKAELH 482

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           +RA E+++ + +         + I IN   +   W+   ++  +M   G++P+ V  + L
Sbjct: 483 ERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTL 542

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ID  G +G+   A E L++ K+ G+      Y++L+ A +     ++A+  +  M++  L
Sbjct: 543 IDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSL 602

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           KP++  +N+LI A  +  +  +   VL  MK   L P+ +TY+ L+ A  R D
Sbjct: 603 KPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKALIRVD 655



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 110/461 (23%), Positives = 211/461 (45%), Gaps = 32/461 (6%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-----MFE 148
           T+N L++ CA + D E A  ++  +++ G  +D   Y+ +I +  +S ++D+     ++ 
Sbjct: 186 TYNALINACARNNDLEKAINLISRMRQDGYPSDFVNYSLIIQSLVRSNRIDSPILQKLYS 245

Query: 149 NVKPDRV-----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            ++ D++     + N +I    ++G  ++A + L  + A    + P   T+ A++ A  +
Sbjct: 246 EIQCDKLELDVQLSNDIIVGFAKAGDPNKAMEFLGMVQAS--GLSPRTATLIAVISALGD 303

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           +G++  A  +++ +    +K     Y   +    + G  + A  +  +M + GV PDE  
Sbjct: 304 SGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLKDAEFIVSEMERSGVSPDECT 363

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            S LID   +AG+ E+A  +L+E +   I      +S ++ +  +   WQK+ ++ + MK
Sbjct: 364 YSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRILASYRDRGEWQKSFQVLKEMK 423

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV- 382
           +  ++P     N +I        L   M+    M S G+ P+T+T++  L+ C  K ++ 
Sbjct: 424 NSGVRPDRHFYNVMIDTFGKFSCLDHAMDTFDKMLSEGIQPDTVTWNT-LIDCHCKAELH 482

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLSFNSGRPQIENKWT 440
           E    L  +  E G  P +  F  +I       R++  +TL  ++ S     P +   +T
Sbjct: 483 ERAEELFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGL-LPNVVT-YT 540

Query: 441 SLALMVYREAIVAGTIPTVE-VVSKVLGCLQLPYNADIRERLVENLG---------VSAD 490
           +L  +  +    +  I  +E + S  L      YNA I     + L          + AD
Sbjct: 541 TLIDIYGKSGRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRAD 600

Query: 491 ALKRSNLC--SLIDGFGE--YDPRAFSLLEEAASFGIVPCV 527
           +LK S L   SLI+ FGE   D  AFS+L+      + P V
Sbjct: 601 SLKPSLLALNSLINAFGEDRRDAEAFSVLKYMKENDLKPDV 641



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 140/332 (42%), Gaps = 48/332 (14%)

Query: 111 AFQVLRLVQEAGLKADCKL-YTTLITTCAKSGKVDAMF-----ENVKPDRVVFNALITAC 164
           A+ V+  +Q+  L    +L Y+ LI    +S K+   F     + + P  + +NALI AC
Sbjct: 137 AYAVVSWLQKHNLCFSYELLYSILIHALGRSEKLYEAFLLSQQQALSP--LTYNALINAC 194

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA--REVYKMIHKYNI 222
            ++  +++A ++++ M  + +P   D +    ++++   + ++D    +++Y  I     
Sbjct: 195 ARNNDLEKAINLISRMRQDGYP--SDFVNYSLIIQSLVRSNRIDSPILQKLYSEI----- 247

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
                          Q    E    + +D+              ++ FA  AG    A E
Sbjct: 248 ---------------QCDKLELDVQLSNDI--------------IVGFA-KAGDPNKAME 277

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
            L   +  G+S    +  +++ A  ++    +A  ++E MK   LKP     N L+    
Sbjct: 278 FLGMVQASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYV 337

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
               L     ++S+M+  G+ P+  TYS+L+ A       E   ++L + + + ++PN  
Sbjct: 338 KAGMLKDAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSY 397

Query: 403 MFKCIIGMCSRRYEKARTLNEHVLSFNSG-RP 433
           +F  I+     R E  ++        NSG RP
Sbjct: 398 VFSRILASYRDRGEWQKSFQVLKEMKNSGVRP 429


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 189/406 (46%), Gaps = 27/406 (6%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFR 82
           +SYN LI      G + E ++L  DME++G L  D V +   A+ F++       +E  +
Sbjct: 221 YSYNILIHGLIVAGSMEEALELTNDMEKQG-LQPDMVTYKIVAKGFHLLGLMSGAREIIQ 279

Query: 83  FFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             K++ +    P L T+ +L+       + E A ++ R +  +G + +  LY+ L+++  
Sbjct: 280 --KMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLC 337

Query: 139 KSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           K G+VD   +        N++PD V ++ LI    + G V +A  +  EM    + + P+
Sbjct: 338 KRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMC--FNRIFPN 395

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
                 ++K     G +  AR  +  +   N++    +Y I I+   + GD E A  +Y 
Sbjct: 396 SFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYK 455

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            +  K + P  V  ++LI       KV  A  +L+  K  G+    ++Y++LM A     
Sbjct: 456 RLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEG 515

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
           N  K  EL   M    ++PTV T   +I  LC   +L +++++L DM++ GL P+ ITY+
Sbjct: 516 NINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYN 575

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY 415
            ++    +  D+     LL       + P    +  +I G+C  RY
Sbjct: 576 TIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLC--RY 619



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 131/280 (46%), Gaps = 7/280 (2%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           + PD   +N LI     +G+++ A ++  +M  E   + PD +T   + K     G +  
Sbjct: 216 ILPDTYSYNILIHGLIVAGSMEEALELTNDM--EKQGLQPDMVTYKIVAKGFHLLGLMSG 273

Query: 210 AREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
           ARE+  KM+    +K     YT+ I    Q G+ E A  +  D+   G   + +  S L+
Sbjct: 274 AREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLL 333

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKL 327
                 G+V+ A ++L E +   +   +++YS L+ G C   K  Q+A++LY+ M   ++
Sbjct: 334 SSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGK-VQQAIQLYKEMCFNRI 392

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P     + ++  LC+   L         +    L P+   Y+I++    +  DVE  + 
Sbjct: 393 FPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVR 452

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHV 425
           L  + ++  + P++V F  +I G C +R+  +AR L E +
Sbjct: 453 LYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESI 492



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/381 (21%), Positives = 171/381 (44%), Gaps = 29/381 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L ++G++ E + LL +ME   L      Y      +CK Q  +++A + +K +       
Sbjct: 336 LCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCK-QGKVQQAIQLYKEM------C 388

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY-TTLITTCAKSGKVDAMFENVKPD 153
           FN +        +S     +L+ + E G+ +D ++Y  +LI +            N++PD
Sbjct: 389 FNRIFP------NSFAHSGILKGLCEKGMLSDARMYFDSLIMS------------NLRPD 430

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
             ++N +I    + G V+ A  +   +  +   + P  +T  +L+       +V  AR +
Sbjct: 431 VTLYNIMIDGYVKLGDVEEAVRLYKRLRDK--AITPSIVTFNSLIYGFCKNRKVVEARRL 488

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
            + I  + ++ +   YT  +N   + G+      +  +M  K + P  V  + +I     
Sbjct: 489 LESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCK 548

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
             K+E + ++L++ + +G++   I+Y++++     AK+ +KA EL + M    L+PT +T
Sbjct: 549 QRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPAT 608

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            N LI  LC    +     VL  ++   +    + Y+ ++ A   K D +  + +  Q  
Sbjct: 609 YNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMV 668

Query: 394 EDGVIPNLVMFKCIIG-MCSR 413
           E G   ++  +  +I  +C R
Sbjct: 669 EKGFEVSIKDYSAVINRLCKR 689



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 155/346 (44%), Gaps = 18/346 (5%)

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A K  F+  +LV +       ML    AS    +  F ++++ +E  L+   + Y +L+ 
Sbjct: 74  ARKRRFKDLRLVLD------QMLQEEVASRMVHDALFVLVKM-KEQNLRPSIQTYNSLLY 126

Query: 136 TCAKSGKVDAMFENVK----PDRVVFNALIT--ACGQSGAVDRAFDVLAEMNAEVHPVDP 189
               +  +  ++ ++K    P     +++I    CGQS   D    VL     +     P
Sbjct: 127 NLRHTDIMWDVYNDIKDSGTPQSARTSSIIVDGLCGQSRFRDA---VLFLRQNDGKEFAP 183

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
             ++   +M      G  D A+  + M+ KY I      Y I I+     G  E A  + 
Sbjct: 184 SVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELT 243

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA-KNQGISVGIISYSSLMGACSN 308
           +DM K+G+ PD V    +       G +  A EI+Q+   ++G+   +++Y+ L+     
Sbjct: 244 NDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQ 303

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
             N ++AL L   + S   +  V   + L+++LC   Q+ + +++L +M++  L P+ +T
Sbjct: 304 MGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVT 363

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           YSIL+    ++  V+  + L  +   + + PN      I+ G+C +
Sbjct: 364 YSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEK 409


>gi|299473414|emb|CBN77812.2| conserved unknown protein (Partial) [Ectocarpus siliculosus]
          Length = 1130

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 156/364 (42%), Gaps = 58/364 (15%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS--------- 140
            P+L T+N L+ VC  +K+ + AF++L  + E  +K D   +   I+ C K          
Sbjct: 717  PSLDTYNRLLGVCEKNKEWDRAFKILDEMSELAIKPDIVSFGAAISACGKGLEWRRALAL 776

Query: 141  -----------------------------GKVDAMFENVK-----PDRVVFNALITACGQ 166
                                          + +AM E +      PD   +N++  A   
Sbjct: 777  LVRMQHDGIEPNLQCFNNVIHGLGLAGEWKRAEAMMEVIHKTGLVPDSYTYNSMAMAYAS 836

Query: 167  SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
            +G  D A DVL  M  E + V PD +T G LMKAC   G     R +   + +  I  T 
Sbjct: 837  AGESDMALDVLDTM--EKNGVQPDKVTYGTLMKACDGEGAFSIMRSLMDEMEQRGIPMTV 894

Query: 227  EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
              YT  I+  ++         ++  M  KGV P+    SA+I  A     V  A  +L+E
Sbjct: 895  HHYTTCIDAANRMEGTGMGWELWRQMGVKGVEPNNYAYSAIITTAAIDRDVRTALRLLEE 954

Query: 287  AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
             K +GIS+ ++SY+S + AC    +W  AL++ E M    + P + +  A + A   G++
Sbjct: 955  MKTKGISIDVVSYTSAICAC--GPDWLLALDVLEEMDKDGVAPNLLSFTAAMGACFKGEE 1012

Query: 347  LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD-----------VEVGLMLLSQAKED 395
              + + V + MK+ G+ P+   Y++ ++A +  ++            E GL L  +  E 
Sbjct: 1013 PREVINVFNRMKAAGVAPDLRAYNLAIMAHDADENHYGRASLEAELTEAGLSLQDKEWET 1072

Query: 396  GVIP 399
              +P
Sbjct: 1073 AWVP 1076



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 151/338 (44%), Gaps = 12/338 (3%)

Query: 93   STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---- 148
            S+F  +M+    + + + AF +   ++ AG+      Y  L+  C K+ + D  F+    
Sbjct: 685  SSFQTVMTDLGFAGEVDLAFSIYDDMRMAGIPPSLDTYNRLLGVCEKNKEWDRAFKILDE 744

Query: 149  ----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                 +KPD V F A I+ACG+     RA  +L  M  +   ++P+      ++     A
Sbjct: 745  MSELAIKPDIVSFGAAISACGKGLEWRRALALLVRMQHD--GIEPNLQCFNNVIHGLGLA 802

Query: 205  GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
            G+  RA  + ++IHK  +      Y       +  G+ + A  V D M K GV PD+V  
Sbjct: 803  GEWKRAEAMMEVIHKTGLVPDSYTYNSMAMAYASAGESDMALDVLDTMEKNGVQPDKVTY 862

Query: 265  SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
              L+      G       ++ E + +GI + +  Y++ + A +  +      EL+  M  
Sbjct: 863  GTLMKACDGEGAFSIMRSLMDEMEQRGIPMTVHHYTTCIDAANRMEGTGMGWELWRQMGV 922

Query: 325  IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
              ++P     +A+IT       +   + +L +MK+ G+  + ++Y+  + AC    D  +
Sbjct: 923  KGVEPNNYAYSAIITTAAIDRDVRTALRLLEEMKTKGISIDVVSYTSAICAC--GPDWLL 980

Query: 385  GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
             L +L +  +DGV PNL+ F   +G C +  E    +N
Sbjct: 981  ALDVLEEMDKDGVAPNLLSFTAAMGACFKGEEPREVIN 1018



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 96/511 (18%), Positives = 196/511 (38%), Gaps = 55/511 (10%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA-----RFFNVCKSQKAIKEA 80
           +E +  Y+    +  + E I + ++++  G+ +    Y A       FN C         
Sbjct: 529 TEGVEGYDEQESEAAMDEAIKVWKELKASGMYEGISPYSAGRLLHPLFNACD-------- 580

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ-----EAGLKADCKLYTTLIT 135
            +  K  P   L  F+++ S   S   S+  ++           + G+ AD ++      
Sbjct: 581 -KHAKYWPT-ALEVFDLMESYEYSPDKSDDRWRDEEKASGWRGGDGGISADERMAKEEDR 638

Query: 136 TCAKSGKVDAMFENVKPDRVVFNALITACGQSGA-VDRAFDVLAEMNAEVHPVDPDHITI 194
           T   +G+  +M   +   R           + GA  +R+ ++L E      P+     + 
Sbjct: 639 TAPTAGEYRSMLHILSHSRDA---------ERGANWERSMELLREAQENELPIS--ESSF 687

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             +M     AG+VD A  +Y  +    I  + + Y   +  C +  +W+ A  + D+M++
Sbjct: 688 QTVMTDLGFAGEVDLAFSIYDDMRMAGIPPSLDTYNRLLGVCEKNKEWDRAFKILDEMSE 747

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
             + PD V   A I   G   +   A  +L   ++ GI   +  +++++     A  W++
Sbjct: 748 LAIKPDIVSFGAAISACGKGLEWRRALALLVRMQHDGIEPNLQCFNNVIHGLGLAGEWKR 807

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A  + E +    L P   T N++  A     +    ++VL  M+  G+ P+ +TY  L+ 
Sbjct: 808 AEAMMEVIHKTGLVPDSYTYNSMAMAYASAGESDMALDVLDTMEKNGVQPDKVTYGTLMK 867

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 434
           AC+ +    +   L+ + ++ G+   +  +   I   +R                     
Sbjct: 868 ACDGEGAFSIMRSLMDEMEQRGIPMTVHHYTTCIDAANR--------------------- 906

Query: 435 IENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKR 494
           +E   T +   ++R+  V G  P     S ++    +  +     RL+E +     ++  
Sbjct: 907 MEG--TGMGWELWRQMGVKGVEPNNYAYSAIITTAAIDRDVRTALRLLEEMKTKGISIDV 964

Query: 495 SNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
            +  S I   G     A  +LEE    G+ P
Sbjct: 965 VSYTSAICACGPDWLLALDVLEEMDKDGVAP 995


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 179/398 (44%), Gaps = 24/398 (6%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----K 75
           V+   ++Y  LIR    +GR+++ + LL+DM R+G       Y      +CK+       
Sbjct: 138 VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAM 197

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A+ +  R     PN  + T+N++++        + A  +L  +   G + D   YTTL+ 
Sbjct: 198 AVLDEMRAKGCTPN--IVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLK 255

Query: 136 TCAKSGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
               S + D         M +N  P+ V F+ LI    + G V+RA  VL +M    H  
Sbjct: 256 GLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTE--HEC 313

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
             +      ++ +    G+VD A +    +  Y        YT  +    +   W  A  
Sbjct: 314 ATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKE 373

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +  +M +    P+EV  +  I      G +E A  ++++ +  G +VG+++Y++L+    
Sbjct: 374 LLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFC 433

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
              +   ALEL+   +S+  KP   T   L+T LC+ ++L    E++++M      PN +
Sbjct: 434 VQGHIDSALELF---RSMPCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVV 490

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           T+++L+    +K  ++  + L+ Q  E G  PNL+ + 
Sbjct: 491 TFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYN 528



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 154/372 (41%), Gaps = 41/372 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + +QGR+ +    L +M   G       Y      +C++++         ++V N   
Sbjct: 325 NSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCP 384

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P   TFN  + +       E A  ++  +QE G                           
Sbjct: 385 PNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGV---------------------- 422

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
                V +NAL+      G +D A ++   M     P  P+ IT   L+    NA ++D 
Sbjct: 423 -----VTYNALVNGFCVQGHIDSALELFRSM-----PCKPNTITYTTLLTGLCNAERLDA 472

Query: 210 ARE-VYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           A E V +M+H+      P V T  + +N   Q G  + A  + + M + G  P+ +  + 
Sbjct: 473 AAELVAEMLHR---DCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNT 529

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           L D        E A E+L    ++G+S  +I++SS++G  S     ++A++++   + I 
Sbjct: 530 LFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIG 589

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           ++P     N ++  LC   ++   ++ L+ M S G  PN  TY IL+    R+  ++   
Sbjct: 590 MRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQ 649

Query: 387 MLLSQAKEDGVI 398
            LLS     GV+
Sbjct: 650 DLLSMLCSRGVV 661



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 101/450 (22%), Positives = 187/450 (41%), Gaps = 27/450 (6%)

Query: 64  HARFFNVCKSQKAIKEAFR--FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL-VQE 120
           HA F N      A   A R     + PNP  +    L++     +D  GA +++ L    
Sbjct: 13  HATFPNPKPHHLAAAAATRPESPNVAPNPASARLRRLIA----REDLAGAARLVELSASR 68

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFENVKP--------DRVVFNALITACGQSGAVDR 172
            G   D  L T LI    + G+       ++         D   +N L+    + G +D 
Sbjct: 69  DGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDA 128

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
           A  ++  M     PV PD  T   L++   + G+V  A  +   + +   +     YT+ 
Sbjct: 129 ARRLIGSM-----PVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVL 183

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           +    +   +E A +V D+M  KG  P+ V  + +I+     G+V+ A ++L    + G 
Sbjct: 184 LEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGC 243

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
               +SY++L+     +K W    EL+  M      P   T + LI   C G  + + ++
Sbjct: 244 QPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQ 303

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           VL  M       NT   +I++ +  ++  V+     L+     G  P+ + +  ++ G+C
Sbjct: 304 VLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLC 363

Query: 412 -SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL- 469
            + R+  A+ L + ++  N   P  E  + +   ++ ++ ++   I  +E + +  GC  
Sbjct: 364 RAERWNDAKELLKEMVRNNC--PPNEVTFNTFICILCQKGLIEQAIMLIEQMQE-HGCTV 420

Query: 470 -QLPYNADIRERLVENLGVSADALKRSNLC 498
             + YNA +    V+    SA  L RS  C
Sbjct: 421 GVVTYNALVNGFCVQGHIDSALELFRSMPC 450



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/414 (20%), Positives = 168/414 (40%), Gaps = 51/414 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + R+GR+ +  DLL  +   G       Y      +C S++       F +++     
Sbjct: 220 NGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCM 279

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   TF+ML+         E A QVL+ + E     +  L   +I +  K G+VD  F+ 
Sbjct: 280 PNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKF 339

Query: 149 ------------------------------------------NVKPDRVVFNALITACGQ 166
                                                     N  P+ V FN  I    Q
Sbjct: 340 LNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQ 399

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
            G +++A  ++ +M  + H      +T  AL+      G +D A E+++ +     K   
Sbjct: 400 KGLIEQAIMLIEQM--QEHGCTVGVVTYNALVNGFCVQGHIDSALELFRSMP---CKPNT 454

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             YT  +         + A  +  +M  +   P+ V  + L++F    G ++ A E++++
Sbjct: 455 ITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQ 514

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               G +  +I+Y++L    +   + + ALEL   + S  + P V T +++I  L   D+
Sbjct: 515 MMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDR 574

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           + + +++    + +G+ P  + Y+ +L+   ++ +++  +  L+    +G +PN
Sbjct: 575 VEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPN 628


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 161/341 (47%), Gaps = 10/341 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P+  ++  +++     KD   A ++L  +  +GLK +  +Y+TLI   A  G++      
Sbjct: 347 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRL 406

Query: 144 -DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M    V PD   +NA+I+   ++G ++ A   L E+      + PD +T GA +   
Sbjct: 407 LDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQG--RGLKPDAVTFGAFILGY 464

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           +  G++  A + +  +  + +     +YT+ IN   + G+   A S++  +   GV+PD 
Sbjct: 465 SKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDV 524

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              SA I      G+V+ A ++  E K +G+   + +YSSL+         +KA EL++ 
Sbjct: 525 QTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDE 584

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    + P +   NAL+  LC    + +  ++   M   GL P+++TYS ++    + ++
Sbjct: 585 MCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSEN 644

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
           V     L  +    GV P+  ++  ++  C +  +  + +N
Sbjct: 645 VAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 685



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 192/407 (47%), Gaps = 22/407 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----KAIKEAFRFFKLVPNPT 91
           R+  +   ++LL++ME++ L+     Y A    +C  +       + E   F  L PN  
Sbjct: 326 REHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPN-- 383

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----MF 147
           +  ++ L+   AS    E A ++L  +  +G+  D   Y  +I+  +K+GK++     + 
Sbjct: 384 VVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLL 443

Query: 148 E----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           E     +KPD V F A I    ++G +  A     EM    H + P++     L+     
Sbjct: 444 EIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLD--HGLMPNNPLYTVLINGHFK 501

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           AG +  A  +++ +H   +   P+V T +  I+   + G  + A  V+ ++ +KG++PD 
Sbjct: 502 AGNLMEALSIFRHLHALGV--LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDV 559

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              S+LI      G+VE AFE+  E   +GI+  I  Y++L+     + + Q+A +L++ 
Sbjct: 560 FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDG 619

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    L+P   T + +I   C  + + +   +  +M S G+ P++  Y+ L+  C ++ D
Sbjct: 620 MPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGD 679

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMC-SRRYEKARTLNEHVLS 427
           +E  + L  +  + G    L     I G C S + ++A  L + +++
Sbjct: 680 MEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIA 726



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/408 (22%), Positives = 182/408 (44%), Gaps = 20/408 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   + G + E + +   +   G+L   +   A    + K+ + ++EA + F  +     
Sbjct: 497 NGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGR-VQEALKVFSELKEKGL 555

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P + T++ L+S      + E AF++   +   G+  +  +Y  L+    KSG +     
Sbjct: 556 VPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARK 615

Query: 144 --DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             D M E  ++PD V ++ +I    +S  V  AF +  EM ++   V P      AL+  
Sbjct: 616 LFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSK--GVQPHSFVYNALVHG 673

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           C   G +++A  +++ + +     T    T+    C      E A  ++ +M  K ++PD
Sbjct: 674 CCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE-ASQLFQEMIAKQIMPD 732

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + +ID+   AGK+E A  + +E + + + V  ++Y+SLM   +      +   L+E
Sbjct: 733 HVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFE 792

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M +  +KP   T   +I A C  D L +  ++  ++   G+      + +L+ A  +++
Sbjct: 793 KMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKRE 852

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF 428
           D+     LL +  E G+ P+L     ++    R + +A  ++E    F
Sbjct: 853 DLTEASKLLDEMGELGLKPSLAACSTLV----RSFHEAGKMDEATRVF 896



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 164/378 (43%), Gaps = 45/378 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L++ GR+ E + +  +++ KGL+     Y +     CK Q  +++AF     +      P
Sbjct: 534 LLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCK-QGEVEKAFELHDEMCLKGIAP 592

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
            +  +N L+     S D + A ++   + E GL+ D   Y+T+I    KS  V   F   
Sbjct: 593 NIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLF 652

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE------------------- 183
                + V+P   V+NAL+  C + G +++A ++  EM  +                   
Sbjct: 653 HEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSC 712

Query: 184 -------------VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
                           + PDH+T   ++     AG+++ A  ++K + + N+      YT
Sbjct: 713 KIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYT 772

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             +   ++ G      ++++ M  KGV PDEV    +I        +  AF++  E   +
Sbjct: 773 SLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGK 832

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G+      +  L+ A    ++  +A +L + M  + LKP+++  + L+ +  +  ++ + 
Sbjct: 833 GMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEA 892

Query: 351 MEVLSDMKSLGLCPNTIT 368
             V   +KSLGL P+T T
Sbjct: 893 TRVFEGVKSLGLVPDTTT 910



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 116/284 (40%), Gaps = 18/284 (6%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----------------PDHITIGALM 198
           VVF+ LI +  + G +D A +V      +   +                 P+  T   + 
Sbjct: 157 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIIT 216

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                A +++ A+  ++ + K  +K      +  I+   + GD +    + D M   G+ 
Sbjct: 217 AGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIP 276

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
            + +  + LI      GK+E A EIL+     G      ++  L+       N  +ALEL
Sbjct: 277 INLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALEL 336

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            + M+   L P+  +  A+I  LC    L    ++L  M   GL PN + YS L++    
Sbjct: 337 LDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYAS 396

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKART 420
           +  +E    LL      GV P++  +  II   S+  + E+A T
Sbjct: 397 EGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAST 440



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 143/362 (39%), Gaps = 32/362 (8%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + PD+    AL+      G +D    +  ++    I      Y + I+   + G  E A 
Sbjct: 240 LKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAA 299

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +   M   G  P+      LI+       +  A E+L E + + +    +SY +++   
Sbjct: 300 EILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGL 359

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            + K+   A +L E M    LKP V   + LI       ++ +   +L  M   G+ P+ 
Sbjct: 360 CHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDI 419

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNE 423
             Y+ ++    +   +E     L + +  G+ P+ V F   I       +  E A+  +E
Sbjct: 420 FCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDE 479

Query: 424 ---HVLSFN--------SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQL 471
              H L  N        +G  +  N     AL ++R     G +P V+  S  + G L+ 
Sbjct: 480 MLDHGLMPNNPLYTVLINGHFKAGNLME--ALSIFRHLHALGVLPDVQTCSAFIHGLLK- 536

Query: 472 PYNADIRERL-----VENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGI 523
             N  ++E L     ++  G+  D    S   SLI GF   GE + +AF L +E    GI
Sbjct: 537 --NGRVQEALKVFSELKEKGLVPDVFTYS---SLISGFCKQGEVE-KAFELHDEMCLKGI 590

Query: 524 VP 525
            P
Sbjct: 591 AP 592



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 137/350 (39%), Gaps = 57/350 (16%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  +  YN L+    + G I     L + M  KGL      Y       CKS+  + EA
Sbjct: 590 IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSEN-VAEA 648

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA----------- 125
           F  F  +P+    P    +N L+  C    D E A  + R + + G              
Sbjct: 649 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGY 708

Query: 126 --DCKL---------------------YTTLITTCAKSGKVDA---MFE-----NVKPDR 154
              CK+                     YTT+I    K+GK++    +F+     N+  D 
Sbjct: 709 CKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDT 768

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREV 213
           V + +L+    + G     F +  +M A+   V PD +T G ++ A C     V+  +  
Sbjct: 769 VTYTSLMYGYNKLGQSSEVFALFEKMVAK--GVKPDEVTYGLVIYAHCKEDNLVEAFKLR 826

Query: 214 YKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
            +++ K  + KGT  ++ + I    +  D   A  + D+M + G+ P     S L+    
Sbjct: 827 DEVVGKGMLTKGT--IHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFH 884

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
            AGK++ A  + +  K+ G+     +   L+    N  + + A  L + +
Sbjct: 885 EAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 934



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 67/178 (37%), Gaps = 18/178 (10%)

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII------------------SYSSLM 303
           V    LID     G ++ A  +   AKN  I + +I                  +Y+ + 
Sbjct: 157 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIIT 216

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                AK   +A   +E M+   LKP  +  +ALI        + + + +   M S G+ 
Sbjct: 217 AGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIP 276

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
            N ITY++L+    +   +E    +L      G  PN   F  +I    R +   R L
Sbjct: 277 INLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRAL 334


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 188/408 (46%), Gaps = 26/408 (6%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           +VS    SY  LI    + G++++  +L + +   G+      Y +    +C +  +  +
Sbjct: 5   NVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMAN-SFDD 63

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A   F  +      P+  T+N+++         E A  +++ + E G   D   Y T++ 
Sbjct: 64  ARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMD 123

Query: 136 TCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              KS +V+    +F  ++     P+R   N +I    Q   +D+A  V  EM A+  P 
Sbjct: 124 GLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIP- 182

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFA 245
            PD  + G L+   A AG+++ A ++++ +    I  +   Y + I+  C + T D   A
Sbjct: 183 -PDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDE--A 239

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-G 304
             ++  M  KG  P     + LID     GK++ AF +L+   + G    +++YS+L+ G
Sbjct: 240 LELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISG 299

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
            CS A+    A  L E M   + KPTV T N LI  LC   ++ +  EVL  M S G  P
Sbjct: 300 LCSIAR-VDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSP 358

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + +TY+ L+    R    E    LLS     G+ PN+V +  ++ G+C
Sbjct: 359 DVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLC 406



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 117/473 (24%), Positives = 209/473 (44%), Gaps = 41/473 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN +I    ++G + E  DL++ M   G +     Y+     +CKS + ++EA   F  
Sbjct: 82  TYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSR-VEEALLLFNE 140

Query: 85  --KLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
             +L   P   + N +++ +C  SK  + A QV   ++   +  D   Y  LI   AK+G
Sbjct: 141 MERLGCTPNRRSHNTIILGLCQQSKIDQ-ACQVFHEMEAKDIPPDSWSYGILIDGLAKAG 199

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K++  ++         + P  V +N +I     +  +D A ++   M ++     P   T
Sbjct: 200 KLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSK--GCRPSRFT 257

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYD 250
              L+ A    G++D   E ++++ +    G  P+V  Y+  I+        + A  + +
Sbjct: 258 FNILIDAHCKRGKLD---EAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLE 314

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           DM K+   P  V  + LI     AG+++ A E+L    + G S  +++Y++L+     A 
Sbjct: 315 DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAG 374

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             ++A EL   M +  L P V T  AL++ LC  ++LP+   V + MKS G  PN  TY+
Sbjct: 375 QTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYT 434

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK------CIIGMCSRRYEKARTLNEH 424
            L++       V+ GL L  +    G+ P+ V++       C  G  +R  E  R   E 
Sbjct: 435 ALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRES 494

Query: 425 VLSFNSGRP--------QIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
           + S   G           +E     +AL   R+ +  G +P  E  + ++  L
Sbjct: 495 LRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGL 547



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 140/317 (44%), Gaps = 43/317 (13%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQV 207
           NV PD   +  LI    ++G ++ A ++  ++   +H  V P  +   +L+     A   
Sbjct: 5   NVSPDSWSYGILIDGLAKAGKLNDARNLFQKL---LHSGVTPSTVAYTSLIHGLCMANSF 61

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D ARE++  +++     +P  Y + I+   + G  E AC +   M + G +PD V  + +
Sbjct: 62  DDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTV 121

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL-MGACSNAKNWQKALELYEHMKSIK 326
           +D    + +VE A  +  E +  G +    S++++ +G C  +K   +A +++  M++  
Sbjct: 122 MDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSK-IDQACQVFHEMEAKD 180

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY----------------- 369
           + P   +   LI  L    +L +  ++   M   G+ P+ +TY                 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 370 ------------------SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
                             +IL+ A  ++  ++    LL +  +DG +P++V +  +I G+
Sbjct: 241 ELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGL 300

Query: 411 CS-RRYEKARTLNEHVL 426
           CS  R + AR L E ++
Sbjct: 301 CSIARVDDARHLLEDMV 317



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 126/316 (39%), Gaps = 30/316 (9%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M ++ V PD      LID    AGK+  A  + Q+  + G++   ++Y+SL+     A +
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           +  A EL+  M      P+  T N +I A C    L +  +++  M   G  P+ +TY+ 
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS 430
           ++    +   VE  L+L ++ +  G  PN      II G+C +          H +    
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 431 GRPQIENKWT--------------SLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 476
             P   + W+              + A  +++  + +G  P+    + V+  + L Y  D
Sbjct: 181 IPP---DSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLD 237

Query: 477 IRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVPCV------ 527
               L +++        R     LID     G+ D  AF LL+     G VP V      
Sbjct: 238 EALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLD-EAFRLLKRMTDDGHVPDVVTYSTL 296

Query: 528 --SFKEIPVVVDARKL 541
                 I  V DAR L
Sbjct: 297 ISGLCSIARVDDARHL 312


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 186/399 (46%), Gaps = 23/399 (5%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLL----DMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           +N  +++G + + ++    +  +GL+    D +K+       +C   + I  A  FF ++
Sbjct: 212 FNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKG----LCMGNQ-IGVASDFFDMM 266

Query: 88  ----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
               P+P L TF+ L++V       + AF +  L+ E G+  D  +Y+ LI    ++GK+
Sbjct: 267 VRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKL 326

Query: 144 D--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +        A+   VK D V+F++++ A  + G + +A +V   M  E   + P+ +T  
Sbjct: 327 EEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKE--GISPNVVTYS 384

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            L+      G+V  A  V+  I K  ++ +   Y+  I+   ++ +      +Y  M +K
Sbjct: 385 ILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRK 444

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G +PD V  S LI+     G ++ A     +A  +G+++    +++L+  C   K  +  
Sbjct: 445 GHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDG 504

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           L++Y  M   K+ P V T   L+  L +  +L + + +   +   G  P+ I Y  L+  
Sbjct: 505 LKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDG 564

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
             +K D   GL +    + +G+ P++ ++  +I M  R 
Sbjct: 565 FCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFRE 603



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 175/390 (44%), Gaps = 14/390 (3%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTL 92
           +R G + + I++   M ++G+      Y      +C++ + ++    F +++     P++
Sbjct: 356 VRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSV 415

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----MFE 148
            T++ L+     S++    F +  ++   G   D  + + LI   ++ G +D      F+
Sbjct: 416 LTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQ 475

Query: 149 NVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
            VK     +  +FNALI  C +         +   M   ++ V PD +T   L+K  A  
Sbjct: 476 AVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMG--MYKVIPDVVTYTVLVKGLAEQ 533

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G++D A  ++  + K        +Y   I+   +  D      ++  M   G+ PD    
Sbjct: 534 GRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIY 593

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + LI+     G VE   E+L+E    G+   I++Y++++    + K + KA++L+E +K 
Sbjct: 594 NVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKC 653

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
            + +P   T   LI A C   ++   M + S M   G  PN +TYS L+    + ++ E 
Sbjct: 654 GRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTES 713

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
              L  +   D V PN+V +  +I G+C +
Sbjct: 714 AFELYEKMLGDRVSPNIVSYSILIDGLCKK 743



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 157/393 (39%), Gaps = 41/393 (10%)

Query: 32  YNRLIRQGRISE---CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           Y  ++R+G + +   C  L+  + R+G++D                    EA RFF    
Sbjct: 438 YGIMLRKGHVPDVVVCSMLINGLSRQGMMD--------------------EALRFFFQAV 477

Query: 89  NPTLST----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
              L+     FN L+  C   K +    ++  L+    +  D   YT L+   A+ G++D
Sbjct: 478 KRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLD 537

Query: 145 ---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
              A+F     +   PD +++  LI    +         +   M +  + + PD      
Sbjct: 538 EALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQS--NGIFPDICIYNV 595

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF--ACSVYDDMTK 254
           L+      G V+   E+ + I KY ++  P++ T     C       F  A  +++ +  
Sbjct: 596 LINMFFREGCVENVLELLREIIKYGLE--PDIVTYNTMICGYCSLKIFSKAIKLFEVLKC 653

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
               P+ +  + LID     G+++ A  I      +G    I++YS L+      +N + 
Sbjct: 654 GRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTES 713

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ELYE M   ++ P + + + LI  LC    + +            L P+ I Y IL+ 
Sbjct: 714 AFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIR 773

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
              +   +   +ML      +G++P+ ++ K +
Sbjct: 774 GYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKAL 806



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 113/262 (43%), Gaps = 7/262 (2%)

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
           Q G     FD++           P+ +T   L+       ++D A  +Y ++ +  I   
Sbjct: 255 QIGVASDFFDMMVRSGPS-----PNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPD 309

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
             +Y+I IN   + G  E   S++     +GV  D V  S+++D     G +  A E+  
Sbjct: 310 LVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYT 369

Query: 286 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
               +GIS  +++YS L+ G C N +  + A  ++  +    L+P+V T ++LI   C  
Sbjct: 370 RMLKEGISPNVVTYSILINGLCRNGRVLE-ACGVFGQILKQGLEPSVLTYSSLIDGFCKS 428

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           + L     +   M   G  P+ +  S+L+    R+  ++  L    QA + G+  N  +F
Sbjct: 429 ENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLF 488

Query: 405 KCIIGMCSRRYEKARTLNEHVL 426
             +I  C R       L  ++L
Sbjct: 489 NALIDGCFRLKRTRDGLKMYIL 510



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/344 (20%), Positives = 143/344 (41%), Gaps = 24/344 (6%)

Query: 141 GKVDAMFENVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           G+    F N   +   V++ L+    ++G VDRA D  A M+     V   H     ++ 
Sbjct: 126 GEFHGSFRNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSK--MGVSISHYAASEMLD 183

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              ++ ++D   E Y+ + K        VY    N   + G+ E   + +  + ++G++P
Sbjct: 184 LLIDSDRIDVILENYEEMCK-----GLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVP 238

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
             V  + ++       ++  A +        G S  ++++S+L+          +A  LY
Sbjct: 239 KIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLY 298

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M    + P +   + LI  L    +L +   + S   + G+  + + +S ++ A  R 
Sbjct: 299 NLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRV 358

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKA--------RTLNEHVLSF 428
            D+   + + ++  ++G+ PN+V +  +I G+C   R  E          + L   VL++
Sbjct: 359 GDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTY 418

Query: 429 NS---GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
           +S   G  + EN      L  Y   +  G +P V V S ++  L
Sbjct: 419 SSLIDGFCKSENLRDGFGL--YGIMLRKGHVPDVVVCSMLINGL 460



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 115/284 (40%), Gaps = 50/284 (17%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L  QGR+ E + L   + +KG      +Y       CK +       + FKL+ +    P
Sbjct: 530 LAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDP-ATGLQIFKLMQSNGIFP 588

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKS--GKVDAMF 147
            +  +N+L+++       E   ++LR + + GL+ D   Y T+I   C+     K   +F
Sbjct: 589 DICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLF 648

Query: 148 ENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           E +K     P+ + F  LI A  + G +D A  + + M  E  P +P+ +T   L+    
Sbjct: 649 EVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSM-LERGP-EPNILTYSCLIDGYF 706

Query: 203 NAGQVDRAREVY-KM--------IHKYNI-------KGTPEVYTIAINCC---------- 236
                + A E+Y KM        I  Y+I       KG  E  ++A  C           
Sbjct: 707 KTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVI 766

Query: 237 ---------SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
                     + G    A  +YD M   G++PD++   AL ++ 
Sbjct: 767 AYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAEYG 810


>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
 gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Cucumis sativus]
          Length = 720

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/376 (24%), Positives = 173/376 (46%), Gaps = 20/376 (5%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS---- 93
            GR  E   + E+M+  GL    K ++A      + + ++KEA      +    LS    
Sbjct: 329 HGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYAR-KGSLKEAESIISEMEKSGLSPDEH 387

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           T+ +L+   A+    E A  +L+ ++   ++ +  +++ ++ +    G+    FE     
Sbjct: 388 TYGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREM 447

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
              NVKPDR  +N +I   G+   +D A +    M +E   ++PD +T   L+      G
Sbjct: 448 KNSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSE--GIEPDVVTWNTLIDCHRKHG 505

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
             DRA E+++ + +      P  Y I IN   +   W+    +   M  +G++P+ V  +
Sbjct: 506 YHDRAAELFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYT 565

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+D  GH+G+   A + L+  K+ G+      Y++L+ A +     ++A+  Y  M S 
Sbjct: 566 TLVDIYGHSGRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISD 625

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE-- 383
            L+P++  +N+LI A  +  +  +   +L  MK   + P+ +TY+ L+ A  R D  +  
Sbjct: 626 GLRPSLLALNSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKALIRVDKFDKV 685

Query: 384 ---VGLMLLSQAKEDG 396
                 M+LS    DG
Sbjct: 686 PAVYEEMILSGCTPDG 701



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 156/327 (47%), Gaps = 14/327 (4%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-----AMFE 148
           T+N L+  CA + D E A  ++  +++ G ++D   Y+ +I +  ++ K+D      ++E
Sbjct: 211 TYNALIGACARNNDLEKALNLMSRMRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYE 270

Query: 149 NVKPDRV-----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            ++ D++     + N +I    ++G  +RA   L+ + A    ++P   T  A++ A  N
Sbjct: 271 EIESDKIELDGLLLNDIILGFAKAGDPNRALYFLSMVQAS--GLNPKTSTFVAVISALGN 328

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G+ + A  +++ + +  +K   + +   +   ++ G  + A S+  +M K G+ PDE  
Sbjct: 329 HGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHT 388

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
              L+D   + G+ E+A  +L++ + + +      +S ++ +  +   WQK  E+   MK
Sbjct: 389 YGLLVDAYANVGRWESARHLLKQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMK 448

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV- 382
           +  +KP     N +I      + L   ME    M S G+ P+ +T++  L+ C RK    
Sbjct: 449 NSNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSEGIEPDVVTWNT-LIDCHRKHGYH 507

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           +    L  + +E G +P    +  +I 
Sbjct: 508 DRAAELFEEMQERGYLPCPTTYNIMIN 534



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 167/411 (40%), Gaps = 59/411 (14%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEN-----VKPDR 154
           A + D   A   L +VQ +GL      +  +I+     G+ +   A+FE      +KP  
Sbjct: 292 AKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRI 351

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
             FNAL+    + G++  A  +++EM  E   + PD  T G L+ A AN G+ + AR + 
Sbjct: 352 KAFNALLKGYARKGSLKEAESIISEM--EKSGLSPDEHTYGLLVDAYANVGRWESARHLL 409

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWE------------------------------F 244
           K +   N++    +++  +      G+W+                              F
Sbjct: 410 KQMEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDTFGKF 469

Query: 245 AC-----SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
            C       YD M  +G+ PD V  + LID     G  + A E+ +E + +G      +Y
Sbjct: 470 NCLDHAMETYDRMLSEGIEPDVVTWNTLIDCHRKHGYHDRAAELFEEMQERGYLPCPTTY 529

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           + ++ +    + W +   L   M+S  L P V T   L+       +    ++ L  MKS
Sbjct: 530 NIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYGHSGRFNDAIDCLEAMKS 589

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEK 417
            GL P+   Y+ L+ A  ++   E  +        DG+ P+L+    +I      RR  +
Sbjct: 590 AGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLALNSLINAFGEDRRDIE 649

Query: 418 ARTLNEHVLSFNSGRPQIENKWTSLALM-----------VYREAIVAGTIP 457
           A ++ +++   N  +P +    T +  +           VY E I++G  P
Sbjct: 650 AFSILQYMKE-NDVKPDVVTYTTLMKALIRVDKFDKVPAVYEEMILSGCTP 699



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 153/378 (40%), Gaps = 38/378 (10%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           ++++ LI A G+S  +  AF +L++       + P  +T  AL+ ACA    +++A  + 
Sbjct: 180 LLYSILIHALGRSEKLYEAF-ILSQKQT----LTP--LTYNALIGACARNNDLEKALNLM 232

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
             + +   +     Y++ I   ++T   D      +Y+++    +  D + L+ +I    
Sbjct: 233 SRMRQDGFQSDFINYSLIIQSLTRTNKIDIPLLQKLYEEIESDKIELDGLLLNDIILGFA 292

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            AG    A   L   +  G++    ++ +++ A  N    ++A  ++E MK   LKP + 
Sbjct: 293 KAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIK 352

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
             NAL+        L +   ++S+M+  GL P+  TY +L+ A       E    LL Q 
Sbjct: 353 AFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQM 412

Query: 393 KEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 452
           +   V PN  +F  I+     R E  +T                         V RE   
Sbjct: 413 EARNVQPNTFIFSRILASYRDRGEWQKTFE-----------------------VLREMKN 449

Query: 453 AGTIPT---VEVVSKVLGCLQ-LPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD 508
           +   P      V+    G    L +  +  +R++   G+  D +  + L       G +D
Sbjct: 450 SNVKPDRHFYNVMIDTFGKFNCLDHAMETYDRMLSE-GIEPDVVTWNTLIDCHRKHGYHD 508

Query: 509 PRAFSLLEEAASFGIVPC 526
            RA  L EE    G +PC
Sbjct: 509 -RAAELFEEMQERGYLPC 525


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 182/396 (45%), Gaps = 13/396 (3%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV       N   ++G   +      +M  +G+L     Y++    +CK+Q   K     
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +V N   P   T+N ++    SS   + A   L+ ++  G++ D   Y+ L+    K+
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314

Query: 141 GK-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+        D+M +  +KP+   +  L+      GA+     +L  M    + + PDH 
Sbjct: 315 GRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPDHY 372

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
               L+ A A  G+VD+A  V+  + +  +      Y   I    ++G  E A   ++ M
Sbjct: 373 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             +G+ P  +  ++LI       K E A E++ E  ++GI +  I ++S++ +       
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            ++ +L+E M  I +KP V T N LI   C   ++ + M++LS M S+GL PNT+TYS L
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +    +   +E  L+L  + +  GV P+++ +  I+
Sbjct: 553 INGYCKISRMEDALVLFKEMESSGVSPDIITYNIIL 588



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 158/354 (44%), Gaps = 22/354 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           P L T+ +L+  C  +   +  F  L  V + G + D   +T L+   CA     DAM  
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMK 199
            ++        P+   +N L+           A ++L  M +       PD ++   ++ 
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGT-PEVYT----IAINCCSQTGDWEFACSVYDDMTK 254
                G  D+A   Y   H+   +G  P+V T    IA  C +Q  D   A  V + M K
Sbjct: 205 GFFKEGDSDKAYSTY---HEMLDRGILPDVVTYNSIIAALCKAQAMDK--AMEVLNTMVK 259

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            GV+PD +  ++++     +G+ + A   L++ ++ G+   +++YS LM          +
Sbjct: 260 NGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCME 319

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ++++ M    LKP ++T   L+        L +   +L  M   G+ P+   +SIL+ 
Sbjct: 320 ARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILIC 379

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNEHVL 426
           A  ++  V+  +++ S+ ++ G+ PN V +  +IG +C S R E A    E ++
Sbjct: 380 AYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/383 (20%), Positives = 162/383 (42%), Gaps = 15/383 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + GR  E   + + M ++GL      Y         ++ A+ E      L+     +P
Sbjct: 311 LCKNGRCMEARKIFDSMTKRGLKPEITTY-GTLLQGYATKGALVEMHGLLDLMVRNGIHP 369

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMF-- 147
               F++L+   A     + A  V   +++ GL  +   Y  +I    KSG+V DAM   
Sbjct: 370 DHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYF 429

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                E + P  +V+N+LI         +RA +++ EM      +  + I   +++ +  
Sbjct: 430 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD--RGICLNTIFFNSIIDSHC 487

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G+V  + ++++++ +  +K     Y   IN     G  + A  +   M   G+ P+ V
Sbjct: 488 KEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTV 547

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             S LI+      ++E A  + +E ++ G+S  II+Y+ ++      +    A ELY  +
Sbjct: 548 TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 607

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
                +  +ST N ++  LC        +++  ++  + L     T++I++ A  +    
Sbjct: 608 TESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRN 667

Query: 383 EVGLMLLSQAKEDGVIPNLVMFK 405
           +    L      +G++PN   ++
Sbjct: 668 DEAKDLFVAFSSNGLVPNYWTYR 690



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 9/247 (3%)

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           + AV R ++ +A   A+   V PD  T G L+  C  AG++D        + K   +   
Sbjct: 66  AAAVSR-YNRMARAGAD--EVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDA 122

Query: 227 EVYT-IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
             +T +    C+     +    V   MT+ G IP+    + L+       + + A E+L 
Sbjct: 123 IAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLH 182

Query: 286 ---EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
              + +  G    ++SY++++       +  KA   Y  M    + P V T N++I ALC
Sbjct: 183 MMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALC 242

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
               + K MEVL+ M   G+ P+ +TY SIL   C      E  +  L + + DGV P++
Sbjct: 243 KAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE-AIGFLKKMRSDGVEPDV 301

Query: 402 VMFKCII 408
           V +  ++
Sbjct: 302 VTYSLLM 308


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 177/382 (46%), Gaps = 38/382 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-----KLV 87
           N L + G+    + +L  +E K L++ + V ++   +     K + +A+  +     K +
Sbjct: 166 NGLCKMGQTRAALQVLRQIEGK-LVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRI 224

Query: 88  PNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           P PT+ TF+ L+   C   K  +      RL  E  +K                      
Sbjct: 225 P-PTVVTFSSLIYGFCIVGKFKDA----FRLFNEMVMK---------------------- 257

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
             N+ PD   FN L+ A  + G +  A +V+A M  E   V+P  +T   LM       +
Sbjct: 258 --NINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKE--GVEPTVVTYNTLMDGYCLVNE 313

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           V +A+ V  +I +  +      Y I IN   +    + A  ++ +M  +G+ P +V  ++
Sbjct: 314 VGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNS 373

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LID    AG++  A+E++ E  N  I   I++Y+SL+      ++  KA+ L + +K   
Sbjct: 374 LIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHG 433

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           ++P + T N LI  LC G QL    +V  D+   G   N  TY+I++    ++   +   
Sbjct: 434 IQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAE 493

Query: 387 MLLSQAKEDGVIPNLVMFKCII 408
           +LLS+ +++G+IP+ V ++ II
Sbjct: 494 VLLSKMEDNGIIPDAVTYETII 515



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 121/284 (42%), Gaps = 20/284 (7%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAE-------MNAEVHPV------------D 188
           + VKPD    + LI      G +  AF V A+       +N +V+               
Sbjct: 96  KGVKPDLFTLSILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLALGFH 155

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
            +H+T G L+      GQ   A +V + I    +     +Y+  I+   +      A  +
Sbjct: 156 LNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGL 215

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           Y +M  K + P  V  S+LI      GK + AF +  E   + I+    +++ L+ A   
Sbjct: 216 YSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCK 275

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
               ++A  +   M    ++PTV T N L+   C  +++ K   VLS +  + + PN+ +
Sbjct: 276 EGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRS 335

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           Y+I++    +   V+  L L  +    G+ P+ V +  +I G+C
Sbjct: 336 YNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLC 379



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 129/290 (44%), Gaps = 25/290 (8%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-----KSQ 74
           +++   +++N L+    ++G+I E  +++  M ++G+      Y+      C        
Sbjct: 258 NINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKA 317

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           K +       ++ PN    ++N++++     K  + A  +   +   G+      Y +LI
Sbjct: 318 KHVLSIISRMRVAPNS--RSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLI 375

Query: 135 TTCAKSGK-------VDAMFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               K+G+       VD M  N  P D V +N+LI    ++  VD+A  ++ ++    H 
Sbjct: 376 DGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKE--HG 433

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYK--MIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
           + P+  T   L+      GQ+  A++V++  +I  YN+      Y I IN   + G ++ 
Sbjct: 434 IQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAW--TYNIMINGLCKEGLFDE 491

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
           A  +   M   G+IPD V    +I    H  + E A ++L+E   +G+ V
Sbjct: 492 AEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGVVV 541



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 146/345 (42%), Gaps = 53/345 (15%)

Query: 226 PEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPD---------------------EV 262
           P+++T  I INC    G   FA SV+  + K G+  +                      V
Sbjct: 100 PDLFTLSILINCYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLALGFHLNHV 159

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
               LI+     G+  AA ++L++ + + ++  ++ YS+++      K    A  LY  M
Sbjct: 160 TYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEM 219

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
              ++ PTV T ++LI   C   +      + ++M    + P+  T++IL+ A  ++  +
Sbjct: 220 IVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKI 279

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIEN--- 437
           +    +++   ++GV P +V +  ++ G C      KA+    HVLS  S      N   
Sbjct: 280 KEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAK----HVLSIISRMRVAPNSRS 335

Query: 438 -----------KWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLV 482
                      K    AL ++ E    G  P     + ++  L    ++PY  ++ + + 
Sbjct: 336 YNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMH 395

Query: 483 ENLGVSADALKRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIVP 525
            N  + AD +  +   SLID F   ++  +A +L+++    GI P
Sbjct: 396 NNC-IPADIVTYN---SLIDVFCKNQHVDKAIALVKKIKEHGIQP 436



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 17/183 (9%)

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           S+   M  KGV PD   LS LI+   H G++  AF +  +                MG C
Sbjct: 88  SLSTQMESKGVKPDLFTLSILINCYCHLGQMTFAFSVFAKILK-------------MGLC 134

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            N K   +AL  ++H+ ++       T   LI  LC   Q    ++VL  ++   +  N 
Sbjct: 135 LNGK-VNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNV 193

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNE 423
           + YS ++    +   V     L S+     + P +V F  +I G C   +  +  R  NE
Sbjct: 194 VMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNE 253

Query: 424 HVL 426
            V+
Sbjct: 254 MVM 256



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/194 (22%), Positives = 73/194 (37%), Gaps = 47/194 (24%)

Query: 296 IISYSSLMGACSNAKN-WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
           I+ ++ ++      KN +   L L   M+S  +KP + T++ LI   C   Q+     V 
Sbjct: 66  IVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCYCHLGQMTFAFSVF 125

Query: 355 SDMKSLGLC---------------------PNTITYSILLVACERKDDVEVGLMLLSQAK 393
           + +  +GLC                      N +TY IL+    +       L +L Q +
Sbjct: 126 AKILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIE 185

Query: 394 EDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 452
              V  N+VM+  II G+C                        ++K  + A  +Y E IV
Sbjct: 186 GKLVNTNVVMYSTIIDGLC------------------------KDKLVTDAYGLYSEMIV 221

Query: 453 AGTIPTVEVVSKVL 466
               PTV   S ++
Sbjct: 222 KRIPPTVVTFSSLI 235


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 171/387 (44%), Gaps = 18/387 (4%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---- 89
           +L+R G + E +  LE M  +G +       +     C+S K  K+A R  +++ N    
Sbjct: 115 KLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKT-KKATRIMEILENSGAV 173

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P + T+N+L+     S + + A +VL   +   +  D   Y T++ +   SGK+    E 
Sbjct: 174 PDVITYNVLIGGYCKSGEIDKALEVL---ERMSVAPDVVTYNTILRSLCDSGKLKEAMEV 230

Query: 150 VK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +         PD + +  LI A      V +A  +L EM  +     PD +T   L+   
Sbjct: 231 LDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKK--GCKPDVVTYNVLINGI 288

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G++D A +    +  Y  K     + I +     TG W  A  +  DM +KG  P  
Sbjct: 289 CKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSV 348

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LI+F      +  A ++L++    G     +SY+ L+      K   +A+E  E 
Sbjct: 349 VTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEI 408

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S    P + T N L+TALC   ++   +E+L+ + S G  P  ITY+ ++    +   
Sbjct: 409 MVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGK 468

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
            E  + LL + +  G+ P+++ +  ++
Sbjct: 469 TEYAVELLEEMRRKGLKPDIITYSTLL 495



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 152/340 (44%), Gaps = 40/340 (11%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFN 96
           + + + LL++M +KG       Y+     +CK  + + EA +F   +P+    P + T N
Sbjct: 259 VGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGR-LDEAIKFLNNMPSYGCKPNVITHN 317

Query: 97  MLM-SVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPD 153
           +++ S+C++ +  D+E      RL+                         D + +   P 
Sbjct: 318 IILRSMCSTGRWMDAE------RLLS------------------------DMLRKGCSPS 347

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
            V FN LI    +   + RA DVL +M    H   P+ ++   L+       ++DRA E 
Sbjct: 348 VVTFNILINFLCRKRLLGRAIDVLEKMPK--HGCVPNSLSYNPLLHGFCQEKKMDRAIEY 405

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
            +++           Y   +    + G  + A  + + ++ KG  P  +  + +ID    
Sbjct: 406 LEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTK 465

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
            GK E A E+L+E + +G+   II+YS+L+          +A++++  M+ + +KP+  T
Sbjct: 466 VGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVT 525

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            NA++  LC   Q  + ++ L+ M   G  P   TY+IL+
Sbjct: 526 YNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILI 565



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 176/416 (42%), Gaps = 47/416 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN 96
           R G+  +   ++E +E  G +     Y+      CKS +  K      ++   P + T+N
Sbjct: 153 RSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERMSVAPDVVTYN 212

Query: 97  -MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-TTCAKSGKVDAMF------- 147
            +L S+C S K  E A +VL    +     D   YT LI  TC  SG   AM        
Sbjct: 213 TILRSLCDSGKLKE-AMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRK 271

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQ 206
           +  KPD V +N LI    + G +D A   L  M +  +   P+ IT   ++++ C+    
Sbjct: 272 KGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPS--YGCKPNVITHNIILRSMCSTGRW 329

Query: 207 VDRAREVYKMIHK--------YNI------------------KGTPE--------VYTIA 232
           +D  R +  M+ K        +NI                  +  P+         Y   
Sbjct: 330 MDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPL 389

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           ++   Q    + A    + M  +G  PD V  + L+      GKV+AA EIL +  ++G 
Sbjct: 390 LHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGC 449

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
           S  +I+Y++++   +     + A+EL E M+   LKP + T + L+  L    ++ + ++
Sbjct: 450 SPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIK 509

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +  DM+ L + P+ +TY+ +++   +       +  L+   E G  P    +  +I
Sbjct: 510 IFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILI 565


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 181/404 (44%), Gaps = 33/404 (8%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
           +DV + +  +NRL++Q      I+  + +   G L   K YH   +    SQK     FR
Sbjct: 41  NDVDDAVSLFNRLLQQNPTPPNIEFNKIL---GSLVKSKHYHTVLY---LSQKM---EFR 91

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             K    P L   N+L++          AF VL  + + G K +     TLI     +GK
Sbjct: 92  GIK----PNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGK 147

Query: 143 V-----------DA-------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           +           DA       + EN+ PD   F  L+    + G V  A +VLA M   +
Sbjct: 148 IHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMM--MI 205

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             + P  +T  +LM       QV++A+ ++  + +  +    + Y+I IN   +    + 
Sbjct: 206 QGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDE 265

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  +  +M  K +IP+ V  S+LID    +GK+  A +++ E  ++G    I++YSS++ 
Sbjct: 266 AMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILD 325

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
           A         A+ L   MK+  ++P + T   LI  LC   +L    +V  D+   G   
Sbjct: 326 ALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNL 385

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           N  TY++++     K   +  L LLS+ +++G IPN   ++ II
Sbjct: 386 NVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIII 429



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 167/412 (40%), Gaps = 54/412 (13%)

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
           F  +KP+ V  N LI +  Q G +  AF VL ++    +   P+ IT+  L+K     G+
Sbjct: 90  FRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGY--KPNTITLNTLIKGLCLNGK 147

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           +     +                          G  + A  +++ M  + + PD    + 
Sbjct: 148 IHDKHCI-------------------------VGKLKDAVDLFNKMILENINPDVYTFTI 182

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           L+D     G+V+ A  +L     QGI  G+++Y+SLM      K   KA  ++  M  + 
Sbjct: 183 LVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLG 242

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           + P + + + LI   C    + + ME+L +M    + PN +TYS L+    +   +   L
Sbjct: 243 VSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYAL 302

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 446
            L+ +  + G  PN+V +  I+    + +                  Q++N    L  M 
Sbjct: 303 KLVDEMHDRGQPPNIVTYSSILDALCKNH------------------QVDNAIALLTQM- 343

Query: 447 YREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF-- 504
            +   +   + T  ++ K  G  Q     D R ++ E+L V    L       +I GF  
Sbjct: 344 -KNQGIQPNMYTYTILIK--GLCQSGKLEDAR-KVFEDLLVKGHNLNVYTYTVMIQGFCD 399

Query: 505 -GEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILK 555
            G +D  A +LL +    G +P     EI ++   +K E   A+  L  +++
Sbjct: 400 KGLFD-EALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMIE 450


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 193/423 (45%), Gaps = 25/423 (5%)

Query: 18  HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H   +H ++ + + Y+  I    ++G + +   L + M   GL+   + Y +     C+ 
Sbjct: 336 HEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR- 394

Query: 74  QKAIKEAFRFF------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           +K +++ +          +V +P   T+  ++    SS D +GA+ +++ +  +G + + 
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISPY--TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452

Query: 128 KLYTTLITTCAKSGKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
            +YTTLI T  ++ +  DAM        + + PD   +N+LI    ++  +D A   L E
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVE 512

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN-CCSQ 238
           M    + + P+  T GA +     A +   A +  K + +  +     + T  IN  C +
Sbjct: 513 MVE--NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK 570

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
               E ACS Y  M  +G++ D    + L++      KV+ A EI +E + +GI+  + S
Sbjct: 571 EKVIE-ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFS 629

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y  L+   S   N QKA  +++ M    L P V   N L+   C   ++ K  E+L +M 
Sbjct: 630 YGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMS 689

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
             GL PN +TY  ++    +  D+     L  + K  G++P+  ++  ++  C R  +  
Sbjct: 690 VKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVE 749

Query: 419 RTL 421
           R +
Sbjct: 750 RAI 752



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 156/339 (46%), Gaps = 24/339 (7%)

Query: 71  CKSQKAIKEAFRFFKLVPNPTLS---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           CK +K I+    +  +V    L    T+ +LM+    +   + A ++ R ++  G+  D 
Sbjct: 568 CKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDV 627

Query: 128 KLYTTLITTCAKSG---KVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
             Y  LI   +K G   K  ++F     E + P+ +++N L+    +SG +++A ++L E
Sbjct: 628 FSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDE 687

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE--VYTIAINCC 236
           M+  V  + P+ +T   ++     +G +    E +++  +  +KG  P+  VYT  ++ C
Sbjct: 688 MS--VKGLHPNAVTYCTIIDGYCKSGDL---AEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-- 294
            +  D E A +++    KKG        +ALI++    GK E   E+L    +       
Sbjct: 743 CRLNDVERAITIFG-TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG 801

Query: 295 --GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
               ++Y+ ++       N + A EL+  M++  L PTV T  +L+       +  +   
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
           V  +  + G+ P+ I YS+++ A  ++      L+L+ Q
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQ 900



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 97/462 (20%), Positives = 183/462 (39%), Gaps = 32/462 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P   T+++L+      K  E A  +L  +   G+  D   Y+ LI    K    DA    
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334

Query: 146 MFE------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           + E      N+KP   +++  I    + G +++A  +   M A    + P      +L++
Sbjct: 335 VHEMVSHGINIKP--YMYDCCICVMSKEGVMEKAKALFDGMIA--SGLIPQAQAYASLIE 390

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                  V +  E+   + K NI  +P  Y   +     +GD + A ++  +M   G  P
Sbjct: 391 GYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRP 450

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V  + LI       +   A  +L+E K QGI+  I  Y+SL+   S AK   +A    
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M    LKP   T  A I+   +  +     + + +M+  G+ PN +  + L+    +K
Sbjct: 511 VEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK 570

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----------RYEKARTLNEHVLSF 428
           + V           + G++ +   +  ++    +           R  + + +   V S+
Sbjct: 571 EKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSY 630

Query: 429 N---SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 485
               +G  ++ N     A  ++ E +  G  P V + + +LG        +  + L++ +
Sbjct: 631 GVLINGFSKLGN--MQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEM 688

Query: 486 GVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
            V          C++IDG+ +      AF L +E    G+VP
Sbjct: 689 SVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVP 730



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/390 (19%), Positives = 175/390 (44%), Gaps = 20/390 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
            ++  R  + + +L++M+ +G+      Y++    + K+++ + EA  F  ++V N   P
Sbjct: 462 FLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKR-MDEARSFLVEMVENGLKP 520

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
              T+   +S    + +   A + ++ ++E G+  +  L T LI    K  KV       
Sbjct: 521 NAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAY 580

Query: 144 -DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
              + + +  D   +  L+    ++  VD A ++  EM  +   + PD  + G L+   +
Sbjct: 581 RSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK--GIAPDVFSYGVLINGFS 638

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G + +A  ++  + +  +     +Y + +    ++G+ E A  + D+M+ KG+ P+ V
Sbjct: 639 KLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAV 698

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
               +ID    +G +  AF +  E K +G+      Y++L+  C    + ++A+ ++   
Sbjct: 699 TYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN 758

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL----CPNTITYSILLVACER 378
           K      + +  NALI  +    +     EVL+ +          PN +TY+I++    +
Sbjct: 759 KK-GCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + ++E    L  Q +   ++P ++ +  ++
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLL 847


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 198/410 (48%), Gaps = 37/410 (9%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + G + E   L  DM  +G +     Y      +CK  + I EA    + 
Sbjct: 74  TYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGR-IDEARELIQE 132

Query: 87  VPN------PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTC 137
           +        P + T+N  L  +C  S  +E A +++R +++  L+   D   ++TLI   
Sbjct: 133 MTRKSCDVLPNIITYNSFLDGLCKQSMTAE-ACELMRSLRDGSLRVSPDTVTFSTLIDGL 191

Query: 138 AKSGKVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            K G++D   ++F+++      P+ + +NAL+    ++  ++RA  ++  M  +   V P
Sbjct: 192 CKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDK--GVTP 249

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV-------YTIAINCCSQTGD 241
           D IT   L+ A   A +VD A E   ++H    +G TP V       + I I    + G+
Sbjct: 250 DVITYSVLVDAFCKASRVDEALE---LLHGMASRGCTPNVLVPDKVTFNILIAGACKAGN 306

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
           +E A +++++M  K + PD +   ALID    AG+VEAA +IL    N G+   +++Y++
Sbjct: 307 FEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNA 366

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+     +   ++A +  E M S    P   T  +L+ ALC   +    ++++S++KS G
Sbjct: 367 LVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFG 426

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF-KCIIGM 410
             P+T+TY+IL+    +    E  + +L +    G  P+   F  C  G+
Sbjct: 427 WDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGL 476



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 173/392 (44%), Gaps = 54/392 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           PT+ T+N +++    S D     ++   + E G   D   Y TLI +  K+G +      
Sbjct: 35  PTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRL 94

Query: 144 --DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             D       P+ V ++ LI    + G +D A +++ EM  +   V P+ IT  + +   
Sbjct: 95  HGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 154

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIP 259
                   A E+ + +   +++ +P+  T +  I+   + G  + ACSV+DDM   G +P
Sbjct: 155 CKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVP 214

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---------------- 303
           + +  +AL++    A K+E A  +++   ++G++  +I+YS L+                
Sbjct: 215 NVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELL 274

Query: 304 -------------------------GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338
                                    GAC  A N+++A  L+E M +  L+P V T  ALI
Sbjct: 275 HGMASRGCTPNVLVPDKVTFNILIAGAC-KAGNFEQASALFEEMVAKNLQPDVMTFGALI 333

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
             LC   Q+    ++L  M +LG+ PN +TY+ L+    +   +E     L +    G +
Sbjct: 334 DGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCV 393

Query: 399 PNLVMFKCII-GMC-SRRYEKARTLNEHVLSF 428
           P+ + +  ++  +C + R + A  L   + SF
Sbjct: 394 PDSITYGSLVYALCRASRTDDALQLVSELKSF 425



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 171/398 (42%), Gaps = 36/398 (9%)

Query: 157 FNALITACGQSGAVDRAFDVL-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           +N ++ +  ++G   RA ++   EM  +   V P  +T   ++     +  +    E+++
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARD--GVAPTIVTYNTIINGLCKSNDLGAGMELFE 61

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            + +         Y   I+   + GD E A  ++ DM+ +G +P+ V  S LI+     G
Sbjct: 62  ELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVG 121

Query: 276 KVEAAFEILQEAKNQGISV--GIISYSSLMGACSNAKNWQKALELYEHMK--SIKLKPTV 331
           +++ A E++QE   +   V   II+Y+S +          +A EL   ++  S+++ P  
Sbjct: 122 RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDT 181

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T + LI  LC   Q+ +   V  DM + G  PN ITY+ L+    + D +E    ++  
Sbjct: 182 VTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIES 241

Query: 392 AKEDGVIPNLVMFKCII-----------------GMCSRRYEKARTLNEHVLSFN---SG 431
             + GV P+++ +  ++                 GM SR       + + V +FN   +G
Sbjct: 242 MVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKV-TFNILIAG 300

Query: 432 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGV 487
             +  N   + AL  + E +     P V     ++  L    Q+    DI + L+ NLGV
Sbjct: 301 ACKAGNFEQASAL--FEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILD-LMGNLGV 357

Query: 488 SADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
             + +  + L   +   G  +  A   LEE  S G VP
Sbjct: 358 PPNVVTYNALVHGLCKSGRIE-EACQFLEEMVSSGCVP 394


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 186/398 (46%), Gaps = 23/398 (5%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLL----DMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           +N  +++G + + ++    +  +GL+    D +K+       +C   + I  A  FF ++
Sbjct: 212 FNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKG----LCMGNQ-IGVASDFFDMM 266

Query: 88  ----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
               P+P L TF+ L++V       + AF +  L+ E G+  D  +Y+ LI    ++GK+
Sbjct: 267 VRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKL 326

Query: 144 D--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +        A+   VK D V+F++++ A  + G + +A +V   M  E   + P+ +T  
Sbjct: 327 EEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKE--GISPNVVTYS 384

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            L+      G+V  A  V+  I K  ++ +   Y+  I+   ++ +      +Y  M +K
Sbjct: 385 ILINGLCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRK 444

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G +PD V  S LI+     G ++ A     +A  +G+++    +++L+  C   K  +  
Sbjct: 445 GHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDG 504

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           L++Y  M   K+ P V T   L+  L +  +L + + +   +   G  P+ I Y  L+  
Sbjct: 505 LKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDG 564

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             +K D   GL +    + +G+ P++ ++  +I M  R
Sbjct: 565 FCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFR 602



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 175/390 (44%), Gaps = 14/390 (3%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTL 92
           +R G + + I++   M ++G+      Y      +C++ + ++    F +++     P++
Sbjct: 356 VRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSV 415

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----MFE 148
            T++ L+     S++    F +  ++   G   D  + + LI   ++ G +D      F+
Sbjct: 416 LTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQ 475

Query: 149 NVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
            VK     +  +FNALI  C +         +   M   ++ V PD +T   L+K  A  
Sbjct: 476 AVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMG--MYKVIPDVVTYTVLVKGLAEQ 533

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G++D A  ++  + K        +Y   I+   +  D      ++  M   G+ PD    
Sbjct: 534 GRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIY 593

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + LI+     G VE   E+L+E    G+   I++Y++++    + K + KA++L+E +K 
Sbjct: 594 NVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKC 653

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
            + +P   T   LI A C   ++   M + S M   G  PN +TYS L+    + ++ E 
Sbjct: 654 GRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTES 713

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
              L  +   D V PN+V +  +I G+C +
Sbjct: 714 AFELYEKMLGDRVSPNIVSYSILIDGLCKK 743



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 128/285 (44%), Gaps = 19/285 (6%)

Query: 140 SGKVDAMFENVKP-------DRVVFNALITACGQSGAVDRAFDV---LAEMNAEVHPVDP 189
           S ++D + EN +           VFN+ +    + G V++  +    L E       VD 
Sbjct: 188 SDRIDVILENYEEMCKGLGVYEFVFNSFL----KRGEVEKGLNFHRALVERGLVPKIVDC 243

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           + I  G  M       Q+  A + + M+ +         ++  IN   +    + A S+Y
Sbjct: 244 NKILKGLCM-----GNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLY 298

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           + M +KG++PD V  S LI+    AGK+E    +   A  +G+ + ++ +SS+M A    
Sbjct: 299 NLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRV 358

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
            +  KA+E+Y  M    + P V T + LI  LC   ++ +   V   +   GL P+ +TY
Sbjct: 359 GDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTY 418

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           S L+    + +++  G  L       G +P++V+   +I   SR+
Sbjct: 419 SSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQ 463



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 153/386 (39%), Gaps = 41/386 (10%)

Query: 32  YNRLIRQGRISE---CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           Y  ++R+G + +   C  L+  + R+G++D                    EA RFF    
Sbjct: 438 YGIMLRKGHVPDVVVCSMLINGLSRQGMMD--------------------EALRFFFQAV 477

Query: 89  NPTLST----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
              L+     FN L+  C   K +    ++  L+    +  D   YT L+   A+ G++D
Sbjct: 478 KRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQGRLD 537

Query: 145 ---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
              A+F     +   PD +++  LI    +         +   M +  + + PD      
Sbjct: 538 EALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQS--NGIFPDICIYNV 595

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF--ACSVYDDMTK 254
           L+      G V+   E+ + I KY ++  P++ T     C       F  A  +++ +  
Sbjct: 596 LINMFFREGCVENVLELLREIIKYGLE--PDIVTYNTMICGYCSLKIFSKAIKLFEVLKC 653

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
               P+ +  + LID     G+++ A  I      +G    I++YS L+      +N + 
Sbjct: 654 GRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTES 713

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ELYE M   ++ P + + + LI  LC    + +            L P+ I Y IL+ 
Sbjct: 714 AFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIR 773

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPN 400
              +   +   +ML      +G++P+
Sbjct: 774 GYCKVGRLAEAMMLYDHMLVNGIMPD 799



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 113/262 (43%), Gaps = 7/262 (2%)

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
           Q G     FD++           P+ +T   L+       ++D A  +Y ++ +  I   
Sbjct: 255 QIGVASDFFDMMVRSGPS-----PNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPD 309

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
             +Y+I IN   + G  E   S++     +GV  D V  S+++D     G +  A E+  
Sbjct: 310 LVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYT 369

Query: 286 EAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
               +GIS  +++YS L+ G C N +  + A  ++  +    L+P+V T ++LI   C  
Sbjct: 370 RMLKEGISPNVVTYSILINGLCRNGRVLE-ACGVFGQILKQGLEPSVLTYSSLIDGFCKS 428

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           + L     +   M   G  P+ +  S+L+    R+  ++  L    QA + G+  N  +F
Sbjct: 429 ENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLF 488

Query: 405 KCIIGMCSRRYEKARTLNEHVL 426
             +I  C R       L  ++L
Sbjct: 489 NALIDGCFRLKRTRDGLKMYIL 510



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 146/347 (42%), Gaps = 15/347 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L RQG + E +       ++GL   + +++A   + C   K  ++  + + L+     
Sbjct: 458 NGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNA-LIDGCFRLKRTRDGLKMYILMGMYKV 516

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSGKVDAM- 146
            P + T+ +L+   A     + A  +   + + G   D  +Y TLI   C K      + 
Sbjct: 517 IPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQ 576

Query: 147 ------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    + PD  ++N LI    + G V+   ++L E+    + ++PD +T   ++  
Sbjct: 577 IFKLMQSNGIFPDICIYNVLINMFFREGCVENVLELLREIIK--YGLEPDIVTYNTMICG 634

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             +     +A ++++++     +     +TI I+   + G  + A  ++  M ++G  P+
Sbjct: 635 YCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPN 694

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  S LID        E+AFE+ ++     +S  I+SYS L+         ++A   ++
Sbjct: 695 ILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQ 754

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                 L P V     LI   C   +L + M +   M   G+ P+ +
Sbjct: 755 CAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDDL 801



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/345 (20%), Positives = 143/345 (41%), Gaps = 24/345 (6%)

Query: 141 GKVDAMFENVKPD-RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           G+    F N   +   V++ L+    ++G VDRA D  A M+     V   H     ++ 
Sbjct: 126 GEFHGSFRNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSK--MGVSISHYAASEMLD 183

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              ++ ++D   E Y+ + K        VY    N   + G+ E   + +  + ++G++P
Sbjct: 184 LLIDSDRIDVILENYEEMCK-----GLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVP 238

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
             V  + ++       ++  A +        G S  ++++S+L+          +A  LY
Sbjct: 239 KIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLY 298

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M    + P +   + LI  L    +L +   + S   + G+  + + +S ++ A  R 
Sbjct: 299 NLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRV 358

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKA--------RTLNEHVLSF 428
            D+   + + ++  ++G+ PN+V +  +I G+C   R  E          + L   VL++
Sbjct: 359 GDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPSVLTY 418

Query: 429 NS---GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQ 470
           +S   G  + EN      L  Y   +  G +P V V S ++  L 
Sbjct: 419 SSLIDGFCKSENLRDGFGL--YGIMLRKGHVPDVVVCSMLINGLS 461



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 115/284 (40%), Gaps = 50/284 (17%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L  QGR+ E + L   + +KG      +Y       CK +       + FKL+ +    P
Sbjct: 530 LAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDP-ATGLQIFKLMQSNGIFP 588

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKS--GKVDAMF 147
            +  +N+L+++       E   ++LR + + GL+ D   Y T+I   C+     K   +F
Sbjct: 589 DICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLF 648

Query: 148 ENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           E +K     P+ + F  LI A  + G +D A  + + M  E  P +P+ +T   L+    
Sbjct: 649 EVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSM-LERGP-EPNILTYSCLIDGYF 706

Query: 203 NAGQVDRAREVY-KM--------IHKYNI-------KGTPEVYTIAINCC---------- 236
                + A E+Y KM        I  Y+I       KG  E  ++A  C           
Sbjct: 707 KTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVI 766

Query: 237 ---------SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
                     + G    A  +YD M   G++PD++   AL ++ 
Sbjct: 767 AYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAEYG 810


>gi|218191848|gb|EEC74275.1| hypothetical protein OsI_09511 [Oryza sativa Indica Group]
          Length = 933

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 183/406 (45%), Gaps = 22/406 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVPNP 90
           R   + E  DL E M R G+L       A    +C+  +   EA+  F+       VPN 
Sbjct: 251 RTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGR-FSEAYALFREMDKVGAVPNH 309

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD------ 144
              T+  L+   A +   +    +L  +   G+  D   YT L+    K GK D      
Sbjct: 310 V--TYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTL 367

Query: 145 --AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
             A+ +N+  + V +  LI A  ++  VD A  VL EM  E   + P+ +T  +++    
Sbjct: 368 RFALSDNLSLNGVTYTVLIDALCKAHNVDEAEQVLLEM--EEKSISPNVVTFSSVINGFV 425

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G +D+A E  +M+ +  I      Y   I+   +    + A  VY DM  +GV  ++ 
Sbjct: 426 KRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKF 485

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
            + +L++     GK+E A  + ++A   G+S+  ++Y++L+     A +   A +  + +
Sbjct: 486 IVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQEL 545

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               + P     N  I  LC   +  +   +L++M+++GL P+  TY+ ++V+  RK + 
Sbjct: 546 MDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGET 605

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKAR-TLNEHV 425
              L LL + K   + PNL+ +  ++     +   EKA+  LNE V
Sbjct: 606 AKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMV 651



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 175/417 (41%), Gaps = 54/417 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G+I E + L +D    GL  +D V +    +       +  AF+F + + +   
Sbjct: 492 NGLRQNGKIEEAMALFKDASGSGL-SLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNM 550

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
            P    +N+ ++ +C   K  E A  +L  ++  GLK D   Y T+I +  + G+     
Sbjct: 551 LPDAVVYNVFINCLCILGKFKE-AKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKAL 609

Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
               +    ++KP+ + +N L+     +GAV++A  +L EM +      P  +T   +++
Sbjct: 610 KLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSA--GFSPSSLTHRRVLQ 667

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           AC+ + ++D   ++++ +    +     VY   +      G    A  V ++M   G+ P
Sbjct: 668 ACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAP 727

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---------- 309
           D +  +ALI     +  ++ AF    +  +Q IS  I ++++L+G   +           
Sbjct: 728 DTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGTVL 787

Query: 310 -------------------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
                                     N  +A+ LY  M      P VST NALI+     
Sbjct: 788 IEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFTKA 847

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVIPN 400
             + +  E+  DM+  G+ P + TY IL+    R ++  EV    L   KE G  P+
Sbjct: 848 GMMTQAKELFKDMQKRGVHPTSCTYDILVSGWSRIRNGTEVK-KCLKDMKEKGFSPS 903



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 198/461 (42%), Gaps = 34/461 (7%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           PT   +N+L+   A+  D   A  VL  + + G+  D     TL+    ++G+VDA    
Sbjct: 101 PTTVAYNILL---AALSDHAHAPAVLAEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAAL 157

Query: 150 VKP-------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                     D + +N LI    + G    A  V   M A+  P+D   +    L+    
Sbjct: 158 ADRGGGIHALDVIGWNTLIAGYCRVGDTPAALSVADRMTAQGLPMDV--VGYNTLVAGFC 215

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AGQVD AR V  M+ +  +      YT  I    +T   E A  +Y+ M + GV+ D V
Sbjct: 216 RAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVV 275

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
            LSAL+      G+   A+ + +E    G     ++Y +L+ + + A   ++ L L   M
Sbjct: 276 TLSALVAGLCRDGRFSEAYALFREMDKVGAVPNHVTYCTLIDSLAKAGRGKELLSLLGEM 335

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            S  +   + T  AL+  L    +  +  + L    S  L  N +TY++L+ A  +  +V
Sbjct: 336 VSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSLNGVTYTVLIDALCKAHNV 395

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR----------RYEKARTLNEHVLSFNS- 430
           +    +L + +E  + PN+V F  +I G   R          R  K R +N +V+++ + 
Sbjct: 396 DEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTL 455

Query: 431 --GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE--RLVENLG 486
             G  + + +    AL VY + +  G      +V  ++  L+   N  I E   L ++  
Sbjct: 456 IDGFFKFQGQ--DAALEVYHDMLCEGVEVNKFIVDSLVNGLR--QNGKIEEAMALFKDAS 511

Query: 487 VSADALKRSNLCSLIDG-FGEYD-PRAFSLLEEAASFGIVP 525
            S  +L   N  +LIDG F   D P AF   +E     ++P
Sbjct: 512 GSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLP 552



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/458 (20%), Positives = 180/458 (39%), Gaps = 83/458 (18%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRFFKLVPN 89
           + L + GR  E + LL +M  +G++ MD V +    +    Q     +K+  RF  L  N
Sbjct: 317 DSLAKAGRGKELLSLLGEMVSRGVV-MDLVTYTALMDWLGKQGKTDEVKDTLRF-ALSDN 374

Query: 90  PTLS--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            +L+  T+ +L+     + + + A QVL  ++E  +  +   ++++I    K G +D   
Sbjct: 375 LSLNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKAT 434

Query: 148 E--------NVKPDRVVFNALITAC----GQSGAVDRAFDVLAE---------------- 179
           E         + P+ V +  LI       GQ  A++   D+L E                
Sbjct: 435 EYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVEVNKFIVDSLVNGL 494

Query: 180 -------------MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
                         +A    +  DH+    L+     AG +  A +  + +   N+    
Sbjct: 495 RQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDA 554

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
            VY + INC    G ++ A S+  +M   G+ PD+   + +I      G+   A ++L E
Sbjct: 555 VVYNVFINCLCILGKFKEAKSILTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKLLHE 614

Query: 287 AKNQGISVGIISYSSLMG-----------------------------------ACSNAKN 311
            K   I   +I+Y++L+                                    ACS ++ 
Sbjct: 615 MKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQSRR 674

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
               L+++E M +  L   ++  N L+  LC      K   VL +M   G+ P+TIT++ 
Sbjct: 675 LDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNA 734

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           L++   +   ++      +Q     + PN+  F  ++G
Sbjct: 735 LILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLG 772



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/376 (20%), Positives = 157/376 (41%), Gaps = 15/376 (3%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMS 100
           +++  DM  +G+ +++K       N  +    I+EA   FK      LS     +  L+ 
Sbjct: 469 LEVYHDMLCEGV-EVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLID 527

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC--------AKSGKVDAMFENVKP 152
               + D   AF+  + + +  +  D  +Y   I           AKS   +     +KP
Sbjct: 528 GLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCILGKFKEAKSILTEMRNMGLKP 587

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D+  +N +I +  + G   +A  +L EM  ++  + P+ IT   L+      G V++A+ 
Sbjct: 588 DQSTYNTMIVSHCRKGETAKALKLLHEM--KMSSIKPNLITYNTLVAGLFGTGAVEKAKY 645

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           +   +       +   +   +  CSQ+   +    +++ M   G+  D    + L+    
Sbjct: 646 LLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLC 705

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
           + G    A  +L+E    GI+   I++++L+     + +   A   Y  M    + P ++
Sbjct: 706 YHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIA 765

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N L+  L    ++ +   VL +M+  GL PN +TY IL+    ++ +    + L  + 
Sbjct: 766 TFNTLLGGLESVGRIGEAGTVLIEMEKSGLEPNNLTYDILVTGHGKQSNKVEAMRLYCEM 825

Query: 393 KEDGVIPNLVMFKCII 408
              G +P +  +  +I
Sbjct: 826 VGKGFVPKVSTYNALI 841


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 183/389 (47%), Gaps = 49/389 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L ++GR++E  DLL DM+ KGL                                 P  +T
Sbjct: 242 LCKKGRLNEARDLLLDMKNKGLF--------------------------------PNRTT 269

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM-----FE 148
           FN+L+  C      + A  V+ L+ +  +  D   Y  +I+   K G++ +AM      E
Sbjct: 270 FNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEME 329

Query: 149 NVK--PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
           N+K  PD V +N LI  C + G+ +  F ++ EM  E   + P+ +T   ++K     G+
Sbjct: 330 NLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEM--EGRGMKPNSVTYNVMVKWFVKKGK 387

Query: 207 VDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           +D   EV K + K    G  P++  Y   I+   + G  + A  + D+M +KG+  D+V 
Sbjct: 388 MD---EVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVT 444

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
           L+ ++       K++ A ++L  A+ +G  V  +SY +L+      +   +AL L++ MK
Sbjct: 445 LNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMK 504

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
             ++ P++ T N++I  LC   +  + ++ L ++   GL P+ ITY+ ++    ++  VE
Sbjct: 505 EKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVE 564

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
                 ++  E    P++V    ++ G+C
Sbjct: 565 KAFQFHNKMVEKNFKPDVVTCNTLLCGLC 593



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 173/386 (44%), Gaps = 17/386 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R G + E  +++E M +  ++     Y+      CK Q  I EA R  + + N    P +
Sbjct: 279 RLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCK-QGRIAEAMRLREEMENLKLSPDV 337

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK- 151
            T+N L++ C     SE  F+++  ++  G+K +   Y  ++    K GK+D + + V+ 
Sbjct: 338 VTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRK 397

Query: 152 -------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                  PD V +N LI+   + G +D AF ++ EM  +   +  D +T+  +++A    
Sbjct: 398 MEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRK--GLKMDDVTLNTMLRALCRE 455

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
            ++D A ++     +         Y   I    +      A  ++D+M +K +IP  +  
Sbjct: 456 RKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITY 515

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           +++I      GK   A + L E    G+    I+Y++++         +KA + +  M  
Sbjct: 516 NSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVE 575

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVE 383
              KP V T N L+  LC    L K +++ +   S G   + ++Y +I+L  C+ K   E
Sbjct: 576 KNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGE 635

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIG 409
               LL + +E  + P+   +  I+G
Sbjct: 636 -AFDLLEEMEEKKLGPDCYTYNAILG 660



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 179/391 (45%), Gaps = 23/391 (5%)

Query: 39  GRISECIDLLEDMERKG----LLDMDKVYHARF-FNVCKSQKAIKEAFR-FFKLVPNPTL 92
           GR  +   +   M+R G    LL  + + +A   F    S +  K  F  F K+      
Sbjct: 138 GRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINT 197

Query: 93  STFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--------V 143
           ++FN+L+   C  ++  E A +VL  +++ G   D   Y T++    K G+        +
Sbjct: 198 NSFNILIHGSCMENRFGE-AIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLL 256

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           D   + + P+R  FN L+  C + G +  A +V+  M+   + V PD  T   ++     
Sbjct: 257 DMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQ--NSVVPDAWTYNVMISGFCK 314

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            G++  A  + + +   N+K +P+V  Y   IN C + G  E    + ++M  +G+ P+ 
Sbjct: 315 QGRIAEAMRLREEME--NLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNS 372

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + ++ +    GK++   + +++ +  G    I++Y++L+          +A  L + 
Sbjct: 373 VTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDE 432

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    LK    T+N ++ ALC   +L +  ++L   +  G   + ++Y  L++   + + 
Sbjct: 433 MGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEK 492

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
               L L  + KE  +IP+++ +  +I G+C
Sbjct: 493 ASQALRLWDEMKEKEIIPSIITYNSMIAGLC 523



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/386 (23%), Positives = 162/386 (41%), Gaps = 54/386 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    +QGRI+E + L E+ME   L   D V +    N C    + +E F+  + 
Sbjct: 304 TYNVMISGFCKQGRIAEAMRLREEMENLKL-SPDVVTYNTLINGCFEHGSSEEGFKLIEE 362

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T+N+++         +   + +R ++E+G   D   Y TLI+   K GK
Sbjct: 363 MEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGK 422

Query: 143 VDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +D  F        + +K D V  N ++ A  +   +D A D+L       + VD   ++ 
Sbjct: 423 MDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVD--EVSY 480

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           G L+       +  +A  ++  + +  I  +   Y   I    Q G    A    D++ +
Sbjct: 481 GTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLE 540

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFE----------------------------ILQE 286
            G++PDE+  + +I      G+VE AF+                            +L++
Sbjct: 541 SGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEK 600

Query: 287 AK-------NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A        ++G  V  +SY++++ +    K + +A +L E M+  KL P   T NA++ 
Sbjct: 601 ALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILG 660

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPN 365
            L D  ++    E +S +   G   N
Sbjct: 661 GLTDAGRMKDAEEFISKIAEKGKSEN 686



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 109/249 (43%), Gaps = 8/249 (3%)

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA---NAGQVDRAREVYKMIHK 219
           ACG+     + F+ +  +  +     P  +T   L+ A     ++  +  ++ V+    K
Sbjct: 136 ACGRPHQAAQIFNRMKRLGMQ-----PTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIK 190

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
             +K     + I I+       +  A  V   M   G  PD +  + ++D     G++  
Sbjct: 191 IGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNE 250

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A ++L + KN+G+     +++ L+  C      ++A  + E M    + P   T N +I+
Sbjct: 251 ARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMIS 310

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
             C   ++ + M +  +M++L L P+ +TY+ L+  C      E G  L+ + +  G+ P
Sbjct: 311 GFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKP 370

Query: 400 NLVMFKCII 408
           N V +  ++
Sbjct: 371 NSVTYNVMV 379



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 105/258 (40%), Gaps = 32/258 (12%)

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGA-----CSNAKNWQKALELYEHMKSIKLKP 329
           G+   A +I    K  G+   +++ ++L+ A      S++    KA+  +     I +K 
Sbjct: 138 GRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAV--FTDFIKIGVKI 195

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
             ++ N LI   C  ++  + + VL  M+  G  P+ ITY+ +L    +K  +     LL
Sbjct: 196 NTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLL 255

Query: 390 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 449
              K  G+ PN   F  ++  C R        N  V+   S    + + WT         
Sbjct: 256 LDMKNKGLFPNRTTFNILVVGCCRLGWLKEAAN--VIELMSQNSVVPDAWT-------YN 306

Query: 450 AIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEY-- 507
            +++G      +   +           +RE + ENL +S D +  +   +LI+G  E+  
Sbjct: 307 VMISGFCKQGRIAEAM----------RLREEM-ENLKLSPDVVTYN---TLINGCFEHGS 352

Query: 508 DPRAFSLLEEAASFGIVP 525
               F L+EE    G+ P
Sbjct: 353 SEEGFKLIEEMEGRGMKP 370


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 177/407 (43%), Gaps = 19/407 (4%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  VS  + SYN LIR     G +   +   E+MER   L     Y+      CK  K I
Sbjct: 196 ASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCK-LKRI 254

Query: 78  KEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            EAF+  + +      P L T+NM+++        E    VL  +   G   D   Y TL
Sbjct: 255 DEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTL 314

Query: 134 ITTCAKSGKV-------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +    K G           M  N + PD V + +LI    ++G ++RA +   +M+  V 
Sbjct: 315 VNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMH--VR 372

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + P+ +T  +L+   +  G +D A  ++  + +     T   Y   +N    +G  E A
Sbjct: 373 GLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEA 432

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +   M  KG+ PD V  S +I       +++ AF++  E   +G+S   I+YSSL+  
Sbjct: 433 IGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQG 492

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
               +   +A +L++ M +  L P   T  +LI   C    L + + +  +M   G  P+
Sbjct: 493 LCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPD 552

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           T+TY++L+    ++        LL +   D  IPN + +  +I  CS
Sbjct: 553 TVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCS 599



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/339 (20%), Positives = 146/339 (43%), Gaps = 10/339 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF------ 147
           ++N+L+    ++ + E   +    ++      +   Y T+I    K  ++D  F      
Sbjct: 205 SYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSM 264

Query: 148 --ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             E ++P+ + +N +I    + G ++    VLAEM+ +     PD +T   L+      G
Sbjct: 265 GLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRK--GFAPDGVTYNTLVNGYCKVG 322

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
              +A  ++  + +  +      YT  IN   + G+   A   +D M  +G+ P+ V  +
Sbjct: 323 NFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYT 382

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           +LI+     G ++ A+ I  E    G    I++Y++L+     +   ++A+ L   M+  
Sbjct: 383 SLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGK 442

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            L P V + + +I   C   +L +  ++ ++M   G+ P+ ITYS L+     +  +   
Sbjct: 443 GLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEA 502

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 424
             L  +     ++P+   +  +I    +  +    LN H
Sbjct: 503 CDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLH 541



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 166/403 (41%), Gaps = 61/403 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L R GRI E   +L +M+RKG       Y+      CK     +      +++ N   
Sbjct: 281 NGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLP 340

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T+  L++    + +   A +    +   GL+ +   YT+LI   ++ G +D  +  
Sbjct: 341 PDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRI 400

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLA----------------------- 178
                     P  V +NAL+     SG ++ A  +L                        
Sbjct: 401 WDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCR 460

Query: 179 --------EMNAEV--HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                   +MNAE+    V PD IT  +L++      +++ A ++++ +   ++      
Sbjct: 461 YQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFT 520

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEA 287
           YT  IN   + GD   A +++D+M KKG +PD V  + LI+     A   EA   +L+  
Sbjct: 521 YTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLF 580

Query: 288 KNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPTVS 332
            ++ I  GI +Y +L+ +CS+ +                  +A +++E M     KP  +
Sbjct: 581 YDESIPNGI-TYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEA 639

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             N +I   C    + K  ++  +M   G  P+T+T   L+ A
Sbjct: 640 VYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKA 682



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/270 (24%), Positives = 114/270 (42%), Gaps = 36/270 (13%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN L+      GR+ E I LL  ME KGL      Y       C+ Q+ +  AF+    
Sbjct: 415 TYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQE-LDRAFQMNAE 473

Query: 85  ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K V    ++  +++  +C   + +E A  + + +    L  D   YT+LI    K G
Sbjct: 474 MVEKGVSPDAITYSSLIQGLCEQRRLNE-ACDLFQEMLNKSLLPDEFTYTSLINGYCKEG 532

Query: 142 KVDAMF----ENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            ++       E +K    PD V +N LI    +      A  +L ++  +     P+ IT
Sbjct: 533 DLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYD--ESIPNGIT 590

Query: 194 IGALMKACAN---------------AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
              L+++C++                G ++ A +V++ + K N K    VY + I+   +
Sbjct: 591 YDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCR 650

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            G+   A  +Y +M   G IP  V + AL+
Sbjct: 651 DGNVHKAHKLYKEMVDFGFIPHTVTIIALV 680


>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Brachypodium distachyon]
          Length = 821

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 186/396 (46%), Gaps = 21/396 (5%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I      G   + ++L + M R G+   D V H    +  K+     +A  +F++
Sbjct: 227 TYNNVINACGAAGNWKKALELCKKMTRNGV-GPDLVTHNIVLSAFKNGSQYSKAIAYFEM 285

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTCAKS 140
           +      P   T N+++           A ++L  ++E   +   D   YT+++ +    
Sbjct: 286 MKGANIAPDTFTLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVC 345

Query: 141 GKVD---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           GKV+   A+F     E VKP+ V +NAL+ A    G    A  +   +    + + PD +
Sbjct: 346 GKVEDCKAVFDMMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQ--NGLRPDVV 403

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +   L+ A   +GQ ++ARE +K + K + +     Y   I+     G ++ A S+  +M
Sbjct: 404 SYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEM 463

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            K G+ PD V +S L+   G   ++     IL+ AK++GI + I+ Y+S +G+  N  ++
Sbjct: 464 EKDGIPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDY 523

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            KALELY  M +  + P   T N LI+ LC   +  ++++   DM  L +      YS L
Sbjct: 524 GKALELYAVMMASNVNPDAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSL 583

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + +  ++  +       S  KE G +P+++ +  +I
Sbjct: 584 ICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMI 619



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 170/410 (41%), Gaps = 21/410 (5%)

Query: 35  LIRQGRISECIDLLEDMERK------GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           L++ G+  E I+LL  M  K       ++    + H+ +  VC   +  K  F       
Sbjct: 305 LVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYY--VCGKVEDCKAVFDMMVAEG 362

Query: 89  -NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
             P + ++N L+   AS      A  + +L+++ GL+ D   YTTL+    +SG+ +   
Sbjct: 363 VKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAR 422

Query: 148 ENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           E  K        P+ V +NALI A G +G    A  +L EM  +  P  PD ++I  L+ 
Sbjct: 423 EAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIP--PDVVSISTLLT 480

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           AC    Q+ +   + +      IK     Y   I      GD+  A  +Y  M    V P
Sbjct: 481 ACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMASNVNP 540

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  + LI      GK   + +  ++  +  I +    YSSL+ +        +A   +
Sbjct: 541 DAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTEAESTF 600

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             MK     P V T  A+I A  D        ++  +M+   + P+ I  S L+ A  R 
Sbjct: 601 SSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLMEALNRG 660

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLS 427
              E  L L+   KE  +  N   +  II  CS  R ++ A  + EH+ S
Sbjct: 661 SQHERVLQLMELMKEKCIPLNQKAYFEIIASCSMLRDWKTASEIIEHLDS 710



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 171/376 (45%), Gaps = 29/376 (7%)

Query: 81  FRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           FR+ K   N       + M++ + A     + A  +   +QE   K D  +Y +LI   A
Sbjct: 142 FRWMKNQENYCARNDIYGMMIRLHARHSQIDQARGLFFEMQEWRCKPDADIYNSLIHAHA 201

Query: 139 KSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           ++G+         D +   + P R  +N +I ACG +G   +A ++  +M    + V PD
Sbjct: 202 RAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACGAAGNWKKALELCKKMTR--NGVGPD 259

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSV 248
            +T   ++ A  N  Q  +A   ++M+   NI   P+ +T  I I+C  + G +  A  +
Sbjct: 260 LVTHNIVLSAFKNGSQYSKAIAYFEMMKGANI--APDTFTLNIVIHCLVKDGQYGEAIEL 317

Query: 249 YDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            + M +K     PD V  ++++      GKVE    +      +G+   I+SY++L+GA 
Sbjct: 318 LNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFDMMVAEGVKPNIVSYNALLGAY 377

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
           ++      AL +++ +K   L+P V +   L+ A     Q  K  E   +M+     PN 
Sbjct: 378 ASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKNSCRPNI 437

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----------RY 415
           ++Y+ L+ A       +  + LL + ++DG+ P++V    ++  C R             
Sbjct: 438 VSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKIDTILEA 497

Query: 416 EKARTLNEHVLSFNSG 431
            K+R +  +++ +NSG
Sbjct: 498 AKSRGIKLNIVCYNSG 513



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 133/286 (46%), Gaps = 6/286 (2%)

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           R  F  LI     +G++  A  V   M N E +    D    G +++  A   Q+D+AR 
Sbjct: 119 RRNFPLLIREITFAGSLQHAVHVFRWMKNQENYCARND--IYGMMIRLHARHSQIDQARG 176

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           ++  + ++  K   ++Y   I+  ++ G W +A ++ DDM +  + P     + +I+  G
Sbjct: 177 LFFEMQEWRCKPDADIYNSLIHAHARAGQWRWAINIMDDMLRAAIPPSRTTYNNVINACG 236

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            AG  + A E+ ++    G+   +++++ ++ A  N   + KA+  +E MK   + P   
Sbjct: 237 AAGNWKKALELCKKMTRNGVGPDLVTHNIVLSAFKNGSQYSKAIAYFEMMKGANIAPDTF 296

Query: 333 TMNALITALCDGDQLPKTMEVLSDM--KSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           T+N +I  L    Q  + +E+L+ M  K     P+ +TY+ ++ +      VE    +  
Sbjct: 297 TLNIVIHCLVKDGQYGEAIELLNSMREKRTQCPPDVVTYTSIMHSYYVCGKVEDCKAVFD 356

Query: 391 QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN-EHVLSFNSGRPQI 435
               +GV PN+V +  ++G  + R   A  L    +L  N  RP +
Sbjct: 357 MMVAEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRPDV 402



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 101/443 (22%), Positives = 192/443 (43%), Gaps = 64/443 (14%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC----KS 73
           A  V   + SYN L+     +G  ++ + + + +++ GL   D V +    N      + 
Sbjct: 360 AEGVKPNIVSYNALLGAYASRGMHADALGIFKLLKQNGLRP-DVVSYTTLLNAYGRSGQP 418

Query: 74  QKAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           +KA +EAF+   K    P + ++N L+    S+   + A  +L  +++ G+  D    +T
Sbjct: 419 EKA-REAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSIST 477

Query: 133 LITTCAKS---GKVDAMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           L+T C +     K+D + E      +K + V +N+ I +    G   +A ++ A M A  
Sbjct: 478 LLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGSYLNFGDYGKALELYAVMMAS- 536

Query: 185 HPVDPDHITIGALMKACANAGQ---------------VDRAREVYK-MIHKYNIKGT--- 225
             V+PD +T   L+      G+               +   +EVY  +I  Y  +G    
Sbjct: 537 -NVNPDAVTYNILISGLCKVGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQGKLTE 595

Query: 226 --------------PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
                         P+V  YT  I   +  G W  A  ++ +M    V PD +  S+L++
Sbjct: 596 AESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFKEMEGNTVQPDAIICSSLME 655

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                 + E   ++++  K + I +   +Y  ++ +CS  ++W+ A E+ EH+ S     
Sbjct: 656 ALNRGSQHERVLQLMELMKEKCIPLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLSSI 715

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTITYSILLVACERKDDVEVG 385
           +V T+N L+T L    +    M++   M S    +G+   T+    LL   + +  +EV 
Sbjct: 716 SVGTLNHLLTFLGKCGKTECMMKLFYKMMSSCSTVGVSTYTVLLRNLLAVGKWRKYIEV- 774

Query: 386 LMLLSQAKEDGVIPNLVMFKCII 408
              L   ++ GV P L M++ ++
Sbjct: 775 ---LQWMEDAGVSPTLYMYQNVL 794


>gi|159465707|ref|XP_001691064.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
 gi|158279750|gb|EDP05510.1| predicted mitochondrial protein [Chlamydomonas reinhardtii]
          Length = 630

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 140/324 (43%), Gaps = 47/324 (14%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           ++   +S+C  S+D + A +++  +++  ++ +   +T L+  C K GK+    E     
Sbjct: 70  SYTATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNM 129

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANA 204
              N  P+ V +N L+   G+ G  +RA  VL  M  E V PV                 
Sbjct: 130 RAANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPV----------------- 172

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
                       +  YN         IA N C+Q  +   A +VY  +   G  P+    
Sbjct: 173 ------------LRTYN------TLIIACNMCNQPRE---ALAVYQRLLSDGYTPNSTTY 211

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           +ALI   G   ++  A E+ QE   Q +   +I+YSSL+ AC  A  W+ AL ++  M+ 
Sbjct: 212 NALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLISACEKAGQWETALRIFNEMQQ 271

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
               P   T N+L+TA   G Q  K  EV   M + G  P+ +TY+ L+ A ER    + 
Sbjct: 272 DNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAHGCTPDVVTYTALISAYERGGQWQK 331

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII 408
            L    +    G  P+ +++  II
Sbjct: 332 ALQAFGKMCMQGCKPDAIVYNAII 355



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 130/256 (50%), Gaps = 5/256 (1%)

Query: 174 FDVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
           FD L   N E  P+    D  +  A +  C  +  VDRA E+   + + NI+     +T 
Sbjct: 50  FDWLRSAN-ERSPLRQLCDVYSYTATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTA 108

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            +N C + G    A  +Y++M     +P+ V  + L+D  G  G+ E A  +L   K +G
Sbjct: 109 LMNVCIKCGKLPLALEIYNNMRAANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEG 168

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           +   + +Y++L+ AC+     ++AL +Y+ + S    P  +T NALI+A     QL K +
Sbjct: 169 VEPVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKAL 228

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           EV  +M    +  + ITYS L+ ACE+    E  L + ++ ++D  +PN V +  ++  C
Sbjct: 229 EVYQEMLRQNMERSVITYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTAC 288

Query: 412 SR--RYEKARTLNEHV 425
           ++  ++EKA  + E +
Sbjct: 289 AQGGQWEKATEVFEQM 304



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 121/268 (45%), Gaps = 4/268 (1%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D   + A I+ C  S  VDRA +++ EM      ++ +  T  ALM  C   G++  A E
Sbjct: 67  DVYSYTATISLCIYSQDVDRAMELMNEMRQ--RNIERNVHTFTALMNVCIKCGKLPLALE 124

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           +Y  +   N       Y   ++   + G WE A  V D M ++GV P     + LI    
Sbjct: 125 IYNNMRAANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACN 184

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
              +   A  + Q   + G +    +Y++L+ A        KALE+Y+ M    ++ +V 
Sbjct: 185 MCNQPREALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVI 244

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T ++LI+A     Q    + + ++M+     PNT+TY+ L+ AC +    E    +  Q 
Sbjct: 245 TYSSLISACEKAGQWETALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQM 304

Query: 393 KEDGVIPNLVMFKCIIGMCSR--RYEKA 418
              G  P++V +  +I    R  +++KA
Sbjct: 305 TAHGCTPDVVTYTALISAYERGGQWQKA 332



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 17/215 (7%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P L T+N L+  C        A  V + +   G   +   Y  LI+   K+ ++    E 
Sbjct: 171 PVLRTYNTLIIACNMCNQPREALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEV 230

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  N++   + +++LI+AC ++G  + A  +  EM  +     P+ +T  +L+ AC
Sbjct: 231 YQEMLRQNMERSVITYSSLISACEKAGQWETALRIFNEMQQD--NCVPNTVTYNSLVTAC 288

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A  GQ ++A EV++ +  +    TP+V  YT  I+   + G W+ A   +  M  +G  P
Sbjct: 289 AQGGQWEKATEVFEQMTAHGC--TPDVVTYTALISAYERGGQWQKALQAFGKMCMQGCKP 346

Query: 260 DEVFLSALIDFAGHAGKVEA---AFEILQEAKNQG 291
           D +  +A+ID     G + A   A ++   A  QG
Sbjct: 347 DAIVYNAIIDTLWETGIIWAQGRALQLFLTAVQQG 381



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 111/260 (42%), Gaps = 19/260 (7%)

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           +A I    ++  V+ A E++ E + + I   + ++++LM  C        ALE+Y +M++
Sbjct: 72  TATISLCIYSQDVDRAMELMNEMRQRNIERNVHTFTALMNVCIKCGKLPLALEIYNNMRA 131

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
               P V T N L+       +  + + VL  MK  G+ P   TY+ L++AC   +    
Sbjct: 132 ANCMPNVVTYNTLVDVYGKLGRWERAIHVLDLMKQEGVEPVLRTYNTLIIACNMCNQPRE 191

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNEHVLSFNSGRPQIE------ 436
            L +  +   DG  PN   +  +I    +  +  KA  + + +L  N  R  I       
Sbjct: 192 ALAVYQRLLSDGYTPNSTTYNALISAYGKTMQLGKALEVYQEMLRQNMERSVITYSSLIS 251

Query: 437 -----NKWTSLALMVYREAIVAGTIP-TVEVVSKVLGCL---QLPYNADIRERLVENLGV 487
                 +W + AL ++ E      +P TV   S V  C    Q     ++ E++  + G 
Sbjct: 252 ACEKAGQWET-ALRIFNEMQQDNCVPNTVTYNSLVTACAQGGQWEKATEVFEQMTAH-GC 309

Query: 488 SADALKRSNLCSLIDGFGEY 507
           + D +  + L S  +  G++
Sbjct: 310 TPDVVTYTALISAYERGGQW 329


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 161/341 (47%), Gaps = 10/341 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P+  ++  +++     KD   A ++L  +  +GLK +  +Y+TLI   A  G++      
Sbjct: 148 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRL 207

Query: 144 -DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M    V PD   +NA+I+   ++G ++ A   L E+      + PD +T GA +   
Sbjct: 208 LDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQG--RGLKPDAVTFGAFILGY 265

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           +  G++  A + +  +  + +     +YT+ IN   + G+   A S++  +   GV+PD 
Sbjct: 266 SKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDV 325

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              SA I      G+V+ A ++  E K +G+   + +YSSL+         +KA EL++ 
Sbjct: 326 QTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDE 385

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    + P +   NAL+  LC    + +  ++   M   GL P+++TYS ++    + ++
Sbjct: 386 MCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSEN 445

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
           V     L  +    GV P+  ++  ++  C +  +  + +N
Sbjct: 446 VAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 486



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 192/407 (47%), Gaps = 22/407 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----KAIKEAFRFFKLVPNPT 91
           R+  +   ++LL++ME++ L+     Y A    +C  +       + E   F  L PN  
Sbjct: 127 REHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPN-- 184

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----MF 147
           +  ++ L+   AS    E A ++L  +  +G+  D   Y  +I+  +K+GK++     + 
Sbjct: 185 VVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLL 244

Query: 148 E----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           E     +KPD V F A I    ++G +  A     EM    H + P++     L+     
Sbjct: 245 EIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLD--HGLMPNNPLYTVLINGHFK 302

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           AG +  A  +++ +H   +   P+V T +  I+   + G  + A  V+ ++ +KG++PD 
Sbjct: 303 AGNLMEALSIFRHLHALGV--LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDV 360

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              S+LI      G+VE AFE+  E   +GI+  I  Y++L+     + + Q+A +L++ 
Sbjct: 361 FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDG 420

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    L+P   T + +I   C  + + +   +  +M S G+ P++  Y+ L+  C ++ D
Sbjct: 421 MPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGD 480

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMC-SRRYEKARTLNEHVLS 427
           +E  + L  +  + G    L     I G C S + ++A  L + +++
Sbjct: 481 MEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIA 527



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 159/363 (43%), Gaps = 33/363 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L++ GR+ E + +  +++ KGL+     Y +     CK Q  +++AF     +      P
Sbjct: 335 LLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCK-QGEVEKAFELHDEMCLKGIAP 393

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
            +  +N L+     S D + A ++   + E GL+ D   Y+T+I    KS  V   F   
Sbjct: 394 NIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLF 453

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                + V+P   V+NAL+  C + G +++A ++  EM   +       ++   L+    
Sbjct: 454 HEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREM---LQKGFATTLSFNTLIDGYC 510

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA----------------- 245
            + ++  A ++++ +    I      YT  I+   + G  E A                 
Sbjct: 511 KSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTV 570

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
            ++++ M  KGV PDEV    +I        +  AF++  E   +G+      +  L+ A
Sbjct: 571 FALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITA 630

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
               ++  +A +L + M  + LKP+++  + L+ +  +  ++ +   V   +KSLGL P+
Sbjct: 631 LCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 690

Query: 366 TIT 368
           T T
Sbjct: 691 TTT 693



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 91/424 (21%), Positives = 182/424 (42%), Gaps = 43/424 (10%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK----LVPNPTL 92
           + G+++E     ++M   GL+  + +Y        K+   + EA   F+    L   P +
Sbjct: 267 KTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGN-LMEALSIFRHLHALGVLPDV 325

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---- 148
            T +  +     +   + A +V   ++E GL  D   Y++LI+   K G+V+  FE    
Sbjct: 326 QTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDE 385

Query: 149 ----NVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKAC 201
                + P+  ++NAL+    +SG + RA   FD + E   E     PD +T   ++   
Sbjct: 386 MCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLE-----PDSVTYSTMIDGY 440

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             +  V  A  ++  +    ++    VY   ++ C + GD E A +++ +M +KG     
Sbjct: 441 CKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL 500

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA------ 315
            F + LID    + K++ A ++ QE   + I    ++Y++++     A   ++A      
Sbjct: 501 SF-NTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKE 559

Query: 316 -----------LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                        L+E M +  +KP   T   +I A C  D L +  ++  ++   G+  
Sbjct: 560 MQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLT 619

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 424
               + +L+ A  +++D+     LL +  E G+ P+L     ++    R + +A  ++E 
Sbjct: 620 KGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLV----RSFHEAGKMDEA 675

Query: 425 VLSF 428
              F
Sbjct: 676 TRVF 679



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 170/397 (42%), Gaps = 33/397 (8%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   + G + E + +   +   G+L   +   A    + K+ + ++EA + F  +     
Sbjct: 298 NGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGR-VQEALKVFSELKEKGL 356

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P + T++ L+S      + E AF++   +   G+  +  +Y  L+    KSG +     
Sbjct: 357 VPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARK 416

Query: 144 --DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             D M E  ++PD V ++ +I    +S  V  AF +  EM ++   V P      AL+  
Sbjct: 417 LFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSK--GVQPHSFVYNALVHG 474

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           C   G +++A  +++ + +     T    T+    C      E A  ++ +M  K ++PD
Sbjct: 475 CCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQE-ASQLFQEMIAKQIMPD 533

Query: 261 EVFLSALIDFAGHAGKVEAA-----------------FEILQEAKNQGISVGIISYSSLM 303
            V  + +ID+   AGK+E A                 F + ++   +G+    ++Y  ++
Sbjct: 534 HVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVI 593

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
            A     N  +A +L + +    +    +  + LITALC  + L +  ++L +M  LGL 
Sbjct: 594 YAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLK 653

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           P+    S L+ +      ++    +    K  G++P+
Sbjct: 654 PSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVPD 690



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 2/234 (0%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+  T   +      A +++ A+  ++ + K  +K      +  I+   + GD +    +
Sbjct: 8   PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 67

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            D M   G+  + +  + LI      GK+E A EIL+     G      ++  L+     
Sbjct: 68  KDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCR 127

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
             N  +ALEL + M+   L P+  +  A+I  LC    L    ++L  M   GL PN + 
Sbjct: 128 EHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVV 187

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKART 420
           YS L++    +  +E    LL      GV P++  +  II   S+  + E+A T
Sbjct: 188 YSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAST 241



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 144/362 (39%), Gaps = 32/362 (8%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + PD+    AL+      G +D    +  ++    I      Y + I+   + G  E A 
Sbjct: 41  LKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAA 100

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +   M   G  P+      LI+       +  A E+L E + + +    +SY +++   
Sbjct: 101 EILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGL 160

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            + K+   A +L E M    LKP V   + LI       ++ +   +L  M   G+ P+ 
Sbjct: 161 CHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDI 220

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNE 423
             Y+ ++    +   +E     L + +  G+ P+ V F   I       +  E A+  +E
Sbjct: 221 FCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDE 280

Query: 424 ---HVLSFN--------SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQL 471
              H L  N        +G  +  N   +L+  ++R     G +P V+  S  + G L+ 
Sbjct: 281 MLDHGLMPNNPLYTVLINGHFKAGNLMEALS--IFRHLHALGVLPDVQTCSAFIHGLLK- 337

Query: 472 PYNADIRERL-----VENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGI 523
             N  ++E L     ++  G+  D    S   SLI GF   GE + +AF L +E    GI
Sbjct: 338 --NGRVQEALKVFSELKEKGLVPDVFTYS---SLISGFCKQGEVE-KAFELHDEMCLKGI 391

Query: 524 VP 525
            P
Sbjct: 392 AP 393



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 133/331 (40%), Gaps = 37/331 (11%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  +  YN L+    + G I     L + M  KGL      Y       CKS+  + EA
Sbjct: 391 IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSEN-VAEA 449

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F  F  +P+    P    +N L+  C    D E A  + R + + G  A    + TLI  
Sbjct: 450 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF-ATTLSFNTLIDG 508

Query: 137 CAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             KS K+        + + + + PD V +  +I    ++G ++ A  +  EM      VD
Sbjct: 509 YCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVD 568

Query: 189 ---------------PDHITIGALMKA-CANAGQVDRAREVYKMIHKYNI-KGTPEVYTI 231
                          PD +T G ++ A C     V+  +   +++ K  + KGT  ++ +
Sbjct: 569 TVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGT--IHDL 626

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            I    +  D   A  + D+M + G+ P     S L+     AGK++ A  + +  K+ G
Sbjct: 627 LITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLG 686

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHM 322
           +     +   L+    N  + + A  L + +
Sbjct: 687 LVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 717



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 89/186 (47%), Gaps = 3/186 (1%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M +KG++P+    + +      A ++  A    +E +  G+     + S+L+       +
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             + L + + M S  +   + T N LI  LC   ++ K  E+L  M +LG  PN+ T+ +
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFN 429
           L+    R+ ++   L LL + ++  ++P+ V +  +I G+C  +    A  L E  ++F+
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEK-MTFS 179

Query: 430 SGRPQI 435
             +P +
Sbjct: 180 GLKPNV 185


>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
 gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 116/430 (26%), Positives = 202/430 (46%), Gaps = 63/430 (14%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G++S    LL ++ + G  + D   +      C S    +EA   FK +     
Sbjct: 6   NMLGKEGKVSVAASLLNNLHKDGF-EPDVYAYTSLITACVSNGRYREAVMVFKKMEEEGC 64

Query: 90  -PTLSTFNMLMSVCASS----KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--- 141
            PTL T+N++++V            G F+ ++    AG+  D   Y TLIT C +     
Sbjct: 65  KPTLITYNVILNVYGKMGMPWNKITGLFEGMK---NAGILPDEYTYNTLITCCRRGSLYE 121

Query: 142 KVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           +  A+FE++K     PD+V +N L+   G+S  +  A +VL EM  EV+   P  +T  +
Sbjct: 122 EAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREM--EVNGCSPSIVTYNS 179

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ A A  G ++ A E+   + +  IK     YT  ++   +TG  E A  V+++M   G
Sbjct: 180 LISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAG 239

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAK-------------------NQGIS---- 293
             P+    +ALI   G+ GK     ++ +E K                     G+     
Sbjct: 240 CKPNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVS 299

Query: 294 --------VGII----SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
                   VG +    +Y++L+ A S   ++ +A+ +Y+ M    + P +ST NA++ AL
Sbjct: 300 GVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAAL 359

Query: 342 CDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLML-LSQAKEDGVI- 398
             G    ++ ++L++M+  G+C PN +T+  LL A    +  E+G ML L++    GVI 
Sbjct: 360 ARGGLWEQSEKILAEMQD-GMCKPNELTHCSLLHA--YANGKEIGRMLALAEEICSGVIE 416

Query: 399 PNLVMFKCII 408
           P+ V+ K ++
Sbjct: 417 PHAVLLKTLV 426



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 187/416 (44%), Gaps = 21/416 (5%)

Query: 30  HSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LI   R+G +  E   + EDM+  G +  DKV +    +V    + IKEA    +
Sbjct: 105 YTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVP-DKVTYNTLLDVYGKSRRIKEAIEVLR 163

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +     +P++ T+N L+S  A     E A ++   + E G+K D   YT +++   ++G
Sbjct: 164 EMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTG 223

Query: 142 KVDA---MFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K ++   +FE +     KP+   FNALI   G  G       V  E+  ++    PD +T
Sbjct: 224 KDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEI--KICCCVPDIVT 281

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+      G       V+K + +       + Y   I+  S+ G ++ A ++Y  M 
Sbjct: 282 WNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRML 341

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
             G+ PD    +A++      G  E + +IL E ++       +++ SL+ A +N K   
Sbjct: 342 DTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIG 401

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           + L L E + S  ++P    +  L+      D L +      ++K  G  P+  T + ++
Sbjct: 402 RMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDLSTLNAMI 461

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLS 427
               R+  V     +L+  KE G  P+L  +  ++ M S+   +E++  + + +L+
Sbjct: 462 AIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILA 517



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 147/336 (43%), Gaps = 17/336 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDA 145
           P +  +  L++ C S+     A  V + ++E G K     Y  ++    K G    K+  
Sbjct: 31  PDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKITG 90

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +FE +K     PD   +N LIT C +    + A  V  +M +      PD +T   L+  
Sbjct: 91  LFEGMKNAGILPDEYTYNTLITCCRRGSLYEEAAAVFEDMKS--MGFVPDKVTYNTLLDV 148

Query: 201 CANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGV 257
               G+  R +E  +++ +  + G +P +  Y   I+  ++ G  E A  + + M ++G+
Sbjct: 149 ---YGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGI 205

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             D    +A++      GK E+A  + +E +  G    I ++++L+    N   + + ++
Sbjct: 206 KLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCKPNICTFNALIKMHGNRGKFAEMMK 265

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           ++E +K     P + T N L+          +   V  +MK +G  P   TY+ L+ A  
Sbjct: 266 VFEEIKICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYS 325

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           R    +  + +  +  + G+ P+L  +  ++   +R
Sbjct: 326 RCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALAR 361



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 154/331 (46%), Gaps = 11/331 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P + T+N L++V   +        V + ++  G   +   Y TLI+  ++ G  D   AM
Sbjct: 277 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAM 336

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           ++      + PD   +NA++ A  + G  +++  +LAEM   +    P+ +T  +L+ A 
Sbjct: 337 YKRMLDTGITPDLSTYNAVLAALARGGLWEQSEKILAEMQDGM--CKPNELTHCSLLHAY 394

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           AN  ++ R   + + I    I+    +    +   S+      A   + ++ +KG  PD 
Sbjct: 395 ANGKEIGRMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLLEAERAFLELKRKGFSPDL 454

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
             L+A+I   G    V    EIL   K  G +  + +Y+SLM   S ++N++++ E+ + 
Sbjct: 455 STLNAMIAIYGRRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKE 514

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           + +  +KP + + N +I A C   ++ +   + S+M+  GL P+ ITY+  + +      
Sbjct: 515 ILAKGIKPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSM 574

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            E  + ++    + G  PN   +  +I G C
Sbjct: 575 FEEAIDVVCYMIKHGCKPNQNTYNSVIDGYC 605



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 132/287 (45%), Gaps = 11/287 (3%)

Query: 133 LITTCAKSGKVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           +I    K GKV    ++  N+     +PD   + +LITAC  +G    A  V  +M  E 
Sbjct: 4   IINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKMEEE- 62

Query: 185 HPVDPDHITIGALMKACANAGQ-VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
               P  IT   ++      G   ++   +++ +    I      Y   I CC +   +E
Sbjct: 63  -GCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYE 121

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A +V++DM   G +PD+V  + L+D  G + +++ A E+L+E +  G S  I++Y+SL+
Sbjct: 122 EAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLI 181

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
            A +     ++A+EL   M    +K  V T  A+++      +    M V  +M++ G  
Sbjct: 182 SAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCK 241

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
           PN  T++ L+     +      + +  + K    +P++V +  ++ +
Sbjct: 242 PNICTFNALIKMHGNRGKFAEMMKVFEEIKICCCVPDIVTWNTLLAV 288



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 116/256 (45%), Gaps = 3/256 (1%)

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
           +I   G+ G V  A  +L  ++ +    +PD     +L+ AC + G+   A  V+K + +
Sbjct: 4   IINMLGKEGKVSVAASLLNNLHKD--GFEPDVYAYTSLITACVSNGRYREAVMVFKKMEE 61

Query: 220 YNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278
              K T   Y + +N   + G  W     +++ M   G++PDE   + LI         E
Sbjct: 62  EGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLYE 121

Query: 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338
            A  + ++ K+ G     ++Y++L+     ++  ++A+E+   M+     P++ T N+LI
Sbjct: 122 EAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLI 181

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
           +A      L + ME+ + M   G+  +  TY+ +L    R    E  + +  + +  G  
Sbjct: 182 SAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDESAMRVFEEMRTAGCK 241

Query: 399 PNLVMFKCIIGMCSRR 414
           PN+  F  +I M   R
Sbjct: 242 PNICTFNALIKMHGNR 257



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 7/208 (3%)

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
           +  ++      G+V  A  +   +HK   +     YT  I  C   G +  A  V+  M 
Sbjct: 1   VAVIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKME 60

Query: 254 KKGVIPDEVFLSALIDFAGHAG----KVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           ++G  P  +  + +++  G  G    K+   FE +   KN GI     +Y++L+  C   
Sbjct: 61  EEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGM---KNAGILPDEYTYNTLITCCRRG 117

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
             +++A  ++E MKS+   P   T N L+       ++ + +EVL +M+  G  P+ +TY
Sbjct: 118 SLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTY 177

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGV 397
           + L+ A  R   +E  + L +Q  E G+
Sbjct: 178 NSLISAYARDGLLEEAMELKNQMVERGI 205



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 113/267 (42%), Gaps = 30/267 (11%)

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
           ++ +I+  G  GKV  A  +L      G    + +Y+SL+ AC +   +++A+ +++ M+
Sbjct: 1   VAVIINMLGKEGKVSVAASLLNNLHKDGFEPDVYAYTSLITACVSNGRYREAVMVFKKME 60

Query: 324 SIKLKPTVSTMNALITALCD-GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               KPT+ T N ++      G    K   +   MK+ G+ P+  TY+ L+  C R    
Sbjct: 61  EEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSLY 120

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
           E    +    K  G +P+ V +  ++ +    Y K+R + E                   
Sbjct: 121 EEAAAVFEDMKSMGFVPDKVTYNTLLDV----YGKSRRIKE------------------- 157

Query: 443 ALMVYREAIVAGTIPTVEVVSKVLGCLQ----LPYNADIRERLVENLGVSADALKRSNLC 498
           A+ V RE  V G  P++   + ++        L    +++ ++VE  G+  D    + + 
Sbjct: 158 AIEVLREMEVNGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVER-GIKLDVFTYTAML 216

Query: 499 SLIDGFGEYDPRAFSLLEEAASFGIVP 525
           S     G+ D  A  + EE  + G  P
Sbjct: 217 SGFVRTGK-DESAMRVFEEMRTAGCKP 242



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/338 (19%), Positives = 148/338 (43%), Gaps = 19/338 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKS-QKAIKEAFRFFKLVPNPTLS 93
           + G  SE   + ++M+R G +     Y+     ++ C S  +A+    R       P LS
Sbjct: 291 QNGMDSEVSGVFKEMKRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLS 350

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---GKVDAMFENV 150
           T+N +++  A     E + ++L  +Q+   K +   + +L+   A     G++ A+ E +
Sbjct: 351 TYNAVLAALARGGLWEQSEKILAEMQDGMCKPNELTHCSLLHAYANGKEIGRMLALAEEI 410

Query: 151 -----KPDRVVFNALI---TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                +P  V+   L+   + C      +RAF     +  +     PD  T+ A++    
Sbjct: 411 CSGVIEPHAVLLKTLVLVNSKCDLLLEAERAF-----LELKRKGFSPDLSTLNAMIAIYG 465

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
               V +  E+   + +     +   Y   +   SQ+ ++E +  V  ++  KG+ PD +
Sbjct: 466 RRQMVTKTNEILNFMKESGFTPSLATYNSLMYMHSQSENFERSEEVLKEILAKGIKPDII 525

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + +I      G+++ A  I  E +  G+   +I+Y++ + + +    +++A+++  +M
Sbjct: 526 SYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAIDVVCYM 585

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
                KP  +T N++I   C  ++    ++ +S +  L
Sbjct: 586 IKHGCKPNQNTYNSVIDGYCKLNRRDDAIKFISSLHEL 623


>gi|387219047|gb|AFJ69232.1| hypothetical protein NGATSA_2004410 [Nannochloropsis gaditana
           CCMP526]
 gi|422293010|gb|EKU20311.1| hypothetical protein NGA_2004410 [Nannochloropsis gaditana CCMP526]
 gi|422293947|gb|EKU21247.1| hypothetical protein NGA_2004420 [Nannochloropsis gaditana CCMP526]
          Length = 1057

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 176/389 (45%), Gaps = 29/389 (7%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFNM 97
           G+    + LL ++     ++++   +      C       EA    K   + + + T+N 
Sbjct: 460 GQWEHALSLLAEVRAARWIELEPSTYNAAIAACAKSGRFNEALDLLKECGDASNVVTYNS 519

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----NVKPD 153
            M  C+S    + AFQ+L++++  G++ D   YTT++   +       +       V   
Sbjct: 520 AMQACSSGGRPDLAFQLLQVMKANGVEPDVVSYTTVMQRSSVDVATSVLNRMRAAGVSVG 579

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
            + +NAL+ AC + G    +  +L EM+ +   V P+ +T    M+AC   GQ   A EV
Sbjct: 580 VMTYNALLNACAREGDWRTSLAMLEEMDHQ--SVAPNVVTYTLAMEACGRGGQWQAALEV 637

Query: 214 YKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGV--IPD-------- 260
              +++  ++G P   +    AI+ C++  DW  A S+  D++ +G   I D        
Sbjct: 638 ---LNEMTVRGVPLDSKACQTAIDVCAKVQDWNKALSLLRDVSAQGRDGIGDQGSGKGGT 694

Query: 261 -EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
            E++  A+  F G AG+ E    +L+        V  ++    M AC+ A  W++A+ L 
Sbjct: 695 KELYEKAMAAF-GRAGEWEKVLWLLEGMDRPDQKVTNLA----MRACAQAGRWEEAVGLL 749

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           ++M S  + P   + N  I A        K +++L +M   G+ P+ ++Y+  + AC   
Sbjct: 750 QNMTSKGIAPDQWSYNTAIHACAQAGNAEKALKLLKEMGQEGVVPDVVSYTTAMDACASV 809

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            DVE  L LL +  + GV PN   F  I+
Sbjct: 810 GDVETSLRLLEEMVKKGVHPNHRSFNAIM 838



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 170/412 (41%), Gaps = 60/412 (14%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           A+ V   + SY  ++++  +     +L  M   G+      Y+A   N C  +   + + 
Sbjct: 542 ANGVEPDVVSYTTVMQRSSVDVATSVLNRMRAAGVSVGVMTYNA-LLNACAREGDWRTSL 600

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              + + +    P + T+ + M  C      + A +VL  +   G+  D K   T I  C
Sbjct: 601 AMLEEMDHQSVAPNVVTYTLAMEACGRGGQWQAALEVLNEMTVRGVPLDSKACQTAIDVC 660

Query: 138 AK----------------------------SGKVDAMFENV------------------- 150
           AK                             G    ++E                     
Sbjct: 661 AKVQDWNKALSLLRDVSAQGRDGIGDQGSGKGGTKELYEKAMAAFGRAGEWEKVLWLLEG 720

Query: 151 --KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
             +PD+ V N  + AC Q+G  + A  +L  M ++   + PD  +    + ACA AG  +
Sbjct: 721 MDRPDQKVTNLAMRACAQAGRWEEAVGLLQNMTSK--GIAPDQWSYNTAIHACAQAGNAE 778

Query: 209 RAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           +A ++ K + +  +   P+V  YT A++ C+  GD E +  + ++M KKGV P+    +A
Sbjct: 779 KALKLLKEMGQEGV--VPDVVSYTTAMDACASVGDVETSLRLLEEMVKKGVHPNHRSFNA 836

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           ++   G+AG+   A  +L      G++  + SY+  M  C     WQ AL++ E M + +
Sbjct: 837 IMSAHGNAGQATEAIAVLGLMTEHGLTPDVKSYTLAMDICLRQGLWQVALKIVERMHATR 896

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++    +    I A   G+Q    +  L +M   G  P+  +Y++++ AC R
Sbjct: 897 VRFDAISYGKAIHAAHLGEQWEVAVGFLDEMVESGWLPSHKSYTLVVEACRR 948



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/420 (22%), Positives = 168/420 (40%), Gaps = 81/420 (19%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
             +C  Q+   EA R  + +      P L  +  +M  CA +   E A  ++  ++EAG+
Sbjct: 215 IQICARQERWFEAVRLLRDMRTRGAPPDLVAYTAVMDCCAKAGQWEAALTLIPEMKEAGV 274

Query: 124 KADCKLYTTLITTCAKSGKVDAMFENVK----PDRVVFNALITACGQSGAVDRAFDVLAE 179
           + D   Y T I  CAK G+     E ++    P+ + +N+ + +C ++G    A  +L E
Sbjct: 275 RPDRITYNTAIDACAKGGQWQRALEFLRGMEEPNLISYNSALDSCAKTGRWKEAVGLLEE 334

Query: 180 M----------------------------------NAEVHP-VDPDHITIGALMKACANA 204
           M                                  N    P + P+ I+    ++ACA  
Sbjct: 335 MRQAGRRKDGRGSTVSDQTQEVGANQGNTTNTIPGNRGSKPSIRPNIISYNTAIEACAKR 394

Query: 205 GQVDRAREVYKMI--------------------------HKYNIKGTPE----VYTIAIN 234
           G+ + A  + + +                          H+ + +  PE     Y  AI 
Sbjct: 395 GRFEEALAILRSMQVPDTEKAGGHVPLPSASKKRNGASHHRRHQRLVPEPDLVTYHSAIK 454

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDE-VFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
            C   G WE A S+  ++     I  E    +A I     +G+   A ++L+E    G +
Sbjct: 455 ACGHAGQWEHALSLLAEVRAARWIELEPSTYNAAIAACAKSGRFNEALDLLKEC---GDA 511

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
             +++Y+S M ACS+      A +L + MK+  ++P V +     T +     +     V
Sbjct: 512 SNVVTYNSAMQACSSGGRPDLAFQLLQVMKANGVEPDVVS----YTTVMQRSSVDVATSV 567

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           L+ M++ G+    +TY+ LL AC R+ D    L +L +     V PN+V +   +  C R
Sbjct: 568 LNRMRAAGVSVGVMTYNALLNACAREGDWRTSLAMLEEMDHQSVAPNVVTYTLAMEACGR 627



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/435 (21%), Positives = 172/435 (39%), Gaps = 84/435 (19%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN 96
           + G+    + L+ +M+  G+   D++ +    + C      + A  F + +  P L ++N
Sbjct: 255 KAGQWEAALTLIPEMKEAGVRP-DRITYNTAIDACAKGGQWQRALEFLRGMEEPNLISYN 313

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCK---------------------------- 128
             +  CA +   + A  +L  +++AG + D +                            
Sbjct: 314 SALDSCAKTGRWKEAVGLLEEMRQAGRRKDGRGSTVSDQTQEVGANQGNTTNTIPGNRGS 373

Query: 129 ---------LYTTLITTCAKSGKVD---AMFENVK------------------------- 151
                     Y T I  CAK G+ +   A+  +++                         
Sbjct: 374 KPSIRPNIISYNTAIEACAKRGRFEEALAILRSMQVPDTEKAGGHVPLPSASKKRNGASH 433

Query: 152 ----------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                     PD V +++ I ACG +G  + A  +LAE+ A    ++ +  T  A + AC
Sbjct: 434 HRRHQRLVPEPDLVTYHSAIKACGHAGQWEHALSLLAEVRA-ARWIELEPSTYNAAIAAC 492

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A +G+ + A ++ K     +   T   Y  A+  CS  G  + A  +   M   GV PD 
Sbjct: 493 AKSGRFNEALDLLKECGDASNVVT---YNSAMQACSSGGRPDLAFQLLQVMKANGVEPDV 549

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + ++  +     V+ A  +L   +  G+SVG+++Y++L+ AC+   +W+ +L + E 
Sbjct: 550 VSYTTVMQRS----SVDVATSVLNRMRAAGVSVGVMTYNALLNACAREGDWRTSLAMLEE 605

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    + P V T    + A   G Q    +EVL++M   G+  ++      +  C +  D
Sbjct: 606 MDHQSVAPNVVTYTLAMEACGRGGQWQAALEVLNEMTVRGVPLDSKACQTAIDVCAKVQD 665

Query: 382 VEVGLMLLSQAKEDG 396
               L LL      G
Sbjct: 666 WNKALSLLRDVSAQG 680



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 126/266 (47%), Gaps = 21/266 (7%)

Query: 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 218
           A+++   + G + +A  +L+ + A      P  + +  L+ AC NA  +  A  V KM H
Sbjct: 150 AIVSKLAKEGYLKQAVKLLSNLKA------PSPLLVRTLLMACVNAESLPLALAVVKMPH 203

Query: 219 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278
              +  + + YT+ I  C++   W  A  +  DM  +G  PD V  +A++D    AG+ E
Sbjct: 204 ---VHPSVQQYTLVIQICARQERWFEAVRLLRDMRTRGAPPDLVAYTAVMDCCAKAGQWE 260

Query: 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338
           AA  ++ E K  G+    I+Y++ + AC+    WQ+ALE    M+    +P + + N+ +
Sbjct: 261 AALTLIPEMKEAGVRPDRITYNTAIDACAKGGQWQRALEFLRGME----EPNLISYNSAL 316

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPN----TITYSILLVACERKDDVEVGLMLLSQAKE 394
            +     +  + + +L +M+  G   +    T++     V   + +      +  ++  +
Sbjct: 317 DSCAKTGRWKEAVGLLEEMRQAGRRKDGRGSTVSDQTQEVGANQGNTTNT--IPGNRGSK 374

Query: 395 DGVIPNLVMFKCIIGMCSR--RYEKA 418
             + PN++ +   I  C++  R+E+A
Sbjct: 375 PSIRPNIISYNTAIEACAKRGRFEEA 400



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 14/230 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P     N+ M  CA +   E A  +L+ +   G+  D   Y T I  CA++G  +     
Sbjct: 724 PDQKVTNLAMRACAQAGRWEEAVGLLQNMTSKGIAPDQWSYNTAIHACAQAGNAEKALKL 783

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E V PD V +   + AC   G V+ +  +L EM  +   V P+H +  A+M A 
Sbjct: 784 LKEMGQEGVVPDVVSYTTAMDACASVGDVETSLRLLEEMVKK--GVHPNHRSFNAIMSAH 841

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            NAGQ   A  V  ++ ++ +  TP+V  YT+A++ C + G W+ A  + + M    V  
Sbjct: 842 GNAGQATEAIAVLGLMTEHGL--TPDVKSYTLAMDICLRQGLWQVALKIVERMHATRVRF 899

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           D +     I  A    + E A   L E    G      SY+ ++ AC  A
Sbjct: 900 DAISYGKAIHAAHLGEQWEVAVGFLDEMVESGWLPSHKSYTLVVEACRRA 949



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 72/137 (52%), Gaps = 10/137 (7%)

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           +L+ AC NA++   AL +   +K   + P+V     +I      ++  + + +L DM++ 
Sbjct: 181 TLLMACVNAESLPLALAV---VKMPHVHPSVQQYTLVIQICARQERWFEAVRLLRDMRTR 237

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
           G  P+ + Y+ ++  C +    E  L L+ + KE GV P+ + +   I  C++  ++++A
Sbjct: 238 GAPPDLVAYTAVMDCCAKAGQWEAALTLIPEMKEAGVRPDRITYNTAIDACAKGGQWQRA 297

Query: 419 ----RTLNE-HVLSFNS 430
               R + E +++S+NS
Sbjct: 298 LEFLRGMEEPNLISYNS 314



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 19/201 (9%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           SYN  I    + G   + + LL++M ++G++  D V +    + C S   ++ + R    
Sbjct: 763 SYNTAIHACAQAGNAEKALKLLKEMGQEGVVP-DVVSYTTAMDACASVGDVETSLRLLEE 821

Query: 85  --KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             K   +P   +FN +MS   ++  +  A  VL L+ E GL  D K YT  +  C + G 
Sbjct: 822 MVKKGVHPNHRSFNAIMSAHGNAGQATEAIAVLGLMTEHGLTPDVKSYTLAMDICLRQGL 881

Query: 143 VDA---MFENVKPDRVVFNAL-----ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
                 + E +   RV F+A+     I A       + A   L EM  E   + P H + 
Sbjct: 882 WQVALKIVERMHATRVRFDAISYGKAIHAAHLGEQWEVAVGFLDEM-VESGWL-PSHKSY 939

Query: 195 GALMKACANAGQVDRAREVYK 215
             +++AC  AG+   A EV +
Sbjct: 940 TLVVEACRRAGESRLAEEVSR 960


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 110/459 (23%), Positives = 199/459 (43%), Gaps = 26/459 (5%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----K 75
           V+   ++Y  +IR    +GR+ E + LL+DM  +G       Y      VCKS       
Sbjct: 172 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 231

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            + +  R     PN  + T+N++++        + A + L  +   G + D   YTT++ 
Sbjct: 232 EVLDEMRAKGCTPN--IVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLK 289

Query: 136 -TCA--KSGKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
             CA  +   V+ +F     +N  P+ V F+ L+    + G V+RA  VL +M+   H  
Sbjct: 290 GLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSG--HGC 347

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
             +      ++      G+VD A +    +  Y        YT  +    +   WE A  
Sbjct: 348 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKE 407

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +  +M +K   P+EV  +  I      G +E A  ++++    G  V I++Y++L+    
Sbjct: 408 LLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFC 467

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                  ALEL+    S+  KP   T   L+T LC+ ++L    E+L++M      PN +
Sbjct: 468 VQGRVDSALELF---YSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVV 524

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN-EHVL 426
           T+++L+    +K  ++  + L+ Q  E G  PNL+ +  ++   ++       L   H L
Sbjct: 525 TFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGL 584

Query: 427 SFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 465
             N   P I   ++S+  ++ RE  V   I    +V  +
Sbjct: 585 VSNGVSPDIVT-YSSIIGVLSREDRVEEAIKMFHIVQDL 622



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 124/305 (40%), Gaps = 11/305 (3%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQS 167
           RL+    +  D   YT +I      G+V        D +    +P  V +  L+ A  +S
Sbjct: 165 RLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKS 224

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
               +A +VL EM A+     P+ +T   ++      G+VD ARE    +  Y  +    
Sbjct: 225 TGFGQAMEVLDEMRAK--GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTV 282

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            YT  +        WE    ++ +M +K  +P+EV    L+ F    G VE A ++L++ 
Sbjct: 283 SYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQM 342

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
              G +      + ++           A +   +M S    P   +   ++  LC  ++ 
Sbjct: 343 SGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERW 402

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
               E+L +M      PN +T++  +    +K  +E   ML+ Q  E G   N+V +  +
Sbjct: 403 EDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNAL 462

Query: 408 I-GMC 411
           + G C
Sbjct: 463 VNGFC 467



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/424 (20%), Positives = 178/424 (41%), Gaps = 55/424 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAF-RFFKLVPN 89
           N + R+GR+ +  + L  +   G       Y      +C +++   ++E F    +    
Sbjct: 254 NGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM 313

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   TF+ML+         E A QVL  +   G  A+  L   +I T  K G+VD  F+ 
Sbjct: 314 PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 373

Query: 149 ------------------------------------------NVKPDRVVFNALITACGQ 166
                                                     N  P+ V FN  I    Q
Sbjct: 374 LNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQ 433

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
            G +++A  ++ +M+   H  + + +T  AL+      G+VD A E++     Y++   P
Sbjct: 434 KGLIEQATMLIEQMSE--HGCEVNIVTYNALVNGFCVQGRVDSALELF-----YSMPCKP 486

Query: 227 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
               YT  +         + A  +  +M +K   P+ V  + L+ F    G ++ A E++
Sbjct: 487 NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELV 546

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
           ++    G +  +I+Y++L+   +   N ++ALEL   + S  + P + T +++I  L   
Sbjct: 547 EQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSRE 606

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           D++ + +++   ++ LG+ P  + Y+ +L+A  ++ + +  +   +    +G +PN + +
Sbjct: 607 DRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 666

Query: 405 KCII 408
             +I
Sbjct: 667 ITLI 670



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 165/376 (43%), Gaps = 22/376 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF------FKLVPNP 90
           R G +   I +LE M   G      + +     +CK Q  + +AF+F      +   P+ 
Sbjct: 328 RGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICK-QGRVDDAFQFLNNMGSYGCSPD- 385

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----- 145
           T+S   +L  +C + +  E A ++L+ +       +   + T I    + G ++      
Sbjct: 386 TISYTTVLKGLCRAER-WEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLI 444

Query: 146 --MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
             M E+  + + V +NAL+      G VD A ++   M     P  P+ IT   L+    
Sbjct: 445 EQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM-----PCKPNTITYTTLLTGLC 499

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           NA ++D A E+   + + +       + + ++   Q G  + A  + + M + G  P+ +
Sbjct: 500 NAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLI 559

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L+D        E A E+L    + G+S  I++YSS++G  S     ++A++++  +
Sbjct: 560 TYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIV 619

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           + + ++P     N ++ ALC        ++  + M S G  PN +TY  L+     +D +
Sbjct: 620 QDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFL 679

Query: 383 EVGLMLLSQAKEDGVI 398
           +    LL +    GV+
Sbjct: 680 KETRDLLRELCSRGVL 695



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 124/329 (37%), Gaps = 66/329 (20%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLS 93
           L ++G I +   L+E M   G       Y+A     C  Q  +  A   F  +P  P   
Sbjct: 431 LCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFC-VQGRVDSALELFYSMPCKPNTI 489

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPD 153
           T+  L++   +++  + A ++L  +    L+ DC                        P+
Sbjct: 490 TYTTLLTGLCNAERLDAAAELLAEM----LQKDC-----------------------APN 522

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
            V FN L++   Q G +D A +++ +M    H   P+ IT   L+               
Sbjct: 523 VVTFNVLVSFFCQKGLMDEAIELVEQMME--HGCTPNLITYNTLLDG------------- 567

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
                            I  +C S     E A  +   +   GV PD V  S++I     
Sbjct: 568 -----------------ITKDCNS-----EEALELLHGLVSNGVSPDIVTYSSIIGVLSR 605

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
             +VE A ++    ++ G+    + Y+ ++ A     N   A++ + +M S    P   T
Sbjct: 606 EDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELT 665

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGL 362
              LI  L + D L +T ++L ++ S G+
Sbjct: 666 YITLIEGLANEDFLKETRDLLRELCSRGV 694


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 110/459 (23%), Positives = 199/459 (43%), Gaps = 26/459 (5%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----K 75
           V+   ++Y  +IR    +GR+ E + LL+DM  +G       Y      VCKS       
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 200

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            + +  R     PN  + T+N++++        + A + L  +   G + D   YTT++ 
Sbjct: 201 EVLDEMRAKGCTPN--IVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLK 258

Query: 136 -TCA--KSGKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
             CA  +   V+ +F     +N  P+ V F+ L+    + G V+RA  VL +M+   H  
Sbjct: 259 GLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSG--HGC 316

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
             +      ++      G+VD A +    +  Y        YT  +    +   WE A  
Sbjct: 317 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKE 376

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +  +M +K   P+EV  +  I      G +E A  ++++    G  V I++Y++L+    
Sbjct: 377 LLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFC 436

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                  ALEL+    S+  KP   T   L+T LC+ ++L    E+L++M      PN +
Sbjct: 437 VQGRVDSALELF---YSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVV 493

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN-EHVL 426
           T+++L+    +K  ++  + L+ Q  E G  PNL+ +  ++   ++       L   H L
Sbjct: 494 TFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGL 553

Query: 427 SFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 465
             N   P I   ++S+  ++ RE  V   I    +V  +
Sbjct: 554 VSNGVSPDIVT-YSSIIGVLSREDRVEEAIKMFHIVQDL 591



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 124/305 (40%), Gaps = 11/305 (3%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQS 167
           RL+    +  D   YT +I      G+V        D +    +P  V +  L+ A  +S
Sbjct: 134 RLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKS 193

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
               +A +VL EM A+     P+ +T   ++      G+VD ARE    +  Y  +    
Sbjct: 194 TGFGQAMEVLDEMRAK--GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTV 251

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            YT  +        WE    ++ +M +K  +P+EV    L+ F    G VE A ++L++ 
Sbjct: 252 SYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQM 311

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
              G +      + ++           A +   +M S    P   +   ++  LC  ++ 
Sbjct: 312 SGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERW 371

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
               E+L +M      PN +T++  +    +K  +E   ML+ Q  E G   N+V +  +
Sbjct: 372 EDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNAL 431

Query: 408 I-GMC 411
           + G C
Sbjct: 432 VNGFC 436



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 88/424 (20%), Positives = 178/424 (41%), Gaps = 55/424 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAF-RFFKLVPN 89
           N + R+GR+ +  + L  +   G       Y      +C +++   ++E F    +    
Sbjct: 223 NGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM 282

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   TF+ML+         E A QVL  +   G  A+  L   +I T  K G+VD  F+ 
Sbjct: 283 PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 342

Query: 149 ------------------------------------------NVKPDRVVFNALITACGQ 166
                                                     N  P+ V FN  I    Q
Sbjct: 343 LNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQ 402

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
            G +++A  ++ +M+   H  + + +T  AL+      G+VD A E++     Y++   P
Sbjct: 403 KGLIEQATMLIEQMSE--HGCEVNIVTYNALVNGFCVQGRVDSALELF-----YSMPCKP 455

Query: 227 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
               YT  +         + A  +  +M +K   P+ V  + L+ F    G ++ A E++
Sbjct: 456 NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELV 515

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
           ++    G +  +I+Y++L+   +   N ++ALEL   + S  + P + T +++I  L   
Sbjct: 516 EQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSRE 575

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           D++ + +++   ++ LG+ P  + Y+ +L+A  ++ + +  +   +    +G +PN + +
Sbjct: 576 DRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 635

Query: 405 KCII 408
             +I
Sbjct: 636 ITLI 639



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 165/376 (43%), Gaps = 22/376 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF------FKLVPNP 90
           R G +   I +LE M   G      + +     +CK Q  + +AF+F      +   P+ 
Sbjct: 297 RGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICK-QGRVDDAFQFLNNMGSYGCSPD- 354

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----- 145
           T+S   +L  +C + +  E A ++L+ +       +   + T I    + G ++      
Sbjct: 355 TISYTTVLKGLCRAER-WEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLI 413

Query: 146 --MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
             M E+  + + V +NAL+      G VD A ++   M     P  P+ IT   L+    
Sbjct: 414 EQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSM-----PCKPNTITYTTLLTGLC 468

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           NA ++D A E+   + + +       + + ++   Q G  + A  + + M + G  P+ +
Sbjct: 469 NAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLI 528

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L+D        E A E+L    + G+S  I++YSS++G  S     ++A++++  +
Sbjct: 529 TYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIV 588

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           + + ++P     N ++ ALC        ++  + M S G  PN +TY  L+     +D +
Sbjct: 589 QDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLIEGLANEDFL 648

Query: 383 EVGLMLLSQAKEDGVI 398
           +    LL +    GV+
Sbjct: 649 KETRDLLRELCSRGVL 664



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 70/329 (21%), Positives = 124/329 (37%), Gaps = 66/329 (20%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLS 93
           L ++G I +   L+E M   G       Y+A     C  Q  +  A   F  +P  P   
Sbjct: 400 LCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFC-VQGRVDSALELFYSMPCKPNTI 458

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPD 153
           T+  L++   +++  + A ++L  +    L+ DC                        P+
Sbjct: 459 TYTTLLTGLCNAERLDAAAELLAEM----LQKDC-----------------------APN 491

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
            V FN L++   Q G +D A +++ +M    H   P+ IT   L+               
Sbjct: 492 VVTFNVLVSFFCQKGLMDEAIELVEQMME--HGCTPNLITYNTLLDG------------- 536

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
                            I  +C S     E A  +   +   GV PD V  S++I     
Sbjct: 537 -----------------ITKDCNS-----EEALELLHGLVSNGVSPDIVTYSSIIGVLSR 574

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
             +VE A ++    ++ G+    + Y+ ++ A     N   A++ + +M S    P   T
Sbjct: 575 EDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELT 634

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGL 362
              LI  L + D L +T ++L ++ S G+
Sbjct: 635 YITLIEGLANEDFLKETRDLLRELCSRGV 663


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/384 (25%), Positives = 172/384 (44%), Gaps = 42/384 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L R G+I E   LL  ME KG +                                P +
Sbjct: 118 NSLFRLGKIREAHHLLMRMEFKGCI--------------------------------PDV 145

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------D 144
            ++  ++       + +   Q+++ +Q  GLK +   Y+++I    KSGKV        +
Sbjct: 146 VSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLRE 205

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
            M   V PD V++  LI    + G    A+ + +EM  E   + PD I   AL+   + +
Sbjct: 206 MMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEM--EAREIVPDSIAFSALICGLSGS 263

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G+V  A +++  + K   +     YT  I+   + G+ + A  +++ M + G+ P+ V  
Sbjct: 264 GKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTY 323

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           +AL D    +G+++ A E+L E   +G+ + I +Y++++     A N  +A++L E MK 
Sbjct: 324 TALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKE 383

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             L P   T   L+ A     ++ K  E+L +M   GL P  +T+++L+        +E 
Sbjct: 384 AGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLED 443

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII 408
           G  LL    E G++PN   +  I+
Sbjct: 444 GERLLKWMLEKGIMPNAATYNSIM 467



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 173/385 (44%), Gaps = 24/385 (6%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DA 145
           ++N+LM+          A  +L  ++  G   D   YTT+I      G++        + 
Sbjct: 112 SYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEM 171

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             + +KP+   ++++I    +SG V     VL EM      V PDH+    L+      G
Sbjct: 172 QLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMK--RGVFPDHVIYTTLIDGFCKLG 229

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
               A +++  +    I      ++  I   S +G    A  ++++M KKG  PDEV  +
Sbjct: 230 NTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYT 289

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           ALID     G+++ AF +  +    G++  +++Y++L      +     A EL   M   
Sbjct: 290 ALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRK 349

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            L+  +ST N ++  LC    + + ++++ +MK  GL P+TITY+ L+ A  +  ++   
Sbjct: 350 GLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKA 409

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL---------SFNSGRPQ 434
             LL +  + G+ P +V F  ++ G+C S + E    L + +L         ++NS   Q
Sbjct: 410 RELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQ 469

Query: 435 --IENKWTSLALMVYREAIVAGTIP 457
             I N    ++  +YR     G +P
Sbjct: 470 YCIRNN-MRISTEIYRGMCAQGVVP 493



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/370 (20%), Positives = 160/370 (43%), Gaps = 15/370 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           + G       L  +ME + ++     + A    +  S K ++    F +++     P   
Sbjct: 227 KLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEV 286

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           T+  L+       + + AF +   + + GL  +   YT L     KSG++D   E     
Sbjct: 287 TYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEM 346

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN-AEVHPVDPDHITIGALMKACANA 204
               ++ +   +N ++    ++G + +A  ++ EM  A +HP   D IT   LM A    
Sbjct: 347 CRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHP---DTITYTTLMDAYYKT 403

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G++ +ARE+ + +    ++ T   + + +N    +G  E    +   M +KG++P+    
Sbjct: 404 GEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATY 463

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++++        +  + EI +    QG+     +Y+ L+     A+N ++A  L++ M  
Sbjct: 464 NSIMKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVE 523

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
            +   T S+ NALI       +L +  ++  +M+  GL  +   Y++ +     + ++E 
Sbjct: 524 KRFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMET 583

Query: 385 GLMLLSQAKE 394
            L L  +A E
Sbjct: 584 TLELCDEAIE 593



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 69/356 (19%), Positives = 147/356 (41%), Gaps = 23/356 (6%)

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW-EFAC 246
           DP H+      +    AG ++ AR+ +  +  Y +  +     + + C S   D      
Sbjct: 38  DP-HV-FDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMVL 95

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            V+ +  + GV  +    + L++     GK+  A  +L   + +G    ++SY++++   
Sbjct: 96  KVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGY 155

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            +    QK ++L + M+   LKP + T +++I  LC   ++ +  +VL +M   G+ P+ 
Sbjct: 156 CHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDH 215

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS---RRYEKARTLNE 423
           + Y+ L+    +  + +    L S+ +   ++P+ + F  +I   S   +  E  +  NE
Sbjct: 216 VIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNE 275

Query: 424 HVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQL 471
            +     G    E  +T+L            A  ++ + +  G  P V   + +   L  
Sbjct: 276 MI---KKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCK 332

Query: 472 PYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVP 525
               D    L+  +      L  S   ++++G  +     +A  L+EE    G+ P
Sbjct: 333 SGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHP 388



 Score = 46.2 bits (108), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 110/238 (46%), Gaps = 15/238 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N L + G I + + L+E+M+  GL      Y        K+ + +K      +++     
Sbjct: 363 NGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQ 422

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSG-KVDAM 146
           PT+ TFN+LM+ +C S K  +G  ++L+ + E G+  +   Y +++   C ++  ++   
Sbjct: 423 PTVVTFNVLMNGLCMSGKLEDGE-RLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTE 481

Query: 147 F------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                  + V PD   +N LI    ++  +  A+ +  EM  +   +     +  AL+K 
Sbjct: 482 IYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTAS--SYNALIKG 539

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                ++  AR++++ + +  +  + E+Y + ++   + G+ E    + D+  +K ++
Sbjct: 540 FFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIEKCLL 597


>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 158/342 (46%), Gaps = 11/342 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAM 146
           P    F+ L+S  A +   + A ++L   Q  GL       T LI+    +G+V   +A+
Sbjct: 231 PDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGIAGRVPEAEAL 290

Query: 147 F------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           F        +KP    +NAL+    + G++  A  VL EM+     V PD  T   L+ A
Sbjct: 291 FLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEHVLDEMSE--CGVAPDEATYSLLVDA 348

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              AG+ + AR + K +    +K +  V++  +      GDW+ A +V  +M   GV PD
Sbjct: 349 YTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPD 408

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
             F + +ID  G    +  A ++    + +GI   ++++++L+ A         A+EL++
Sbjct: 409 RHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFK 468

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+     P  +T N +I  L + ++      ++S+MK  GL PN ITY+ L+    R  
Sbjct: 469 EMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSG 528

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
             +  +  +   K DG+ P+  M+  ++   ++R      LN
Sbjct: 529 RYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALN 570



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 141/306 (46%), Gaps = 13/306 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P  +T+++L+     +   E A  +L+ ++  G+K    +++ ++      G     F  
Sbjct: 337 PDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAV 396

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V+PDR  +N +I   G+   +  A DV   M  E   ++PD +T   L+ A 
Sbjct: 397 LREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEG--IEPDVVTWNTLIDAH 454

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+ D A E++K + + N       Y I IN   +   W    ++  +M ++G++P+ 
Sbjct: 455 CKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGEQERWVGVETMMSEMKEQGLVPNI 514

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + L+D  G +G+ + A + ++  K  G+      Y +L+ A +       AL + + 
Sbjct: 515 ITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 574

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACER 378
           M++  L+ +   +N+LI A  +  ++ +   VL  MK     P+ ITY+ L   L+  E+
Sbjct: 575 MRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKALIRVEQ 634

Query: 379 KDDVEV 384
            D V V
Sbjct: 635 FDKVPV 640



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 118/293 (40%), Gaps = 41/293 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---GKVDAM 146
           P+   F+ +++      D + AF VLR +  +G++ D   Y  +I T  K    G    +
Sbjct: 372 PSSYVFSRILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDV 431

Query: 147 F-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP--------------- 186
           F     E ++PD V +N LI A  + G  D A ++  EM     P               
Sbjct: 432 FNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYNIMINLLGE 491

Query: 187 ------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                             + P+ IT   L+     +G+   A +  + +    +K +P +
Sbjct: 492 QERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTM 551

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   +N  +Q G  + A +V   M   G+    V L++LI+  G   +V  AF +LQ  K
Sbjct: 552 YHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRVVEAFSVLQFMK 611

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
                  +I+Y++LM A    + + K   +YE M +    P       L +AL
Sbjct: 612 ENDFRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARAMLRSAL 664



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 1/160 (0%)

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           D+    + PD    S LI     A   +AA E+L  A+  G++    + ++L+ A   A 
Sbjct: 223 DLRDSRLEPDAPLFSDLISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGIAG 282

Query: 311 NWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
              +A  L+ E   + ++KP     NAL+        L     VL +M   G+ P+  TY
Sbjct: 283 RVPEAEALFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEHVLDEMSECGVAPDEATY 342

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           S+L+ A  R    E   +LL + + DGV P+  +F  I+ 
Sbjct: 343 SLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILA 382


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 155/307 (50%), Gaps = 13/307 (4%)

Query: 113 QVLRLVQE---AGLKADCKLYTTLITTCAKSGKV---DAMFENVK-----PDRVVFNALI 161
           +VL+L++E    GLK +   Y ++I+   K+G+V   + +   +K     PD VV+  LI
Sbjct: 305 KVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLI 364

Query: 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
           +  G+SG V   + +  EM  +   + PD +T  +++     AG+V  AR+++  +    
Sbjct: 365 SGFGKSGNVSVEYKLFDEMKRK--KIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKG 422

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           +K     YT  I+   + G+ + A S+++ M +KG+ P+ V  +AL+D     G+V+ A 
Sbjct: 423 LKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIAN 482

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           E+L E   +G+   + +Y++L+       N ++A++L E M      P   T   ++ A 
Sbjct: 483 ELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAY 542

Query: 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
           C   ++ K  E+L  M   GL P  +T+++L+        +E G  L+    + G++PN 
Sbjct: 543 CKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNA 602

Query: 402 VMFKCII 408
             F  ++
Sbjct: 603 TTFNSLM 609



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 182/401 (45%), Gaps = 19/401 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRFFKLVPNPT 91
           L + G++ E   LL  ME +G +     Y       C+ +   K +K      +    P 
Sbjct: 262 LCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPN 321

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFE 148
             T+N ++S    +     A QVLR+++   +  D  +YTTLI+   KSG V     +F+
Sbjct: 322 QYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFD 381

Query: 149 NVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            +K     PD V + ++I    Q+G V  A  + +EM ++   + PD +T  AL+     
Sbjct: 382 EMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSK--GLKPDEVTYTALIDGYCK 439

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           AG++  A  ++  + +  +      YT  ++   + G+ + A  +  +M++KG+ P+   
Sbjct: 440 AGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCT 499

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +ALI+     G +E A ++++E    G     I+Y+++M A        KA EL   M 
Sbjct: 500 YNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIML 559

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              L+PT+ T N L+   C    L     ++  M   G+ PN  T++ L+     ++++ 
Sbjct: 560 DKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMR 619

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNE 423
             + +       GV+P+   +  +I G C     KAR + E
Sbjct: 620 ATIEIYKGMHAQGVVPDTNTYNILIKGHC-----KARNMKE 655



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 165/366 (45%), Gaps = 15/366 (4%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDS-EGAFQVLRLVQEA 121
           FF V      + EA + F  + N     ++ + N+ ++  ++S D    AF+V R   E 
Sbjct: 187 FFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFREYSEV 246

Query: 122 GLKADCKLYTTLITTCAKSGKVDAM--------FENVKPDRVVFNALITACGQSGAVDRA 173
           G+  +   Y  ++    + GKV           F    PD V ++ ++    Q   + + 
Sbjct: 247 GVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKV 306

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
             ++ E+  +   + P+  T  +++      G+V  A +V +++    I     VYT  I
Sbjct: 307 LKLMEELQRK--GLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLI 364

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           +   ++G+      ++D+M +K ++PD V  +++I     AGKV  A ++  E  ++G+ 
Sbjct: 365 SGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLK 424

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
              ++Y++L+     A   ++A  L+  M    L P V T  AL+  LC   ++    E+
Sbjct: 425 PDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANEL 484

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           L +M   GL PN  TY+ L+    +  ++E  + L+ +    G  P+ + +  I+    +
Sbjct: 485 LHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCK 544

Query: 414 RYEKAR 419
             E A+
Sbjct: 545 MGEMAK 550



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 177/409 (43%), Gaps = 56/409 (13%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTF 95
           ++ + + L+E+++RKGL      Y++    +CK+ + + EA +  +++ N    P    +
Sbjct: 302 QLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVV-EAEQVLRVMKNQRIFPDNVVY 360

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMF 147
             L+S    S +    +++   ++   +  D   YT++I    ++GKV        + + 
Sbjct: 361 TTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLS 420

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + +KPD V + ALI    ++G +  AF +  +M  +   + P+ +T  AL+      G+V
Sbjct: 421 KGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEK--GLTPNVVTYTALVDGLCKCGEV 478

Query: 208 DRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           D A E   ++H+ + KG  P V  Y   IN   + G+ E A  + ++M   G  PD +  
Sbjct: 479 DIANE---LLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITY 535

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNA-------------- 309
           + ++D     G++  A E+L+   ++G+   I++++ LM G C +               
Sbjct: 536 TTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLD 595

Query: 310 --------------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
                                N +  +E+Y+ M +  + P  +T N LI   C    + +
Sbjct: 596 KGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKE 655

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
              +  +M   G      +Y+ L+    ++   E    L  + +  G I
Sbjct: 656 AWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFI 704



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 164/373 (43%), Gaps = 13/373 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           + G +S    L ++M+RK ++     Y +    +C++ K ++    F +++     P   
Sbjct: 369 KSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEV 428

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           T+  L+     + + + AF +   + E GL  +   YT L+    K G+VD   E     
Sbjct: 429 TYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEM 488

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               ++P+   +NALI    + G +++A  ++ EM  ++    PD IT   +M A    G
Sbjct: 489 SEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEM--DLAGFFPDTITYTTIMDAYCKMG 546

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++ +A E+ +++    ++ T   + + +N    +G  E    +   M  KG++P+    +
Sbjct: 547 EMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFN 606

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           +L+        + A  EI +    QG+     +Y+ L+     A+N ++A  L++ M   
Sbjct: 607 SLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEK 666

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
               T ++ N+LI       +  +  ++  +M++ G       Y I +     + + E  
Sbjct: 667 GFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENT 726

Query: 386 LMLLSQAKEDGVI 398
           L L  +A E  ++
Sbjct: 727 LELCDEAIEKCLV 739



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 94/442 (21%), Positives = 188/442 (42%), Gaps = 58/442 (13%)

Query: 12  PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARF--FN 69
           P+P+      +   ++ +H  +  I+Q R      +L+  E K   D     H  +   +
Sbjct: 48  PFPDYSPRKPSVTDTDFVHHISTTIKQRRAEPFRRILKPFESKFRPD-----HLIWVLMS 102

Query: 70  VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-- 127
           +    K + + F + +L  +P+L +  +++ +  +SKD   A    RLV E   K     
Sbjct: 103 IRDDYKLVLDFFDWARLRRDPSLESLCIVVQIAVASKDLRMAH---RLVFEFWEKPHLDV 159

Query: 128 -----KLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
                +    LI T    G    +F+      V F  L+ A G      + FD L     
Sbjct: 160 GNSFDRFTERLIYTYKDWGAHPLVFD------VFFQVLVEA-GLLLEAGKLFDKLLNYGV 212

Query: 183 EVHPVDPDHITIGALMKA-------------------CANA----------GQVDRAREV 213
            V  VD  ++ +  L  +                   C N            Q+ + +E 
Sbjct: 213 LV-SVDSCNLFLARLSNSFDGIRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEA 271

Query: 214 YKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           + ++ +   +G  P+V  Y++ ++   Q         + +++ +KG+ P++   +++I F
Sbjct: 272 HSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISF 331

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G+V  A ++L+  KNQ I    + Y++L+     + N     +L++ MK  K+ P 
Sbjct: 332 LCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPD 391

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
             T  ++I  LC   ++ +  ++ S+M S GL P+ +TY+ L+    +  +++    L +
Sbjct: 392 FVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHN 451

Query: 391 QAKEDGVIPNLVMFKCII-GMC 411
           Q  E G+ PN+V +  ++ G+C
Sbjct: 452 QMVEKGLTPNVVTYTALVDGLC 473



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/257 (20%), Positives = 112/257 (43%), Gaps = 24/257 (9%)

Query: 23  HDVSEQ-----LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H++SE+     + +YN LI    + G I + + L+E+M+  G       Y       CK 
Sbjct: 486 HEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKM 545

Query: 74  QKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
            +  K A    +++ +    PT+ TFN+LM+    S   E   ++++ + + G+  +   
Sbjct: 546 GEMAK-AHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATT 604

Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           + +L+        + A  E         V PD   +N LI    ++  +  A+ +  EM 
Sbjct: 605 FNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMV 664

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
            +   +     +  +L+K      + + AR++++ +  +      E+Y I ++   + G+
Sbjct: 665 EKGFSLTA--ASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGN 722

Query: 242 WEFACSVYDDMTKKGVI 258
           WE    + D+  +K ++
Sbjct: 723 WENTLELCDEAIEKCLV 739


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 129/548 (23%), Positives = 226/548 (41%), Gaps = 47/548 (8%)

Query: 18  HANYAHDVSEQLH---SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNV 70
           +  +A   +E++H   +YN L+    R         +LE+M   G      +      N 
Sbjct: 111 YFQWAEKQTEKVHCPEAYNSLLMVMARNTEFDHLERILEEMSLSGFGPSSNISIELVANC 170

Query: 71  CKSQKAIKEAF------RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
            KS+K ++EAF      R FK    P  S + +L+   +  ++ +    +   +QE G +
Sbjct: 171 VKSRK-LREAFDIIQTMRKFKF--RPAFSAYTILIGALSEVREPDPMLILFHQMQELGYE 227

Query: 125 ADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDV 176
            +  L+TTLI   A+ G+VDA           ++  D V++N  I   G++G VD ++  
Sbjct: 228 VNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKF 287

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
             EM +  H + PD +T  +++     A ++D A E+++ + +         Y   I   
Sbjct: 288 FHEMKS--HGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGY 345

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
              G ++ A  + +    KG IP  +  + ++   G   +VE A  I +E K   +   +
Sbjct: 346 GSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVP-NV 404

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
            +Y+ L+           ALE+ + M+   L P V T+N +I  LC   +L +   +   
Sbjct: 405 PTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEG 464

Query: 357 MKSLGLCPNTITYSIL---LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---M 410
           M      PN +T+S L   L  C R DD      L  +  + G +P  +++  +I     
Sbjct: 465 MDDKVCTPNAVTFSSLIDGLGKCGRVDD---AYSLYEKMLDCGHVPGAIVYTSLIRSFFK 521

Query: 411 CSRRYEKARTLNEHVLSFNSGRPQIENKW---------TSLALMVYREAIVAGTIPTVEV 461
           C R+ +  +   E V +  S    + N +         T     ++RE    G IP    
Sbjct: 522 CGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARS 581

Query: 462 VSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAA 519
            S ++  L     A+    L   +      L      ++IDGF +     +A+ LLEE  
Sbjct: 582 YSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMK 641

Query: 520 SFGIVPCV 527
             G  P V
Sbjct: 642 VKGHPPTV 649



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 100/437 (22%), Positives = 189/437 (43%), Gaps = 54/437 (12%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
            D    + +YN LI    R+G+++  +++ +DMER GL       +     +CK+QK ++
Sbjct: 398 RDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQK-LE 456

Query: 79  EAFRFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA   F+     V  P   TF+ L+         + A+ +   + + G      +YT+LI
Sbjct: 457 EACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLI 516

Query: 135 TTCAKSGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
            +  K G+ +         +     PD  + N  +    ++G  ++   +  E+NA  H 
Sbjct: 517 RSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINA--HG 574

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMI---------HKYN---------------- 221
             PD  +   L+     AG  +   E++  +         H YN                
Sbjct: 575 FIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAY 634

Query: 222 -------IKGTPEV---YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
                  +KG P     Y   I+  ++    + A  ++++    G+  + V  S+LID  
Sbjct: 635 QLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGF 694

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
           G  G+++ A+ I++E   +G++  + +++ L+ A   A+   +AL  ++ MK +K  P  
Sbjct: 695 GKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQ 754

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T + LI  LC   +  K      +M+ LGL PNTITY+ ++    +  ++     L S+
Sbjct: 755 ITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSR 814

Query: 392 AKEDGVIPNLVMFKCII 408
            K +G IP+   +  +I
Sbjct: 815 FKANGGIPDSASYNAMI 831



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 123/527 (23%), Positives = 215/527 (40%), Gaps = 63/527 (11%)

Query: 28  QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-----KSQKAIK 78
            +H +  LIR    +GR+   + LL++M+   L D D V     +NVC     K+ K + 
Sbjct: 229 NVHLFTTLIRVFAREGRVDAALSLLDEMKSNSL-DADIV----LYNVCIDCFGKAGK-VD 282

Query: 79  EAFRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL-YT 131
            +++FF       L+P+    T +M+  +C +++  E      +L  E   K  C   Y 
Sbjct: 283 MSWKFFHEMKSHGLMPDDVTYT-SMIGVLCKANRLDEAVELFEQL--EQNRKVPCAYAYN 339

Query: 132 TLITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           T+I     +GK D    + E  K     P  + +N ++T  G+   V+ A  +  EM  +
Sbjct: 340 TMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRD 399

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
             P  P   T   L+      G+++ A E+   + +  +        I I+   +    E
Sbjct: 400 AVPNVP---TYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQKLE 456

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            ACS+++ M  K   P+ V  S+LID  G  G+V+ A+ + ++  + G   G I Y+SL+
Sbjct: 457 EACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLI 516

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
            +       +   ++Y+ M      P ++ +N  +  +    +  K   +  ++ + G  
Sbjct: 517 RSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFI 576

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLN 422
           P+  +YSIL+    +         L    KE G + +   +  +I G C     K+  +N
Sbjct: 577 PDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFC-----KSGKVN 631

Query: 423 EHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLV 482
           +                   A  +  E  V G  PTV     V+  L      D    L 
Sbjct: 632 K-------------------AYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLF 672

Query: 483 ENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCV 527
           E    +   L      SLIDGFG+      A+ ++EE    G+ P V
Sbjct: 673 EEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNV 719



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 95/440 (21%), Positives = 175/440 (39%), Gaps = 37/440 (8%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAM--------F 147
           +++ V    KD+  A    +  ++   K  C + Y +L+   A++ + D +         
Sbjct: 94  LVIGVLKRLKDANTAVNYFQWAEKQTEKVHCPEAYNSLLMVMARNTEFDHLERILEEMSL 153

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
               P   +   L+  C +S  +  AFD++  M        P       L+ A +   + 
Sbjct: 154 SGFGPSSNISIELVANCVKSRKLREAFDIIQTMRK--FKFRPAFSAYTILIGALSEVREP 211

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D    ++  + +   +    ++T  I   ++ G  + A S+ D+M    +  D V  +  
Sbjct: 212 DPMLILFHQMQELGYEVNVHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLYNVC 271

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ID  G AGKV+ +++   E K+ G+    ++Y+S++G    A    +A+EL+E ++  + 
Sbjct: 272 IDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRK 331

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P     N +I       +  +   +L   K+ G  P+ I Y+ +L    +K  VE  L 
Sbjct: 332 VPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALR 391

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVY 447
           +  + K D V PN+  +  +I M  R                      E K  + AL + 
Sbjct: 392 IFEEMKRDAV-PNVPTYNILIDMLCR----------------------EGKLNA-ALEIR 427

Query: 448 REAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEY 507
            +   AG  P V  V+ ++  L      +    + E +             SLIDG G+ 
Sbjct: 428 DDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKC 487

Query: 508 D--PRAFSLLEEAASFGIVP 525
                A+SL E+    G VP
Sbjct: 488 GRVDDAYSLYEKMLDCGHVP 507



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 161/405 (39%), Gaps = 52/405 (12%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           GR+ +   L E M   G +    VY +    FF   + +   K          +P L+  
Sbjct: 488 GRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLI 547

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           N  M     + ++E    + R +   G   D + Y+ LI    K+G  +  +E       
Sbjct: 548 NTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKE 607

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
                D   +NA+I    +SG V++A+ +L EM  + HP  P  +T G+++   A   ++
Sbjct: 608 QGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHP--PTVVTYGSVIDGLAKIDRL 665

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD------- 260
           D A  +++      IK    VY+  I+   + G  + A  + +++ +KG+ P+       
Sbjct: 666 DEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCL 725

Query: 261 ----------------------------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
                                       ++  S LI+      K   AF   QE +  G+
Sbjct: 726 LDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGL 785

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
               I+Y++++   + A N  +A  L+   K+    P  ++ NA+I  L   ++      
Sbjct: 786 KPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYA 845

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVE----VGLMLLSQAK 393
           +  + +  G   +T T  +LL A  + + +E    VG +L   AK
Sbjct: 846 LFEETRLKGCNIHTKTCVVLLDALHKAECLEQAAIVGAVLKETAK 890


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 187/408 (45%), Gaps = 20/408 (4%)

Query: 23  HDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V+  +++YN L+R    +GR+ E + ++ DM   G       Y+      C++ + + 
Sbjct: 146 HGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE-LD 204

Query: 79  EAFRFFKLV-----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            A R   L+       P L TFN +++    +   EGA +V   +   GL  D   Y TL
Sbjct: 205 GAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTL 264

Query: 134 ITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           ++   K G +    A+F  +      PD V F +LI A  ++G +++A  ++A+M     
Sbjct: 265 LSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER-- 322

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            +  + +T  AL+      G +D A    + + K  I+ +   Y   IN   + G  + A
Sbjct: 323 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 382

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +  +M  K V PD V  S +I      G +++AF++ Q+   +G+    I+YSSL+  
Sbjct: 383 RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRG 442

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
               K    A EL+E+M  + ++P   T   LI   C    + K + +  +M   G+ P+
Sbjct: 443 LCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 502

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            +TYS+L+    +    +    LL +   +  +P+ + +  ++  CS+
Sbjct: 503 VVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSK 550



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 170/402 (42%), Gaps = 62/402 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + GR+     + ++M R+GL      Y+      CK    + E+   F  +     
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKV-GCLHESLAVFSEMTQRGL 289

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
            P + TF  L+     + + E A  ++  ++E GL+ +   +T LI    K G +D    
Sbjct: 290 VPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALL 349

Query: 145 AMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHP------------- 186
           A+ E     ++P  V +NALI    + G +D A +++ EM A+ V P             
Sbjct: 350 AVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 409

Query: 187 -------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                              V PD IT  +L++      +++ A E+++ + +  ++    
Sbjct: 410 KVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF 469

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            YT  I+   + G+ E A S++D+M +KGV+PD V  S LI+    + + + A  +L + 
Sbjct: 470 TYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL 529

Query: 288 KNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPTVS 332
            ++      I Y +LM  CS A+                 ++A ++Y+ M     K   S
Sbjct: 530 YHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGS 589

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
             + LI   C G  + K +     M   G  PN+ T +I LV
Sbjct: 590 VYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNS-TSTISLV 630



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 113/285 (39%), Gaps = 32/285 (11%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFF 84
           YN LI    + GR+    +L+ +ME K +      Y       CK      A +   +  
Sbjct: 366 YNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKML 425

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K    P   T++ L+      K    A ++   + + G++ D   YTTLI    K G V+
Sbjct: 426 KKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVE 485

Query: 145 AMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                      + V PD V ++ LI    +S     A  +L ++  E  PV PD+I   A
Sbjct: 486 KALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHE-DPV-PDNIKYDA 543

Query: 197 LMKACANA---------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
           LM  C+ A               G +  A +VY+ +   N K    VY+I I+   + G+
Sbjct: 544 LMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGN 603

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
              A S +  M + G  P+     +L+      G V  A   +Q+
Sbjct: 604 VRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQD 648



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P+V   NA++ AL D   LP     LS M   G+ PN  TY+IL+ A   +  +E  + +
Sbjct: 116 PSVPAYNAVLLALSDA-SLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGV 174

Query: 389 LSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
           +   +  G  PN V +  ++    R  E
Sbjct: 175 VGDMRGAGCAPNAVTYNTLVAAFCRAGE 202


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 187/408 (45%), Gaps = 20/408 (4%)

Query: 23  HDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V+  +++YN L+R    +GR+ E + ++ DM   G       Y+      C++ + + 
Sbjct: 146 HGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE-LD 204

Query: 79  EAFRFFKLV-----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            A R   L+       P L TFN +++    +   EGA +V   +   GL  D   Y TL
Sbjct: 205 GAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTL 264

Query: 134 ITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           ++   K G +    A+F  +      PD V F +LI A  ++G +++A  ++A+M     
Sbjct: 265 LSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRER-- 322

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            +  + +T  AL+      G +D A    + + K  I+ +   Y   IN   + G  + A
Sbjct: 323 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 382

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +  +M  K V PD V  S +I      G +++AF++ Q+   +G+    I+YSSL+  
Sbjct: 383 RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRG 442

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
               K    A EL+E+M  + ++P   T   LI   C    + K + +  +M   G+ P+
Sbjct: 443 LCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 502

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            +TYS+L+    +    +    LL +   +  +P+ + +  ++  CS+
Sbjct: 503 VVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSK 550



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 170/402 (42%), Gaps = 62/402 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + GR+     + ++M R+GL      Y+      CK    + E+   F  +     
Sbjct: 231 NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKV-GCLHESLAVFSEMTQRGL 289

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
            P + TF  L+     + + E A  ++  ++E GL+ +   +T LI    K G +D    
Sbjct: 290 VPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALL 349

Query: 145 AMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHP------------- 186
           A+ E     ++P  V +NALI    + G +D A +++ EM A+ V P             
Sbjct: 350 AVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 409

Query: 187 -------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                              V PD IT  +L++      +++ A E+++ + +  ++    
Sbjct: 410 KVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF 469

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            YT  I+   + G+ E A S++D+M +KGV+PD V  S LI+    + + + A  +L + 
Sbjct: 470 TYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL 529

Query: 288 KNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPTVS 332
            ++      I Y +LM  CS A+                 ++A ++Y+ M     K   S
Sbjct: 530 YHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGS 589

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
             + LI   C G  + K +     M   G  PN+ T +I LV
Sbjct: 590 VYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNS-TSTISLV 630



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 114/286 (39%), Gaps = 34/286 (11%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF----RF 83
           YN LI    + GR+    +L+ +ME K +      Y       CK    +  AF    + 
Sbjct: 366 YNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN-LDSAFQLNQKM 424

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K    P   T++ L+      K    A ++   + + G++ D   YTTLI    K G V
Sbjct: 425 LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNV 484

Query: 144 DAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +           + V PD V ++ LI    +S     A  +L ++  E  PV PD+I   
Sbjct: 485 EKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHE-DPV-PDNIKYD 542

Query: 196 ALMKACANA---------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
           ALM  C+ A               G +  A +VY+ +   N K    VY+I I+   + G
Sbjct: 543 ALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGG 602

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           +   A S +  M + G  P+     +L+      G V  A   +Q+
Sbjct: 603 NVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQD 648



 Score = 43.5 bits (101), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P+V   NA++ AL D   LP     LS M   G+ PN  TY+IL+ A   +  +E  + +
Sbjct: 116 PSVPAYNAVLLALSDA-SLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGV 174

Query: 389 LSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
           +   +  G  PN V +  ++    R  E
Sbjct: 175 VGDMRGAGCAPNAVTYNTLVAAFCRAGE 202


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 162/323 (50%), Gaps = 12/323 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           ++  L++    + ++  A ++LR++++   + +  +Y+ +I    K   V+  ++     
Sbjct: 117 SYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEM 176

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               + P+ + +N LI A   +G +  AF +L EM   +  ++PD  T   L+ A    G
Sbjct: 177 DAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEM--ILKNINPDVYTFSILIDALCKEG 234

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +   A++++  + +  +      Y I IN   +    + A ++  +M  K ++PD V  +
Sbjct: 235 K--NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYN 292

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           +LID    +G++ +A  ++ E  ++G    +++Y+SL+ A    +N  KA  L+  MK  
Sbjct: 293 SLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKER 352

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            ++PT+ T  ALI  LC G +L    E+   +   G C +  TY++++    ++   +  
Sbjct: 353 GIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEA 412

Query: 386 LMLLSQAKEDGVIPNLVMFKCII 408
           L + S+ +++G IPN V F+ II
Sbjct: 413 LAIKSKMEDNGCIPNAVTFEIII 435



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 147/341 (43%), Gaps = 15/341 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G     I LL  +E +       +Y A    +CK  K + EA+  +  +     
Sbjct: 123 NGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKD-KLVNEAYDLYSEMDAREI 181

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-----V 143
            P + T+N L+     +    GAF +L  +    +  D   ++ LI    K GK      
Sbjct: 182 FPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKNAKQIF 241

Query: 144 DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKAC 201
            AM +  V P+   +N +I    +   VD A ++L EM   +H  + PD +T  +L+   
Sbjct: 242 HAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREM---LHKNMVPDTVTYNSLIDGL 298

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             +G++  A  +   +H          YT  ++   +  + + A +++  M ++G+ P  
Sbjct: 299 CKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTM 358

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              +ALID     G+++ A E+ Q    +G  + + +Y+ ++        + +AL +   
Sbjct: 359 YTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSK 418

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           M+     P   T   +I +L + D+  K  ++L +M + GL
Sbjct: 419 MEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 459



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 140/320 (43%), Gaps = 19/320 (5%)

Query: 128 KLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
           K Y T+I+    S ++D   + ++ + V  + LI      G +  +F +L ++    +  
Sbjct: 24  KYYLTVISL---SKQMDV--KGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYX- 77

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P+ IT   LMK     G+V +    +  +     +     Y   +N   +TG+   A  
Sbjct: 78  -PNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIK 136

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +   +  +   P+ V  SA+ID       V  A+++  E   + I   +I+Y++L+ A  
Sbjct: 137 LLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFC 196

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            A     A  L   M    + P V T + LI ALC   +  K  ++   M  +G+ PN  
Sbjct: 197 LAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKNAK--QIFHAMVQMGVNPNVY 254

Query: 368 TYSIL---LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLN 422
           +Y+I+   L  C+R D+    + LL +     ++P+ V +  +I G+C S R   A  L 
Sbjct: 255 SYNIMINGLCKCKRVDE---AMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLM 311

Query: 423 EHVLSFNSGRPQIENKWTSL 442
             +   + G+P     +TSL
Sbjct: 312 NEM--HHRGQPADVVTYTSL 329



 Score = 42.7 bits (99), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 21/171 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + GRI+  ++L+ +M  +G       Y +    +CK+Q   K    F K+
Sbjct: 290 TYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKM 349

Query: 87  VP---NPTLSTFNMLMS-VCASS--KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                 PT+ T+  L+  +C     K+++  FQ L LV+  G   D   YT +I+   K 
Sbjct: 350 KERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHL-LVK--GCCIDVWTYTVMISGLCKE 406

Query: 141 GKVD-------AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           G  D        M +N   P+ V F  +I +  +    D+A  +L EM A+
Sbjct: 407 GMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAK 457



 Score = 39.7 bits (91), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 44/88 (50%)

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           II ++ ++G+    K +   + L + M    ++  + T++ LI   C   Q+  +  +L 
Sbjct: 10  IIEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLG 69

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVE 383
            +  LG  PNTIT++ L+     K +V+
Sbjct: 70  KILKLGYXPNTITWTTLMKGLCLKGEVK 97


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 169/357 (47%), Gaps = 18/357 (5%)

Query: 82  RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +  KL   P++ T N L++  C  ++ SE    V ++V E G + D   +TTL+    + 
Sbjct: 125 KMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV-EMGYQPDTVTFTTLVHGLFQH 183

Query: 141 GKVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            K     A+ E +     +PD V + A+I    + G  D A ++L +M  E   ++ D +
Sbjct: 184 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKM--EKGKIEADVV 241

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYD 250
               ++ +      VD A  ++  +    I+  P+V+T +  I+C    G W  A  +  
Sbjct: 242 IYSTVIDSLCKYRHVDDALNLFTEMDNKGIR--PDVFTYSSLISCLCNYGRWSDASRLLS 299

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           DM ++ + P+ V  ++LID     GK+  A ++  E   + I   I++Y+SL+       
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 359

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
              +A +++  M S    P V T N LI   C   ++   ME+  DM   GL  NT+TY+
Sbjct: 360 RLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYT 419

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
            L+    +  D +   M+  Q   DGV PN++ +  ++ G+C   + EKA  + E++
Sbjct: 420 TLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 178/403 (44%), Gaps = 17/403 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           N      RISE + L++ M   G     +    + H   F   K+ +A+    R      
Sbjct: 143 NGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHG-LFQHNKASEAVALVERMVVKGC 201

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            P L T+  +++      + + A  +L  +++  ++AD  +Y+T+I +  K   VD    
Sbjct: 202 QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALN 261

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                  + ++PD   +++LI+     G    A  +L++M      ++P+ +T  +L+ A
Sbjct: 262 LFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLER--KINPNVVTFNSLIDA 319

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A  G++  A +++  + + +I      Y   IN        + A  ++  M  K  +PD
Sbjct: 320 FAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 379

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + LI+    A KV    E+ ++   +G+    ++Y++L+     A +   A  +++
Sbjct: 380 VVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFK 439

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M S  + P + T N L+  LC   +L K M V   ++   + P+  TY+I+     +  
Sbjct: 440 QMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAG 499

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY-EKARTL 421
            VE G  L       GV P+++ +  +I G C +   E+A TL
Sbjct: 500 KVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTL 542



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 176/396 (44%), Gaps = 15/396 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           L +  + SE + L+E M  KG       Y A    +CK  +   A+    +  K      
Sbjct: 180 LFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEAD 239

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--------V 143
           +  ++ ++      +  + A  +   +   G++ D   Y++LI+     G+         
Sbjct: 240 VVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLS 299

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           D +   + P+ V FN+LI A  + G +  A  +  EM      +DP+ +T  +L+     
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR--SIDPNIVTYNSLINGFCM 357

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             ++D A++++ ++   +       Y   IN   +         ++ DM+++G++ + V 
Sbjct: 358 HDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVT 417

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHM 322
            + LI     A   + A  + ++  + G+   I++Y++L+ G C N K  +KA+ ++E++
Sbjct: 418 YTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGK-LEKAMVVFEYL 476

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           +  K++P + T N +   +C   ++    ++   +   G+ P+ I Y+ ++    +K   
Sbjct: 477 QKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLK 536

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
           E    L  + KEDG +P+   +  +I    R  +KA
Sbjct: 537 EEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKA 572



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 159/364 (43%), Gaps = 21/364 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G     ++LL  ME KG ++ D V ++   +     + + +A   F  + N   
Sbjct: 213 NGLCKRGEPDLALNLLNKME-KGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGI 271

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P + T++ L+S   +      A ++L  + E  +  +   + +LI   AK GK+     
Sbjct: 272 RPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEK 331

Query: 144 --DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             D M + ++ P+ V +N+LI        +D A  +   M ++     PD +T   L+  
Sbjct: 332 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK--DCLPDVVTYNTLING 389

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              A +V    E+++ + +  + G    YT  I+   Q  D + A  V+  M   GV P+
Sbjct: 390 FCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPN 449

Query: 261 EVFLSALIDFAGHAGKVEAA---FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            +  + L+D     GK+E A   FE LQ++K   +   I +Y+ +      A   +   +
Sbjct: 450 IMTYNTLLDGLCKNGKLEKAMVVFEYLQKSK---MEPDIYTYNIMSEGMCKAGKVEDGWD 506

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L+  +    +KP V   N +I+  C      +   +   MK  G  P++ TY+ L+ A  
Sbjct: 507 LFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHL 566

Query: 378 RKDD 381
           R  D
Sbjct: 567 RDGD 570



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 144/340 (42%), Gaps = 29/340 (8%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPN 89
           L   GR S+   LL DM ERK  ++ + V      +    +  + EA + F    +   +
Sbjct: 285 LCNYGRWSDASRLLSDMLERK--INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 342

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM-- 146
           P + T+N L++        + A Q+  L+       D   Y TLI    K+ KV D M  
Sbjct: 343 PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMEL 402

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F ++       + V +  LI    Q+   D A  V  +M ++   V P+ +T   L+   
Sbjct: 403 FRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSD--GVHPNIMTYNTLLDGL 460

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI---NCCSQ---TGDWEFACSVYDDMTKK 255
              G++++A  V++ + K  ++  P++YT  I     C        W+  CS    ++ K
Sbjct: 461 CKNGKLEKAMVVFEYLQKSKME--PDIYTYNIMSEGMCKAGKVEDGWDLFCS----LSLK 514

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           GV PD +  + +I      G  E A+ +  + K  G      +Y++L+ A     +   +
Sbjct: 515 GVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAAS 574

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
            EL + M+S +     ST   +   L DG      +EVLS
Sbjct: 575 AELIKEMRSCRFAGDASTYGLVTDMLHDGRLDKGFLEVLS 614



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/237 (19%), Positives = 100/237 (42%), Gaps = 12/237 (5%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  ++ +M K    P  V  S L+       K +      ++ +  G+S  + +Y+ ++ 
Sbjct: 49  AVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMIN 108

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                     AL +   M  +   P++ T+N+L+   C G+++ + + ++  M  +G  P
Sbjct: 109 CLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQP 168

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 413
           +T+T++ L+    + +     + L+ +    G  P+LV +  +I G+C R          
Sbjct: 169 DTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLL 228

Query: 414 -RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
            + EK +   + V+         + +    AL ++ E    G  P V   S ++ CL
Sbjct: 229 NKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 135/261 (51%), Gaps = 2/261 (0%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D   F  +I  C ++G ++++FD+L E+        P+ +    L+  C   G++++A++
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELRE--FGFSPNVVIYTTLIDGCCKKGEIEKAKD 219

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           ++  + K+ +      YT+ I+   + G  +    +Y+ M + GV P+    + +++   
Sbjct: 220 LFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLC 279

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
             G+ + AF++  E + +G+S  I++Y++L+G         +A ++ + MKS  + P + 
Sbjct: 280 KDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLI 339

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N LI   C   +L K + +  D+KS GL P+ +TY++L+    RK D      ++ + 
Sbjct: 340 TYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEM 399

Query: 393 KEDGVIPNLVMFKCIIGMCSR 413
           +E G+ P+ V +  +I   +R
Sbjct: 400 EERGIKPSKVTYTILIDTFAR 420



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 158/334 (47%), Gaps = 18/334 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT--TLITTCAKSGKVDAMF 147
           P  + FN L++    S       Q      E+ +K    +Y+   +I  C ++G+++  F
Sbjct: 127 PGSNCFNNLLTFVVGSSSFN---QWWCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSF 183

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +           P+ V++  LI  C + G +++A D+  EM      +  +  T   L+ 
Sbjct: 184 DLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGK--FGLVANEWTYTVLIH 241

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G   +  E+Y+ + ++ +      Y   +N   + G  + A  V+D+M ++GV  
Sbjct: 242 GLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSC 301

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALEL 318
           + V  + LI       K   A +++ + K+  I+  +I+Y++L+ G CS  K   KAL L
Sbjct: 302 NIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGK-LGKALSL 360

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
              +KS  L P++ T N L++  C         +++ +M+  G+ P+ +TY+IL+    R
Sbjct: 361 CRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFAR 420

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            D++E  + L S  +E G++P++  +  +I G C
Sbjct: 421 SDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFC 454



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 145/327 (44%), Gaps = 11/327 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEN 149
           +F +++  C  + + E +F +L  ++E G   +  +YTTLI  C K G++    D  FE 
Sbjct: 165 SFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224

Query: 150 VK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
            K     +   +  LI    ++G   + F++  +M  + H V P+  T   +M      G
Sbjct: 225 GKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKM--QEHGVFPNLYTYNCVMNQLCKDG 282

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +   A +V+  + +  +      Y   I    +      A  V D M    + P+ +  +
Sbjct: 283 RTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYN 342

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LID     GK+  A  + ++ K++G+S  +++Y+ L+       +   A ++ + M+  
Sbjct: 343 TLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEER 402

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            +KP+  T   LI      D +   +++ S M+ LGL P+  TYS+L+     K  +   
Sbjct: 403 GIKPSKVTYTILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEA 462

Query: 386 LMLLSQAKEDGVIPNLVMFKC-IIGMC 411
             L     E  + PN V++   I+G C
Sbjct: 463 SRLFKSMVEKMLEPNEVIYNTMILGYC 489



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 149/356 (41%), Gaps = 19/356 (5%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-----LVPNPTLS 93
           G I +  DLL ++   G      +Y       CK  +  K    FF+     LV N    
Sbjct: 177 GEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEW-- 234

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           T+ +L+     +   +  F++   +QE G+  +   Y  ++    K G+    F+     
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEM 294

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               V  + V +N LI    +    + A  V+ +M + V  ++P+ IT   L+    + G
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYV--INPNLITYNTLIDGFCSVG 352

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++ +A  + + +    +  +   Y + ++   + GD   A  +  +M ++G+ P +V  +
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYT 412

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LID    +  +E A ++    +  G+   + +YS L+          +A  L++ M   
Sbjct: 413 ILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEK 472

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VAC-ERK 379
            L+P     N +I   C      + + +  DM+   L PN  +YS L+ V C ERK
Sbjct: 473 MLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERK 528



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 124/287 (43%), Gaps = 21/287 (7%)

Query: 23  HDVSEQLHSYN----RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V   L++YN    +L + GR  +   + ++M  +G+      Y+     +C+  KA  
Sbjct: 262 HGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKA-N 320

Query: 79  EAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA +        V NP L T+N L+    S      A  + R ++  GL      Y  L+
Sbjct: 321 EANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLV 380

Query: 135 TTCAKSGK-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
           +   + G        V  M E  +KP +V +  LI    +S  ++ A  + + M  E   
Sbjct: 381 SGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSM--EELG 438

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY-TIAINCCSQTGDWEFA 245
           + PD  T   L+      GQ++ A  ++K + +  ++    +Y T+ +  C +   +  A
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYR-A 497

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
             ++ DM +K + P+    S LI       K++ A +++++  + GI
Sbjct: 498 LRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGI 544



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 139/322 (43%), Gaps = 17/322 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L + G   +  ++ E M+  G+      Y+     +CK  +  K+AF+ F  +    +S 
Sbjct: 243 LFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRT-KDAFKVFDEMRERGVSC 301

Query: 94  ---TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TTCAKSGKVDAM 146
              T+N L+  +C   K +E A +V+  ++   +  +   Y TLI    +  K GK  ++
Sbjct: 302 NIVTYNTLIGGLCREMKANE-ANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSL 360

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             ++K     P  V +N L++   + G    A  ++ EM  E   + P  +T   L+   
Sbjct: 361 CRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEM--EERGIKPSKVTYTILIDTF 418

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A +  ++ A ++   + +  +      Y++ I+     G    A  ++  M +K + P+E
Sbjct: 419 ARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNE 478

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + +I      G    A  + ++ + + ++  + SYS L+      +  ++A +L E 
Sbjct: 479 VIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEK 538

Query: 322 MKSIKLKPTVSTMNALITALCD 343
           M    + P+ +  N +  A  D
Sbjct: 539 MIDSGIDPSDTICNLISRAKTD 560


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 176/382 (46%), Gaps = 14/382 (3%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            ++ +  I E I   E +    +   D V       +CK +KA+     F K   N    P
Sbjct: 735  ILTEAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHP 794

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            TL ++N LM     S  +E A ++   ++ AG   +   Y  L+    KS +++ +++  
Sbjct: 795  TLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLY 854

Query: 149  ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                    +P+ +  N +I+A  +S  +++A D+  E+ +      P   T G L+    
Sbjct: 855  SEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMS--GDFSPTPCTYGPLIDGLL 912

Query: 203  NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             AG+ ++A ++++ +  Y       +Y I IN   ++G+ +FAC ++  M K+G+ PD  
Sbjct: 913  KAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLK 972

Query: 263  FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
              + L++     G+++ A +  +E K  G+    +SY+ ++     ++   +AL L+  M
Sbjct: 973  SYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEM 1032

Query: 323  KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            K+  + P + T NALI  L    ++   +++  +++ +GL P+  TY+ L+       + 
Sbjct: 1033 KNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNK 1092

Query: 383  EVGLMLLSQAKEDGVIPNLVMF 404
            +    +  +    G  PN   F
Sbjct: 1093 DQAFSVFKKMMVVGCSPNTETF 1114



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 179/389 (46%), Gaps = 15/389 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R+G   + ++LLE+M+  GL      Y      + ++++ I +A+  FK + +    P +
Sbjct: 247 RRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARR-IDDAWGIFKEMDDEGCGPDV 305

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM------ 146
            T+ +L+    ++   + A ++   ++ +    D   Y TL+    K G ++ +      
Sbjct: 306 ITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNE 365

Query: 147 --FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
              +   PD V +  LI A  +SG VDRAFD+L  M  +   + P+  T   ++     A
Sbjct: 366 MEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTK--GIFPNLHTYNTMICGLLKA 423

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
            ++D A E+ + +    +K T   Y + I+   ++GD   A   ++ M K+G++P     
Sbjct: 424 RRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAAC 483

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           +A +      G++  A +I  +    G+S   ++Y+ LM   S A    KA +L   M S
Sbjct: 484 NASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMIS 543

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
              +P V  +N+LI  L    ++    ++   +K+L L P  +TY+ILL    ++  +  
Sbjct: 544 KGCEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILK 603

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            L L     E G  PN + F  ++   S+
Sbjct: 604 ALELFGSMTESGCPPNTITFNSLLDCLSK 632



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 138/313 (44%), Gaps = 10/313 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T+ +L+     S D + AF +L ++   G+  +   Y T+I    K+ ++D   E 
Sbjct: 373 PDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALEL 432

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   VKP    +   I   G+SG   +A D    M      + P      A +   
Sbjct: 433 LENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKR--GIMPSIAACNASLYTL 490

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A  G++  A +++  +HK  +      Y + + C S+ G  + A  +  +M  KG  PD 
Sbjct: 491 AETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDV 550

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           + +++LI+    AG+V+AA+++    KN  ++  +++Y+ L+          KALEL+  
Sbjct: 551 MIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGS 610

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M      P   T N+L+  L   D +   +++   M  +   P+ +TY+ ++    R+  
Sbjct: 611 MTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGR 670

Query: 382 VEVGLMLLSQAKE 394
           ++       Q K+
Sbjct: 671 IDYAFWFFHQMKK 683



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 123/622 (19%), Positives = 233/622 (37%), Gaps = 112/622 (18%)

Query: 22   AHDVSEQLH---------SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFF 68
            A D+   LH         +YN L++     G+I +   LL +M  KG  + D +      
Sbjct: 499  AEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGC-EPDVMIINSLI 557

Query: 69   NVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-- 122
            N       +  A++ F  + N    PT+ T+N+L++          A ++   + E+G  
Sbjct: 558  NTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCP 617

Query: 123  ----------------------LKADCKL-----------YTTLITTCAKSGKVDAMF-- 147
                                  LK  C++           Y T+I    + G++D  F  
Sbjct: 618  PNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWF 677

Query: 148  -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM---------------------- 180
                 + + PD V    LI    + G V+ A  V+ E                       
Sbjct: 678  FHQMKKFLSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILT 737

Query: 181  NAEVHPV-------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
             AE+                  DH+ +  +   C     +D      K      I  T E
Sbjct: 738  EAEIEEAISFAEILVCNSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLE 797

Query: 228  VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
             Y   ++    +   E A  +++DM   G  P+    + L+D  G + ++   +++  E 
Sbjct: 798  SYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEM 857

Query: 288  KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
            +++G     I+++ ++ A   + N  KAL+LY  + S    PT  T   LI  L    + 
Sbjct: 858  RSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRS 917

Query: 348  PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK-- 405
             + M++  +M   G  PN++ Y+IL+    +  +++    L  +  ++G+ P+L  +   
Sbjct: 918  EQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTIL 977

Query: 406  ----CIIGMCSRRYE-----KARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGT 455
                CI G      +     K   L+   +S+N     + +++    AL ++ E    G 
Sbjct: 978  VECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGI 1037

Query: 456  IPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAF 512
             P +   + ++  L +    D+  ++ E L +           +LI G    G  D +AF
Sbjct: 1038 SPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKD-QAF 1096

Query: 513  SLLEEAASFGIVPCV-SFKEIP 533
            S+ ++    G  P   +F ++P
Sbjct: 1097 SVFKKMMVVGCSPNTETFAQLP 1118



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/349 (19%), Positives = 148/349 (42%), Gaps = 16/349 (4%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           YA DV         L + G +    D+L+ M  KG+      Y+     + K+++ + EA
Sbjct: 371 YAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARR-LDEA 429

Query: 81  FRFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
               +    L   PT  ++ + +     S D   A      +++ G+          + T
Sbjct: 430 LELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYT 489

Query: 137 CAKSGKV---DAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
            A++G++   + +F +     + PD V +N L+    ++G +D+A  +L+EM ++    +
Sbjct: 490 LAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISK--GCE 547

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD + I +L+     AG+VD A +++  +    +  T   Y I +    + G    A  +
Sbjct: 548 PDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALEL 607

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +  MT+ G  P+ +  ++L+D       V+ A ++         +  +++Y++++     
Sbjct: 608 FGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIR 667

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
                 A   +  MK   L P   T+  LI  +    ++   ++V+ + 
Sbjct: 668 EGRIDYAFWFFHQMKKF-LSPDYVTLCTLIPGVVRHGRVEDAIKVVMEF 715



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 143/366 (39%), Gaps = 16/366 (4%)

Query: 70  VCKSQKAIKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           + KS      AF +FK+V        T    N ++ +    +  E    V  L+Q+  + 
Sbjct: 104 ILKSISDPNSAFSYFKIVSQLTNFVHTTDACNYMLEILREQRRIEDMVFVFDLMQKKVIY 163

Query: 125 ADCKLYTTLITTCAKSGKVD-AMFENVKPDRVVF-------NALITACGQSGAVDRAFDV 176
            +   Y T+    +  G +  A F   K   V F       N LI      G  + A  V
Sbjct: 164 RNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLL-LPGFCNEALKV 222

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
              M +E   + P   T  ALM A    G   +   + + +    ++     YTI I   
Sbjct: 223 YKRMISE--GMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRAL 280

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            +    + A  ++ +M  +G  PD +  + LID    AGK++ A E+  + +    S   
Sbjct: 281 GRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDR 340

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           ++Y +LM       + +     +  M+     P V T   LI ALC    + +  ++L  
Sbjct: 341 VTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDV 400

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
           M + G+ PN  TY+ ++    +   ++  L LL   +  GV P    +   I    +  +
Sbjct: 401 MTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGD 460

Query: 417 KARTLN 422
            A+ ++
Sbjct: 461 PAKAID 466



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 10/218 (4%)

Query: 72   KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            +S++A+K           P    +N+L++    S + + A ++ + + + G++ D K YT
Sbjct: 916  RSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYT 975

Query: 132  TLITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
             L+     +G++D     FE +K     PD V +N +I   G+S  +D A  + +EM   
Sbjct: 976  ILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNR 1035

Query: 184  VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
               + PD  T  AL+     AG+VD A ++Y+ +    ++ +   Y   I   S +G+ +
Sbjct: 1036 --GISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKD 1093

Query: 244  FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
             A SV+  M   G  P+    + L +    AG V   F
Sbjct: 1094 QAFSVFKKMMVVGCSPNTETFAQLPNKYPRAGLVHNPF 1131


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 175/389 (44%), Gaps = 19/389 (4%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-- 75
           A  VS  L ++N+L+    ++G + EC  LL+ + ++G+L     Y+     +C+  +  
Sbjct: 209 ASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELD 268

Query: 76  -AIKEAFRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            A++   R     P P + T+N L+  +C +SK  E    + +LV E GL+ D   Y TL
Sbjct: 269 AAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNE-GLEPDSFTYNTL 327

Query: 134 ITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I    K G V        +A+F    PD   + +LI      G  +RA  +  E  A   
Sbjct: 328 IAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNE--ALGK 385

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + P+ I    L+K  +N G +  A ++   + +  +    + + I +N   + G    A
Sbjct: 386 GIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +   M  KG  PD    + LI       K+E A EIL    + G+   + +Y+SL+  
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNG 505

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
                 ++  +E Y+ M      P + T N L+ +LC   +L K + +L +MK+  + P+
Sbjct: 506 LCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPD 565

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKE 394
            +T+  L+    +  D++    L  + +E
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/376 (22%), Positives = 161/376 (42%), Gaps = 32/376 (8%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           + ++I   G  G  +   +VL +M   V     + + +GA MK     G+V  A  V++ 
Sbjct: 43  YRSIIEKLGLYGKFEAMEEVLVDMRQNVGNHMLEGVYVGA-MKNYGRKGKVQEAVNVFER 101

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           +  Y+ + T   Y   ++    +G ++ A  VY  M  +G+ PD    +  +       +
Sbjct: 102 MDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSR 161

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
             AA  +L    +QG  + +++Y +++G         +  EL+  M +  +   +ST N 
Sbjct: 162 PHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNK 221

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           L+  LC    + +  ++L  +   G+ PN  TY+  +    +K +++  + ++ +  + G
Sbjct: 222 LLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQG 281

Query: 397 VIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAG 454
             P++V +  +I G+C + ++++A      ++  N G       + +L         +AG
Sbjct: 282 PKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLV--NEGLEPDSFTYNTL---------IAG 330

Query: 455 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRA 511
                       G +QL       ER++ N   +          SLIDG    GE + RA
Sbjct: 331 YCKG--------GMVQLA------ERILVNAVFNGFVPDEFTYRSLIDGLCHEGETN-RA 375

Query: 512 FSLLEEAASFGIVPCV 527
            +L  EA   GI P V
Sbjct: 376 LALFNEALGKGIKPNV 391



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/398 (19%), Positives = 162/398 (40%), Gaps = 37/398 (9%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERK-GLLDMDKVYHARFFNVCKSQK 75
           K   + H +S       +L   G+     ++L DM +  G   ++ VY     N  +  K
Sbjct: 32  KEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGNHMLEGVYVGAMKNYGRKGK 91

Query: 76  AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            ++EA   F+ +      PT+ ++N +MS+   S   + A +V   +++ G+  D   +T
Sbjct: 92  -VQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFT 150

Query: 132 TLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
             + +  ++ +  A        R++ N     C              EMN   +      
Sbjct: 151 IRMKSFCRTSRPHAAL------RLLNNMSSQGC--------------EMNVVAYCT---- 186

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
             +G   +        D   E++  +    +      +   ++   + GD +    + D 
Sbjct: 187 -VVGGFYEENFK----DEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDK 241

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK 310
           + K+GV+P+    +  I      G+++AA  ++    +QG    +++Y+ L+ G C N+K
Sbjct: 242 VIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSK 301

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            +Q+A      + +  L+P   T N LI   C G  +     +L +    G  P+  TY 
Sbjct: 302 -FQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYR 360

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            L+     + +    L L ++A   G+ PN++++  +I
Sbjct: 361 SLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI 398



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 74/360 (20%), Positives = 140/360 (38%), Gaps = 52/360 (14%)

Query: 100 SVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRV--- 155
           +V    KD   A ++   + +E G K     Y ++I      GK +AM E +   R    
Sbjct: 12  TVIRCQKDPMKALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVG 71

Query: 156 ------VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
                 V+   +   G+ G V  A +V   M  + +  +P   +  A+M    ++G  D+
Sbjct: 72  NHMLEGVYVGAMKNYGRKGKVQEAVNVFERM--DFYDCEPTVFSYNAIMSILVDSGYFDQ 129

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCS--QTGDWEFACSVYDDMTKKGV---------- 257
           A +VY  +    I  TP+VY+  I   S  +T     A  + ++M+ +G           
Sbjct: 130 AHKVYMRMRDRGI--TPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTV 187

Query: 258 --------IPDEVF-----------------LSALIDFAGHAGKVEAAFEILQEAKNQGI 292
                     DE +                  + L+      G V+   ++L +   +G+
Sbjct: 188 VGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGV 247

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
              + +Y+  +           A+ +   +     KP V T N LI  LC   +  +   
Sbjct: 248 LPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEV 307

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            L  + + GL P++ TY+ L+    +   V++   +L  A  +G +P+   ++ +I G+C
Sbjct: 308 YLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLC 367



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 105/268 (39%), Gaps = 47/268 (17%)

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN-IKGTPEVYTIAINCCSQTGDWEF 244
           P+ P H+T    +  C       +A E++  + K +  K T   Y   I      G +E 
Sbjct: 4   PLLPKHVTT---VIRCQKDPM--KALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEA 58

Query: 245 ACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
              V  DM +     + + V++ A+ ++ G  GKV+ A  + +          + SY+++
Sbjct: 59  MEEVLVDMRQNVGNHMLEGVYVGAMKNY-GRKGKVQEAVNVFERMDFYDCEPTVFSYNAI 117

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           M    ++  + +A ++Y  M+   + P V +    + + C   +    + +L++M S G 
Sbjct: 118 MSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGC 177

Query: 363 CPNTITY------------------------------------SILLVACERKDDVEVGL 386
             N + Y                                     +L V C +K DV+   
Sbjct: 178 EMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLC-KKGDVKECE 236

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMCSR 413
            LL +  + GV+PNL  +   I G+C +
Sbjct: 237 KLLDKVIKRGVLPNLFTYNFFIQGLCQK 264


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 110/459 (23%), Positives = 198/459 (43%), Gaps = 26/459 (5%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----K 75
           V+   ++Y  +IR    +GR+ E + LL+DM  +G       Y      VCKS       
Sbjct: 141 VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAM 200

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            + +  R     PN  + T+N++++        + A + L  +   G + D   YTT++ 
Sbjct: 201 EVLDEMRAKGCTPN--IVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLK 258

Query: 136 -TCA--KSGKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
             CA  +   V+ +F     +N  P+ V F+ L+    + G V+RA  VL +M+   H  
Sbjct: 259 GLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSG--HGC 316

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
             +      ++      G+VD A +    +  Y        YT  +    +   WE A  
Sbjct: 317 AANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKE 376

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +  +M +K   P+EV  +  I      G +E A  ++++    G  V I++Y++L+    
Sbjct: 377 LLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFC 436

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                  ALEL+    S+  KP   T   L+T LC+ ++L    E+L++M      PN +
Sbjct: 437 VQGRVDSALELF---YSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVV 493

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN-EHVL 426
           T+++L+    +K  ++  + L+ Q  E G  PNL+ +  ++   +        L   H L
Sbjct: 494 TFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGL 553

Query: 427 SFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 465
             N   P I   ++S+  ++ RE  V   I    +V  +
Sbjct: 554 VSNGVSPDIVT-YSSIIGVLSREDRVEEAIKMFHIVQDL 591



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 99/470 (21%), Positives = 196/470 (41%), Gaps = 69/470 (14%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAF-RFFKLVPN 89
           N + R+GR+ +  + L  +   G       Y      +C +++   ++E F    +    
Sbjct: 223 NGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCM 282

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   TF+ML+         E A QVL  +   G  A+  L   +I T  K G+VD  F+ 
Sbjct: 283 PNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQF 342

Query: 149 ------------------------------------------NVKPDRVVFNALITACGQ 166
                                                     N  P+ V FN  I    Q
Sbjct: 343 LNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQ 402

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
            G +++A  ++ +M+   H  + + +T  AL+      G+VD A E++     Y++   P
Sbjct: 403 KGLIEQATMLIEQMSE--HGCEVNIVTYNALVNGFCVQGRVDSALELF-----YSMPCKP 455

Query: 227 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
               YT  +         + A  +  +M +K   P+ V  + L+ F    G ++ A E++
Sbjct: 456 NTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELV 515

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
           ++    G +  +I+Y++L+   +N  N ++ALEL   + S  + P + T +++I  L   
Sbjct: 516 EQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSRE 575

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           D++ + +++   ++ LG+ P  + Y+ +L+A  ++ + +  +   +    +G +PN + +
Sbjct: 576 DRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTY 635

Query: 405 KCII-GMCSRRYEKAR-----------TLNEHVLSFNSGRPQIENKWTSL 442
             +I G+ +  + K              LN+++L     RP+  NK   L
Sbjct: 636 ITLIEGLANEDFLKETRDLLRELCSRGVLNKNLLE--EWRPKFSNKTVHL 683



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/305 (22%), Positives = 124/305 (40%), Gaps = 11/305 (3%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQS 167
           RL+    +  D   YT +I      G+V        D +    +P  V +  L+ A  +S
Sbjct: 134 RLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKS 193

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
               +A +VL EM A+     P+ +T   ++      G+VD ARE    +  Y  +    
Sbjct: 194 TGFGQAMEVLDEMRAK--GCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTV 251

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            YT  +        WE    ++ +M +K  +P+EV    L+ F    G VE A ++L++ 
Sbjct: 252 SYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQM 311

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
              G +      + ++           A +   +M S    P   +   ++  LC  ++ 
Sbjct: 312 SGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERW 371

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
               E+L +M      PN +T++  +    +K  +E   ML+ Q  E G   N+V +  +
Sbjct: 372 EDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNAL 431

Query: 408 I-GMC 411
           + G C
Sbjct: 432 VNGFC 436


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 180/374 (48%), Gaps = 23/374 (6%)

Query: 70  VCKSQKAIKEAFRFFKL-----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           +CK+ +  +    F K+     VPN    T+N+L++          A+ +L+ ++E+GL 
Sbjct: 17  LCKANRLPEATTYFAKMKKKGTVPNEW--TYNVLINGFCKVHKVHRAYLLLKEMKESGLA 74

Query: 125 ADCKLYTTLITTCAKSGKVDA-------MFEN-VKPDRVVFNALITACGQSGAVDRAFDV 176
            +   Y+T+I    +  KVD        M EN   P+ V +N L++   ++G +D A+++
Sbjct: 75  PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYEL 134

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAIN 234
           L EM      + PD  +   LM      G++D A +V++     N    P+V  Y+  I 
Sbjct: 135 LDEMRE--RGLQPDKFSYDTLMAGLCKTGKIDMALKVFE--DNSNGDCPPDVVAYSTLIA 190

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
              +TG  + AC +++ M +    PD V  +AL+D      +++ A ++L+  +++  + 
Sbjct: 191 GLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTP 250

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
            +I+YSSL+         + A E+++ M    ++P V T N+LI   C  + +   + ++
Sbjct: 251 NVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLM 310

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS- 412
            +M + G  P+ ITY+ L+    +         L    K     P+++ + C+I G C  
Sbjct: 311 EEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKL 370

Query: 413 RRYEKARTLNEHVL 426
            R + ARTL + +L
Sbjct: 371 ERIDMARTLFDDML 384



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 175/399 (43%), Gaps = 55/399 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN LI    +  ++     LL++M+  GL      Y       C+ Q  +  A++ F+ 
Sbjct: 44  TYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCR-QTKVDTAYKLFRQ 102

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +V N   P L T+N L+S    +   + A+++L  ++E GL+ D   Y TL+    K+GK
Sbjct: 103 MVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK 162

Query: 143 VD---AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +D    +FE     +  PD V ++ LI    ++G +D A  +  +M    +  +PD +T 
Sbjct: 163 IDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRE--NSCEPDVVTF 220

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            ALM       ++  A++V + +   N   TP V T                        
Sbjct: 221 TALMDGLCKGDRLQEAQQVLETMEDRNC--TPNVIT------------------------ 254

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
                     S+LID     G+V  A E+ +    +GI   +++Y+SL+           
Sbjct: 255 ---------YSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDS 305

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           AL L E M +    P + T N LI  LC   + P+   +  DMK+    P+ ITYS L+ 
Sbjct: 306 ALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIG 365

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
              + + +++   L     +  V+P++V F  ++ G C+
Sbjct: 366 GFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCN 404



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 190/427 (44%), Gaps = 28/427 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFF-KLVPN--- 89
           L + G+I   + + ED    G    D V Y      +CK+ + + EA + F K+  N   
Sbjct: 157 LCKTGKIDMALKVFED-NSNGDCPPDVVAYSTLIAGLCKTGR-LDEACKLFEKMRENSCE 214

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DA--- 145
           P + TF  LM         + A QVL  +++     +   Y++LI    K+G+V DA   
Sbjct: 215 PDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEV 274

Query: 146 ----MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               +   ++P+ V +N+LI     +  VD A  ++ EM A      PD IT   L+   
Sbjct: 275 FKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTA--TGCLPDIITYNTLIDGL 332

Query: 202 ANAGQVDRAREVY-KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              G+   A  ++  M  K+     P+V  Y+  I    +    + A +++DDM K+ V+
Sbjct: 333 CKTGRAPEANRLFGDMKAKF---CNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVL 389

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD V  S L++   +AG V+ A  +L+E      S  + +Y+SL+          +A  +
Sbjct: 390 PDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRV 449

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CE 377
            + M     +P V T  ALI A C   +     ++L +M   G+ PN ITY  L+   C 
Sbjct: 450 LKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCG 509

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQI 435
             D  E   ML    +++    ++  ++ ++ G+C + R   A  L E +    SG P  
Sbjct: 510 TGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQ--SGTPPR 567

Query: 436 ENKWTSL 442
            + + +L
Sbjct: 568 HDIYVAL 574



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 157/373 (42%), Gaps = 55/373 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L +  R+ E   +LE ME +        Y +    +CK+ + +++A   FK +      P
Sbjct: 227 LCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQ-VRDAQEVFKRMIVRGIEP 285

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMF 147
            + T+N L+     +   + A  ++  +   G   D   Y TLI    K+G+    + +F
Sbjct: 286 NVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLF 345

Query: 148 ENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
            ++K     PD + ++ LI    +   +D A  +  +M  +   V PD +T   L++   
Sbjct: 346 GDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA--VLPDVVTFSTLVEGYC 403

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPD 260
           NAG VD A  + + +   +   +P+VYT    ++   + G    A  V   M K+G  P+
Sbjct: 404 NAGLVDDAERLLEEMVASDC--SPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPN 461

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA----- 315
            V  +ALID    AGK   A+++L+E    G+   +I+Y SL+G      + ++A     
Sbjct: 462 VVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLE 521

Query: 316 -------------------------------LELYEHMKSIKLKPTVSTMNALITALCDG 344
                                          LEL E +K     P      ALI  LC G
Sbjct: 522 RLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQG 581

Query: 345 DQLPKTMEVLSDM 357
            +L K MEVL +M
Sbjct: 582 KELGKAMEVLEEM 594



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 102/211 (48%), Gaps = 5/211 (2%)

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            +TI I+   +      A + +  M KKG +P+E   + LI+      KV  A+ +L+E 
Sbjct: 9   TWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEM 68

Query: 288 KNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
           K  G++  +++YS+++ G C   K    A +L+  M      P + T N L++ LC    
Sbjct: 69  KESGLAPNVVTYSTVIHGFCRQTK-VDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGL 127

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           + +  E+L +M+  GL P+  +Y  L+    +   +++ L +          P++V +  
Sbjct: 128 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 187

Query: 407 II-GMC-SRRYEKARTLNEHVLSFNSGRPQI 435
           +I G+C + R ++A  L E +   NS  P +
Sbjct: 188 LIAGLCKTGRLDEACKLFEKMRE-NSCEPDV 217



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 1/117 (0%)

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           +I+++ ++     A    +A   +  MK     P   T N LI   C   ++ +   +L 
Sbjct: 7   VITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLK 66

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           +MK  GL PN +TYS ++    R+  V+    L  Q  E+G +PNLV +  ++ G+C
Sbjct: 67  EMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 123



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
           ++ +  V T   +I  LC  ++LP+     + MK  G  PN  TY++L+    +   V  
Sbjct: 1   MECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHR 60

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
             +LL + KE G+ PN+V +  +I G C +
Sbjct: 61  AYLLLKEMKESGLAPNVVTYSTVIHGFCRQ 90


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 180/401 (44%), Gaps = 25/401 (6%)

Query: 43  ECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLST 94
           + I L ++M R     GL+D      +RFF+     K       F K +        + T
Sbjct: 71  DAIALFQEMIRSRPLPGLVD-----FSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYT 125

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAMF 147
            N++++       +  A+ VL  V + G + D   + TLI      GKV       D M 
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMV 185

Query: 148 EN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
           EN  +PD V +N+++    +SG    AFD+L +M  E   V  D  T   ++ +    G 
Sbjct: 186 ENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKM--EERNVKADVFTYSTIIDSLCRDGC 243

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           +D A  ++K +    IK +   Y   +    + G W     +  DM  + ++P+ +  + 
Sbjct: 244 IDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV 303

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           L+D     GK++ A E+ +E   +GIS  II+Y++LM          +A  + + M   K
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
             P + T  +LI   C   ++   M+V  ++   GL  N +TYSIL+    +   +++  
Sbjct: 364 CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAE 423

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
            L  +    GV+P+++ +  ++ G+C   + EKA  + E +
Sbjct: 424 ELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 464



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 169/395 (42%), Gaps = 34/395 (8%)

Query: 20  NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           N   DV       + L R G I   I L ++ME KG+      Y++    +CK+ K    
Sbjct: 223 NVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDG 282

Query: 80  AFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           A     +V     P + TFN+L+ V                V+E  L+   +LY  +IT 
Sbjct: 283 ALLLKDMVSREIVPNVITFNVLLDV---------------FVKEGKLQEANELYKEMIT- 326

Query: 137 CAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                        + P+ + +N L+        +  A ++L  M    +   PD +T  +
Sbjct: 327 -----------RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVR--NKCSPDIVTFTS 373

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+K      +VD   +V++ I K  +      Y+I +    Q+G  + A  ++ +M   G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKA 315
           V+PD +    L+D     GK+E A EI ++ +   + +GI+ Y++++ G C   K  + A
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK-VEDA 492

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             L+  +    +KP V T   +I+ LC    L +   +L  M+  G  PN  TY+ L+ A
Sbjct: 493 WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
             R  D+     L+ + K  G   +    K +I M
Sbjct: 553 HLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDM 587



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/432 (21%), Positives = 187/432 (43%), Gaps = 79/432 (18%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           Y  D +      N L  +G++S+ + L++ M   G               C+        
Sbjct: 154 YEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENG---------------CQ-------- 190

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                    P + T+N +++    S D+  AF +LR ++E  +KAD   Y+T+I +  + 
Sbjct: 191 ---------PDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRD 241

Query: 141 GKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G +DA          + +K   V +N+L+    ++G  +    +L +M +    + P+ I
Sbjct: 242 GCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS--REIVPNVI 299

Query: 193 TIGALMKACANAGQVDRAREVYK-MIHK--------YNI--------------------- 222
           T   L+      G++  A E+YK MI +        YN                      
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 223 ---KGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 277
              K +P++  +T  I         +    V+ +++K+G++ + V  S L+     +GK+
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419

Query: 278 EAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           + A E+ QE  + G+   +++Y  L+ G C N K  +KALE++E ++  K+   +     
Sbjct: 420 KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGK-LEKALEIFEDLQKSKMDLGIVMYTT 478

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           +I  +C G ++     +   +   G+ PN +TY++++    +K  +    +LL + +EDG
Sbjct: 479 IIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 538

Query: 397 VIPNLVMFKCII 408
             PN   +  +I
Sbjct: 539 NAPNDCTYNTLI 550



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 6/164 (3%)

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +  +T   V   E   S ++D      K + A  + QE        G++ +S    A + 
Sbjct: 46  FSSITNGNVCFRERLRSGIVDI-----KKDDAIALFQEMIRSRPLPGLVDFSRFFSAIAR 100

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            K +   L+  + ++   +   + T+N +I   C   +      VL  +  LG  P+T T
Sbjct: 101 TKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTT 160

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           ++ L+     +  V   ++L+ +  E+G  P++V +  I+ G+C
Sbjct: 161 FNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGIC 204


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 160/341 (46%), Gaps = 10/341 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P+  ++  +++     KD   A ++L  +  +GLK +  +Y+ LI   A  G++      
Sbjct: 436 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRL 495

Query: 144 -DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M    V PD   +NA+I+   ++G ++ A   L E+      + PD +T GA +   
Sbjct: 496 LDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQG--RGLKPDAVTFGAFILGY 553

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           +  G++  A + +  +  + +     +YT+ IN   + G+   A S++  +   GV+PD 
Sbjct: 554 SKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDV 613

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              SA I      G+V+ A ++  E K +G+   + +YSSL+         +KA EL++ 
Sbjct: 614 QTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDE 673

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    + P +   NAL+  LC    + +  ++   M   GL P+++TYS ++    + ++
Sbjct: 674 MCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSEN 733

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
           V     L  +    GV P+  ++  ++  C +  +  + +N
Sbjct: 734 VAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 774



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 193/407 (47%), Gaps = 22/407 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----KAIKEAFRFFKLVPNPT 91
           R+  +   ++LL++ME++ L+     Y A    +C  +       + E   F  L PN  
Sbjct: 415 REHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPN-- 472

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----MF 147
           +  +++L+   AS    E A ++L  +  +G+  D   Y  +I+  +K+GK++     + 
Sbjct: 473 VVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLL 532

Query: 148 E----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           E     +KPD V F A I    ++G +  A     EM    H + P++     L+     
Sbjct: 533 EIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLD--HGLMPNNPLYTVLINGHFK 590

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           AG +  A  +++ +H   +   P+V T +  I+   + G  + A  V+ ++ +KG++PD 
Sbjct: 591 AGNLMEALSIFRRLHALGV--LPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDV 648

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              S+LI      G+VE AFE+  E   +GI+  I  Y++L+     + + Q+A +L++ 
Sbjct: 649 FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDG 708

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    L+P   T + +I   C  + + +   +  +M S G+ P++  Y+ L+  C ++ D
Sbjct: 709 MPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGD 768

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMC-SRRYEKARTLNEHVLS 427
           +E  + L  +  + G    L     I G C S + ++A  L + +++
Sbjct: 769 MEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIA 815



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 185/440 (42%), Gaps = 57/440 (12%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARF---FNVCKSQKAIKEAFRFFKLVPNPTLS 93
           + G+++E     ++M   GL+  + +Y       F      +A+    R   L   P + 
Sbjct: 555 KTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQ 614

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           T +  +     +   + A +V   ++E GL  D   Y++LI+   K G+V+  FE     
Sbjct: 615 TCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM 674

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACA 202
               + P+  ++NAL+    +SG + RA   FD + E   E     PD +T   ++    
Sbjct: 675 CLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLE-----PDSVTYSTMIDGYC 729

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG------ 256
            +  V  A  ++  +    ++    VY   ++ C + GD E A +++ +M +KG      
Sbjct: 730 KSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLS 789

Query: 257 ----------------------------VIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
                                       ++PD V  + +ID+   AGK+E A  + +E +
Sbjct: 790 FNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQ 849

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            + + V  ++Y+SLM   +      +   L+E M +  +KP   T   +I A C  D L 
Sbjct: 850 ERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLV 909

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +  ++  ++   G+      + +L+ A  +++D+     LL +  E G+ P+L     ++
Sbjct: 910 EAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLV 969

Query: 409 GMCSRRYEKARTLNEHVLSF 428
               R + +A  ++E    F
Sbjct: 970 ----RSFHEAGKMDEATRVF 985



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/378 (22%), Positives = 164/378 (43%), Gaps = 45/378 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L++ GR+ E + +  +++ KGL+     Y +     CK Q  +++AF     +      P
Sbjct: 623 LLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCK-QGEVEKAFELHDEMCLKGIAP 681

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
            +  +N L+     S D + A ++   + E GL+ D   Y+T+I    KS  V   F   
Sbjct: 682 NIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLF 741

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE------------------- 183
                + V+P   V+NAL+  C + G +++A ++  EM  +                   
Sbjct: 742 HEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSC 801

Query: 184 -------------VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
                           + PDH+T   ++     AG+++ A  ++K + + N+      YT
Sbjct: 802 KIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYT 861

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             +   ++ G      ++++ M  KGV PDEV    +I        +  AF++  E   +
Sbjct: 862 SLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGK 921

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G+      +  L+ A    ++  +A +L + M  + LKP+++  N L+ +  +  ++ + 
Sbjct: 922 GMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGKMDEA 981

Query: 351 MEVLSDMKSLGLCPNTIT 368
             V   +KSLGL P+T T
Sbjct: 982 TRVFEGVKSLGLVPDTTT 999



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 108/505 (21%), Positives = 205/505 (40%), Gaps = 48/505 (9%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           G I E ++L   M  KGL+     Y      +C++++  +    F ++      P  +  
Sbjct: 277 GDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNAC 336

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           + L+       D +   ++  ++   G+  +   Y  LI    K GK++   E       
Sbjct: 337 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVT 396

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
              KP+   F  LI    +   + RA ++L EM  E   + P  ++ GA++    +   +
Sbjct: 397 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEM--EKRNLVPSAVSYGAMINGLCHCKDL 454

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             A ++ + +    +K    VY+I I   +  G  E A  + D M+  GV PD    +A+
Sbjct: 455 SLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAI 514

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I     AGK+E A   L E + +G+    +++ + +   S      +A + ++ M    L
Sbjct: 515 ISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGL 574

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P       LI        L + + +   + +LG+ P+  T S  +    +   V+  L 
Sbjct: 575 MPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALK 634

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALM 445
           + S+ KE G++P++  +  +I G C +   EKA  L++                      
Sbjct: 635 VFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHD---------------------- 672

Query: 446 VYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLID 502
              E  + G  P + + + ++  L    +     +L + +   G+  D++  S   ++ID
Sbjct: 673 ---EMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYS---TMID 726

Query: 503 GF--GEYDPRAFSLLEEAASFGIVP 525
           G+   E    AFSL  E  S G+ P
Sbjct: 727 GYCKSENVAEAFSLFHEMPSKGVQP 751



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 138/319 (43%), Gaps = 12/319 (3%)

Query: 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGK--------VDAMFENVKPDRVVFNALITA 163
           ++V   + +A +  D   YT L+    K+G         ++   + + P+  +++ +I  
Sbjct: 213 WKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEG 272

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
             Q G +D A ++   M  +   + P+  T   +      A +++ A+  ++ + K  +K
Sbjct: 273 MCQVGDIDEAVELKRSMGEK--GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLK 330

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                 +  I+   + GD +    + D M   G+  + +  + LI      GK+E A EI
Sbjct: 331 PDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEI 390

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           L+     G      ++  L+       N  +ALEL + M+   L P+  +  A+I  LC 
Sbjct: 391 LKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCH 450

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
              L    ++L  M   GL PN + YSIL++A   +  +E    LL      GV P++  
Sbjct: 451 CKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFC 510

Query: 404 FKCIIGMCSR--RYEKART 420
           +  II   S+  + E+A T
Sbjct: 511 YNAIISCLSKAGKMEEAST 529



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 111/513 (21%), Positives = 201/513 (39%), Gaps = 58/513 (11%)

Query: 44  CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           C  LL+D+ + G++++       F+ V       K  F  +         T+  L+    
Sbjct: 196 CNSLLKDLLKCGMMEL-------FWKVYNGMLDAKMGFDVY---------TYTYLVGALC 239

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRV 155
            + D  GA +VL  + E GL  +  +Y+ +I    + G +D   E         + P+  
Sbjct: 240 KTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTY 299

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
            +  +     ++  ++ A     EM      + PD+    AL+      G +D    +  
Sbjct: 300 TYTIITAGLCRAKRMNEAKLTFEEMQKT--GLKPDYNACSALIDGFMREGDIDEVLRIKD 357

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
           ++    I      Y + I+   + G  E A  +   M   G  P+      LI+      
Sbjct: 358 VMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREH 417

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
            +  A E+L E + + +    +SY +++    + K+   A +L E M    LKP V   +
Sbjct: 418 NMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYS 477

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI A     ++ +   +L  M   G+ P+   Y+ ++    +   +E     L + +  
Sbjct: 478 ILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGR 537

Query: 396 GVIPNLVMFKCII---GMCSRRYEKARTLNE---HVLSFN--------SGRPQIENKWTS 441
           G+ P+ V F   I       +  E A+  +E   H L  N        +G  +  N   +
Sbjct: 538 GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEA 597

Query: 442 LALMVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADIRERL-----VENLGVSADALKRS 495
           L+  ++R     G +P V+  S  + G L+   N  ++E L     ++  G+  D    S
Sbjct: 598 LS--IFRRLHALGVLPDVQTCSAFIHGLLK---NGRVQEALKVFSELKEKGLVPDVFTYS 652

Query: 496 NLCSLIDGF---GEYDPRAFSLLEEAASFGIVP 525
              SLI GF   GE + +AF L +E    GI P
Sbjct: 653 ---SLISGFCKQGEVE-KAFELHDEMCLKGIAP 681



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 123/293 (41%), Gaps = 38/293 (12%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           VVF+ LI +  + G +D A +V     A+   +    I   +L+K     G ++   +VY
Sbjct: 159 VVFDILIDSYKRMGMLDEAANVF--FVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVY 216

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             +    +      YT  +    +TGD   A  V  +M +KG+ P+E   S +I+     
Sbjct: 217 NGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQV 276

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-- 332
           G ++ A E+ +    +G+     +Y+ +      AK   +A   +E M+   LKP  +  
Sbjct: 277 GDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNAC 336

Query: 333 ---------------------------------TMNALITALCDGDQLPKTMEVLSDMKS 359
                                            T N LI  LC   ++ K  E+L  M +
Sbjct: 337 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVT 396

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           LG  PN+ T+ +L+    R+ ++   L LL + ++  ++P+ V +  +I G+C
Sbjct: 397 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLC 449



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 137/350 (39%), Gaps = 57/350 (16%)

Query: 25   VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
            ++  +  YN L+    + G I     L + M  KGL      Y       CKS+  + EA
Sbjct: 679  IAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSEN-VAEA 737

Query: 81   FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA----------- 125
            F  F  +P+    P    +N L+  C    D E A  + R + + G              
Sbjct: 738  FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGY 797

Query: 126  --DCKL---------------------YTTLITTCAKSGKVDA---MFE-----NVKPDR 154
               CK+                     YTT+I    K+GK++    +F+     N+  D 
Sbjct: 798  CKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDT 857

Query: 155  VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREV 213
            V + +L+    + G     F +  +M A+   V PD +T G ++ A C     V+  +  
Sbjct: 858  VTYTSLMYGYNKLGQSSEVFALFEKMVAK--GVKPDEVTYGLVIYAHCKEDNLVEAFKLR 915

Query: 214  YKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
             +++ K  + KGT  ++ + I    +  D   A  + D+M + G+ P     + L+    
Sbjct: 916  DEVVGKGMLTKGT--IHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFH 973

Query: 273  HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             AGK++ A  + +  K+ G+     +   L+    N  + + A  L + +
Sbjct: 974  EAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQL 1023



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 33/176 (18%), Positives = 75/176 (42%)

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
           +P V+ I I+   + G  + A +V+       ++   +  ++L+      G +E  +++ 
Sbjct: 157 SPVVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVY 216

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
               +  +   + +Y+ L+GA     + + A  +   M    L P     + +I  +C  
Sbjct: 217 NGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQV 276

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
             + + +E+   M   GL PNT TY+I+     R   +    +   + ++ G+ P+
Sbjct: 277 GDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPD 332


>gi|449438586|ref|XP_004137069.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 149/332 (44%), Gaps = 20/332 (6%)

Query: 100 SVCASSKDS-----------EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           SVC   +D+           E +    +L+   G       +   +   AKSG +D  + 
Sbjct: 35  SVCGRPRDAVINASFQSQLLEQSLDSFKLMVLKGHSPSSFSFNNALDLLAKSGNLDRTWG 94

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                    + D   F   I A  ++G V + F++LA+M  E   V P+      L++AC
Sbjct: 95  FFTEYLGRTQFDVYSFGITIKAFCENGNVSKGFELLAQM--ETMGVSPNVFIYTILIEAC 152

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G +D+A+ ++  +    +     +YTI IN   + G  +    +Y  M   GV+P+ 
Sbjct: 153 CRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQKMKLVGVLPNL 212

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++LI      GK+  AF++  E   +G++   ++Y+ L+G         KA  L E 
Sbjct: 213 YTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLER 272

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK   + PT  T N L+  LC+  QL K +  L  +K +GLCP  +TY+IL+    +  +
Sbjct: 273 MKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGN 332

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             V   L+ + ++ G+ P+ V +  ++    R
Sbjct: 333 SSVVSELVREMEDRGISPSKVTYTILMNTFVR 364



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 146/324 (45%), Gaps = 10/324 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P +  + +L+  C  + D + A  +   + + GL A+  +YT +I    K G     FE
Sbjct: 139 SPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFE 198

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    V P+   +N+LIT   + G +  AF V  E++     V  + +T   L+  
Sbjct: 199 LYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISK--RGVACNAVTYNILIGG 256

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               GQV +A  + + + + +I  T   + + ++    TG  + A S  + +   G+ P 
Sbjct: 257 LCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPT 316

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + LI      G      E+++E +++GIS   ++Y+ LM     + + +KA E++ 
Sbjct: 317 LVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFH 376

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            MK I L P   T   LI  LC    + +  ++   M  + L PN + Y+ ++    ++ 
Sbjct: 377 LMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKEC 436

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMF 404
           +    L  L +  ++GV PN+  +
Sbjct: 437 NSYKALKFLEEMVKNGVTPNVASY 460



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 112/275 (40%), Gaps = 48/275 (17%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+G++S+   LLE M+R  +                              
Sbjct: 249 TYNILIGGLCRKGQVSKAEGLLERMKRAHI------------------------------ 278

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             NPT  TFNMLM    ++   + A   L  ++  GL      Y  LI+  +K G    +
Sbjct: 279 --NPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVV 336

Query: 147 FENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            E V+        P +V +  L+    +S  +++A+++   M  +   + PD  T G L+
Sbjct: 337 SELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLM--KRIGLVPDQHTYGVLI 394

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN-CCSQTGDWEFACSVYDDMTKKGV 257
                 G +  A ++YK + + +++    +Y   IN  C +   ++ A    ++M K GV
Sbjct: 395 HGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYK-ALKFLEEMVKNGV 453

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
            P+     + I      GK   A  +L+E    G+
Sbjct: 454 TPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGL 488


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 176/386 (45%), Gaps = 43/386 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L ++GR+ +  DLL DM+ +GLL     Y+   +  CK    +KEA    +L+      P
Sbjct: 253 LCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCK-MGWLKEAANVIELMTQNNLLP 311

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
            + T+NML++   +    E AF+ LR                           D M EN+
Sbjct: 312 DVWTYNMLINGLCNEGRIEEAFK-LR---------------------------DEM-ENL 342

Query: 151 K--PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           K  PD V +N LI  C +   +  AF +L EM+ +   V P+ +T   ++K     G++D
Sbjct: 343 KLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEK--GVKPNAVTHNIMVKWYCKEGKMD 400

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A      + +         Y   IN   + G+   A    D+M +K +  D V L+ ++
Sbjct: 401 DASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTIL 460

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                  K+E A+++L  A+ +G  +  +SY +L+       N  +AL+L++ MK  ++ 
Sbjct: 461 RTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEII 520

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P+  T N +I  LC   +  + +  L+++   GL P+  TY+ +L    R+ DVE     
Sbjct: 521 PSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQF 580

Query: 389 LSQAKEDGVIPNLVMFKCII---GMC 411
            ++  E+   P++  F C I   G+C
Sbjct: 581 HNKMVENSFKPDV--FTCNILLRGLC 604



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 166/389 (42%), Gaps = 19/389 (4%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI     +GRI E   L ++ME   LL  D V +    N C     I EAF+  + 
Sbjct: 315 TYNMLINGLCNEGRIEEAFKLRDEMENLKLLP-DVVSYNTLINGCLEWSKISEAFKLLEE 373

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T N+++         + A   +  ++E+G   DC  Y TLI    K+G 
Sbjct: 374 MSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGN 433

Query: 143 VDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +   F        +N+K D V  N ++    +   ++ A+ +L+      + +D   ++ 
Sbjct: 434 MGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFID--EVSY 491

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           G L+      G VDRA +++  + +  I  +   Y   I    Q G  E A S  +++ +
Sbjct: 492 GTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLE 551

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G++PDE   + ++      G VE AF+   +         + + + L+         +K
Sbjct: 552 SGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEK 611

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           AL+L+    S        T N LIT+LC   +L     +LS+M+   L P+  TY+ ++ 
Sbjct: 612 ALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIIT 671

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
           A      +      +S+  E G +P  V+
Sbjct: 672 ALTDSGRIREAEEFMSKMLEKGXLPXQVL 700



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 171/368 (46%), Gaps = 20/368 (5%)

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           +V  S++A  +A +   +VPN  ++TFN+++         + A + L ++ +     D  
Sbjct: 188 SVSFSREAFNDAIKL-GIVPN--VNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNV 244

Query: 129 LYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
            Y T++    K G++        D     + P+R  +N L+    + G +  A +V+  M
Sbjct: 245 TYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELM 304

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQ 238
               + + PD  T   L+    N G+++ A ++   +   N+K  P+V  Y   IN C +
Sbjct: 305 TQ--NNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEME--NLKLLPDVVSYNTLINGCLE 360

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
                 A  + ++M++KGV P+ V  + ++ +    GK++ A   + + +  G S   ++
Sbjct: 361 WSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVT 420

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y++L+     A N  +A    + M    +K    T+N ++  LC   +L +  ++LS  +
Sbjct: 421 YNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSAR 480

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRY 415
             G   + ++Y  L+V   +  +V+  L L  + KE  +IP+ V + CIIG    C +  
Sbjct: 481 KRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTE 540

Query: 416 EKARTLNE 423
           +    LNE
Sbjct: 541 QAISKLNE 548



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 120/289 (41%), Gaps = 31/289 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAFRF 83
           SY  LI    + G +   + L ++M+ K ++     Y+     +C   K+++AI +    
Sbjct: 490 SYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNEL 549

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P  +T+N ++       D E AFQ    + E   K D      L+      G +
Sbjct: 550 LESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGML 609

Query: 144 DAMFENVKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +   +            D V +N LIT+  + G +D AF++L+EM  E   + PDH T  
Sbjct: 610 EKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEM--EEKELGPDHYTYN 667

Query: 196 ALMKACANAGQVDRARE-VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           A++ A  ++G++  A E + KM+ K  +               Q    +   +V    T 
Sbjct: 668 AIITALTDSGRIREAEEFMSKMLEKGXLP-------------XQVLQLDXNETVVTSETS 714

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
           +      V  S  I      GK + A  I  E+K +GI+V   +Y +LM
Sbjct: 715 EESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLM 763


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 174/379 (45%), Gaps = 44/379 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           PTL TF ++M    +  + + A  VLR + + G   +  +Y TLI + +K  +V+   + 
Sbjct: 209 PTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQL 268

Query: 150 VK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           ++        PD   FN +I    +   ++ A  ++  M   +    PD IT G LM   
Sbjct: 269 LEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRM--LIRGFTPDDITYGYLMNGL 326

Query: 202 ANAGQVDRAREVY------------KMIHKYNIKGTPE-----------VYTIAINCCSQ 238
              G+VD A++++             +IH +   G  +            Y I  + C+ 
Sbjct: 327 CKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTY 386

Query: 239 T----GDWE-----FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
                G W+      A  V  DM  KG  P+    + L+D     GK++ A+ +L E   
Sbjct: 387 NSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSA 446

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            G+    + ++ L+ A        +A+E++  M     KP V T N+LI+ LC+ D++  
Sbjct: 447 DGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKH 506

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
            + +L DM S G+  NT+TY+ L+ A  R+ +++    L+++    G + + + +  +I 
Sbjct: 507 ALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIK 566

Query: 409 GMC-SRRYEKARTLNEHVL 426
           G+C +   +KAR+L E +L
Sbjct: 567 GLCRAGEVDKARSLFEKML 585



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 176/412 (42%), Gaps = 51/412 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L +  RI+E   ++  M  +G    D  Y      +CK  + +  A   F  +P PT   
Sbjct: 291 LCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGR-VDAAKDLFYRIPKPTSVI 349

Query: 95  FNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           FN L+    +    + A  VL  +V   G+  D   Y +LI    K G V    E     
Sbjct: 350 FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDM 409

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                KP+   +  L+    + G +D A+++L EM+A+   + P+ +    L+ A     
Sbjct: 410 RNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSAD--GLKPNTVGFNCLISAFCKEH 467

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           ++  A E+++ + +   K  P+VYT    I+   +  + + A  +  DM  +GV+ + V 
Sbjct: 468 RIPEAVEIFREMPRKGCK--PDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVT 525

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM- 322
            + LI+     G+++ A +++ E   QG  +  I+Y+SL+     A    KA  L+E M 
Sbjct: 526 YNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKML 585

Query: 323 -------------------------------KSIKLK---PTVSTMNALITALCDGDQLP 348
                                          K + L+   P + T N+LI  LC   ++ 
Sbjct: 586 RDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIE 645

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
             + +   +++ G+ P+T+TY+ L+    +   V    +LL +  EDG +PN
Sbjct: 646 DGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 697



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 153/368 (41%), Gaps = 54/368 (14%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           ++ +   + +YN LI    ++G +   +++L DM  KG       Y       CK  K I
Sbjct: 376 SYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGK-I 434

Query: 78  KEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            EA+     +      P    FN L+S          A ++ R +   G K D   + +L
Sbjct: 435 DEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 494

Query: 134 ITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I+   +  ++        D + E V  + V +N LI A  + G +  A  ++ EM  +  
Sbjct: 495 ISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 554

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            +D   IT  +L+K    AG+VD+AR                                  
Sbjct: 555 LLD--EITYNSLIKGLCRAGEVDKAR---------------------------------- 578

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
            S+++ M + G++P  +  + LI+    +G VE A E  +E   +G +  I++++SL+  
Sbjct: 579 -SLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLING 637

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
              A   +  L ++  +++  + P   T N L++ LC G  +     +L +    G  PN
Sbjct: 638 LCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 697

Query: 366 TITYSILL 373
             T+SILL
Sbjct: 698 DRTWSILL 705



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 97/207 (46%), Gaps = 10/207 (4%)

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-VFLSALIDF--AGHAGKVEAAFEI 283
           +VY + I      G+++    +   M  +G++  E +F+S + D+  AG  G+      +
Sbjct: 106 DVYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTT---RL 162

Query: 284 LQEAKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           + E +N         SY+ ++    +    + A  ++  M S K+ PT+ T   ++ ALC
Sbjct: 163 MLEMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALC 222

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
             +++   + VL DM   G  PN++ Y  L+ +  + + V   L LL +    G +P+  
Sbjct: 223 AVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAE 282

Query: 403 MFK-CIIGMC--SRRYEKARTLNEHVL 426
            F   I+G+C   R  E A+ +N  ++
Sbjct: 283 TFNDVILGLCKFDRINEAAKMVNRMLI 309



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVY 214
           V+  LI   G +G       +L +M  E   V  + + I ++M+    AG   +  R + 
Sbjct: 107 VYQVLIGKLGSNGEFKTIDRLLMQMKDE-GIVFKESLFI-SIMRDYDKAGFPGQTTRLML 164

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           +M + Y+ + T + Y + +         + A +V+ DM  + + P       ++      
Sbjct: 165 EMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAV 224

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
            +V++A  +L++    G     + Y +L+ + S      +AL+L E M  +   P   T 
Sbjct: 225 NEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETF 284

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           N +I  LC  D++ +  ++++ M   G  P+ ITY  L+
Sbjct: 285 NDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLM 323


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 176/386 (45%), Gaps = 43/386 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L ++GR+ +  DLL DM+ +GLL     Y+   +  CK    +KEA    +L+      P
Sbjct: 253 LCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCK-MGWLKEAANVIELMTQNNLLP 311

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
            + T+NML++   +    E AF+ LR                           D M EN+
Sbjct: 312 DVWTYNMLINGLCNEGRIEEAFK-LR---------------------------DEM-ENL 342

Query: 151 K--PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           K  PD V +N LI  C +   +  AF +L EM+ +   V P+ +T   ++K     G++D
Sbjct: 343 KLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEK--GVKPNAVTHNIMVKWYCKEGKMD 400

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A      + +         Y   IN   + G+   A    D+M +K +  D V L+ ++
Sbjct: 401 DASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTIL 460

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                  K+E A+++L  A+ +G  +  +SY +L+       N  +AL+L++ MK  ++ 
Sbjct: 461 RTLCREKKLEEAYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEII 520

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P+  T N +I  LC   +  + +  L+++   GL P+  TY+ +L    R+ DVE     
Sbjct: 521 PSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQF 580

Query: 389 LSQAKEDGVIPNLVMFKCII---GMC 411
            ++  E+   P++  F C I   G+C
Sbjct: 581 HNKMVENSFKPDV--FTCNILLRGLC 604



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 167/389 (42%), Gaps = 19/389 (4%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI     +GRI E   L ++ME   LL  D V +    N C     I EAF+  + 
Sbjct: 315 TYNMLINGLCNEGRIEEAFKLRDEMENLKLLP-DVVSYNTLINGCLEWSKISEAFKLLEE 373

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T N+++         + A   +  ++E+G   DC  Y TLI    K+G 
Sbjct: 374 MSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGN 433

Query: 143 VDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +   F        +N+K D V  N ++    +   ++ A+ +L+      + +D   ++ 
Sbjct: 434 MGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYFID--EVSY 491

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           G L+      G VDRA +++  + +  I  +   Y   I    Q G  E A S  +++ +
Sbjct: 492 GTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLE 551

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G++PDE   + ++      G VE AF+   +         + + + L+         +K
Sbjct: 552 SGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEK 611

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           AL+L+    S        T N LIT+LC   +L     +LS+M+   L P+  TY+ ++ 
Sbjct: 612 ALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIIT 671

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
           A      +      +S+  E G +P+ V+
Sbjct: 672 ALTDSGRIREAEEFMSKMLEKGNLPDQVL 700



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 172/368 (46%), Gaps = 20/368 (5%)

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           +V  S++A  +A +   +VPN  ++TFN+++         + A + L ++ +     D  
Sbjct: 188 SVSFSREAFNDAIKL-GIVPN--VNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNV 244

Query: 129 LYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
            Y T++ T  K G++        D     + P+R  +N L+    + G +  A +V+  M
Sbjct: 245 TYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELM 304

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQ 238
               + + PD  T   L+    N G+++ A ++   +   N+K  P+V  Y   IN C +
Sbjct: 305 TQ--NNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEME--NLKLLPDVVSYNTLINGCLE 360

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
                 A  + ++M++KGV P+ V  + ++ +    GK++ A   + + +  G S   ++
Sbjct: 361 WSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVT 420

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y++L+     A N  +A    + M    +K    T+N ++  LC   +L +  ++LS  +
Sbjct: 421 YNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSAR 480

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRY 415
             G   + ++Y  L+V   +  +V+  L L  + KE  +IP+ V + CIIG    C +  
Sbjct: 481 KRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTE 540

Query: 416 EKARTLNE 423
           +    LNE
Sbjct: 541 QAISKLNE 548



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 123/289 (42%), Gaps = 31/289 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAFRF 83
           SY  LI    + G +   + L ++M+ K ++     Y+     +C   K+++AI +    
Sbjct: 490 SYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNEL 549

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P  +T+N ++       D E AFQ    + E   K D      L+      G +
Sbjct: 550 LESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVL 609

Query: 144 DAMFENVKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +   +            D V +N LIT+  + G +D AF++L+EM  E   + PDH T  
Sbjct: 610 EKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEM--EEKELGPDHYTYN 667

Query: 196 ALMKACANAGQVDRARE-VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           A++ A  ++G++  A E + KM+ K N+   P+          Q    +   +V    T 
Sbjct: 668 AIITALTDSGRIREAEEFMSKMLEKGNL---PD----------QVLQLDKNETVVTSETS 714

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
           +      V  S  I      GK + A  I  E+K +GI+V   +Y +LM
Sbjct: 715 EESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLM 763


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 178/408 (43%), Gaps = 20/408 (4%)

Query: 14  PNGKHANYA-HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           PNG + + +  + +  +H   +L+R G + E +  LE M  +G +       +     C+
Sbjct: 96  PNGVNGSRSFEEFASNIH-LRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCR 154

Query: 73  SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           S K  ++A R  +++ N    P + T+N+L+     S + + A QVL   +   +  D  
Sbjct: 155 SGKT-RKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVL---ERMSVAPDVV 210

Query: 129 LYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
            Y T++ +   SGK+    E           PD + +  LI A      V +A  +L EM
Sbjct: 211 TYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEM 270

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
             +     PD +T   L+      G++D A +    +  Y  +     + I +     TG
Sbjct: 271 RKK--GCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTG 328

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
            W  A  +  DM +KG  P  V  + LI+F      +  A ++L++    G     +SY+
Sbjct: 329 RWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYN 388

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
            L+      K   +A+E  E M S    P + T N L+TALC   +    +E+L+ + S 
Sbjct: 389 PLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSK 448

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           G  P  ITY+ ++    +    E    LL + +  G+ P+++ +  ++
Sbjct: 449 GCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLL 496



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 151/340 (44%), Gaps = 40/340 (11%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFN 96
           + + + LL++M +KG       Y+     +CK  + + EA +F   +P     P + T N
Sbjct: 260 VGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGR-LDEAIKFLNNMPLYGCQPNVITHN 318

Query: 97  MLM-SVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPD 153
           +++ S+C++ +  D+E      RL+                         D + +   P 
Sbjct: 319 IILRSMCSTGRWMDAE------RLL------------------------ADMLRKGCSPS 348

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
            V FN LI    +   + RA DVL +M    H   P+ ++   L+       ++DRA E 
Sbjct: 349 VVTFNILINFLCRKRLLGRAIDVLEKMPK--HGCMPNSLSYNPLLHGFCQEKKMDRAIEY 406

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
            +++           Y   +    + G  + A  + + ++ KG  P  +  + +ID    
Sbjct: 407 LEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTK 466

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
            GK E A E+L+E + +G+   II+YS+L+          +A++++  M+ + +KP+  T
Sbjct: 467 VGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVT 526

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            NA++  LC   Q  + ++ L+ M   G  P   TY+IL+
Sbjct: 527 YNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILI 566



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/417 (23%), Positives = 174/417 (41%), Gaps = 49/417 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN 96
           R G+  +   ++E +E  G +     Y+      CKS +  K      ++   P + T+N
Sbjct: 154 RSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMSVAPDVVTYN 213

Query: 97  -MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-TTCAKSGKVDAMF------- 147
            +L S+C S K  E A +VL    +     D   YT LI  TC  SG   AM        
Sbjct: 214 TILRSLCDSGKLKE-AMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRK 272

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ- 206
           +  KPD V +N LI    + G +D A   L  M   ++   P+ IT   ++++  + G+ 
Sbjct: 273 KGCKPDVVTYNVLINGICKEGRLDEAIKFLNNM--PLYGCQPNVITHNIILRSMCSTGRW 330

Query: 207 ----------------------------------VDRAREVYKMIHKYNIKGTPEVYTIA 232
                                             + RA +V + + K+        Y   
Sbjct: 331 MDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPL 390

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           ++   Q    + A    + M  +G  PD V  + L+      GK +AA EIL +  ++G 
Sbjct: 391 LHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGC 450

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQLPKTM 351
           S  +I+Y++++   +     + A EL E M+   LKP + T + L+  L C+G ++ + +
Sbjct: 451 SPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEG-KVDEAI 509

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ++  DM+ L + P+ +TY+ +++   +       +  L+   E G  P    +  +I
Sbjct: 510 KIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILI 566


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 187/408 (45%), Gaps = 20/408 (4%)

Query: 23  HDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V+  +++YN L+R    +GR+ E + ++ DM   G       Y+      C++ + + 
Sbjct: 4   HGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE-LD 62

Query: 79  EAFRFFKLV-----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            A R   L+       P L TFN +++    +   EGA +V   +   GL  D   Y TL
Sbjct: 63  GAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTL 122

Query: 134 ITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           ++   K G +    A+F  +      PD V F +LI A  ++G +++A  ++A+M     
Sbjct: 123 LSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRE--R 180

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            +  + +T  AL+      G +D A    + + K  I+ +   Y   IN   + G  + A
Sbjct: 181 GLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLA 240

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +  +M  K V PD V  S +I      G +++AF++ Q+   +G+    I+YSSL+  
Sbjct: 241 RELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRG 300

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
               K    A EL+E+M  + ++P   T   LI   C    + K + +  +M   G+ P+
Sbjct: 301 LCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 360

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            +TYS+L+    +    +    LL +   +  +P+ + +  ++  CS+
Sbjct: 361 VVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSK 408



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 170/402 (42%), Gaps = 62/402 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + GR+     + ++M R+GL      Y+      CK    + E+   F  +     
Sbjct: 89  NGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKV-GCLHESLAVFSEMTQRGL 147

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
            P + TF  L+     + + E A  ++  ++E GL+ +   +T LI    K G +D    
Sbjct: 148 VPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALL 207

Query: 145 AMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHP------------- 186
           A+ E     ++P  V +NALI    + G +D A +++ EM A+ V P             
Sbjct: 208 AVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYC 267

Query: 187 -------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                              V PD IT  +L++      +++ A E+++ + +  ++    
Sbjct: 268 KVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEF 327

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            YT  I+   + G+ E A S++D+M +KGV+PD V  S LI+    + + + A  +L + 
Sbjct: 328 TYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL 387

Query: 288 KNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPTVS 332
            ++      I Y +LM  CS A+                 ++A ++Y+ M     K   S
Sbjct: 388 YHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGS 447

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
             + LI   C G  + K +     M   G  PN+ T +I LV
Sbjct: 448 VYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNS-TSTISLV 488



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 114/286 (39%), Gaps = 34/286 (11%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF----RF 83
           YN LI    + GR+    +L+ +ME K +      Y       CK    +  AF    + 
Sbjct: 224 YNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN-LDSAFQLNQKM 282

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K    P   T++ L+      K    A ++   + + G++ D   YTTLI    K G V
Sbjct: 283 LKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNV 342

Query: 144 DAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +           + V PD V ++ LI    +S     A  +L ++  E  PV PD+I   
Sbjct: 343 EKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHE-DPV-PDNIKYD 400

Query: 196 ALMKACANA---------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
           ALM  C+ A               G +  A +VY+ +   N K    VY+I I+   + G
Sbjct: 401 ALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGG 460

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           +   A S +  M + G  P+     +L+      G V  A   +Q+
Sbjct: 461 NVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQD 506


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 171/399 (42%), Gaps = 53/399 (13%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L R+ +++    L + +  +G   +D   +    +     +  KEA  FF+ +    P P
Sbjct: 92  LGRESQLTTVSRLFKSLREEGY-PLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQP 150

Query: 91  TLSTFNMLMSVCASSKDS-EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           +L T+N+++ +      S E   ++   ++  G++ D   Y T IT CA     +   E 
Sbjct: 151 SLVTYNVIIDLYGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATEL 210

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  N  PDRV +NAL+   G++G  + A +VL EM  E     P+ +T   L+ A 
Sbjct: 211 FTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAANVLKEM--ESAGCLPNIVTYNELLSAF 268

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AG  + A E+                                    D M  KG+ PD 
Sbjct: 269 GRAGLCNAAAEMK-----------------------------------DSMVSKGIEPDV 293

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++L+     AGKVE A EI  + +    +    ++++L+G     KN+ + + ++E 
Sbjct: 294 FTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFED 353

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M++  ++P + T N+L+ A        + ++V   MK  G  P+  T++IL+ A  R   
Sbjct: 354 MQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGS 413

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
            +  L +     + G  P+L  F  ++   +R  R+E A
Sbjct: 414 SDQALSIYDGMLQAGCTPDLATFNTLLAALAREGRWEHA 452



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/399 (21%), Positives = 169/399 (42%), Gaps = 22/399 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T+N L+S    +     A ++   +   G++ D   YT+L++  +++GKV+   E 
Sbjct: 256 PNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEI 315

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  N  P+   FNALI   G++        +  +M A    V+PD +T  +L+ A 
Sbjct: 316 YNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQA--CGVEPDIVTWNSLLGAF 373

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G      +V++ + K   +     + I I    + G  + A S+YD M + G  PD 
Sbjct: 374 GKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDL 433

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + L+      G+ E A  IL E          I+Y+S++ A +N    +K  E+ + 
Sbjct: 434 ATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDT 493

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           + +I +  T   +   +        + +  +    M+  G   +T T++ ++    +K  
Sbjct: 494 LHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMYGKKGM 553

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKAR-TLNE--------HVLSFNS 430
           ++      +  +  G+ P++V + C++GM  R   Y K   TL E         ++S+N+
Sbjct: 554 MDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNT 613

Query: 431 G-RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGC 468
                 ++   S A  ++ E +  G  P     +  +GC
Sbjct: 614 VIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGC 652



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 134/332 (40%), Gaps = 51/332 (15%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P + T+N L+     +       +V R +++AG + D   +  LI    + G  D   ++
Sbjct: 361 PDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSI 420

Query: 147 FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           ++ +      PD   FN L+ A  + G  + A  +L E+N   +   P+ I   +++ A 
Sbjct: 421 YDGMLQAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSY--KPNDIAYASMLHAY 478

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           AN G++++ +E+   +H   +  T    + + +  + CS   + E A   +  M   G +
Sbjct: 479 ANGGELEKLKEMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDA---FLAMRHHGYL 535

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK---- 314
            D    +A+I   G  G ++ A +     ++ G+   +++Y+ LMG       ++K    
Sbjct: 536 SDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEAT 595

Query: 315 -------------------------------ALELYEHMKSIKLKPTVSTMNALITALCD 343
                                          A  ++  M S  ++P   T N  +    +
Sbjct: 596 LRECMAAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVN 655

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           G   P+ + V+  M   G  P+ +TY  L+ A
Sbjct: 656 GGMFPEALSVVKHMHKTGCKPDEVTYRTLVDA 687



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 110/278 (39%), Gaps = 10/278 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P L+TFN L++  A     E A  +L  +  +  K +   Y +++   A  G+++ + E 
Sbjct: 431 PDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASMLHAYANGGELEKLKEM 490

Query: 150 VKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           V           +++    +    +   VD A D    M    H    D  T  A++   
Sbjct: 491 VDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRH--HGYLSDTSTFNAMISMY 548

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G +D+A + + ++    ++     Y   +    + G +    +   +    G  PD 
Sbjct: 549 GKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDL 608

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + +I      G++ +A  I  E  + GI     +Y++ +G   N   + +AL + +H
Sbjct: 609 VSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKH 668

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           M     KP   T   L+ A C   +  +   +L  +KS
Sbjct: 669 MHKTGCKPDEVTYRTLVDAYCKIGKFEEVERILKFIKS 706


>gi|302767038|ref|XP_002966939.1| hypothetical protein SELMODRAFT_30641 [Selaginella moellendorffii]
 gi|300164930|gb|EFJ31538.1| hypothetical protein SELMODRAFT_30641 [Selaginella moellendorffii]
          Length = 506

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 185/388 (47%), Gaps = 22/388 (5%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP-----TL 92
           +G +   I+LL+DM   G     +  +     +CK+   +  A  FF+   N      ++
Sbjct: 89  RGNLRATIELLKDMAENGSTLSIQDLNGCLRGLCKAGN-VDGALEFFREAKNSFSLRASV 147

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA------- 145
           ST+++L++   ++K +   +++LR ++  GL+AD   Y+ +I +  KSG VD        
Sbjct: 148 STYSILVAALTAAKRNNDVYEILREMESVGLEADKDTYSLIIHSLCKSGMVDKAKVLVER 207

Query: 146 -MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
            +  N  PD  +++ +I    ++G VD A ++  E +A+ H      +T  +L+     A
Sbjct: 208 MISRNCVPDARIYDPVIEELSKTGRVDEAVEIAKEADAK-HCTSV--VTYNSLVLGFLKA 264

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            ++ R  +V+  + +     +P++YT  I     S+ G W FA  +   M + GV+PD V
Sbjct: 265 RRLKRGIKVFTRMARTG--PSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDAV 322

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             ++LI+      +   A  ++QE  ++G     I+Y+ L+   +      + +EL++ +
Sbjct: 323 TFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARADECVELFQRL 382

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM-KSLGLCPNTITYSILLVACERKDD 381
              KL P V T N +++ALC   +L +   +   M  S    PN ITY  L+     K +
Sbjct: 383 LDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTPPNAITYRALIHGLCLKME 442

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           +E  ++LL    +    P++  +  I+ 
Sbjct: 443 LERAVLLLDAMAKRDCAPDVACYGTIVA 470



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/257 (18%), Positives = 108/257 (42%), Gaps = 2/257 (0%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
            N  +    ++G VD A +   E       +     T   L+ A   A + +   E+ + 
Sbjct: 114 LNGCLRGLCKAGNVDGALEFFREAKNSF-SLRASVSTYSILVAALTAAKRNNDVYEILRE 172

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           +    ++   + Y++ I+   ++G  + A  + + M  +  +PD      +I+     G+
Sbjct: 173 MESVGLEADKDTYSLIIHSLCKSGMVDKAKVLVERMISRNCVPDARIYDPVIEELSKTGR 232

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           V+ A EI +EA  +  +  +++Y+SL+     A+  ++ ++++  M      P + T N 
Sbjct: 233 VDEAVEIAKEADAKHCT-SVVTYNSLVLGFLKARRLKRGIKVFTRMARTGPSPDIYTYNI 291

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           L   L          ++L  M   G+ P+ +T++ L+      +     + L+ +    G
Sbjct: 292 LFEGLSRHGLWRFAYKLLPRMNQDGVLPDAVTFNSLINGLVEDNRYHRAVTLIQEMVSRG 351

Query: 397 VIPNLVMFKCIIGMCSR 413
             PN + +  ++   +R
Sbjct: 352 CDPNAITYTILLKWLAR 368



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 99/224 (44%), Gaps = 5/224 (2%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           P+  T   +M A   AG++D+A  ++  M+   +       Y   I+      + E A  
Sbjct: 2   PNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDSTPPNAITYRALIHGLCLKMELERAVL 61

Query: 248 VYDDMTKK--GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
           + D +  K   ++P   +L          G + A  E+L++    G ++ I   +  +  
Sbjct: 62  LLDAVYFKLSWLVP-ATYLIIRFKACHERGNLRATIELLKDMAENGSTLSIQDLNGCLRG 120

Query: 306 CSNAKNWQKALELYEHMK-SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
              A N   ALE +   K S  L+ +VST + L+ AL    +     E+L +M+S+GL  
Sbjct: 121 LCKAGNVDGALEFFREAKNSFSLRASVSTYSILVAALTAAKRNNDVYEILREMESVGLEA 180

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +  TYS+++ +  +   V+   +L+ +      +P+  ++  +I
Sbjct: 181 DKDTYSLIIHSLCKSGMVDKAKVLVERMISRNCVPDARIYDPVI 224



 Score = 39.3 bits (90), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 11/139 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV-----PN 89
           L R  R  EC++L + +  + L      Y+     +CK+ + + +A R F ++       
Sbjct: 366 LARNARADECVELFQRLLDRKLAPNVYTYNTVMSALCKAGR-LDQAHRLFGVMLASDCTP 424

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P   T+  L+       + E A  +L  + +     D   Y T++    K G++D  FE 
Sbjct: 425 PNAITYRALIHGLCLKMELERAVLLLDAMAKRDCAPDVACYGTIVAAFCKQGRIDEAFEL 484

Query: 150 VKP-----DRVVFNALITA 163
           ++      D+V+F  L+ A
Sbjct: 485 LERMPFAGDKVMFRTLVRA 503


>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
          Length = 950

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 184/416 (44%), Gaps = 23/416 (5%)

Query: 19  ANYAHDVSEQLHS------YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR-- 66
           A+Y  D ++++H       Y ++I    +   +     L+ +ME +G+     +YH    
Sbjct: 396 ADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMD 455

Query: 67  -FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            +  V   +K +    R  +    PT+ T+  L+++         A +V R+++E G+K 
Sbjct: 456 GYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKH 515

Query: 126 DCKLYTTLITTCAK---SGKVDAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVL 177
           + K Y+ +I    K        A+FE++     KPD +++N +I+A    G +DRA   +
Sbjct: 516 NLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTV 575

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            EM    H   P   T   ++   A +G + R+ EV+ M+ +     T   +   IN   
Sbjct: 576 KEMQKLRH--RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLV 633

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           +    E A  + D+MT  GV  +E   + ++      G    AFE     +N+G+ V I 
Sbjct: 634 EKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIF 693

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +Y +L+ AC  +   Q AL + + M +  +       N LI        + +  +++  M
Sbjct: 694 TYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM 753

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           K  G+ P+  TY+  + AC +  D+      + + +  GV PN+  +  +I   +R
Sbjct: 754 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWAR 809



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 155/355 (43%), Gaps = 15/355 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N   + G+IS+ +++   M+ +G+    K Y +   N     K    AF  F    K   
Sbjct: 490 NLYTKVGKISKALEVSRVMKEEGVKHNLKTY-SMMINGFVKLKDWANAFAVFEDMVKEGM 548

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  +N ++S      + + A Q ++ +Q+   +   + +  +I   AKSG +    E
Sbjct: 549 KPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLE 608

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      P    FN LI    +   +++A ++L EM   +  V  +  T   +M+ 
Sbjct: 609 VFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMT--LAGVSANEHTYTKIMQG 666

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A+ G   +A E +  +    +      Y   +  C ++G  + A +V  +M+ + +  +
Sbjct: 667 YASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRN 726

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID     G V  A +++Q+ K +G+   I +Y+S + ACS A +  +A +  E
Sbjct: 727 SFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIE 786

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            M+++ +KP + T   LI          K +    +MK++G+ P+   Y  LL +
Sbjct: 787 EMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTS 841



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 147/333 (44%), Gaps = 19/333 (5%)

Query: 25  VSEQLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAI 77
           V   L +Y    N  ++    +    + EDM ++G+     +Y+   + F  +    +AI
Sbjct: 513 VKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAI 572

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           +      KL   PT  TF  ++   A S D   + +V  +++  G       +  LI   
Sbjct: 573 QTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGL 632

Query: 138 AKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            +  +++   E         V  +   +  ++      G   +AF+    +  E   +D 
Sbjct: 633 VEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNE--GLDV 690

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSV 248
           D  T  AL+KAC  +G++  A  V K +   NI     VY I I+  ++ GD WE A  +
Sbjct: 691 DIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWE-AADL 749

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
              M K+GV PD    ++ I     AG +  A + ++E +  G+   I +Y++L+   + 
Sbjct: 750 IQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWAR 809

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           A   +KAL  YE MK++ +KP  +  + L+T+L
Sbjct: 810 ASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSL 842



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 88/436 (20%), Positives = 167/436 (38%), Gaps = 111/436 (25%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
            PT   +  L+   A  +D + A   +R ++E G++     Y+ ++   +K+G  +A   
Sbjct: 339 TPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADY 398

Query: 146 MFENVKPDRVVFNA-----LITACGQSGAVDRAFDVLAEMNAE--------VHPV----- 187
            F+  K      NA     +I A  Q+  ++RA  ++ EM  E         H +     
Sbjct: 399 WFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYT 458

Query: 188 --------------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                                P  +T G L+      G++ +A EV +++ +  +K   +
Sbjct: 459 MVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLK 518

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y++ IN   +  DW  A +V++DM K+G+ PD +  + +I      G ++ A + ++E 
Sbjct: 519 TYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEM 578

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           +         ++  ++   + + + +++LE+++ M+     PTV T N LI  L +  Q+
Sbjct: 579 QKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQM 638

Query: 348 PKTMEVLSDMKSLGLCPNT-----------------------------------ITYSIL 372
            K +E+L +M   G+  N                                     TY  L
Sbjct: 639 EKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEAL 698

Query: 373 LVAC-----------------------------------ERKDDVEVGLMLLSQAKEDGV 397
           L AC                                    R+ DV     L+ Q K++GV
Sbjct: 699 LKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV 758

Query: 398 IPNLVMFKCIIGMCSR 413
            P++  +   I  CS+
Sbjct: 759 KPDIHTYTSFISACSK 774



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 35/255 (13%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P     G ++K     G + RARE ++ +    I  T  +YT  I+  +   D + A S 
Sbjct: 305 PSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSC 364

Query: 249 YDDMTKKGVIPDEVFLSALI---DFAGHA----------------------GKV------ 277
              M ++G+    V  S ++     AGHA                      GK+      
Sbjct: 365 VRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQ 424

Query: 278 ----EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
               E A  +++E + +GI   I  Y ++M   +   + +K L +++ +K     PTV T
Sbjct: 425 TCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVT 484

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
              LI       ++ K +EV   MK  G+  N  TYS+++    +  D      +     
Sbjct: 485 YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV 544

Query: 394 EDGVIPNLVMFKCII 408
           ++G+ P+++++  II
Sbjct: 545 KEGMKPDVILYNNII 559



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/255 (19%), Positives = 110/255 (43%), Gaps = 16/255 (6%)

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           + + +    + GD   A   ++ M  +G+ P     ++LI        ++ A   +++ K
Sbjct: 310 FGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMK 369

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +GI + +++YS ++G  S A + + A   ++  K I      S    +I A C    + 
Sbjct: 370 EEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNME 429

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +   ++ +M+  G+      Y  ++       D + GL++  + KE G  P +V + C+I
Sbjct: 430 RAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLI 489

Query: 409 ------GMCSRRYEKARTLNEHVLSFN--------SGRPQIENKWTSLALMVYREAIVAG 454
                 G  S+  E +R + E  +  N        +G  ++++ W + A  V+ + +  G
Sbjct: 490 NLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKD-WAN-AFAVFEDMVKEG 547

Query: 455 TIPTVEVVSKVLGCL 469
             P V + + ++   
Sbjct: 548 MKPDVILYNNIISAF 562



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 44/165 (26%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G + E  DL++ M+++G+                     
Sbjct: 720 ARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV--------------------- 758

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   +S C+ + D   A Q +  ++  G+K + K YTTLI   
Sbjct: 759 -----------KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 807

Query: 138 AKSG---KVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAF 174
           A++    K  + +E      +KPD+ V++ L+T+     ++  A+
Sbjct: 808 ARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAY 852



 Score = 44.3 bits (103), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 4/107 (3%)

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
           +N  NWQ  +  +E +     KP+ +    ++        + +  E    M++ G+ P +
Sbjct: 287 TNGDNWQAVISAFEKIS----KPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTS 342

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             Y+ L+ A     D++  L  + + KE+G+  +LV +  I+G  S+
Sbjct: 343 RIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSK 389


>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 942

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/420 (23%), Positives = 185/420 (44%), Gaps = 23/420 (5%)

Query: 15  NGKHANYAHDVSEQLHS------YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH 64
           N + A++  D ++++H       Y ++I    +   +     L+ +ME +G+     +YH
Sbjct: 395 NAEAADHWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYH 454

Query: 65  AR---FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121
                +  V   +K +    R  +    PT+ T+  L+++         A +V R+++E 
Sbjct: 455 TMMDGYTMVADEKKGLIVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEE 514

Query: 122 GLKADCKLYTTLITTCAK---SGKVDAMFENV-----KPDRVVFNALITACGQSGAVDRA 173
           G+K + K Y+ +I    K        A+FE++     KPD +++N +I A    G +DRA
Sbjct: 515 GVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRA 574

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
              + EM    H   P   T   ++   A +G + R+ EV+ M+ +     T   +   I
Sbjct: 575 IQTVKEMQKLRH--RPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALI 632

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           N   +    E A  + D+MT  GV  +E   + ++      G    AFE     +N+G+ 
Sbjct: 633 NGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLE 692

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
           V I +Y +L+ AC  +   Q AL + + M +  +       N LI        + +  ++
Sbjct: 693 VDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADL 752

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +  MK  G+ P+  TY+  + AC +  D+      + + +  GV PN+  +  +I   +R
Sbjct: 753 IQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWAR 812



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 157/355 (44%), Gaps = 15/355 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N   + G+IS+ +++   M+ +G+    K Y +   N     K    AF  F    K   
Sbjct: 493 NLYTKVGKISKALEVSRVMKEEGVKHNLKTY-SMMINGFVKLKDWANAFAVFEDMVKEGM 551

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  +N +++      + + A Q ++ +Q+   +   + +  +I   AKSG +    E
Sbjct: 552 KPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSLE 611

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      P    FNALI    +   +++A ++L EM   +  V  +  T   +M+ 
Sbjct: 612 VFDMMRRCGCVPTVHTFNALINGLVEKRQMEKAVEILDEMT--LAGVSANEHTYTKIMQG 669

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A+ G   +A E +  +    ++     Y   +  C ++G  + A +V  +M+ + +  +
Sbjct: 670 YASVGDTGKAFEYFTRLQNEGLEVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRN 729

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID     G V  A +++Q+ K +G+   I +Y+S + ACS A +  +A +  E
Sbjct: 730 SFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIE 789

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            M+++ +KP + T   LI          K +    +MK++GL P+   Y  LL +
Sbjct: 790 EMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAVGLKPDKAVYHCLLTS 844



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 148/333 (44%), Gaps = 19/333 (5%)

Query: 25  VSEQLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAI 77
           V   L +Y    N  ++    +    + EDM ++G+     +Y+   A F  +    +AI
Sbjct: 516 VKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAI 575

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           +      KL   PT  TF  +++  A S D   + +V  +++  G       +  LI   
Sbjct: 576 QTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGL 635

Query: 138 AKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            +  +++   E         V  +   +  ++      G   +AF+    +  E   ++ 
Sbjct: 636 VEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNE--GLEV 693

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSV 248
           D  T  AL+KAC  +G++  A  V K +   NI     VY I I+  ++ GD WE A  +
Sbjct: 694 DIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWE-AADL 752

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
              M K+GV PD    ++ I     AG +  A + ++E +  G+   I +Y++L+   + 
Sbjct: 753 IQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWAR 812

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           A   +KAL  YE MK++ LKP  +  + L+T+L
Sbjct: 813 ASLPEKALSCYEEMKAVGLKPDKAVYHCLLTSL 845



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/436 (20%), Positives = 168/436 (38%), Gaps = 111/436 (25%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
            PT   +  L+   A  +D E A   +R ++E G++     Y+ ++   +K+G  +A   
Sbjct: 342 TPTSRIYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADH 401

Query: 146 MFENVKPDRVVFNA-----LITACGQSGAVDRAFDVLAEMNAE--------VHPV----- 187
            F+  K      NA     +I A  Q+  ++RA  ++ EM  E         H +     
Sbjct: 402 WFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYT 461

Query: 188 --------------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                                P  +T G L+      G++ +A EV +++ +  +K   +
Sbjct: 462 MVADEKKGLIVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLK 521

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y++ IN   +  DW  A +V++DM K+G+ PD +  + +I      G ++ A + ++E 
Sbjct: 522 TYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIIAAFCGMGNMDRAIQTVKEM 581

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           +         ++  ++   + + + +++LE+++ M+     PTV T NALI  L +  Q+
Sbjct: 582 QKLRHRPTTRTFMPIINGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLVEKRQM 641

Query: 348 PKTMEVLSDMKSLGLCPNT-----------------------------------ITYSIL 372
            K +E+L +M   G+  N                                     TY  L
Sbjct: 642 EKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLEVDIFTYEAL 701

Query: 373 LVAC-----------------------------------ERKDDVEVGLMLLSQAKEDGV 397
           L AC                                    R+ DV     L+ Q K++GV
Sbjct: 702 LKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV 761

Query: 398 IPNLVMFKCIIGMCSR 413
            P++  +   I  CS+
Sbjct: 762 KPDIHTYTSFISACSK 777



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 140/332 (42%), Gaps = 20/332 (6%)

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           + + +    + GD   A   ++ M  +G+ P     ++LI        +E A   +++ K
Sbjct: 313 FGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMEEALSCVRKMK 372

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +GI + +++YS ++G  S A N + A   ++  K I      S    +I A C    + 
Sbjct: 373 EEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHCQTCNME 432

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +   ++ +M+  G+      Y  ++       D + GL++  + KE G  P +V + C+I
Sbjct: 433 RAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLIVFKRLKECGFTPTVVTYGCLI 492

Query: 409 ------GMCSRRYEKARTLNEHVLSFN--------SGRPQIENKWTSLALMVYREAIVAG 454
                 G  S+  E +R + E  +  N        +G  ++++ W + A  V+ + +  G
Sbjct: 493 NLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKD-WAN-AFAVFEDMVKEG 550

Query: 455 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAF 512
             P V + + ++       N D   + V+ +              +I+GF +     R+ 
Sbjct: 551 MKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIINGFAKSGDMRRSL 610

Query: 513 SLLEEAASFGIVPCV-SFKE-IPVVVDARKLE 542
            + +     G VP V +F   I  +V+ R++E
Sbjct: 611 EVFDMMRRCGCVPTVHTFNALINGLVEKRQME 642



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 99/256 (38%), Gaps = 35/256 (13%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P     G ++K     G + RARE ++ +    I  T  +YT  I+  +   D E A S 
Sbjct: 308 PSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMEEALSC 367

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK-------------------- 288
              M ++G+    V  S ++     AG  EAA     EAK                    
Sbjct: 368 VRKMKEEGIEMSLVTYSVIVGGFSKAGNAEAADHWFDEAKRIHKTLNASIYGKIIYAHCQ 427

Query: 289 ---------------NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
                           +GI   I  Y ++M   +   + +K L +++ +K     PTV T
Sbjct: 428 TCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLIVFKRLKECGFTPTVVT 487

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
              LI       ++ K +EV   MK  G+  N  TYS+++    +  D      +     
Sbjct: 488 YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV 547

Query: 394 EDGVIPNLVMFKCIIG 409
           ++G+ P+++++  II 
Sbjct: 548 KEGMKPDVILYNNIIA 563



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 44/165 (26%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G + E  DL++ M+++G+                     
Sbjct: 723 ARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV--------------------- 761

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   +S C+ + D   A Q +  ++  G+K + K YTTLI   
Sbjct: 762 -----------KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 810

Query: 138 AKSG---KVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAF 174
           A++    K  + +E      +KPD+ V++ L+T+     ++  A+
Sbjct: 811 ARASLPEKALSCYEEMKAVGLKPDKAVYHCLLTSLLSRASIAEAY 855


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/408 (25%), Positives = 195/408 (47%), Gaps = 25/408 (6%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-----QK 75
           V   L +YN L+    R+G +SE   L++ M  KGL      Y+A    +CK       K
Sbjct: 255 VYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAK 314

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            + +      L PN   +TFN ++      +D   A +V   + + G+  D   +++++ 
Sbjct: 315 RVLDEMLGVGLCPNA--ATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVG 372

Query: 136 TCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
             +++G++    A FE +K     PD V++  LI    ++  V  A  +  EM      +
Sbjct: 373 VFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVM 432

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFA 245
           D   +T   L+        +D A E++K + +  +   P+ YT+   I+   + G+   A
Sbjct: 433 DV--VTYNTLLNGLCRGKMLDDADELFKEMVERGV--FPDFYTLTTLIHGYCKDGNMTKA 488

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
            S+++ MT + + PD V  + L+D     G++E A E+  +  ++ I    IS+S L+  
Sbjct: 489 LSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILING 548

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
             +     +A  L++ MK   +KPT+ T N +I        L K  + L+ M S G+ P+
Sbjct: 549 FCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPD 608

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            ITY+ L+ +  ++++ +    L++  +E G++PNLV +  I+G  SR
Sbjct: 609 CITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSR 656



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 117/237 (49%), Gaps = 14/237 (5%)

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS-------QTGDWEF 244
           +    L++    A ++    E ++++ K   +G    + ++IN C+       + G  + 
Sbjct: 155 VVFDLLIRTYVQARKLREGSEAFQLLRK---RG----FCVSINACNALLGAIVKVGWVDL 207

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  VY+D  K G I +   L+ +++     GK++     L E + +G+   +++Y++L+ 
Sbjct: 208 AWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVN 267

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
           A        +A  L + M    LKP + T NALI  LC      +   VL +M  +GLCP
Sbjct: 268 AYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCP 327

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
           N  T++ +LV   RK+DV     + ++  + GV+P+L+ F  I+G+ SR  E  R L
Sbjct: 328 NAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRAL 384



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/396 (22%), Positives = 172/396 (43%), Gaps = 19/396 (4%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +YN LI    ++G       +L++M   GL      ++      C+ +  + EA R F
Sbjct: 294 LFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKED-VWEAERVF 352

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK- 139
             +      P L +F+ ++ V + + +   A      ++  GL  D  +YT LI    + 
Sbjct: 353 NEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRN 412

Query: 140 ---SGKVDAMFENVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
              SG +    E V+     D V +N L+    +   +D A ++  EM      V PD  
Sbjct: 413 DDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVE--RGVFPDFY 470

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T+  L+      G + +A  +++ +   ++K     Y   ++   + G+ E A  ++ DM
Sbjct: 471 TLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDM 530

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             + + P  +  S LI+     G V  AF +  E K +GI   +++ ++++     A N 
Sbjct: 531 ISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNL 590

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            KA +    M S  + P   T N LI +    +   +   ++++M+  GL PN +TY+ +
Sbjct: 591 SKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAI 650

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L    R   ++   M+L +  + G+ P+   +  +I
Sbjct: 651 LGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLI 686



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 171/380 (45%), Gaps = 23/380 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVPNP 90
           R+  + E   +  +M ++G++  D +  +    V      +  A  +F+      LVP+ 
Sbjct: 341 RKEDVWEAERVFNEMLQRGVVP-DLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDT 399

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAM 146
            + T  +L++    + D  GA ++   + E G   D   Y TL+    + GK+    D +
Sbjct: 400 VIYT--ILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCR-GKMLDDADEL 456

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F+      V PD      LI    + G + +A  +   M   +  + PD +T   LM   
Sbjct: 457 FKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMT--LRSLKPDVVTYNTLMDGF 514

Query: 202 ANAGQVDRAREV-YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              G++++A+E+ Y MI +  I  +   ++I IN     G    A  ++D+M +KG+ P 
Sbjct: 515 CKVGEMEKAKELWYDMISR-EIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPT 573

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + +I     AG +  A + L    ++G+    I+Y++L+ +    +N+ +A  L  
Sbjct: 574 LVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLIN 633

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           +M+   L P + T NA++       ++ +   VL  M   G+ P+  TY+ L+     KD
Sbjct: 634 NMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKD 693

Query: 381 DVEVGLMLLSQAKEDGVIPN 400
           +++    +  +  + G +P+
Sbjct: 694 NMKEAFRVHDEMLQRGFVPD 713



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 42/255 (16%)

Query: 196 ALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDM 252
           AL+ A    G VD A +VY+  +   NI     VYT  I +N   + G  +       +M
Sbjct: 194 ALLGAIVKVGWVDLAWKVYEDFVKSGNI---VNVYTLNIMVNALCKDGKLDNVGVYLSEM 250

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            +KGV  D V  + L++     G V  AF ++     +G+  G+ +Y++L+       ++
Sbjct: 251 EEKGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSY 310

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGD--------------------------- 345
           ++A  + + M  + L P  +T N ++   C  +                           
Sbjct: 311 ERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSI 370

Query: 346 --------QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
                   +L + +     MK +GL P+T+ Y+IL+    R DDV   L + ++  E G 
Sbjct: 371 VGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGC 430

Query: 398 IPNLVMFKCII-GMC 411
           + ++V +  ++ G+C
Sbjct: 431 VMDVVTYNTLLNGLC 445



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 117/254 (46%), Gaps = 20/254 (7%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
           + ++  +H Y    + G +++ + L E M  + L      Y+      CK  +  K    
Sbjct: 470 YTLTTLIHGY---CKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKEL 526

Query: 83  FFKLVPN---PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           ++ ++     P+  +F++L++  C+    SE AF++   ++E G+K       T+I    
Sbjct: 527 WYDMISREIFPSYISFSILINGFCSLGLVSE-AFRLWDEMKEKGIKPTLVTCNTIIKGYL 585

Query: 139 KSGKVDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           ++G +          + E V PD + +N LI +  +    DRAF ++  M  E   + P+
Sbjct: 586 RAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNM--EERGLLPN 643

Query: 191 HITIGALMKACANAGQVDRAREV-YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
            +T  A++   +  G++  A  V +KMI K  I      YT  IN      + + A  V+
Sbjct: 644 LVTYNAILGGFSRHGRMQEAEMVLHKMIDK-GINPDKSTYTSLINGYVSKDNMKEAFRVH 702

Query: 250 DDMTKKGVIPDEVF 263
           D+M ++G +PD+ F
Sbjct: 703 DEMLQRGFVPDDKF 716


>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g04810, chloroplastic; AltName: Full=Maize PPR4
           homolog; Short=AtPPR4; Flags: Precursor
 gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
           thaliana]
 gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 952

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/416 (23%), Positives = 184/416 (44%), Gaps = 23/416 (5%)

Query: 19  ANYAHDVSEQLHS------YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR-- 66
           A+Y  D ++++H       Y ++I    +   +     L+ +ME +G+     +YH    
Sbjct: 398 ADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMD 457

Query: 67  -FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            +  V   +K +    R  +    PT+ T+  L+++         A +V R+++E G+K 
Sbjct: 458 GYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKH 517

Query: 126 DCKLYTTLITTCAK---SGKVDAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVL 177
           + K Y+ +I    K        A+FE++     KPD +++N +I+A    G +DRA   +
Sbjct: 518 NLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTV 577

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            EM    H   P   T   ++   A +G + R+ EV+ M+ +     T   +   IN   
Sbjct: 578 KEMQKLRH--RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLV 635

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           +    E A  + D+MT  GV  +E   + ++      G    AFE     +N+G+ V I 
Sbjct: 636 EKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIF 695

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +Y +L+ AC  +   Q AL + + M +  +       N LI        + +  +++  M
Sbjct: 696 TYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM 755

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           K  G+ P+  TY+  + AC +  D+      + + +  GV PN+  +  +I   +R
Sbjct: 756 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWAR 811



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 155/355 (43%), Gaps = 15/355 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N   + G+IS+ +++   M+ +G+    K Y +   N     K    AF  F    K   
Sbjct: 492 NLYTKVGKISKALEVSRVMKEEGVKHNLKTY-SMMINGFVKLKDWANAFAVFEDMVKEGM 550

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  +N ++S      + + A Q ++ +Q+   +   + +  +I   AKSG +    E
Sbjct: 551 KPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLE 610

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      P    FN LI    +   +++A ++L EM   +  V  +  T   +M+ 
Sbjct: 611 VFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMT--LAGVSANEHTYTKIMQG 668

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A+ G   +A E +  +    +      Y   +  C ++G  + A +V  +M+ + +  +
Sbjct: 669 YASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRN 728

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID     G V  A +++Q+ K +G+   I +Y+S + ACS A +  +A +  E
Sbjct: 729 SFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIE 788

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            M+++ +KP + T   LI          K +    +MK++G+ P+   Y  LL +
Sbjct: 789 EMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTS 843



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 147/333 (44%), Gaps = 19/333 (5%)

Query: 25  VSEQLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAI 77
           V   L +Y    N  ++    +    + EDM ++G+     +Y+   + F  +    +AI
Sbjct: 515 VKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAI 574

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           +      KL   PT  TF  ++   A S D   + +V  +++  G       +  LI   
Sbjct: 575 QTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGL 634

Query: 138 AKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            +  +++   E         V  +   +  ++      G   +AF+    +  E   +D 
Sbjct: 635 VEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNE--GLDV 692

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSV 248
           D  T  AL+KAC  +G++  A  V K +   NI     VY I I+  ++ GD WE A  +
Sbjct: 693 DIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWE-AADL 751

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
              M K+GV PD    ++ I     AG +  A + ++E +  G+   I +Y++L+   + 
Sbjct: 752 IQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWAR 811

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           A   +KAL  YE MK++ +KP  +  + L+T+L
Sbjct: 812 ASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSL 844



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 88/436 (20%), Positives = 167/436 (38%), Gaps = 111/436 (25%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
            PT   +  L+   A  +D + A   +R ++E G++     Y+ ++   +K+G  +A   
Sbjct: 341 TPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADY 400

Query: 146 MFENVKPDRVVFNA-----LITACGQSGAVDRAFDVLAEMNAE--------VHPV----- 187
            F+  K      NA     +I A  Q+  ++RA  ++ EM  E         H +     
Sbjct: 401 WFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYT 460

Query: 188 --------------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                                P  +T G L+      G++ +A EV +++ +  +K   +
Sbjct: 461 MVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLK 520

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y++ IN   +  DW  A +V++DM K+G+ PD +  + +I      G ++ A + ++E 
Sbjct: 521 TYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEM 580

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           +         ++  ++   + + + +++LE+++ M+     PTV T N LI  L +  Q+
Sbjct: 581 QKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQM 640

Query: 348 PKTMEVLSDMKSLGLCPNT-----------------------------------ITYSIL 372
            K +E+L +M   G+  N                                     TY  L
Sbjct: 641 EKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEAL 700

Query: 373 LVAC-----------------------------------ERKDDVEVGLMLLSQAKEDGV 397
           L AC                                    R+ DV     L+ Q K++GV
Sbjct: 701 LKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV 760

Query: 398 IPNLVMFKCIIGMCSR 413
            P++  +   I  CS+
Sbjct: 761 KPDIHTYTSFISACSK 776



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 35/255 (13%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P     G ++K     G + RARE ++ +    I  T  +YT  I+  +   D + A S 
Sbjct: 307 PSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSC 366

Query: 249 YDDMTKKGVIPDEVFLSALI---DFAGHA----------------------GKV------ 277
              M ++G+    V  S ++     AGHA                      GK+      
Sbjct: 367 VRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQ 426

Query: 278 ----EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
               E A  +++E + +GI   I  Y ++M   +   + +K L +++ +K     PTV T
Sbjct: 427 TCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVT 486

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
              LI       ++ K +EV   MK  G+  N  TYS+++    +  D      +     
Sbjct: 487 YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV 546

Query: 394 EDGVIPNLVMFKCII 408
           ++G+ P+++++  II
Sbjct: 547 KEGMKPDVILYNNII 561



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/255 (19%), Positives = 110/255 (43%), Gaps = 16/255 (6%)

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           + + +    + GD   A   ++ M  +G+ P     ++LI        ++ A   +++ K
Sbjct: 312 FGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMK 371

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +GI + +++YS ++G  S A + + A   ++  K I      S    +I A C    + 
Sbjct: 372 EEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNME 431

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +   ++ +M+  G+      Y  ++       D + GL++  + KE G  P +V + C+I
Sbjct: 432 RAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLI 491

Query: 409 ------GMCSRRYEKARTLNEHVLSFN--------SGRPQIENKWTSLALMVYREAIVAG 454
                 G  S+  E +R + E  +  N        +G  ++++ W + A  V+ + +  G
Sbjct: 492 NLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKD-WAN-AFAVFEDMVKEG 549

Query: 455 TIPTVEVVSKVLGCL 469
             P V + + ++   
Sbjct: 550 MKPDVILYNNIISAF 564



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 44/165 (26%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G + E  DL++ M+++G+                     
Sbjct: 722 ARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV--------------------- 760

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   +S C+ + D   A Q +  ++  G+K + K YTTLI   
Sbjct: 761 -----------KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 809

Query: 138 AKSG---KVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAF 174
           A++    K  + +E      +KPD+ V++ L+T+     ++  A+
Sbjct: 810 ARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAY 854



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 4/107 (3%)

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
           +N  NWQ  +  +E +     KP+ +    ++        + +  E    M++ G+ P +
Sbjct: 289 TNGDNWQAVISAFEKIS----KPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTS 344

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             Y+ L+ A     D++  L  + + KE+G+  +LV +  I+G  S+
Sbjct: 345 RIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSK 391


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 187/401 (46%), Gaps = 17/401 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           R GR+   I   + M + G+ +    Y++     CK          F ++      PT +
Sbjct: 412 RSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTAT 471

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAM 146
           TF  L+S        + AF++   + + G+  +   +T LI+    + K+       D +
Sbjct: 472 TFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDEL 531

Query: 147 FE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
            E  +KP  V +N LI    + G +D+AF++L +M+ +   + PD  T   L+    + G
Sbjct: 532 VERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQK--GLVPDTYTYRPLISGLCSTG 589

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +V +A++    +HK N+K     Y+  ++   Q G    A S   +M ++G+  D V  +
Sbjct: 590 RVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHA 649

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LID A      +  F++L++  +QG+    + Y+S++   S   +++KA E ++ M + 
Sbjct: 650 VLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTE 709

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           +  P V T  AL+  LC   ++ +   +   M++  + PN+ITY   L    ++ +++  
Sbjct: 710 ECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEA 769

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNE 423
           +  L  A   G++ N V    II G C   R +E  + L+E
Sbjct: 770 IG-LHHAMLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSE 809



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 161/340 (47%), Gaps = 14/340 (4%)

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           ++ T+N+L+  +C   + SE A +V R +   GL AD   Y TL+    +  + +A    
Sbjct: 259 SIVTYNVLIHGLCKGDRVSE-AVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQL 317

Query: 146 MFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           M E V+    P     + L+    + G +D A++++ ++        P+     AL+ + 
Sbjct: 318 MDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGR--FGFVPNLFVYNALINSL 375

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G +D+A  +Y  +   N++     Y+I I+   ++G  + A S +D M + G+    
Sbjct: 376 CKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETV 435

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++LI+     G + AA  +  E  N+G+     +++SL+         QKA +LY  
Sbjct: 436 YAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNK 495

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    + P V T  ALI+ LC  +++ +  E+  ++    + P  +TY++L+    R   
Sbjct: 496 MIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGK 555

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKAR 419
           ++    LL    + G++P+   ++ +I G+CS  R  KA+
Sbjct: 556 IDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAK 595



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 154/352 (43%), Gaps = 22/352 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R G+I +  +LLEDM +KGL+     Y      +C + + + +A  F   
Sbjct: 542 TYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGR-VSKAKDFIDD 600

Query: 87  VPNPTLSTFNMLMSV-----CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +    +    M  S      C   +  E       ++Q  G+  D   +  LI    K  
Sbjct: 601 LHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQR-GINMDLVCHAVLIDGALKQP 659

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
                F        + ++PD V++ ++I    + G+  +AF+    M  E     P+ +T
Sbjct: 660 DRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTE--ECFPNVVT 717

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             ALM     AG++DRA  ++K +   N+      Y   ++  ++ G+ + A  ++  M 
Sbjct: 718 YTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAML 777

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           K G++ + V  + +I      G+   A ++L E    GI    ++YS+L+     + N  
Sbjct: 778 K-GLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVG 836

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
            +++L++ M +  L+P +   N LI   C   +L K  E+  DM   G+ P+
Sbjct: 837 ASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/392 (21%), Positives = 163/392 (41%), Gaps = 20/392 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF-----FKLVPN 89
           L +QG+I +  +L+  + R G +    VY+A   ++CK     K    +       L PN
Sbjct: 340 LRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPN 399

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
               T+++L+ S C S +         R++Q+ G+      Y +LI    K G + A   
Sbjct: 400 GI--TYSILIDSFCRSGRLDVAISYFDRMIQD-GIGETVYAYNSLINGQCKFGDLSAAES 456

Query: 146 MF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +F     + V+P    F +LI+   +   V +AF +  +M    + + P+  T  AL+  
Sbjct: 457 LFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMID--NGITPNVYTFTALISG 514

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             +  ++  A E++  + +  IK T   Y + I    + G  + A  + +DM +KG++PD
Sbjct: 515 LCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPD 574

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
                 LI      G+V  A + + +   Q + +  + YS+L+          +AL    
Sbjct: 575 TYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASC 634

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    +   +     LI             ++L DM   GL P+ + Y+ ++    ++ 
Sbjct: 635 EMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEG 694

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             +           +   PN+V +  ++ G+C
Sbjct: 695 SFKKAFECWDLMVTEECFPNVVTYTALMNGLC 726



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 95/450 (21%), Positives = 179/450 (39%), Gaps = 53/450 (11%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------ 148
           FN+L+     S     A  +++L+    L  + +  + L+    K  K   ++E      
Sbjct: 158 FNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESV 217

Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              V+PD    +A++ +  +     RA + +  M  E +  D   +T   L+       +
Sbjct: 218 NAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWM--EANGFDLSIVTYNVLIHGLCKGDR 275

Query: 207 VDRAREVYKMIHKYNIKGTPEVY-TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           V  A EV + +    +      Y T+ +  C +   +E    + D+M + G  P E  +S
Sbjct: 276 VSEAVEVKRSLGGKGLAADVVTYCTLVLGFC-RLQQFEAGIQLMDEMVELGFSPTEAAVS 334

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+D     GK++ A+E++ +    G    +  Y++L+ +     +  KA  LY +M  +
Sbjct: 335 GLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLM 394

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            L+P   T + LI + C   +L   +     M   G+      Y+ L+    +  D+   
Sbjct: 395 NLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAA 454

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 444
             L  +    GV P    F  +I G C                      Q++      A 
Sbjct: 455 ESLFIEMTNKGVEPTATTFTSLISGYCKDL-------------------QVQK-----AF 490

Query: 445 MVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCS- 499
            +Y + I  G  P V   + ++  L    ++   +++ + LVE        +K + +   
Sbjct: 491 KLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVER------KIKPTEVTYN 544

Query: 500 -LIDGF---GEYDPRAFSLLEEAASFGIVP 525
            LI+G+   G+ D +AF LLE+    G+VP
Sbjct: 545 VLIEGYCRDGKID-KAFELLEDMHQKGLVP 573



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 101/231 (43%), Gaps = 14/231 (6%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMS 100
            DLL+DM  +GL   D V +    +    + + K+AF  + L+      P + T+  LM+
Sbjct: 665 FDLLKDMHDQGLRP-DNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMN 723

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAMFENVKPD 153
               + + + A  + + +Q A +  +   Y   +    K G +        AM + +  +
Sbjct: 724 GLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLAN 783

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
            V  N +I    + G    A  VL+EM    + + PD +T   L+     +G V  + ++
Sbjct: 784 TVTHNIIIRGFCKLGRFHEATKVLSEMTE--NGIFPDCVTYSTLIYEYCRSGNVGASVKL 841

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           +  +    ++     Y + I  C   G+ + A  + DDM ++G+IPD  +L
Sbjct: 842 WDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPDNKYL 892


>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 696

 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 175/402 (43%), Gaps = 21/402 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF--RFF 84
           +YN LI    R G + + ++L+  M R G    D V ++           I      + +
Sbjct: 187 TYNALIGACARNGDVEKALNLMSKMRRDGY-QPDFVNYSSIIQYLTRSNKIDSPILQKLY 245

Query: 85  KLVPNPTLSTFNMLMS--VCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +    +     LM+  +   SK  D   A + L + Q  GL         +I     S
Sbjct: 246 TEIETDKIEIDGHLMNDIILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNS 305

Query: 141 GKV---DAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+    +A+FE ++     P    +NAL+    ++G++  A  V++EM  E   V PD  
Sbjct: 306 GRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEM--EKAGVKPDEQ 363

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+ A A+AG+ + AR V K +   N++    VY+  +      G+W+ +  V  DM
Sbjct: 364 TYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDM 423

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
              GV PD  F + +ID  G    ++ A    +   ++GI    +++++L+     +   
Sbjct: 424 KSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIRPDTVTWNTLINCHCKSGRH 483

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
             A EL+  M+     P ++T N +I ++ +  +  +    LS M+S GL PN+ITY+ L
Sbjct: 484 NMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTL 543

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           +    +       +  L   K  G  P   M+  +I   ++R
Sbjct: 544 VDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQR 585



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 158/373 (42%), Gaps = 13/373 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RFFKLVPNPTLSTF 95
           GR  E   L E++   G     + Y+A      K+       F      K    P   T+
Sbjct: 306 GRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTY 365

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           ++L+   A +   E A  VL+ ++ + ++ +  +Y+ ++ +    G+    F+       
Sbjct: 366 SLLIDAYAHAGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKS 425

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             V+PDR  +N +I   G+   +D A      M +E   + PD +T   L+     +G+ 
Sbjct: 426 NGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSE--GIRPDTVTWNTLINCHCKSGRH 483

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           + A E++  + +         Y I IN   +   WE        M  +G++P+ +  + L
Sbjct: 484 NMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTL 543

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           +D  G +G+   A E L+  K+ G       Y++L+ A +     + A+  +  M +  L
Sbjct: 544 VDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGL 603

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P++  +N+LI A  +  +  +   VL  MK   + P+ +TY+ L+ A  R +  +    
Sbjct: 604 TPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPA 663

Query: 388 LLSQAKEDGVIPN 400
           +  +    G  P+
Sbjct: 664 VYEEMVTSGCTPD 676



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 120/285 (42%), Gaps = 44/285 (15%)

Query: 101 VCASSKDS---EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEN----- 149
           + AS +D    + +FQVL+ ++  G++ D   Y  +I T  K   +D   A FE      
Sbjct: 403 ILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEG 462

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNA--------------------------- 182
           ++PD V +N LI    +SG  + A ++  EM                             
Sbjct: 463 IRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSPCITTYNIMINSMGEQQRWEQVS 522

Query: 183 ------EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
                 +   + P+ IT   L+     +G+   A E  +++     K T  +Y   IN  
Sbjct: 523 LFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAY 582

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           +Q G  E A + +  MT +G+ P  + L++LI+  G   +   AF +LQ  K   I   +
Sbjct: 583 AQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDV 642

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           ++Y++LM A    + +QK   +YE M +    P       L +AL
Sbjct: 643 VTYTTLMKALIRVEKFQKVPAVYEEMVTSGCTPDRKARAMLRSAL 687



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 129/287 (44%), Gaps = 11/287 (3%)

Query: 129 LYTTLITTCAKSGKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           LY+ LI    +S K+   F     + + P  + +NALI AC ++G V++A +++++M  +
Sbjct: 157 LYSILINALGRSEKLYEAFLLSQRQVLTP--LTYNALIGACARNGDVEKALNLMSKMRRD 214

Query: 184 VHPVDPDHITIGALMKACANAGQVDRA--REVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
            +   PD +   ++++    + ++D    +++Y  I    I+    +    I   S+ GD
Sbjct: 215 GY--QPDFVNYSSIIQYLTRSNKIDSPILQKLYTEIETDKIEIDGHLMNDIILGFSKAGD 272

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
              A          G+ P    L A+I   G++G+   A  + +E +  G      +Y++
Sbjct: 273 PTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGSEPRTRAYNA 332

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+       + + A  +   M+   +KP   T + LI A     +      VL +M++  
Sbjct: 333 LLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASN 392

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + PN+  YS +L +   K + +    +L   K +GV P+   +  +I
Sbjct: 393 VEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMI 439



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 129/305 (42%), Gaps = 27/305 (8%)

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF--E 282
           TP  Y   I  C++ GD E A ++   M + G  PD V  S++I +   + K+++    +
Sbjct: 184 TPLTYNALIGACARNGDVEKALNLMSKMRRDGYQPDFVNYSSIIQYLTRSNKIDSPILQK 243

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +  E +   I +     + ++   S A +  +A+      +S  L P  ST+ A+I AL 
Sbjct: 244 LYTEIETDKIEIDGHLMNDIILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALG 303

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
           +  +  +   +  +++  G  P T  Y+ LL    +   ++    ++S+ ++ GV P+  
Sbjct: 304 NSGRTHEAEALFEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQ 363

Query: 403 MFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVV 462
            +  +I   +                ++GR      W S A +V +E   +   P   V 
Sbjct: 364 TYSLLIDAYA----------------HAGR------WES-ARIVLKEMEASNVEPNSYVY 400

Query: 463 SKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAAS 520
           S++L   +         ++++++  +     R     +ID FG+Y+    A +  E   S
Sbjct: 401 SRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLS 460

Query: 521 FGIVP 525
            GI P
Sbjct: 461 EGIRP 465


>gi|302755288|ref|XP_002961068.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
 gi|300172007|gb|EFJ38607.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
          Length = 461

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 188/389 (48%), Gaps = 24/389 (6%)

Query: 38  QGRISECIDLLEDMERKG----LLDMDKVYHA--RFFNVCKSQKAIKEAFRFFKLVPNPT 91
           QG +   I+LL+DM   G    + D++       +  NV  + + ++EA   F L    +
Sbjct: 29  QGNLRATIELLKDMAENGSTLSIQDLNGCLRGLCKAGNVDGALEFLREAKNSFSL--RAS 86

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA------ 145
           +ST+++L++   ++K +  A ++L  ++  GL+AD   Y+ +I +  KSG VD       
Sbjct: 87  VSTYSILVAALTAAKRNNDALELLEQMESVGLEADKDTYSLIIHSLCKSGMVDKAKVLVE 146

Query: 146 --MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
             +  N  PD  +++ +I    ++G VD A ++  E +A+ H      +T  +L+     
Sbjct: 147 RMISRNCVPDARIYDPVIEELSKTGRVDEAVEIAKEADAK-HCTSV--VTYNSLVLGFLK 203

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A ++ R  +V+  + +     +P++YT  I     S+ G W FA  +   M + GV+PD 
Sbjct: 204 ARRLKRGIKVFTRMARTG--PSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDV 261

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  ++LI+      +   A  ++QE  ++G     I+Y+ L+   +      + +EL++ 
Sbjct: 262 VTFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARTDECVELFQR 321

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM-KSLGLCPNTITYSILLVACERKD 380
           +   KL P V T N +++ALC   +L +   +   M  S    PN ITY  L+     K 
Sbjct: 322 LLDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTPPNAITYRALIHGLCLKM 381

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           ++E  ++LL    + G  P++  +  I+ 
Sbjct: 382 ELERAVLLLDAMAKRGCAPDVACYGTIVA 410



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 113/264 (42%), Gaps = 5/264 (1%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
            N  +    ++G VD A + L E       +     T   L+ A   A + + A E+ + 
Sbjct: 54  LNGCLRGLCKAGNVDGALEFLREAKNS-FSLRASVSTYSILVAALTAAKRNNDALELLEQ 112

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           +    ++   + Y++ I+   ++G  + A  + + M  +  +PD      +I+     G+
Sbjct: 113 MESVGLEADKDTYSLIIHSLCKSGMVDKAKVLVERMISRNCVPDARIYDPVIEELSKTGR 172

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           V+ A EI +EA  +  +  +++Y+SL+     A+  ++ ++++  M      P + T N 
Sbjct: 173 VDEAVEIAKEADAKHCT-SVVTYNSLVLGFLKARRLKRGIKVFTRMARTGPSPDIYTYNI 231

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           L   L          ++L  M   G+ P+ +T++ L+      +     + L+ +    G
Sbjct: 232 LFEGLSRHGLWRFAYKLLPRMNQDGVLPDVVTFNSLINGLVEDNRYHRAVTLIQEMVSRG 291

Query: 397 VIPNLVMFKCIIGMCSRRYEKART 420
             PN + +  ++   +R    ART
Sbjct: 292 CDPNAITYTILLKWLAR---NART 312



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 11/139 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV-----PN 89
           L R  R  EC++L + +  + L      Y+     +CK+ + + +A R F ++       
Sbjct: 306 LARNARTDECVELFQRLLDRKLAPNVYTYNTVMSALCKAGR-LDQAHRLFGVMLASDCTP 364

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P   T+  L+       + E A  +L  + + G   D   Y T++    K G++D  FE 
Sbjct: 365 PNAITYRALIHGLCLKMELERAVLLLDAMAKRGCAPDVACYGTIVAAFCKQGRIDEAFEL 424

Query: 150 VKP-----DRVVFNALITA 163
           ++      D+V+F  L+ A
Sbjct: 425 LERMPFAGDKVMFRTLVRA 443


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 135/261 (51%), Gaps = 2/261 (0%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D   F  +I  C ++G ++++FD+L E+        P+ +    L+  C   G++++A++
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELRE--FGFSPNVVIYTTLIDGCCKKGEIEKAKD 219

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           ++  + K+ +      YT+ I+   + G  +    +Y+ M + GV P+    + +++   
Sbjct: 220 LFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLC 279

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
             G+ + AF++  E + +G+S  I++Y++L+G         +A E+ + MKS  + P + 
Sbjct: 280 KDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLI 339

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N LI   C   +L K + +  D+KS GL P+ +TY+IL+    +K D      ++ + 
Sbjct: 340 TYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEM 399

Query: 393 KEDGVIPNLVMFKCIIGMCSR 413
           +E G+ P+ V +  +I   +R
Sbjct: 400 EERGIKPSKVTYTILIDTFAR 420



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 160/349 (45%), Gaps = 18/349 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT--TLITTCAKSGKVDAMF 147
           P  + FN L++    S       Q      E+ +K    +Y+   +I  C ++G+++  F
Sbjct: 127 PGSNCFNNLLTFVVGSSSFN---QWWCFFNESKIKVVLDVYSFGIVIKGCCEAGEIEKSF 183

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +           P+ V++  LI  C + G +++A D+  EM      +  +  T   L+ 
Sbjct: 184 DLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGK--FGLVANEWTYTVLIH 241

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G   +  E+Y+ + ++ +      Y   +N   + G  + A  V+D+M ++GV  
Sbjct: 242 GLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSC 301

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V  + LI       K   A E++ + K+ GI+  +I+Y++L+      +   KAL L 
Sbjct: 302 NIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLC 361

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             +KS  L P++ T N L++  C         +V+ +M+  G+ P+ +TY+IL+    R 
Sbjct: 362 RDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARS 421

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNEHV 425
           D++E  + L S  +E G+ P++  +  +I G C   R  E +R     V
Sbjct: 422 DNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMV 470



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 145/327 (44%), Gaps = 11/327 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEN 149
           +F +++  C  + + E +F +L  ++E G   +  +YTTLI  C K G++    D  FE 
Sbjct: 165 SFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224

Query: 150 VK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
            K     +   +  LI    ++G   + F++  +M  + H V P+  T   +M      G
Sbjct: 225 GKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKM--QEHGVFPNLHTYNCVMNQLCKDG 282

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +   A +V+  + +  +      Y   I    +      A  V D M   G+ P+ +  +
Sbjct: 283 RTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYN 342

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LID      K+  A  + ++ K++G+S  +++Y+ L+       +   A ++ + M+  
Sbjct: 343 TLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEER 402

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            +KP+  T   LI      D + K +++ S M+ LGL P+  TYS+L+     K  +   
Sbjct: 403 GIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEA 462

Query: 386 LMLLSQAKEDGVIPNLVMFKC-IIGMC 411
             L     E    PN V++   ++G C
Sbjct: 463 SRLFKSMVEKKFEPNEVIYNTMVLGYC 489



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 155/362 (42%), Gaps = 28/362 (7%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVY----HARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           ++G I +  DL  +M + GL+  +  Y    H  F N  K     K+ F  ++ +     
Sbjct: 210 KKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIK-----KQGFEMYEKMQEHGV 264

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L T+N +M+       ++ AF+V   ++E G+  +   Y TLI    +  K +   E
Sbjct: 265 FPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANE 324

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    + P+ + +N LI        + +A  +  ++ +    + P  +T   L+  
Sbjct: 325 VMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKS--RGLSPSLVTYNILVSG 382

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G    A +V K + +  IK +   YTI I+  +++ + E A  +   M + G+ PD
Sbjct: 383 FCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPD 442

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL-MGACSNAKNWQKALELY 319
               S LI      G++  A  + +    +      + Y+++ +G C    ++ +AL L+
Sbjct: 443 VHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSY-RALRLF 501

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M+  +L P V++   +I  LC   +  +   ++  M   G+ P+    SIL +    K
Sbjct: 502 REMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDSGIGPSD---SILNLISRAK 558

Query: 380 DD 381
           +D
Sbjct: 559 ND 560



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 154/365 (42%), Gaps = 21/365 (5%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-----LVPNPTLS 93
           G I +  DLL ++   G      +Y       CK  +  K    FF+     LV N    
Sbjct: 177 GEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEW-- 234

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           T+ +L+     +   +  F++   +QE G+  +   Y  ++    K G+    F+     
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEM 294

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               V  + V +N LI    +    + A +V+ +M ++   ++P+ IT   L+       
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSD--GINPNLITYNTLIDGFCGVR 352

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++ +A  + + +    +  +   Y I ++   + GD   A  V  +M ++G+ P +V  +
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYT 412

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKS 324
            LID    +  +E A ++    +  G++  + +YS L+ G C   +   +A  L++ M  
Sbjct: 413 ILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGR-MNEASRLFKSMVE 471

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VAC-ERKDDV 382
            K +P     N ++   C      + + +  +M+   L PN  +Y  ++ V C ERK   
Sbjct: 472 KKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKE 531

Query: 383 EVGLM 387
             GL+
Sbjct: 532 AEGLV 536



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 68/306 (22%), Positives = 128/306 (41%), Gaps = 25/306 (8%)

Query: 23  HDVSEQLHSYN----RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V   LH+YN    +L + GR  +   + ++M  +G+      Y+     +C+  KA  
Sbjct: 262 HGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKA-N 320

Query: 79  EAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA      +     NP L T+N L+      +    A  + R ++  GL      Y  L+
Sbjct: 321 EANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILV 380

Query: 135 TTCAKSGK-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
           +   K G        V  M E  +KP +V +  LI    +S  +++A  + + M  E   
Sbjct: 381 SGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSM--EELG 438

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY-TIAINCCSQTGDWEFA 245
           + PD  T   L+      G+++ A  ++K + +   +    +Y T+ +  C +   +  A
Sbjct: 439 LTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYR-A 497

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             ++ +M +K + P+      +I+      K + A  ++++     I  GI    S++  
Sbjct: 498 LRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKM----IDSGIGPSDSILNL 553

Query: 306 CSNAKN 311
            S AKN
Sbjct: 554 ISRAKN 559


>gi|449530582|ref|XP_004172273.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Cucumis sativus]
          Length = 505

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 135/283 (47%), Gaps = 9/283 (3%)

Query: 138 AKSGKVDAMFE-------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           AKSG +D  +          + D   F   I A  ++G V + F++LA+M  E   V P+
Sbjct: 84  AKSGNLDRTWGFFTEYLGRTQFDVYSFWITIKAFCENGNVSKGFELLAQM--ETMGVSPN 141

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
                 L++AC   G +D+A+ ++  +    +     +YTI IN   + G  +    +Y 
Sbjct: 142 VFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFELYQ 201

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            M   GV+P+    ++LI      GK+  AF++  E   +G++   ++Y+ L+G      
Sbjct: 202 KMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISKRGVACNAVTYNILIGGLCRKG 261

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
              KA  L E MK   + PT  T N L+  LC+  QL K +  L  +K +GLCP  +TY+
Sbjct: 262 QVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYN 321

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           IL+    +  +  V   L+ + ++ G+ P+ V +  ++    R
Sbjct: 322 ILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVR 364



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 146/324 (45%), Gaps = 10/324 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P +  + +L+  C  + D + A  +   + + GL A+  +YT +I    K G     FE
Sbjct: 139 SPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLAANQYIYTIMINGFFKKGYKKDGFE 198

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    V P+   +N+LIT   + G +  AF V  E++     V  + +T   L+  
Sbjct: 199 LYQKMKLVGVLPNLYTYNSLITEYCRDGKLSLAFKVFDEISK--RGVACNAVTYNILIGG 256

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               GQV +A  + + + + +I  T   + + ++    TG  + A S  + +   G+ P 
Sbjct: 257 LCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPT 316

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + LI      G      E+++E +++GIS   ++Y+ LM     + + +KA E++ 
Sbjct: 317 LVTYNILISGFSKVGNSSVVSELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFH 376

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            MK I L P   T   LI  LC    + +  ++   M  + L PN + Y+ ++    ++ 
Sbjct: 377 LMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKEC 436

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMF 404
           +    L  L +  ++GV PN+  +
Sbjct: 437 NSYKALKFLEEMVKNGVTPNVASY 460



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 168/389 (43%), Gaps = 29/389 (7%)

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFE-----NVK 151
           + C +   S+G F++L  ++  G+  +  +YT LI  C ++G +D    MF       + 
Sbjct: 116 AFCENGNVSKG-FELLAQMETMGVSPNVFIYTILIEACCRNGDIDQAKVMFSRMDDLGLA 174

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
            ++ ++  +I    + G     F++  +M  ++  V P+  T  +L+      G++  A 
Sbjct: 175 ANQYIYTIMINGFFKKGYKKDGFELYQKM--KLVGVLPNLYTYNSLITEYCRDGKLSLAF 232

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           +V+  I K  +      Y I I    + G    A  + + M +  + P     + L+D  
Sbjct: 233 KVFDEISKRGVACNAVTYNILIGGLCRKGQVSKAEGLLERMKRAHINPTTRTFNMLMDGL 292

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
            + G+++ A   L++ K  G+   +++Y+ L+   S   N     EL   M+   + P+ 
Sbjct: 293 CNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVVSELVREMEDRGISPSK 352

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLS 390
            T   L+      D + K  E+   MK +GL P+  TY +L+   C + + VE   +  S
Sbjct: 353 VTYTILMNTFVRSDDIEKAYEMFHLMKRIGLVPDQHTYGVLIHGLCIKGNMVEASKLYKS 412

Query: 391 QAKEDGVIPNLVMFKCII-GMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALM-- 445
              E  + PN V++  +I G C     Y+  + L E V   N   P + +  +++ ++  
Sbjct: 413 MV-EMHLQPNDVIYNTMINGYCKECNSYKALKFLEEMVK--NGVTPNVASYISTIQILCK 469

Query: 446 ---------VYREAIVAGTIPTVEVVSKV 465
                    + +E   AG  P   + SKV
Sbjct: 470 DGKSIEAKRLLKEMTEAGLKPPESLCSKV 498



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/275 (23%), Positives = 112/275 (40%), Gaps = 48/275 (17%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+G++S+   LLE M+R  +                              
Sbjct: 249 TYNILIGGLCRKGQVSKAEGLLERMKRAHI------------------------------ 278

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             NPT  TFNMLM    ++   + A   L  ++  GL      Y  LI+  +K G    +
Sbjct: 279 --NPTTRTFNMLMDGLCNTGQLDKALSYLEKLKLIGLCPTLVTYNILISGFSKVGNSSVV 336

Query: 147 FENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            E V+        P +V +  L+    +S  +++A+++   M  +   + PD  T G L+
Sbjct: 337 SELVREMEDRGISPSKVTYTILMNTFVRSDDIEKAYEMFHLM--KRIGLVPDQHTYGVLI 394

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN-CCSQTGDWEFACSVYDDMTKKGV 257
                 G +  A ++YK + + +++    +Y   IN  C +   ++ A    ++M K GV
Sbjct: 395 HGLCIKGNMVEASKLYKSMVEMHLQPNDVIYNTMINGYCKECNSYK-ALKFLEEMVKNGV 453

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
            P+     + I      GK   A  +L+E    G+
Sbjct: 454 TPNVASYISTIQILCKDGKSIEAKRLLKEMTEAGL 488


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 198/438 (45%), Gaps = 39/438 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           FKL   PTL TFN L+S   S      A ++   + + G + D   Y+T+I    K G  
Sbjct: 2   FKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNT 61

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
               +          KP+ V +N +I +  +   V  A D  +EM  E  P  PD  T  
Sbjct: 62  TMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIP--PDVFTYS 119

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +++    N G+V+ A  ++K + + N+      +TI I+   +      A  V++ MT+K
Sbjct: 120 SILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEK 179

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G+ PD    +AL+D      +++ A ++      +G +  + SY+ L+     +    +A
Sbjct: 180 GLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEA 239

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             L   M    L P + T + L+   C   +  +  E+L +M S GL PN ITYSI+L  
Sbjct: 240 KGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDG 299

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSG-R 432
             +   ++    LL   +E  + PN+ ++  +I GMC+  + E AR L  ++  F  G +
Sbjct: 300 LCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNL--FVKGIQ 357

Query: 433 PQI-----------ENKWTSLALMVYREAIVAGTIP---TVEVVSKVLGCLQLPYNADIR 478
           P +           +   ++ A  ++RE  V G +P   T  V+  + G L+   N D  
Sbjct: 358 PTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVI--IQGFLR---NGDTP 412

Query: 479 E--RLVENL---GVSADA 491
              RL+E +   G SAD+
Sbjct: 413 NAVRLIEEMVGKGFSADS 430



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 165/384 (42%), Gaps = 42/384 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L + G  +  + LL+ ME KG       Y+    ++CK  + + EA  FF        
Sbjct: 53  NGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCK-DRLVTEAMDFFS------- 104

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFE- 148
                                   +V+E G+  D   Y++++      G+V+   ++F+ 
Sbjct: 105 -----------------------EMVKE-GIPPDVFTYSSILHGFCNLGRVNEATSLFKQ 140

Query: 149 ----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
               NV P++V F  LI    +   +  A+ V   M  +   ++PD  T  AL+    + 
Sbjct: 141 MVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEK--GLEPDVYTYNALVDGYCSR 198

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
            Q+D A++++ ++ +         Y I IN   ++G  + A  +  +M+ K + PD    
Sbjct: 199 SQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTY 258

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           S L+      G+ + A E+L+E  + G+   +I+YS ++       +  +A EL + M+ 
Sbjct: 259 STLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQE 318

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
            K++P +     LI  +C   +L    E+ S++   G+ P  +TY++++    +      
Sbjct: 319 SKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNE 378

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII 408
              L  +   +G +PN   +  II
Sbjct: 379 ACELFREMAVNGCLPNSCTYNVII 402



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 1/164 (0%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M K G+ P  V  + L+       K+  A ++  E    G    +I+YS+++       N
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
              AL+L + M+    KP V   N +I +LC    + + M+  S+M   G+ P+  TYS 
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSS 120

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
           +L        V     L  Q  E  VIPN V F  +I G+C +R
Sbjct: 121 ILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKR 164


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 153/330 (46%), Gaps = 12/330 (3%)

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMF-------ENVKPDRV 155
           SS D +GA+ +++ +  +G + +  +YTTLI T  +  +  DA+        + + PD  
Sbjct: 432 SSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTF 491

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
            +N+LI    ++  +D A   L EM    +   PD  T GA +     AG+   A +  K
Sbjct: 492 CYNSLIIGLSKAKKMDEARSFLLEMVE--NGFKPDAFTYGAFISGYIEAGEFASADKYVK 549

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            + +  +     + T  IN   + G    ACS +  M ++G++ D    + L++     G
Sbjct: 550 EMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNG 609

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           KV  A EI  E + +GI+  + SY +L+   S   N QKA  +++ M    L   V   N
Sbjct: 610 KVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYN 669

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            L+   C   ++ K  E+L +M   G  PN +TY  ++    +  D+     L  + K  
Sbjct: 670 MLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLK 729

Query: 396 GVIPNLVMFKCIIGMCSR--RYEKARTLNE 423
           G++P+  ++  ++  C R    E+A T+ E
Sbjct: 730 GLVPDSFVYTTLVDGCCRLNDVERAITIFE 759



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/423 (19%), Positives = 172/423 (40%), Gaps = 51/423 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
            +++ R  + + +L++M  +G+      Y++    + K++K  +      ++V N   P 
Sbjct: 465 FLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPD 524

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------D 144
             T+   +S    + +   A + ++ + E G+  +  L T LI    K GKV        
Sbjct: 525 AFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFR 584

Query: 145 AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           +M E  +  D   +  L+    ++G V+ A ++  EM  +   + PD  + G L+   + 
Sbjct: 585 SMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGK--GIAPDVFSYGTLIDGFSK 642

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G + +A  ++  + +  +     +Y + +    ++G+ E A  + D+M+ KG  P+ V 
Sbjct: 643 LGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVT 702

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
              +ID    +G +  AF++  E K +G+      Y++L+  C    + ++A+ ++E  +
Sbjct: 703 YCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNE 762

Query: 324 S----------------IKL----------------------KPTVSTMNALITALCDGD 345
                             K                       KP   T N +I  LC   
Sbjct: 763 KGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEG 822

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
            L    E+   M+   L P  ITY+ LL   ++         +  +    G+ P+ +M+ 
Sbjct: 823 NLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYS 882

Query: 406 CII 408
            II
Sbjct: 883 VII 885



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 155/339 (45%), Gaps = 24/339 (7%)

Query: 71  CKSQKAIKEAFRFFKLVPNPTLS---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           CK  K I+    F  +V    L    T+ +LM+    +     A ++   ++  G+  D 
Sbjct: 571 CKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDV 630

Query: 128 KLYTTLITTCAKSG---KVDAMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
             Y TLI   +K G   K  ++F+      +  + +++N L+    +SG +++A ++L E
Sbjct: 631 FSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDE 690

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE--VYTIAINCC 236
           M+ +  P  P+ +T   ++     +G +    E +++  +  +KG  P+  VYT  ++ C
Sbjct: 691 MSGKGFP--PNAVTYCTIIDGYCKSGDL---AEAFQLFDEMKLKGLVPDSFVYTTLVDGC 745

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-- 294
            +  D E A ++++   +KG        +ALI++    GK E   +++    +       
Sbjct: 746 CRLNDVERAITIFE-TNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFG 804

Query: 295 --GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
               ++Y+ ++       N + A EL+ HM+   L PTV T  +L+       +  +   
Sbjct: 805 KPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFS 864

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
           V  ++ + G+ P+ I YS+++ A  ++      L+LL Q
Sbjct: 865 VFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQ 903



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 97/460 (21%), Positives = 179/460 (38%), Gaps = 28/460 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P+  ++N+L+      K  E A  +L  +   GL AD   Y+ LI    K    DA    
Sbjct: 278 PSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANGL 337

Query: 146 ----MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               +      D ++++  I    + GA+++A  +   M      V P      +L++  
Sbjct: 338 VHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMIT--FGVTPGARAYASLIEGF 395

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                V +  E+   I K NI  +P  Y  A+     +GD + A ++  +M   G  P+ 
Sbjct: 396 FREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNV 455

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LI       +   A  +L+E + QGI+     Y+SL+   S AK   +A      
Sbjct: 456 VIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLE 515

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M     KP   T  A I+   +  +     + + +M   G+ PN +  + L+    +K  
Sbjct: 516 MVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGK 575

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII------GMCSRRYE-----KARTLNEHVLSFNS 430
           V           E G++ +   +  ++      G  +   E     + + +   V S+ +
Sbjct: 576 VIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGT 635

Query: 431 ---GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 487
              G  ++ N     A  ++ E + AG    V + + +LG        +  + L++ +  
Sbjct: 636 LIDGFSKLGNMQK--ASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSG 693

Query: 488 SADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
                     C++IDG+ +      AF L +E    G+VP
Sbjct: 694 KGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVP 733



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/341 (19%), Positives = 137/341 (40%), Gaps = 20/341 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   ++G++ E       M  +G+L   K Y      + K+ K + +A   F  +     
Sbjct: 568 NEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGK-VNDAEEIFHEMRGKGI 626

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + ++  L+   +   + + A  +   + +AGL ++  +Y  L+    +SG+++   E
Sbjct: 627 APDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKE 686

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      P+ V +  +I    +SG +  AF +  EM  ++  + PD      L+  
Sbjct: 687 LLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEM--KLKGLVPDSFVYTTLVDG 744

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS----VYDDMTKKG 256
           C     V+RA  +++   K     +   +   IN   + G  E        + D    K 
Sbjct: 745 CCRLNDVERAITIFETNEK-GCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKF 803

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
             P++V  + +ID+    G +EAA E+    +   +   +I+Y+SL+          +  
Sbjct: 804 GKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMF 863

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
            +++ + +  ++P     + +I A        K + +L  M
Sbjct: 864 SVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQM 904



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 16/183 (8%)

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           VY  M ++ V+ D      LI      G V+ A ++L + + +            +G  +
Sbjct: 211 VYKGMVERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEE------------LGTAT 258

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
              N  +ALEL + M    L P+  + N LI  LC   +L     +L +M S+GL  + +
Sbjct: 259 --LNVDEALELKKSMSCKGLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNV 316

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHV 425
            YSIL+    +  + +    L+ +    G   + +M+   I + S+    EKA+ L + +
Sbjct: 317 AYSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGM 376

Query: 426 LSF 428
           ++F
Sbjct: 377 ITF 379


>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Cucumis sativus]
          Length = 962

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 171/378 (45%), Gaps = 13/378 (3%)

Query: 47  LLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           L+ +ME +G+     +YH     +  V    K +    RF +   NP++ T+  L+++ A
Sbjct: 438 LVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYA 497

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAMFEN-----VKPDRV 155
                  A +V + ++ AG+K + K Y+ LI    K        A+FE+     +KPD V
Sbjct: 498 KLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVV 557

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           ++N +ITA    G +DRA   + EM  + H   P   T   ++   A  G++ +A +V+ 
Sbjct: 558 LYNNIITAFCGMGKMDRAVCTVKEMQKQRHK--PTTRTFMPIIHGFARKGEMKKALDVFD 615

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
           M+       T   Y   I    +    E A  + D+MT  GV P+E   + ++      G
Sbjct: 616 MMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLG 675

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
               AF    + +++G+ + + +Y +L+ AC  +   Q AL + + M +  +       N
Sbjct: 676 DTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYN 735

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI        + +  +++  MK  G+ P+  TY+  + AC +  D++     + + K  
Sbjct: 736 ILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSV 795

Query: 396 GVIPNLVMFKCIIGMCSR 413
           GV PN+  +  +I   +R
Sbjct: 796 GVKPNVKTYTTLINGWAR 813



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 110/484 (22%), Positives = 202/484 (41%), Gaps = 72/484 (14%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAM 146
           P+   +  L+   A  +D E A   +R ++E G++     Y+ L++  AK+G     D  
Sbjct: 344 PSSHVYTNLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHW 403

Query: 147 FENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAE--VHPVD----------- 188
           F+  K      + +++  +I A  Q   +D+A  ++ EM  E    P+D           
Sbjct: 404 FQEAKEKHSSLNAIIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTM 463

Query: 189 --------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                               P  IT G L+   A  G+V +A EV K +    IK   + 
Sbjct: 464 VGDEDKCLLVFERFKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKT 523

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y++ IN   +  DW  A ++++D+ K G+ PD V  + +I      GK++ A   ++E +
Sbjct: 524 YSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQ 583

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            Q       ++  ++   +     +KAL++++ M+     PTV T NALI  L +  ++ 
Sbjct: 584 KQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKME 643

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           K  ++L +M   G+ PN  TY+ ++       D        ++ +++G+  ++  ++ ++
Sbjct: 644 KAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALL 703

Query: 409 GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGC 468
             C +                SGR Q        AL V +E + A  IP    +  +L  
Sbjct: 704 KACCK----------------SGRMQ-------SALAVTKE-MSAQNIPRNTFIYNIL-I 738

Query: 469 LQLPYNADIRE-----RLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGI 523
                  DI E     + ++  GV  D    ++  +     G+   RA   +EE  S G+
Sbjct: 739 DGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQ-RATKTIEEMKSVGV 797

Query: 524 VPCV 527
            P V
Sbjct: 798 KPNV 801



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 160/355 (45%), Gaps = 15/355 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPN-- 89
           N   + G++S+ +++ ++ME  G+    K Y +   N     K    AF  F+ L+ +  
Sbjct: 494 NLYAKLGKVSKALEVSKEMEHAGIKHNMKTY-SMLINGFLKLKDWANAFAIFEDLIKDGI 552

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
            P +  +N +++        + A   ++ +Q+   K   + +  +I   A+ G++     
Sbjct: 553 KPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALD 612

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +F+ ++     P    +NALI    +   +++A  +L EM   +  V P+  T   +M  
Sbjct: 613 VFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMT--LAGVSPNEHTYTTIMHG 670

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A+ G   +A   +  +    ++     Y   +  C ++G  + A +V  +M+ + +  +
Sbjct: 671 YASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRN 730

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID     G +  A +++Q+ K +G+   I +Y+S + ACS A + Q+A +  E
Sbjct: 731 TFIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIE 790

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            MKS+ +KP V T   LI          K +    +MK  GL P+   Y  L+ +
Sbjct: 791 EMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTS 845



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 89/220 (40%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P     G ++      G + RARE ++ +    I+ +  VYT  I+  +   D E A S 
Sbjct: 309 PSRKEYGLMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYTNLIHAYAVGRDMEEALSC 368

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
              M ++G+    V  S L+      G  E+A    QEAK +  S+  I Y +++ A   
Sbjct: 369 VRKMKEEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYCQ 428

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
             N  KA  L   M+   +   +   + ++          K + V    K  GL P+ IT
Sbjct: 429 RCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVIT 488

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           Y  L+    +   V   L +  + +  G+  N+  +  +I
Sbjct: 489 YGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLI 528



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/293 (21%), Positives = 124/293 (42%), Gaps = 29/293 (9%)

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y + +N  ++ GD   A   ++ M  +G+ P     + LI        +E A   +++ K
Sbjct: 314 YGLMVNYYTRRGDMHRARETFEKMRARGIEPSSHVYTNLIHAYAVGRDMEEALSCVRKMK 373

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +GI + +++YS L+   +   N + A   ++  K             +I A C    + 
Sbjct: 374 EEGIEMSLVTYSILVSGFAKTGNAESADHWFQEAKEKHSSLNAIIYGNIIYAYCQRCNMD 433

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           K   ++ +M+  G+      Y  ++       D +  L++  + KE G+ P+++ + C+I
Sbjct: 434 KAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLI 493

Query: 409 GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL-G 467
            +    Y K   +                   S AL V +E   AG    ++  S ++ G
Sbjct: 494 NL----YAKLGKV-------------------SKALEVSKEMEHAGIKHNMKTYSMLING 530

Query: 468 CLQLPYNAD---IRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEE 517
            L+L   A+   I E L+++ G+  D +  +N+ +   G G+ D RA   ++E
Sbjct: 531 FLKLKDWANAFAIFEDLIKD-GIKPDVVLYNNIITAFCGMGKMD-RAVCTVKE 581


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 190/421 (45%), Gaps = 27/421 (6%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
           Y+   +++C+  K +KEA R    +      P + +++ ++       + + A +++  +
Sbjct: 261 YNIIIYSLCRLGK-VKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDM 319

Query: 119 QEAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAV 170
           Q  GLK +   Y ++I    K GK         + M + + PD VV+  LI    + G V
Sbjct: 320 QIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHV 379

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
             A     EM ++   + PD+IT   L++     G+V   + ++  +    +K     YT
Sbjct: 380 RTANKWFDEMLSK--KISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYT 437

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             I+   + G+   A S++++M + G+ P+ V   ALID     G+++ A E+L E + +
Sbjct: 438 TLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKK 497

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G+ + +  Y+S++     A N ++A++L + M+   + P   T   +I A C    + K 
Sbjct: 498 GLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKA 557

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
            ++L +M   GL P  +T+++L+        +E G  LL    E G++P+ + +  ++  
Sbjct: 558 HKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQ 617

Query: 411 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPT 458
              R     T   +    N G     N +  L            A  +Y+E I  G +PT
Sbjct: 618 HCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPT 677

Query: 459 V 459
           V
Sbjct: 678 V 678



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 145/313 (46%), Gaps = 10/313 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P   T+  L+ V   + +   AF +   + + G+  +   Y  LI    K G++D   E 
Sbjct: 431 PDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANEL 490

Query: 150 VKPDR--------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +   R         ++N+++    ++G +++A  ++ EM  EV  +DPD IT   ++ A 
Sbjct: 491 LDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM--EVAGIDPDAITYTTVIDAY 548

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G +D+A ++ + +    ++ T   + + +N     G  E    +   M +KG++PD 
Sbjct: 549 CRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDA 608

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + L+        +    +I +  +NQG++    +Y+ L+     A+N ++A  LY+ 
Sbjct: 609 ITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKE 668

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M      PTV++ NALI       ++ +  E+  +M+  GL  +   Y+  +  C  + D
Sbjct: 669 MIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGD 728

Query: 382 VEVGLMLLSQAKE 394
           VE+ L L  +A E
Sbjct: 729 VEITLNLCDEAIE 741



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 92/438 (21%), Positives = 181/438 (41%), Gaps = 64/438 (14%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAFRFFKLVPNPTL 92
           G + + + L++DM+ KGL      Y++    +CK      ++K ++E     K++P+  +
Sbjct: 307 GELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQ-KIIPDNVV 365

Query: 93  ST-----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
            T     F  L  V  ++K  +             +  D   YTTLI    + GKV    
Sbjct: 366 YTTLIHGFFKLGHVRTANKWFDEMLS-------KKISPDYITYTTLIQGFGQGGKVIEPQ 418

Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
               + +   +KPD V +  LI    ++G +  AF +  EM      + P+ +T GAL+ 
Sbjct: 419 NLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQ--MGMTPNIVTYGALID 476

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G++D A E+   + K  ++    +Y   +N   + G+ E A  +  +M   G+ P
Sbjct: 477 GLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDP 536

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---------------- 303
           D +  + +ID     G ++ A ++LQE  ++G+   +++++ LM                
Sbjct: 537 DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLL 596

Query: 304 ------GACSNAKNWQKALE-------------LYEHMKSIKLKPTVSTMNALITALCDG 344
                 G   +A  +   ++             +Y+ M++  + P  +T N LI   C  
Sbjct: 597 GWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKA 656

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
             L +   +  +M   G  P   +Y+ L+    +K  +     L  + +  G++ +  ++
Sbjct: 657 RNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIY 716

Query: 405 KCIIGMCSRRYEKARTLN 422
              + MC    +   TLN
Sbjct: 717 NFFVDMCYEEGDVEITLN 734



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 115/292 (39%), Gaps = 42/292 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L + G +    +LL++M +KGL            NVC                       
Sbjct: 478 LCKHGELDTANELLDEMRKKGLQ----------LNVC----------------------I 505

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--------M 146
           +N +++    + + E A ++++ ++ AG+  D   YTT+I    + G +D         +
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              ++P  V FN L+      G ++    +L  M  +   + PD IT   LMK       
Sbjct: 566 DRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEK--GIVPDAITYNTLMKQHCIRNS 623

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           ++   ++YK +    +      Y I I    +  + + A  +Y +M +KG +P     +A
Sbjct: 624 MNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNA 683

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           LI       K+  A E+ +E +  G+      Y+  +  C    + +  L L
Sbjct: 684 LIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNL 735



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 109/241 (45%), Gaps = 21/241 (8%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHA-------RFFNVCKSQKAIKEAFRFFK 85
           N + + G I + I L+++ME  G+ D D + +        R  ++ K+ K ++E      
Sbjct: 511 NGICKAGNIEQAIKLMKEMEVAGI-DPDAITYTTVIDAYCRLGDIDKAHKLLQE---MLD 566

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSG--- 141
               PT+ TFN+LM+        E   ++L  + E G+  D   Y TL+   C ++    
Sbjct: 567 RGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNT 626

Query: 142 --KVDAMFEN--VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
             K+     N  V PD   +N LI    ++  +  A+ +  EM  + +   P   +  AL
Sbjct: 627 TTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYV--PTVTSYNAL 684

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +K      ++  ARE+++ +  + +    E+Y   ++ C + GD E   ++ D+  +K +
Sbjct: 685 IKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEKCL 744

Query: 258 I 258
           +
Sbjct: 745 L 745



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 89/201 (44%), Gaps = 13/201 (6%)

Query: 214 YKMIHKYNIKG-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALI 268
           +++I+ Y   G  P  + I      + G    A  + D +   G++        FLS + 
Sbjct: 177 HRLIYTYKYWGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRI- 235

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
             A ++  +E A ++  E    GIS    SY+ ++ +       ++A  L   M      
Sbjct: 236 --ANNSEGIEMAIKVFCE---YGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSST 290

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLM 387
           P V + + +I   C   +L K ++++ DM+  GL PN  TY SI+L+ C+     E    
Sbjct: 291 PDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAE-K 349

Query: 388 LLSQAKEDGVIPNLVMFKCII 408
           +L +     +IP+ V++  +I
Sbjct: 350 VLREMMSQKIIPDNVVYTTLI 370


>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
 gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 150/320 (46%), Gaps = 10/320 (3%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDAMFEN-----VKPDR 154
           A + D   A + L +VQ +GL         +I     C ++ + +A+FE      +KP  
Sbjct: 281 AKAGDLSKALEFLGVVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRT 340

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
             +NAL+    ++G +  A  V++EM  E   V P+  T   L+ A  NAG+ + AR V 
Sbjct: 341 RAYNALLRGYVKAGLLKDAEFVVSEM--ERSGVSPNEQTYSFLIDAYGNAGRWESARIVL 398

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           K +   N++    V++  ++     G+W+ +  V  +M   GV PD VF + +ID  G  
Sbjct: 399 KEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMENSGVRPDRVFYNVMIDTFGKF 458

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
             ++ A        ++GI    +++++L+     A    +A EL+E M      P  +T 
Sbjct: 459 NCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSPCNTTF 518

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N +I +  D ++      +L+ M+S GL PN++TY+ L+    +       +  L   K 
Sbjct: 519 NIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKA 578

Query: 395 DGVIPNLVMFKCIIGMCSRR 414
            G+ P+  M+  +I   ++R
Sbjct: 579 AGLKPSSTMYNALINAYAQR 598



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 161/351 (45%), Gaps = 13/351 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           GR  E   + E+M   GL    + Y+A      K+       F   ++  +   P   T+
Sbjct: 319 GRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPNEQTY 378

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           + L+    ++   E A  VL+ ++ + ++ +  +++ ++++    G+    F+       
Sbjct: 379 SFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQVLREMEN 438

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             V+PDRV +N +I   G+   +D A      M +E   ++PD +T   L+     AG+ 
Sbjct: 439 SGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSE--GIEPDTVTWNTLIDCHCRAGKH 496

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           DRA E+++ + +         + I IN       W+   ++   M  +G++P+ V  + L
Sbjct: 497 DRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTL 556

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ID  G +G+   A E L + K  G+      Y++L+ A +     ++A+  +  M+   L
Sbjct: 557 IDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGL 616

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           KP++  +N+LI A  +  +  +   VL  MK   L P+ +TY+ L+ A  R
Sbjct: 617 KPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKALIR 667



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 166/377 (44%), Gaps = 27/377 (7%)

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMF-------ENVKPD 153
           C  + ++E  F+ +R   + GLK   + Y  L+    K+G + DA F         V P+
Sbjct: 318 CGRTVEAEAIFEEMR---DNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVSPN 374

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
              ++ LI A G +G  + A  VL EM  E   V P+      ++ +  + G+  ++ +V
Sbjct: 375 EQTYSFLIDAYGNAGRWESARIVLKEM--EASNVQPNAYVFSRILSSYRDKGEWQKSFQV 432

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
            + +    ++     Y + I+   +    + A + +D M  +G+ PD V  + LID    
Sbjct: 433 LREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCR 492

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           AGK + A E+ +E    G S    +++ ++ +  + + W     L  HM+S  L P   T
Sbjct: 493 AGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVT 552

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
              LI       +    +E L DMK+ GL P++  Y+ L+ A  ++   E  +      +
Sbjct: 553 YTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMR 612

Query: 394 EDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM------ 445
            DG+ P+L+    +I      RR  +A T+ ++ +  N  +P +    T +  +      
Sbjct: 613 VDGLKPSLLALNSLINAFGEDRRDAEAFTVLQY-MKENDLKPDVVTYTTLMKALIRVEKF 671

Query: 446 -----VYREAIVAGTIP 457
                VY E I++G  P
Sbjct: 672 DKVPSVYEEMILSGCTP 688



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 109/465 (23%), Positives = 201/465 (43%), Gaps = 30/465 (6%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
           N T  T+N L+S CA + D E A  ++  +++ G  +D   Y+ +I +  +  +VD+   
Sbjct: 195 NLTPLTYNALISACARNNDLEKALNLITRMRQDGYPSDFVNYSLIIRSLMRKNRVDSAIL 254

Query: 146 --MFENVKPDRV-----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
             ++  ++ D++     + N +I    ++G + +A + L  +      V     T+ A++
Sbjct: 255 QKLYREIECDKLELDVQLSNDIIVGFAKAGDLSKALEFLGVVQGSGLSVKT--ATLVAVI 312

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
            A  N G+   A  +++ +    +K     Y   +    + G  + A  V  +M + GV 
Sbjct: 313 WALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAGLLKDAEFVVSEMERSGVS 372

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+E   S LID  G+AG+ E+A  +L+E +   +      +S ++ +  +   WQK+ ++
Sbjct: 373 PNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQKSFQV 432

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
              M++  ++P     N +I      + L   M     M S G+ P+T+T++ L+    R
Sbjct: 433 LREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLIDCHCR 492

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLSFNSGRPQIE 436
               +    L  +  E G  P    F  +I       R++  + L  H+ S   G     
Sbjct: 493 AGKHDRAEELFEEMMEGGYSPCNTTFNIMINSFGDQERWDDVKNLLAHMRS--QGLVPNS 550

Query: 437 NKWTSLALMVYREAIVAGTIPTVEVVSKV-LGCLQLPYNADIR---ERLVENLGVSA--- 489
             +T+L  +  +       I  ++ +    L      YNA I    +R +    VSA   
Sbjct: 551 VTYTTLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRA 610

Query: 490 ---DALKRSNLC--SLIDGFGE--YDPRAFSLLEEAASFGIVPCV 527
              D LK S L   SLI+ FGE   D  AF++L+      + P V
Sbjct: 611 MRVDGLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDV 655


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 168/376 (44%), Gaps = 23/376 (6%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D   F  +I  C ++G   + F +LA +  E   + P+ +    L+  C   G V  A+ 
Sbjct: 157 DAYSFGIMIKGCCEAGYFVKGFRLLAML--EEFGLSPNVVIYTTLIDGCCKDGNVMLAKN 214

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           ++  +++  +   P  Y++ +N   + G       +Y++M + G++P+    + LI    
Sbjct: 215 LFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYC 274

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
           + G V+ AF++  E + +GI+ G+++Y+ L+G     K + +A++L   +  + L P + 
Sbjct: 275 NDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIV 334

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N LI   CD  ++   + + + +KS GL P  +TY+ L+    + +++   L L+ + 
Sbjct: 335 TYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEM 394

Query: 393 KEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 452
           +E  + P+ V +  +I   +R     +    H L   SG   + + +T   L+      V
Sbjct: 395 EERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGL--VPDVYTYSVLL--HGLCV 450

Query: 453 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAF 512
            G +     + K LG + L  N+ I   ++        +                  RA 
Sbjct: 451 HGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSY-----------------RAL 493

Query: 513 SLLEEAASFGIVPCVS 528
            LL E    G+VP V+
Sbjct: 494 RLLNEMVQSGMVPNVA 509



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 105/469 (22%), Positives = 200/469 (42%), Gaps = 67/469 (14%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N  +      + +  L  M  +G + +   ++     + +S    K  + F +L     L
Sbjct: 97  NAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNELKSKVVL 156

Query: 93  S--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD------ 144
              +F +++  C  +      F++L +++E GL  +  +YTTLI  C K G V       
Sbjct: 157 DAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLF 216

Query: 145 --------------------------------AMFENVK-----PDRVVFNALITACGQS 167
                                            M+EN+K     P+   +N LI+     
Sbjct: 217 CKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCND 276

Query: 168 GAVDRAFDVLAEMNAE--VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 224
           G VD+AF V AEM  +     V   +I IG L +         +  E  K++HK N  G 
Sbjct: 277 GMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRG-------KKFGEAVKLVHKVNKVGL 329

Query: 225 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           +P +  Y I IN        + A  +++ +   G+ P  V  + LI        +  A +
Sbjct: 330 SPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALD 389

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +++E + + I+   ++Y+ L+ A +   + +KA E++  M+   L P V T + L+  LC
Sbjct: 390 LVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLC 449

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
               + +  ++   +  + L PN++ Y+ ++    ++      L LL++  + G++PN+ 
Sbjct: 450 VHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVA 509

Query: 403 MFKCIIGMCSR--RYEKARTLNEHVLSFNSG-RPQIENKWTSLALMVYR 448
            F   IG+  R  ++++A  L   ++  NSG +P +     SL  MV++
Sbjct: 510 SFCSTIGLLCRDEKWKEAELLLGQMI--NSGLKPSV-----SLYKMVHK 551



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 140/322 (43%), Gaps = 25/322 (7%)

Query: 30  HSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H+Y    N   +QG   E   + E+M+R G++     Y+      C +   + +AF+ F 
Sbjct: 229 HTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYC-NDGMVDKAFKVFA 287

Query: 86  LVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +    ++    T+N+L+      K    A +++  V + GL  +   Y  LI       
Sbjct: 288 EMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVR 347

Query: 142 KVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K+D+   +F  +K     P  V +N LI    +   +  A D++ EM  E   + P  +T
Sbjct: 348 KMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEM--EERCIAPSKVT 405

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI---NCCSQTGDWEFACSVYD 250
              L+ A A     ++A E++ ++ K  +   P+VYT ++     C   G+ + A  ++ 
Sbjct: 406 YTILIDAFARLNHTEKACEMHSLMEKSGL--VPDVYTYSVLLHGLCVH-GNMKEASKLFK 462

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            + +  + P+ V  + +I      G    A  +L E    G+   + S+ S +G     +
Sbjct: 463 SLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASFCSTIGLLCRDE 522

Query: 311 NWQKALELYEHMKSIKLKPTVS 332
            W++A  L   M +  LKP+VS
Sbjct: 523 KWKEAELLLGQMINSGLKPSVS 544



 Score = 40.4 bits (93), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y +++ A  ++ +  +AL    HM      P  +T N L+  L   +   K   + +++K
Sbjct: 92  YDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNELK 151

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           S  +  +  ++ I++  C        G  LL+  +E G+ PN+V++  +I  C +
Sbjct: 152 S-KVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCK 205


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 111/464 (23%), Positives = 198/464 (42%), Gaps = 28/464 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T N+L+     + D + A  ++  +   GLK     + +++    K  + D   E 
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEV 249

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  +V PD   FN LI    + G V+ A     EM  +   V PD ++   L+   
Sbjct: 250 FRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEM--QQRGVTPDVVSFSCLIGLF 307

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           +  G++D A    + +    +     +YT+ I    + G    A  V D+M   G +PD 
Sbjct: 308 STRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDV 367

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L++      ++  A E+L E K +G++  + ++++L+       N++KAL+L++ 
Sbjct: 368 VTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDT 427

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +   +L+P V   N+LI  +C    L K  E+  DM +  + PN +TYSIL+ +   K  
Sbjct: 428 LLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQ 487

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEK------ARTLNEHVL----SFNS 430
           VE     L +    G +PN++ +  II G C     K       + + +++L    +FN+
Sbjct: 488 VEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNT 547

Query: 431 ---GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 487
              G  + EN   +  +    E  +    P     + ++       N +   R+ + +G 
Sbjct: 548 LIHGYIKEENMHGAFNVFNIMEKEMVQ--PDAVTYNMIINGFSEQGNMEEAGRVFKKMGA 605

Query: 488 SADALKRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIVPCVSF 529
           S     R    SLI+G         AF L +E    G  P   F
Sbjct: 606 SGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFAPDDKF 649



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 129/265 (48%), Gaps = 3/265 (1%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V PD V  N LI A  ++G VD A  ++  M  +   + P  +T  +++K      + D+
Sbjct: 188 VFPDVVTHNVLIDARFRAGDVDAAIALVDSMANK--GLKPGIVTFNSVLKGLCKHRRFDK 245

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A+EV++ + + ++      + I I    + G+ E A   Y +M ++GV PD V  S LI 
Sbjct: 246 AKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIG 305

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                GK++ A   L+E K  G+    + Y+ ++G    A +  +AL + + M  +   P
Sbjct: 306 LFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLP 365

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            V T N L+  LC   +L    E+L++MK  G+ P+  T++ L+    R  + E  L L 
Sbjct: 366 DVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLF 425

Query: 390 SQAKEDGVIPNLVMFKCII-GMCSR 413
                  + P++V +  +I GMC +
Sbjct: 426 DTLLHQRLRPDVVAYNSLIDGMCRK 450



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 96/439 (21%), Positives = 179/439 (40%), Gaps = 57/439 (12%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFF-KLVPNPTL 92
            R G +   I L++ M  KGL      +++    +CK ++    KE FR   +    P +
Sbjct: 203 FRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDV 262

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEN 149
            +FN+L+       + E A +  + +Q+ G+  D   ++ LI   +  GK+D   A    
Sbjct: 263 RSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLRE 322

Query: 150 VK-----PDRVVFNALITACGQSGAVDRAFDVLAEM------------------------ 180
           +K     PD V++  +I    ++G++  A  V  EM                        
Sbjct: 323 MKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHR 382

Query: 181 --NAEV-------HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
             +AE          V PD  T   L+      G  ++A +++  +    ++     Y  
Sbjct: 383 LLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNS 442

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            I+   + GD   A  ++DDM  + + P+ V  S LID     G+VE AF  L E  ++G
Sbjct: 443 LIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKG 502

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
               I++Y+S++     + N +K  +  + M    + P + T N LI      + +    
Sbjct: 503 NLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAF 562

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
            V + M+   + P+ +TY++++     + ++E    +  +    G+ P+           
Sbjct: 563 NVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFKKMGASGIEPD----------- 611

Query: 412 SRRYEKARTLNEHVLSFNS 430
             RY     +N HV + NS
Sbjct: 612 --RYTYMSLINGHVTAGNS 628



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 110/263 (41%), Gaps = 37/263 (14%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P   VF+ LI    QS     AF+    +     PV        AL+ A + AG    A 
Sbjct: 85  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVP--ASASNALLAALSRAGWPHLAE 142

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           E Y+++   + +       I ++   ++ +++ A +V  +M K+ V PD V  + LID  
Sbjct: 143 EAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDAR 202

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
             AG V+A                                   A+ L + M +  LKP +
Sbjct: 203 FRAGDVDA-----------------------------------AIALVDSMANKGLKPGI 227

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T N+++  LC   +  K  EV   M    + P+  +++IL+    R  +VE  +    +
Sbjct: 228 VTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKE 287

Query: 392 AKEDGVIPNLVMFKCIIGMCSRR 414
            ++ GV P++V F C+IG+ S R
Sbjct: 288 MQQRGVTPDVVSFSCLIGLFSTR 310



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 118/301 (39%), Gaps = 44/301 (14%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLS 93
           R G +SE + + ++M   G L     Y+     +CK  + +       ++      P L 
Sbjct: 344 RAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLC 403

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMFENV 150
           TF  L+       + E A Q+   +    L+ D   Y +LI    + G   K + +++++
Sbjct: 404 TFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDM 463

Query: 151 K-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-------------------- 185
                 P+ V ++ LI +  + G V+ AF  L EM ++ +                    
Sbjct: 464 HAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNV 523

Query: 186 -------------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
                         + PD IT   L+        +  A  V+ ++ K  ++     Y + 
Sbjct: 524 KKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMI 583

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           IN  S+ G+ E A  V+  M   G+ PD     +LI+    AG  + AF++  E  ++G 
Sbjct: 584 INGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGF 643

Query: 293 S 293
           +
Sbjct: 644 A 644


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 190/421 (45%), Gaps = 27/421 (6%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
           Y+   +++C+  K +KEA R    +      P + +++ ++       + + A +++  +
Sbjct: 261 YNIIIYSLCRLGK-VKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDM 319

Query: 119 QEAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAV 170
           Q  GLK +   Y ++I    K GK         + M + + PD VV+  LI    + G V
Sbjct: 320 QIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHV 379

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
             A     EM ++   + PD+IT   L++     G+V   + ++  +    +K     YT
Sbjct: 380 RTANKWFDEMLSK--KISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYT 437

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             I+   + G+   A S++++M + G+ P+ V   ALID     G+++ A E+L E + +
Sbjct: 438 TLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKK 497

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G+ + +  Y+S++     A N ++A++L + M+   + P   T   +I A C    + K 
Sbjct: 498 GLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKA 557

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
            ++L +M   GL P  +T+++L+        +E G  LL    E G++P+ + +  ++  
Sbjct: 558 HKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQ 617

Query: 411 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPT 458
              R     T   +    N G     N +  L            A  +Y+E I  G +PT
Sbjct: 618 HCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPT 677

Query: 459 V 459
           V
Sbjct: 678 V 678



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 144/313 (46%), Gaps = 10/313 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P   T+  L+ V   + +   AF +   + + G+  +   Y  LI    K G++D   E 
Sbjct: 431 PDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANEL 490

Query: 150 VKPDR--------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +   R         ++N+++    ++G +++A  ++ EM  EV  +DPD IT   ++ A 
Sbjct: 491 LDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM--EVAGIDPDAITYTTVIDAY 548

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G +D+A ++ + +    ++ T   + + +N     G  E    +   M +KG++PD 
Sbjct: 549 CRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDA 608

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + L+        +    +I +  +NQG++    +Y+ L+     A+N ++A  LY+ 
Sbjct: 609 ITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKE 668

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M      PTV++ NALI       +  +  E+  +M+  GL  +   Y+  +  C  + D
Sbjct: 669 MIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGD 728

Query: 382 VEVGLMLLSQAKE 394
           VE+ L L  +A E
Sbjct: 729 VEITLNLCDEAIE 741



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/438 (21%), Positives = 180/438 (41%), Gaps = 64/438 (14%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAFRFFKLVPNPTL 92
           G + + + L++DM+ KGL      Y++    +CK      ++K ++E     K++P+  +
Sbjct: 307 GELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQ-KIIPDNVV 365

Query: 93  ST-----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
            T     F  L  V  ++K  +             +  D   YTTLI    + GKV    
Sbjct: 366 YTTLIHGFFKLGHVRTANKWFDEMLS-------KKISPDYITYTTLIQGFGQGGKVIEPQ 418

Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
               + +   +KPD V +  LI    ++G +  AF +  EM      + P+ +T GAL+ 
Sbjct: 419 NLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQ--MGMTPNIVTYGALID 476

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G++D A E+   + K  ++    +Y   +N   + G+ E A  +  +M   G+ P
Sbjct: 477 GLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDP 536

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---------------- 303
           D +  + +ID     G ++ A ++LQE  ++G+   +++++ LM                
Sbjct: 537 DAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLL 596

Query: 304 ------GACSNAKNWQKALE-------------LYEHMKSIKLKPTVSTMNALITALCDG 344
                 G   +A  +   ++             +Y+ M++  + P  +T N LI   C  
Sbjct: 597 GWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKA 656

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
             L +   +  +M   G  P   +Y+ L+    +K        L  + +  G++ +  ++
Sbjct: 657 RNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIY 716

Query: 405 KCIIGMCSRRYEKARTLN 422
              + MC    +   TLN
Sbjct: 717 NFFVDMCYEEGDVEITLN 734



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 114/292 (39%), Gaps = 42/292 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L + G +    +LL++M +KGL            NVC                       
Sbjct: 478 LCKHGELDTANELLDEMRKKGLQ----------LNVC----------------------I 505

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--------M 146
           +N +++    + + E A ++++ ++ AG+  D   YTT+I    + G +D         +
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              ++P  V FN L+      G ++    +L  M  +   + PD IT   LMK       
Sbjct: 566 DRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEK--GIVPDAITYNTLMKQHCIRNS 623

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           ++   ++YK +    +      Y I I    +  + + A  +Y +M +KG +P     +A
Sbjct: 624 MNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNA 683

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           LI       K   A E+ +E +  G+      Y+  +  C    + +  L L
Sbjct: 684 LIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNL 735



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 108/241 (44%), Gaps = 21/241 (8%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHA-------RFFNVCKSQKAIKEAFRFFK 85
           N + + G I + I L+++ME  G+ D D + +        R  ++ K+ K ++E      
Sbjct: 511 NGICKAGNIEQAIKLMKEMEVAGI-DPDAITYTTVIDAYCRLGDIDKAHKLLQE---MLD 566

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSG--- 141
               PT+ TFN+LM+        E   ++L  + E G+  D   Y TL+   C ++    
Sbjct: 567 RGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNT 626

Query: 142 --KVDAMFEN--VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
             K+     N  V PD   +N LI    ++  +  A+ +  EM  + +   P   +  AL
Sbjct: 627 TTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYV--PTVTSYNAL 684

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +K      +   ARE+++ +  + +    E+Y   ++ C + GD E   ++ D+  +K +
Sbjct: 685 IKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEKCL 744

Query: 258 I 258
           +
Sbjct: 745 L 745



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 89/201 (44%), Gaps = 13/201 (6%)

Query: 214 YKMIHKYNIKG-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALI 268
           +++I+ Y   G  P  + I      + G    A  + D +   G++        FLS + 
Sbjct: 177 HRLIYTYKYWGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRI- 235

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
             A ++  +E A ++  E    GIS    SY+ ++ +       ++A  L   M      
Sbjct: 236 --ANNSEGIEMAIKVFCE---YGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSST 290

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLM 387
           P V + + +I   C   +L K ++++ DM+  GL PN  TY SI+L+ C+     E    
Sbjct: 291 PDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAE-K 349

Query: 388 LLSQAKEDGVIPNLVMFKCII 408
           +L +     +IP+ V++  +I
Sbjct: 350 VLREMMSQKIIPDNVVYTTLI 370


>gi|414587116|tpg|DAA37687.1| TPA: hypothetical protein ZEAMMB73_054845 [Zea mays]
          Length = 106

 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 79/103 (76%)

Query: 445 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
           MVYREA+ AG +P+ +V+S+VLGCL+LP+ + ++   +EN+GVS D  +  N+ SL +GF
Sbjct: 1   MVYREAVSAGLLPSSDVLSQVLGCLRLPHGSSLKSTFIENMGVSCDIPQYPNINSLFEGF 60

Query: 505 GEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 547
           GEYD RAFS+LEEAAS G V  +S KE  +V+DARKL+I TA+
Sbjct: 61  GEYDIRAFSILEEAASLGAVASISIKETRIVIDARKLKIFTAE 103


>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial [Vitis vinifera]
 gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 166/352 (47%), Gaps = 15/352 (4%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLST 94
           GR  E   + E+++  GL+   + Y+A      K+  ++K+A      +     +P   T
Sbjct: 305 GRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKT-GSLKDAESIVSEMERSGFSPDEHT 363

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------ 148
           +++L+   A++   E A  VL+ ++ +G++ +  +++ ++ +    GK    F+      
Sbjct: 364 YSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMR 423

Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              V PDR  +N +I   G+   +D A      M  E   V PD +T   L+     +G 
Sbjct: 424 NSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRME--GVQPDAVTWNTLIDCHCKSGH 481

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            ++A E+++ + +         Y I IN   +   WE   ++   M  +G++ + V  + 
Sbjct: 482 HNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTT 541

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           L+D  G +G+ + A E L+  K+ G+      Y++L+ A +     ++A+  +  M++  
Sbjct: 542 LVDIYGQSGRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADG 601

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           LKP+V  +N+LI A  +  +  +   VL  MK   L P+ +TY+ L+ A  R
Sbjct: 602 LKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIR 653



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 145/320 (45%), Gaps = 10/320 (3%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENVK-----PDR 154
           A S D   A   L +VQ  GL         +IT    +G+ +   A+FE +K     P  
Sbjct: 267 AKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRT 326

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
             +NAL+    ++G++  A  +++EM  E     PD  T   L+ A ANAG+ + AR V 
Sbjct: 327 RAYNALLKGYVKTGSLKDAESIVSEM--ERSGFSPDEHTYSLLIDAYANAGRWESARIVL 384

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           K +    ++    V++  +      G W+ +  V  +M   GV PD  F + +ID  G  
Sbjct: 385 KEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKC 444

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
             ++ A       + +G+    +++++L+     + +  KA EL+E M+     P  +T 
Sbjct: 445 NCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTY 504

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N +I +  + ++      +L  M+S GL  N +TY+ L+    +    +  +  L   K 
Sbjct: 505 NIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECLEVMKS 564

Query: 395 DGVIPNLVMFKCIIGMCSRR 414
            G+ P+  M+  +I   ++R
Sbjct: 565 VGLKPSSTMYNALINAYAQR 584



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/340 (20%), Positives = 155/340 (45%), Gaps = 49/340 (14%)

Query: 81  FRFFKLVPNPTLS--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           +  F L    TL+  T+N L+  CA + D E A  ++  ++  G  +D   Y+ +I +  
Sbjct: 171 YEAFLLSQRQTLTPLTYNALIGACARNDDLEKALNLMSRMRRDGFPSDFVNYSFIIQSLT 230

Query: 139 KSGKVDA-----MFENVKPDRV-----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
           ++ K D+     ++  ++ D++     + N +I    +SG V+RA   LA +    + + 
Sbjct: 231 RTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQG--NGLS 288

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P   T+ A++ A  NAG+ + A                                    ++
Sbjct: 289 PKTATLVAVITALGNAGRTEEAE-----------------------------------AI 313

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           ++++ + G++P     +AL+      G ++ A  I+ E +  G S    +YS L+ A +N
Sbjct: 314 FEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYAN 373

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           A  W+ A  + + M++  ++P     + ++ +  D  +  K+ +VL +M++ G+ P+   
Sbjct: 374 AGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHF 433

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           Y++++    + + ++  L    + + +GV P+ V +  +I
Sbjct: 434 YNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTWNTLI 473


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 151/316 (47%), Gaps = 14/316 (4%)

Query: 70   VCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            +CK  KA+     F KL  +    P+L  +N L+     ++ +E A+ +   ++ AG   
Sbjct: 762  LCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTP 821

Query: 126  DCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVL 177
            D   Y   +    KSGK+        + +F   KP+ +  N +I    +S ++D+A D+ 
Sbjct: 822  DVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLY 881

Query: 178  AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
             ++ +      P   T G L+      G+++ A++ ++ +  Y       +Y I +N   
Sbjct: 882  YDLMS--GDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFG 939

Query: 238  QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
            + GD E AC ++  M K+G+ PD    S ++D     GKV+ A    +E K  G+   ++
Sbjct: 940  KQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLV 999

Query: 298  SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
             Y+ ++     ++  ++AL L++ M++  + P + T NALI  L     + +  ++  ++
Sbjct: 1000 CYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEEL 1059

Query: 358  KSLGLCPNTITYSILL 373
            +  GL PN  TY+ L+
Sbjct: 1060 QLKGLEPNVFTYNALI 1075



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 178/395 (45%), Gaps = 13/395 (3%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAF 81
           ++  L  +  L  +G + E    LE M + G +     Y      + KS   ++A+K   
Sbjct: 157 INTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYR 216

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R       P+L T++ LM      +D E    +L+ ++  GL+ +   +T  I    ++G
Sbjct: 217 RMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAG 276

Query: 142 KVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K+D  +  +K        PD V +  LI A   +G ++ A ++  +M A  H   PD +T
Sbjct: 277 KIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHK--PDRVT 334

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+   ++ G +D  +E +  +           +TI I+   + G  + A    D M 
Sbjct: 335 YITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMK 394

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           K+GV P+    + LI       +++ A E+    ++ G+     +Y   +     +    
Sbjct: 395 KQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESG 454

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA++ +E MK+  + P +   NA + +L +  +L +  E  + +K  GL P+ ITY+IL+
Sbjct: 455 KAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILM 514

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
               +   V+  + LLS+ +E+G  P +V+   +I
Sbjct: 515 RCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLI 549



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 174/407 (42%), Gaps = 27/407 (6%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC----KS 73
           +  +   L +Y+ L+    ++  I   + LL++ME  GL     +Y    F +C      
Sbjct: 220 SEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGL--RPNIYT---FTICIRILGR 274

Query: 74  QKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
              I EA+   K + +    P + T+ +L+    ++     A ++   ++ +  K D   
Sbjct: 275 AGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVT 334

Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y TL+   +  G +DA+ E           PD V F  LI A  + G VD AF  L  M 
Sbjct: 335 YITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMK 394

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
            +   V P+  T   L+       ++D A E++  +    ++ T   Y + I+   ++G+
Sbjct: 395 KQ--GVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGE 452

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
              A   ++ M   G++P+ V  +A +      G++E A E     K  G++   I+Y+ 
Sbjct: 453 SGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNI 512

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           LM     A     A++L   M+     P V  +N+LI  L   D++ +  ++   MK + 
Sbjct: 513 LMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMK 572

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L P  +TY+ LL    ++  V+    L      D   PN + F  ++
Sbjct: 573 LAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLL 619



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/313 (20%), Positives = 141/313 (45%), Gaps = 10/313 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + TF +L+         + AF  L ++++ G+  +   Y TLI    +  ++D   E 
Sbjct: 365 PDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALEL 424

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   ++     +   I   G+SG   +A     +M  + + + P+ +   A + + 
Sbjct: 425 FNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKM--KTNGIVPNIVACNASLYSL 482

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A  G+++ A+E +  + K  +      Y I + C  + G  + A  +  +M + G  P+ 
Sbjct: 483 AEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEV 542

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V +++LID    A +V+ A+++ Q  K   ++  +++Y++L+         Q+A  L++ 
Sbjct: 543 VIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKG 602

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M +    P   + N L+  LC   ++   +++L  M  +   P+ +TY+ ++    +++ 
Sbjct: 603 MIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENR 662

Query: 382 VEVGLMLLSQAKE 394
           V     L  Q K+
Sbjct: 663 VNYAFWLFHQMKK 675



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 101/468 (21%), Positives = 175/468 (37%), Gaps = 94/468 (20%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKG--------------LLDMDKVYHA-RFFNVC 71
           +YN L+R     GR+ + I LL +ME  G              L   D+V  A + F   
Sbjct: 509 TYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRM 568

Query: 72  KSQKA-------------------IKEAFRFFK-LVPN---PTLSTFNMLMSVCASSKDS 108
           K  K                    ++EA   FK ++ +   P   +FN L+     + + 
Sbjct: 569 KEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEV 628

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-------ENVKPDRVVFNALI 161
           + A ++L  + E     D   Y T+I    K  +V+  F       + + PD V    L+
Sbjct: 629 DLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKVIYPDYVTLCTLL 688

Query: 162 TACGQSGAVDRAFDVLAEMNAEVHPV---------------------------------- 187
               + G ++ AF V  E    VH V                                  
Sbjct: 689 PGVIKDGRIEDAFRVAKEF---VHHVGDHADGSFWEDLMGGILIEAEIGQSILFAESLVC 745

Query: 188 ----DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
               + D + I  +   C +   VD      K+   + I  + E Y   I+   +    E
Sbjct: 746 NTICEDDSVLIPLVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTE 805

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  ++  M   G  PD    +  +D  G +GK++  F++ +E   +G     I+++ ++
Sbjct: 806 MAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVI 865

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                + +  KA++LY  + S    PT  T   LI  L    +L +  +   +M   G  
Sbjct: 866 FGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCM 925

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL----VMFKCI 407
           PN   Y+IL+    ++ DVE    L  +  ++G+ P+L    +M  C+
Sbjct: 926 PNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCL 973



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 135/329 (41%), Gaps = 40/329 (12%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAI 77
           V+  LH+YN LI    R  R+ E ++L   ME  GL      Y      +    +S KAI
Sbjct: 398 VAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAI 457

Query: 78  K--EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           K  E  +   +VPN         +  C +S         L  + E G   + K +   + 
Sbjct: 458 KTFEKMKTNGIVPN---------IVACNAS---------LYSLAEQGRLEEAKEFFNGLK 499

Query: 136 TCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            C            + PD + +N L+   G++G VD A  +L+EM  E +  DP+ + I 
Sbjct: 500 KCG-----------LAPDAITYNILMRCYGKAGRVDDAIKLLSEM--EENGCDPEVVIIN 546

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+     A +VD A ++++ + +  +  T   Y   +    + G  + A +++  M   
Sbjct: 547 SLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIAD 606

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
              P+ +  + L+D     G+V+ A ++L           +++Y++++           A
Sbjct: 607 DCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYA 666

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDG 344
             L+  MK +     V+    L   + DG
Sbjct: 667 FWLFHQMKKVIYPDYVTLCTLLPGVIKDG 695



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 119/290 (41%), Gaps = 48/290 (16%)

Query: 17   KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-- 74
            K+A    DV       + L + G+I E  DL E+M  +G       ++   F + KS   
Sbjct: 815  KNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLVKSNSL 874

Query: 75   -KAI-------------------------------KEAFRFFKLVPN----PTLSTFNML 98
             KAI                               +EA +FF+ + +    P    +N+L
Sbjct: 875  DKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNIL 934

Query: 99   MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENVK---- 151
            M+      D E A ++ R + + G++ D K Y+ ++      GKVD     FE +K    
Sbjct: 935  MNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGL 994

Query: 152  -PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
             PD V +N +I   G+S  V+ A  +  EM      + PD  T  AL+     AG V+ A
Sbjct: 995  DPDLVCYNLMINGLGRSQRVEEALSLFDEMRN--RGITPDLYTYNALILNLGIAGMVEEA 1052

Query: 211  REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             ++Y+ +    ++     Y   I   S +G+ + A +VY  M   G  P+
Sbjct: 1053 GKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPN 1102



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 4/202 (1%)

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
           F+ +AEM   +H  +    T   +++      +V+    V+ ++ K  IK +   Y    
Sbjct: 109 FNSVAEMPRVIHTTE----TCNYVLEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYLTIF 164

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
                 G    A    + M K G + +      LI     +G    A ++ +   ++GI 
Sbjct: 165 KVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIK 224

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
             + +YS+LM A    ++ +  + L + M+S+ L+P + T    I  L    ++ +   +
Sbjct: 225 PSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGI 284

Query: 354 LSDMKSLGLCPNTITYSILLVA 375
           L  M   G  P+ +TY++L+ A
Sbjct: 285 LKRMDDAGCGPDVVTYTVLIDA 306



 Score = 39.3 bits (90), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 59/138 (42%)

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           +VE    +    + Q I   I +Y ++          ++A    E M+ +       +  
Sbjct: 137 RVEDMVVVFNLMQKQIIKRSINTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYI 196

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI  L       + ++V   M S G+ P+  TYS L+VA  ++ D+E  + LL + +  
Sbjct: 197 GLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGKRRDIETVMGLLQEMESL 256

Query: 396 GVIPNLVMFKCIIGMCSR 413
           G+ PN+  F   I +  R
Sbjct: 257 GLRPNIYTFTICIRILGR 274


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 152/324 (46%), Gaps = 30/324 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P  + FN L++    S       Q  R   E+ +K D  +Y+                  
Sbjct: 127 PGSNCFNNLLTFVVGSSSFN---QWWRFFNESKIKVDLDVYS------------------ 165

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
                  F  +I  C ++G ++++FD+L E+        P+ +    L+  C   G++++
Sbjct: 166 -------FGIVIKGCCEAGEIEKSFDLLVELRE--FGFSPNVVIYTTLIDGCCKRGEIEK 216

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A++++  + K+ +      YT+ I+   + G  +    +Y+ M + GV P+    + +++
Sbjct: 217 AKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMN 276

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G+ + AF++  E + +G+S  I++Y++L+G         +A ++ + MKS  + P
Sbjct: 277 QHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINP 336

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            + T N LI   C   +L K + +  D+KS GL P+ +TY+IL+    +K D      ++
Sbjct: 337 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVV 396

Query: 390 SQAKEDGVIPNLVMFKCIIGMCSR 413
            + +E G+ P+ + +  +I   +R
Sbjct: 397 KEMEERGIKPSKITYTILIDTFAR 420



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/432 (20%), Positives = 176/432 (40%), Gaps = 50/432 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVPN 89
           N  ++   +   I    +M  KG +     ++     V  S  +  + +RFF   K+  +
Sbjct: 102 NAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSS-SFNQWWRFFNESKIKVD 160

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DA 145
             + +F +++  C  + + E +F +L  ++E G   +  +YTTLI  C K G++    D 
Sbjct: 161 LDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDL 220

Query: 146 MFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            FE  K     +   +  LI    ++G   + F++  +M  +   V P+  T   +M   
Sbjct: 221 FFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQED--GVFPNLYTYNCVMNQH 278

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+   A +++  + +  +      Y   I    +      A  V D M   G+ P+ 
Sbjct: 279 CKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNL 338

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK---------- 310
           +  + LID     GK+  A  + ++ K++G+S  +++Y+ L+ G C              
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKE 398

Query: 311 ------------------------NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
                                   N +KA++L   M+ + L P V T + LI   C   Q
Sbjct: 399 MEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQ 458

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           + +   +   M +  L PN + Y+ +++   ++      L L  + +E  + PN+  ++ 
Sbjct: 459 MNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRY 518

Query: 407 IIG-MCSRRYEK 417
           +I  +C  R  K
Sbjct: 519 MIEVLCKERKSK 530



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 159/365 (43%), Gaps = 28/365 (7%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVY----HARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           ++G I +  DL  +M + GL+  +  Y    H  F N  K     K+ F  ++ +     
Sbjct: 210 KRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIK-----KQGFEMYEKMQEDGV 264

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------ 142
            P L T+N +M+       ++ AF++   ++E G+  +   Y TLI    +  K      
Sbjct: 265 FPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANK 324

Query: 143 -VDAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            +D M  + + P+ + +N LI      G + +A  +  ++ +    + P  +T   L+  
Sbjct: 325 VMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKS--RGLSPSLVTYNILVSG 382

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G    A +V K + +  IK +   YTI I+  ++  + E A  +   M + G+ PD
Sbjct: 383 FCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPMEELGLTPD 442

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL-MGACSNAKNWQKALELY 319
               S LI      G++  A  + +    + +    + Y+++ +G C    ++ +AL L+
Sbjct: 443 VHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSY-RALRLF 501

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M+  +L P V++   +I  LC   +  +   ++  M   G+ P+    SIL +    K
Sbjct: 502 REMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKMIDTGIDPSD---SILNLISRAK 558

Query: 380 DDVEV 384
           +D  V
Sbjct: 559 NDSHV 563



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 77/364 (21%), Positives = 152/364 (41%), Gaps = 19/364 (5%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-----LVPNPTLS 93
           G I +  DLL ++   G      +Y       CK  +  K    FF+     LV N    
Sbjct: 177 GEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEW-- 234

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           T+ +L+     +   +  F++   +QE G+  +   Y  ++    K G+    F+     
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEM 294

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               V  + V +N LI    +    + A  V+ +M ++   ++P+ IT   L+      G
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSD--GINPNLITYNTLIDGFCGVG 352

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++ +A  + + +    +  +   Y I ++   + GD   A  V  +M ++G+ P ++  +
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYT 412

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LID       +E A ++    +  G++  + +YS L+          +A  L++ M + 
Sbjct: 413 ILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAK 472

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VAC-ERKDDVE 383
           KL+P     N ++   C      + + +  +M+   L PN  +Y  ++ V C ERK    
Sbjct: 473 KLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEA 532

Query: 384 VGLM 387
            GL+
Sbjct: 533 EGLV 536



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 130/305 (42%), Gaps = 27/305 (8%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   L++YN ++ Q    GR  +   L ++M  +G+      Y+     +C+  KA  EA
Sbjct: 264 VFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKA-NEA 322

Query: 81  FRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            +    +     NP L T+N L+   C   K  + A  + R ++  GL      Y  L++
Sbjct: 323 NKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGK-ALSLCRDLKSRGLSPSLVTYNILVS 381

Query: 136 TCAKSGK-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K G        V  M E  +KP ++ +  LI    +   +++A  + + M  E   +
Sbjct: 382 GFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQLRSPM--EELGL 439

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY-TIAINCCSQTGDWEFAC 246
            PD  T   L+      GQ++ A  ++K++    ++    +Y T+ +  C +   +  A 
Sbjct: 440 TPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYR-AL 498

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            ++ +M +K + P+      +I+      K + A  ++++     I  GI    S++   
Sbjct: 499 RLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVEKM----IDTGIDPSDSILNLI 554

Query: 307 SNAKN 311
           S AKN
Sbjct: 555 SRAKN 559


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 185/419 (44%), Gaps = 21/419 (5%)

Query: 25  VSEQLHSYNRLIRQGRIS----ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S+    Y   +R G +     + IDL ++M R   L    V  +RFF+   S K     
Sbjct: 26  ISDGRVCYGERLRSGIVDIKEDDAIDLFQEMIRSRPLP-SLVDFSRFFSGVASTKQFNLV 84

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             F K +        + T N++++       +  A+ VL  V + G + D   + TLI  
Sbjct: 85  LDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLING 144

Query: 137 CAKSGKVDA-------MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
                KV         M EN  +P+ V +N+++    +SG    A D+L +M+     V 
Sbjct: 145 LCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDE--RNVK 202

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
            D  T   ++ +    G +D A  ++K +    IK +   Y   +    + G W     +
Sbjct: 203 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQL 262

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
             DMT + +IP+ +  + LID     GK++ A E+ +E   +GIS   I+Y+SLM     
Sbjct: 263 LKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCM 322

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                +A  + + M      P + T  +LI   C   ++ + M++   +   GL  NT+T
Sbjct: 323 QNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVT 382

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
           YSIL+    +   +E+   L  +    GV+P+++ +  ++ G+C   + EKA  + E +
Sbjct: 383 YSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDL 441



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 175/402 (43%), Gaps = 44/402 (10%)

Query: 20  NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---- 75
           N   DV       + L R G I   I L ++ME KG+      Y++    +CK+ K    
Sbjct: 200 NVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDG 259

Query: 76  -AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
             + +     K++PN  + TFN+L+ V                V+E  L+   +LY  +I
Sbjct: 260 VQLLKDMTSRKIIPN--VITFNVLIDV---------------FVKEGKLQEANELYKEMI 302

Query: 135 TTCAKSGKVDAMFENVKPDRVVFNALITA-CGQS--GAVDRAFDVLAEMNAEVHPVDPDH 191
           T            + + P+ + +N+L+   C Q+     +   D++   N       PD 
Sbjct: 303 T------------KGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCS-----PDI 345

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T  +L+K      +VD   ++++ I K  +      Y+I +    Q+G  E A  ++ +
Sbjct: 346 VTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQE 405

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK 310
           M   GV+PD +    L+D     GK+E A EI ++ +   +++ I+ Y+ ++ G C   K
Sbjct: 406 MVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGK 465

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             + A  L+  +    +KP V T   +I+ LC    L +   +L  M+  G  PN  TY+
Sbjct: 466 -VEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDCTYN 524

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
            L+ A  R  D+     L+ + K  G   +    K +I M S
Sbjct: 525 TLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLS 566



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 167/358 (46%), Gaps = 18/358 (5%)

Query: 70  VCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           +C   K  +      ++V N   P + T+N +++    S D+  A  +LR + E  +KAD
Sbjct: 145 LCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKAD 204

Query: 127 CKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLA 178
              Y+T+I +  + G +DA          + +K   V +N+L+    ++G  +    +L 
Sbjct: 205 VFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLK 264

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCS 237
           +M +    + P+ IT   L+      G++  A E+YK MI K     T    ++    C 
Sbjct: 265 DMTS--RKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCM 322

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           Q    E A ++ D M +    PD V  ++LI       +V+   ++ ++   +G+    +
Sbjct: 323 QNRLSE-ANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTV 381

Query: 298 SYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           +YS L+ G C + K  + A EL++ M S+ + P V T   L+  LCD  +L K +E+  D
Sbjct: 382 TYSILVQGFCQSGK-LEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFED 440

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           ++   +  + + Y+I++    +   VE    L       GV PN++ +  +I G+C +
Sbjct: 441 LQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKK 498



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 125/288 (43%), Gaps = 20/288 (6%)

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           +PD  T   L+       +V  A  +   + +   +     Y   +N   ++GD   A  
Sbjct: 132 EPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALD 191

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +   M ++ V  D    S +ID     G ++AA  + +E + +GI   +++Y+SL+G   
Sbjct: 192 LLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLC 251

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            A  W   ++L + M S K+ P V T N LI       +L +  E+  +M + G+ PNTI
Sbjct: 252 KAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTI 311

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 427
           TY+ L+     ++ +     +L     +   P++V F  +I    + Y K + ++E +  
Sbjct: 312 TYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLI----KGYCKVKRVDEGMKL 367

Query: 428 FN--SGRPQIENKWT--------------SLALMVYREAIVAGTIPTV 459
           F   S R  + N  T               +A  +++E +  G +P V
Sbjct: 368 FRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDV 415



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 61/292 (20%), Positives = 127/292 (43%), Gaps = 15/292 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
            +++G++ E  +L ++M  KG+      Y++     C  Q  + EA     L+     +P
Sbjct: 285 FVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCM-QNRLSEANNMLDLMVRNNCSP 343

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            + TF  L+      K  +   ++ R + + GL A+   Y+ L+    +SGK++   E  
Sbjct: 344 DIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELF 403

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  V PD + +  L+     +G +++A ++  ++      +D    TI  +++   
Sbjct: 404 QEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTI--IIEGMC 461

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G+V+ A  ++  +    +K     YT+ I+   + G    A  +   M + G  P++ 
Sbjct: 462 KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDC 521

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
             + LI      G + A+ ++++E K+ G S    S   ++   S+A  W K
Sbjct: 522 TYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLSSAVWWFK 573



 Score = 45.8 bits (107), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 76/170 (44%), Gaps = 7/170 (4%)

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           +F C++   ++   V   E   S ++D      K + A ++ QE         ++ +S  
Sbjct: 18  DFLCTI-SGISDGRVCYGERLRSGIVDI-----KEDDAIDLFQEMIRSRPLPSLVDFSRF 71

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
               ++ K +   L+  + M+   +   + T+N +I   C   +      VL  +  LG 
Sbjct: 72  FSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGY 131

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            P+T T++ L+     +  V   ++L+++  E+G  PN+V +  I+ G+C
Sbjct: 132 EPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGIC 181


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 155/332 (46%), Gaps = 13/332 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T N+++     + D+E A  ++  +   GLK     Y +++    +SG  D  +E 
Sbjct: 189 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 248

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V PD   F  LI    + G ++ A  +  EM      + PD ++   L+   
Sbjct: 249 FKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR--GIKPDLVSFSCLIGLF 306

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A  G++D A    + +  + +     +YT+ I    + G    A  V D+M   G +PD 
Sbjct: 307 ARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDV 366

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
           V  + L++      ++  A  +L E + +G+   + ++++L+ G C   K   KAL+L++
Sbjct: 367 VTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGK-LDKALQLFD 425

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M + +L+P + T N LI  +C    L K  ++  DM S  + PN +TYSIL+ +   K 
Sbjct: 426 TMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKG 485

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            VE     L +    G++PN++ +  II G C
Sbjct: 486 QVEDAFGFLDEMINKGILPNIMTYNSIIKGYC 517



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 178/408 (43%), Gaps = 28/408 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L R G   +  ++ ++M+  G+    + +       C+  + I+EA + +K + +    P
Sbjct: 236 LCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE-IEEALKIYKEMRHRGIKP 294

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            L +F+ L+ + A     + A   LR ++  GL  D  +YT +I    ++G +       
Sbjct: 295 DLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVR 354

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                    PD V +N L+    +   +  A  +L EM     P  PD  T   L+    
Sbjct: 355 DEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVP--PDLCTFTTLIHGYC 412

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G++D+A +++  +    ++     Y   I+   + GD + A  ++DDM  + + P+ V
Sbjct: 413 IEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHV 472

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             S LID     G+VE AF  L E  N+GI   I++Y+S++     + N  K  +  + M
Sbjct: 473 TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 532

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
              K+ P + T N LI      D++    ++L+ M+   + P+ +TY++L+       +V
Sbjct: 533 MVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNV 592

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS 430
           +    +  +    G+ P+             RY     +N HV + NS
Sbjct: 593 QEAGWIFEKMCAKGIEPD-------------RYTYMSMINGHVTAGNS 627



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 166/407 (40%), Gaps = 30/407 (7%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNML 98
           GR SEC  LL  M R+                C+ +             P P    F++L
Sbjct: 50  GRASECQSLLLRMSRRR-------------GACRREIVSS----LLGSSPTPQPRVFDLL 92

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDA----MFENV 150
           +     S+    AF+  RL+ +  +         L+   +++G      DA       N 
Sbjct: 93  IRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAADAYRLVFSSNS 152

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           + +    N ++    ++   D+   V++EM  E   V PD +T   ++ A   AG  + A
Sbjct: 153 EVNTYTLNIMVHNYCKALEFDKVDAVISEM--EKRCVFPDVVTHNVMVDARFRAGDAEAA 210

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
             +   +    +K     Y   +    ++G W+ A  V+ +M   GV PD    + LI  
Sbjct: 211 MALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGG 270

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G++E A +I +E +++GI   ++S+S L+G  +       A+     M+   L P 
Sbjct: 271 FCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPD 330

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
                 +I   C    +   + V  +M   G  P+ +TY+ LL    ++  +     LL+
Sbjct: 331 GVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLN 390

Query: 391 QAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQI 435
           + +E GV P+L  F  +I G C   + +KA  L + +L+    RP I
Sbjct: 391 EMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLN-QRLRPDI 436



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 146/344 (42%), Gaps = 21/344 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R+G++   +  L +M   GL+    +Y       C++   + +A R    +      P +
Sbjct: 308 RRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRA-GLMSDALRVRDEMVGCGCLPDV 366

Query: 93  STFNMLMS-VCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
            T+N L++ +C   +  D+EG    +R   E G+  D   +TTLI      GK+D   + 
Sbjct: 367 VTYNTLLNGLCKERRLLDAEGLLNEMR---ERGVPPDLCTFTTLIHGYCIEGKLDKALQL 423

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   ++PD V +N LI    + G +D+A D+  +M++    + P+H+T   L+ + 
Sbjct: 424 FDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSR--EIFPNHVTYSILIDSH 481

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              GQV+ A      +    I      Y   I    ++G+          M    V PD 
Sbjct: 482 CEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDL 541

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + LI       K+  AF++L   + + +   +++Y+ L+   S   N Q+A  ++E 
Sbjct: 542 ITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEK 601

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           M +  ++P   T  ++I          +  ++  +M   G  P+
Sbjct: 602 MCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 119/273 (43%), Gaps = 15/273 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++ R+ +   LL +M  +G+      +       C   K + +A + F  + N   
Sbjct: 374 NGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGK-LDKALQLFDTMLNQRL 432

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            P + T+N L+       D + A  +   +    +  +   Y+ LI +  + G+V+  F 
Sbjct: 433 RPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFG 492

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                  + + P+ + +N++I    +SG V +    L +M   V+ V PD IT   L+  
Sbjct: 493 FLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM--MVNKVSPDLITYNTLIHG 550

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                ++  A ++  M+ K  ++     Y + IN  S  G+ + A  +++ M  KG+ PD
Sbjct: 551 YIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPD 610

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
                ++I+    AG  + AF++  E   +G +
Sbjct: 611 RYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFA 643



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 46/245 (18%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    RQG + +  DL +DM            H+R            E F     
Sbjct: 438 TYNTLIDGMCRQGDLDKANDLWDDM------------HSR------------EIF----- 468

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA- 145
              P   T+++L+         E AF  L  +   G+  +   Y ++I    +SG V   
Sbjct: 469 ---PNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKG 525

Query: 146 -------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                  M   V PD + +N LI    +   +  AF +L  M  E   V PD +T   L+
Sbjct: 526 QKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKE--KVQPDVVTYNMLI 583

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              +  G V  A  +++ +    I+     Y   IN     G+ + A  ++D+M ++G  
Sbjct: 584 NGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFA 643

Query: 259 PDEVF 263
           PD+ F
Sbjct: 644 PDDKF 648


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 176/389 (45%), Gaps = 19/389 (4%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-- 75
           A  VS  L ++N+L+R    +G + EC  LL+ + ++G+L     Y+     +C+  +  
Sbjct: 209 ASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELD 268

Query: 76  -AIKEAFRFFKLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            A++      +  P P + T+N ++  +C +SK  E    + ++V E GL+ D   Y TL
Sbjct: 269 GAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNE-GLEPDSYTYNTL 327

Query: 134 ITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I    K G V        DA+F    PD+  + +LI      G  +RA  +  E  A   
Sbjct: 328 IAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNE--ALGK 385

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + P+ I    L+K  +N G +  A ++   + +  +    + + I +N   + G    A
Sbjct: 386 GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +   M  KG  PD    + LI       K+E A EIL    + G+   + +Y+SL+  
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNG 505

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
                 ++  +E Y+ M      P + T N L+ +LC   +L + + +L +MK+  + P+
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPD 565

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKE 394
            +T+  L+    +  D++    L  + +E
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 160/377 (42%), Gaps = 34/377 (9%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           + ++I   G  G  +   +VL +M   V     + + +GA MK     G+V  A  V++ 
Sbjct: 43  YRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGA-MKNYGRKGKVQEAVNVFER 101

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           +  Y+ + T   Y   ++    +G ++ A  VY  M  +G+ PD    +  +       +
Sbjct: 102 MDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSR 161

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
             AA  +L    +QG  + +++Y +++G         +  EL+  M +  +   +ST N 
Sbjct: 162 PHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNK 221

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           L+  LC    + +  ++L  +   G+ PN  TY++ +    ++ +++  + ++    E G
Sbjct: 222 LLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQG 281

Query: 397 VIPNLVMFKCII-GMC--SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVA 453
             P+++ +  +I G+C  S+  E    L + V   N G       + +L         +A
Sbjct: 282 PKPDVITYNNLIYGLCKNSKFQEAEVYLGKMV---NEGLEPDSYTYNTL---------IA 329

Query: 454 GTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPR 510
           G            G +QL       ER+V +   +     +    SLIDG    GE + R
Sbjct: 330 GYCKG--------GMVQLA------ERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETN-R 374

Query: 511 AFSLLEEAASFGIVPCV 527
           A +L  EA   GI P V
Sbjct: 375 ALALFNEALGKGIKPNV 391



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/401 (21%), Positives = 161/401 (40%), Gaps = 43/401 (10%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQK 75
           K   + H +S       +L   G+     ++L DM E  G   ++ VY     N  +  K
Sbjct: 32  KEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGK 91

Query: 76  AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            ++EA   F+ +      PT+ ++N +MSV   S   + A +V   +++ G+  D   +T
Sbjct: 92  -VQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFT 150

Query: 132 TLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
             + +  K+ +  A        R++ N     C              EMN   +      
Sbjct: 151 IRMKSFCKTSRPHAAL------RLLNNMSSQGC--------------EMNVVAYCT---- 186

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSV 248
             +G   +    A       E Y++  K    G       +   +    + GD +    +
Sbjct: 187 -VVGGFYEENFKA-------EGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKL 238

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS 307
            D + K+GV+P+    +  I      G+++ A  ++     QG    +I+Y++L+ G C 
Sbjct: 239 LDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCK 298

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
           N+K +Q+A      M +  L+P   T N LI   C G  +     ++ D    G  P+  
Sbjct: 299 NSK-FQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQF 357

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           TY  L+     + +    L L ++A   G+ PN++++  +I
Sbjct: 358 TYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI 398



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 83/385 (21%), Positives = 160/385 (41%), Gaps = 30/385 (7%)

Query: 100 SVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAM-------FENVK 151
           +V    KD   A ++   + +E G K     Y ++I      GK +AM        ENV 
Sbjct: 12  AVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVG 71

Query: 152 PDRV--VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
              +  V+   +   G+ G V  A +V   M  + +  +P   +  A+M    ++G  D+
Sbjct: 72  NHMLEGVYVGAMKNYGRKGKVQEAVNVFERM--DFYDCEPTVFSYNAIMSVLVDSGYFDQ 129

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCS--QTGDWEFACSVYDDMTKKGVIPDEV-FLSA 266
           A +VY  +    I  TP+VY+  I   S  +T     A  + ++M+ +G   + V + + 
Sbjct: 130 AHKVYMRMRDRGI--TPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTV 187

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           +  F     K E  +E+  +    G+S+ + +++ L+       + ++  +L + +    
Sbjct: 188 VGGFYEENFKAEG-YELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRG 246

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           + P + T N  I  LC   +L   + ++  +   G  P+ ITY+ L+    +    +   
Sbjct: 247 VLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAE 306

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMC-------SRRYEKARTLNEHVLSFNSGRPQIEN- 437
           + L +   +G+ P+   +  +I G C       + R       N  V    + R  I+  
Sbjct: 307 VYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGL 366

Query: 438 ---KWTSLALMVYREAIVAGTIPTV 459
                T+ AL ++ EA+  G  P V
Sbjct: 367 CHEGETNRALALFNEALGKGIKPNV 391



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 108/270 (40%), Gaps = 51/270 (18%)

Query: 186 PVDPDHITIGALMKACANAGQVD--RAREVYKMIHK-YNIKGTPEVYTIAINCCSQTGDW 242
           P+ P H+T  A++K      Q D  +A E++  + K    K T   Y   I      G +
Sbjct: 4   PLLPKHVT--AVIKC-----QKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKF 56

Query: 243 EFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
           E    V  DM +     + + V++ A+ ++ G  GKV+ A  + +          + SY+
Sbjct: 57  EAMEEVLVDMRENVGNHMLEGVYVGAMKNY-GRKGKVQEAVNVFERMDFYDCEPTVFSYN 115

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           ++M    ++  + +A ++Y  M+   + P V +    + + C   +    + +L++M S 
Sbjct: 116 AIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQ 175

Query: 361 GLCPNTITY------------------------------------SILLVACERKDDVEV 384
           G   N + Y                                     +L V C +K DV+ 
Sbjct: 176 GCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLC-KKGDVKE 234

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
              LL +  + GV+PNL  +   I G+C R
Sbjct: 235 CEKLLDKVIKRGVLPNLFTYNLFIQGLCQR 264


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 178/386 (46%), Gaps = 15/386 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK---SQKAIKEAFRFFKLVPNP 90
           L  +G+I + +   + +   G   ++KV +    N +CK   +  A++   R    +  P
Sbjct: 136 LCLKGQIHQALHFHDKVVALGF-HLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQP 194

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMF 147
            +  +N ++      K    AF +   +   G+  D   Y+ LI+     GK++    +F
Sbjct: 195 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLF 254

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                E + PD   F+ L+    + G V  A +VLA M  +   + PD +T  +LM    
Sbjct: 255 NKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQ--GIKPDVVTYCSLMDGYC 312

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              QV++A+ ++  + +  +    + Y I IN   +    + A +++ +M  K +IPD V
Sbjct: 313 LVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVV 372

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             ++LID    +GK+  A +++ E  ++G+    I+Y+S++ A        KA+ L   M
Sbjct: 373 TYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM 432

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           K   ++P + T   LI  LC G +L     +  D+   G      TY++++      D  
Sbjct: 433 KDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLF 492

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII 408
           +  L LLS+ +++G IPN   ++ II
Sbjct: 493 DKALALLSKMEDNGCIPNAKTYEIII 518



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 119/277 (42%), Gaps = 4/277 (1%)

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
           F  +  D V FN LI    Q G    +F V A +  + +  +P+ IT+  L+K     GQ
Sbjct: 84  FNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGY--EPNAITLTTLIKGLCLKGQ 141

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           + +A   +  +           Y   IN   + G    A  +   +  K V P+ V  + 
Sbjct: 142 IHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNT 201

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           +ID       V  AF++  E  ++GIS  +++YS+L+           A+ L+  M S +
Sbjct: 202 IIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEE 261

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           + P V T + L+   C   ++ +   VL+ M   G+ P+ +TY  L+        V    
Sbjct: 262 INPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAK 321

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 421
            + +   + GV  N+  +  +I G C  ++ ++A  L
Sbjct: 322 SIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNL 358



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/333 (19%), Positives = 136/333 (40%), Gaps = 10/333 (3%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
           L TFN+L++  +    +  +F V   + + G + +    TTLI      G++        
Sbjct: 91  LVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHD 150

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                    ++V +  LI    + G    A  +L  ++ ++  V P+ +    ++ +   
Sbjct: 151 KVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKL--VQPNVVMYNTIIDSMCK 208

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
              V+ A ++Y  +    I      Y+  I+     G    A  +++ M  + + PD   
Sbjct: 209 VKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYT 268

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            S L+D     G+V+ A  +L     QGI   +++Y SLM      K   KA  ++  M 
Sbjct: 269 FSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMA 328

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              +   V + N +I   C   ++ + M +  +M    + P+ +TY+ L+    +   + 
Sbjct: 329 QGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKIS 388

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
             L L+ +  + GV  + + +  I+    + ++
Sbjct: 389 YALKLVDEMHDRGVPHDKITYNSILDALCKNHQ 421



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 151/349 (43%), Gaps = 55/349 (15%)

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID------------------- 269
           + I INC SQ G   F+ SV+ ++ KKG  P+ + L+ LI                    
Sbjct: 94  FNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVV 153

Query: 270 -FAGH---------------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
               H                G+  AA ++L+    + +   ++ Y++++ +    K   
Sbjct: 154 ALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVN 213

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A +LY  M S  + P V T +ALI+  C   +L   + + + M S  + P+  T+SIL+
Sbjct: 214 EAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILV 273

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL---------N 422
               ++  V+    +L+   + G+ P++V +  ++ G C  ++  KA+++          
Sbjct: 274 DGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVT 333

Query: 423 EHVLSFN---SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE 479
            +V S+N   +G  +I  K    A+ +++E      IP V   + ++  L          
Sbjct: 334 ANVQSYNIMINGFCKI--KKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYAL 391

Query: 480 RLVENL---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
           +LV+ +   GV  D +  +++   +    + D +A +LL +    GI P
Sbjct: 392 KLVDEMHDRGVPHDKITYNSILDALCKNHQVD-KAIALLTKMKDEGIQP 439



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 60/292 (20%), Positives = 132/292 (45%), Gaps = 23/292 (7%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           + +++  +++++ L+    ++GR+ E  ++L  M ++G+   D V +    +     K +
Sbjct: 259 SEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGI-KPDVVTYCSLMDGYCLVKQV 317

Query: 78  KEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A   F  +        + ++N++++     K  + A  + + +    +  D   Y +L
Sbjct: 318 NKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSL 377

Query: 134 ITTCAKSGK-------VDAMFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I    KSGK       VD M +   P D++ +N+++ A  ++  VD+A  +L +M  E  
Sbjct: 378 IDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDE-- 435

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYK--MIHKYNIKGTPEVYTIAINCCSQTGDWE 243
            + PD  T   L+      G++  A+ +++  ++  YNI  T   YT+ I        ++
Sbjct: 436 GIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNI--TVYTYTVMIQGFCDNDLFD 493

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
            A ++   M   G IP+      +I       + + A ++L+E   +G+  G
Sbjct: 494 KALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGLLFG 545


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 167/376 (44%), Gaps = 23/376 (6%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D   F  +I  C ++G   + F +LA +  E   + P+ +    L+  C   G V  A+ 
Sbjct: 157 DAYSFGIMIKGCCEAGYFVKGFRLLAML--EEFGLSPNVVIYTTLIDGCCKYGNVMLAKN 214

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           ++  + +  +   P  Y++ +N   + G       +Y++M + G++P+    + LI    
Sbjct: 215 LFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYC 274

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
           + G V+ AF++  E + +GI+ G+++Y+ L+G     K + +A++L   +  + L P + 
Sbjct: 275 NGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIV 334

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N LI   CD  ++   + + + +KS GL P  +TY+ L+    + +++   L L+ + 
Sbjct: 335 TYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEM 394

Query: 393 KEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 452
           +E  + P+ V +  +I   +R     +    H L   SG   + + +T   L+      V
Sbjct: 395 EERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGL--VPDVYTYSVLI--HGLCV 450

Query: 453 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAF 512
            G +     + K LG + L  N+ I   ++        +                  RA 
Sbjct: 451 HGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSY-----------------RAL 493

Query: 513 SLLEEAASFGIVPCVS 528
            LL E    G+VP V+
Sbjct: 494 RLLNEMVHSGMVPNVA 509



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 107/469 (22%), Positives = 199/469 (42%), Gaps = 67/469 (14%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N  +      + +  L  M  +G + +   ++     + +S    K  + F +L     L
Sbjct: 97  NAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNELKSKVVL 156

Query: 93  S--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
              +F +++  C  +      F++L +++E GL  +  +YTTLI  C K G V       
Sbjct: 157 DAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLF 216

Query: 144 -------------------------------DAMFENVK-----PDRVVFNALITACGQS 167
                                            M+EN+K     P+   +N LI+     
Sbjct: 217 CKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNG 276

Query: 168 GAVDRAFDVLAEMNAE--VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 224
           G VD+AF V AEM  +     V   +I IG L +         +  E  K++HK N  G 
Sbjct: 277 GMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRG-------KKFGEAVKLVHKVNKVGL 329

Query: 225 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           +P +  Y I IN     G  + A  +++ +   G+ P  V  + LI        +  A +
Sbjct: 330 SPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALD 389

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +++E + + I+   ++Y+ L+ A +     +KA E++  M+   L P V T + LI  LC
Sbjct: 390 LVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLC 449

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
               + +  ++   +  + L PN++ Y+ ++    ++      L LL++    G++PN+ 
Sbjct: 450 VHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVA 509

Query: 403 MFKCIIGMCSR--RYEKARTLNEHVLSFNSG-RPQIENKWTSLALMVYR 448
            F   IG+  R  ++++A  L   ++  NSG +P +     SL  MV++
Sbjct: 510 SFCSTIGLLCRDEKWKEAELLLGQMI--NSGLKPSV-----SLYKMVHK 551



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 140/321 (43%), Gaps = 23/321 (7%)

Query: 30  HSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H+Y    N   +QG   E   + E+M+R G++     Y+      C     + +AF+ F 
Sbjct: 229 HTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNG-GMVDKAFKVFA 287

Query: 86  LVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +    ++    T+N+L+      K    A +++  V + GL  +   Y  LI      G
Sbjct: 288 EMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVG 347

Query: 142 KVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K+D    +F  +K     P  V +N LI    +   +  A D++ EM  E   + P  +T
Sbjct: 348 KMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEM--EERCIAPSKVT 405

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDD 251
              L+ A A     ++A E++ ++ K  +   P+VYT  + I+     G+ + A  ++  
Sbjct: 406 YTILIDAFARLNYTEKACEMHSLMEKSGL--VPDVYTYSVLIHGLCVHGNMKEASKLFKS 463

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           + +  + P+ V  + +I      G    A  +L E  + G+   + S+ S +G     + 
Sbjct: 464 LGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEK 523

Query: 312 WQKALELYEHMKSIKLKPTVS 332
           W++A  L   M +  LKP+VS
Sbjct: 524 WKEAELLLGQMINSGLKPSVS 544



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y +++ A  ++ +  +AL    HM      P  +T N L+  L   +   K   + +++K
Sbjct: 92  YDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNELK 151

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           S  +  +  ++ I++  C        G  LL+  +E G+ PN+V++  +I  C +
Sbjct: 152 S-KVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCK 205


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 123/514 (23%), Positives = 218/514 (42%), Gaps = 43/514 (8%)

Query: 25  VSEQLHSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++   ++YN LI   ++G +  E   + E+M+  G    DKV +    +V       KEA
Sbjct: 275 IAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGF-SYDKVTYNALLDVYGKSHRPKEA 333

Query: 81  FRFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            +   ++V N   P++ T+N L+S  A     + A ++   + E G K D   YTTL++ 
Sbjct: 334 MKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSG 393

Query: 137 CAKSGKVDA---MFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             ++GKV++   +FE +     KP+   FNA I   G  G       +  E+N  V  + 
Sbjct: 394 FERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEIN--VCGLS 451

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD +T   L+      G       V+K + +       E +   I+  S+ G +E A +V
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           Y  M   GV PD    + ++      G  E + ++L E ++       ++Y SL+ A +N
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYAN 571

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            K       L E + S  ++P    +  L+      D LP+     S++K  G  P+  T
Sbjct: 572 GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITT 631

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----------RYEK 417
            + ++    R+  V     +L   KE G  P++  +  ++ M SR           R   
Sbjct: 632 LNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREIL 691

Query: 418 ARTLNEHVLSFNSG-RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 476
           A+ +   ++S+N+       N     A  ++ E   +G +P V   +  +G     Y AD
Sbjct: 692 AKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGS----YAAD 747

Query: 477 IRERLVENLGVSADALK------RSNLCSLIDGF 504
                 E +GV    +K      ++   S++DG+
Sbjct: 748 --SMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 191/431 (44%), Gaps = 59/431 (13%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L ++GR+S   ++   ++  G   +D   +    +   +    +EA   FK +      P
Sbjct: 183 LGKEGRVSSAANMFNGLQEDGF-SLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKP 241

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEA---GLKADCKLYTTLITTCAKSG---KVD 144
           TL T+N++++V    K      ++  LV++    G+  D   Y TLIT C +     +  
Sbjct: 242 TLITYNVILNVFG--KMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAA 299

Query: 145 AMFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            +FE +K      D+V +NAL+   G+S     A  VL EM   ++   P  +T  +L+ 
Sbjct: 300 QVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEM--VLNGFSPSIVTYNSLIS 357

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A A  G +D A E+   + +   K     YT  ++   + G  E A S++++M   G  P
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKP 417

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG--------------- 304
           +    +A I   G+ GK     +I  E    G+S  I+++++L+                
Sbjct: 418 NICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVF 477

Query: 305 --------------------ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
                               A S   ++++A+ +Y  M    + P +ST N ++ AL  G
Sbjct: 478 KEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARG 537

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM-LLSQAKEDGVI-PNLV 402
               ++ +VL++M+     PN +TY  LL A    +  E+GLM  L++    GVI P  V
Sbjct: 538 GMWEQSEKVLAEMEDGRCKPNELTYCSLLHA--YANGKEIGLMHSLAEEVYSGVIEPRAV 595

Query: 403 MFKCIIGMCSR 413
           + K ++ +CS+
Sbjct: 596 LLKTLVLVCSK 606



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 3/263 (1%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D  V   +I+  G+ G V  A ++   +  +   +D    T  +L+ A AN+G+   A  
Sbjct: 172 DNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYT--SLISAFANSGRYREAVN 229

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           V+K + +   K T   Y + +N   + G  W    S+ + M   G+ PD    + LI   
Sbjct: 230 VFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCC 289

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
                 + A ++ +E K  G S   ++Y++L+     +   ++A+++   M      P++
Sbjct: 290 KRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSI 349

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T N+LI+A      L + ME+ + M   G  P+  TY+ LL   ER   VE  + +  +
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEE 409

Query: 392 AKEDGVIPNLVMFKCIIGMCSRR 414
            +  G  PN+  F   I M   R
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNR 432



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 154/388 (39%), Gaps = 38/388 (9%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDA 145
           S   +++S+         A  +   +QE G   D   YT+LI+  A SG+          
Sbjct: 174 SVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKK 233

Query: 146 MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           M E+  KP  + +N ++   G+ G        L E   +   + PD  T   L+  C   
Sbjct: 234 MEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVE-KMKSDGIAPDAYTYNTLITCCKRG 292

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
                A +V++ +           Y   ++   ++   + A  V ++M   G  P  V  
Sbjct: 293 SLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTY 352

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++LI      G ++ A E+  +   +G    + +Y++L+     A   + A+ ++E M++
Sbjct: 353 NSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRN 412

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVE 383
              KP + T NA I    +  +  + M++  ++   GL P+ +T++ LL V  +   D E
Sbjct: 413 AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSE 472

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTS 441
           V   +  + K  G +P    F  +I   SR   +E+A T                     
Sbjct: 473 VS-GVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMT--------------------- 510

Query: 442 LALMVYREAIVAGTIPTVEVVSKVLGCL 469
               VYR  + AG  P +   + VL  L
Sbjct: 511 ----VYRRMLDAGVTPDLSTYNTVLAAL 534



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 12/199 (6%)

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
           DW      Y  M    V+      + +I   G  G+V +A  +    +  G S+ + SY+
Sbjct: 159 DWFMKQKDYQSMLDNSVV------AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYT 212

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD-GDQLPKTMEVLSDMKS 359
           SL+ A +N+  +++A+ +++ M+    KPT+ T N ++      G    K   ++  MKS
Sbjct: 213 SLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKS 272

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYE 416
            G+ P+  TY+ L+  C+R    +    +  + K  G   + V +  ++   G   R  E
Sbjct: 273 DGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKE 332

Query: 417 KARTLNEHVLSFNSGRPQI 435
             + LNE VL  N   P I
Sbjct: 333 AMKVLNEMVL--NGFSPSI 349



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/354 (18%), Positives = 155/354 (43%), Gaps = 23/354 (6%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKS-QKAI 77
           +S  + ++N L+    + G  SE   + ++M+R G +   + ++     ++ C S ++A+
Sbjct: 450 LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM 509

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
               R       P LST+N +++  A     E + +VL  +++   K +   Y +L+   
Sbjct: 510 TVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAY 569

Query: 138 AKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAV---DRAFDVLAEMNAEVHP 186
           A   ++  M           ++P  V+   L+  C +   +   +RAF  L E       
Sbjct: 570 ANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERG----- 624

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             PD  T+ +++        V +A  V   + +     +   Y   +   S++ D+  + 
Sbjct: 625 FSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSE 684

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +  ++  KG+ PD +  + +I       ++  A  I  E +N GI   +I+Y++ +G+ 
Sbjct: 685 EILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSY 744

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           +    +++A+ +  +M     +P  +T N+++   C  ++  +    + D+++L
Sbjct: 745 AADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNL 798



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 92/234 (39%), Gaps = 37/234 (15%)

Query: 13  YPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           Y NGK     H ++E+++S                       G+++   V       VC 
Sbjct: 569 YANGKEIGLMHSLAEEVYS-----------------------GVIEPRAVLLKTLVLVCS 605

Query: 73  SQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
               + EA R F  +     +P ++T N ++S+    +    A  VL  ++E G      
Sbjct: 606 KCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMA 665

Query: 129 LYTTLITTCAKS---GKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
            Y +L+   ++S   GK + +      + +KPD + +N +I A  ++  +  A  + +EM
Sbjct: 666 TYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEM 725

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
                 + PD IT    + + A     + A  V + + K+  +     Y   ++
Sbjct: 726 RNS--GIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVD 777


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 179/389 (46%), Gaps = 17/389 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L  +GR+SE + L++ M   G    +  Y      +CKS  +   A   F+ +    +
Sbjct: 212 NGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS-ALALDLFRKMEERNI 270

Query: 93  STFNMLMSVCASSKDSEGAFQ-VLRLVQE---AGLKADCKLYTTLITTCAKSGKVD---- 144
               +  S+   S   +G+F   L L  E    G+KAD   Y++LI      GK D    
Sbjct: 271 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAK 330

Query: 145 ----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                +  N+ PD V F+ALI    + G +  A ++  EM      + PD IT  +L+  
Sbjct: 331 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMIT--RGIAPDTITYNSLIDG 388

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                 +  A +++ ++     +     Y+I IN   +    +    ++ +++ KG+IP+
Sbjct: 389 FCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPN 448

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 319
            +  + L+     +GK+ AA E+ QE  ++G+   +++Y  L+ G C N +   KALE++
Sbjct: 449 TITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE-LNKALEIF 507

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E M+  ++   +   N +I  +C+  ++     +   +   G+ P+ +TY++++    +K
Sbjct: 508 EKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 567

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             +    ML  + KEDG  P+   +  +I
Sbjct: 568 GSLSEADMLFRKMKEDGCTPDDFTYNILI 596



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 201/453 (44%), Gaps = 34/453 (7%)

Query: 6   KNMLQFPYP-NGKHANYAH------------DVSEQLHSYNRLIRQG----RISECIDLL 48
           K M+Q   P N K +N+               ++E   SY   +R G    ++++ IDL 
Sbjct: 28  KKMIQRLIPLNRKASNFTQILEKGTSLLHYSSITEAKLSYKERLRNGIVDIKVNDAIDLF 87

Query: 49  EDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCAS 104
           E M +   L    +   R  +     K       F K +        + T  ++++    
Sbjct: 88  ESMIQSRPLPT-PIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCR 146

Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAMFE-NVKPDRVV 156
            K    AF VL    + G + D   ++TL+      G+V       D M E   +PD V 
Sbjct: 147 KKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVT 206

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
            + LI      G V  A  VL +   E +   PD +T G ++     +G    A ++++ 
Sbjct: 207 VSTLINGLCLKGRVSEAL-VLIDRMVE-YGFQPDEVTYGPVLNRLCKSGNSALALDLFRK 264

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           + + NIK +   Y+I I+   + G ++ A S++++M  KG+  D V  S+LI    + GK
Sbjct: 265 MEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 324

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
            +   ++L+E   + I   ++++S+L+          +A ELY  M +  + P   T N+
Sbjct: 325 WDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNS 384

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           LI   C  + L +  ++   M S G  P+ +TYSIL+ +  +   V+ G+ L  +    G
Sbjct: 385 LIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKG 444

Query: 397 VIPNLVMFKC-IIGMC-SRRYEKARTLNEHVLS 427
           +IPN + +   ++G C S +   A+ L + ++S
Sbjct: 445 LIPNTITYNTLVLGFCQSGKLNAAKELFQEMVS 477


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/419 (22%), Positives = 180/419 (42%), Gaps = 53/419 (12%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS--- 93
           R G +++  DL++    K ++  +    A  F+    Q  ++ A     ++    +S   
Sbjct: 123 RVGDMAQVFDLMQ----KQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNG 178

Query: 94  -TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF----- 147
            T+N L+     S     A +V + + E G+    + Y+ L+ +  K   VD +      
Sbjct: 179 YTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNE 238

Query: 148 ---ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                VKP+   +   I   GQ+   D A+ +L +M  E     PD +T   +++   +A
Sbjct: 239 MEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKM--EDSGCKPDVVTHTVVIQVLCDA 296

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G++  A++V+  +   + K     Y   ++ C  +GD +    +++ M   G   + V  
Sbjct: 297 GRLSDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSY 356

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL------ 318
           +A++D     G+++ A  +  E K +GIS    SY+SL+     A  + +ALEL      
Sbjct: 357 TAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNA 416

Query: 319 -----------------------------YEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
                                        YEHMKS  + P V+  NA++++L    +L  
Sbjct: 417 CGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGM 476

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              V  ++K +G+ P+TITY++++  C +    +  +   S   E G +P+++    +I
Sbjct: 477 AKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLI 535



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 49/372 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DA 145
           P + ++ + + V   +   + A+Q+L  ++++G K D   +T +I     +G++    D 
Sbjct: 246 PNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDV 305

Query: 146 MFE----NVKPDRVVFNALITACGQSG--------------------------------- 168
            ++    + KPDRV +  L+  CG SG                                 
Sbjct: 306 FWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQ 365

Query: 169 --AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
              +D A  V  EM  +   + P+  +  +L+     A   DRA E++   H      +P
Sbjct: 366 VGRLDEALAVFDEMKEK--GISPEQYSYNSLISGFLKADMFDRALELFN--HMNACGPSP 421

Query: 227 EVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
             YT  + IN   ++G    A   Y+ M  KG++PD    +A++     +G++  A  + 
Sbjct: 422 NGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVF 481

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
            E K+ G+S   I+Y+ ++  CS A    +A+  +  M      P V  +N+LI  L  G
Sbjct: 482 YELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKG 541

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            +  +  ++   +K + + P   TY+ LL    R+  V+  + LL +       PNL+ +
Sbjct: 542 GKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITY 601

Query: 405 KCIIGMCSRRYE 416
             ++   S+  E
Sbjct: 602 NTVLDCLSKNGE 613



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 179/415 (43%), Gaps = 21/415 (5%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNV-CKSQKA 76
           A  V   ++SY   IR      R  E   +L  ME  G    D V H     V C + + 
Sbjct: 241 ARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGC-KPDVVTHTVVIQVLCDAGRL 299

Query: 77  IKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
                 F+K+  +   P   T+  L+  C  S DS+   ++   +   G   +   YT +
Sbjct: 300 SDAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAV 359

Query: 134 ITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +    + G++D   A+F+ +K     P++  +N+LI+   ++   DRA ++   MNA   
Sbjct: 360 VDALCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFLKADMFDRALELFNHMNA-CG 418

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
           P  P+  T    +     +GQ  +A + Y+ +    I          ++  +++G    A
Sbjct: 419 P-SPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLARSGRLGMA 477

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             V+ ++   GV PD +  + +I     A K + A     +    G    +++ +SL+  
Sbjct: 478 KRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDT 537

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
                   +A +L+  +K +K++PT  T N L++ L    ++ + M +L +M      PN
Sbjct: 538 LYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPN 597

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA 418
            ITY+ +L    +  +V   + +L    E G  P+L  +  ++ G+    R+E+A
Sbjct: 598 LITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIKEERFEEA 652



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/351 (20%), Positives = 155/351 (44%), Gaps = 15/351 (4%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
            ++ +  + + I+  E++  +G+L  D        ++CK +KA+ EA + F       +S 
Sbjct: 713  ILNKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKAL-EAHQLFNKFKGLGVSL 771

Query: 94   ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
               ++N L+         + A  +   ++  G   D   Y  ++    KS +++ M    
Sbjct: 772  KTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIEEMLRVQ 831

Query: 148  -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                 +  +   V +N +I+   +S  +++A D+   + +E     P   T G L+    
Sbjct: 832  AEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSE--GFSPTPCTYGPLLDGLL 889

Query: 203  NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             AG++  A  ++  + +Y  K    +Y I +N     G+ E  C +++ M ++G+ PD  
Sbjct: 890  KAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIK 949

Query: 263  FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
              + LID    AG++       ++    G+   +I Y+ L+     ++  ++A+ L+  M
Sbjct: 950  SYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVCLFNEM 1009

Query: 323  KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            K   + P + T N+LI  L    +  +  ++  ++   G  PN  TY+ L+
Sbjct: 1010 KKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALI 1060



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 174/388 (44%), Gaps = 26/388 (6%)

Query: 25   VSEQLHSYNRLIRQGRISECI-----DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
            VS +  SYN LIR G + E +     DL  +M+R G    +  Y+     + KS + I+E
Sbjct: 769  VSLKTGSYNSLIR-GLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMR-IEE 826

Query: 80   AFR----FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
              R      +     T  T+N ++S    SK  E A  +   +   G       Y  L+ 
Sbjct: 827  MLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLD 886

Query: 136  TCAKSGK-VDA------MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
               K+GK VDA      M E   KP+  ++N L+     +G  +    +  +M  +   +
Sbjct: 887  GLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQ--GI 944

Query: 188  DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            +PD  +   L+     AG+++     ++ + +  ++    +Y + I+   ++   E A  
Sbjct: 945  NPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGLGKSERIEEAVC 1004

Query: 248  VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
            ++++M KKG++P+    ++LI   G AGK   A ++ +E   +G    + +Y++L+   S
Sbjct: 1005 LFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELLIKGWKPNVFTYNALIRGYS 1064

Query: 308  NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
             + +   A   Y+ +        VS   ALI+ L D + +     + ++MK  G  P+  
Sbjct: 1065 VSGSTDNAYAAYDCVAV-----GVSLKTALISGLVDENLINIAEGLFAEMKRRGCGPDQF 1119

Query: 368  TYSILLVACERKDDVEVGLMLLSQAKED 395
            TY+++L A  +   +E  L +  +  ED
Sbjct: 1120 TYNLILDAIGKSMRIEEMLKVQEEIAED 1147



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 97/470 (20%), Positives = 177/470 (37%), Gaps = 65/470 (13%)

Query: 16   GKHANYAHDVSEQLHS--------YNRLI----RQGRISECIDLLEDMERKGLLDMDKVY 63
            GK     H + E  HS        YN ++    + G ++  I +L  M  KG       Y
Sbjct: 577  GKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSY 636

Query: 64   HARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
            +   + + K ++  +EAFR F  +       +  L ++  S   +    + L  V+E  L
Sbjct: 637  NTVMYGLIKEER-FEEAFRMFCQMKKILAPDYATLCTILPSFVKNGLMKEALHTVKEYIL 695

Query: 124  KADCK-----LYTTLITTCAKSG--KVDAMFENVKPDRVV-------------------- 156
            KADC       ++ +     K+G  K     EN+    ++                    
Sbjct: 696  KADCNTDKSSFHSLMEGILNKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKAL 755

Query: 157  --------------------FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                                +N+LI        +D A D+  EM  +     PD  T   
Sbjct: 756  EAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEM--KRLGCGPDEFTYNL 813

Query: 197  LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
            ++ A   + +++    V   +H+   + T   Y   I+   ++   E A  +Y ++  +G
Sbjct: 814  ILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEG 873

Query: 257  VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
              P       L+D    AGK+  A  +  E    G       Y+ L+     A N +   
Sbjct: 874  FSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVC 933

Query: 317  ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            +++E M    + P + +   LI  LC   +L   +     +  LGL P+ I Y++L+   
Sbjct: 934  QIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIYNLLIDGL 993

Query: 377  ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNE 423
             + + +E  + L ++ K+ G++PNL  +  +I   G   +  E A+   E
Sbjct: 994  GKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEE 1043



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/466 (21%), Positives = 188/466 (40%), Gaps = 63/466 (13%)

Query: 12  PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           P PNG    Y H     +   N   + G+  + I   E M+ KG++      +A   ++ 
Sbjct: 419 PSPNG----YTH-----VLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSLA 469

Query: 72  KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           +S +       F++L     +P   T+ M++  C+ +  ++ A      + E G   D  
Sbjct: 470 RSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVL 529

Query: 129 LYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
              +LI T  K GK +  ++         ++P    +N L++  G+ G V     +L EM
Sbjct: 530 ALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGLGREGKVKEVMHLLEEM 589

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRA-REVYKMIHK--------YN------IKGT 225
              +HP  P+ IT   ++   +  G+V+ A   +Y M  K        YN      IK  
Sbjct: 590 THSIHP--PNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPDLSSYNTVMYGLIK-- 645

Query: 226 PEVYTIAINCCSQ-----TGDWEFACSVYDDMTKKGVI-----------------PDEVF 263
            E +  A     Q       D+   C++     K G++                  D+  
Sbjct: 646 EERFEEAFRMFCQMKKILAPDYATLCTILPSFVKNGLMKEALHTVKEYILKADCNTDKSS 705

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
             +L++   +   VE + E  +   ++GI +       L+      K   +A +L+   K
Sbjct: 706 FHSLMEGILNKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFK 765

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
            + +     + N+LI  L D + +    ++ ++MK LG  P+  TY+++L A  +   +E
Sbjct: 766 GLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRIE 825

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTLNEHVLS 427
             L + ++    G     V +  II   + S+R E+A  L  +++S
Sbjct: 826 EMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMS 871



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/320 (20%), Positives = 139/320 (43%), Gaps = 11/320 (3%)

Query: 97   MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFENVK-- 151
            ++  +C   K  E A Q+    +  G+      Y +LI        +D    +F  +K  
Sbjct: 744  LIRHLCKHKKALE-AHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRL 802

Query: 152  ---PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
               PD   +N ++ A G+S  ++    V AEM+ + +  +  ++T   ++     + +++
Sbjct: 803  GCGPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGY--ESTYVTYNTIISGLVKSKRLE 860

Query: 209  RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            +A ++Y  +       TP  Y   ++   + G    A +++++M + G  P+    + L+
Sbjct: 861  QAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPNCTIYNILL 920

Query: 269  DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
            +    AG  E   +I ++   QGI+  I SY+ L+     A      L  +  +  + L+
Sbjct: 921  NGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLE 980

Query: 329  PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
            P +   N LI  L   +++ + + + ++MK  G+ PN  TY+ L++   +         +
Sbjct: 981  PDLIIYNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQM 1040

Query: 389  LSQAKEDGVIPNLVMFKCII 408
              +    G  PN+  +  +I
Sbjct: 1041 YEELLIKGWKPNVFTYNALI 1060



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/432 (17%), Positives = 158/432 (36%), Gaps = 46/432 (10%)

Query: 13  YPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           Y + K      DV+      + L R GR+     +  +++  G+   D + +      C 
Sbjct: 446 YEHMKSKGIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGV-SPDTITYTMMIKCCS 504

Query: 73  SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
                 EA  FF  +      P +   N L+           A+++   ++E  ++    
Sbjct: 505 KASKADEAMNFFSDMVETGCVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEPTNG 564

Query: 129 LYTTLITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEM 180
            Y TL++   + GKV  +   ++        P+ + +N ++    ++G V+ A  +L  M
Sbjct: 565 TYNTLLSGLGREGKVKEVMHLLEEMTHSIHPPNLITYNTVLDCLSKNGEVNCAIGMLYSM 624

Query: 181 NAEVHPVD--------------------------------PDHITIGALMKACANAGQVD 208
             +    D                                PD+ T+  ++ +    G + 
Sbjct: 625 TEKGCTPDLSSYNTVMYGLIKEERFEEAFRMFCQMKKILAPDYATLCTILPSFVKNGLMK 684

Query: 209 RA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
            A   V + I K +       +   +         E +    +++  +G++ ++ FL  L
Sbjct: 685 EALHTVKEYILKADCNTDKSSFHSLMEGILNKAGVEKSIEFAENIASRGILLNDFFLCPL 744

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I       K   A ++  + K  G+S+   SY+SL+    +      A +L+  MK +  
Sbjct: 745 IRHLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGC 804

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P   T N ++ A+    ++ + + V ++M   G     +TY+ ++    +   +E  + 
Sbjct: 805 GPDEFTYNLILDAMGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLVKSKRLEQAID 864

Query: 388 LLSQAKEDGVIP 399
           L      +G  P
Sbjct: 865 LYYNLMSEGFSP 876



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           V + L +A G + A++  F   A     VH  +  +  +  LM+A    G+V    +V+ 
Sbjct: 78  VVHMLRSAPGPAEALE-LFTAAARQPTAVHTTESCNYML-ELMRA---HGRVGDMAQVFD 132

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
           ++ K  +K     +    +     G    A      M + G+  +    + LI F   +G
Sbjct: 133 LMQKQIVKANVGTFATVFSGVGVQGGLRSAPVALPVMREAGMSLNGYTYNGLIYFLVKSG 192

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
               A E+ +     GIS  + +YS LM +    ++    L L   M++  +KP V +  
Sbjct: 193 FDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDTVLWLLNEMEARGVKPNVYSYT 252

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACE 377
             I  L    +  +  ++L  M+  G  P+ +T+++++ V C+
Sbjct: 253 ICIRVLGQAARFDEAYQILGKMEDSGCKPDVVTHTVVIQVLCD 295



 Score = 41.2 bits (95), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 30/174 (17%)

Query: 32   YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
            YN LI    +  RI E + L  +M++KG++     Y++   ++ K+ KA + A  + +L+
Sbjct: 986  YNLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKASEAAQMYEELL 1045

Query: 88   PN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                 P + T+N L+   + S  ++ A+             DC      + T   SG VD
Sbjct: 1046 IKGWKPNVFTYNALIRGYSVSGSTDNAYAAY----------DCVAVGVSLKTALISGLVD 1095

Query: 145  --------AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
                     +F  +K     PD+  +N ++ A G+S  ++    V  E+  +++
Sbjct: 1096 ENLINIAEGLFAEMKRRGCGPDQFTYNLILDAIGKSMRIEEMLKVQEEIAEDLN 1149


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 155/332 (46%), Gaps = 13/332 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T N+++     + D+E A  ++  +   GLK     Y +++    +SG  D  +E 
Sbjct: 128 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 187

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V PD   F  LI    + G ++ A  +  EM      + PD ++   L+   
Sbjct: 188 FKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR--GIKPDLVSFSCLIGLF 245

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A  G++D A    + +  + +     +YT+ I    + G    A  V D+M   G +PD 
Sbjct: 246 ARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDV 305

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
           V  + L++      ++  A  +L E + +G+   + ++++L+ G C   K   KAL+L++
Sbjct: 306 VTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGK-LDKALQLFD 364

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M + +L+P + T N LI  +C    L K  ++  DM S  + PN +TYSIL+ +   K 
Sbjct: 365 TMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKG 424

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            VE     L +    G++PN++ +  II G C
Sbjct: 425 QVEDAFGFLDEMINKGILPNIMTYNSIIKGYC 456



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 178/408 (43%), Gaps = 28/408 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L R G   +  ++ ++M+  G+    + +       C+  + I+EA + +K + +    P
Sbjct: 175 LCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGE-IEEALKIYKEMRHRGIKP 233

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            L +F+ L+ + A     + A   LR ++  GL  D  +YT +I    ++G +       
Sbjct: 234 DLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVR 293

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                    PD V +N L+    +   +  A  +L EM     P  PD  T   L+    
Sbjct: 294 DEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVP--PDLCTFTTLIHGYC 351

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G++D+A +++  +    ++     Y   I+   + GD + A  ++DDM  + + P+ V
Sbjct: 352 IEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHV 411

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             S LID     G+VE AF  L E  N+GI   I++Y+S++     + N  K  +  + M
Sbjct: 412 TYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 471

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
              K+ P + T N LI      D++    ++L+ M+   + P+ +TY++L+       +V
Sbjct: 472 MVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNV 531

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS 430
           +    +  +    G+ P+             RY     +N HV + NS
Sbjct: 532 QEAGWIFEKMCAKGIEPD-------------RYTYMSMINGHVTAGNS 566



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 153/358 (42%), Gaps = 13/358 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KV 143
           P P    F++L+     S+    AF+  RL+ +  +         L+   +++G      
Sbjct: 21  PTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAA 80

Query: 144 DA----MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           DA       N + +    N ++    ++   D+   V++EM  E   V PD +T   ++ 
Sbjct: 81  DAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEM--EKRCVFPDVVTHNVMVD 138

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A   AG  + A  +   +    +K     Y   +    ++G W+ A  V+ +M   GV P
Sbjct: 139 ARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAP 198

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D    + LI      G++E A +I +E +++GI   ++S+S L+G  +       A+   
Sbjct: 199 DVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYL 258

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M+   L P       +I   C    +   + V  +M   G  P+ +TY+ LL    ++
Sbjct: 259 REMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKE 318

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQI 435
             +     LL++ +E GV P+L  F  +I G C   + +KA  L + +L+    RP I
Sbjct: 319 RRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLN-QRLRPDI 375


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 181/374 (48%), Gaps = 16/374 (4%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLM-SVCA 103
           LL++ME++G++  + VY+     +C + +       +  +  N  P++ T+ +L+ ++C 
Sbjct: 189 LLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCK 248

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-------AMFEN-VKPDRV 155
           S++ S+ +  +L  + EAG   +   Y TLI    K G +D        M EN   PD  
Sbjct: 249 SARISDASL-ILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVF 307

Query: 156 VFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
            +N LI   C Q    D A  +L EM    +  +P+ IT   LM +   +G+   A  + 
Sbjct: 308 TYNILIDGYCKQERPQDGA-KLLQEMVK--YGCEPNFITYNTLMDSLVKSGKYIDAFNLA 364

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           +M+ + + K +   + + I+   + G  + A  ++  MT +G +PD    + +I  A  A
Sbjct: 365 QMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRA 424

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
            +++ A ++L+     G    +++Y+S++     A    +A E+YE +++      V T 
Sbjct: 425 NRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTC 484

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           + LI  LC   +L    ++L +M+  G  P+ + Y+IL+    + D ++  L   S+  +
Sbjct: 485 STLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLD 544

Query: 395 DGVIPNLVMFKCII 408
            G +P ++ +  +I
Sbjct: 545 KGCVPTVITYSIVI 558



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 122/504 (24%), Positives = 217/504 (43%), Gaps = 69/504 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           + L +  RIS+   +LEDM   G       Y+      CK     +    F +++ N   
Sbjct: 244 DALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCS 303

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T+N+L+   C   +  +GA    +L+QE  +K  C                     
Sbjct: 304 PDVFTYNILIDGYCKQERPQDGA----KLLQEM-VKYGC--------------------- 337

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
             +P+ + +N L+ +  +SG    AF+ LA+M        P H T   ++      GQ+D
Sbjct: 338 --EPNFITYNTLMDSLVKSGKYIDAFN-LAQMMLR-RDCKPSHFTFNLMIDMFCKVGQLD 393

Query: 209 RAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            A E+++++        P++YT  I I+   +    + A  + + MT+ G  PD V  ++
Sbjct: 394 LAYELFQLMTDRGC--LPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNS 451

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           ++     A +V+ A+E+ +  +N G  + +++ S+L+     ++    A +L   M+   
Sbjct: 452 IVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNG 511

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
             P V     LI   C  DQL K++   S+M   G  P  ITYSI++    +   V  G 
Sbjct: 512 SAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGC 571

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 444
           MLL    E GV P+ +++  +I G+C S  Y++A  L + +            K T  A 
Sbjct: 572 MLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLM------------KQTGCAP 619

Query: 445 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
            V    ++   +  V  + + +  L+          ++E+ G   D +  +   S+ DGF
Sbjct: 620 TVVTYNVLVDKLCKVSRLDEAIHLLE----------VMESDGCLPDTVTYN---SVFDGF 666

Query: 505 ---GEYDPRAFSLLEEAASFGIVP 525
               E+D +AF L +   S G  P
Sbjct: 667 WKSAEHD-KAFRLFQAMKSRGCSP 689



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 185/399 (46%), Gaps = 19/399 (4%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN LI    +Q R  +   LL++M + G       Y+    ++ KS K I +AF
Sbjct: 303 SPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYI-DAF 361

Query: 82  RFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              +++      P+  TFN+++ +       + A+++ +L+ + G   D   Y  +I+  
Sbjct: 362 NLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGA 421

Query: 138 AKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            ++ ++D    + E +      PD V +N++++   ++  VD A++V   +    + +D 
Sbjct: 422 CRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDV 481

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
             +T   L+     + ++D A ++ + + +         YTI I+   +    + + + +
Sbjct: 482 --VTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFF 539

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
            +M  KG +P  +  S +ID    + +V     +L+    +G++   I Y+S++     +
Sbjct: 540 SEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKS 599

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
            ++ +A ELY+ MK     PTV T N L+  LC   +L + + +L  M+S G  P+T+TY
Sbjct: 600 DSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTY 659

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + +     +  + +    L    K  G  P   M+  ++
Sbjct: 660 NSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLL 698



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 92/411 (22%), Positives = 176/411 (42%), Gaps = 28/411 (6%)

Query: 2   QDGGKNMLQFPYPNGKHANYAHDVSEQLHSYN----RLIRQGRISECIDLLEDMERKGLL 57
           QDG K +LQ     G   N+         +YN     L++ G+  +  +L + M R+   
Sbjct: 323 QDGAK-LLQEMVKYGCEPNFI--------TYNTLMDSLVKSGKYIDAFNLAQMMLRRDCK 373

Query: 58  DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQ 113
                ++      CK  + +  A+  F+L+ +    P + T+N+++S    +   + A Q
Sbjct: 374 PSHFTFNLMIDMFCKVGQ-LDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQ 432

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP--------DRVVFNALITACG 165
           +L  + EAG   D   Y ++++   K+ +VD  +E  +         D V  + LI    
Sbjct: 433 LLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLC 492

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
           +S  +D A  +L EM  E +   PD +    L+     A Q+D++   +  +       T
Sbjct: 493 KSRRLDDAEKLLREM--ERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPT 550

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
              Y+I I+   ++      C +   M ++GV PD +  +++ID    +   + A+E+ +
Sbjct: 551 VITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYK 610

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
             K  G +  +++Y+ L+          +A+ L E M+S    P   T N++        
Sbjct: 611 LMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSA 670

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           +  K   +   MKS G  P    YS+LL     ++ ++  + +  +A E G
Sbjct: 671 EHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAG 721



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 120/548 (21%), Positives = 220/548 (40%), Gaps = 111/548 (20%)

Query: 56  LLDMDKVYHARFFNVCKSQ--------------------KAIKEAFRFFKL----VPNPT 91
           L D+DK    +FF+ C  Q                    K  +EA+  FK     + +P 
Sbjct: 109 LDDLDKA--VKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPD 166

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA------ 145
             T++ L++    ++D + A+++L  +++ G+     +Y T+I     +G+VD+      
Sbjct: 167 SITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYR 226

Query: 146 -MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHP----------------- 186
            M  N  P  + +  L+ A  +S  +  A  +L +M  A   P                 
Sbjct: 227 DMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGN 286

Query: 187 ---------------VDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
                            PD  T   L+   C      D A+ + +M+ KY  +     Y 
Sbjct: 287 MDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMV-KYGCEPNFITYN 345

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             ++   ++G +  A ++   M ++   P     + +ID     G+++ A+E+ Q   ++
Sbjct: 346 TLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDR 405

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G    I +Y+ ++     A     A +L E M      P V T N++++ LC   Q+ + 
Sbjct: 406 GCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEA 465

Query: 351 MEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            EV   +++ G   + +T S L   L    R DD E    LL + + +G  P++V +  +
Sbjct: 466 YEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAE---KLLREMERNGSAPDVVAYTIL 522

Query: 408 I-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 466
           I G C     KA  L++                   +L  + E +  G +PTV   S V+
Sbjct: 523 IHGFC-----KADQLDK-------------------SLAFFSEMLDKGCVPTVITYSIVI 558

Query: 467 GCLQLPYNADIRE-----RLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAA 519
              +L  +A +R+     + +   GV+ DA+  +   S+IDG  + D    A+ L +   
Sbjct: 559 D--KLCKSARVRDGCMLLKTMLERGVTPDAIVYT---SVIDGLCKSDSYDEAYELYKLMK 613

Query: 520 SFGIVPCV 527
             G  P V
Sbjct: 614 QTGCAPTV 621



 Score = 39.3 bits (90), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           ++L +  R+ E I LLE ME  G L     Y++ F    KS +  K AFR F+ + +   
Sbjct: 629 DKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDK-AFRLFQAMKSRGC 687

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            PT   +++L++   + +  + A ++     EAG   D ++  TL
Sbjct: 688 SPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVDPEISRTL 732


>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
           mitochondrial-like [Glycine max]
          Length = 680

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 175/402 (43%), Gaps = 21/402 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF--RFF 84
           +YN LI    R G + + ++L+  M R G    D V ++           I      + +
Sbjct: 171 TYNALIGACARNGDVEKALNLMSKMRRDGY-QPDFVNYSSIIQYLTRSNKIDSPILQKLY 229

Query: 85  KLVPNPTLSTFNMLMS--VCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +    +     LM+  +   SK  D   A + L + Q  GL         +I     S
Sbjct: 230 AEIETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNS 289

Query: 141 GKV---DAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+    +A+FE ++     P    +NAL+    ++G++  A  V++EM  E   V PD  
Sbjct: 290 GRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEM--EKAGVKPDEQ 347

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+   A+AG+ + AR V K +   N++    V++  +      G+W+ +  V  DM
Sbjct: 348 TYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDM 407

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
              GV PD  F + +ID  G    ++ A    +   ++GI   I+++++L+     +   
Sbjct: 408 KSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRH 467

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
             A EL+  M+     P ++T N +I ++ +  +  +    LS M+S GL PN+ITY+ L
Sbjct: 468 DMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTL 527

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           +    +       +  L   K  G  P   M+  +I   ++R
Sbjct: 528 VDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQR 569



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/373 (22%), Positives = 159/373 (42%), Gaps = 13/373 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RFFKLVPNPTLSTF 95
           GR  E   L E++   GL    + Y+A      ++       F      K    P   T+
Sbjct: 290 GRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTY 349

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           ++L+ V A +   E A  VL+ ++ + ++ +  +++ ++      G+    F+       
Sbjct: 350 SLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKS 409

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             V+PDR  +N +I   G+   +D A      M +E  P  PD +T   L+     +G+ 
Sbjct: 410 SGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGIP--PDIVTWNTLIDCHCKSGRH 467

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A E++  + +         Y I IN   +   WE   +    M  +G+ P+ +  + L
Sbjct: 468 DMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTL 527

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           +D  G +G+   A E L+  K+ G       Y++L+ A +     + A+  +  M +  L
Sbjct: 528 VDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGL 587

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P++  +N+LI A  +  +  +   VL  MK   + P+ +TY+ L+ A  R +  +    
Sbjct: 588 TPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPA 647

Query: 388 LLSQAKEDGVIPN 400
           +  +    G  P+
Sbjct: 648 VYEEMVASGCTPD 660



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/342 (22%), Positives = 147/342 (42%), Gaps = 14/342 (4%)

Query: 80  AFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A RF  +      NP  ST   ++    +S  +  A  +   ++E GL+   + Y  L+ 
Sbjct: 260 AMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLK 319

Query: 136 TCAKSGKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              ++G + DA F         VKPD   ++ LI     +G  + A  VL EM  E   V
Sbjct: 320 GYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEM--EASNV 377

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P+      ++    + G+  ++ +V K +    ++     Y + I+   +    + A +
Sbjct: 378 QPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMA 437

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
            ++ M  +G+ PD V  + LID    +G+ + A E+  E + +G S  I +Y+ ++ +  
Sbjct: 438 TFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMG 497

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
             + W++       M+S  L+P   T   L+       +    +E L  +KS G  P + 
Sbjct: 498 EQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTST 557

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            Y+ L+ A  ++   E+ +        +G+ P+L+    +I 
Sbjct: 558 MYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLIN 599



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 147/345 (42%), Gaps = 58/345 (16%)

Query: 31  SYNRL----IRQGRISECIDLLEDMERKGLLDMDKVY--------HARFFNVCKSQKAIK 78
           +YN L    +R G + +   ++ +ME+ G+   ++ Y        HA      +S + + 
Sbjct: 313 AYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHA---GRWESARIVL 369

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           +      + PN  +  F+ +++      + + +FQVL+ ++ +G++ D   Y  +I T  
Sbjct: 370 KEMEASNVQPNSYV--FSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFG 427

Query: 139 KSGKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNA-------- 182
           K   +D   A FE      + PD V +N LI    +SG  D A ++ +EM          
Sbjct: 428 KYNCLDHAMATFERMLSEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCIT 487

Query: 183 -------------------------EVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 217
                                    +   + P+ IT   L+     +G+   A E  +++
Sbjct: 488 TYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVL 547

Query: 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 277
                K T  +Y   IN  +Q G  E A + +  MT +G+ P  + L++LI+  G   + 
Sbjct: 548 KSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRD 607

Query: 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             AF +LQ  K   I   +++Y++LM A    + +QK   +YE M
Sbjct: 608 AEAFAVLQYMKENNIEPDVVTYTTLMKALIRVEKFQKVPAVYEEM 652



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 114/541 (21%), Positives = 210/541 (38%), Gaps = 105/541 (19%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEG---AFQVLRLVQEAGLKADCKL-YTTLITTCAK 139
           ++ VP P    F  L S+CASS  S     A+ V+  +Q+  L    +L Y+ LI    +
Sbjct: 94  YRAVPAPLWHAF--LKSLCASSSSSSSIALAYAVVSWLQKHNLCFSYELLYSILINALGR 151

Query: 140 SGKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           S K+   F     + + P  + +NALI AC ++G V++A +++++M  + +   PD +  
Sbjct: 152 SEKLYEAFLLSQRQVLTP--LTYNALIGACARNGDVEKALNLMSKMRRDGY--QPDFVNY 207

Query: 195 GALMKACANAGQVD-------------------------------------RAREVYKMI 217
            ++++    + ++D                                     RA     M 
Sbjct: 208 SSIIQYLTRSNKIDSPILQKLYAEIETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMA 267

Query: 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP------------------ 259
               +   P      I     +G    A ++++++ + G+ P                  
Sbjct: 268 QSNGLNPKPSTLVAVILALGNSGRTHEAEALFEEIRENGLEPRTRAYNALLKGYVRTGSL 327

Query: 260 -----------------DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
                            DE   S LID   HAG+ E+A  +L+E +   +      +S +
Sbjct: 328 KDAEFVVSEMEKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRI 387

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +    +   WQK+ ++ + MKS  ++P     N +I      + L   M     M S G+
Sbjct: 388 LANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERMLSEGI 447

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKART 420
            P+ +T++ L+    +    ++   L S+ ++ G  P +  +  +I      +R+E+   
Sbjct: 448 PPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCITTYNIMINSMGEQQRWEQVTA 507

Query: 421 LNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVV-SKVLGCLQLPYNADIR- 478
               + S   G       +T+L  +  +    +  I  +EV+ S         YNA I  
Sbjct: 508 FLSKMQS--QGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINA 565

Query: 479 --ERLVENLGVSADALKRSN--------LCSLIDGFGE--YDPRAFSLLEEAASFGIVPC 526
             +R +  L V+A  L  +         L SLI+ FGE   D  AF++L+      I P 
Sbjct: 566 YAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPD 625

Query: 527 V 527
           V
Sbjct: 626 V 626


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 175/402 (43%), Gaps = 15/402 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPTLS 93
           +  +    I L E M+  G+      Y       C+  +   A+    +  KL   P + 
Sbjct: 93  KMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIV 152

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAM 146
           T + L++    SK    A  ++  +   G + +   + TLI       K       +D M
Sbjct: 153 TLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRM 212

Query: 147 F-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             +  +PD V +  ++    + G  D AF++L +M  E   ++P  +    ++       
Sbjct: 213 VAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM--EQGKLEPGVLIYNTIIDGLCKYK 270

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +D A  ++K +    I+     Y+  I+C    G W  A  +  DM ++ + PD    S
Sbjct: 271 HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 330

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           ALID     GK+  A ++  E   + I   I++YSSL+          +A +++E M S 
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 390

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
              P V T N LI   C   ++ + MEV  +M   GL  NT+TY+IL+    +  D ++ 
Sbjct: 391 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA 450

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
             +  +   DGV PN++ +  ++ G+C   + EKA  + E++
Sbjct: 451 QEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 187/409 (45%), Gaps = 52/409 (12%)

Query: 40  RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RISE + L++ M   G     +  + + H  F +  K+ +A+    R       P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH-NKASEAMALIDRMVAKGCQPDLVTY 224

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-------- 147
            ++++      D++ AF +L  +++  L+    +Y T+I    K   +D           
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + ++P+ V +++LI+     G    A  +L++M      ++PD  T  AL+ A    G++
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE--RKINPDVFTFSALIDAFVKEGKL 342

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGD-----WEFACS------------- 247
             A ++Y  + K +I  +   Y+  IN  C     D     +EF  S             
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402

Query: 248 ---------------VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
                          V+ +M+++G++ + V  + LI     AG  + A EI +E  + G+
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 293 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
              I++Y++L+ G C N K  +KA+ ++E+++  K++PT+ T N +I  +C   ++    
Sbjct: 463 PPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 521

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           ++  ++   G+ P+ + Y+ ++    RK   E    L  + KEDG +PN
Sbjct: 522 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 143/334 (42%), Gaps = 17/334 (5%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPN 89
           L   GR S+   LL DM ERK  ++ D    +   +    +  + EA + +    K   +
Sbjct: 301 LCNYGRWSDASRLLSDMIERK--INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 358

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P++ T++ L++        + A Q+   +       D   Y TLI    K  +V+   E 
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEV 418

Query: 150 VKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            +         + V +N LI    Q+G  D A ++  EM ++  P  P+ +T   L+   
Sbjct: 419 FREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP--PNIMTYNTLLDGL 476

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G++++A  V++ + +  ++ T   Y I I    + G  E    ++ +++ KGV PD 
Sbjct: 477 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDV 536

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + +I      G  E A  + +E K  G       Y++L+ A     + + + EL + 
Sbjct: 537 VAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKE 596

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           M+S       ST+  +   L DG      +++LS
Sbjct: 597 MRSCGFAGDASTIGLVTNMLHDGRLDKSFLDMLS 630



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 153/357 (42%), Gaps = 19/357 (5%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN +I    +   + + ++L ++ME KG+      Y +    +C   +    +     ++
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318

Query: 88  P---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
               NP + TF+ L+           A ++   + +  +      Y++LI       ++D
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378

Query: 145 ---AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
               MFE     +  PD V +N LI    +   V+   +V  EM+     +  + +T   
Sbjct: 379 EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ--RGLVGNTVTYNI 436

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L++    AG  D A+E++K +    +      Y   ++   + G  E A  V++ + +  
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + P     + +I+    AGKVE  +++      +G+   +++Y++++       + ++A 
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556

Query: 317 ELYEHMKSIKLKPTVSTMNALITA-LCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            L++ MK     P     N LI A L DGD+   + E++ +M+S G   +  T  ++
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDR-EASAELIKEMRSCGFAGDASTIGLV 612



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 115/272 (42%), Gaps = 13/272 (4%)

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D A  +  EM  +  P  P  I    L+ A A   + D    + + +    I      Y
Sbjct: 62  LDDAVALFGEM-VKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTY 119

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           +I INC  +      A +V   M K G  P+ V LS+L++   H+ ++  A  ++ +   
Sbjct: 120 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV 179

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            G     +++++L+          +A+ L + M +   +P + T   ++  LC       
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 239

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
              +L+ M+   L P  + Y+ ++    +   ++  L L  + +  G+ PN+V +  +I 
Sbjct: 240 AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299

Query: 410 -MCSR-RYEKA---------RTLNEHVLSFNS 430
            +C+  R+  A         R +N  V +F++
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSA 331



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 102/238 (42%), Gaps = 14/238 (5%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A +++ +M K    P  +  S L+       K +    + ++ +N GI     +YS L+ 
Sbjct: 65  AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILIN 124

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                     AL +   M  +  +P + T+++L+   C   ++ + + ++  M   G  P
Sbjct: 125 CFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQP 184

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 413
           NT+T++ L+      +     + L+ +    G  P+LV +  ++ G+C R          
Sbjct: 185 NTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLL 244

Query: 414 -RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
            + E+ + L   VL +N+    + + K    AL +++E    G  P V   S ++ CL
Sbjct: 245 NKMEQGK-LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 22/363 (6%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R F+ +P P + TFN+++       +   A  +   ++E G   D   + +LI    K G
Sbjct: 178 RLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCG 237

Query: 142 KVDAMFENV--------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++D + + V        K D V +NALI    + G ++ A+   A M  E   V  + +T
Sbjct: 238 ELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKRE--GVMANVVT 295

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYD 250
               + A    G V   RE  K+  +  ++G       YT  I+   + G  + A  + D
Sbjct: 296 FSTFVDAFCKEGLV---REAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLD 352

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M ++GV  + V  + L+D      KV  A ++L+  +  G+    + Y++L+      K
Sbjct: 353 EMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNK 412

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
           N +KAL L   MK+  L+  +S   ALI  LC+  +L +   +L+ M   GL PN I Y+
Sbjct: 413 NSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYT 472

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFN 429
            ++ AC +   V   + +L +  + G  PN++ +  +I G+C     KA +++E +  FN
Sbjct: 473 TMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLC-----KAGSIDEAISHFN 527

Query: 430 SGR 432
             R
Sbjct: 528 KMR 530



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 170/378 (44%), Gaps = 21/378 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA------IKEAFRFFKLVPNP 90
           ++G + E + L   M  +G+   +  Y       CK+ +       + E  R  + VP  
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVR--QGVPLN 362

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDAMF 147
            ++   ++  +C   K +E A  VLR++++AG++A+  LYTTLI        S K   + 
Sbjct: 363 VVTYTVLVDGLCKERKVAE-AEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLL 421

Query: 148 ENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
             +K      D  ++ ALI        +D A  +L +M+     ++P++I    +M AC 
Sbjct: 422 SEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES--GLEPNYIIYTTMMDACF 479

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            +G+V  A  + + I     +     Y   I+   + G  + A S ++ M   G+ P+  
Sbjct: 480 KSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQ 539

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +AL+D     G +  A ++  E  ++G+S+  + Y++L+       N   A  L   M
Sbjct: 540 AYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               L+  +      I+  C+ + +P+  EV S+M   G+ P+   Y+ L+   ++  ++
Sbjct: 600 IDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNL 659

Query: 383 EVGLMLLSQAKEDGVIPN 400
           E  + L  Q + + V+P+
Sbjct: 660 EEAISL--QDEMERVLPS 675



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 131/327 (40%), Gaps = 45/327 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P + TFN L+       + +   Q++  ++ +G KAD   Y  LI    K G+++  +  
Sbjct: 221 PDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGY 280

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E V  + V F+  + A  + G V  A  + A+M   V  +  +  T   L+   
Sbjct: 281 FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQM--RVRGMALNEFTYTCLIDGT 338

Query: 202 ANAGQVD-----------------------------------RAREVYKMIHKYNIKGTP 226
             AG++D                                    A +V +M+ K  ++   
Sbjct: 339 CKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANE 398

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
            +YT  I+      + E A  +  +M  KG+  D     ALI    +  K++ A  +L +
Sbjct: 399 LLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTK 458

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               G+    I Y+++M AC  +    +A+ + + +     +P V T  ALI  LC    
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS 518

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILL 373
           + + +   + M+ LGL PN   Y+ L+
Sbjct: 519 IDEAISHFNKMRDLGLDPNVQAYTALV 545


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 158/349 (45%), Gaps = 14/349 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P + TFN LM     +     A  +L  +  +G+  D   +TTL+    + G + A    
Sbjct: 183 PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRV 242

Query: 146 ---MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-HPVDPDHITIGALMKA 200
              M E    P +V  N LI    + G V+   D L  +  E+ +  +PD IT    +  
Sbjct: 243 KARMLEMGCSPTKVTVNVLINGYCKLGRVE---DALGYIQQEIANGFEPDQITYNTFVNG 299

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G V  A +V  ++ +         Y I +NC  + G  E A  + + M ++G +PD
Sbjct: 300 LCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPD 359

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LI       ++E A ++ ++   +G+S  + +++ L+ A     + Q AL L+E
Sbjct: 360 ITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFE 419

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            MKS    P   T N LI  LC   +L K +++L +M+S G   +T+TY+ ++    +K 
Sbjct: 420 EMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKM 479

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLS 427
            +E    +  Q    G+  N + F  +I G+C  +R + A  L   ++S
Sbjct: 480 RIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMIS 528



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 177/392 (45%), Gaps = 20/392 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRFFKLVPNPT 91
           L R  ++   + +LE+M   G+   +  +      F      + A++   R  ++  +PT
Sbjct: 195 LCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPT 254

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------D 144
             T N+L++        E A   ++     G + D   Y T +    ++G V       D
Sbjct: 255 KVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMD 314

Query: 145 AMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            M  E   PD   +N ++    ++G ++ A  +L +M        PD  T   L+ A  +
Sbjct: 315 VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVE--RGCLPDITTFNTLIVALCS 372

Query: 204 AGQVDRAREVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               +R  E   +  +  +KG +P+VYT  I IN   + GD + A  ++++M   G  PD
Sbjct: 373 G---NRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPD 429

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           EV  + LID     GK+  A ++L+E ++ G     ++Y++++         ++A E+++
Sbjct: 430 EVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFD 489

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    +     T N LI  LC   ++    +++S M S GL PN ITY+ +L    ++ 
Sbjct: 490 QMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQG 549

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           D++    +L     +G   ++V +  +I G+C
Sbjct: 550 DIKKAADILQTMTANGFEVDVVTYGTLINGLC 581



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/392 (19%), Positives = 166/392 (42%), Gaps = 16/392 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----P 88
           N   + GR+ + +  ++     G  + D++ +  F N       +  A +   ++     
Sbjct: 263 NGYCKLGRVEDALGYIQQEIANGF-EPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGH 321

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
           +P + T+N++++    +   E A  +L  + E G   D   + TLI       +++    
Sbjct: 322 DPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALD 381

Query: 145 ----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                  + + PD   FN LI A  + G    A  +  EM +      PD +T   L+  
Sbjct: 382 LARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSS--GCTPDEVTYNTLIDN 439

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             + G++ +A ++ K +       +   Y   I+   +    E A  V+D M  +G+  +
Sbjct: 440 LCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRN 499

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  + LID      +++ A +++ +  ++G+    I+Y+S++       + +KA ++ +
Sbjct: 500 AITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQ 559

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M +   +  V T   LI  LC   +    +++L  M+  G+      Y+ ++ +  R++
Sbjct: 560 TMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRN 619

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           +    + L  +  E G  P+   +K +  G+C
Sbjct: 620 NTRDAMNLFREMTEVGEPPDAFTYKIVFRGLC 651



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 120/268 (44%), Gaps = 5/268 (1%)

Query: 142 KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           ++D +F  ++ D VV+N L+    +   +     V +EM      + PD +T   LMKA 
Sbjct: 139 QLDPLF-GIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGE--RGIKPDVVTFNTLMKAL 195

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             A QV  A  + + +    +      +T  +    + G  + A  V   M + G  P +
Sbjct: 196 CRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTK 255

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
           V ++ LI+     G+VE A   +Q+    G     I+Y++ + G C N  +   AL++ +
Sbjct: 256 VTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNG-HVGHALKVMD 314

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M      P V T N ++  LC   QL +   +L+ M   G  P+  T++ L+VA    +
Sbjct: 315 VMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGN 374

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            +E  L L  Q    G+ P++  F  +I
Sbjct: 375 RLEEALDLARQVTLKGLSPDVYTFNILI 402



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 73/354 (20%), Positives = 148/354 (41%), Gaps = 18/354 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + G++ E   +L  M  +G L     ++     +C   + ++EA    + V     
Sbjct: 333 NCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNR-LEEALDLARQVTLKGL 391

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + TFN+L++      D + A ++   ++ +G   D   Y TLI      GK+    +
Sbjct: 392 SPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALD 451

Query: 149 NVKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            +K           V +N +I    +   ++ A +V  +M  ++  +  + IT   L+  
Sbjct: 452 LLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQM--DLQGISRNAITFNTLIDG 509

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVY-TIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                ++D A ++   +    ++     Y +I  + C Q GD + A  +   MT  G   
Sbjct: 510 LCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQ-GDIKKAADILQTMTANGFEV 568

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V    LI+    AG+ + A ++L+  + +G+     +Y+ ++ +     N + A+ L+
Sbjct: 569 DVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLF 628

Query: 320 EHMKSIKLKPTVSTMNALITALC-DGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
             M  +   P   T   +   LC  G  + +  + L +M   G  P   ++ +L
Sbjct: 629 REMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRML 682


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 174/391 (44%), Gaps = 17/391 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQ--KAIKEAF-RFFKLVPNP 90
           L + G + E + LL +M + G+ D D V ++   N  CK    K  KE   R +++  +P
Sbjct: 453 LCKNGFLDEAVVLLNEMSKDGI-DPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSP 511

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
               ++ L+  C      + A ++   +   G   D   +  L+T+  K+GKV    E +
Sbjct: 512 NGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFM 571

Query: 151 K--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +        P+ V F+ LI   G SG   +AF V  EM    H   P   T G+L+K   
Sbjct: 572 RCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGH--HPTFFTYGSLLKGLC 629

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G +  A +  K +H         +Y   +    ++G+   A S++ +M ++ ++PD  
Sbjct: 630 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 689

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEH 321
             ++LI      GK   A    +EA+ +G +    + Y+  +     A  W+  +   E 
Sbjct: 690 TYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQ 749

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M ++   P + T NA+I       ++ KT ++L +M +    PN  TY+ILL    ++ D
Sbjct: 750 MDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKD 809

Query: 382 VEVGLMLLSQAKEDGVIPN-LVMFKCIIGMC 411
           V    +L      +G++P+ L     ++G+C
Sbjct: 810 VSTSFLLYRSIILNGILPDKLTCHSLVLGIC 840



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 183/408 (44%), Gaps = 24/408 (5%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + +YN LI    R  RI++   LL DM RK ++  ++V +    N   ++  +  A
Sbjct: 299 VDADVCTYNMLIHDLCRSNRIAKGYLLLRDM-RKRMIHPNEVTYNTLINGFSNEGKVLIA 357

Query: 81  FRF------FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
            +       F L PN    TFN L+    S  + + A ++  +++  GL      Y  L+
Sbjct: 358 SQLLNEMLSFGLSPNHV--TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLL 415

Query: 135 TTCAKSGKVD---AMFENVKPD-----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               K+ + D     +  +K +     R+ +  +I    ++G +D A  +L EM+ +   
Sbjct: 416 DGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD--G 473

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           +DPD +T  AL+      G+   A+E+   I++  +     +Y+  I  C + G  + A 
Sbjct: 474 IDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAI 533

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +Y+ M  +G   D    + L+     AGKV  A E ++   + GI    +S+  L+   
Sbjct: 534 RIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGY 593

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            N+    KA  +++ M  +   PT  T  +L+  LC G  L +  + L  + ++    +T
Sbjct: 594 GNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDT 653

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           + Y+ LL A  +  ++   + L  +  +  ++P+   +  +I G+C +
Sbjct: 654 VMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRK 701



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/421 (21%), Positives = 174/421 (41%), Gaps = 52/421 (12%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           +R+G I + +++   M   G        +A   +V KS + +   + F K +      P 
Sbjct: 174 LREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDV-SVWSFLKEMLKRKICPD 232

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
           ++TFN+L++V  +    E +  +++ ++++G       Y T++    K G+  A  E   
Sbjct: 233 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 292

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 V  D   +N LI    +S  + + + +L +M   +  + P+ +T   L+   +N
Sbjct: 293 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM--IHPNEVTYNTLINGFSN 350

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G+V  A ++   +  + +      +   I+     G+++ A  ++  M  KG+ P EV 
Sbjct: 351 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 410

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHM 322
              L+D      + + A       K  G+ VG I+Y+ ++ G C N     +A+ L   M
Sbjct: 411 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNG-FLDEAVVLLNEM 469

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---- 378
               + P + T +ALI   C   +     E++  +  +GL PN I YS L+  C R    
Sbjct: 470 SKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCL 529

Query: 379 ----------------KDDVEVGLMLLSQAK---------------EDGVIPNLVMFKCI 407
                           +D     +++ S  K                DG++PN V F C+
Sbjct: 530 KEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCL 589

Query: 408 I 408
           I
Sbjct: 590 I 590



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 131/297 (44%), Gaps = 21/297 (7%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDV 176
           +V++ GL+ D  +    ITT      +        P R +   L    G+S  V  A   
Sbjct: 100 VVKQPGLETDHIVQLVCITT-----HILVRARMYDPARHILKELSLMSGKSSFVFGALMT 154

Query: 177 ---LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI-- 231
              L   N  V+ +         L++     G +  + E+++++  Y     P VYT   
Sbjct: 155 TYRLCNSNPSVYDI---------LIRVYLREGMIQDSLEIFRLMGLYGF--NPSVYTCNA 203

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            +    ++G+     S   +M K+ + PD    + LI+     G  E +  ++Q+ +  G
Sbjct: 204 ILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSG 263

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
            +  I++Y++++        ++ A+EL +HMKS  +   V T N LI  LC  +++ K  
Sbjct: 264 YAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGY 323

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            +L DM+   + PN +TY+ L+     +  V +   LL++    G+ PN V F  +I
Sbjct: 324 LLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALI 380



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 152/353 (43%), Gaps = 16/353 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R G + E I + E M  +G       ++    ++CK+ K + EA  F + + +    P  
Sbjct: 525 RMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK-VAEAEEFMRCMTSDGILPNT 583

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP 152
            +F+ L++   +S +   AF V   + + G       Y +L+    K G +    + +K 
Sbjct: 584 VSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKS 643

Query: 153 --------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                   D V++N L+TA  +SG + +A  +  EM      + PD  T  +L+      
Sbjct: 644 LHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQR--SILPDSYTYTSLISGLCRK 701

Query: 205 GQVDRAREVYKMIH-KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           G+   A    K    + N+     +YT  ++   + G W+      + M   G  PD V 
Sbjct: 702 GKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVT 761

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +A+ID     GK+E   ++L E  NQ     + +Y+ L+   S  K+   +  LY  + 
Sbjct: 762 TNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSII 821

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
              + P   T ++L+  +C+ + L   +++L      G+  +  T+++L+  C
Sbjct: 822 LNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKC 874



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/325 (19%), Positives = 140/325 (43%), Gaps = 30/325 (9%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
            P L+T+N+L+   +  KD   +F + R +                           +   
Sbjct: 792  PNLTTYNILLHGYSKRKDVSTSFLLYRSI---------------------------ILNG 824

Query: 150  VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
            + PD++  ++L+    +S  ++    +L         V+ D  T   L+  C   G+++ 
Sbjct: 825  ILPDKLTCHSLVLGICESNMLEIGLKILKAFICR--GVEVDRYTFNMLISKCCANGEINW 882

Query: 210  AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
            A ++ K++    I    +     ++  ++   ++ +  V  +M+K+G+ P+      LI+
Sbjct: 883  AFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLIN 942

Query: 270  FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                 G ++ AF + +E     I    ++ S+++ A +      +A  L   M  +KL P
Sbjct: 943  GLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVP 1002

Query: 330  TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            T+++   L+   C    + + +E+   M + GL  + ++Y++L+     K D+ +   L 
Sbjct: 1003 TIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELY 1062

Query: 390  SQAKEDGVIPNLVMFKCII-GMCSR 413
             + K DG + N   +K +I G+ +R
Sbjct: 1063 EEMKGDGFLANATTYKALIRGLLAR 1087



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/257 (21%), Positives = 113/257 (43%), Gaps = 3/257 (1%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           V++ LI    + G +  + ++   M   ++  +P   T  A++ +   +G+        K
Sbjct: 165 VYDILIRVYLREGMIQDSLEIFRLMG--LYGFNPSVYTCNAILGSVVKSGEDVSVWSFLK 222

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            + K  I      + I IN     G +E +  +   M K G  P  V  + ++ +    G
Sbjct: 223 EMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKG 282

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           + +AA E+L   K++G+   + +Y+ L+     +    K   L   M+   + P   T N
Sbjct: 283 RFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYN 342

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI    +  ++    ++L++M S GL PN +T++ L+     + + +  L +    +  
Sbjct: 343 TLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAK 402

Query: 396 GVIPNLVMFKCII-GMC 411
           G+ P+ V +  ++ G+C
Sbjct: 403 GLTPSEVSYGVLLDGLC 419



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 162/366 (44%), Gaps = 30/366 (8%)

Query: 58  DMDKV-YHARFFN-------VCKSQKAIKEAFRFFK---LVPNP--TLSTFNMLMSVCAS 104
           +M KV +H  FF        +CK    ++EA +F K    VP    T+    +L ++C S
Sbjct: 608 EMTKVGHHPTFFTYGSLLKGLCKGGH-LREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKS 666

Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--VDAMFE-------NVKPDRV 155
              ++       +VQ + L  D   YT+LI+   + GK  +  +F        NV P++V
Sbjct: 667 GNLAKAVSLFGEMVQRSIL-PDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKV 725

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           ++   +    ++G          +M+   H   PD +T  A++   +  G++++  ++  
Sbjct: 726 MYTCFVDGMFKAGQWKAGIYFREQMDNLGHT--PDIVTTNAMIDGYSRMGKIEKTNDLLP 783

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            +   N       Y I ++  S+  D   +  +Y  +   G++PD++   +L+     + 
Sbjct: 784 EMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESN 843

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMG-ACSNAK-NWQKALELYEHMKSIKLKPTVST 333
            +E   +IL+    +G+ V   +++ L+   C+N + NW  A +L + M S+ +     T
Sbjct: 844 MLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINW--AFDLVKVMTSLGISLDKDT 901

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            +A+++ L    +  ++  VL +M   G+ P +  Y  L+    R  D++   ++  +  
Sbjct: 902 CDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMI 961

Query: 394 EDGVIP 399
              + P
Sbjct: 962 AHKICP 967



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 116/275 (42%), Gaps = 5/275 (1%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P     NA++ +  +SG     +  L EM      + PD  T   L+      G  +++ 
Sbjct: 196 PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKR--KICPDVATFNILINVLCAEGSFEKSS 253

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            + + + K     T   Y   ++   + G ++ A  + D M  KGV  D    + LI   
Sbjct: 254 YLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDL 313

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
             + ++   + +L++ + + I    ++Y++L+   SN      A +L   M S  L P  
Sbjct: 314 CRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNH 373

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T NALI          + +++   M++ GL P+ ++Y +LL    +  + ++      +
Sbjct: 374 VTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMR 433

Query: 392 AKEDGVIPNLVMFKCII-GMCSRRY--EKARTLNE 423
            K +GV    + +  +I G+C   +  E    LNE
Sbjct: 434 MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNE 468


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 181/391 (46%), Gaps = 18/391 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N L   GR++E +D + +M R G+L     + A    +C   + I++A++ F    K   
Sbjct: 306 NGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGR-IEDAWKIFIDMKKKGC 364

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            P + T+  L+S    S+ + G F   R+ ++ G+  +   Y  L+    ++ ++D+   
Sbjct: 365 KPNVYTYTSLISGQRVSRMAIGLFH--RMSRD-GVVPNTVTYNALMNVLMENMEIDSALI 421

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      P+   +N LI      G  ++A  +L  M  +  P  P  +T   ++K 
Sbjct: 422 VFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNM-LKGRPT-PTLVTYNIIIKG 479

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             ++G  D A  V +++     +     YT  I+   +    E A  ++++M  +G+ P+
Sbjct: 480 YCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPN 539

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           EV  +ALI       K++ A  +L+  K  G    + +Y+ L+   +   N+  A EL +
Sbjct: 540 EVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 599

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M   K+ P V T + +I  LC+   +P  +E+ + M   G  PN  TYS L+ A  ++ 
Sbjct: 600 VMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEG 659

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
            VE    + S+ K+ G+IP+ V +  +I +C
Sbjct: 660 RVEEAEEMFSELKKQGLIPDEVTYVKMIEVC 690



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 104/464 (22%), Positives = 181/464 (39%), Gaps = 70/464 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAFRFFKLVPN 89
           N L+    I   + +   M + G L     Y+      C    ++KA+       K  P 
Sbjct: 408 NVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPT 467

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           PTL T+N+++     S D++ A +VL L++  G + D   YT LI+   K  K++    M
Sbjct: 468 PTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGM 527

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEM------------NAEVH---- 185
           F  +      P+ V + ALI+   +   +D A  +L  M            N  +H    
Sbjct: 528 FNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTK 587

Query: 186 -----------------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                             + PD +T   ++    N G +  A E++  + K+        
Sbjct: 588 QNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHT 647

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y+  I    Q G  E A  ++ ++ K+G+IPDEV    +I+    +GKV+ AF+ L E  
Sbjct: 648 YSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMI 707

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALE----------------------LYEHMKSIK 326
           N G    + +Y  L+    N   + K +                       L   +  + 
Sbjct: 708 NAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELD 767

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
            + +    +AL++ L    +  +   +   M S   CPN  TY   L++  R   V++ +
Sbjct: 768 FELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAM 827

Query: 387 MLLSQAKEDGVIPNLVMFK---CIIGMCSRRYEKARTLNEHVLS 427
            +     +     +L  +K   C +    RR E AR + E +LS
Sbjct: 828 DVFKHMSDQRCELHLTGYKELICTLCQLHRRKE-ARFVFEKMLS 870



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 140/323 (43%), Gaps = 14/323 (4%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--------EN 149
           ++  C++  +   A   L +  + G K     YTTL+    K      +         E 
Sbjct: 164 MIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREG 223

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           ++P+ +++N++I A  + G V  A  ++ ++      + PD  T  +++        +D 
Sbjct: 224 LQPNLLIYNSVINALCKDGNVRDAESIINKVFKS--GMKPDTFTYTSMILGYCRNRDLDS 281

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A E++  + +   +     Y+  IN    +G    A     +MT+ GV+P     +A I 
Sbjct: 282 AFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIV 341

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G++E A++I  + K +G    + +Y+SL+   S  +  + A+ L+  M    + P
Sbjct: 342 ALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLI---SGQRVSRMAIGLFHRMSRDGVVP 398

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
              T NAL+  L +  ++   + V + M   G  PNT +Y+ L+       D E  + +L
Sbjct: 399 NTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSML 458

Query: 390 SQAKEDGVIPNLVMFKCII-GMC 411
           +   +    P LV +  II G C
Sbjct: 459 TNMLKGRPTPTLVTYNIIIKGYC 481


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 179/389 (46%), Gaps = 17/389 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L  +GR+SE + L++ M   G    +  Y      +CKS  +   A   F+ +    +
Sbjct: 183 NGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS-ALALDLFRKMEERNI 241

Query: 93  STFNMLMSVCASSKDSEGAFQ-VLRLVQE---AGLKADCKLYTTLITTCAKSGKVD---- 144
               +  S+   S   +G+F   L L  E    G+KAD   Y++LI      GK D    
Sbjct: 242 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAK 301

Query: 145 ----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                +  N+ PD V F+ALI    + G +  A ++  EM      + PD IT  +L+  
Sbjct: 302 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMIT--RGIAPDTITYNSLIDG 359

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                 +  A +++ ++     +     Y+I IN   +    +    ++ +++ KG+IP+
Sbjct: 360 FCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPN 419

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 319
            +  + L+     +GK+ AA E+ QE  ++G+   +++Y  L+ G C N +   KALE++
Sbjct: 420 TITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE-LNKALEIF 478

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E M+  ++   +   N +I  +C+  ++     +   +   G+ P+ +TY++++    +K
Sbjct: 479 EKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 538

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             +    ML  + KEDG  P+   +  +I
Sbjct: 539 GSLSEADMLFRKMKEDGCTPDDFTYNILI 567



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 105/421 (24%), Positives = 191/421 (45%), Gaps = 21/421 (4%)

Query: 25  VSEQLHSYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++E   SY   +R G    ++++ IDL E M +   L    +   R  +     K     
Sbjct: 31  ITEAKLSYKERLRNGIVDIKVNDAIDLFESMIQSRPLPT-PIDFNRLCSAVARTKQYDLV 89

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             F K +        + T  ++++     K    AF VL    + G + D   ++TL+  
Sbjct: 90  LGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNG 149

Query: 137 CAKSGKV-------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
               G+V       D M E   +PD V  + LI      G V  A  VL +   E +   
Sbjct: 150 FCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL-VLIDRMVE-YGFQ 207

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD +T G ++     +G    A ++++ + + NIK +   Y+I I+   + G ++ A S+
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 267

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +++M  KG+  D V  S+LI    + GK +   ++L+E   + I   ++++S+L+     
Sbjct: 268 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                +A ELY  M +  + P   T N+LI   C  + L +  ++   M S G  P+ +T
Sbjct: 328 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVT 387

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMC-SRRYEKARTLNEHVL 426
           YSIL+ +  +   V+ G+ L  +    G+IPN + +   ++G C S +   A+ L + ++
Sbjct: 388 YSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMV 447

Query: 427 S 427
           S
Sbjct: 448 S 448


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 174/391 (44%), Gaps = 17/391 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQ--KAIKEAF-RFFKLVPNP 90
           L + G + E + LL +M + G+ D D V ++   N  CK    K  KE   R +++  +P
Sbjct: 413 LCKNGFLDEAVVLLNEMSKDGI-DPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSP 471

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
               ++ L+  C      + A ++   +   G   D   +  L+T+  K+GKV    E +
Sbjct: 472 NGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFM 531

Query: 151 K--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +        P+ V F+ LI   G SG   +AF V  EM    H   P   T G+L+K   
Sbjct: 532 RCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGH--HPTFFTYGSLLKGLC 589

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G +  A +  K +H         +Y   +    ++G+   A S++ +M ++ ++PD  
Sbjct: 590 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 649

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEH 321
             ++LI      GK   A    +EA+ +G +    + Y+  +     A  W+  +   E 
Sbjct: 650 TYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQ 709

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M ++   P + T NA+I       ++ KT ++L +M +    PN  TY+ILL    ++ D
Sbjct: 710 MDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKD 769

Query: 382 VEVGLMLLSQAKEDGVIPN-LVMFKCIIGMC 411
           V    +L      +G++P+ L     ++G+C
Sbjct: 770 VSTSFLLYRSIILNGILPDKLTCHSLVLGIC 800



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 183/408 (44%), Gaps = 24/408 (5%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + +YN LI    R  RI++   LL DM RK ++  ++V +    N   ++  +  A
Sbjct: 259 VDADVCTYNMLIHDLCRSNRIAKGYLLLRDM-RKRMIHPNEVTYNTLINGFSNEGKVLIA 317

Query: 81  FRF------FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
            +       F L PN    TFN L+    S  + + A ++  +++  GL      Y  L+
Sbjct: 318 SQLLNEMLSFGLSPNHV--TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLL 375

Query: 135 TTCAKSGKVD---AMFENVKPD-----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               K+ + D     +  +K +     R+ +  +I    ++G +D A  +L EM+ +   
Sbjct: 376 DGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD--G 433

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           +DPD +T  AL+      G+   A+E+   I++  +     +Y+  I  C + G  + A 
Sbjct: 434 IDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAI 493

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +Y+ M  +G   D    + L+     AGKV  A E ++   + GI    +S+  L+   
Sbjct: 494 RIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGY 553

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            N+    KA  +++ M  +   PT  T  +L+  LC G  L +  + L  + ++    +T
Sbjct: 554 GNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDT 613

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           + Y+ LL A  +  ++   + L  +  +  ++P+   +  +I G+C +
Sbjct: 614 VMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRK 661



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 92/421 (21%), Positives = 174/421 (41%), Gaps = 52/421 (12%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           +R+G I + +++   M   G        +A   +V KS + +   + F K +      P 
Sbjct: 134 LREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDV-SVWSFLKEMLKRKICPD 192

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
           ++TFN+L++V  +    E +  +++ ++++G       Y T++    K G+  A  E   
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 V  D   +N LI    +S  + + + +L +M   +  + P+ +T   L+   +N
Sbjct: 253 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM--IHPNEVTYNTLINGFSN 310

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G+V  A ++   +  + +      +   I+     G+++ A  ++  M  KG+ P EV 
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHM 322
              L+D      + + A       K  G+ VG I+Y+ ++ G C N     +A+ L   M
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNG-FLDEAVVLLNEM 429

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---- 378
               + P + T +ALI   C   +     E++  +  +GL PN I YS L+  C R    
Sbjct: 430 SKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCL 489

Query: 379 ----------------KDDVEVGLMLLSQAK---------------EDGVIPNLVMFKCI 407
                           +D     +++ S  K                DG++PN V F C+
Sbjct: 490 KEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCL 549

Query: 408 I 408
           I
Sbjct: 550 I 550



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 131/297 (44%), Gaps = 21/297 (7%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDV 176
           +V++ GL+ D  +    ITT      +        P R +   L    G+S  V  A   
Sbjct: 60  VVKQPGLETDHIVQLVCITT-----HILVRARMYDPARHILKELSLMSGKSSFVFGALMT 114

Query: 177 ---LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI-- 231
              L   N  V+ +         L++     G +  + E+++++  Y     P VYT   
Sbjct: 115 TYRLCNSNPSVYDI---------LIRVYLREGMIQDSLEIFRLMGLYGF--NPSVYTCNA 163

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            +    ++G+     S   +M K+ + PD    + LI+     G  E +  ++Q+ +  G
Sbjct: 164 ILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSG 223

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
            +  I++Y++++        ++ A+EL +HMKS  +   V T N LI  LC  +++ K  
Sbjct: 224 YAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGY 283

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            +L DM+   + PN +TY+ L+     +  V +   LL++    G+ PN V F  +I
Sbjct: 284 LLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALI 340



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 152/353 (43%), Gaps = 16/353 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R G + E I + E M  +G       ++    ++CK+ K + EA  F + + +    P  
Sbjct: 485 RMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK-VAEAEEFMRCMTSDGILPNT 543

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP 152
            +F+ L++   +S +   AF V   + + G       Y +L+    K G +    + +K 
Sbjct: 544 VSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKS 603

Query: 153 --------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                   D V++N L+TA  +SG + +A  +  EM      + PD  T  +L+      
Sbjct: 604 LHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQR--SILPDSYTYTSLISGLCRK 661

Query: 205 GQVDRAREVYKMIH-KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           G+   A    K    + N+     +YT  ++   + G W+      + M   G  PD V 
Sbjct: 662 GKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVT 721

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +A+ID     GK+E   ++L E  NQ     + +Y+ L+   S  K+   +  LY  + 
Sbjct: 722 TNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSII 781

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
              + P   T ++L+  +C+ + L   +++L      G+  +  T+++L+  C
Sbjct: 782 LNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKC 834



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/325 (19%), Positives = 140/325 (43%), Gaps = 30/325 (9%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
            P L+T+N+L+   +  KD   +F + R +                           +   
Sbjct: 752  PNLTTYNILLHGYSKRKDVSTSFLLYRSI---------------------------ILNG 784

Query: 150  VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
            + PD++  ++L+    +S  ++    +L         V+ D  T   L+  C   G+++ 
Sbjct: 785  ILPDKLTCHSLVLGICESNMLEIGLKILKAFICR--GVEVDRYTFNMLISKCCANGEINW 842

Query: 210  AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
            A ++ K++    I    +     ++  ++   ++ +  V  +M+K+G+ P+      LI+
Sbjct: 843  AFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLIN 902

Query: 270  FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                 G ++ AF + +E     I    ++ S+++ A +      +A  L   M  +KL P
Sbjct: 903  GLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVP 962

Query: 330  TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            T+++   L+   C    + + +E+   M + GL  + ++Y++L+     K D+ +   L 
Sbjct: 963  TIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELY 1022

Query: 390  SQAKEDGVIPNLVMFKCII-GMCSR 413
             + K DG + N   +K +I G+ +R
Sbjct: 1023 EEMKGDGFLANATTYKALIRGLLAR 1047



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/257 (21%), Positives = 113/257 (43%), Gaps = 3/257 (1%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           V++ LI    + G +  + ++   M   ++  +P   T  A++ +   +G+        K
Sbjct: 125 VYDILIRVYLREGMIQDSLEIFRLMG--LYGFNPSVYTCNAILGSVVKSGEDVSVWSFLK 182

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            + K  I      + I IN     G +E +  +   M K G  P  V  + ++ +    G
Sbjct: 183 EMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKG 242

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           + +AA E+L   K++G+   + +Y+ L+     +    K   L   M+   + P   T N
Sbjct: 243 RFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYN 302

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI    +  ++    ++L++M S GL PN +T++ L+     + + +  L +    +  
Sbjct: 303 TLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAK 362

Query: 396 GVIPNLVMFKCII-GMC 411
           G+ P+ V +  ++ G+C
Sbjct: 363 GLTPSEVSYGVLLDGLC 379



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 162/366 (44%), Gaps = 30/366 (8%)

Query: 58  DMDKV-YHARFFN-------VCKSQKAIKEAFRFFK---LVPNP--TLSTFNMLMSVCAS 104
           +M KV +H  FF        +CK    ++EA +F K    VP    T+    +L ++C S
Sbjct: 568 EMTKVGHHPTFFTYGSLLKGLCKGGH-LREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKS 626

Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--VDAMFE-------NVKPDRV 155
              ++       +VQ + L  D   YT+LI+   + GK  +  +F        NV P++V
Sbjct: 627 GNLAKAVSLFGEMVQRSIL-PDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKV 685

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           ++   +    ++G          +M+   H   PD +T  A++   +  G++++  ++  
Sbjct: 686 MYTCFVDGMFKAGQWKAGIYFREQMDNLGHT--PDIVTTNAMIDGYSRMGKIEKTNDLLP 743

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            +   N       Y I ++  S+  D   +  +Y  +   G++PD++   +L+     + 
Sbjct: 744 EMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESN 803

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMG-ACSNAK-NWQKALELYEHMKSIKLKPTVST 333
            +E   +IL+    +G+ V   +++ L+   C+N + NW  A +L + M S+ +     T
Sbjct: 804 MLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINW--AFDLVKVMTSLGISLDKDT 861

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            +A+++ L    +  ++  VL +M   G+ P +  Y  L+    R  D++   ++  +  
Sbjct: 862 CDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMI 921

Query: 394 EDGVIP 399
              + P
Sbjct: 922 AHKICP 927



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 116/275 (42%), Gaps = 5/275 (1%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P     NA++ +  +SG     +  L EM      + PD  T   L+      G  +++ 
Sbjct: 156 PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKR--KICPDVATFNILINVLCAEGSFEKSS 213

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            + + + K     T   Y   ++   + G ++ A  + D M  KGV  D    + LI   
Sbjct: 214 YLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDL 273

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
             + ++   + +L++ + + I    ++Y++L+   SN      A +L   M S  L P  
Sbjct: 274 CRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNH 333

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T NALI          + +++   M++ GL P+ ++Y +LL    +  + ++      +
Sbjct: 334 VTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMR 393

Query: 392 AKEDGVIPNLVMFKCII-GMCSRRY--EKARTLNE 423
            K +GV    + +  +I G+C   +  E    LNE
Sbjct: 394 MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNE 428


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 173/379 (45%), Gaps = 44/379 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           PTL TF ++M    +  + + A  +LR + + G   +  +Y TLI + +K  +V+   + 
Sbjct: 215 PTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQL 274

Query: 150 VK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           ++        PD   FN +I    +   ++ A  ++  M   +    PD IT G LM   
Sbjct: 275 LEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRM--LIRGFAPDDITYGYLMNGL 332

Query: 202 ANAGQVDRAREVY------------KMIHKYNIKGTPE-----------VYTIAINCCSQ 238
              G+VD A++++             +IH +   G  +            Y I  + C+ 
Sbjct: 333 CKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTY 392

Query: 239 T----GDWE-----FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
                G W+      A  V  DM  KG  P+    + L+D     GK++ A+ +L E   
Sbjct: 393 NSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSA 452

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            G+    + ++ L+ A        +A+E++  M     KP V T N+LI+ LC+ D++  
Sbjct: 453 DGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKH 512

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
            + +L DM S G+  NT+TY+ L+ A  R+ +++    L+++    G   + + +  +I 
Sbjct: 513 ALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIK 572

Query: 409 GMC-SRRYEKARTLNEHVL 426
           G+C +   +KAR+L E +L
Sbjct: 573 GLCRAGEVDKARSLFEKML 591



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 176/412 (42%), Gaps = 51/412 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L +  RI+E   ++  M  +G    D  Y      +CK  + +  A   F  +P P +  
Sbjct: 297 LCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGR-VDAAKDLFYRIPKPEIVI 355

Query: 95  FNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           FN L+    +    + A  VL  +V   G+  D   Y +LI    K G V    E     
Sbjct: 356 FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDM 415

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                KP+   +  L+    + G +D A++VL EM+A+   + P+ +    L+ A     
Sbjct: 416 RNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSAD--GLKPNTVGFNCLISAFCKEH 473

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           ++  A E+++ + +   K  P+VYT    I+   +  + + A  +  DM  +GV+ + V 
Sbjct: 474 RIPEAVEIFREMPRKGCK--PDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVT 531

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM- 322
            + LI+     G+++ A +++ E   QG  +  I+Y+SL+     A    KA  L+E M 
Sbjct: 532 YNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKML 591

Query: 323 -------------------------------KSIKLK---PTVSTMNALITALCDGDQLP 348
                                          K + L+   P + T N+LI  LC   ++ 
Sbjct: 592 RDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIE 651

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
             + +   +++ G+ P+T+T++ L+    +   V    +LL +  EDG +PN
Sbjct: 652 DGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 703



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 152/368 (41%), Gaps = 54/368 (14%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           ++ +   + +YN LI    ++G +   +++L DM  KG       Y       CK  K I
Sbjct: 382 SYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK-I 440

Query: 78  KEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            EA+     +      P    FN L+S          A ++ R +   G K D   + +L
Sbjct: 441 DEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500

Query: 134 ITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I+   +  ++        D + E V  + V +N LI A  + G +  A  ++ EM  +  
Sbjct: 501 ISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 560

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
           P+D   IT  +L+K    AG+VD+AR                                  
Sbjct: 561 PLD--EITYNSLIKGLCRAGEVDKAR---------------------------------- 584

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
            S+++ M + G  P  +  + LI+    +G VE A E  +E   +G +  I++++SL+  
Sbjct: 585 -SLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLING 643

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
              A   +  L ++  +++  + P   T N L++ LC G  +     +L +    G  PN
Sbjct: 644 LCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 703

Query: 366 TITYSILL 373
             T+SILL
Sbjct: 704 HRTWSILL 711



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 110/254 (43%), Gaps = 7/254 (2%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVY 214
           V+  LI   G +G       +L +M  E   V  + + I ++M+    AG   +  R + 
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDE-GIVFKESLFI-SIMRDYDKAGFPGQTTRLML 170

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           +M + Y+ + T + Y + +         + A +V+ DM  + + P       ++      
Sbjct: 171 EMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAV 230

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
            ++++A  +L++    G     + Y +L+ + S      +AL+L E M  +   P   T 
Sbjct: 231 NEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETF 290

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N +I  LC  D++ +  ++++ M   G  P+ ITY  L+    +   V+    L  +  +
Sbjct: 291 NDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK 350

Query: 395 DGVIPNLVMFKCII 408
               P +V+F  +I
Sbjct: 351 ----PEIVIFNTLI 360



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 138/372 (37%), Gaps = 56/372 (15%)

Query: 81  FRFFKLVPNP-TLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCA 138
           F+ +KL+  P  +ST   L S   S      +F V + L+ + G   + K    L+    
Sbjct: 79  FQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMK 138

Query: 139 KSGKV--DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
             G V  +++F ++  D           G  G   R   ++ EM   V+  +P   +   
Sbjct: 139 DEGIVFKESLFISIMRD-------YDKAGFPGQTTR---LMLEMR-NVYSCEPTFKSYNV 187

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           +++   +      A  V+  +    I  T   + + +       + + A S+  DMTK G
Sbjct: 188 VLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHG 247

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQE-----------------------------A 287
            +P+ V    LI       +V  A ++L+E                             A
Sbjct: 248 CVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAA 307

Query: 288 KN------QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           K       +G +   I+Y  LM           A +L+  +     KP +   N LI   
Sbjct: 308 KMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPEIVIFNTLIHGF 363

Query: 342 CDGDQLPKTMEVLSDM-KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
               +L     VLSDM  S G+ P+  TY+ L+    ++  V + L +L   +  G  PN
Sbjct: 364 VTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPN 423

Query: 401 LVMFKCII-GMC 411
           +  +  ++ G C
Sbjct: 424 VYSYTILVDGFC 435



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 17/196 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+G I E   L+ +M  +G    +  Y++    +C++ +  K    F K+
Sbjct: 531 TYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 590

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + +   P+  + N+L++    S   E A +  + +   G   D   + +LI    ++G++
Sbjct: 591 LRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 650

Query: 144 D---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +    MF     E + PD V FN L++   + G V  A  +L E   +     P+H T  
Sbjct: 651 EDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIED--GFVPNHRTWS 708

Query: 196 ALMKACANAGQVDRAR 211
            L+++      +DR R
Sbjct: 709 ILLQSIIPQETLDRRR 724


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 177/387 (45%), Gaps = 15/387 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L + GR  E     + M RKG+      Y     +   ++ A+ E   F  L+    L
Sbjct: 312 NYLCKNGRCREARFFFDSMIRKGIKPKVSTY-GILIHGYATKGALSEMHSFLDLMVENGL 370

Query: 93  S----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
           S     FN+  S  A     + A  +   +++ GL  +   Y  LI    K G+VD    
Sbjct: 371 SPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEV 430

Query: 145 ----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                + E V P+ VVFN+L+         +RA +++ EM  +   + P+ +    L+  
Sbjct: 431 KFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQ--GICPNAVFFNTLICN 488

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             N G+V   R +  ++    ++     YT  I+    TG  + A  V+D M   G+ P 
Sbjct: 489 LCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPT 548

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           EV  + L+     A +++ A+ + +E   +G++ G+++Y++++      K + +A ELY 
Sbjct: 549 EVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYL 608

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           +M +   K  + T N ++  LC  + + +  ++   + S GL  N IT++I++ A  +  
Sbjct: 609 NMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGG 668

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCI 407
             E  + L +    +G++PN+V ++ +
Sbjct: 669 RKEDAMDLFAAIPANGLVPNVVTYRLV 695



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 178/412 (43%), Gaps = 17/412 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N    +G++ +  +L  +M  +G+      Y      +CK+Q   +    F +++ N   
Sbjct: 207 NGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFK 266

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------- 142
           P   T+N L+    S    +   Q+L  +   GLK DC  Y +L+    K+G+       
Sbjct: 267 PNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFF 326

Query: 143 VDAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D+M  + +KP    +  LI      GA+      L  M    + + PDH        A 
Sbjct: 327 FDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVE--NGLSPDHHIFNIFFSAY 384

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A  G +D+A +++  + ++ +      Y   I+   + G  + A   ++ M  +GV P+ 
Sbjct: 385 AKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNI 444

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  ++L+       K E A E++ E  +QGI    + +++L+    N     +   L + 
Sbjct: 445 VVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDL 504

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+ + ++P   +   LI+  C   +  +  +V   M S+GL P  +TY+ LL        
Sbjct: 505 MEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASR 564

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTLNEHVLSFNSG 431
           ++    L  +    GV P +V +  I+     ++R+ +A+ L  +++  NSG
Sbjct: 565 IDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMI--NSG 614



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 149/362 (41%), Gaps = 24/362 (6%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVL----RLVQEAGLKADCKL--YTTLITTCAKSGKVD 144
           ++  FN L++  + ++ S  +   +    R+V+E   K    L  Y+ LI    + G ++
Sbjct: 48  SVRAFNHLLTAVSRARCSSASELAVSHFNRMVRECSDKVAPNLCTYSILIGRFCRMGHLE 107

Query: 145 AMFENV--------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
             F           + D +  N L+        V  A DVL +   E+  + PD ++   
Sbjct: 108 HGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLLQRMPELGCM-PDTVSYTI 166

Query: 197 LMKACANAGQVDRAREVYKMI-HKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMT 253
           L+K   N  + + A E+  M+   +  +  P V  Y+I IN     G  +   +++ +M 
Sbjct: 167 LLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMI 226

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            +G+ PD V  + +ID    A   + A  + Q+  + G      +Y+ L+    +   W+
Sbjct: 227 DRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWK 286

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           + +++ E M +  LKP   T  +L+  LC   +  +       M   G+ P   TY IL+
Sbjct: 287 EVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILI 346

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII------GMCSRRYEKARTLNEHVLS 427
                K  +      L    E+G+ P+  +F          GM  +  +    + +H LS
Sbjct: 347 HGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLS 406

Query: 428 FN 429
            N
Sbjct: 407 PN 408



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/383 (21%), Positives = 149/383 (38%), Gaps = 55/383 (14%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DA 145
           P L T+++L+         E  F    L+ + G + D      L+       +V    D 
Sbjct: 88  PNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDV 147

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP--VDPDHITIGALM 198
           + + +      PD V +  L+         + A ++L  M A+ H     P+ ++   ++
Sbjct: 148 LLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELL-HMMADDHGRRCPPNVVSYSIVI 206

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                 GQVD+   ++  +    I      YT  I+   +   ++ A  V+  M   G  
Sbjct: 207 NGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFK 266

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+    + LI      GK +   ++L+E   +G+     +Y SL+         ++A   
Sbjct: 267 PNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFF 326

Query: 319 YEHMKSIKLKPTVST-----------------------------------MNALITALCD 343
           ++ M    +KP VST                                    N   +A   
Sbjct: 327 FDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAK 386

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CE--RKDDVEVGLMLLSQAKEDGVIPN 400
              + K M++ + M+  GL PN + Y  L+ A C+  R DD EV     +Q   +GV PN
Sbjct: 387 CGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVK---FNQMINEGVTPN 443

Query: 401 LVMFKCII-GMCS-RRYEKARTL 421
           +V+F  ++ G+C+  ++E+A  L
Sbjct: 444 IVVFNSLVYGLCTVDKWERAEEL 466



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 119/299 (39%), Gaps = 17/299 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L   GR+ E   L++ ME  G+      Y       C + +  +    F  +V    +PT
Sbjct: 489 LCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPT 548

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT--------TCAKSGKV 143
             T+N L+    S+   + A+ + R +   G+      Y T++         + AK   +
Sbjct: 549 EVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYL 608

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKAC 201
           + +    K D   +N ++    +S  VD AF +   + ++   ++     I IGAL+K  
Sbjct: 609 NMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKG- 667

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+ + A +++  I    +      Y +      + G  E   S++  M K G  P+ 
Sbjct: 668 ---GRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNS 724

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
             L+AL+    H G +  A   L +   +  SV   + S LM   ++ +    A  L E
Sbjct: 725 QMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLMSIFTSDEYQHHAKSLPE 783


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 170/363 (46%), Gaps = 22/363 (6%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R F+ +P P + TFN+++       +   A  +   ++E G   D   + +LI    K G
Sbjct: 178 RLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCG 237

Query: 142 KVDAMFENV--------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++D + + V        K D V +NALI    + G ++ A+   A M  E   V  + +T
Sbjct: 238 ELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKRE--GVMANVVT 295

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYD 250
               + A    G V   RE  K+  +  ++G       YT  I+   + G  + A  + D
Sbjct: 296 FSTFVDAFCKEGLV---REAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLD 352

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M ++GV  + V  + L+D      KV  A ++L+  +  G+    + Y++L+      K
Sbjct: 353 EMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNK 412

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
           N +KAL L   MK+  L+  +S   ALI  LC+  +L +   +L+ M   GL PN I Y+
Sbjct: 413 NSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYT 472

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFN 429
            ++ AC +   V   + +L +  + G  PN++ +  +I G+C     KA +++E +  FN
Sbjct: 473 TMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLC-----KAGSIDEAISHFN 527

Query: 430 SGR 432
             R
Sbjct: 528 KMR 530



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/378 (23%), Positives = 170/378 (44%), Gaps = 21/378 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA------IKEAFRFFKLVPNP 90
           ++G + E + L   M  +G+   +  Y       CK+ +       + E  R  + VP  
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVR--QGVPLN 362

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDAMF 147
            ++   ++  +C   K +E A  VLR++++AG++A+  LYTTLI        S K   + 
Sbjct: 363 VVTYTVLVDGLCKERKVAE-AEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLL 421

Query: 148 ENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
             +K      D  ++ ALI        +D A  +L +M+     ++P++I    +M AC 
Sbjct: 422 SEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES--GLEPNYIIYTTMMDACF 479

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            +G+V  A  + + I     +     Y   I+   + G  + A S ++ M   G+ P+  
Sbjct: 480 KSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQ 539

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +AL+D     G +  A ++  E  ++G+S+  + Y++L+       N   A  L   M
Sbjct: 540 AYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKM 599

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               L+  +      I+  C+ + +P+  EV S+M   G+ P+   Y+ L+   ++  ++
Sbjct: 600 IDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNL 659

Query: 383 EVGLMLLSQAKEDGVIPN 400
           E  + L  Q + + V+P+
Sbjct: 660 EEAISL--QDEMERVLPS 675



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 131/327 (40%), Gaps = 45/327 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P + TFN L+       + +   Q++  ++ +G KAD   Y  LI    K G+++  +  
Sbjct: 221 PDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGY 280

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E V  + V F+  + A  + G V  A  + A+M   V  +  +  T   L+   
Sbjct: 281 FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQM--RVRGMALNEFTYTCLIDGT 338

Query: 202 ANAGQVD-----------------------------------RAREVYKMIHKYNIKGTP 226
             AG++D                                    A +V +M+ K  ++   
Sbjct: 339 CKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANE 398

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
            +YT  I+      + E A  +  +M  KG+  D     ALI    +  K++ A  +L +
Sbjct: 399 LLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTK 458

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               G+    I Y+++M AC  +    +A+ + + +     +P V T  ALI  LC    
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS 518

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILL 373
           + + +   + M+ LGL PN   Y+ L+
Sbjct: 519 IDEAISHFNKMRDLGLDPNVQAYTALV 545


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 181/382 (47%), Gaps = 26/382 (6%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106
           L  DM R  L      ++    ++C + K  + A    + +P P   T+N +++   S  
Sbjct: 101 LFADMFRLRLPLCTTTFNIMLRHLCSAGKPAR-ALELLRQMPRPNAVTYNTVIAGFCSRG 159

Query: 107 DSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAMFE---------NVKPDRVV 156
             + A  ++R ++E  G+  +   Y T+I+   K G+VD   +          VKP+ V+
Sbjct: 160 RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 219

Query: 157 FNALITACGQSGAVDRAF---DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           +NALI      G +D A    D + E    +        T   L+ A    G   R  E 
Sbjct: 220 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVA-----TYNLLVHALFMDG---RGTEA 271

Query: 214 YKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           Y+++ +   KG  P+V+T  I IN   + G+ + A  ++++M+++GV    V  +ALI  
Sbjct: 272 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYA 331

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G+V+   ++  EA  +GI   ++ Y++L+ + S + N  +A E+   M+  ++ P 
Sbjct: 332 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 391

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
             T N L+  LC   ++ +  +++ +M   G+ P+ +TY+ L+     K DV+  L + +
Sbjct: 392 DVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRN 451

Query: 391 QAKEDGVIPNLVMFKCII-GMC 411
           +    G  P L+ +  +I G+C
Sbjct: 452 EMMNKGFNPTLLTYNALIQGLC 473



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 164/391 (41%), Gaps = 36/391 (9%)

Query: 10  QFPYPNGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDM-ERKGLLDMDKVYH 64
           Q P PN               +YN +I     +GR+   +D++ +M ER G+      Y 
Sbjct: 139 QMPRPNAV-------------TYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYG 185

Query: 65  ARFFNVCKSQKAIKEAFRFF-----KLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLV 118
                 CK  + + EA + F     K    P    +N L+   C   K         R+V
Sbjct: 186 TVISGWCKVGR-VDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMV 244

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAV 170
            E G+      Y  L+      G+    +E V+        PD   +N LI    + G V
Sbjct: 245 -ERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNV 303

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
            +A ++   M+     V    +T  AL+ A +  GQV    +++    +  I+    +Y 
Sbjct: 304 KKALEIFENMSR--RGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 361

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             IN  S +G+ + A  +  +M KK + PD+V  + L+      G+V+ A +++ E   +
Sbjct: 362 ALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTER 421

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           GI   +++Y++L+   S   + + AL +   M +    PT+ T NALI  LC   Q    
Sbjct: 422 GIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDA 481

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDD 381
             ++ +M   G+ P+  TY  L+     +D+
Sbjct: 482 ENMVKEMVENGITPDDSTYISLIEGLTTEDE 512



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 103/224 (45%), Gaps = 6/224 (2%)

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   +++   +AG+  RA E+ + + + N        T+    CS+ G  + A  +  +M
Sbjct: 116 TFNIMLRHLCSAGKPARALELLRQMPRPN---AVTYNTVIAGFCSR-GRVQAALDIMREM 171

Query: 253 TKKG-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAK 310
            ++G + P++     +I      G+V+ A ++  E   +G +    + Y++L+G   +  
Sbjct: 172 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 231

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
               AL   + M    +  TV+T N L+ AL    +  +  E++ +M   GL P+  TY+
Sbjct: 232 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYN 291

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           IL+    ++ +V+  L +       GV   +V +  +I   S++
Sbjct: 292 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 335



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 106/253 (41%), Gaps = 37/253 (14%)

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           +  +    K+  + +   S   L+ A  +A     A  L+  M  ++L    +T N ++ 
Sbjct: 67  SLRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLR 122

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVI 398
            LC   +  + +E+L  M      PN +TY+ ++     +  V+  L ++ + +E  G+ 
Sbjct: 123 HLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIA 178

Query: 399 PNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 456
           PN   +  +I G C   R ++A  + + +L+    +P+           V   A++ G  
Sbjct: 179 PNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPE----------AVMYNALIGGYC 228

Query: 457 PTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCS--LIDGFGEYDPRAFSL 514
              ++ + +L           R+R+VE  GV+      + L     +DG G     A+ L
Sbjct: 229 DQGKLDTALL----------YRDRMVER-GVAMTVATYNLLVHALFMDGRGT---EAYEL 274

Query: 515 LEEAASFGIVPCV 527
           +EE    G+ P V
Sbjct: 275 VEEMGGKGLAPDV 287


>gi|159466206|ref|XP_001691300.1| protein with PPR repeats [Chlamydomonas reinhardtii]
 gi|158279272|gb|EDP05033.1| protein with PPR repeats [Chlamydomonas reinhardtii]
          Length = 1156

 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 179/423 (42%), Gaps = 71/423 (16%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFF--NVCKSQKAIKEAFRFFKL----VP 88
           L ++G     + LL+++ +  L  + K +H   F   VC + KA K A  F K+    V 
Sbjct: 154 LSKRGEFDTLLRLLQELNKPMLEVVCKRWHYSSFIEEVCLTMKA-KPAVVFAKIAAPYVS 212

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P  + F  ++  CA  +D +    V+ L +++G+  D ++ TTLI  C   G VD  + 
Sbjct: 213 KPA-ALFMAVLKACARCRDLDAGMTVVELARKSGVTVDVQMMTTLIKVCKAVGNVDKAYR 271

Query: 149 --------NVKPDRVVFNALITAC------------------------------------ 164
                    ++ D  V+ ALI  C                                    
Sbjct: 272 VYLEMRAAQLRIDSHVYGALIATCAEAMKRDLTVVHERKDQYVLLERAFQYVADAEAAGV 331

Query: 165 --------------GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
                         G+SG ++RAF+VL  M  +   +     T G+L+++C  A Q ++A
Sbjct: 332 TLQAPVWNSLMVCAGRSGELNRAFEVLTMM--QQRGIGASATTYGSLIESCVCARQPEKA 389

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCC--SQTGDWEFACSVYDDMTK-KGVIPDEVFLSAL 267
             V+++      +   ++YT A++ C     G W+ A ++Y  + +   V PD+ F +  
Sbjct: 390 LRVFEVALHKGFESEVKLYTQALSACMLPFPGAWDRAQAIYSALQRCTSVRPDKKFFACF 449

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           +  AG  G++E  FE+L E   +GI     S S ++ AC +  N   A  +Y+      +
Sbjct: 450 MAVAGRCGRMEVVFELLTEMAAEGIRPSSTSVSGIIHACLDQGNVALARRVYDLCAKQSV 509

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P  S  N ++       +  + + +L DM + G  PN  TY I++ ACE  D   +   
Sbjct: 510 YPVPSQFNRMMDVYASEFRFGEVVSLLCDMVAAGRQPNLNTYRIIINACEVTDQAGLAFQ 569

Query: 388 LLS 390
           + +
Sbjct: 570 VFA 572


>gi|440800754|gb|ELR21789.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
           [Acanthamoeba castellanii str. Neff]
          Length = 559

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 157/340 (46%), Gaps = 21/340 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--- 146
           P +ST+ +L+     + D    +Q    ++E GL+ +  +YT++I T  K G V AM   
Sbjct: 131 PGMSTYTILIDAWGKAGDLRRMWQAWEDMREQGLRPNVVVYTSVIATLGKLGDVAAMERT 190

Query: 147 --------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP----DHITI 194
                    + V+P+R  +NA++ + GQ   +D+   ++  M A     DP    D+ T 
Sbjct: 191 FAEMQRSSGDGVEPNRTTYNAMVHSYGQQQMMDKMEALVERMRA-----DPGLGLDNFTH 245

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            A++ A + AG+VD+A E +  I     + +   +T  ++     G  +      D M +
Sbjct: 246 SAVVAAWSRAGRVDKALEAFDSIAATGGQPSLHAWTAILHMLGTAGRSDEMLRTLDKMKR 305

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            GV P     + +I+  G A  + +  +  +  +  G++  + +Y++L+   +      +
Sbjct: 306 LGVKPSTAVYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKAVE 365

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A + Y  MK   L+PT+ T+ +L+ A    DQ  K + ++S MK  G  P+ + +++L+ 
Sbjct: 366 AEKFYVLMKREGLQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRAPDNVVFNLLID 425

Query: 375 ACERKDDVEVGLMLLSQA-KEDGVIPNLVMFKCIIGMCSR 413
              R    E    +L  A KE G+      F  +I   +R
Sbjct: 426 TYGRMGKPEEAEKVLCGAMKEYGIALETNNFTSVIEAWAR 465



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/256 (19%), Positives = 103/256 (40%), Gaps = 39/256 (15%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L++    AG   R  +V + + +  ++     YTI I+   + GD       ++DM ++G
Sbjct: 104 LLQGYGRAGDRQRLAQVQRDMREVGVRPGMSTYTILIDAWGKAGDLRRMWQAWEDMREQG 163

Query: 257 VIPDEVFLSALIDFAGHAGKV---EAAFEILQEAKNQGISVGIISY-------------- 299
           + P+ V  +++I   G  G V   E  F  +Q +   G+     +Y              
Sbjct: 164 LRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMVHSYGQQQMMD 223

Query: 300 ----------------------SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
                                 S+++ A S A    KALE ++ + +   +P++    A+
Sbjct: 224 KMEALVERMRADPGLGLDNFTHSAVVAAWSRAGRVDKALEAFDSIAATGGQPSLHAWTAI 283

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           +  L    +  + +  L  MK LG+ P+T  Y+ ++ A  +  ++   +      + DGV
Sbjct: 284 LHMLGTAGRSDEMLRTLDKMKRLGVKPSTAVYNTIINAFGKARNIHSMMDTFKAMRRDGV 343

Query: 398 IPNLVMFKCIIGMCSR 413
             ++  +  +I   ++
Sbjct: 344 AADVKTYNTLIDTWAK 359



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/263 (19%), Positives = 109/263 (41%), Gaps = 17/263 (6%)

Query: 37  RQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           R GR+ + ++  + +   G    L     + H       +S + ++   +  +L   P+ 
Sbjct: 254 RAGRVDKALEAFDSIAATGGQPSLHAWTAILHM-LGTAGRSDEMLRTLDKMKRLGVKPST 312

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDA------ 145
           + +N +++    +++        + ++  G+ AD K Y TLI T AK+GK V+A      
Sbjct: 313 AVYNTIINAFGKARNIHSMMDTFKAMRRDGVAADVKTYNTLIDTWAKTGKAVEAEKFYVL 372

Query: 146 -MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
              E ++P      +L+ A  ++   ++   +++ M  E     PD++    L+      
Sbjct: 373 MKREGLQPTMYTIASLMDAYTRADQFEKVLRLISRMKKEGRA--PDNVVFNLLIDTYGRM 430

Query: 205 GQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM-TKKGVIPDEV 262
           G+ + A +V    + +Y I      +T  I   ++ G+ + A      M T     PD  
Sbjct: 431 GKPEEAEKVLCGAMKEYGIALETNNFTSVIEAWARNGNLDKAEEWLHRMNTDYATKPDIK 490

Query: 263 FLSALIDFAGHAGKVEAAFEILQ 285
            L+ L+ F   A  V+    ++ 
Sbjct: 491 TLTTLLSFCIPAADVKRGRRVIH 513



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
           V +  +  L+     A + Q+  ++   M+ + ++P +ST   LI A      L +  + 
Sbjct: 96  VPLAVFDVLLQGYGRAGDRQRLAQVQRDMREVGVRPGMSTYTILIDAWGKAGDLRRMWQA 155

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDV---EVGLMLLSQAKEDGVIPNLVMFKCII 408
             DM+  GL PN + Y+ ++    +  DV   E     + ++  DGV PN   +  ++
Sbjct: 156 WEDMREQGLRPNVVVYTSVIATLGKLGDVAAMERTFAEMQRSSGDGVEPNRTTYNAMV 213


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 186/399 (46%), Gaps = 55/399 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN ++    ++G+++E  DLL DM+  GLL                             
Sbjct: 249 SYNTILDVLCKKGKLNEARDLLLDMKNNGLL----------------------------- 279

Query: 87  VPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
              P  +TFN+L+S  C      E A QV+ L+ +  +  D   Y  LI    K GK+D 
Sbjct: 280 ---PNRNTFNILVSGYCKLGWLKEAA-QVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDE 335

Query: 146 MF------ENVK--PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
            F      EN+K  PD V +N LI  C    +  + F+++ +M  E   V P+ +T   +
Sbjct: 336 AFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKM--EGKGVKPNAVTYNVV 393

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +K     G++D A    + + +         +   IN   + G    A  + D+M++KG+
Sbjct: 394 VKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGL 453

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL-MGACSNAKNWQKAL 316
             + V L+ ++       K++ A+++L  A  +G  V  +SY +L MG   + K+ + A+
Sbjct: 454 KMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVE-AM 512

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +L++ MK  ++ P++ T N +I  LC   +  ++++ L+++   GL P+  TY+ +++  
Sbjct: 513 KLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGY 572

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCS 412
            R+  VE      ++  +    P+L  F C I   G+C+
Sbjct: 573 CREGQVEKAFQFHNKMVKKSFKPDL--FTCNILLRGLCT 609



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 162/370 (43%), Gaps = 21/370 (5%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           ++V   + +YN LI    + G+I E   L ++ME   LL  D V +    N C    +  
Sbjct: 311 NNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLP-DVVTYNTLINGCFDCSSSL 369

Query: 79  EAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           + F     +      P   T+N+++         + A   LR ++E+G   DC  + TLI
Sbjct: 370 KGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLI 429

Query: 135 TTCAKSGKVDAMF--------ENVKPDRVVFNALI-TACGQSGAVDRAFDVLAEMNAEVH 185
               K+G++   F        + +K + V  N ++ T CG+   +D A+ +L+  +   +
Sbjct: 430 NGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGER-KLDDAYKLLSSASKRGY 488

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            VD   ++ G L+      G+   A +++  + +  I  +   Y   I     +G  + +
Sbjct: 489 FVD--EVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQS 546

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
               +++ + G++PDE   + +I      G+VE AF+   +   +     + + + L+  
Sbjct: 547 IDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRG 606

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
                   KAL+L+    S        T N +I+ LC  D+  +  ++L++M+   L P+
Sbjct: 607 LCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPD 666

Query: 366 TITYSILLVA 375
             TY+ +L A
Sbjct: 667 CYTYNAILSA 676



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 158/373 (42%), Gaps = 20/373 (5%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------D 144
           +TFN+L+  C        A  ++  +++     D   Y T++    K GK+        D
Sbjct: 213 NTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLD 272

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKAC 201
                + P+R  FN L++   + G +  A    D++A+ N     V PD  T   L+   
Sbjct: 273 MKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNN-----VLPDVWTYNMLIGGL 327

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              G++D A  +   +   N+K  P+V  Y   IN C           + D M  KGV P
Sbjct: 328 CKDGKIDEAFRLKDEME--NLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKP 385

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V  + ++ +    GK++ A   L++ +  G S   +++++L+     A    +A  + 
Sbjct: 386 NAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMM 445

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M    LK    T+N ++  LC   +L    ++LS     G   + ++Y  L++   + 
Sbjct: 446 DEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKD 505

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 439
                 + L  + KE  +IP+++ +  +IG      +  +++++      SG    E  +
Sbjct: 506 GKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTY 565

Query: 440 TSLALMVYREAIV 452
            ++ L   RE  V
Sbjct: 566 NTIILGYCREGQV 578



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 113/266 (42%), Gaps = 3/266 (1%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           VK +   FN LI  C     +  A  ++ +M        PD+++   ++      G+++ 
Sbjct: 208 VKVNTNTFNILIYGCCIENKLSEAIGLIGKMKD--FSCFPDNVSYNTILDVLCKKGKLNE 265

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           AR++   +    +      + I ++   + G  + A  V D M +  V+PD    + LI 
Sbjct: 266 ARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIG 325

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                GK++ AF +  E +N  +   +++Y++L+  C +  +  K  EL + M+   +KP
Sbjct: 326 GLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKP 385

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
              T N ++       ++      L  M+  G  P+ +T++ L+    +   +     ++
Sbjct: 386 NAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMM 445

Query: 390 SQAKEDGVIPNLVMFKCII-GMCSRR 414
            +    G+  N V    I+  +C  R
Sbjct: 446 DEMSRKGLKMNSVTLNTILHTLCGER 471



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/268 (21%), Positives = 115/268 (42%), Gaps = 11/268 (4%)

Query: 147 FENVKPDRVVFNALI---TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA- 202
           F+ V+  RV+ +  I    AC +     + F+ +  ++     + P+ +T   L+ A   
Sbjct: 132 FKKVQSLRVILDTSIGAYVACNRPHHAAQIFNRMKRLH-----LKPNLLTCNTLINALVR 186

Query: 203 --NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             +   V  ++ ++  + K  +K     + I I  C        A  +   M      PD
Sbjct: 187 YPSKPSVYLSKAIFSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPD 246

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + ++D     GK+  A ++L + KN G+     +++ L+         ++A ++ +
Sbjct: 247 NVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVID 306

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    + P V T N LI  LC   ++ +   +  +M++L L P+ +TY+ L+  C    
Sbjct: 307 LMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCS 366

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
               G  L+ + +  GV PN V +  ++
Sbjct: 367 SSLKGFELIDKMEGKGVKPNAVTYNVVV 394



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 122/281 (43%), Gaps = 50/281 (17%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-K 85
           +YN +I      G+  + ID L ++   GL+  +  Y+      C+ +  +++AF+F  K
Sbjct: 529 TYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCR-EGQVEKAFQFHNK 587

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +V     P L T N+L+                 L  E  L    KL+ T I   +K   
Sbjct: 588 MVKKSFKPDLFTCNILLR---------------GLCTEGMLDKALKLFNTWI---SKGKA 629

Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +DA         V +N +I+   +    + AFD+LAEM  E   + PD  T  A++ A A
Sbjct: 630 IDA---------VTYNTIISGLCKEDRFEEAFDLLAEM--EEKKLGPDCYTYNAILSALA 678

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           +AG++  A E    I +   +G  +  TI++N   +           D        P+ V
Sbjct: 679 DAGRMKEAEEFMSRIVE---QGKLQDQTISLNK-RKIESSSETSQESD--------PNSV 726

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
             S  I+     GK + A  ++QE+  +GI++   +Y SLM
Sbjct: 727 TFSEQINELCTQGKYKDAMHMVQESTQKGITLHKSTYISLM 767



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 77/169 (45%), Gaps = 5/169 (2%)

Query: 245 ACSVYDDMTKKGVIPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
           A  +++ M +  + P+       ++AL+ +      V  +  I  +    G+ V   +++
Sbjct: 158 AAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPS-VYLSKAIFSDVIKLGVKVNTNTFN 216

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
            L+  C       +A+ L   MK     P   + N ++  LC   +L +  ++L DMK+ 
Sbjct: 217 ILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNN 276

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           GL PN  T++IL+    +   ++    ++    ++ V+P++  +  +IG
Sbjct: 277 GLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIG 325



 Score = 46.2 bits (108), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 105/233 (45%), Gaps = 27/233 (11%)

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK---TMEVLSDMKSLGLCPNTITYSI 371
           A +++  MK + LKP + T N LI AL      P    +  + SD+  LG+  NT T++I
Sbjct: 158 AAQIFNRMKRLHLKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNTNTFNI 217

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKARTL-----NEH 424
           L+  C  ++ +   + L+ + K+    P+ V +  I+  +C + +  +AR L     N  
Sbjct: 218 LIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNG 277

Query: 425 VL----SFN---SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADI 477
           +L    +FN   SG  ++   W   A  V         +P V   + ++G L      D 
Sbjct: 278 LLPNRNTFNILVSGYCKL--GWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDE 335

Query: 478 RERL---VENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVP 525
             RL   +ENL +  D +  +   +LI+G  +     + F L+++    G+ P
Sbjct: 336 AFRLKDEMENLKLLPDVVTYN---TLINGCFDCSSSLKGFELIDKMEGKGVKP 385


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 169/358 (47%), Gaps = 19/358 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------- 142
           P  + +N L+S  + +KD   AF+ L  + +         YT ++    K+G+       
Sbjct: 43  PDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKL 102

Query: 143 VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +D M +    P+   +N ++    +   +D A  +L EM   V    PD +T  + +K  
Sbjct: 103 LDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEM--AVRGYFPDVVTYNSFIKGL 160

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               +VD AR   K + +  +  TP+V  YT  IN   ++GD + A  + D MT +G  P
Sbjct: 161 CKCDRVDEAR---KFLARMPV--TPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTP 215

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  S+LID     G+VE A  +L      G    +++Y+SL+GA     +  KA ++ 
Sbjct: 216 DVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDML 275

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M+     P V + NA I  LC  +++ K   V   M   G  PN  +YS+L+    +K
Sbjct: 276 VEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKK 335

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQI 435
            +++  + L+ QA+E   I +++++  ++ G+C   R+++A  L   VL      P +
Sbjct: 336 KELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDV 393



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 181/397 (45%), Gaps = 18/397 (4%)

Query: 26  SEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  +++YN ++     + ++ E   +LE+M  +G       Y++    +CK  + + EA 
Sbjct: 112 SPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDR-VDEAR 170

Query: 82  RFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +F   +P  P + ++  +++    S D + A ++L  +   G   D   Y++LI    K 
Sbjct: 171 KFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKG 230

Query: 141 GKV-------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+V       D+M +   +P+ V +N+L+ A  + G + +A D+L EM  E     PD +
Sbjct: 231 GEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEM--ERRGFTPDVV 288

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +  A +     A +V +A+ V+  + +         Y++ +    +  + + A ++ +  
Sbjct: 289 SYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQA 348

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKN 311
            +K  I D +  + L+D     G+ + A  +  +  ++ I    +  Y+ ++ +    + 
Sbjct: 349 REKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQ 408

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             KAL++++ M        V T N L+  LC  D+L     +L  M   G  P+ +TY  
Sbjct: 409 IDKALQIHKQMLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGT 467

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L+ A  +       L L  +A + G +P++V +  +I
Sbjct: 468 LVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALI 504



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 115/249 (46%), Gaps = 6/249 (2%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD  T   L++    + Q+++AR++   + +        +Y   I+  S+  D+  A   
Sbjct: 8   PDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 67

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
             +M K   +P  V  + ++D    AG+ + A ++L E +++G S  I +Y+ ++     
Sbjct: 68  LAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE 127

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            +   +A ++ E M      P V T N+ I  LC  D++ +  + L+ M    + P+ ++
Sbjct: 128 ERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMP---VTPDVVS 184

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
           Y+ ++    +  D++    +L Q    G  P++V +  +I G C     E+A  L + +L
Sbjct: 185 YTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSML 244

Query: 427 SFNSGRPQI 435
                RP +
Sbjct: 245 KLGC-RPNM 252



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 115/283 (40%), Gaps = 42/283 (14%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M  K   PD    + L+     + ++E A ++L   K  G       Y++L+   S AK+
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           + +A +    M      PTV T   ++  LC   +    +++L +M+  G  PN  TY++
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 372 LLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSF 428
           ++   CE +   E   ML   A   G  P++V +   I G+C   R ++AR        F
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVR-GYFPDVVTYNSFIKGLCKCDRVDEAR-------KF 172

Query: 429 NSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE---NL 485
            +  P                       P V   + V+  L    + D   R+++   N 
Sbjct: 173 LARMP---------------------VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNR 211

Query: 486 GVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP 525
           G + D +  S   SLIDGF   GE + RA  LL+     G  P
Sbjct: 212 GCTPDVVTYS---SLIDGFCKGGEVE-RAMGLLDSMLKLGCRP 250



 Score = 38.9 bits (89), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 56/270 (20%), Positives = 103/270 (38%), Gaps = 27/270 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT--- 91
           L + GR  E   L   +  + + + D  ++    +    ++ I +A +  K +       
Sbjct: 367 LCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCN 426

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
           + T+N+L+  +C   + S+    +L +V E G   D   Y TL+    K GK  A  E  
Sbjct: 427 VVTWNILVHGLCVDDRLSDAETMLLTMVDE-GFIPDFVTYGTLVDAMCKCGKSAAALELF 485

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                    PD V ++ALIT        + A+ +  +++  +           A++   A
Sbjct: 486 EEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLDVALW---------NAMILGYA 536

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF---ACSVYDDMTKKGVIP 259
             G  D   +++  + + +++  P   T       +    E    A  ++D   K G  P
Sbjct: 537 ENGSGDLGLKLFVELIESDVE--PNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFP 594

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           D    + LID     G +E A  I    K 
Sbjct: 595 DLFVANTLIDVFAKCGDLEEARRIFYSMKQ 624


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 174/391 (44%), Gaps = 17/391 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQ--KAIKEAF-RFFKLVPNP 90
           L + G + E + LL +M + G+ D D V ++   N  CK    K  KE   R +++  +P
Sbjct: 413 LCKNGFLDEAVVLLNEMSKDGI-DPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSP 471

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
               ++ L+  C      + A ++   +   G   D   +  L+T+  K+GKV    E +
Sbjct: 472 NGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFM 531

Query: 151 K--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +        P+ V F+ LI   G SG   +AF V  EM    H   P   T G+L+K   
Sbjct: 532 RCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGH--HPTFFTYGSLLKGLC 589

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G +  A +  K +H         +Y   +    ++G+   A S++ +M ++ ++PD  
Sbjct: 590 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 649

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEH 321
             ++LI      GK   A    +EA+ +G +    + Y+  +     A  W+  +   E 
Sbjct: 650 TYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQ 709

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M ++   P + T NA+I       ++ KT ++L +M +    PN  TY+ILL    ++ D
Sbjct: 710 MDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKD 769

Query: 382 VEVGLMLLSQAKEDGVIPN-LVMFKCIIGMC 411
           V    +L      +G++P+ L     ++G+C
Sbjct: 770 VSTSFLLYRSIILNGILPDKLTCHSLVLGIC 800



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 183/408 (44%), Gaps = 24/408 (5%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + +YN LI    R  RI++   LL DM RK ++  ++V +    N   ++  +  A
Sbjct: 259 VDADVCTYNMLIHDLCRSNRIAKGYLLLRDM-RKRMIHPNEVTYNTLINGFSNEGKVLIA 317

Query: 81  FRF------FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
            +       F L PN    TFN L+    S  + + A ++  +++  GL      Y  L+
Sbjct: 318 SQLLNEMLSFGLSPNHV--TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLL 375

Query: 135 TTCAKSGKVD---AMFENVKPD-----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               K+ + D     +  +K +     R+ +  +I    ++G +D A  +L EM+ +   
Sbjct: 376 DGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD--G 433

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           +DPD +T  AL+      G+   A+E+   I++  +     +Y+  I  C + G  + A 
Sbjct: 434 IDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAI 493

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +Y+ M  +G   D    + L+     AGKV  A E ++   + GI    +S+  L+   
Sbjct: 494 RIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGY 553

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            N+    KA  +++ M  +   PT  T  +L+  LC G  L +  + L  + ++    +T
Sbjct: 554 GNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDT 613

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           + Y+ LL A  +  ++   + L  +  +  ++P+   +  +I G+C +
Sbjct: 614 VMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRK 661



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 92/421 (21%), Positives = 174/421 (41%), Gaps = 52/421 (12%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           +R+G I + +++   M   G        +A   +V KS + +   + F K +      P 
Sbjct: 134 LREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDV-SVWSFLKEMLKRKICPD 192

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
           ++TFN+L++V  +    E +  +++ ++++G       Y T++    K G+  A  E   
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 V  D   +N LI    +S  + + + +L +M   +  + P+ +T   L+   +N
Sbjct: 253 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM--IHPNEVTYNTLINGFSN 310

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G+V  A ++   +  + +      +   I+     G+++ A  ++  M  KG+ P EV 
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHM 322
              L+D      + + A       K  G+ VG I+Y+ ++ G C N     +A+ L   M
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNG-FLDEAVVLLNEM 429

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---- 378
               + P + T +ALI   C   +     E++  +  +GL PN I YS L+  C R    
Sbjct: 430 SKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCL 489

Query: 379 ----------------KDDVEVGLMLLSQAK---------------EDGVIPNLVMFKCI 407
                           +D     +++ S  K                DG++PN V F C+
Sbjct: 490 KEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCL 549

Query: 408 I 408
           I
Sbjct: 550 I 550



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 131/297 (44%), Gaps = 21/297 (7%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDV 176
           +V++ GL+ D  +    ITT      +        P R +   L    G+S  V  A   
Sbjct: 60  VVKQPGLETDHIVQLVCITT-----HILVRARMYDPARHILKELSLMSGKSSFVFGALMT 114

Query: 177 ---LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI-- 231
              L   N  V+ +         L++     G +  + E+++++  Y     P VYT   
Sbjct: 115 TYRLCNSNPSVYDI---------LIRVYLREGMIQDSLEIFRLMGLYGF--NPSVYTCNA 163

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            +    ++G+     S   +M K+ + PD    + LI+     G  E +  ++Q+ +  G
Sbjct: 164 ILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSG 223

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
            +  I++Y++++        ++ A+EL +HMKS  +   V T N LI  LC  +++ K  
Sbjct: 224 YAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGY 283

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            +L DM+   + PN +TY+ L+     +  V +   LL++    G+ PN V F  +I
Sbjct: 284 LLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALI 340



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 152/353 (43%), Gaps = 16/353 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R G + E I + E M  +G       ++    ++CK+ K + EA  F + + +    P  
Sbjct: 485 RMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK-VAEAEEFMRCMTSDGILPNT 543

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP 152
            +F+ L++   +S +   AF V   + + G       Y +L+    K G +    + +K 
Sbjct: 544 VSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKS 603

Query: 153 --------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                   D V++N L+TA  +SG + +A  +  EM      + PD  T  +L+      
Sbjct: 604 LHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQR--SILPDSYTYTSLISGLCRK 661

Query: 205 GQVDRAREVYKMIH-KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           G+   A    K    + N+     +YT  ++   + G W+      + M   G  PD V 
Sbjct: 662 GKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVT 721

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +A+ID     GK+E   ++L E  NQ     + +Y+ L+   S  K+   +  LY  + 
Sbjct: 722 TNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSII 781

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
              + P   T ++L+  +C+ + L   +++L      G+  +  T+++L+  C
Sbjct: 782 LNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKC 834



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/325 (19%), Positives = 140/325 (43%), Gaps = 30/325 (9%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
            P L+T+N+L+   +  KD   +F + R +                           +   
Sbjct: 752  PNLTTYNILLHGYSKRKDVSTSFLLYRSI---------------------------ILNG 784

Query: 150  VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
            + PD++  ++L+    +S  ++    +L         V+ D  T   L+  C   G+++ 
Sbjct: 785  ILPDKLTCHSLVLGICESNMLEIGLKILKAFICR--GVEVDRYTFNMLISKCCANGEINW 842

Query: 210  AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
            A ++ K++    I    +     ++  ++   ++ +  V  +M+K+G+ P+      LI+
Sbjct: 843  AFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLIN 902

Query: 270  FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                 G ++ AF + +E     I    ++ S+++ A +      +A  L   M  +KL P
Sbjct: 903  GLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVP 962

Query: 330  TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            T+++   L+   C    + + +E+   M + GL  + ++Y++L+     K D+ +   L 
Sbjct: 963  TIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELY 1022

Query: 390  SQAKEDGVIPNLVMFKCII-GMCSR 413
             + K DG + N   +K +I G+ +R
Sbjct: 1023 EEMKGDGFLANATTYKALIRGLLAR 1047



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/257 (21%), Positives = 113/257 (43%), Gaps = 3/257 (1%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           V++ LI    + G +  + ++   M   ++  +P   T  A++ +   +G+        K
Sbjct: 125 VYDILIRVYLREGMIQDSLEIFRLMG--LYGFNPSVYTCNAILGSVVKSGEDVSVWSFLK 182

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            + K  I      + I IN     G +E +  +   M K G  P  V  + ++ +    G
Sbjct: 183 EMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKG 242

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           + +AA E+L   K++G+   + +Y+ L+     +    K   L   M+   + P   T N
Sbjct: 243 RFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYN 302

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI    +  ++    ++L++M S GL PN +T++ L+     + + +  L +    +  
Sbjct: 303 TLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAK 362

Query: 396 GVIPNLVMFKCII-GMC 411
           G+ P+ V +  ++ G+C
Sbjct: 363 GLTPSEVSYGVLLDGLC 379



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 78/366 (21%), Positives = 162/366 (44%), Gaps = 30/366 (8%)

Query: 58  DMDKV-YHARFFN-------VCKSQKAIKEAFRFFK---LVPNP--TLSTFNMLMSVCAS 104
           +M KV +H  FF        +CK    ++EA +F K    VP    T+    +L ++C S
Sbjct: 568 EMTKVGHHPTFFTYGSLLKGLCKGGH-LREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKS 626

Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--VDAMFE-------NVKPDRV 155
              ++       +VQ + L  D   YT+LI+   + GK  +  +F        NV P++V
Sbjct: 627 GNLAKAVSLFGEMVQRSIL-PDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKV 685

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           ++   +    ++G          +M+   H   PD +T  A++   +  G++++  ++  
Sbjct: 686 MYTCFVDGMFKAGQWKAGIYFREQMDNLGHT--PDIVTTNAMIDGYSRMGKIEKTNDLLP 743

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            +   N       Y I ++  S+  D   +  +Y  +   G++PD++   +L+     + 
Sbjct: 744 EMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESN 803

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMG-ACSNAK-NWQKALELYEHMKSIKLKPTVST 333
            +E   +IL+    +G+ V   +++ L+   C+N + NW  A +L + M S+ +     T
Sbjct: 804 MLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINW--AFDLVKVMTSLGISLDKDT 861

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            +A+++ L    +  ++  VL +M   G+ P +  Y  L+    R  D++   ++  +  
Sbjct: 862 CDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMI 921

Query: 394 EDGVIP 399
              + P
Sbjct: 922 AHKICP 927



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 116/275 (42%), Gaps = 5/275 (1%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P     NA++ +  +SG     +  L EM      + PD  T   L+      G  +++ 
Sbjct: 156 PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKR--KICPDVATFNILINVLCAEGSFEKSS 213

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            + + + K     T   Y   ++   + G ++ A  + D M  KGV  D    + LI   
Sbjct: 214 YLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDL 273

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
             + ++   + +L++ + + I    ++Y++L+   SN      A +L   M S  L P  
Sbjct: 274 CRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNH 333

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T NALI          + +++   M++ GL P+ ++Y +LL    +  + ++      +
Sbjct: 334 VTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMR 393

Query: 392 AKEDGVIPNLVMFKCII-GMCSRRY--EKARTLNE 423
            K +GV    + +  +I G+C   +  E    LNE
Sbjct: 394 MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNE 428


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 154/327 (47%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM-- 146
           P +  +N ++      K    AF +   +   G+  D   Y+ LI+     GK+ DA+  
Sbjct: 223 PNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDL 282

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 EN+KPD   FN L+ A  + G +     V   M  +   + P+ +T  +LM   
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQ--GIKPNFVTYNSLMDGY 340

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               +V++A+ ++  + +  +    + Y+I IN   +   ++ A +++ +M +K +IPD 
Sbjct: 341 CLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDV 400

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  S+LID    +G++  A +++ +  ++G+   I +Y+S++ A        KA+ L   
Sbjct: 401 VTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTK 460

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
            K    +P +ST + LI  LC   +L    +V  D+   G   +   Y+I++     +  
Sbjct: 461 FKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGL 520

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
               L LLS+ +++G IP+   ++ II
Sbjct: 521 FNEALALLSKMEDNGCIPDAKTYEIII 547



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 166/349 (47%), Gaps = 16/349 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P   TF  L          + AF     V   G   D   Y TLI    K G+  A  + 
Sbjct: 153 PDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDL 212

Query: 150 --------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V+P+ V++N +I +  +   V+ AFD+ +EM ++   + PD +T  AL+   
Sbjct: 213 LQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSK--GISPDVVTYSALISGF 270

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              G++  A +++  +   NIK  P+VYT  I +N   + G  +   +V+D M K+G+ P
Sbjct: 271 CILGKLKDAIDLFNKMILENIK--PDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKP 328

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V  ++L+D      +V  A  I       G++  I SYS ++      K + +A+ L+
Sbjct: 329 NFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLF 388

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M    + P V T ++LI  L    ++   ++++  M   G+ PN  TY+ +L A  + 
Sbjct: 389 KEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKT 448

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
             V+  + LL++ K+ G  P++  +  +I G+C S + E AR + E +L
Sbjct: 449 HQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLL 497



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 176/391 (45%), Gaps = 27/391 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-K 85
           SY  LI    + G     +DLL+ ++   +     +Y+    ++CK  K + EAF  F +
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKV-KLVNEAFDLFSE 250

Query: 86  LVP---NPTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           +V    +P + T++ L+S   +    KD+   F  + L     +K D   +  L+    K
Sbjct: 251 MVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMIL---ENIKPDVYTFNILVNAFCK 307

Query: 140 SGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            GK+          M + +KP+ V +N+L+        V++A  +   M      V+PD 
Sbjct: 308 DGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQG--GVNPDI 365

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
            +   ++       + D A  ++K +H+ NI      Y+  I+  S++G   +A  + D 
Sbjct: 366 QSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQ 425

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK 310
           M  +GV P+    ++++D      +V+ A  +L + K++G    I +YS L+ G C + K
Sbjct: 426 MHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGK 485

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             + A +++E +        V     +I   C      + + +LS M+  G  P+  TY 
Sbjct: 486 -LEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYE 544

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
           I++++  +KD+ ++   LL +    G+  N 
Sbjct: 545 IIILSLFKKDENDMAEKLLREMIARGLPLNF 575


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 154/358 (43%), Gaps = 45/358 (12%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF------ 147
           T+N L+     S     A +V + + E G+    + Y+ L+    K   VD +       
Sbjct: 173 TYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEM 232

Query: 148 --ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               VKP+   +   I   GQ+   D A+ +L +M  E     PD +T   +++   +AG
Sbjct: 233 EARGVKPNVYSYTICIRVLGQAARFDEAYHILGKM--EDSGCKPDVVTHTVIIQVLCDAG 290

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++  A+ V+  +   + K     Y   ++ C  +GD +    V++ M   G   + V  +
Sbjct: 291 RLSDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYT 350

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL------- 318
           A++D     G+V+ A  +  E K +G+S    SY+SL+     A  + +ALEL       
Sbjct: 351 AVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNAC 410

Query: 319 ----------------------------YEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
                                       YEHMKS  + P V+  NA++ +L    +L   
Sbjct: 411 GPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMA 470

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             V  ++K++G+ P+TITY++++  C +    +  +   S   E G +P+++    +I
Sbjct: 471 KRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLI 528



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 171/403 (42%), Gaps = 19/403 (4%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNV-CKSQKA 76
           A  V   ++SY   IR      R  E   +L  ME  G    D V H     V C + + 
Sbjct: 234 ARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGC-KPDVVTHTVIIQVLCDAGRL 292

Query: 77  IKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
                 F+K+  +   P   T+  L+  C  S DS+   +V   +   G   +   YT +
Sbjct: 293 SDAKAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAV 352

Query: 134 ITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +    + G+VD   A+F+ +K     P++  +N+LI+   ++   DRA ++   MNA   
Sbjct: 353 VDALCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNA-CG 411

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
           P  P+  T    +     +GQ  +A + Y+ +    I          +   + +G    A
Sbjct: 412 P-SPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMA 470

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             V+ ++   GV PD +  + +I     A K + A     +    G    +++ +SL+  
Sbjct: 471 KRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDT 530

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
                   +A +L+  +K +K++PT  T N L++ L    ++ + M++L +M      PN
Sbjct: 531 LYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPN 590

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            ITY+ +L    +  +V   + +L    E G  P+L  +  ++
Sbjct: 591 LITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVM 633



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 156/372 (41%), Gaps = 49/372 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P + ++ + + V   +   + A+ +L  ++++G K D   +T +I     +G++    A+
Sbjct: 239 PNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAV 298

Query: 147 F-----ENVKPDRVVFNALITACGQSG--------------------------------- 168
           F      + KPDRV +  L+  CG SG                                 
Sbjct: 299 FWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQ 358

Query: 169 --AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
              VD A  V  EM  +   + P+  +  +L+     A   DRA E++   H      +P
Sbjct: 359 VGRVDEALAVFDEMKEK--GMSPEQYSYNSLISGFLKADMFDRALELFN--HMNACGPSP 414

Query: 227 EVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
             YT  + IN   ++G    A   Y+ M  KG++PD    +A++     +G++  A  + 
Sbjct: 415 NGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVF 474

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
            E K  G+S   I+Y+ ++  CS A    +A+  +  M      P V  +N+LI  L  G
Sbjct: 475 YELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKG 534

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            +  +  ++   +K + + P   TY+ LL    R+  V+  + LL +       PNL+ +
Sbjct: 535 GKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITY 594

Query: 405 KCIIGMCSRRYE 416
             ++   S+  E
Sbjct: 595 NTVLDCLSKNGE 606



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 92/432 (21%), Positives = 168/432 (38%), Gaps = 54/432 (12%)

Query: 28   QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
             L +YN ++    + G ++  ID+L  M  KG       Y+   + + K ++ ++EAFR 
Sbjct: 590  NLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEER-LEEAFRM 648

Query: 84   F---KLVPNPTLSTF-NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            F   K +  P  +T   +L S   +    E    V   + +AG   D   + +L+    K
Sbjct: 649  FCQMKKILAPDYATLCTILPSFVKNGLMKEALHTVKEYILKAGCNVDKSSFHSLMEGILK 708

Query: 140  SGKVDAMFE---NVKPDRVV---------------------------------------- 156
               V+   E   N+    ++                                        
Sbjct: 709  KAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAHQLFNKFKGLGVSLKTGS 768

Query: 157  FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
            +N+LI        +D A D+  EM        PD  T   ++ A   + +V+   +V K 
Sbjct: 769  YNSLIRGLVDENLIDIAEDLFTEMKR--LGCGPDEFTYNLILDAMGKSMRVEEMLKVQKE 826

Query: 217  IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
            +H+   + T   Y   I+   ++   E A  +Y ++  +G  P       L+D    +GK
Sbjct: 827  MHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGK 886

Query: 277  VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
            +  A  +  E    G       Y+ L+     A N +   +L+E M    + P + +   
Sbjct: 887  MVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTI 946

Query: 337  LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
            LI  LC   +L   +     +  LGL P+ I Y++L+    + + +E  + L ++ K+ G
Sbjct: 947  LIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKG 1006

Query: 397  VIPNLVMFKCII 408
            +IPNL  +  +I
Sbjct: 1007 IIPNLYTYNSLI 1018



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/351 (20%), Positives = 156/351 (44%), Gaps = 15/351 (4%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
            ++++  + + I+  E++  +G+L  D        ++CK +KA+ EA + F       +S 
Sbjct: 706  ILKKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKAL-EAHQLFNKFKGLGVSL 764

Query: 94   ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
               ++N L+         + A  +   ++  G   D   Y  ++    KS +V+ M +  
Sbjct: 765  KTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEMLKVQ 824

Query: 149  ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                    +   V +N +I+   +S  +++A D+   + +E     P   T G L+    
Sbjct: 825  KEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSE--GFSPTPCTYGPLLDGLL 882

Query: 203  NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             +G++  A  ++  + +Y  +    +Y I +N     G+ E  C +++ M ++G+ PD  
Sbjct: 883  KSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIK 942

Query: 263  FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
              + LID    AG++       ++    G+   +I Y+ L+     ++  ++A+ L+  M
Sbjct: 943  SYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFNEM 1002

Query: 323  KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            K   + P + T N+LI  L    +  +  ++  ++   G  P+  TY+ L+
Sbjct: 1003 KKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALI 1053



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/320 (19%), Positives = 139/320 (43%), Gaps = 11/320 (3%)

Query: 97   MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFENVK-- 151
            ++  +C   K  E A Q+    +  G+      Y +LI        +D    +F  +K  
Sbjct: 737  LIRHLCKHKKALE-AHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRL 795

Query: 152  ---PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
               PD   +N ++ A G+S  V+    V  EM+ + +  +  ++T   ++     + +++
Sbjct: 796  GCGPDEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGY--ESTYVTYNTIISGLVKSKRLE 853

Query: 209  RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            +A ++Y  +       TP  Y   ++   ++G    A +++++M + G  P+    + L+
Sbjct: 854  QAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILL 913

Query: 269  DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
            +    AG  E   ++ ++   QGI+  I SY+ L+     A      L  +  +  + L+
Sbjct: 914  NGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLE 973

Query: 329  PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
            P +   N LI  L   +++ + + + ++MK  G+ PN  TY+ L++   +         +
Sbjct: 974  PDLIVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQM 1033

Query: 389  LSQAKEDGVIPNLVMFKCII 408
              +    G  P++  +  +I
Sbjct: 1034 YEELLRKGWKPSVFTYNALI 1053



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/319 (19%), Positives = 139/319 (43%), Gaps = 16/319 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L + GR+ E + + ++M+ KG+      Y++      K+      A   F  +    P+P
Sbjct: 356 LCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKAD-MFDRALELFNHMNACGPSP 414

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----AM 146
              T  + ++    S  S  A Q    ++  G+  D      ++ + A SG++       
Sbjct: 415 NGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVF 474

Query: 147 FE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +E     V PD + +  +I  C ++   D A +  ++M  E   V PD + + +L+    
Sbjct: 475 YELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDM-VESGCV-PDVLALNSLIDTLY 532

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G+ + A +++  + +  I+ T   Y   ++   + G  +    + ++MT+    P+ +
Sbjct: 533 KGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLI 592

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + ++D     G+V  A ++L     +G +  + SY+++M      +  ++A  ++  M
Sbjct: 593 TYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQM 652

Query: 323 KSIKLKPTVSTMNALITAL 341
           K I L P  +T+  ++ + 
Sbjct: 653 KKI-LAPDYATLCTILPSF 670



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 148/329 (44%), Gaps = 27/329 (8%)

Query: 25   VSEQLHSYNRLIRQGRISECI-----DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
            VS +  SYN LIR G + E +     DL  +M+R G    +  Y+     + KS + ++E
Sbjct: 762  VSLKTGSYNSLIR-GLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMR-VEE 819

Query: 80   AFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
              +  K +       T  T+N ++S    SK  E A  +   +   G       Y  L+ 
Sbjct: 820  MLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLD 879

Query: 136  TCAKSGK-VDA------MFE-NVKPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEV 184
               KSGK VDA      M E   +P+  ++N L+      G +  V + F+ + E     
Sbjct: 880  GLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQG--- 936

Query: 185  HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
              ++PD  +   L+     AG+++     ++ +H+  ++    VY + I+   ++   E 
Sbjct: 937  --INPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEE 994

Query: 245  ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
            A S++++M KKG+IP+    ++LI   G AGK   A ++ +E   +G    + +Y++L+ 
Sbjct: 995  AVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIR 1054

Query: 305  ACSNAKNWQKALELYEHMKSIKLKPTVST 333
              S + +   A   Y  M     +P  ST
Sbjct: 1055 GYSVSGSTDNAYAAYGQMIVGGCQPNSST 1083



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 9/166 (5%)

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
           ++  L+   G  G +   F+++Q+   Q +   + +++++ G        + A      M
Sbjct: 106 YMLELMRAHGRVGDMAQVFDLMQK---QVVKTNVGTFATIFGGVGVEGGLRSAPVALPVM 162

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           +   +     T N LI  L       + MEV   M   G+ P+  TYS+L+VA  +K DV
Sbjct: 163 REAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDV 222

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE--HVL 426
           +  L LL++ +  GV PN+  +     +C R   +A   +E  H+L
Sbjct: 223 DTVLWLLNEMEARGVKPNVYSYT----ICIRVLGQAARFDEAYHIL 264



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 96/238 (40%), Gaps = 9/238 (3%)

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
           F   A    +VH  +  +  +  LM+A    G+V    +V+ ++ K  +K     +    
Sbjct: 88  FTAAARQPTKVHTTESCNYML-ELMRA---HGRVGDMAQVFDLMQKQVVKTNVGTFATIF 143

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
                 G    A      M + G+  +    + LI F   +G    A E+ +     GIS
Sbjct: 144 GGVGVEGGLRSAPVALPVMREAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGIS 203

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
             + +YS LM A    ++    L L   M++  +KP V +    I  L    +  +   +
Sbjct: 204 PSVRTYSVLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYHI 263

Query: 354 LSDMKSLGLCPNTITYSILL-VACE--RKDDVEVGL--MLLSQAKEDGVIPNLVMFKC 406
           L  M+  G  P+ +T+++++ V C+  R  D +     M  S  K D V    ++ KC
Sbjct: 264 LGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLLDKC 321


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 150/329 (45%), Gaps = 10/329 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           PT+ T+++LM      +D+E    +L  ++  G++ +   YT  I    ++G+++  +  
Sbjct: 204 PTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRI 263

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E  KPD V    LI     +G +  A DV  +M A      PD +T   L+  C
Sbjct: 264 LRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQ--KPDRVTYITLLDKC 321

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            ++G      E++  +           YT A++   Q G  + A  V+D+M +KG+IP +
Sbjct: 322 GDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQ 381

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++LI     A +   A E+       G +    ++   +     +    KAL+ YE 
Sbjct: 382 YSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYEL 441

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MKS  + P V   NA++  L    +L     V  ++K++G+ P+ ITY++++  C +  +
Sbjct: 442 MKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASN 501

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
            +  + + ++  E+   P+++    +I M
Sbjct: 502 ADEAMKIFAEMIENRCAPDVLAMNSLIDM 530



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 186/432 (43%), Gaps = 58/432 (13%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LI    + G   E +D+ + M   G++   + Y        K + A        +
Sbjct: 172 YTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGE 231

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + ++ + + V   +   E A+++LR ++E G K D    T LI     +G+
Sbjct: 232 MEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGR 291

Query: 143 V----DAMFE----NVKPDRVVFNALITACGQSG-------------------------- 168
           +    D  ++    + KPDRV +  L+  CG SG                          
Sbjct: 292 LADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTA 351

Query: 169 ---------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
                     VD A DV  EM  +   + P   +  +L+     A + +RA E++  +  
Sbjct: 352 AVDALCQVGRVDEALDVFDEMKQK--GIIPQQYSYNSLISGFLKADRFNRALELFNHM-- 407

Query: 220 YNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
            NI G TP  YT  + IN   ++G+   A   Y+ M  KG++PD V  +A++      G+
Sbjct: 408 -NIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGR 466

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           +  A  +  E K  GIS   I+Y+ ++  CS A N  +A++++  M   +  P V  MN+
Sbjct: 467 LGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNS 526

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           LI  L    +  +  ++  ++K + L P   TY+ LL    R+  V+  + LL     + 
Sbjct: 527 LIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNS 586

Query: 397 VIPNLVMFKCII 408
             PN++ +  ++
Sbjct: 587 FPPNIITYNTVL 598



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/422 (20%), Positives = 174/422 (41%), Gaps = 50/422 (11%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNV-CKSQKA 76
           A  V   ++SY   IR     GR+ E   +L  ME +G    D V +     + C + + 
Sbjct: 234 ARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGC-KPDVVTNTVLIQILCDAGRL 292

Query: 77  IKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
                 F+K+  +   P   T+  L+  C  S DS    ++   ++  G   +   YT  
Sbjct: 293 ADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAA 352

Query: 134 ITTCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMN---- 181
           +    + G+VD    +F+ +K     P +  +N+LI+   ++   +RA ++   MN    
Sbjct: 353 VDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGP 412

Query: 182 -----------------------------AEVHPVDPDHITIGALMKACANAGQVDRARE 212
                                         +   + PD +   A++   A  G++  A+ 
Sbjct: 413 TPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKR 472

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           V+  +    I      YT+ I CCS+  + + A  ++ +M +    PD + +++LID   
Sbjct: 473 VFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLY 532

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            AG+   A++I  E K   +     +Y++L+         ++ ++L E M S    P + 
Sbjct: 533 KAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNII 592

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N ++  LC   ++   +++L  M   G  P+  +Y+ ++    ++D ++    +  Q 
Sbjct: 593 TYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQM 652

Query: 393 KE 394
           K+
Sbjct: 653 KK 654



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/351 (20%), Positives = 153/351 (43%), Gaps = 15/351 (4%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
            ++++    + I+  E++   GLL  D        ++CK ++A+  A    K   N  +S 
Sbjct: 706  ILKRDGTEKSIEFAENIASSGLLLDDLFLSPIIRHLCKHKEALA-AHELVKKFENLGVSL 764

Query: 94   ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
               ++N L+         + A ++   ++  G   D   Y  ++    KS +++ M +  
Sbjct: 765  KTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQ 824

Query: 149  ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                    K   V +N +I+   +S  +D A ++  ++ +E     P   T G L+    
Sbjct: 825  EEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSE--GFSPTPCTYGPLLDGLL 882

Query: 203  NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              G ++ A  ++  + +   +    +Y I +N     GD E  C +++ M ++G+ PD  
Sbjct: 883  KDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIK 942

Query: 263  FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
              + +ID     G++       ++  + G+   +I+Y+ L+     +   ++AL LY  M
Sbjct: 943  SYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSLYNDM 1002

Query: 323  KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            +   + P + T N+LI  L    +  +  ++  ++ + G  PN  TY+ L+
Sbjct: 1003 EKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALI 1053



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 104/472 (22%), Positives = 182/472 (38%), Gaps = 59/472 (12%)

Query: 29   LHSYNR----LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIK 78
            L SYN     L+++ R+ E   +           M KV    +  VC           +K
Sbjct: 626  LSSYNTVMYGLVKEDRLDEAFWMF--------CQMKKVLAPDYATVCTILPSFVRSGLMK 677

Query: 79   EAF---RFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            EA    R + L P+  +  S+ + LM        +E + +    +  +GL  D    + +
Sbjct: 678  EALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPI 737

Query: 134  ITTCAKSGKVDAMFENVKPDRVV--------FNALITACGQSGAVDRAFDVLAEMNAEVH 185
            I    K  +  A  E VK    +        +NALI        +D A ++ +EM     
Sbjct: 738  IRHLCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKR--L 795

Query: 186  PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
              DPD  T   ++ A   + +++   ++ + +H    K T   Y   I+   ++   + A
Sbjct: 796  GCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEA 855

Query: 246  CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             ++Y  +  +G  P       L+D     G +E A  +  E    G       Y+ L+  
Sbjct: 856  INLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNG 915

Query: 306  CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
               A + +K  EL+E M    + P + +   +I  LC   +L   +     +  +GL P+
Sbjct: 916  YRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPD 975

Query: 366  TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---------GMCSRRYE 416
             ITY++L+    +   +E  L L +  ++ G+ PNL  +  +I             + YE
Sbjct: 976  LITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYE 1035

Query: 417  K--ARTLNEHVLSFN--------SGRPQIENKWTSLALMVYREAIVAGTIPT 458
            +  A+    +V ++N        SG P  EN     A   Y   IV G  P 
Sbjct: 1036 ELLAKGWKPNVFTYNALIRGYSVSGSP--EN-----AFAAYGRMIVGGCRPN 1080



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/364 (20%), Positives = 151/364 (41%), Gaps = 41/364 (11%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           K   Y  +V     + + L + GR+ E +D+ ++M++KG++     Y++      K+ + 
Sbjct: 338 KADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADR- 396

Query: 77  IKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
              A   F  +    P P   T  + ++    S +S  A +   L++  G          
Sbjct: 397 FNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKG---------- 446

Query: 133 LITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
                            + PD V  NA++    ++G +  A  V  E+ A    + PD+I
Sbjct: 447 -----------------IVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKA--MGISPDNI 487

Query: 193 TIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVY 249
           T   ++K C+ A   D A +++ +MI     +  P+V  +   I+   + G    A  ++
Sbjct: 488 TYTMMIKCCSKASNADEAMKIFAEMIEN---RCAPDVLAMNSLIDMLYKAGRGNEAWKIF 544

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
            ++ +  + P +   + L+   G  GKV+   ++L+   +      II+Y++++      
Sbjct: 545 YELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCLCKN 604

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
                AL++   M      P +S+ N ++  L   D+L +   +   MK + L P+  T 
Sbjct: 605 GEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDRLDEAFWMFCQMKKV-LAPDYATV 663

Query: 370 SILL 373
             +L
Sbjct: 664 CTIL 667



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 165/416 (39%), Gaps = 33/416 (7%)

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MFE-NVKPDRVVFNALITAC 164
           QV  L+Q   +KA+   + T+       G + +       M E  +  +   +N LI   
Sbjct: 122 QVFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFL 181

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
            +SG    A DV   M A+   V P   T   LM A    G+   A  V  ++ +   +G
Sbjct: 182 VKSGFDREAMDVYKAMAAD--GVVPTVRTYSVLMLA---FGKRRDAETVVGLLGEMEARG 236

Query: 225 T-PEVY--TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
             P VY  TI I    Q G  E A  +   M ++G  PD V  + LI     AG++  A 
Sbjct: 237 VRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAK 296

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           ++  + K        ++Y +L+  C ++ + +   E++  +K+      V +  A + AL
Sbjct: 297 DVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDAL 356

Query: 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
           C   ++ + ++V  +MK  G+ P   +Y+ L+    + D     L L +     G  PN 
Sbjct: 357 CQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNG 416

Query: 402 VMFKCIIGMCSRRYEKARTLNEHVLSFNSG-RPQI-----------ENKWTSLALMVYRE 449
                 I    +  E  + L  + L  + G  P +           +     +A  V+ E
Sbjct: 417 YTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHE 476

Query: 450 AIVAGTIPTVEVVSKVLGCLQLPYNAD----IRERLVENLGVSADALKRSNLCSLI 501
               G  P     + ++ C     NAD    I   ++EN   + D L  ++L  ++
Sbjct: 477 LKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENR-CAPDVLAMNSLIDML 531



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 145/325 (44%), Gaps = 19/325 (5%)

Query: 25   VSEQLHSYNRLIRQGRISECIDLLED----MERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
            VS +  SYN LI      + ID+ E+    M+R G    +  YH     + KS + I++ 
Sbjct: 762  VSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMR-IEDM 820

Query: 81   FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             +  + + N     T  T+N ++S    SK  + A  +   +   G       Y  L+  
Sbjct: 821  LKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDG 880

Query: 137  CAKSGKVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
              K G ++   A+F+ +     +P+  ++N L+     +G  ++  ++   M  +   ++
Sbjct: 881  LLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQ--GMN 938

Query: 189  PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
            PD  +   ++      G+++     +K +    ++     Y + I+   ++G  E A S+
Sbjct: 939  PDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSL 998

Query: 249  YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            Y+DM KKG+ P+    ++LI + G AGK   A ++ +E   +G    + +Y++L+   S 
Sbjct: 999  YNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSV 1058

Query: 309  AKNWQKALELYEHMKSIKLKPTVST 333
            + + + A   Y  M     +P  ST
Sbjct: 1059 SGSPENAFAAYGRMIVGGCRPNSST 1083



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 111/273 (40%), Gaps = 15/273 (5%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           LM+A    G+V    +V+ ++ +  IK     +          G    A      M + G
Sbjct: 110 LMRA---HGRVGDVAQVFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAG 166

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           ++ +    + LI F   +G    A ++ +     G+   + +YS LM A    ++ +  +
Sbjct: 167 IVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVV 226

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VA 375
            L   M++  ++P V +    I  L    +L +   +L  M+  G  P+ +T ++L+ + 
Sbjct: 227 GLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQIL 286

Query: 376 CE--RKDDVE--VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE------KARTLNEHV 425
           C+  R  D +     M  S  K D V    ++ KC     SR         KA   N++V
Sbjct: 287 CDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNV 346

Query: 426 LSFNSGRPQI-ENKWTSLALMVYREAIVAGTIP 457
           +S+ +    + +      AL V+ E    G IP
Sbjct: 347 VSYTAAVDALCQVGRVDEALDVFDEMKQKGIIP 379


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 166/371 (44%), Gaps = 16/371 (4%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           V  +RFF+     K       F K +        + T N++++       +  A+ VL  
Sbjct: 79  VDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGK 138

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKV-------DAMFEN-VKPDRVVFNALITACGQSGA 169
           V + G + D   + TLI      GKV       D M EN  +PD V +N+++    +SG 
Sbjct: 139 VMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGD 198

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
              A D+L +M  E   V  D  T   ++ +    G +D A  ++K +    IK +   Y
Sbjct: 199 TSLALDLLRKM--EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTY 256

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
              +    + G W     +  DM  + ++P+ +  + L+D     GK++ A E+ +E   
Sbjct: 257 NSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMIT 316

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           +GIS  II+Y++LM          +A  + + M   K  P + T  +LI   C   ++  
Sbjct: 317 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDD 376

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
            M+V  ++   GL  N +TYSIL+    +   +++   L  +    GV+P+++ +  ++ 
Sbjct: 377 GMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD 436

Query: 409 GMCSR-RYEKA 418
           G+C   + EKA
Sbjct: 437 GLCDNGKLEKA 447



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 169/395 (42%), Gaps = 34/395 (8%)

Query: 20  NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           N   DV       + L R G I   I L ++ME KG+      Y++    +CK+ K    
Sbjct: 213 NVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDG 272

Query: 80  AFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           A     +V     P + TFN+L+ V                V+E  L+   +LY  +IT 
Sbjct: 273 ALLLKDMVSREIVPNVITFNVLLDV---------------FVKEGKLQEANELYKEMIT- 316

Query: 137 CAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                        + P+ + +N L+        +  A ++L  M    +   PD +T  +
Sbjct: 317 -----------RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVR--NKCSPDIVTFTS 363

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+K      +VD   +V++ I K  +      Y+I +    Q+G  + A  ++ +M   G
Sbjct: 364 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 423

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKA 315
           V+PD +    L+D     GK+E A EI ++ +   + +GI+ Y++++ G C   K  + A
Sbjct: 424 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK-VEDA 482

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             L+  +    +KP V T   +I+ LC    L +   +L  M+  G  PN  TY+ L+ A
Sbjct: 483 WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 542

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
             R  D+     L+ + K  G   +    K +I M
Sbjct: 543 HLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDM 577



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 187/426 (43%), Gaps = 83/426 (19%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI+    +G++SE + L++ M   G               C+              
Sbjct: 150 TFNTLIKGLFLEGKVSEAVVLVDRMVENG---------------CQ-------------- 180

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              P + T+N +++    S D+  A  +LR ++E  +KAD   Y+T+I +  + G +DA 
Sbjct: 181 ---PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 237

Query: 147 F--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                    + +K   V +N+L+    ++G  +    +L +M +    + P+ IT   L+
Sbjct: 238 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS--REIVPNVITFNVLL 295

Query: 199 KACANAGQVDRAREVYK-MIHK--------YNI------------------------KGT 225
                 G++  A E+YK MI +        YN                         K +
Sbjct: 296 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 355

Query: 226 PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
           P++  +T  I         +    V+ +++K+G++ + V  S L+     +GK++ A E+
Sbjct: 356 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 415

Query: 284 LQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
            QE  + G+   +++Y  L+ G C N K  +KALE++E ++  K+   +     +I  +C
Sbjct: 416 FQEMVSHGVLPDVMTYGILLDGLCDNGK-LEKALEIFEDLQKSKMDLGIVMYTTIIEGMC 474

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
            G ++     +   +   G+ PN +TY++++    +K  +    +LL + +EDG  PN  
Sbjct: 475 KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDC 534

Query: 403 MFKCII 408
            +  +I
Sbjct: 535 TYNTLI 540



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 152/328 (46%), Gaps = 21/328 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+R     G+ ++   LL+DM  + ++     ++    +V   +  ++EA   +K 
Sbjct: 255 TYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNV-LLDVFVKEGKLQEANELYKE 313

Query: 87  VP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +     +P + T+N LM   C  ++ SE A  +L L+       D   +T+LI       
Sbjct: 314 MITRGISPNIITYNTLMDGYCMQNRLSE-ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVK 372

Query: 142 KVD---AMFENVKPDRVVFNA-----LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +VD    +F N+    +V NA     L+    QSG +  A ++  EM +  H V PD +T
Sbjct: 373 RVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVS--HGVLPDVMT 430

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
            G L+    + G++++A E+++ + K  +     +YT  I    + G  E A +++  + 
Sbjct: 431 YGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLP 490

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            KGV P+ +  + +I      G +  A  +L++ +  G +    +Y++L+ A     +  
Sbjct: 491 CKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLT 550

Query: 314 KALELYEHMKSIKLKPTVSTMNALITAL 341
            + +L E MKS       S++  +I  L
Sbjct: 551 ASAKLIEEMKSCGFSADASSIKMVIDML 578



 Score = 42.4 bits (98), Expect = 0.73,   Method: Compositional matrix adjust.
 Identities = 33/164 (20%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +  ++   V   E   S ++D      K + A  + QE         ++ +S    A + 
Sbjct: 36  FSSISNGNVCFRERLRSGIVDI-----KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIAR 90

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            K +   L+  + ++   +   + T+N +I   C   +      VL  +  LG  P+T T
Sbjct: 91  TKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTT 150

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           ++ L+     +  V   ++L+ +  E+G  P++V +  I+ G+C
Sbjct: 151 FNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGIC 194


>gi|224069250|ref|XP_002302937.1| predicted protein [Populus trichocarpa]
 gi|222844663|gb|EEE82210.1| predicted protein [Populus trichocarpa]
          Length = 564

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/443 (22%), Positives = 196/443 (44%), Gaps = 57/443 (12%)

Query: 32  YNRLIRQGRISECID----LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           Y  +I     S+ +D       +M  KGL+    ++++   ++ +S    ++A+ FF  +
Sbjct: 96  YESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSN-CFEKAWLFFNEL 154

Query: 88  PNPT---LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV- 143
                  + +F +++  C  + + + +FQ+L L+Q+ GL  +  +YTTLI  C K+G + 
Sbjct: 155 KERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNGDIE 214

Query: 144 ------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                 D M E  +  ++  F  LI    + G     FD+  +M  +++ + P+  T   
Sbjct: 215 RARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKM--KINGLFPNLYTYNC 272

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN-CCSQTGDWEFACSVYDDMTKK 255
           LM      G++ RA +++  + +  ++     Y   I   C +   WE A  + D M K 
Sbjct: 273 LMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWE-AEKLVDQMKKA 331

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW--- 312
            V P+ +  + LI      G ++ A  +L + K+ G+S  +++Y+ L+   S A NW   
Sbjct: 332 AVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGV 391

Query: 313 --------------------------------QKALELYEHMKSIKLKPTVSTMNALITA 340
                                           +KA ++Y  M+   L P V     LI  
Sbjct: 392 ADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHG 451

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           LC    + ++ ++   M  + + P+ + Y+ ++    ++D+    L LL + +  G++PN
Sbjct: 452 LCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPN 511

Query: 401 LVMFKCIIGMCSR--RYEKARTL 421
           +  +  IIG+  +  ++E+A  L
Sbjct: 512 VASYSSIIGVLCKDGKWEEAEVL 534



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 197/441 (44%), Gaps = 65/441 (14%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKADCKLYTTLITTCAKSGKVDA 145
           NP+++T  +  S+  +   S+   + L    E    GL     ++ +L+ +  +S   + 
Sbjct: 87  NPSMTTALLYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEK 146

Query: 146 MF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            +       E VK D   F  +I  C ++G +D++F +L  +  +   + P+ +    L+
Sbjct: 147 AWLFFNELKERVKFDVYSFGIMIKGCCENGNLDKSFQLLGLL--QDMGLSPNVVIYTTLI 204

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
             C   G ++RAR  +  + +  +      +T+ IN   + G  +    +++ M   G+ 
Sbjct: 205 DGCCKNGDIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLF 264

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALE 317
           P+    + L++     GK+  AF++  E + +G+   +++Y++L+G  C   + W+ A +
Sbjct: 265 PNLYTYNCLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWE-AEK 323

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL---- 373
           L + MK   + P + T N LI   CD   L K   +L  +KS GL P+ +TY+IL+    
Sbjct: 324 LVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYS 383

Query: 374 ------------------------VACE-------RKDDVEVGLMLLSQAKEDGVIPNLV 402
                                   V C        R  ++E    + S  ++ G++P++ 
Sbjct: 384 KAGNWKGVADLAREMEGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVY 443

Query: 403 MFKCII-GMCSRRYEKA-----RTLNE-HV----LSFNS---GRPQIENKWTSLALMVYR 448
           ++  +I G+C +   K      R++ E HV    + +N+   G  + +N + +L L+  R
Sbjct: 444 VYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLL--R 501

Query: 449 EAIVAGTIPTVEVVSKVLGCL 469
           E    G +P V   S ++G L
Sbjct: 502 EMEAKGLVPNVASYSSIIGVL 522



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 96/426 (22%), Positives = 188/426 (44%), Gaps = 33/426 (7%)

Query: 129 LYTTLITTCAKSGKVDA--MFENVKPDR------VVFNALITACGQSGAVDRAFDVLAEM 180
           LY ++I    KS  +D   +F N   D+       +FN+L+ +  +S   ++A+    E+
Sbjct: 95  LYESIINAHLKSQLLDKALIFFNEMVDKGLVFRPNIFNSLLGSLVRSNCFEKAWLFFNEL 154

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
              V     D  + G ++K C   G +D++ ++  ++    +     +YT  I+ C + G
Sbjct: 155 KERV---KFDVYSFGIMIKGCCENGNLDKSFQLLGLLQDMGLSPNVVIYTTLIDGCCKNG 211

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
           D E A   +D M + G++ ++   + LI+     G  +  F++ ++ K  G+   + +Y+
Sbjct: 212 DIERARLFFDKMGEMGLVANQYTFTVLINGLFKKGLKKDGFDLFEKMKINGLFPNLYTYN 271

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
            LM          +A +L++ M+   ++  V T N LI  +C  +++ +  +++  MK  
Sbjct: 272 CLMNEYCGEGKICRAFDLFDEMRERGVEANVVTYNTLIGGMCREERVWEAEKLVDQMKKA 331

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
            + PN ITY+ L+       +++    LL Q K +G+ P+LV +  +I   S+   ++  
Sbjct: 332 AVSPNLITYNTLIGGFCDVGNLDKASSLLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGV 391

Query: 419 RTLNEHVLSFNSGRPQIENKWTSLALM--------------VYREAIVAGTIPTVEVVSK 464
             L   +     GR    +K T   L+              +Y      G +P V V   
Sbjct: 392 ADLAREM----EGRGISPSKVTCTVLIDAYVRLQEMEKAFQIYSSMEKFGLVPDVYVYGV 447

Query: 465 VLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFG 522
           ++  L +  N     +L  ++G            ++I G+ + D   RA  LL E  + G
Sbjct: 448 LIHGLCMKGNMKESSKLFRSMGEMHVEPSDVIYNTMIHGYCKEDNSYRALRLLREMEAKG 507

Query: 523 IVPCVS 528
           +VP V+
Sbjct: 508 LVPNVA 513



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 139/320 (43%), Gaps = 15/320 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G   +  DL E M+  GL      Y+      C   K I  AF  F  +     
Sbjct: 240 NGLFKKGLKKDGFDLFEKMKINGLFPNLYTYNCLMNEYCGEGK-ICRAFDLFDEMRERGV 298

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---A 145
              + T+N L+      +    A +++  +++A +  +   Y TLI      G +D   +
Sbjct: 299 EANVVTYNTLIGGMCREERVWEAEKLVDQMKKAAVSPNLITYNTLIGGFCDVGNLDKASS 358

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           + + +K     P  V +N LI    ++G      D+  EM  E   + P  +T   L+ A
Sbjct: 359 LLDQLKSNGLSPSLVTYNILIEGYSKAGNWKGVADLAREM--EGRGISPSKVTCTVLIDA 416

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                ++++A ++Y  + K+ +     VY + I+     G+ + +  ++  M +  V P 
Sbjct: 417 YVRLQEMEKAFQIYSSMEKFGLVPDVYVYGVLIHGLCMKGNMKESSKLFRSMGEMHVEPS 476

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           +V  + +I           A  +L+E + +G+   + SYSS++G       W++A  L +
Sbjct: 477 DVIYNTMIHGYCKEDNSYRALRLLREMEAKGLVPNVASYSSIIGVLCKDGKWEEAEVLLD 536

Query: 321 HMKSIKLKPTVSTMNALITA 340
            M  ++LKP+ S +N +  A
Sbjct: 537 KMIELQLKPSASILNMISKA 556


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 150/329 (45%), Gaps = 10/329 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           PT+ T+++LM      +D+E    +L  ++  G++ +   YT  I    ++G+++  +  
Sbjct: 204 PTVRTYSVLMLAFGKRRDAETVVGLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRI 263

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E  KPD V    LI     +G +  A DV  +M A      PD +T   L+  C
Sbjct: 264 LRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQ--KPDRVTYITLLDKC 321

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            ++G      E++  +           YT A++   Q G  + A  V+D+M +KG+IP +
Sbjct: 322 GDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQ 381

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++LI     A +   A E+       G +    ++   +     +    KAL+ YE 
Sbjct: 382 YSYNSLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYEL 441

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MKS  + P V   NA++  L    +L     V  ++K++G+ P+ ITY++++  C +  +
Sbjct: 442 MKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASN 501

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
            +  + + ++  E+   P+++    +I M
Sbjct: 502 ADEAMKIFAEMIENRCAPDVLAMNSLIDM 530



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 186/432 (43%), Gaps = 58/432 (13%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LI    + G   E +D+ + M   G++   + Y        K + A        +
Sbjct: 172 YTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLGE 231

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + ++ + + V   +   E A+++LR ++E G K D    T LI     +G+
Sbjct: 232 MEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGR 291

Query: 143 V----DAMFE----NVKPDRVVFNALITACGQSG-------------------------- 168
           +    D  ++    + KPDRV +  L+  CG SG                          
Sbjct: 292 LADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTA 351

Query: 169 ---------AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
                     VD A DV  EM  +   + P   +  +L+     A + +RA E++  +  
Sbjct: 352 AVDALCQVGRVDEALDVFDEMKQK--GIIPQQYSYNSLISGFLKADRFNRALELFNHM-- 407

Query: 220 YNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
            NI G TP  YT  + IN   ++G+   A   Y+ M  KG++PD V  +A++      G+
Sbjct: 408 -NIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGR 466

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           +  A  +  E K  GIS   I+Y+ ++  CS A N  +A++++  M   +  P V  MN+
Sbjct: 467 LGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNS 526

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           LI  L    +  +  ++  ++K + L P   TY+ LL    R+  V+  + LL     + 
Sbjct: 527 LIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNS 586

Query: 397 VIPNLVMFKCII 408
             PN++ +  ++
Sbjct: 587 FPPNIITYNTVL 598



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/422 (20%), Positives = 173/422 (40%), Gaps = 50/422 (11%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNV-CKSQKA 76
           A  V   ++SY   IR     GR+ E   +L  ME +G    D V +     + C + + 
Sbjct: 234 ARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGC-KPDVVTNTVLIQILCDAGRL 292

Query: 77  IKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
                 F+K+  +   P   T+  L+  C  S DS    ++   ++  G   +   YT  
Sbjct: 293 ADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAA 352

Query: 134 ITTCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMN---- 181
           +    + G+VD    +F+ +K     P +  +N+LI+   ++   +RA ++   MN    
Sbjct: 353 VDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGP 412

Query: 182 -----------------------------AEVHPVDPDHITIGALMKACANAGQVDRARE 212
                                         +   + PD +   A++   A  G++  A+ 
Sbjct: 413 TPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKR 472

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           V+  +    I      YT+ I CCS+  + + A  ++ +M +    PD + +++LID   
Sbjct: 473 VFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDMLY 532

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            AG+   A++I  E K   +     +Y++L+         ++ ++L E M S    P + 
Sbjct: 533 KAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNII 592

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N ++  LC   ++   +++L  M   G  P+  +Y+ ++    ++  ++    +  Q 
Sbjct: 593 TYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEGRLDEAFWMFCQM 652

Query: 393 KE 394
           K+
Sbjct: 653 KK 654



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 105/472 (22%), Positives = 183/472 (38%), Gaps = 59/472 (12%)

Query: 29   LHSYNR----LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIK 78
            L SYN     L+++GR+ E   +           M KV    +  VC           +K
Sbjct: 626  LSSYNTVMYGLVKEGRLDEAFWMF--------CQMKKVLAPDYATVCTILPSFVRSGLMK 677

Query: 79   EAF---RFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            EA    R + L P+  +  S+ + LM        +E + +    +  +GL  D    + +
Sbjct: 678  EALHTVREYILQPDSKVDRSSVHSLMEGILKRDGTEKSIEFAENIASSGLLLDDLFLSPI 737

Query: 134  ITTCAKSGKVDAMFENVKPDRVV--------FNALITACGQSGAVDRAFDVLAEMNAEVH 185
            I    K  +  A  E VK    +        +NALI        +D A ++ +EM     
Sbjct: 738  IRHFCKHKEALAAHELVKKFENLGVSLKTGSYNALICGLVDEDLIDIAEELFSEMKR--L 795

Query: 186  PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
              DPD  T   ++ A   + +++   ++ + +H    K T   Y   I+   ++   + A
Sbjct: 796  GCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEA 855

Query: 246  CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             ++Y  +  +G  P       L+D     G +E A  +  E    G       Y+ L+  
Sbjct: 856  INLYYQLMSEGFSPTPCTYGPLLDGLLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNG 915

Query: 306  CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
               A + +K  EL+E M    + P + +   +I  LC   +L   +     +  +GL P+
Sbjct: 916  YRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPD 975

Query: 366  TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---------GMCSRRYE 416
             ITY++L+    +   +E  L L +  ++ G+ PNL  +  +I             + YE
Sbjct: 976  LITYNLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYE 1035

Query: 417  K--ARTLNEHVLSFN--------SGRPQIENKWTSLALMVYREAIVAGTIPT 458
            +  A+    +V ++N        SG P  EN     A   Y   IV G  P 
Sbjct: 1036 ELLAKGWKPNVFTYNALIRGYSVSGSP--EN-----AFAAYGRMIVGGCRPN 1080



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/337 (19%), Positives = 144/337 (42%), Gaps = 16/337 (4%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           K   Y  +V     + + L + GR+ E +D+ ++M++KG++     Y++      K+ + 
Sbjct: 338 KADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADR- 396

Query: 77  IKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
              A   F  +    P P   T  + ++    S +S  A +   L++  G+  D      
Sbjct: 397 FNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNA 456

Query: 133 LITTCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           ++   AK+G++     +F  +K     PD + +  +I  C ++   D A  + AEM    
Sbjct: 457 VLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIE-- 514

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
           +   PD + + +L+     AG+ + A +++  + + N++ T   Y   +    + G  + 
Sbjct: 515 NRCAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGLGREGKVKE 574

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
              + + M      P+ +  + ++D     G+V  A ++L      G    + SY+++M 
Sbjct: 575 VMQLLEGMNSNSFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMY 634

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
                    +A  ++  MK + L P  +T+  ++ + 
Sbjct: 635 GLVKEGRLDEAFWMFCQMKKV-LAPDYATVCTILPSF 670



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 95/416 (22%), Positives = 165/416 (39%), Gaps = 33/416 (7%)

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MFE-NVKPDRVVFNALITAC 164
           QV  L+Q   +KA+   + T+       G + +       M E  +  +   +N LI   
Sbjct: 122 QVFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLIYFL 181

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
            +SG    A DV   M A+   V P   T   LM A    G+   A  V  ++ +   +G
Sbjct: 182 VKSGFDREAMDVYKAMAAD--GVVPTVRTYSVLMLA---FGKRRDAETVVGLLGEMEARG 236

Query: 225 T-PEVY--TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
             P VY  TI I    Q G  E A  +   M ++G  PD V  + LI     AG++  A 
Sbjct: 237 VRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAK 296

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           ++  + K        ++Y +L+  C ++ + +   E++  +K+      V +  A + AL
Sbjct: 297 DVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDAL 356

Query: 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
           C   ++ + ++V  +MK  G+ P   +Y+ L+    + D     L L +     G  PN 
Sbjct: 357 CQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNRALELFNHMNIHGPTPNG 416

Query: 402 VMFKCIIGMCSRRYEKARTLNEHVLSFNSG-RPQI-----------ENKWTSLALMVYRE 449
                 I    +  E  + L  + L  + G  P +           +     +A  V+ E
Sbjct: 417 YTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGLAKTGRLGMAKRVFHE 476

Query: 450 AIVAGTIPTVEVVSKVLGCLQLPYNAD----IRERLVENLGVSADALKRSNLCSLI 501
               G  P     + ++ C     NAD    I   ++EN   + D L  ++L  ++
Sbjct: 477 LKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENR-CAPDVLAMNSLIDML 531



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 145/325 (44%), Gaps = 19/325 (5%)

Query: 25   VSEQLHSYNRLIRQGRISECIDLLED----MERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
            VS +  SYN LI      + ID+ E+    M+R G    +  YH     + KS + I++ 
Sbjct: 762  VSLKTGSYNALICGLVDEDLIDIAEELFSEMKRLGCDPDEFTYHLILDAMGKSMR-IEDM 820

Query: 81   FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             +  + + N     T  T+N ++S    SK  + A  +   +   G       Y  L+  
Sbjct: 821  LKIQEEMHNKGYKSTYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDG 880

Query: 137  CAKSGKVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
              K G ++   A+F+ +     +P+  ++N L+     +G  ++  ++   M  +   ++
Sbjct: 881  LLKDGNIEDAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQ--GMN 938

Query: 189  PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
            PD  +   ++      G+++     +K +    ++     Y + I+   ++G  E A S+
Sbjct: 939  PDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGLGKSGRLEEALSL 998

Query: 249  YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            Y+DM KKG+ P+    ++LI + G AGK   A ++ +E   +G    + +Y++L+   S 
Sbjct: 999  YNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRGYSV 1058

Query: 309  AKNWQKALELYEHMKSIKLKPTVST 333
            + + + A   Y  M     +P  ST
Sbjct: 1059 SGSPENAFAAYGRMIVGGCRPNSST 1083



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 111/273 (40%), Gaps = 15/273 (5%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           LM+A    G+V    +V+ ++ +  IK     +          G    A      M + G
Sbjct: 110 LMRA---HGRVGDVAQVFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAG 166

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           ++ +    + LI F   +G    A ++ +     G+   + +YS LM A    ++ +  +
Sbjct: 167 IVLNAYTYNGLIYFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVV 226

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VA 375
            L   M++  ++P V +    I  L    +L +   +L  M+  G  P+ +T ++L+ + 
Sbjct: 227 GLLGEMEARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQIL 286

Query: 376 CE--RKDDVE--VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE------KARTLNEHV 425
           C+  R  D +     M  S  K D V    ++ KC     SR         KA   N++V
Sbjct: 287 CDAGRLADAKDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNV 346

Query: 426 LSFNSGRPQI-ENKWTSLALMVYREAIVAGTIP 457
           +S+ +    + +      AL V+ E    G IP
Sbjct: 347 VSYTAAVDALCQVGRVDEALDVFDEMKQKGIIP 379


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 181/382 (47%), Gaps = 26/382 (6%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106
           L  DM R  L      ++    ++C + K  + A    + +P P   T+N +++   S  
Sbjct: 475 LFADMFRLRLPLCTTTFNIMLRHLCSAGKPAR-ALELLRQMPRPNAVTYNTVIAGFCSRG 533

Query: 107 DSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAMFE---------NVKPDRVV 156
             + A  ++R ++E  G+  +   Y T+I+   K G+VD   +          VKP+ V+
Sbjct: 534 RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 593

Query: 157 FNALITACGQSGAVDRAF---DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           +NALI      G +D A    D + E    +        T   L+ A    G   R  E 
Sbjct: 594 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVA-----TYNLLVHALFMDG---RGTEA 645

Query: 214 YKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           Y+++ +   KG  P+V+T  I IN   + G+ + A  ++++M+++GV    V  +ALI  
Sbjct: 646 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYA 705

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G+V+   ++  EA  +GI   ++ Y++L+ + S + N  +A E+   M+  ++ P 
Sbjct: 706 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 765

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
             T N L+  LC   ++ +  +++ +M   G+ P+ +TY+ L+     K DV+  L + +
Sbjct: 766 DVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRN 825

Query: 391 QAKEDGVIPNLVMFKCII-GMC 411
           +    G  P L+ +  +I G+C
Sbjct: 826 EMMNKGFNPTLLTYNALIQGLC 847



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 160/370 (43%), Gaps = 23/370 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
           +YN +I     +GR+   +D++ +M ER G+      Y       CK  + + EA + F 
Sbjct: 521 TYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGR-VDEAVKVFD 579

Query: 85  ----KLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
               K    P    +N L+   C   K         R+V E G+      Y  L+     
Sbjct: 580 EMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMV-ERGVAMTVATYNLLVHALFM 638

Query: 140 SGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            G+    +E V+        PD   +N LI    + G V +A ++   M+     V    
Sbjct: 639 DGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSR--RGVRATV 696

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T  AL+ A +  GQV    +++    +  I+    +Y   IN  S +G+ + A  +  +
Sbjct: 697 VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 756

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M KK + PD+V  + L+      G+V+ A +++ E   +GI   +++Y++L+   S   +
Sbjct: 757 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGD 816

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            + AL +   M +    PT+ T NALI  LC   Q      ++ +M   G+ P+  TY  
Sbjct: 817 VKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYIS 876

Query: 372 LLVACERKDD 381
           L+     +D+
Sbjct: 877 LIEGLTTEDE 886



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   +++   +AG+  RA E+ + + + N       Y   I      G  + A  +  +M
Sbjct: 490 TFNIMLRHLCSAGKPARALELLRQMPRPNAV----TYNTVIAGFCSRGRVQAALDIMREM 545

Query: 253 TKKG-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAK 310
            ++G + P++     +I      G+V+ A ++  E   +G +    + Y++L+G   +  
Sbjct: 546 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 605

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
               AL   + M    +  TV+T N L+ AL    +  +  E++ +M   GL P+  TY+
Sbjct: 606 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYN 665

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           IL+    ++ +V+  L +       GV   +V +  +I   S++
Sbjct: 666 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 709



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 106/253 (41%), Gaps = 37/253 (14%)

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           +  +    K+  + +   S   L+ A  +A     A  L+  M  ++L    +T N ++ 
Sbjct: 441 SLRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLR 496

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVI 398
            LC   +  + +E+L  M      PN +TY+ ++     +  V+  L ++ + +E  G+ 
Sbjct: 497 HLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIA 552

Query: 399 PNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 456
           PN   +  +I G C   R ++A  + + +L+    +P+           V   A++ G  
Sbjct: 553 PNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPE----------AVMYNALIGGYC 602

Query: 457 PTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCS--LIDGFGEYDPRAFSL 514
              ++ + +L           R+R+VE  GV+      + L     +DG G     A+ L
Sbjct: 603 DQGKLDTALL----------YRDRMVER-GVAMTVATYNLLVHALFMDGRGT---EAYEL 648

Query: 515 LEEAASFGIVPCV 527
           +EE    G+ P V
Sbjct: 649 VEEMGGKGLAPDV 661


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 169/378 (44%), Gaps = 16/378 (4%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           V  +RFF+     K       F K +        + T N++++       +  A+ VL  
Sbjct: 89  VDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGK 148

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKV-------DAMFEN-VKPDRVVFNALITACGQSGA 169
           V + G + D   + TLI      GKV       D M EN  +PD V +N+++    +SG 
Sbjct: 149 VMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGD 208

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
              A D+L +M  E   V  D  T   ++ +    G +D A  ++K +    IK +   Y
Sbjct: 209 TSLALDLLRKM--EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTY 266

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
              +    + G W     +  DM  + ++P+ +  + L+D     GK++ A E+ +E   
Sbjct: 267 NSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMIT 326

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           +GIS  II+Y++LM          +A  + + M   K  P + T  +LI   C   ++  
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDD 386

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
            M+V  ++   GL  N +TYSIL+    +   +++   L  +    GV+P+++ +  ++ 
Sbjct: 387 GMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD 446

Query: 409 GMCSR-RYEKARTLNEHV 425
           G+C   + EKA  + E +
Sbjct: 447 GLCDNGKLEKALEIFEDL 464



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 169/395 (42%), Gaps = 34/395 (8%)

Query: 20  NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           N   DV       + L R G I   I L ++ME KG+      Y++    +CK+ K    
Sbjct: 223 NVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDG 282

Query: 80  AFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           A     +V     P + TFN+L+ V                V+E  L+   +LY  +IT 
Sbjct: 283 ALLLKDMVSREIVPNVITFNVLLDV---------------FVKEGKLQEANELYKEMIT- 326

Query: 137 CAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                        + P+ + +N L+        +  A ++L  M    +   PD +T  +
Sbjct: 327 -----------RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVR--NKCSPDIVTFTS 373

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+K      +VD   +V++ I K  +      Y+I +    Q+G  + A  ++ +M   G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKA 315
           V+PD +    L+D     GK+E A EI ++ +   + +GI+ Y++++ G C   K  + A
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK-VEDA 492

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             L+  +    +KP V T   +I+ LC    L +   +L  M+  G  PN  TY+ L+ A
Sbjct: 493 WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
             R  D+     L+ + K  G   +    K +I M
Sbjct: 553 HLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDM 587



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 187/426 (43%), Gaps = 83/426 (19%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI+    +G++SE + L++ M   G               C+              
Sbjct: 160 TFNTLIKGLFLEGKVSEAVVLVDRMVENG---------------CQ-------------- 190

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              P + T+N +++    S D+  A  +LR ++E  +KAD   Y+T+I +  + G +DA 
Sbjct: 191 ---PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247

Query: 147 F--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                    + +K   V +N+L+    ++G  +    +L +M +    + P+ IT   L+
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS--REIVPNVITFNVLL 305

Query: 199 KACANAGQVDRAREVYK-MIHK--------YNI------------------------KGT 225
                 G++  A E+YK MI +        YN                         K +
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 226 PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
           P++  +T  I         +    V+ +++K+G++ + V  S L+     +GK++ A E+
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 284 LQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
            QE  + G+   +++Y  L+ G C N K  +KALE++E ++  K+   +     +I  +C
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGK-LEKALEIFEDLQKSKMDLGIVMYTTIIEGMC 484

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
            G ++     +   +   G+ PN +TY++++    +K  +    +LL + +EDG  PN  
Sbjct: 485 KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDC 544

Query: 403 MFKCII 408
            +  +I
Sbjct: 545 TYNTLI 550



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 33/164 (20%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +  ++   V   E   S ++D      K + A  + QE         ++ +S    A + 
Sbjct: 46  FSSISNGNVCFRERLRSGIVDI-----KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIAR 100

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            K +   L+  + ++   +   + T+N +I   C   +      VL  +  LG  P+T T
Sbjct: 101 TKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTT 160

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           ++ L+     +  V   ++L+ +  E+G  P++V +  I+ G+C
Sbjct: 161 FNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGIC 204


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 181/382 (47%), Gaps = 26/382 (6%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106
           L  DM R  L      ++    ++C + K  + A    + +P P   T+N +++   S  
Sbjct: 470 LFADMFRLRLPLCTTTFNIMLRHLCSAGKPAR-ALELLRQMPRPNAVTYNTVIAGFCSRG 528

Query: 107 DSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAMFE---------NVKPDRVV 156
             + A  ++R ++E  G+  +   Y T+I+   K G+VD   +          VKP+ V+
Sbjct: 529 RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 588

Query: 157 FNALITACGQSGAVDRAF---DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           +NALI      G +D A    D + E    +        T   L+ A    G   R  E 
Sbjct: 589 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVA-----TYNLLVHALFMDG---RGTEA 640

Query: 214 YKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           Y+++ +   KG  P+V+T  I IN   + G+ + A  ++++M+++GV    V  +ALI  
Sbjct: 641 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYA 700

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G+V+   ++  EA  +GI   ++ Y++L+ + S + N  +A E+   M+  ++ P 
Sbjct: 701 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 760

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
             T N L+  LC   ++ +  +++ +M   G+ P+ +TY+ L+     K DV+  L + +
Sbjct: 761 DVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGDVKDALRIRN 820

Query: 391 QAKEDGVIPNLVMFKCII-GMC 411
           +    G  P L+ +  +I G+C
Sbjct: 821 EMMNKGFNPTLLTYNALIQGLC 842



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 160/370 (43%), Gaps = 23/370 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
           +YN +I     +GR+   +D++ +M ER G+      Y       CK  + + EA + F 
Sbjct: 516 TYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGR-VDEAVKVFD 574

Query: 85  ----KLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
               K    P    +N L+   C   K         R+V E G+      Y  L+     
Sbjct: 575 EMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMV-ERGVAMTVATYNLLVHALFM 633

Query: 140 SGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            G+    +E V+        PD   +N LI    + G V +A ++   M+     V    
Sbjct: 634 DGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSR--RGVRATV 691

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T  AL+ A +  GQV    +++    +  I+    +Y   IN  S +G+ + A  +  +
Sbjct: 692 VTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGE 751

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M KK + PD+V  + L+      G+V+ A +++ E   +GI   +++Y++L+   S   +
Sbjct: 752 MEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSMKGD 811

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            + AL +   M +    PT+ T NALI  LC   Q      ++ +M   G+ P+  TY  
Sbjct: 812 VKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDSTYIS 871

Query: 372 LLVACERKDD 381
           L+     +D+
Sbjct: 872 LIEGLTTEDE 881



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 49/224 (21%), Positives = 100/224 (44%), Gaps = 6/224 (2%)

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   +++   +AG+  RA E+ + + + N       Y   I      G  + A  +  +M
Sbjct: 485 TFNIMLRHLCSAGKPARALELLRQMPRPNAV----TYNTVIAGFCSRGRVQAALDIMREM 540

Query: 253 TKKG-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAK 310
            ++G + P++     +I      G+V+ A ++  E   +G +    + Y++L+G   +  
Sbjct: 541 RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 600

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
               AL   + M    +  TV+T N L+ AL    +  +  E++ +M   GL P+  TY+
Sbjct: 601 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYN 660

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           IL+    ++ +V+  L +       GV   +V +  +I   S++
Sbjct: 661 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKK 704



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 106/253 (41%), Gaps = 37/253 (14%)

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           +  +    K+  + +   S   L+ A  +A     A  L+  M  ++L    +T N ++ 
Sbjct: 436 SLRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLR 491

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVI 398
            LC   +  + +E+L  M      PN +TY+ ++     +  V+  L ++ + +E  G+ 
Sbjct: 492 HLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIA 547

Query: 399 PNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 456
           PN   +  +I G C   R ++A  + + +L+    +P+           V   A++ G  
Sbjct: 548 PNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPE----------AVMYNALIGGYC 597

Query: 457 PTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCS--LIDGFGEYDPRAFSL 514
              ++ + +L           R+R+VE  GV+      + L     +DG G     A+ L
Sbjct: 598 DQGKLDTALL----------YRDRMVER-GVAMTVATYNLLVHALFMDGRGT---EAYEL 643

Query: 515 LEEAASFGIVPCV 527
           +EE    G+ P V
Sbjct: 644 VEEMGGKGLAPDV 656


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 175/395 (44%), Gaps = 17/395 (4%)

Query: 45   IDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPTLSTFNMLMS- 100
            I L E M+  G+      Y       C+  +   A+    +  KL   P + T + L++ 
Sbjct: 715  ISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNG 774

Query: 101  VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAMF-ENVKP 152
             C S + SE    V ++    G + +   + TLI       K       +D M  +  +P
Sbjct: 775  YCHSKRISEAVALVDQMFV-TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQP 833

Query: 153  DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
            D V +  ++    + G  D AF++L +M  E   ++P  +    ++        +D A  
Sbjct: 834  DLVTYGVVVNGLCKRGDTDLAFNLLNKM--EQGKLEPGVLIYNTIIDGLCKYKHMDDALN 891

Query: 213  VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
            ++K +    I+     Y+  I+C    G W  A  +  DM ++ + PD    SALID   
Sbjct: 892  LFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFV 951

Query: 273  HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
              GK+  A ++  E   + I   I++YSSL+          +A +++E M S    P V 
Sbjct: 952  KEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVV 1011

Query: 333  TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
            T N LI   C   ++ + MEV  +M   GL  NT+TY+IL+    +  D ++   +  + 
Sbjct: 1012 TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEM 1071

Query: 393  KEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
              DGV PN++ +  ++ G+C   + EKA  + E++
Sbjct: 1072 VSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 1106



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 95/409 (23%), Positives = 187/409 (45%), Gaps = 52/409 (12%)

Query: 40   RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
            RISE + L++ M   G     +  + + H  F +  K+ +A+    R       P L T+
Sbjct: 780  RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHN-KASEAMALIDRMVAKGCQPDLVTY 838

Query: 96   NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-------- 147
             ++++      D++ AF +L  +++  L+    +Y T+I    K   +D           
Sbjct: 839  GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 898

Query: 148  ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
            + ++P+ V +++LI+     G    A  +L++M      ++PD  T  AL+ A    G++
Sbjct: 899  KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE--RKINPDVFTFSALIDAFVKEGKL 956

Query: 208  DRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGD-----WEFACS------------- 247
              A ++Y  + K +I  +   Y+  IN  C     D     +EF  S             
Sbjct: 957  VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 1016

Query: 248  ---------------VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
                           V+ +M+++G++ + V  + LI     AG  + A EI +E  + G+
Sbjct: 1017 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 1076

Query: 293  SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
               I++Y++L+ G C N K  +KA+ ++E+++  K++PT+ T N +I  +C   ++    
Sbjct: 1077 PPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 1135

Query: 352  EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
            ++  ++   G+ P+ + Y+ ++    RK   E    L  + KEDG +PN
Sbjct: 1136 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 1184



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 159/342 (46%), Gaps = 13/342 (3%)

Query: 82  RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +  KL   P   T   L++  C  ++ S+    V ++V E G K D   Y  +I +  K+
Sbjct: 248 KMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV-EIGYKPDIVAYNAIIDSLCKT 306

Query: 141 GKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            +V+  F+         ++P+ V + AL+     S     A  +L++M  +   + P+ I
Sbjct: 307 KRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK--KITPNVI 364

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T  AL+ A    G+V  A+E+++ + + +I      Y+  IN        + A  ++D M
Sbjct: 365 TYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLM 424

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             KG + D V  + LI+    A +VE   ++ +E   +G+    ++Y++L+     A + 
Sbjct: 425 VSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDV 484

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            KA E +  M    + P + T N L+  LCD  +L K + +  DM+   +  + +TY+ +
Sbjct: 485 DKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTV 544

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           +    +   VE    L       G+ P++V +  ++ G+C++
Sbjct: 545 IRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTK 586



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 151/348 (43%), Gaps = 12/348 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P++  FN L+S     K  +    + + ++  G++ D   +  +I       +V    
Sbjct: 184 PFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLAL 243

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                      +PDRV   +L+    +   V  A  ++ +M  E+    PD +   A++ 
Sbjct: 244 SILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM-VEI-GYKPDIVAYNAIID 301

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           +     +V+ A + +K I +  I+     YT  +N    +  W  A  +  DM KK + P
Sbjct: 302 SLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP 361

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + +  SAL+D     GKV  A E+ +E     I   I++YSSL+          +A +++
Sbjct: 362 NVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMF 421

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M S      V + N LI   C   ++   M++  +M   GL  NT+TY+ L+    + 
Sbjct: 422 DLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQA 481

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
            DV+      SQ    G+ P++  +  ++ G+C     EKA  + E +
Sbjct: 482 GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 529



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 171/373 (45%), Gaps = 36/373 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   R+ R+S+ + L++ M   G       Y+A   ++CK+++ + +AF FFK +     
Sbjct: 266 NGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKR-VNDAFDFFKEIERKGI 324

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P + T+  L++ +C SS+ S+ A    RL+                         D + 
Sbjct: 325 RPNVVTYTALVNGLCNSSRWSDAA----RLLS------------------------DMIK 356

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + + P+ + ++AL+ A  ++G V  A ++  EM      +DPD +T  +L+       ++
Sbjct: 357 KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVR--MSIDPDIVTYSSLINGLCLHDRI 414

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A +++ ++           Y   IN   +    E    ++ +M+++G++ + V  + L
Sbjct: 415 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 474

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I     AG V+ A E   +    GIS  I +Y+ L+G   +    +KAL ++E M+  ++
Sbjct: 475 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 534

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
              + T   +I  +C   ++ +   +   +   GL P+ +TY+ ++     K  +     
Sbjct: 535 DLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEA 594

Query: 388 LLSQAKEDGVIPN 400
           L ++ K++G++ N
Sbjct: 595 LYTKMKQEGLMKN 607



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 103/415 (24%), Positives = 190/415 (45%), Gaps = 25/415 (6%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKAIKE 79
           D+ E+L S  RL R  ++++ IDL  DM +      ++D +++  A    + K    I  
Sbjct: 154 DLRERL-SKTRL-RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSA-IVKLKKYDVVISL 210

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             +   L     L TFN++++          A  +L  + + G + D     +L+    +
Sbjct: 211 GKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCR 270

Query: 140 SGKV-------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
             +V       D M E   KPD V +NA+I +  ++  V+ AFD   E+  E   + P+ 
Sbjct: 271 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI--ERKGIRPNV 328

Query: 192 ITIGALMKACANAGQ-VDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSV 248
           +T  AL+    N+ +  D AR +  MI K   K TP V  Y+  ++   + G    A  +
Sbjct: 329 VTYTALVNGLCNSSRWSDAARLLSDMIKK---KITPNVITYSALLDAFVKNGKVLEAKEL 385

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +++M +  + PD V  S+LI+      +++ A ++     ++G    ++SY++L+     
Sbjct: 386 FEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCK 445

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           AK  +  ++L+  M    L     T N LI        + K  E  S M   G+ P+  T
Sbjct: 446 AKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWT 505

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
           Y+ILL       ++E  L++    ++  +  ++V +  +I GMC + + E+A +L
Sbjct: 506 YNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSL 560



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 103/487 (21%), Positives = 206/487 (42%), Gaps = 54/487 (11%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFR- 82
           SYN LI    +  R+ + + L  +M ++GL+     Y+     FF      KA +E F  
Sbjct: 435 SYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKA-QEFFSQ 493

Query: 83  --FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             FF + P+  + T+N+L+     + + E A  +   +Q+  +  D   YTT+I    K+
Sbjct: 494 MDFFGISPD--IWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKT 551

Query: 141 GKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE------VHP 186
           GKV+  +        + +KPD V +  +++     G +     +  +M  E         
Sbjct: 552 GKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTL 611

Query: 187 VDPDHITIGA----LMKACANAGQVDR------AREVYKMIHKYNIKGTPEVY-TIAINC 235
            D D IT+ A     M +C  A  + +       ++   ++  ++ K + +    ++ N 
Sbjct: 612 SDGD-ITLSAELIKKMLSCGYAPSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNG 670

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
            S+    + A +++ +M K    P  +  S L+       K +    + ++ +N GI   
Sbjct: 671 LSEL-KLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHN 729

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
             +YS L+           AL +   M  +  +P + T+++L+   C   ++ + + ++ 
Sbjct: 730 HYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVD 789

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR- 413
            M   G  PNT+T++ L+      +     + L+ +    G  P+LV +  ++ G+C R 
Sbjct: 790 QMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG 849

Query: 414 ----------RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVV 462
                     + E+ + L   VL +N+    + + K    AL +++E    G  P V   
Sbjct: 850 DTDLAFNLLNKMEQGK-LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTY 908

Query: 463 SKVLGCL 469
           S ++ CL
Sbjct: 909 SSLISCL 915



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 94/451 (20%), Positives = 188/451 (41%), Gaps = 49/451 (10%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKE 79
           +S  + +YN L+      G + + + + EDM+++ + D+D V Y      +CK+ K ++E
Sbjct: 499 ISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM-DLDIVTYTTVIRGMCKTGK-VEE 556

Query: 80  AFRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           A+  F  +      P + T+  +MS +C      E      ++ QE  +K DC L    I
Sbjct: 557 AWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDI 616

Query: 135 TTCAK-------SGKVDAMFENVKPD--RVVFNALITACGQSG---------------AV 170
           T  A+        G   ++ +++K    +   + L    G++                 +
Sbjct: 617 TLSAELIKKMLSCGYAPSLLKDIKSGVCKKALSLLRAFSGKTSYDYREKLSRNGLSELKL 676

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
           D A  +  EM  +  P  P  I    L+ A A   + D    + + +    I      Y+
Sbjct: 677 DDAVALFGEM-VKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYS 734

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
           I INC  +      A +V   M K G  P+ V LS+L++   H+ ++  A  ++ +    
Sbjct: 735 ILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVT 794

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G     +++++L+          +A+ L + M +   +P + T   ++  LC        
Sbjct: 795 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 854

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG- 409
             +L+ M+   L P  + Y+ ++    +   ++  L L  + +  G+ PN+V +  +I  
Sbjct: 855 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 914

Query: 410 MCSR-RYEKA---------RTLNEHVLSFNS 430
           +C+  R+  A         R +N  V +F++
Sbjct: 915 LCNYGRWSDASRLLSDMIERKINPDVFTFSA 945



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 143/334 (42%), Gaps = 17/334 (5%)

Query: 35   LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPN 89
            L   GR S+   LL DM ERK  ++ D    +   +    +  + EA + +    K   +
Sbjct: 915  LCNYGRWSDASRLLSDMIERK--INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 972

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
            P++ T++ L++        + A Q+   +       D   Y TLI    K  +V+   E 
Sbjct: 973  PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEV 1032

Query: 150  VKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             +         + V +N LI    Q+G  D A ++  EM ++  P  P+ +T   L+   
Sbjct: 1033 FREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP--PNIMTYNTLLDGL 1090

Query: 202  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               G++++A  V++ + +  ++ T   Y I I    + G  E    ++ +++ KGV PD 
Sbjct: 1091 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDV 1150

Query: 262  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
            V  + +I      G  E A  + +E K  G       Y++L+ A     + + + EL + 
Sbjct: 1151 VAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKE 1210

Query: 322  MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
            M+S       ST+  +   L DG      +++LS
Sbjct: 1211 MRSCGFAGDASTIGLVTNMLHDGRLDKSFLDMLS 1244



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 153/357 (42%), Gaps = 19/357 (5%)

Query: 32   YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
            YN +I    +   + + ++L ++ME KG+      Y +    +C   +    +     ++
Sbjct: 873  YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 932

Query: 88   P---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                NP + TF+ L+           A ++   + +  +      Y++LI       ++D
Sbjct: 933  ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 992

Query: 145  ---AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                MFE     +  PD V +N LI    +   V+   +V  EM+     +  + +T   
Sbjct: 993  EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ--RGLVGNTVTYNI 1050

Query: 197  LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
            L++    AG  D A+E++K +    +      Y   ++   + G  E A  V++ + +  
Sbjct: 1051 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 1110

Query: 257  VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
            + P     + +I+    AGKVE  +++      +G+   +++Y++++       + ++A 
Sbjct: 1111 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 1170

Query: 317  ELYEHMKSIKLKPTVSTMNALITA-LCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
             L++ MK     P     N LI A L DGD+   + E++ +M+S G   +  T  ++
Sbjct: 1171 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDR-EASAELIKEMRSCGFAGDASTIGLV 1226


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 155/335 (46%), Gaps = 15/335 (4%)

Query: 73  SQKAIKEAF--RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           SQ  +  +F  +  KL   P + TF  L++        E A  ++  + E G+K D  +Y
Sbjct: 121 SQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMY 180

Query: 131 TTLITTCAKSGKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
           TT+I +  K+G V+   ++F+      ++PD V++ +L+     SG    A  +L  M  
Sbjct: 181 TTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTK 240

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
               + PD IT  AL+ A    G+   A E+Y  + + +I      YT  IN     G  
Sbjct: 241 R--KIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCV 298

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           + A  ++  M  KG  PD V  ++LI+      KV+ A +I  E   +G++   I+Y++L
Sbjct: 299 DEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTL 358

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-- 360
           +           A E++ HM S  + P + T N L+  LC   ++ K + +  DM+    
Sbjct: 359 IQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREM 418

Query: 361 -GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            G+ PN  TY++LL        +E  LM+    ++
Sbjct: 419 DGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRK 453



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 143/331 (43%), Gaps = 14/331 (4%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT-TLITTC--------- 137
           P P++  F  L++V A  K  +    +   +Q  G+  D  LYT  L+  C         
Sbjct: 68  PLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHD--LYTCNLLMNCFCQSSQPYL 125

Query: 138 AKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
           A S     M    +PD V F +LI        ++ A  ++ +M  E+  + PD +    +
Sbjct: 126 ASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQM-VEM-GIKPDVVMYTTI 183

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           + +    G V+ A  ++  +  Y I+    +YT  +N    +G W  A S+   MTK+ +
Sbjct: 184 IDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKI 243

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD +  +ALID     GK   A E+  E     I+  I +Y+SL+          +A +
Sbjct: 244 KPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQ 303

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           ++  M++    P V    +LI   C   ++   M++  +M   GL  NTITY+ L+    
Sbjct: 304 MFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFG 363

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +     V   + S     GV PN+  +  ++
Sbjct: 364 QVGKPNVAQEVFSHMVSRGVPPNIRTYNVLL 394



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 114/272 (41%), Gaps = 14/272 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            +++G+  +  +L  +M R  +      Y +     C  +  + EA + F L+      P
Sbjct: 257 FVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCM-EGCVDEARQMFYLMETKGCFP 315

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            +  +  L++     K  + A ++   + + GL  +   YTTLI    + GK +   E  
Sbjct: 316 DVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVF 375

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA-EVHPVDPDHITIGALMKAC 201
                  V P+   +N L+     +G V +A  +  +M   E+  V P+  T   L+   
Sbjct: 376 SHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGL 435

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G++++A  V++ + K  +      YTI I    + G  + A +++  +  KGV P+ 
Sbjct: 436 CYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNV 495

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           V  + +I      G    A  + ++ K  G+S
Sbjct: 496 VTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 181/382 (47%), Gaps = 26/382 (6%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106
           L  DM R  L      ++    ++C + K  + A    + +P P   T+N +++   S  
Sbjct: 28  LFADMFRLRLPLCTTTFNIMLRHLCSAGKPAR-ALELLRQMPRPNAVTYNTVIAGFCSRG 86

Query: 107 DSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAMFE---------NVKPDRVV 156
             + A  ++R ++E  G+  +   Y T+I+   K G+VD   +          VKP+ V+
Sbjct: 87  RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 146

Query: 157 FNALITACGQSGAVDRAF---DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           +NALI      G +D A    D + E    +        T   L+ A    G   R  E 
Sbjct: 147 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVA-----TYNLLVHALFMDG---RGTEA 198

Query: 214 YKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           Y+++ +   KG  P+V+T  I IN   + G+ + A  ++++M+++GV    V  ++LI  
Sbjct: 199 YELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYA 258

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G+V+   ++  EA  +GI   ++ Y++L+ + S + N  +A E+   M+  ++ P 
Sbjct: 259 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 318

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
             T N L+  LC   ++ +  +++ +M   G+ P+ +TY+ L+     K DV+  L + +
Sbjct: 319 DVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRN 378

Query: 391 QAKEDGVIPNLVMFKCII-GMC 411
           +    G  P L+ +  +I G+C
Sbjct: 379 EMMNKGFNPTLLTYNALIQGLC 400



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 164/391 (41%), Gaps = 36/391 (9%)

Query: 10  QFPYPNGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDM-ERKGLLDMDKVYH 64
           Q P PN               +YN +I     +GR+   +D++ +M ER G+      Y 
Sbjct: 66  QMPRPNAV-------------TYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYG 112

Query: 65  ARFFNVCKSQKAIKEAFRFF-----KLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLV 118
                 CK  + + EA + F     K    P    +N L+   C   K         R+V
Sbjct: 113 TVISGWCKVGR-VDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMV 171

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAV 170
            E G+      Y  L+      G+    +E V+        PD   +N LI    + G V
Sbjct: 172 -ERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNV 230

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
            +A ++   M+     V    +T  +L+ A +  GQV    +++    +  I+    +Y 
Sbjct: 231 KKALEIFENMSR--RGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 288

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             IN  S +G+ + A  +  +M KK + PD+V  + L+      G+V+ A +++ E   +
Sbjct: 289 ALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKR 348

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           GI   +++Y++L+   S   + + AL +   M +    PT+ T NALI  LC   Q    
Sbjct: 349 GIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDA 408

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDD 381
             ++ +M   G+ P+  TY  L+     +D+
Sbjct: 409 ENMVKEMVENGITPDDSTYISLIEGLTTEDE 439



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 103/224 (45%), Gaps = 6/224 (2%)

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   +++   +AG+  RA E+ + + + N        T+    CS+ G  + A  +  +M
Sbjct: 43  TFNIMLRHLCSAGKPARALELLRQMPRPN---AVTYNTVIAGFCSR-GRVQAALDIMREM 98

Query: 253 TKKG-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAK 310
            ++G + P++     +I      G+V+ A ++  E   +G +    + Y++L+G   +  
Sbjct: 99  RERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQG 158

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
               AL   + M    +  TV+T N L+ AL    +  +  E++ +M   GL P+  TY+
Sbjct: 159 KLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYN 218

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           IL+    ++ +V+  L +       GV   +V +  +I   S++
Sbjct: 219 ILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKK 262



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 104/245 (42%), Gaps = 37/245 (15%)

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           K+  + +   S   L+ A  +A     A  L+  M  ++L    +T N ++  LC   + 
Sbjct: 2   KSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKP 57

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKC 406
            + +E+L  M      PN +TY+ ++     +  V+  L ++ + +E  G+ PN   +  
Sbjct: 58  ARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGT 113

Query: 407 II-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 464
           +I G C   R ++A  + + +L+    +P+           V   A++ G     ++ + 
Sbjct: 114 VISGWCKVGRVDEAVKVFDEMLTKGEVKPE----------AVMYNALIGGYCDQGKLDTA 163

Query: 465 VLGCLQLPYNADIRERLVENLGVSADALKRSNLCS--LIDGFGEYDPRAFSLLEEAASFG 522
           +L           R+R+VE  GV+      + L     +DG G     A+ L+EE    G
Sbjct: 164 LL----------YRDRMVER-GVAMTVATYNLLVHALFMDGRG---TEAYELVEEMGGKG 209

Query: 523 IVPCV 527
           + P V
Sbjct: 210 LAPDV 214


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 161/345 (46%), Gaps = 21/345 (6%)

Query: 71  CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           C+  +     + F ++V     P +  +N ++     SK  + A  +L  +++ G+  D 
Sbjct: 162 CRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDV 221

Query: 128 KLYTTLITTCAKSGK-------VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAE 179
             Y +LI+    SG+       V  M +  + PD   FNALI AC + G V  A +   E
Sbjct: 222 VTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEE 281

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCC 236
           M      +DPD +T   L+       ++D A E++  +     KG  P+V  Y+I IN  
Sbjct: 282 MIRR--SLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVS---KGCFPDVVTYSILINGY 336

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            ++   E    ++ +M+++GV+ + V  + LI     AGK+  A EI +     G+   I
Sbjct: 337 CKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNI 396

Query: 297 ISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           I+Y+ L+ G C N K  +KAL +   M+   +   + T N +I  +C   ++    ++  
Sbjct: 397 ITYNVLLHGLCDNGK-IEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYC 455

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
            +   GL P+  TY+ +++   +K        L  + KEDG++PN
Sbjct: 456 SLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 155/340 (45%), Gaps = 14/340 (4%)

Query: 73  SQKAIKEAF--RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
           SQ ++  +F  +  KL   P++ TF  L++  C   +  +  +   ++V   G K +  +
Sbjct: 130 SQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG-MGYKPNVVI 188

Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y T+I    KS +VD   +         + PD V +N+LI+    SG    A  +++ M 
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMT 248

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
                + PD  T  AL+ AC   G+V  A E Y+ + + ++      Y++ I        
Sbjct: 249 KR--EIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSR 306

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            + A  ++  M  KG  PD V  S LI+    + KVE   ++  E   +G+    ++Y+ 
Sbjct: 307 LDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTI 366

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+     A     A E++  M    + P + T N L+  LCD  ++ K + +L+DM+  G
Sbjct: 367 LIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNG 426

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
           +  + +TY+I++    +  +V     +       G++P++
Sbjct: 427 MDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDI 466



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 152/350 (43%), Gaps = 17/350 (4%)

Query: 83  FFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITT 136
           FF +V   P P+++ F+ L+S  +  K  +    +   +Q  G+  +   C +       
Sbjct: 69  FFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCR 128

Query: 137 CAK-SGKVDAMFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-HPVDPD 190
           C++ S  +  + + +K    P  V F +L+    +    DR +D L   +  V     P+
Sbjct: 129 CSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRG---DRVYDALYMFDQMVGMGYKPN 185

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +    ++     + QVD A ++   + K  I      Y   I+    +G W  A  +  
Sbjct: 186 VVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVS 245

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            MTK+ + PD    +ALID     G+V  A E  +E   + +   I++YS L+       
Sbjct: 246 CMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYS 305

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
              +A E++  M S    P V T + LI   C   ++   M++  +M   G+  NT+TY+
Sbjct: 306 RLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYT 365

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 418
           IL+    R   + V   +  +    GV PN++ +  ++ G+C   + EKA
Sbjct: 366 ILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKA 415



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 126/264 (47%), Gaps = 7/264 (2%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           KP+ V++N +I    +S  VD A D+L  M  E   + PD +T  +L+    ++G+   A
Sbjct: 183 KPNVVIYNTIIDGLCKSKQVDNALDLLNRM--EKDGIGPDVVTYNSLISGLCSSGRWSDA 240

Query: 211 REVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
             +   + K  I   P+V+T    I+ C + G    A   Y++M ++ + PD V  S LI
Sbjct: 241 TRMVSCMTKREI--YPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI 298

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                  +++ A E+     ++G    +++YS L+     +K  +  ++L+  M    + 
Sbjct: 299 YGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVV 358

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
               T   LI   C   +L    E+   M   G+ PN ITY++LL        +E  L++
Sbjct: 359 RNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVI 418

Query: 389 LSQAKEDGVIPNLVMFKCII-GMC 411
           L+  +++G+  ++V +  II GMC
Sbjct: 419 LADMQKNGMDADIVTYNIIIRGMC 442



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 58/259 (22%), Positives = 126/259 (48%), Gaps = 21/259 (8%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAI 77
            ++   + ++N LI    ++GR+SE  +  E+M R+ L D D V Y    + +C   + +
Sbjct: 250 REIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL-DPDIVTYSLLIYGLCMYSR-L 307

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            EA   F  + +    P + T+++L++    SK  E   ++   + + G+  +   YT L
Sbjct: 308 DEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTIL 367

Query: 134 ITTCAKSGKVDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I    ++GK++         +F  V P+ + +N L+     +G +++A  +LA+M  + +
Sbjct: 368 IQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADM--QKN 425

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            +D D +T   +++    AG+V  A ++Y  ++   +      YT  +    + G    A
Sbjct: 426 GMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREA 485

Query: 246 CSVYDDMTKKGVIPDEVFL 264
            +++  M + G++P+E ++
Sbjct: 486 DALFRKMKEDGILPNECYV 504


>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
 gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 165/358 (46%), Gaps = 16/358 (4%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           GR  E   + E+M   GL    + Y+A      K+       F   ++  +   P   T+
Sbjct: 320 GRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEMERSGVLPNEQTY 379

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           ++L+    +++  E A  VL+ ++ + ++ +  +++ ++ +    G+    F+       
Sbjct: 380 SLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMED 439

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             V+PDR+ +N LI   G+   +D A      M +E   ++PD IT   L+     AG+ 
Sbjct: 440 SGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSE--GIEPDTITWNTLVDCHCKAGKH 497

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           DRA E+++ + +         + I IN       W+   ++  +M  +G++P+ V  + L
Sbjct: 498 DRAEELFEEMMEKGYLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTL 557

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ID  G +G+ + A E L + K  G+      Y++L+ A +      +A+  +  M+   L
Sbjct: 558 IDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGL 617

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDV 382
           KP++  +N+LI A     +  +   VL  MK   L P+ +TY+ L   L+  E+ D V
Sbjct: 618 KPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTYTTLMKALILVEKFDKV 675



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 154/328 (46%), Gaps = 10/328 (3%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDAMFENVK 151
           +N ++   A + D + A + L +VQ +GL        T+I     C ++ + +A+FE ++
Sbjct: 274 WNDIIVGFAKAGDLDKALEFLGVVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMR 333

Query: 152 -----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
                P    +NAL+    ++G +  A  V++EM  E   V P+  T   L+ A  NA +
Sbjct: 334 DNGLQPRTRAYNALLRGYVKAGLLRDAEFVVSEM--ERSGVLPNEQTYSLLIDAYGNAER 391

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            + AR V K +   N++    V++  +      G+W+    V  +M   GV PD +F + 
Sbjct: 392 WESARIVLKEMEASNVQPNAYVFSRILASYRDKGEWQKTFQVLREMEDSGVRPDRIFYNV 451

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LID  G    ++ A        ++GI    I++++L+     A    +A EL+E M    
Sbjct: 452 LIDTFGKFNCLDHAMATFDRMLSEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKG 511

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
             P  +T N +I +  D ++      +L++M+S GL PN +TY+ L+    +    +  +
Sbjct: 512 YLPCNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAI 571

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
             L   K  G+ P+  M+  ++   ++R
Sbjct: 572 ECLDDMKAAGLKPSSTMYNALLNAYAQR 599



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 75/333 (22%), Positives = 158/333 (47%), Gaps = 14/333 (4%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTLITTCAKSGK 142
           +++VP P   +  +L S+C SS     A+ V+  +Q+  L    +L Y+ LI    +S K
Sbjct: 127 YRVVPGPLWHS--LLKSLCTSSSSIPLAYAVVSWLQKHNLCFSYELLYSILIHALGQSEK 184

Query: 143 VDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH--ITIG 195
           +   F     +N+ P  + +NALI+AC ++  +++A +++  M  + +P D  +  + I 
Sbjct: 185 LYEAFLLSQKQNLTP--LTYNALISACARNNDIEKALNLICRMREDGYPSDLVNYSLIIR 242

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +LMK   N       +++Y+ I +  ++   +++   I   ++ GD + A      +   
Sbjct: 243 SLMKN--NRANSSILQKIYREIDRDKLEVDVQLWNDIIVGFAKAGDLDKALEFLGVVQGS 300

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G+      L  +I   G+ G+ E A  I +E ++ G+     +Y++L+     A   + A
Sbjct: 301 GLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAGLLRDA 360

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             +   M+   + P   T + LI A  + ++      VL +M++  + PN   +S +L +
Sbjct: 361 EFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILAS 420

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              K + +    +L + ++ GV P+ + +  +I
Sbjct: 421 YRDKGEWQKTFQVLREMEDSGVRPDRIFYNVLI 453


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/398 (22%), Positives = 187/398 (46%), Gaps = 33/398 (8%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFR 82
           +V + LH +++++ QG                   MD+V +A   N +CK  +  + A +
Sbjct: 95  EVKKSLHFHDKVVAQG-----------------FQMDQVSYATLLNGLCKIGET-RSALK 136

Query: 83  FFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             +++ +    P +  +N ++      K    A+ +   +   G+  +   Y+TLI    
Sbjct: 137 LLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFC 196

Query: 139 KSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
            +G++        + + +N+ P+   +  L+ A  + G V  A ++LA M  E   V P+
Sbjct: 197 LAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKE--GVKPN 254

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            ++   LM      G+V  A++++  + +  +      Y I I+   ++   + A ++  
Sbjct: 255 VVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLR 314

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           ++  K ++P+ V  S+LID     G++ +A ++L+E  ++G    +++Y+SL+ A    +
Sbjct: 315 EVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQ 374

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
           N  KA  L+  MK   ++P   T  ALI  LC G +     ++   +   G   N  TY+
Sbjct: 375 NLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYN 434

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +++    ++  ++  L + S+ +E+G IP+ V F+ II
Sbjct: 435 VMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIII 472



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/344 (22%), Positives = 156/344 (45%), Gaps = 23/344 (6%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN +I    +   ++E  DL  +M+ +G+      Y    +  C + + + EAF     +
Sbjct: 153 YNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLM-EAFGLLNEM 211

Query: 88  P----NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                NP + T+ +LM ++C   K  E A  +L ++ + G+K +   Y TL+      G+
Sbjct: 212 ILKNINPNVYTYTILMDALCKEGKVKE-AKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGE 270

Query: 143 VD---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHIT 193
           V     MF     + V P+   +N +I    +S  VD A ++L E+   +H  + P+ +T
Sbjct: 271 VQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREV---LHKNMVPNTVT 327

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +L+      G++  A ++ K ++          YT  ++   +  + + A +++  M 
Sbjct: 328 YSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMK 387

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           ++G+ P++   +ALID     G+ + A ++ Q    +G  + + +Y+ ++          
Sbjct: 388 ERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLD 447

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +AL +   M+     P   T   +I +L + DQ  K  ++L +M
Sbjct: 448 EALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEM 491



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 122/282 (43%), Gaps = 4/282 (1%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           ++PD    N LI      G +  +F VL ++    +   P+ IT+  LMK     G+V +
Sbjct: 41  IEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGY--QPNTITLNTLMKGLCLKGEVKK 98

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           +   +  +     +     Y   +N   + G+   A  +   +  +   P+ V  + +ID
Sbjct: 99  SLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIID 158

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                  V  A+++  E   +GI   +I+YS+L+     A    +A  L   M    + P
Sbjct: 159 GLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINP 218

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            V T   L+ ALC   ++ +   +L+ M   G+ PN ++Y+ L+       +V+    + 
Sbjct: 219 NVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMF 278

Query: 390 SQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNEHVLSFN 429
               + GV PN+  +  +I  +C S+R ++A  L   VL  N
Sbjct: 279 HTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKN 320



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 125/301 (41%), Gaps = 50/301 (16%)

Query: 216 MIHKYNIKGT-PEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           +  +  +KG  P+++T  I INC    G   F+ +V   + K G  P+ + L+ L+    
Sbjct: 32  LFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMKGLC 91

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
             G+V+ +     +   QG  +  +SY++L+         + AL+L   ++    +P V 
Sbjct: 92  LKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVV 151

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS---------------------- 370
             N +I  LC    + +  ++ S+M + G+ PN ITYS                      
Sbjct: 152 MYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEM 211

Query: 371 -------------ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK------CIIGMC 411
                        IL+ A  ++  V+    LL+   ++GV PN+V +       C+IG  
Sbjct: 212 ILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEV 271

Query: 412 SRRYEKARTL-----NEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKV 465
               +   T+     N +V S+N    ++ ++K    A+ + RE +    +P     S +
Sbjct: 272 QNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSL 331

Query: 466 L 466
           +
Sbjct: 332 I 332



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 91/210 (43%), Gaps = 5/210 (2%)

Query: 222 IKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
           ++ TP +  +   +    +   +  A S++  M  KG+ PD   L+ LI+   H G++  
Sbjct: 4   VRDTPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTF 63

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           +F +L +    G     I+ ++LM         +K+L  ++ + +   +    +   L+ 
Sbjct: 64  SFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLN 123

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
            LC   +    +++L  ++     PN + Y+ ++    +   V     L S+    G+ P
Sbjct: 124 GLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFP 183

Query: 400 NLVMFKCII-GMC--SRRYEKARTLNEHVL 426
           N++ +  +I G C   +  E    LNE +L
Sbjct: 184 NVITYSTLIYGFCLAGQLMEAFGLLNEMIL 213



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 12/183 (6%)

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           I+ ++ ++G+    K++  A+ L++ M+   ++P + T+N LI   C   Q+  +  VL 
Sbjct: 10  IMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLG 69

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
            +  LG  PNTIT + L+     K +V+  L    +    G   + V +  ++ G+C   
Sbjct: 70  KILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIG 129

Query: 415 YEKARTLNEHVLSFNSGRPQI-----------ENKWTSLALMVYREAIVAGTIPTVEVVS 463
             ++      ++   S RP +           ++K  + A  +Y E    G  P V   S
Sbjct: 130 ETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYS 189

Query: 464 KVL 466
            ++
Sbjct: 190 TLI 192



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 21/171 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y+ LI    + GRI+  +DLL++M  +G       Y +    +CK+Q   K    F K+
Sbjct: 327 TYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKM 386

Query: 87  VP---NPTLSTFNMLMS-VC--ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                 P   T+  L+  +C     K+++  FQ L LV+  G + +   Y  +I+   K 
Sbjct: 387 KERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHL-LVK--GCRINVWTYNVMISGLCKE 443

Query: 141 GKVD-------AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           G +D        M EN   PD V F  +I +  +    D+A  +L EM A+
Sbjct: 444 GMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAK 494


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 186/399 (46%), Gaps = 17/399 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RF 83
           +YN LI    RQG + E  +L++ M  KGL      Y+A    +CK+ K ++        
Sbjct: 291 TYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM 350

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K+  +P  +T+N+L+  C  + +   A ++   +   G+  D   ++ LI   +K+G +
Sbjct: 351 LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCL 410

Query: 144 DA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D     F ++K     PD V++  LI    ++G +  A  V  EM  +   +D   +T  
Sbjct: 411 DQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDV--VTYN 468

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++        +  A E++  + +  +      +T  IN  S+ G+   A ++++ M ++
Sbjct: 469 TILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQR 528

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + PD V  + LID      ++E   E+  +  ++ I    ISY  L+    N     +A
Sbjct: 529 NLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEA 588

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             L++ M     + T+ T N ++   C      K  E LS+M   G+ P+ ITY+ L+  
Sbjct: 589 FRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLING 648

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
             ++++++    L+++ +  G++P+++ +  I+   SR+
Sbjct: 649 FIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQ 687



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 162/351 (46%), Gaps = 15/351 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L++ G +    ++ +++ R G+       +     +CK+QK I+    F   +      P
Sbjct: 229 LVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQK-IENTKSFLSDMEEKGVFP 287

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------V 143
            + T+N L++        E AF+++  +   GLK     Y  +I    K+GK       +
Sbjct: 288 DVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVL 347

Query: 144 DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M +  + PD   +N L+  C ++  +  A  +  EM ++   V PD ++  AL+   +
Sbjct: 348 DEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQ--GVVPDLVSFSALIGLLS 405

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G +D+A + ++ +    +     +YTI I    + G    A  V D+M ++G + D V
Sbjct: 406 KNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVV 465

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + +++       +  A E+  E   +G+     ++++L+   S   N  KA+ L+E M
Sbjct: 466 TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMM 525

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
               LKP V T N LI   C G ++ K  E+ +DM S  + PN I+Y IL+
Sbjct: 526 IQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 576



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 143/326 (43%), Gaps = 53/326 (16%)

Query: 91  TLSTFNMLMSVCASSK---DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           +L +F+ ++ +   S+   D++    +LR+V+++G+ +  ++  +L+ T    G    +F
Sbjct: 131 SLQSFSAMIHILVRSRRLPDAQAV--ILRMVRKSGV-SRVEIVESLVLTYGNCGSNPLVF 187

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + +    V    L   C        AF VL      V  ++  +  +G L+K     G V
Sbjct: 188 DLLVRTYVQARKLREGC-------EAFRVLKSKGLCVS-INACNSLLGGLVKV----GWV 235

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A E+Y+ + +  ++       I IN   +    E   S   DM +KGV PD V  + L
Sbjct: 236 DLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTL 295

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I+     G +E AFE++     +G                                   L
Sbjct: 296 INAYCRQGLLEEAFELMDSMSGKG-----------------------------------L 320

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           KP V T NA+I  LC   +  +   VL +M  +G+ P+T TY+ILLV C R D++     
Sbjct: 321 KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER 380

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +  +    GV+P+LV F  +IG+ S+
Sbjct: 381 IFDEMPSQGVVPDLVSFSALIGLLSK 406



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 110/255 (43%), Gaps = 19/255 (7%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V    +++  LI    + G +++ + L E M ++ L      Y+      CK  +  K  
Sbjct: 495 VFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVN 554

Query: 81  FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             +  ++     P   ++ +L++   +      AF++   + E G +A      T++   
Sbjct: 555 ELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGY 614

Query: 138 AKSG---KVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            ++G   K D    N     + PD + +N LI    +   +DRAF ++ +M  E   + P
Sbjct: 615 CRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM--ENSGLLP 672

Query: 190 DHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           D IT   ++   +  G++  A  +  KMI +  +      YT  IN      + + A  V
Sbjct: 673 DVITYNVILNGFSRQGRMQEAELIMLKMIER-GVNPDRSTYTSLINGHVTQNNLKEAFRV 731

Query: 249 YDDMTKKGVIPDEVF 263
           +D+M ++G +PD+ F
Sbjct: 732 HDEMLQRGFVPDDKF 746


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 172/402 (42%), Gaps = 20/402 (4%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++ L  ++R  R G   E + LLE M RKG  + D +   +      + + I +A R  +
Sbjct: 90  TQMLKIFHRSCRSGNYIESLHLLETMVRKGY-NPDVILCTKLIKGFFTLRNIPKAVRVME 148

Query: 86  LVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++     P +  +N L++        + A +VL  ++      D   Y  +I +    GK
Sbjct: 149 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208

Query: 143 VDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +D         + +N +P  + +  LI A    G VD A  ++ EM +    + PD  T 
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS--RGLKPDMFTY 266

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDD 251
             +++     G VDRA   ++M+    +KG+ P+V  Y I +      G WE    +   
Sbjct: 267 NTIIRGMCKEGMVDRA---FEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTK 323

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M  +   P+ V  S LI      GK+E A  +L+  K +G++    SY  L+ A      
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
              A+E  E M S    P +   N ++  LC   +  + +E+   +  +G  PN+ +Y+ 
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 443

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +  A     D    L ++ +   +G+ P+ + +  +I    R
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCR 485



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/417 (24%), Positives = 182/417 (43%), Gaps = 28/417 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRF 83
           +YN LI    +  RI +   +L+ M  K        Y+    ++C   K   A+K   + 
Sbjct: 160 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQL 219

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 PT+ T+ +L+         + A +++  +   GLK D   Y T+I    K G V
Sbjct: 220 LSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279

Query: 144 DAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D  FE V+        PD + +N L+ A    G  +    ++ +M +E    DP+ +T  
Sbjct: 280 DRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE--KCDPNVVTYS 337

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT----IAINCCSQTGDWEFACSVYDD 251
            L+      G+++ A  + K++ +  +  TP+ Y+    IA  C  + G  + A    + 
Sbjct: 338 ILITTLCRDGKIEEAMNLLKLMKEKGL--TPDAYSYDPLIAAFC--REGRLDVAIEFLET 393

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M   G +PD V  + ++      GK + A EI  +    G S    SY+++  A  ++ +
Sbjct: 394 MISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGD 453

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +AL +   M S  + P   T N++I+ LC    + +  E+L DM+S    P+ +TY+I
Sbjct: 454 KIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNI 513

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI---IGMCSRRYEKARTLNEHV 425
           +L+   +   +E  + +L     +G  PN   +  +   IG    R E     N+ V
Sbjct: 514 VLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 190/400 (47%), Gaps = 20/400 (5%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           ++SYN L+      G + E ++   DME  G+ + D V +    N  +    I  A++  
Sbjct: 305 VYSYNILLHGLCVAGSMEEALEFTNDMENHGV-EPDIVTYNILANGFRILGLISGAWKVV 363

Query: 85  KLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + +     NP L T+ +L+       + E +F++   +   GLK     YT L+++  KS
Sbjct: 364 QRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKS 423

Query: 141 GKVDA----MFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G++D     + E     +KPD + ++ LI    + GAV+ A ++  EM ++   + P+  
Sbjct: 424 GRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSK--RIYPNSF 481

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              A++      G +  A+  +  + K ++     +Y I I+  ++ G+   A   Y  +
Sbjct: 482 VCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQI 541

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            +KG+ P  V  ++LI      GK+  A ++L   K  G+    ++Y++LM       + 
Sbjct: 542 IEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDM 601

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
               ++   M++  +KPT  T   ++  LC   +L +++++L  M + GL P+ ITY+ +
Sbjct: 602 HSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTV 661

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + +  +  D++    L +Q  +  + P+ V +  +I G+C
Sbjct: 662 IQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLC 701



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 175/387 (45%), Gaps = 17/387 (4%)

Query: 51  MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSK 106
           M + GLL     Y+     +C +  +++EA  F   + N    P + T+N+L +      
Sbjct: 296 MIKYGLLPDVYSYNILLHGLCVA-GSMEEALEFTNDMENHGVEPDIVTYNILANGFRILG 354

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFN 158
              GA++V++ +   GL  D   YT LI    + G ++  F        + +K   V + 
Sbjct: 355 LISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYT 414

Query: 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 218
            L+++  +SG +D A  +L EM  EV  + PD +T   L+      G V+ A E+Y+ + 
Sbjct: 415 VLLSSLCKSGRIDEAVILLHEM--EVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMC 472

Query: 219 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278
              I     V +  I+   + G    A   +D +TK  V  + +  + +ID     G + 
Sbjct: 473 SKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIG 532

Query: 279 AAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
            A    ++   +GIS  I++++SL+ G C   K   +A++L + +K   L PT  T   L
Sbjct: 533 EAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGK-LAEAVKLLDTIKVHGLVPTSVTYTTL 591

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           +   C+   +    ++L +M++  + P  ITY++++    ++  +   + LL      G+
Sbjct: 592 MNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGL 651

Query: 398 IPNLVMFKCIIGMCSRRYEKARTLNEH 424
            P+ + +  +I    + ++  +    H
Sbjct: 652 FPDQITYNTVIQSFCKAHDLQKAFQLH 678



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 150/339 (44%), Gaps = 13/339 (3%)

Query: 99  MSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVV 156
           M  CA S+      A  VL  ++   L+     Y +L+     +  +  ++  +K   V 
Sbjct: 173 MLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIKASGVP 232

Query: 157 FNA-----LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
            N      LI    +   +  A   L E   E     P  ++  ALM      G VD A+
Sbjct: 233 QNEYTNPILIDGLCRQSRLQDAVTFLRETGGE--EFGPSVVSFNALMSGFCKMGSVDVAK 290

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
             + M+ KY +      Y I ++     G  E A    +DM   GV PD V  + L +  
Sbjct: 291 SFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGF 350

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G +  A++++Q     G++  +++Y+ L+       N +++ +L E M S  LK ++
Sbjct: 351 RILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSI 410

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T   L+++LC   ++ + + +L +M+ +GL P+ +TYS+L+    ++  VE  + L  +
Sbjct: 411 VTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEE 470

Query: 392 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS 430
                + PN  +   II   S  +EK   ++E  + F+S
Sbjct: 471 MCSKRIYPNSFVCSAII---SGLFEKG-AISEAQMYFDS 505



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/459 (19%), Positives = 187/459 (40%), Gaps = 62/459 (13%)

Query: 31  SYNRLIRQGRISECI-DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89
           +YN L+   R ++ + D+  +++  G+   +         +C+ Q  +++A  F +    
Sbjct: 205 TYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCR-QSRLQDAVTFLRETGG 263

Query: 90  ----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P++ +FN LMS        + A     ++ + GL  D   Y  L+     +G ++ 
Sbjct: 264 EEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEE 323

Query: 146 MFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
             E         V+PD V +N L       G +  A+ V+  M   ++ ++PD +T   L
Sbjct: 324 ALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRM--LLNGLNPDLVTYTIL 381

Query: 198 MKACANAGQVD--------------------------------RAREVYKMIHKYNIKG- 224
           +      G ++                                R  E   ++H+  + G 
Sbjct: 382 ICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGL 441

Query: 225 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
            P++  Y++ I+   + G  E A  +Y++M  K + P+    SA+I      G +  A  
Sbjct: 442 KPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQM 501

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
                    ++  II Y+ ++   +   N  +A+  Y+ +    + PT+ T N+LI   C
Sbjct: 502 YFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFC 561

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
              +L + +++L  +K  GL P ++TY+ L+     + D+     +L + +   + P  +
Sbjct: 562 KKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQI 621

Query: 403 MFKCII-GMCSR----------RYEKARTLNEHVLSFNS 430
            +  ++ G+C            +Y  AR L    +++N+
Sbjct: 622 TYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNT 660



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 158/395 (40%), Gaps = 57/395 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L + GRI E + LL +ME  GL      Y      +CK + A++EA   ++ + +  +  
Sbjct: 420 LCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCK-RGAVEEAIELYEEMCSKRIYP 478

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDAMFENV 150
            + + S   S    +GA    ++  ++  K+D      LY  +I   AK G +     + 
Sbjct: 479 NSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSY 538

Query: 151 K--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           K        P  V FN+LI    + G +  A  +L  +  +VH + P  +T   LM    
Sbjct: 539 KQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTI--KVHGLVPTSVTYTTLMNGYC 596

Query: 203 NAGQVDRAREVYKMIHKYN---IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
             G +     ++ M+H+     IK T   YT+ +    + G    +  +   M  +G+ P
Sbjct: 597 EEGDM---HSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFP 653

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D+                                   I+Y++++ +   A + QKA +L+
Sbjct: 654 DQ-----------------------------------ITYNTVIQSFCKAHDLQKAFQLH 678

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M    L+P+  T N LI  LC    L     +L  ++   +    + Y+ ++ A   K
Sbjct: 679 NQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAK 738

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR 413
            DV+  L+   Q  E G   ++  +  +I  +C R
Sbjct: 739 GDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKR 773


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 173/358 (48%), Gaps = 20/358 (5%)

Query: 81  FRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            R   L P+P       ++ +LM    + + ++ A  +LR ++ AG++AD   Y TLI  
Sbjct: 100 LRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRG 159

Query: 137 CAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
              + +VD   E         ++P+ VV+++L+    +SG  +    V  EM+ +   ++
Sbjct: 160 LCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEK--GIE 217

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD +    L+ +    G+  +A  V  M+ +  ++     Y + INC  + G  + A  V
Sbjct: 218 PDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGV 277

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE---AKNQGISVGIISYSSLMGA 305
              M++KGV PD V  + LI       +++ A  +L+E    KN  +   +++++S++  
Sbjct: 278 LKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNI-VKPNVVTFNSVIQG 336

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
             +    ++A ++   M+       + T N LI  L    ++ K ME++ +M SLGL P+
Sbjct: 337 LCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPD 396

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF-KCIIGMCSR-RYEKARTL 421
           + TYSIL+    +   V+    LLS  ++ G+ P L  +   ++ MC +   E+AR L
Sbjct: 397 SFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNL 454



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 114/497 (22%), Positives = 205/497 (41%), Gaps = 38/497 (7%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LIR       + + ++L+ +M   G+     VY +     CKS +       F ++
Sbjct: 152 TYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEM 211

Query: 87  V-----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
                 P+  + T  ++ S+C   K ++ A  V+ ++   GL+ +   Y  LI    K G
Sbjct: 212 SEKGIEPDVVMYT-GLIDSLCKVGK-AKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEG 269

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            V            + V PD V +N LI        +D A  +L EM    + V P+ +T
Sbjct: 270 SVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVT 329

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             ++++   + G++ +A +V  M+ +         Y + I    +      A  + D+MT
Sbjct: 330 FNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMT 389

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
             G+ PD    S LI       +V+ A ++L   +++GI   +  Y  L+ A       +
Sbjct: 390 SLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMME 449

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A  L+  M +      V   + +I   C    L    E+L  +   GL P+ +TYSI++
Sbjct: 450 RARNLFNEMDN-NFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVI 508

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE-------------KART 420
               +  D+E    +L Q    G +P++ +F  +I   S + E             K   
Sbjct: 509 NMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIA 568

Query: 421 LNEHVLSFNSGRPQIENKWTSL--ALMVYREAIVAGTIPTVEVVSKVLG---CLQLPYNA 475
           L+  ++S  S      N+  +L  +L  +   I  G I + + + KVL      + P N 
Sbjct: 569 LDSKIISTLSTSLVASNEGKALLQSLPDFSAEISKGNINSPQELMKVLHNAISFKAPSNQ 628

Query: 476 DIRERLVENLGVSADAL 492
            + +R   NLG  A +L
Sbjct: 629 QLHKRAKLNLGTFAGSL 645


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 169/378 (44%), Gaps = 16/378 (4%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           V  +RFF+     K       F K +        + T N++++       +  A+ VL  
Sbjct: 89  VDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGK 148

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKV-------DAMFEN-VKPDRVVFNALITACGQSGA 169
           V + G + D   + TLI      GKV       D M EN  +PD V +N+++    +SG 
Sbjct: 149 VMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGD 208

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
              A D+L +M  E   V  D  T   ++ +    G +D A  ++K +    IK +   Y
Sbjct: 209 TSLALDLLRKM--EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTY 266

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
              +    + G W     +  DM  + ++P+ +  + L+D     GK++ A E+ +E   
Sbjct: 267 NSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMIT 326

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           +GIS  II+Y++LM          +A  + + M   K  P + T  +LI   C   ++  
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDD 386

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
            M+V  ++   GL  N +TYSIL+    +   +++   L  +    GV+P+++ +  ++ 
Sbjct: 387 GMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD 446

Query: 409 GMCSR-RYEKARTLNEHV 425
           G+C   + EKA  + E +
Sbjct: 447 GLCDNGKLEKALEIFEDL 464



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 169/395 (42%), Gaps = 34/395 (8%)

Query: 20  NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           N   DV       + L R G I   I L ++ME KG+      Y++    +CK+ K    
Sbjct: 223 NVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDG 282

Query: 80  AFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           A     +V     P + TFN+L+ V                V+E  L+   +LY  +IT 
Sbjct: 283 ALLLKDMVSREIVPNVITFNVLLDV---------------FVKEGKLQEANELYKEMIT- 326

Query: 137 CAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                        + P+ + +N L+        +  A ++L  M    +   PD +T  +
Sbjct: 327 -----------RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVR--NKCSPDIVTFTS 373

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+K      +VD   +V++ I K  +      Y+I +    Q+G  + A  ++ +M   G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKA 315
           V+PD +    L+D     GK+E A EI ++ +   + +GI+ Y++++ G C   K  + A
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK-VEDA 492

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             L+  +    +KP V T   +I+ LC    L +   +L  M+  G  PN  TY+ L+ A
Sbjct: 493 WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
             R  D+     L+ + K  G   +    K +I M
Sbjct: 553 HLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDM 587



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 187/426 (43%), Gaps = 83/426 (19%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI+    +G++SE + L++ M   G               C+              
Sbjct: 160 TFNTLIKGLFLEGKVSEAVVLVDRMVENG---------------CQ-------------- 190

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              P + T+N +++    S D+  A  +LR ++E  +KAD   Y+T+I +  + G +DA 
Sbjct: 191 ---PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247

Query: 147 F--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                    + +K   V +N+L+    ++G  +    +L +M +    + P+ IT   L+
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS--REIVPNVITFNVLL 305

Query: 199 KACANAGQVDRAREVYK-MIHK--------YNI------------------------KGT 225
                 G++  A E+YK MI +        YN                         K +
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 226 PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
           P++  +T  I         +    V+ +++K+G++ + V  S L+     +GK++ A E+
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 284 LQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
            QE  + G+   +++Y  L+ G C N K  +KALE++E ++  K+   +     +I  +C
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGK-LEKALEIFEDLQKSKMDLGIVMYTTIIEGMC 484

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
            G ++     +   +   G+ PN +TY++++    +K  +    +LL + +EDG  PN  
Sbjct: 485 KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDC 544

Query: 403 MFKCII 408
            +  +I
Sbjct: 545 TYNTLI 550



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 61/137 (44%), Gaps = 1/137 (0%)

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           K + A  + QE         ++ +S    A +  K +   L+  + ++   +   + T+N
Sbjct: 68  KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLN 127

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            +I   C   +      VL  +  LG  P+T T++ L+     +  V   ++L+ +  E+
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 187

Query: 396 GVIPNLVMFKCII-GMC 411
           G  P++V +  I+ G+C
Sbjct: 188 GCQPDVVTYNSIVNGIC 204


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 200/422 (47%), Gaps = 22/422 (5%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           +V    +++N LI    ++GRI E   +L  M ++G       Y+A     C S++ + E
Sbjct: 260 NVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYC-SRENVHE 318

Query: 80  AFRFF-KLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A   F ++V     P +  +N+L+     +K  + A  + + +    L      Y +LI 
Sbjct: 319 ARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLID 378

Query: 136 TCAKSGKV-------DAMFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
               SG++       D M  + +P D V +N LI A  + G +  A  VL  M  +   V
Sbjct: 379 GLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKK--GV 436

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P+ +T  A+M        V+ A++++  + K  ++     Y + IN   +T   + A  
Sbjct: 437 KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIV 496

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           ++ +M  K +IPD    ++LID   + G++    E+L E  + G S  +I+Y+ L+ A  
Sbjct: 497 LFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFC 556

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
             + + KA+ L+  +    + P   T +A++  LC G++L    + L  +   G  PN  
Sbjct: 557 KTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQ 615

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNEHV 425
           TY+IL+ A  +       ++LLS+ +++   P+ + F+ IIG+  +R E  KA  L E +
Sbjct: 616 TYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEM 675

Query: 426 LS 427
           ++
Sbjct: 676 IA 677



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 116/527 (22%), Positives = 232/527 (44%), Gaps = 50/527 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGL---LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT 91
           ++R G     I L   ++ KG+   +    +    +F+   +  A        K    P 
Sbjct: 65  IVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPN 124

Query: 92  LSTFNMLMS-VCASSKDSEGAFQVLRLVQE---AGLKADCKLYTTLITTCAKSGKVDAMF 147
           L TFN +++  C +       F+ L   Q     G   D   Y TLI   +K+G++ A  
Sbjct: 125 LVTFNTIINGFCINGM----IFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAAL 180

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                    +V+P+ V+++ALI    + G V  A  + +++      +  D +T  +L+ 
Sbjct: 181 HLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGER--GILLDAVTYNSLID 238

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            C + G+     ++   + + N+      + I I+   + G    A  V   M+K+G  P
Sbjct: 239 GCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKP 298

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  +AL++       V  A E+      +G+   +++Y+ L+      K   +A+ L+
Sbjct: 299 DIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLF 358

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + + +  L PT+++ N+LI  LC+  ++    ++L +M      P+ +TY+IL+ A  ++
Sbjct: 359 KELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKE 418

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-----------RYEKARTLNEHVLS 427
             +   L +L    + GV PN+V +  ++ G C R           R  K+  L   +L+
Sbjct: 419 GRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS-GLEPDILN 477

Query: 428 FN---SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRER 480
           +N   +G  + E      A+++++E      IP +   + ++  L    ++P+  ++ + 
Sbjct: 478 YNVLINGYCKTE--MVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDE 535

Query: 481 LVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVP 525
           + ++ G S D +  +    L+D F +  P  +A SL  +    GI P
Sbjct: 536 MCDS-GQSPDVITYN---ILLDAFCKTQPFDKAISLFRQIVE-GIWP 577



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 169/389 (43%), Gaps = 43/389 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L + G+I   + LL++ME+  +     +Y A    +CK    + +A            
Sbjct: 168 NGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKD-GFVSDA------------ 214

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--------VD 144
                 + +C+              + E G+  D   Y +LI  C   G+          
Sbjct: 215 ------LGLCSQ-------------IGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTK 255

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
            + ENV PD   FN LI A  + G +  A  VLA M+       PD +T  ALM+   + 
Sbjct: 256 MVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGE--KPDIVTYNALMEGYCSR 313

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
             V  ARE++  + K  ++     Y + I+   +T   + A  ++ ++  K ++P     
Sbjct: 314 ENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASY 373

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++LID   ++G++    ++L E         +++Y+ L+ A        +AL +   M  
Sbjct: 374 NSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMK 433

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             +KP + T NA++   C  + +    ++ + M   GL P+ + Y++L+    + + V+ 
Sbjct: 434 KGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDE 493

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
            ++L  + +   +IP++  +  +I G+C+
Sbjct: 494 AIVLFKEMRHKNLIPDIASYNSLIDGLCN 522



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 113/278 (40%), Gaps = 8/278 (2%)

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           VD A      M   V P  P  +    L+ A    G    A  ++  +    I  +   +
Sbjct: 36  VDDAVTCFNRM-VRVFPPPPTSV-FDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATF 93

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           TI INC        FA S+   + K G  P+ V  + +I+     G +  A +  Q    
Sbjct: 94  TILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLA 153

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           QG      +Y +L+   S     + AL L + M+   ++P +   +ALI  LC    +  
Sbjct: 154 QGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSD 213

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
            + + S +   G+  + +TY+ L+  C      +    LL++   + V P+   F  +I 
Sbjct: 214 ALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILID 273

Query: 409 GMCSRRYEKARTLN-EHVLSFNSGRPQIENKWTSLALM 445
            +C    ++ R L  + VL+  S R +  +  T  ALM
Sbjct: 274 ALC----KEGRILEAQGVLAMMSKRGEKPDIVTYNALM 307


>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 932

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 190/414 (45%), Gaps = 22/414 (5%)

Query: 20  NYAHDVSEQLHSYNRLIRQGRI-SEC----ID----LLEDMERKGLLDMDKVYHAR---F 67
           ++  +  E+L S N +I  G I + C    +D    L+ +ME +G+     +YH     +
Sbjct: 375 HWFEEAKEKLPSLNAVIYGGIIYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGY 434

Query: 68  FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
             +   +K +    R  +    P++ ++  L+++         A ++ ++++ +G+K + 
Sbjct: 435 TMIGNEEKCLIVFDRLKECGFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNM 494

Query: 128 KLYTTLITTCAK---SGKVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAE 179
           K Y+ LI    K        ++FE+     +KPD V++N +ITA    G +DRA  ++ +
Sbjct: 495 KTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQ 554

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
           M  E H   P   T   ++   A AG++ RA E++ M+ +     T   Y   I    + 
Sbjct: 555 MQKERH--RPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEK 612

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
                A ++ D+M   GV P+E   + L+      G  E AF+     +N+G+ + + +Y
Sbjct: 613 RQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTY 672

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
            +L+ +C  +   Q AL + + M +  +       N LI        + +  +++  M+ 
Sbjct: 673 EALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQMRK 732

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            GL P+  TY+  + AC +  D++    ++ + +  G+ PNL  +  +I   +R
Sbjct: 733 EGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEASGIKPNLKTYTTLINGWAR 786



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 162/365 (44%), Gaps = 41/365 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P+   ++ L+   A  +D E A   +R ++E G++     Y+ ++   AK G  DA    
Sbjct: 317 PSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHW 376

Query: 147 FENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAE--VHPVD----------- 188
           FE  K      + V++  +I A  Q   +DRA  ++ EM  +    P+D           
Sbjct: 377 FEEAKEKLPSLNAVIYGGIIYAHCQICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTM 436

Query: 189 --------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                               P  I+ G L+      G+V +A E+ KM+    IK   + 
Sbjct: 437 IGNEEKCLIVFDRLKECGFFPSVISYGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKT 496

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y++ IN   +  DW  A SV++D TK G+ PD V  + +I      G ++ A  ++++ +
Sbjct: 497 YSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMGNMDRAICMVRQMQ 556

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +       ++  ++   + A   ++ALE+++ M+     PTV T NALI  L +  Q+ 
Sbjct: 557 KERHRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMT 616

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           K + +L +M   G+ PN  TY+ L+       D E      +  + +G+  ++  ++ ++
Sbjct: 617 KAVAILDEMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALL 676

Query: 409 GMCSR 413
             C +
Sbjct: 677 KSCCK 681



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 157/355 (44%), Gaps = 15/355 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   + G++S+ +++ + M+  G+    K Y +   N     K    AF  F+       
Sbjct: 467 NLYTKVGKVSKALEISKMMKMSGIKHNMKTY-SMLINGFLKLKDWANAFSVFEDFTKDGL 525

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  +N +++      + + A  ++R +Q+   +   + +  +I   A++G++    E
Sbjct: 526 KPDVVLYNNIITAFCGMGNMDRAICMVRQMQKERHRPTTRTFLPIIHGFARAGEMRRALE 585

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      P    +NALI    +   + +A  +L EMN  V  V P+  T   LM+ 
Sbjct: 586 IFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMN--VAGVGPNEHTYTTLMQG 643

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A+ G  ++A + + ++    ++     Y   +  C ++G  + A +V  +M+ K +  +
Sbjct: 644 YASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRN 703

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID     G V  A +++Q+ + +G+   I +Y+S + AC  A + QKA E+ +
Sbjct: 704 TFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQ 763

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            M++  +KP + T   LI          K +    +MK  G  P+   Y  L+ +
Sbjct: 764 EMEASGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAGFKPDKAVYHCLVTS 818



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 135/296 (45%), Gaps = 26/296 (8%)

Query: 55  GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114
           G+ +MD+        +C  ++  KE  R       PT  TF  ++   A + +   A ++
Sbjct: 541 GMGNMDRA-------ICMVRQMQKERHR-------PTTRTFLPIIHGFARAGEMRRALEI 586

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAM-FENVKPDRVVFNALITACGQ 166
             +++ +G       Y  LI    +  +       +D M    V P+   +  L+     
Sbjct: 587 FDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVAILDEMNVAGVGPNEHTYTTLMQGYAS 646

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
            G  ++AF     +  E   ++ D  T  AL+K+C  +G++  A  V K +   NI    
Sbjct: 647 LGDTEKAFQYFTVLRNE--GLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNT 704

Query: 227 EVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
            VY I I+  ++ GD WE A  +   M K+G++PD    ++ I+    AG ++ A EI+Q
Sbjct: 705 FVYNILIDGWARRGDVWE-AADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQ 763

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           E +  GI   + +Y++L+   + A   +KAL  +E MK    KP  +  + L+T+L
Sbjct: 764 EMEASGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAGFKPDKAVYHCLVTSL 819



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/255 (21%), Positives = 98/255 (38%), Gaps = 35/255 (13%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P     G ++K     G +  AR+ ++ +    I+ +  VY+  I+  +   D E A   
Sbjct: 282 PARKEYGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALHC 341

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK-------------------- 288
              M ++G+    V  S ++      G  +AA    +EAK                    
Sbjct: 342 VRKMKEEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQ 401

Query: 289 ---------------NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
                           QGI   I  Y ++M   +   N +K L +++ +K     P+V +
Sbjct: 402 ICNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVIS 461

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
              LI       ++ K +E+   MK  G+  N  TYS+L+    +  D      +     
Sbjct: 462 YGCLINLYTKVGKVSKALEISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFT 521

Query: 394 EDGVIPNLVMFKCII 408
           +DG+ P++V++  II
Sbjct: 522 KDGLKPDVVLYNNII 536



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/185 (20%), Positives = 79/185 (42%)

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y + +    + GD   A   ++ M  +G+ P     S+LI        +E A   +++ K
Sbjct: 287 YGLMVKYYGRRGDMHHARQTFESMRARGIEPSSHVYSSLIHAYAVGRDMEEALHCVRKMK 346

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +GI + I++YS ++G  +   N   A   +E  K             +I A C    + 
Sbjct: 347 EEGIEMTIVTYSIIVGGFAKMGNADAADHWFEEAKEKLPSLNAVIYGGIIYAHCQICNMD 406

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +   ++ +M+  G+      Y  ++       + E  L++  + KE G  P+++ + C+I
Sbjct: 407 RAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFFPSVISYGCLI 466

Query: 409 GMCSR 413
            + ++
Sbjct: 467 NLYTK 471


>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
 gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
          Length = 759

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 174/414 (42%), Gaps = 49/414 (11%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           K  KA+ E F   K+V  P L  +N ++  C+   D   A ++ R + E G+        
Sbjct: 170 KLAKAV-EIFEAMKVVCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMS------- 221

Query: 132 TLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
                               PDR+ FN LI+A G++   +    + AEM  E   +  D 
Sbjct: 222 --------------------PDRITFNTLISAAGRANRWEECDRIFAEM--EERGIARDD 259

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYD 250
           +T   L+      GQ+     + + + K + I+ +   Y+  I+  ++ G    A +++ 
Sbjct: 260 VTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQ 319

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M  + V PD +  + ++D     G  + A  I +  +  G +  I++Y++L+ +     
Sbjct: 320 EMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQG 379

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            +++A+ L E MK     P + T +ALI A C        M +  D+K  GL P+ + YS
Sbjct: 380 KFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYS 439

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS 430
            L+  C +    +  L LL +  ++G+ PN++ +  ++    R+    R     +  F  
Sbjct: 440 TLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRKTFPKLRFFLL 499

Query: 431 GR------PQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVL 466
            R      P +++   SL            A  V+RE    G  P V   S +L
Sbjct: 500 PRVTMLLKPSMQDDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTFSSIL 553



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/416 (24%), Positives = 171/416 (41%), Gaps = 65/416 (15%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI    R  R  EC  +  +ME +G+   D  Y                       
Sbjct: 226 TFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTY----------------------- 262

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KV 143
             N  ++T+      C   +   GA  +  + + +G++     Y+T+I   AK G   + 
Sbjct: 263 --NTLIATY------CRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEA 314

Query: 144 DAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            A+F     +NV+PD + +N ++    + G  D A  +   M  E      D +T  AL+
Sbjct: 315 IALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAM--EEAGFAKDIVTYNALL 372

Query: 199 KACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKK 255
            +    G+    RE   ++ +   +G +P +  Y+  I+   + G    A +++ D+ K 
Sbjct: 373 DSYGKQGKF---REAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKA 429

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-----K 310
           G+ PD V  S L+D     G  + A  +L+E  + GI   +I+Y+SL+ A         K
Sbjct: 430 GLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRK 489

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ----LPKTMEVLSDMKSLGLCPNT 366
            + K         ++ LKP   +M     +L D  Q    +     V  +M   G+ PN 
Sbjct: 490 TFPKLRFFLLPRVTMLLKP---SMQDDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNV 546

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTL 421
           +T+S +L AC     VE    LL   +  DG +   V    ++G   R +  A TL
Sbjct: 547 VTFSSILNACSHCASVEDASNLLEAMRVFDGRVYG-VTHGLLMGFRIRVWRDAETL 601



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 159/348 (45%), Gaps = 31/348 (8%)

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPE-VYTIAINCCSQTGDW 242
           H + PD +    +++   ++GQ ++  + +  M+ + N++   + V +  I+   + G  
Sbjct: 79  HLLGPDDLPF--IVRELGHSGQWEKVVKSFDWMVLQQNLRSQWDKVTSTIISSLGRLGRS 136

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           ++A  ++D     G   +    S+LI   G +GK+  A EI  EA        ++ Y+++
Sbjct: 137 DWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIF-EAMKVVCKPNLVVYNAV 195

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           + ACS   ++  AL ++  M    + P   T N LI+A    ++  +   + ++M+  G+
Sbjct: 196 IDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGI 255

Query: 363 CPNTITYSILLVACERKDDVEVGLMLL-SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
             + +TY+ L+    R   + +G  L+ + AK  G+ P+++ +  +I      Y K    
Sbjct: 256 ARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMID----GYAKLGLA 311

Query: 422 NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERL 481
           +E +  F   R Q           V  + I   T+  V++ ++ LG     ++  IR R 
Sbjct: 312 HEAIALFQEMRNQ----------NVEPDGICYNTM--VDIHAR-LGNFDEAHS--IR-RA 355

Query: 482 VENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVPCV 527
           +E  G + D +  +   +L+D +G+      A SLLEE    G  P +
Sbjct: 356 MEEAGFAKDIVTYN---ALLDSYGKQGKFREAMSLLEEMKQRGASPNI 400


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 163/333 (48%), Gaps = 16/333 (4%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--- 143
           +P P  S    LMS   S+ +   A+     + +AG+  + +L+  L+    + G++   
Sbjct: 152 LPAPVCSG---LMSRLPSTPE---AYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSA 205

Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
               D M  +V+P  V FN LI+   ++  +D A D L +  ++V  V PD  T GAL+K
Sbjct: 206 RKVFDEMRRSVQPTVVTFNTLISGMCRARDLD-AVDGLYKEMSDVG-VKPDVYTYGALIK 263

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G+++ A +++  +    +     V+T  I+   + G+      +Y DM  +GV+P
Sbjct: 264 GFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMP 323

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  +AL++    A  ++AA  I++E KN G+    ++Y++L+  C        A+++ 
Sbjct: 324 DLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIK 383

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M   ++     T  ALI+ L    +      VL +M    L P+  TY++++ A  RK
Sbjct: 384 QKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRK 443

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            DV+ G  LL + +  G  P +V +  I+ G+C
Sbjct: 444 GDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLC 476



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 164/374 (43%), Gaps = 20/374 (5%)

Query: 56  LLDMDKVYHARFFNVCKSQ-------KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108
           LLD       R FNV            + ++ F   +    PT+ TFN L+S    ++D 
Sbjct: 177 LLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRRSVQPTVVTFNTLISGMCRARDL 236

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFE-----NVKPDRVVFNAL 160
           +    + + + + G+K D   Y  LI    ++G+++    MF       V P+ VVF  L
Sbjct: 237 DAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTL 296

Query: 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220
           I A  + G V+   D+  +M   V  V PD +   AL+     A  +  A  + + +   
Sbjct: 297 IDAHCKEGNVNAGMDLYQDM--RVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNA 354

Query: 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
            +K     YT  I+ C + G  + A  +   M +K V  DEV  +ALI     AG+   A
Sbjct: 355 GLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDA 414

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
             +L+E     +     +Y+ ++ A     + +   +L + M++   KP V T N ++  
Sbjct: 415 ERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNG 474

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           LC   Q+     +L  M ++G+ P+ ITY+ILL    +   V     L S     G++P+
Sbjct: 475 LCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEELESSK---GMVPD 531

Query: 401 LVMFKCIIGMCSRR 414
             ++  +I   +++
Sbjct: 532 FAVYTSLISELAKK 545



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 120/288 (41%), Gaps = 48/288 (16%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN 96
           ++G ++  +DL +DM  +G++                                P L  +N
Sbjct: 302 KEGNVNAGMDLYQDMRVRGVM--------------------------------PDLVAYN 329

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------- 148
            L++    +++ + A  ++  ++ AGLK D   YTTLI  C K GK+D   +        
Sbjct: 330 ALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEK 389

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            V  D V + ALI+   ++G    A  VL EM      ++PD+ T   ++ A    G V 
Sbjct: 390 EVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAA--LEPDNTTYTMVIDAFCRKGDVK 447

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
              ++ K +     K     Y + +N   + G  + A  +   M   GV PD++  + L+
Sbjct: 448 TGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILL 507

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN---AKNWQ 313
           D     GKV  + E+     ++G+      Y+SL+   +    AKN+ 
Sbjct: 508 DGQCKHGKVANSEEL---ESSKGMVPDFAVYTSLISELAKKKPAKNYH 552



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 24/189 (12%)

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ++++ M+   ++PTV T N LI+ +C    L     +  +M  +G+ P+  TY  L+ 
Sbjct: 205 ARKVFDEMRR-SVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIK 263

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 434
              R   +E  + + ++ ++ GV PN V+F  +I             + H    N     
Sbjct: 264 GFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLI-------------DAHCKEGN----- 305

Query: 435 IENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKR 494
                 +  + +Y++  V G +P +   + ++  L    N    E +VE +  +     +
Sbjct: 306 -----VNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDK 360

Query: 495 SNLCSLIDG 503
               +LIDG
Sbjct: 361 VTYTTLIDG 369


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/497 (21%), Positives = 201/497 (40%), Gaps = 75/497 (15%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAFRFFKLVP 88
            +++G+ +E  D+L++M   G+     +Y      +CK      + K +KE     K+  
Sbjct: 358 FMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKE---MIKVGL 414

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P   T+N LM       D +GAF++L  ++ +G+  +   Y  +I    ++G+      
Sbjct: 415 RPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGN 474

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMN-AEVHP------------- 186
              + + E +KP+  ++  LI    + G +  A + L +M  A VHP             
Sbjct: 475 LLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLS 534

Query: 187 -------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                              + PD  T   L+      G +++A ++ + +    +K   +
Sbjct: 535 TVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNAD 594

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            YT  +    ++ D+E   S+   M   G  PD      +I     +  +E AF +L E 
Sbjct: 595 TYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEV 654

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           +  G+   +  YSSL+       + +KA+ L + M    L+P +   NALI   C    +
Sbjct: 655 EKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDI 714

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            +   V   + + GL PN +TY+ L+    +  D+     L  +  + G+ P+  ++  +
Sbjct: 715 SRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVL 774

Query: 408 IGMCSR--RYEKARTLNEHVLSFNSG----------------RPQIENKWTSLALMVYRE 449
              CS     E+A  L E +  FN G                R +++     L +M+ RE
Sbjct: 775 ATGCSDAADLEQALFLTEEM--FNRGYANVSLFNTLVHGFCKRGKLQETEKLLHVMMDRE 832

Query: 450 AIVAGTIPTVEVVSKVL 466
                 +P  + V KV+
Sbjct: 833 -----IVPNAQTVEKVV 844



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 173/398 (43%), Gaps = 20/398 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    R G + E     E+M   GL      Y A    +CK  + +KEA      
Sbjct: 280 TYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSR-LKEAKALLDE 338

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P +  +  L+        +  AF +L+ +  AG++ +  +Y  LI    K G+
Sbjct: 339 MSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQ 398

Query: 143 V--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +        + +   ++PD   +N L+    Q    D AF++L EM      + P+  + 
Sbjct: 399 LGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNS--GILPNVYSY 456

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           G ++      G+   A  + + +    +K    +Y   I   S+ G+   AC   + MTK
Sbjct: 457 GIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTK 516

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
             V PD    ++LI      G++E A E   + + +G+     +YS L+       N +K
Sbjct: 517 ANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEK 576

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A +L   M +  LKP   T   L+      +   K   +L  M   G  P+   Y I++ 
Sbjct: 577 ADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIR 636

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
              R +++EV  M+L++ +++G++P+L ++  +I G+C
Sbjct: 637 NLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLC 674



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 125/502 (24%), Positives = 219/502 (43%), Gaps = 49/502 (9%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMS-V 101
           + E+M R+     +  Y+     +C+S  A++EAF F + + +  LS    T+  LM+ +
Sbjct: 265 VFEEMRRRDCAMNEVTYNVMISGLCRS-GAVEEAFGFKEEMVDYGLSPDAFTYGALMNGL 323

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPD 153
           C  S+  E A  +L  +  +GLK +  +Y TL+    K GK    F+         V+P+
Sbjct: 324 CKGSRLKE-AKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPN 382

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           +++++ LI    + G + RA  +L EM      + PD  T   LM+        D A E+
Sbjct: 383 KIMYDNLIRGLCKIGQLGRASKLLKEMIKV--GLRPDTFTYNPLMQGHFQQHDKDGAFEL 440

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
              +    I      Y I IN   Q G+ + A ++ ++M  +G+ P+    + LI     
Sbjct: 441 LNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSK 500

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
            G +  A E L++     +   +  Y+SL+   S     ++A E Y  ++   L P   T
Sbjct: 501 EGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFT 560

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            + LI   C    L K  ++L  M + GL PN  TY+ LL    + +D E    +L    
Sbjct: 561 YSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSML 620

Query: 394 EDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVA 453
             G  P+  ++  +I   SR                      EN    +A MV  E    
Sbjct: 621 GSGDKPDNHIYGIVIRNLSRS---------------------EN--MEVAFMVLTEVEKN 657

Query: 454 GTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLC--SLIDGF---GEYD 508
           G +P + + S ++  L    + +    L++ +  + + L+   +C  +LIDGF   G+  
Sbjct: 658 GLVPDLHIYSSLISGLCKIADMEKAVGLLDEM--AKEGLEPGIVCYNALIDGFCRSGDIS 715

Query: 509 PRAFSLLEEAASFGIVP-CVSF 529
            RA ++ +   + G+VP CV++
Sbjct: 716 -RARNVFDSILAKGLVPNCVTY 736



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 143/327 (43%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           PT    N L+     +   E  +++   ++ AG+  D   Y+T I    K+   DA   +
Sbjct: 206 PTRRCCNGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKV 265

Query: 147 FENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE ++      + V +N +I+   +SGAV+ AF    EM    + + PD  T GALM   
Sbjct: 266 FEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVD--YGLSPDAFTYGALMNGL 323

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               ++  A+ +   +    +K    VY   ++   + G    A  +  +M   GV P++
Sbjct: 324 CKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNK 383

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +    LI      G++  A ++L+E    G+     +Y+ LM       +   A EL   
Sbjct: 384 IMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNE 443

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M++  + P V +   +I  LC   +  +   +L +M S GL PN   Y+ L++   ++ +
Sbjct: 444 MRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGN 503

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + +    L +  +  V P+L  +  +I
Sbjct: 504 ISLACEALEKMTKANVHPDLFCYNSLI 530



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 114/241 (47%), Gaps = 2/241 (0%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD  T    ++A   A   D A++V++ + + +       Y + I+   ++G  E A   
Sbjct: 241 PDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGF 300

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            ++M   G+ PD     AL++      +++ A  +L E    G+   I+ Y +L+     
Sbjct: 301 KEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMK 360

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                +A ++ + M S  ++P     + LI  LC   QL +  ++L +M  +GL P+T T
Sbjct: 361 EGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFT 420

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEK-ARTLNEHVL 426
           Y+ L+    ++ D +    LL++ +  G++PN+  +  +I G+C     K A  L E ++
Sbjct: 421 YNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMI 480

Query: 427 S 427
           S
Sbjct: 481 S 481



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 77/365 (21%), Positives = 139/365 (38%), Gaps = 88/365 (24%)

Query: 24  DVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           +V   L  YN LI+     GR+ E  +    ++++GL+  +  Y       CK+   +++
Sbjct: 518 NVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGN-LEK 576

Query: 80  AFRFFK------LVPN---------------------------------PTLSTFNMLMS 100
           A +  +      L PN                                 P    + +++ 
Sbjct: 577 ADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIR 636

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGKVDAMF-ENVKP 152
             + S++ E AF VL  V++ GL  D  +Y++LI+   K        G +D M  E ++P
Sbjct: 637 NLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEP 696

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
             V +NALI    +SG + RA +V   + A+   + P+ +T  AL+      G +  A +
Sbjct: 697 GIVCYNALIDGFCRSGDISRARNVFDSILAK--GLVPNCVTYTALIDGNCKNGDITDAFD 754

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---------------- 256
           +YK +    I     VY +    CS   D E A  + ++M  +G                
Sbjct: 755 LYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYANVSLFNTLVHGFCK 814

Query: 257 ------------------VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
                             ++P+   +  ++   G AGK+  A  +  E + +  S     
Sbjct: 815 RGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQKKASQSATD 874

Query: 299 YSSLM 303
             SL+
Sbjct: 875 RFSLL 879



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 61/305 (20%), Positives = 123/305 (40%), Gaps = 31/305 (10%)

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           V  + ++   +TG    A  V   M   G+ P     + L+     A  +E  +++    
Sbjct: 175 VLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLRADAMELLWKLKGFM 234

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           +  GI   + +YS+ + A   A+++  A +++E M+         T N +I+ LC    +
Sbjct: 235 EGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAV 294

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            +      +M   GL P+  TY  L+    +   ++    LL +    G+ PN+V++  +
Sbjct: 295 EEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTL 354

Query: 408 IGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLG 467
           +    +  + A   +                       + +E I AG  P   +   ++ 
Sbjct: 355 VDGFMKEGKTAEAFD-----------------------ILKEMISAGVQPNKIMYDNLIR 391

Query: 468 CL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR-AFSLLEEAASFG 522
            L    QL   + + + +++ +G+  D    + L  +   F ++D   AF LL E  + G
Sbjct: 392 GLCKIGQLGRASKLLKEMIK-VGLRPDTFTYNPL--MQGHFQQHDKDGAFELLNEMRNSG 448

Query: 523 IVPCV 527
           I+P V
Sbjct: 449 ILPNV 453


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 161/336 (47%), Gaps = 17/336 (5%)

Query: 73  SQKAIKEAF--RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
           SQ  +  +F  +  KL   P + TF  L++  C  ++  E    V ++V E G+K D  +
Sbjct: 120 SQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMV-EMGIKPDVVI 178

Query: 130 YTTLITTCAKSGKVD---AMF---EN--VKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           YTT+I +  K+G VD   ++F   EN  ++PD V++ +L+     SG    A  +L  M 
Sbjct: 179 YTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMM 238

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
                + PD IT  AL+ A    G++  A+E+Y  + + +I      YT  IN     G 
Sbjct: 239 KR--KIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGR 296

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            + A  ++  M  KG  PD V  ++LI+      KVE A +I  E   +G++   I+Y++
Sbjct: 297 LDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTT 356

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL- 360
           L+           A E++ HM S  + P + T N L+  LC   ++ K + +  DM+   
Sbjct: 357 LIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKRE 416

Query: 361 --GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
             G+ PN  TY++LL        +E  LM+    ++
Sbjct: 417 IDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQK 452



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 140/331 (42%), Gaps = 14/331 (4%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT-TLITTC--------- 137
           P P++  F  L++V A  K  +    + + +Q  G+  D  LYT  L+  C         
Sbjct: 67  PLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSND--LYTCNLLMNCFCQSSQPCL 124

Query: 138 AKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
           A S     M    +PD   F +LI        ++ A  ++ +M  E+  + PD +    +
Sbjct: 125 ASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQM-VEM-GIKPDVVIYTTI 182

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           + +    G VD A  ++  +  Y I+    +YT  +N    +G W  A  +   M K+ +
Sbjct: 183 IDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKI 242

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD +  +ALID     GK+  A E+  E     I+  I +Y+SL+          +A +
Sbjct: 243 KPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQ 302

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           ++  M++    P V    +LI   C   ++   M++  +M   GL  NTITY+ L+    
Sbjct: 303 MFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFG 362

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                 V   +       GV PN+  +  ++
Sbjct: 363 LVGKPNVAQEVFGHMVSRGVPPNIRTYNVLL 393



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 117/272 (43%), Gaps = 14/272 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            +++G++ +  +L  +M +  +      Y +    +C   + + EA + F L+      P
Sbjct: 256 FVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGR-LDEARQMFYLMETKGCFP 314

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            +  +  L++     K  E A ++   + + GL  +   YTTLI      GK +   E  
Sbjct: 315 DVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVF 374

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA-EVHPVDPDHITIGALMKAC 201
                  V P+   +N L+     +G V++A  +  +M   E+  V P+  T   L+   
Sbjct: 375 GHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGL 434

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G++++A  V+  + K ++      YTI I    + G  + A +++  +  KGV P+ 
Sbjct: 435 CYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNV 494

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           V  + +I      G +  A  + ++ K  G+S
Sbjct: 495 VTYTTMISGLFREGLMLEAHVLFRKMKEDGVS 526


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 183/394 (46%), Gaps = 19/394 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    +   +++ +D L +M  +G+      Y++    +C     + EA R FK 
Sbjct: 235 TYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLC-CLGQLNEATRLFKR 293

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+N+++      +    A   L  + + G+  D   YTT++      G+
Sbjct: 294 MEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQ 353

Query: 143 VDA---MFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           ++    +F+ +     KPD V +N +I +  +   V+ A + L+EM     P  P+ +T 
Sbjct: 354 LNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIP--PNAVTY 411

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             ++    N GQ+D A +++K +   N+      ++I ++   Q G    A  V++ MT+
Sbjct: 412 STILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTE 471

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           KGV P+    +AL++      K+  A ++ +    +G +  + SY+ L+    N++   K
Sbjct: 472 KGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDK 531

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A  L   M   KL P   T N ++  LC   +L    E+   M S G+ P  +TYSILL 
Sbjct: 532 AKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLN 591

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              +   ++  L L    KE  + P+++++  +I
Sbjct: 592 GLCKHGHLDEALKLFKSMKEKKLEPDIILYTILI 625



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 158/352 (44%), Gaps = 12/352 (3%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + FKL   P + TF  L++   +    + A ++   +  +G + D   Y TLI     SG
Sbjct: 153 KMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSG 212

Query: 142 KVDA-------MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
             +        M +N  KP+ V +N +I +  +   V+ A D L+EM     P  PD IT
Sbjct: 213 NTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIP--PDAIT 270

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +++      GQ++ A  ++K + +   K     Y I I+   +      A     +M 
Sbjct: 271 YNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMV 330

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            +G+ PD V  + ++    + G++  A  + ++ + +G    +++Y++++ +    +   
Sbjct: 331 DQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVN 390

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A+E    M    + P   T + ++   C+  QL +  ++  +M    + PNT+T+SIL+
Sbjct: 391 DAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILV 450

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNE 423
               ++  V     +     E GV PN+  +  ++ G C R +  +AR + E
Sbjct: 451 DGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFE 502



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 2/240 (0%)

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
           +VD A      M A ++P  P  +  G  + + A   Q      +   +  + +  T   
Sbjct: 73  SVDDALASFYRM-ARMNP-RPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYS 130

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
             I INC  +    +FA SV+  M K G+ PD +  + LI+   + GK++ A E+  E  
Sbjct: 131 LNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMV 190

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
             G    +ISY++L+    N+ N   A+ +++ M+    KP V T N +I +LC    + 
Sbjct: 191 RSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVN 250

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             M+ LS+M   G+ P+ ITY+ ++        +     L  + +++G  P++V +  II
Sbjct: 251 DAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIII 310



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/313 (22%), Positives = 136/313 (43%), Gaps = 21/313 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    +   +++ ++ L +M  +G+      Y       C   + + EA + FK 
Sbjct: 375 AYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQ-LDEATQLFKE 433

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TC--A 138
           +      P   TF++L+  +C     SE  + V   + E G++ +   Y  L+   C   
Sbjct: 434 MVGRNVMPNTLTFSILVDGLCQEGMVSEARW-VFETMTEKGVEPNIYTYNALMNGYCLRC 492

Query: 139 KSGKVDAMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K  +   +FE        PD   +N LI     S  +D+A  +L +M+  V  + P+ +T
Sbjct: 493 KMNEARKVFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMS--VKKLTPNTVT 550

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              +MK     G++  A+E++K +    +  T   Y+I +N   + G  + A  ++  M 
Sbjct: 551 YNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMK 610

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +K + PD +  + LI+     GK+E A  +  +    GI     +Y+ ++          
Sbjct: 611 EKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSD 670

Query: 314 KALELYEHMKSIK 326
           +A EL+   K +K
Sbjct: 671 EAYELFRKWKMMK 683


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 192/431 (44%), Gaps = 59/431 (13%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L ++GR+S   +L   ++  G   +D   +    +   +    +EA   FK +      P
Sbjct: 183 LGKEGRVSSAANLFNGLQEDGF-SLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKP 241

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEA---GLKADCKLYTTLITTCAKSG---KVD 144
           TL T+N++++V    K      ++  LV++    G+  D   Y TLIT C +     +  
Sbjct: 242 TLITYNVILNVFG--KMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAA 299

Query: 145 AMFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            +FE +K      D+V +NAL+   G+S     A  VL EM  E++   P  +T  +L+ 
Sbjct: 300 QVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEM--ELNGFSPSIVTYNSLIS 357

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A A  G +D A E+   + +   K     YT  ++   + G  E A +++++M   G  P
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKP 417

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG--------------- 304
           +    +A I   G+ GK     +I  E    G+S  I+++++L+                
Sbjct: 418 NICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVF 477

Query: 305 --------------------ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
                               A S   ++++A+ +Y  M    + P +ST N ++ AL  G
Sbjct: 478 KEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARG 537

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM-LLSQAKEDGVI-PNLV 402
               ++ +VL++M+     PN +TY  LL A    +  E+GLM  L++    GVI P  V
Sbjct: 538 GMWEQSEKVLAEMEDGRCKPNELTYCSLLHA--YANGKEIGLMHSLAEEVYSGVIEPRAV 595

Query: 403 MFKCIIGMCSR 413
           + K ++ +CS+
Sbjct: 596 LLKTLVLVCSK 606



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/415 (20%), Positives = 186/415 (44%), Gaps = 17/415 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTL 92
           R G++   +++ E+M   G       ++A F  +  ++    +  + F  +     +P +
Sbjct: 396 RAGKVESAMNIFEEMRNAGCKPNICTFNA-FIKMYGNRGKFVDMMKIFDEINVCGLSPDI 454

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---- 148
            T+N L++V   +        V + ++ AG   + + + TLI+  ++ G  +        
Sbjct: 455 VTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRR 514

Query: 149 ----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                V PD   +N ++ A  + G  +++  VLAEM  E     P+ +T  +L+ A AN 
Sbjct: 515 MLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEM--EDGRCKPNELTYCSLLHAYANG 572

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
            ++     + + ++   I+    +    +  CS+      A   + ++ ++G  PD   L
Sbjct: 573 KEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITTL 632

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++++   G    V  A E+L   K +G +  + +Y+SLM   S + ++ K+ E+   + +
Sbjct: 633 NSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILA 692

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             +KP + + N +I A C   ++     + S+M+  G+ P+ ITY+  + +       E 
Sbjct: 693 KGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEE 752

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIEN 437
            + ++    + G  PN   +  I+ G C   R ++A+   E + + +   P+ E+
Sbjct: 753 AIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNLDPHAPKGED 807



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 118/263 (44%), Gaps = 3/263 (1%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D  V   +I+  G+ G V  A ++   +  +   +D    T  +L+ A AN+G+   A  
Sbjct: 172 DNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYT--SLISAFANSGRYREAVN 229

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           V+K + +   K T   Y + +N   + G  W    S+ + M   G+ PD    + LI   
Sbjct: 230 VFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCC 289

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
                 + A ++ +E K  G S   ++Y++L+     +   ++A+++   M+     P++
Sbjct: 290 KRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSI 349

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T N+LI+A      L + ME+ + M   G  P+  TY+ LL   ER   VE  + +  +
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEE 409

Query: 392 AKEDGVIPNLVMFKCIIGMCSRR 414
            +  G  PN+  F   I M   R
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNR 432



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 153/389 (39%), Gaps = 42/389 (10%)

Query: 96  NMLMSVCASSKDSEG----AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF---- 147
           N ++++  S    EG    A  +   +QE G   D   YT+LI+  A SG+         
Sbjct: 173 NSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFK 232

Query: 148 ----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
               E  KP  + +N ++   G+ G        L E   +   + PD  T   L+  C  
Sbjct: 233 KMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVE-KMKSDGIAPDAYTYNTLITCCKR 291

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
                 A +V++ +           Y   ++   ++   + A  V ++M   G  P  V 
Sbjct: 292 GSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVT 351

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            ++LI      G ++ A E+  +   +G    + +Y++L+     A   + A+ ++E M+
Sbjct: 352 YNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMR 411

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDV 382
           +   KP + T NA I    +  +    M++  ++   GL P+ +T++ LL V  +   D 
Sbjct: 412 NAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDS 471

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT 440
           EV   +  + K  G +P    F  +I   SR   +E+A T                    
Sbjct: 472 EVS-GVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMT-------------------- 510

Query: 441 SLALMVYREAIVAGTIPTVEVVSKVLGCL 469
                VYR  + AG  P +   + VL  L
Sbjct: 511 -----VYRRMLDAGVTPDLSTYNTVLAAL 534



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 130/293 (44%), Gaps = 13/293 (4%)

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D+  I  ++      G+V  A  ++  + +         YT  I+  + +G +  A +V+
Sbjct: 172 DNSVIAIVISMLGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVF 231

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
             M ++G  P  +  + +++  G  G        ++++ K+ GI+    +Y++L+  C  
Sbjct: 232 KKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKR 291

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
               Q+A +++E MK+        T NAL+       +  + M+VL++M+  G  P+ +T
Sbjct: 292 GSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVT 351

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNE--- 423
           Y+ L+ A  R   ++  + L +Q  E G  P++  +  ++    R  + E A  + E   
Sbjct: 352 YNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMR 411

Query: 424 ------HVLSFNSGRPQIENKWTSLALM-VYREAIVAGTIPTVEVVSKVLGCL 469
                 ++ +FN+      N+   + +M ++ E  V G  P +   + +L   
Sbjct: 412 NAGCKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVF 464



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 47/234 (20%), Positives = 93/234 (39%), Gaps = 37/234 (15%)

Query: 13  YPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           Y NGK     H ++E+++S                       G+++   V       VC 
Sbjct: 569 YANGKEIGLMHSLAEEVYS-----------------------GVIEPRAVLLKTLVLVCS 605

Query: 73  SQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
               + EA R F  +     +P ++T N ++S+    +    A +VL  ++E G      
Sbjct: 606 KCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMA 665

Query: 129 LYTTLITTCAKS---GKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
            Y +L+   ++S   GK + +      + +KPD + +N +I A  ++  +  A  + +EM
Sbjct: 666 TYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEM 725

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
                 + PD IT    + + A     + A  V + + K+  +     Y   ++
Sbjct: 726 RDS--GIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVD 777


>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like, partial [Cucumis sativus]
          Length = 564

 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 171/378 (45%), Gaps = 13/378 (3%)

Query: 47  LLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           L+ +ME +G+     +YH     +  V    K +    RF +   NP++ T+  L+++ A
Sbjct: 40  LVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFERFKECGLNPSVITYGCLINLYA 99

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAMFEN-----VKPDRV 155
                  A +V + ++ AG+K + K Y+ LI    K        A+FE+     +KPD V
Sbjct: 100 KLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVV 159

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           ++N +ITA    G +DRA   + EM  + H   P   T   ++   A  G++ +A +V+ 
Sbjct: 160 LYNNIITAFCGMGKMDRAVCTVKEMQKQRHK--PTTRTFMPIIHGFARKGEMKKALDVFD 217

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
           M+       T   Y   I    +    E A  + D+MT  GV P+E   + ++      G
Sbjct: 218 MMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLG 277

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
               AF    + +++G+ + + +Y +L+ AC  +   Q AL + + M +  +       N
Sbjct: 278 DTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFIYN 337

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI        + +  +++  MK  G+ P+  TY+  + AC +  D++     + + K  
Sbjct: 338 ILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSV 397

Query: 396 GVIPNLVMFKCIIGMCSR 413
           GV PN+  +  +I   +R
Sbjct: 398 GVKPNVKTYTTLINGWAR 415



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 160/355 (45%), Gaps = 15/355 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPN-- 89
           N   + G++S+ +++ ++ME  G+    K Y +   N     K    AF  F+ L+ +  
Sbjct: 96  NLYAKLGKVSKALEVSKEMEHAGIKHNMKTY-SMLINGFLKLKDWANAFAIFEDLIKDGI 154

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
            P +  +N +++        + A   ++ +Q+   K   + +  +I   A+ G++     
Sbjct: 155 KPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPIIHGFARKGEMKKALD 214

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +F+ ++     P    +NALI    +   +++A  +L EM   +  V P+  T   +M  
Sbjct: 215 VFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMT--LAGVSPNEHTYTTIMHG 272

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A+ G   +A   +  +    ++     Y   +  C ++G  + A +V  +M+ + +  +
Sbjct: 273 YASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRN 332

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID     G V  A +++Q+ K +G+   I +Y+S + ACS A + Q+A +  E
Sbjct: 333 TFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIE 392

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            MKS+ +KP V T   LI          K +    +MK  GL P+   Y  L+ +
Sbjct: 393 EMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSGLKPDRAVYHCLMTS 447



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/337 (20%), Positives = 143/337 (42%), Gaps = 31/337 (9%)

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           I  G ++ A      +D+A  + + + +  I    ++Y   ++  +  GD +    V++ 
Sbjct: 19  IIYGNIIYAYCQRCNMDKAEALVREMEEEGIDAPIDIYHTMMDGYTMVGDEDKCLLVFER 78

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
             + G+ P  +    LI+     GKV  A E+ +E ++ GI   + +YS L+      K+
Sbjct: 79  FKECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKD 138

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           W  A  ++E +    +KP V   N +ITA C   ++ + +  + +M+     P T T+  
Sbjct: 139 WANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMP 198

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMCS-RRYEKARTL-------- 421
           ++    RK +++  L +    +  G IP +  +   I+G+   R+ EKA  +        
Sbjct: 199 IIHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAG 258

Query: 422 ---NEHVLSF---------NSGRP-----QIENKWTSLALMVYREAIVA----GTIPTVE 460
              NEH  +          ++G+      ++ ++   L +  Y   + A    G + +  
Sbjct: 259 VSPNEHTYTTIMHGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSAL 318

Query: 461 VVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 497
            V+K +    +P N  I   L++      D  + ++L
Sbjct: 319 AVTKEMSAQNIPRNTFIYNILIDGWARRGDVWEAADL 355


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 151/331 (45%), Gaps = 11/331 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T N+L+     + D + A  ++  +   GLK     Y +++    K  + D   E 
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEV 249

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  +V PD   FN LI    + G V  A     EM      V PD ++   L+   
Sbjct: 250 FRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRY--VTPDVVSFSCLIGLF 307

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           +  G++D A    + +    +     +YT+ I    + G    A  V D+M   G +PD 
Sbjct: 308 SRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDV 367

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L++      ++  A ++L E + +G++  + ++++L+       N++ AL+L++ 
Sbjct: 368 VTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDT 427

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +   +L+P V T N+LI  +C    L K  E+  DM +  + PN ITYSIL+ +   K  
Sbjct: 428 LLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQ 487

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           VE     L +  + G +PN+  +  II G C
Sbjct: 488 VEDAFGFLDEMVKKGNLPNIRTYNSIIKGYC 518



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 179/404 (44%), Gaps = 33/404 (8%)

Query: 39  GRISECIDLLEDMERK----------GLLDMDKVYHARFFNV-----CKSQKAIKEAFRF 83
           GR SEC  LL  M R+           LL        + F++      +S+K  +EAF  
Sbjct: 51  GRASECQSLLLRMSRRRGASRREIVSSLLASSPTPQPQVFDLLIRTYTQSRKP-REAFEA 109

Query: 84  FKL-----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           F+L     VP P  S  N L++V + +     A +  RLV  +  + +      ++ +  
Sbjct: 110 FRLLLDHRVPVPA-SASNALLAVLSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYC 168

Query: 139 KSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           K+ + D     +         PD V  N LI A  ++G VD A  ++  M      + P 
Sbjct: 169 KTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANR--GLKPG 226

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +T  +++K      + D+A+EV++ + + ++      + I I    + G+ + A   Y 
Sbjct: 227 IVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYK 286

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M  + V PD V  S LI      G+++ A   L+E K  G+    + Y+ ++G    A 
Sbjct: 287 EMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAG 346

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
           +  +AL + + M      P V T N L+  LC   +L    ++L++M+  G+ P+  T++
Sbjct: 347 SMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFT 406

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
            L+    R+ + E  L L        + P++V +  +I GMC +
Sbjct: 407 TLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRK 450



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 160/367 (43%), Gaps = 29/367 (7%)

Query: 77  IKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           +KEA +F+K + +    P + +F+ L+ + +   + + A   LR ++  GL  D  +YT 
Sbjct: 278 VKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTM 337

Query: 133 LITTCAKSGKVDAMFE--------NVKPDRVVFNALITA-CGQSGAVDRAFDVLAEMNAE 183
           +I    ++G +                PD V +N L+   C Q   +D A  +L EM  E
Sbjct: 338 VIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLD-AEKLLNEM--E 394

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
              V PD  T   L+      G  + A +++  + +  ++     Y   I+   + GD  
Sbjct: 395 ERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLA 454

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  ++DDM  + ++P+ +  S LID     G+VE AF  L E   +G    I +Y+S++
Sbjct: 455 KANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSII 514

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                + N +K  +  + M+   + P + T N LI      + +     V + M+   + 
Sbjct: 515 KGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVR 574

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 423
           P+ +TY++++     + +++    +     + G+ P+             RY     +N 
Sbjct: 575 PDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPD-------------RYTYMSLING 621

Query: 424 HVLSFNS 430
           HV + NS
Sbjct: 622 HVTAGNS 628



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 110/265 (41%), Gaps = 37/265 (13%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P   VF+ LI    QS     AF+    +     PV        AL+   + AG    A+
Sbjct: 85  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPAS--ASNALLAVLSRAGWPHLAQ 142

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           E Y+++   + +       I ++   +T +++ A +V  +M K+ V PD V  + LID  
Sbjct: 143 EAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDAR 202

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
             AG V+A                                   A+ L + M +  LKP +
Sbjct: 203 FRAGDVDA-----------------------------------AIALVDSMANRGLKPGI 227

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T N+++  LC   +  K  EV   M    + P+  +++IL+    R  +V+  +    +
Sbjct: 228 VTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKE 287

Query: 392 AKEDGVIPNLVMFKCIIGMCSRRYE 416
            +   V P++V F C+IG+ SRR E
Sbjct: 288 MQHRYVTPDVVSFSCLIGLFSRRGE 312



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 117/273 (42%), Gaps = 15/273 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L +Q R+ +   LL +ME +G+      +       C+ Q   + A + F  +     
Sbjct: 375 NGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCR-QGNFENALQLFDTLLRQRL 433

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            P + T+N L+       D   A ++   +    +  +   Y+ LI +  + G+V+  F 
Sbjct: 434 RPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFG 493

Query: 148 ---ENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              E VK    P+   +N++I    +SG V +    L +M  +   V PD IT   L+  
Sbjct: 494 FLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQD--NVFPDLITFNTLIHG 551

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                 +  A  V+ ++ K  ++     Y + IN  S+ G+ + A  V+  M   G+ PD
Sbjct: 552 YIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPD 611

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
                +LI+    AG  + AF++  E  ++G +
Sbjct: 612 RYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFA 644



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 104/248 (41%), Gaps = 20/248 (8%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK-----EAFRF 83
           +H Y    RQG     + L + + R+ L      Y++    +C+     K     +    
Sbjct: 409 IHGY---CRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHA 465

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +++PN    T+++L+         E AF  L  + + G   + + Y ++I    +SG V
Sbjct: 466 REILPNHI--TYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNV 523

Query: 144 D--AMF------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                F      +NV PD + FN LI    +   +  AF+V   M  E+  V PD +T  
Sbjct: 524 KKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEM--VRPDAVTYN 581

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++   +  G +  A  V+K +    I+     Y   IN     G+ + A  ++D+M  +
Sbjct: 582 MIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHR 641

Query: 256 GVIPDEVF 263
           G  PD+ F
Sbjct: 642 GFAPDDKF 649


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 176/392 (44%), Gaps = 17/392 (4%)

Query: 32  YNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFF 84
           YN +++     G +     LL  ME +G      +Y      F  +   +K +    R  
Sbjct: 239 YNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLK 298

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
               +PT +T+  ++ +   + +   A  +L  + + G+  +  +Y  ++   A+ G   
Sbjct: 299 ACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFT 358

Query: 145 AMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           A F+         +KPD V +N L+ A  ++G +D+A  VL   N + + + P   T  +
Sbjct: 359 AAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLE--NIQANRLLPTIETYTS 416

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++      G + +A EV+  I    ++     Y   ++  ++    E A  + D+M   G
Sbjct: 417 ILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANG 476

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V+P+E   +AL +    AG VE AF + Q  K + +++ I++Y +L+ AC  +   Q+A+
Sbjct: 477 VVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAV 536

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           E+++ +    LK    T   ++       +L K  ++L DM+  G   +TI Y+  + AC
Sbjct: 537 EVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKAC 596

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            R  D E     L+  +E  +  N   +  +I
Sbjct: 597 FRSGDTEEVTETLAVMREKKLEVNARTYTTLI 628



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 178/382 (46%), Gaps = 43/382 (11%)

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           + +A  EA R   + PN  +  +  L+   A ++D EGA      +   G++ +  ++ +
Sbjct: 149 AARATFEAMRASHIKPN--VHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCS 206

Query: 133 LITTCAKSGKVDAM--------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMN--- 181
           +I+  A +G  +A          EN+ P  +V+N+++ A  Q+G ++    +LA+M    
Sbjct: 207 IISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEG 266

Query: 182 ---------------AEVHP---------------VDPDHITIGALMKACANAGQVDRAR 211
                          AE+                 + P   T G ++K    AG + +A 
Sbjct: 267 FQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKAL 326

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           ++ + + K+ +     +Y + ++  ++ GD+  A  V++DM   G+ PD V  + L+   
Sbjct: 327 DILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAF 386

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
             AG+++ A  +L+  +   +   I +Y+S++       + QKALE+++ +K+  L+P V
Sbjct: 387 CKAGRMDKALGVLENIQANRLLPTIETYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGV 446

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            + N+L++ L    Q+     +L +M + G+ PN  +Y+ L     R  DVE    +  +
Sbjct: 447 VSYNSLLSGLAKARQMENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQR 506

Query: 392 AKEDGVIPNLVMFKCIIGMCSR 413
            K++ +  ++V +  ++  C +
Sbjct: 507 MKKENLAIDIVAYGALLKACCK 528



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/443 (21%), Positives = 197/443 (44%), Gaps = 26/443 (5%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+++  P L  + +L+   A   D   A      ++ + +K +  +YT+LI   A++  +
Sbjct: 123 FQVIDKPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDM 182

Query: 144 DA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +         + + ++ +  VF ++I+    +G  + A     +  AE   + P  I   
Sbjct: 183 EGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAE--NLVPGGIVYN 240

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           ++++A   AG ++    +   + +   +G   +YT  +N  ++  D E   S +  +   
Sbjct: 241 SIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKAC 300

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G+ P       ++     AG +  A +IL+E    G+S   + Y+ +M   +   ++  A
Sbjct: 301 GLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAA 360

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            +++E M S  LKP + T N L+ A C   ++ K + VL ++++  L P   TY+ +L  
Sbjct: 361 FKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDG 420

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRP 433
             +   ++  L +  + K  G+ P +V +  ++ G+  +R+ E AR + + +L+  +G  
Sbjct: 421 YVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLA--NGVV 478

Query: 434 QIENKWTSLALMVYREAIVAGTIPTVEVVSKV-LGCLQLPYNADIR--------ERLVEN 484
             E  +T+L     R   V       + + K  L    + Y A ++        +R VE 
Sbjct: 479 PNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEV 538

Query: 485 LGVSADALKRSN---LCSLIDGF 504
                DA  + N    C+++DG+
Sbjct: 539 FQQITDAGLKHNRITYCTMLDGW 561



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 137/316 (43%), Gaps = 13/316 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           R G  +    + EDM   GL      Y+      CK+ +  K       +  N   PT+ 
Sbjct: 353 RGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIE 412

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAM 146
           T+  ++         + A +V   ++ AGL+     Y +L++  AK+ +       +D M
Sbjct: 413 TYTSILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEM 472

Query: 147 FEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             N V P+   + AL     ++G V++AF +   M  E   +D   +  GAL+KAC  +G
Sbjct: 473 LANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDI--VAYGALLKACCKSG 530

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            + RA EV++ I    +K     Y   ++  ++ G+   A  +  DM K G   D +  +
Sbjct: 531 AMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYT 590

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           + I     +G  E   E L   + + + V   +Y++L+     A +  +A+  YE  K+ 
Sbjct: 591 SFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKAS 650

Query: 326 KLKPTVSTMNALITAL 341
            L+   +  N L++ L
Sbjct: 651 GLQLDSALSNCLLSGL 666



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/382 (19%), Positives = 156/382 (40%), Gaps = 42/382 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
             + G +++ +D+LE+M++ G+                                +P    
Sbjct: 316 FTKAGNMAKALDILEEMDKHGV--------------------------------SPNKMI 343

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENVK 151
           + M+M   A   D   AF+V   +  AGLK D   Y  L+    K+G++D    + EN++
Sbjct: 344 YAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQ 403

Query: 152 PDRVV-----FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
            +R++     + +++    + G + +A +V   +  +   + P  ++  +L+   A A Q
Sbjct: 404 ANRLLPTIETYTSILDGYVKGGHIQKALEVFDRI--KTAGLRPGVVSYNSLLSGLAKARQ 461

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           ++ AR +   +    +      YT      ++ GD E A  ++  M K+ +  D V   A
Sbjct: 462 MENARLMLDEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGA 521

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           L+     +G ++ A E+ Q+  + G+    I+Y +++   +      KA +L + M+   
Sbjct: 522 LLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHG 581

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
                    + I A        +  E L+ M+   L  N  TY+ L+       D +  +
Sbjct: 582 FHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAI 641

Query: 387 MLLSQAKEDGVIPNLVMFKCII 408
               QAK  G+  +  +  C++
Sbjct: 642 SCYEQAKASGLQLDSALSNCLL 663


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 111/483 (22%), Positives = 203/483 (42%), Gaps = 29/483 (6%)

Query: 71  CKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           C   + + EAF   +++ +    P  S +  L+   +   +S+    +   +QE G + +
Sbjct: 36  CVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVN 95

Query: 127 CKLYTTLITTCAKSGKVDA---MFENVKP-----DRVVFNALITACGQSGAVDRAFDVLA 178
             L TTLI   ++ G+VDA   + + +K      D V++N  I   G+ G VD A+    
Sbjct: 96  VHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFH 155

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
           EM A  + + PD +T  ++M     A ++D A E+++ + +         Y   I     
Sbjct: 156 EMKA--NGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGS 213

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G ++ A S+ +    KG IP  V  + ++   G  GK + A  I +E K   +   + +
Sbjct: 214 AGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMP-NLPT 272

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y+ ++G    A N + A ++ + MK   L P V T+N +I  LC   +L +   +   M 
Sbjct: 273 YNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMD 332

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRY 415
                P+  T+  L+    ++  V+    +  +  +   IPN+V++  +I     C R+ 
Sbjct: 333 YKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKE 392

Query: 416 EKARTLNEHVLSFNSGRPQIENKW---------TSLALMVYREAIVAGTIPTVEVVSKVL 466
           +  +   E + S  S    + N +         T     ++ E    G +P     S ++
Sbjct: 393 DGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILI 452

Query: 467 GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIV 524
             L     A     L   +      L      ++IDGF +     +A+ LLEE  + G  
Sbjct: 453 HSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHH 512

Query: 525 PCV 527
           P V
Sbjct: 513 PTV 515



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 118/513 (23%), Positives = 205/513 (39%), Gaps = 57/513 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC----KSQKAIKEAFRFFK------L 86
           R+GR+   + LL++M +    D D V     +NVC         +  A++FF       L
Sbjct: 108 REGRVDAALSLLDEM-KSNTFDADIV----LYNVCIDCFGKVGKVDMAWKFFHEMKANGL 162

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           VP+    T+  +M V   +   + A ++   +++         Y T+I     +GK D  
Sbjct: 163 VPDDV--TYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEA 220

Query: 147 FENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGAL 197
           +  ++        P  V +N ++T  G+ G  D+A  +  EM  +  P  P + I IG L
Sbjct: 221 YSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMPNLPTYNIIIGML 280

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            KA    G V+ A +V   + +  +        I I+   +    + ACS+++ M  K  
Sbjct: 281 CKA----GNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVC 336

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD     +LID  G  G+V+ A+ I +   +      ++ Y+SL+         +   +
Sbjct: 337 SPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHK 396

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           +Y+ M      P +  +N  +  +    +  K   +  ++K+ G  P+T +YSIL+ +  
Sbjct: 397 MYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLV 456

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIE 436
           +         L    K+ G + +   +  +I G C                  SG+    
Sbjct: 457 KAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFC-----------------KSGKV--- 496

Query: 437 NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSN 496
           NK    A  +  E    G  PTV     V+  L      D    L E    +   L +  
Sbjct: 497 NK----AYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVI 552

Query: 497 LCSLIDGFGEYD--PRAFSLLEEAASFGIVPCV 527
             SLIDGFG+      A+ ++EE    G+ P V
Sbjct: 553 YSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNV 585



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 161/390 (41%), Gaps = 58/390 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDK-----VYHA---RFFNVCKSQKAIKEAFRFFKL 86
           L +QGR+ +   + E M     LD D+     VY +    FF   + +   K      + 
Sbjct: 350 LGKQGRVDDAYRIYERM-----LDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMRS 404

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             +P L   N  M     + ++E    +   ++  G   D + Y+ LI +  K+G     
Sbjct: 405 GCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARET 464

Query: 147 FE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
           +E            D   +N +I    +SG V++A+ +L EM    H   P  +T G+++
Sbjct: 465 YELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGH--HPTVVTYGSVV 522

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              A   ++DR  E Y +                                +++    G+ 
Sbjct: 523 DGLA---KIDRLDEAYML--------------------------------FEEAKSNGIE 547

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
            ++V  S+LID  G  G+V+ A+ +++E   +G++  + +++ L+     A+   +AL  
Sbjct: 548 LNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVC 607

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++ MK +K  P   T   LI  LC   +  K      +M+  GL PNTITY+ ++    +
Sbjct: 608 FQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAK 667

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             +V     L  + +  G IP+   +  +I
Sbjct: 668 SGNVAQASSLFERFRASGGIPDSASYNAMI 697



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 148/350 (42%), Gaps = 32/350 (9%)

Query: 160 LITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHIT-IGALMKACANAGQVDRAREVYKMI 217
           L+ +C +S  +  AFD+L  M + +  P    + T IGAL    +  G+ DR   ++  +
Sbjct: 32  LVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGAL----SEVGESDRMLALFNQM 87

Query: 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 277
            +   +    + T  I   S+ G  + A S+ D+M       D V  +  ID  G  GKV
Sbjct: 88  QELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEMKSNTFDADIVLYNVCIDCFGKVGKV 147

Query: 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
           + A++   E K  G+    ++Y+S+MG    A    +A+E++E M+  +  P     N +
Sbjct: 148 DMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTM 207

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           I       +  +   +L   ++ G  P+ + Y+ +L    +K   +  L +  + K D  
Sbjct: 208 IMGYGSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDA- 266

Query: 398 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV-AGTI 456
           +PNL  +  IIGM  +                +G  +        A    R+A+  AG  
Sbjct: 267 MPNLPTYNIIIGMLCK----------------AGNVE--------AAFKVRDAMKEAGLF 302

Query: 457 PTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 506
           P V  ++ ++  L      D    + E +     +   +  CSLIDG G+
Sbjct: 303 PNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGK 352



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 170/405 (41%), Gaps = 25/405 (6%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
            D    L +YN +I    + G +     + + M+  GL    +  +     +CK+QK + 
Sbjct: 264 RDAMPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQK-LD 322

Query: 79  EAFRFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA   F+     V +P  +TF  L+         + A+++   + +A    +  +YT+LI
Sbjct: 323 EACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLI 382

Query: 135 TT---CAKSGKVDAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
                C +      M++ +      PD ++ N  +    ++G  ++   +  E+ A    
Sbjct: 383 RNFFKCDRKEDGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGETEKGRALFEEIKA--RG 440

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWE 243
             PD  +   L+ +   AG    ARE Y++ +    +G       Y   I+   ++G   
Sbjct: 441 FLPDTRSYSILIHSLVKAG---FARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVN 497

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  + ++M   G  P  V   +++D      +++ A+ + +EAK+ GI +  + YSSL+
Sbjct: 498 KAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLI 557

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                     +A  + E M    L P V T N L+  L   +++ + +     MK L   
Sbjct: 558 DGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCT 617

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           PN ITY IL+    +        +   + ++ G+ PN + +  +I
Sbjct: 618 PNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMI 662



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 60/299 (20%), Positives = 135/299 (45%), Gaps = 18/299 (6%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK--- 85
           +HS   L++ G   E  +L   M+ +G +   + Y+      CKS K + +A++  +   
Sbjct: 452 IHS---LVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGK-VNKAYQLLEEMK 507

Query: 86  -LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
            +  +PT+ T+  ++   A     + A+ +    +  G++ +  +Y++LI    K G+VD
Sbjct: 508 TMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVD 567

Query: 145 AMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
             +        + + P+   +N L+    ++  ++ A      M        P+ IT   
Sbjct: 568 EAYLVMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKD--LKCTPNQITYCI 625

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+       + ++A   ++ + K  +K     YT  I+  +++G+   A S+++     G
Sbjct: 626 LINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASG 685

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            IPD    +A+I+    A +   A+++ +E + +G S+   +  +L+ A   A+  ++A
Sbjct: 686 GIPDSASYNAMIEGLSIANRALDAYQLFEETRLKGCSIHTKTCVALLDALHKAECLEQA 744



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/268 (19%), Positives = 107/268 (39%), Gaps = 28/268 (10%)

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           +T ++++   +  +M+  G  P       L+     + K+  AF++LQ  ++        
Sbjct: 3   RTRNFDYLEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFS 62

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +Y++L+GA S      + L L+  M+ +  +  V  +  LI       ++   + +L +M
Sbjct: 63  AYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAALSLLDEM 122

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK 417
           KS     + + Y++ +    +   V++      + K +G++P+ V +  ++G+      K
Sbjct: 123 KSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLC----K 178

Query: 418 ARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVA--------------------GTIP 457
           A  L+E V  F     Q+E          Y   I+                     G IP
Sbjct: 179 ANRLDEAVEIFE----QMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAKGCIP 234

Query: 458 TVEVVSKVLGCLQLPYNADIRERLVENL 485
           +V   + +L CL      D   R+ E +
Sbjct: 235 SVVAYNCILTCLGKKGKTDKALRIFEEM 262


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 197/425 (46%), Gaps = 33/425 (7%)

Query: 10  QFPYPNGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA 65
           Q  Y     A Y+ DV     +YN L+    + G++ E + + +   ++G +     Y+A
Sbjct: 105 QALYERMIKAGYSPDVV----TYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNA 160

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQE 120
                CK+ K + EA R  + + +    P + T+N L++ +C + +  E       L+ +
Sbjct: 161 LINGFCKADK-LDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARM----LIVD 215

Query: 121 AGLKADCKLYTTLIT-TCAKSGKVDA--------MFENVKPDRVVFNALITACGQSGAVD 171
            G   +   Y+TLI+  C +  ++++        +    KPD V +NALI    +   V 
Sbjct: 216 KGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVS 275

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
            A  +   +  + +  +P+  T   L+       +V+ A E++  + K+ ++     YT+
Sbjct: 276 EALKLFGSVLRQGY--EPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTV 333

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            I+   + G  E A  +  DM +KG +PD V  +A+I+      +V+ A  +L   + +G
Sbjct: 334 FIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG 393

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
            S   IS+++L+     A  W+KA+  ++ M    +KPTV T N L+  LC   Q  +  
Sbjct: 394 CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIK 453

Query: 352 EVLSDMKSL---GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           E ++   ++   G  P+ +TYS L+    +   ++    LL   +  G IPN+  +  +I
Sbjct: 454 EAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLI 513

Query: 409 -GMCS 412
            G+C 
Sbjct: 514 SGLCG 518



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 180/399 (45%), Gaps = 27/399 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN-- 89
           N L + GR+ E   L+ D   KG       Y      +C+  + ++ A +   K+V N  
Sbjct: 198 NGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGC 254

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + ++N L+   A  +    A ++   V   G + +   Y  LI    K  +V+  FE
Sbjct: 255 KPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFE 314

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    ++PD + +   I    ++G V+ A  +L +M+ +     PD ++  A++  
Sbjct: 315 LFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEK--GCVPDVVSHNAVING 372

Query: 201 CANAGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQ--TGDWEFACSVYDDMTKKGV 257
                +VD A EV  ++     KG +P   +     C Q   G W+ A + + +M K+GV
Sbjct: 373 LCKEKRVDEA-EV--LLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGV 429

Query: 258 IPDEVFLSALIDF---AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            P  V  + L+D    A   G+++ A  +      +G    +++YS+L+     A     
Sbjct: 430 KPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDD 489

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A  L   M++    P V T N+LI+ LC  D++ + +E+   M   G  P+TITY  ++ 
Sbjct: 490 ARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIIS 549

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVM-FKCIIGMCS 412
           A  +++ V+  L L   + E GV+P   M F  I G+C+
Sbjct: 550 ALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCA 588



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 127/260 (48%), Gaps = 18/260 (6%)

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-----TPEVYTIAINCCSQ 238
           V    PD  T+G L+++   +G++++A   ++ + +  +KG     T  +Y   +   S+
Sbjct: 9   VRIYSPDAYTVGILLRSLLKSGKIEKA---HRFVEQLLVKGLCDISTFNIYISGLCRASR 65

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            GD   A +V+D M K G  P+ +  +AL+    + G++  A  + +     G S  +++
Sbjct: 66  IGD---AQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVT 122

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y++L+          +AL++++        P V T NALI   C  D+L +   +L  M 
Sbjct: 123 YNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMV 182

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS--RRY 415
           S  L P+ +TY+ L+    +   V+   ML+    + G  PN++ +  +I G+C   RR 
Sbjct: 183 SESLVPDVVTYNSLVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLISGLCRELRRL 239

Query: 416 EKARTLNEHVLSFNSGRPQI 435
           E AR L E ++  N  +P I
Sbjct: 240 ESARQLLEKMV-LNGCKPDI 258



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 180/430 (41%), Gaps = 54/430 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAFRFFKLVPN 89
           L++ G+I +    +E +  KGL D+   ++     +C++ +      + +  R     PN
Sbjct: 26  LLKSGKIEKAHRFVEQLLVKGLCDI-STFNIYISGLCRASRIGDAQTVFDGMRKHGFWPN 84

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
               T+N L+S +C   + S+      R+++ AG   D   Y TL+    K GK+D    
Sbjct: 85  RI--TYNALLSGLCNGGRMSDAQALYERMIK-AGYSPDVVTYNTLLHGFCKVGKLDEALK 141

Query: 145 ----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
               A+     PD V +NALI    ++  +D A  +L  M +E   + PD +T  +L+  
Sbjct: 142 IFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSE--SLVPDVVTYNSLVNG 199

Query: 201 CANAGQVDRAR------------------------------EVYKMIHKYNIKGT-PEV- 228
               G+VD AR                                 +++ K  + G  P++ 
Sbjct: 200 LCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIV 259

Query: 229 -YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y   I+  ++      A  ++  + ++G  P+    + LID      +V  AFE+    
Sbjct: 260 SYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGL 319

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
              G+    I+Y+  +     A   + AL + + M      P V + NA+I  LC   ++
Sbjct: 320 VKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRV 379

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            +   +LS M++ G  PN I+++ L+    R    +  +    +  + GV P +V +  +
Sbjct: 380 DEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNIL 439

Query: 408 I-GMCSRRYE 416
           + G+C  R E
Sbjct: 440 VDGLCKARQE 449



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 141/345 (40%), Gaps = 26/345 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           SYN LI    R+  +SE + L   + R+G       Y+     + K  + + EAF  F  
Sbjct: 260 SYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDR-VNEAFELFSG 318

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           LV +   P   T+ + +     +   E A  +L+ + E G   D   +  +I    K  +
Sbjct: 319 LVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKR 378

Query: 143 VDAM--------FENVKPDRVVFNALITACGQ--SGAVDRAFDVLAEMNAEVHPVDPDHI 192
           VD           +   P+ + FN LI  CGQ  +G   +A     EM      V P  +
Sbjct: 379 VDEAEVLLSGMEAKGCSPNAISFNTLI--CGQCRAGKWKKAMTTFKEMLK--RGVKPTVV 434

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVY 249
           T   L+     A Q  R +E   +      KG  P+V  Y+  I+   + G  + A  + 
Sbjct: 435 TYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLL 494

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
             M  KG IP+    ++LI       KV+ A E+      +G     I+Y +++ A    
Sbjct: 495 GAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQ 554

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
           +   KAL L++      + PT     +LI  LC   ++ + +++L
Sbjct: 555 EMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLL 599



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 120/267 (44%), Gaps = 20/267 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + GR+ + + +L+DM+ KG +  D V H    N    +K + EA      +     +P
Sbjct: 338 LCKAGRVEDALLMLKDMDEKGCVP-DVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSP 396

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---GKV---- 143
              +FN L+     +   + A    + + + G+K     Y  L+    K+   G++    
Sbjct: 397 NAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAI 456

Query: 144 ---DAMFENVK-PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
              DAM E  + PD V ++ALI   G++G +D A  +L  M A+     P+  T  +L+ 
Sbjct: 457 TLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAK--GCIPNVYTYNSLIS 514

Query: 200 ACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                 +VD A E++  M+ K  +  T    TI    C Q    + A +++D   + GV+
Sbjct: 515 GLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEM-VDKALALFDGSLEAGVV 573

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQ 285
           P      +LID      +V+ A ++LQ
Sbjct: 574 PTSGMYFSLIDGLCAVARVDEALKLLQ 600


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 186/399 (46%), Gaps = 17/399 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RF 83
           +YN LI    RQG + E  +L++ M  KGL      Y+A    +CK+ K ++        
Sbjct: 134 TYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM 193

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K+  +P  +T+N+L+  C  + +   A ++   +   G+  D   ++ LI   +K+G +
Sbjct: 194 LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCL 253

Query: 144 DA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D     F ++K     PD V++  LI    ++G +  A  V  EM  +   +D   +T  
Sbjct: 254 DQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDV--VTYN 311

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++        +  A E++  + +  +      +T  IN  S+ G+   A ++++ M ++
Sbjct: 312 TILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQR 371

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + PD V  + LID      ++E   E+  +  ++ I    ISY  L+    N     +A
Sbjct: 372 NLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEA 431

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             L++ M     + T+ T N ++   C      K  E LS+M   G+ P+ ITY+ L+  
Sbjct: 432 FRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLING 491

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
             ++++++    L+++ +  G++P+++ +  I+   SR+
Sbjct: 492 FIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQ 530



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 162/351 (46%), Gaps = 15/351 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L++ G +    ++ +++ R G+       +     +CK+QK I+    F   +      P
Sbjct: 72  LVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQK-IENTKSFLSDMEEKGVFP 130

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------V 143
            + T+N L++        E AF+++  +   GLK     Y  +I    K+GK       +
Sbjct: 131 DVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVL 190

Query: 144 DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M +  + PD   +N L+  C ++  +  A  +  EM ++   V PD ++  AL+   +
Sbjct: 191 DEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQ--GVVPDLVSFSALIGLLS 248

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G +D+A + ++ +    +     +YTI I    + G    A  V D+M ++G + D V
Sbjct: 249 KNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVV 308

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + +++       +  A E+  E   +G+     ++++L+   S   N  KA+ L+E M
Sbjct: 309 TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMM 368

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
               LKP V T N LI   C G ++ K  E+ +DM S  + PN I+Y IL+
Sbjct: 369 IQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 419



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 99/190 (52%), Gaps = 7/190 (3%)

Query: 231 IAINCCS-------QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
           ++IN C+       + G  + A  +Y ++ + GV  +   L+ +I+      K+E     
Sbjct: 60  VSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSF 119

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           L + + +G+   +++Y++L+ A       ++A EL + M    LKP V T NA+I  LC 
Sbjct: 120 LSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCK 179

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
             +  +   VL +M  +G+ P+T TY+ILLV C R D++     +  +    GV+P+LV 
Sbjct: 180 TGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVS 239

Query: 404 FKCIIGMCSR 413
           F  +IG+ S+
Sbjct: 240 FSALIGLLSK 249



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 2/156 (1%)

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            A K+    E  +  K++G+ V I + +SL+G          A E+Y+ +    ++  V 
Sbjct: 39  QARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVY 98

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T+N +I ALC   ++  T   LSDM+  G+ P+ +TY+ L+ A  R+  +E    L+   
Sbjct: 99  TLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM 158

Query: 393 KEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
              G+ P +  +  II G+C + +Y +A+ + + +L
Sbjct: 159 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEML 194



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 110/255 (43%), Gaps = 19/255 (7%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V    +++  LI    + G +++ + L E M ++ L      Y+      CK  +  K  
Sbjct: 338 VFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVN 397

Query: 81  FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             +  ++     P   ++ +L++   +      AF++   + E G +A      T++   
Sbjct: 398 ELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGY 457

Query: 138 AKSG---KVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            ++G   K D    N     + PD + +N LI    +   +DRAF ++ +M  E   + P
Sbjct: 458 CRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM--ENSGLLP 515

Query: 190 DHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           D IT   ++   +  G++  A  +  KMI +  +      YT  IN      + + A  V
Sbjct: 516 DVITYNVILNGFSRQGRMQEAELIMLKMIER-GVNPDRSTYTSLINGHVTQNNLKEAFRV 574

Query: 249 YDDMTKKGVIPDEVF 263
           +D+M ++G +PD+ F
Sbjct: 575 HDEMLQRGFVPDDKF 589


>gi|168055626|ref|XP_001779825.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668737|gb|EDQ55338.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 734

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 187/435 (42%), Gaps = 68/435 (15%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLS 93
           L++ GR   C++L+E +   G    + +      + C   + I  A RF +L+  NP   
Sbjct: 221 LVKAGRTEFCVELVEYLTESGFFVRNLIDPVSVVSSCAKLRNIDLARRFVELLSRNPW-- 278

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---GKVDAMFENV 150
            +N+++   +   +    F+VL  ++E G+  D   Y  LI +C +     K   +FE +
Sbjct: 279 HYNLIIREFSRHGNLRSCFKVLDFMKELGVMPDVFTYRVLIDSCGRHKEPSKATIVFEKM 338

Query: 151 -----KPDRVVFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                +P+R V+N+++    G    V R F      + +   +  D  +   L+KA A +
Sbjct: 339 LNDGFEPNRFVYNSIMNVNVGNLSEVRRYFQ-----HMQGAGIAADVTSYNILLKAYAAS 393

Query: 205 GQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           G+ D A ++Y  I K   K T +V  Y+  IN   +   WE A  V  DM + GV P+ V
Sbjct: 394 GRADLAGDLYAQIKKAG-KVTLDVVFYSTLINVFGKAKMWEEALRVKADMLEAGVTPNVV 452

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +++I     AG V+ +F    E  N G    +  Y+ L+ AC  A  + +A  L+E  
Sbjct: 453 TWTSIIGACATAGLVDQSFREFDEMLNAGCRPNVNCYNMLLQACIMASQFDRAFLLFEEW 512

Query: 323 KS-------------------------------------------IKL---KPTVSTMNA 336
           K+                                           ++L   +P + T N 
Sbjct: 513 KTTGRMRSYSEIFNYSAPLAKTHELITVIPGSLLQSNLGEKIDEDVRLACCRPNIITYNC 572

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           ++ A C G    K   ++ +M++LGL P+  ++SILL +   K DVE     L + K  G
Sbjct: 573 MMKA-C-GSASEKVRSLMREMRALGLVPDVKSWSILLDSYGSKGDVEGASEALEEMKAAG 630

Query: 397 VIPNLVMFKCIIGMC 411
             P++V +  +I  C
Sbjct: 631 FKPDVVAYTSLIQAC 645



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 105/428 (24%), Positives = 188/428 (43%), Gaps = 55/428 (12%)

Query: 32  YNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHAR-FFNVCKSQKAIKEAFRFFKL 86
           YN +IR+    G +  C  +L+ M+  G+  M  V+  R   + C   K   +A   F+ 
Sbjct: 280 YNLIIREFSRHGNLRSCFKVLDFMKELGV--MPDVFTYRVLIDSCGRHKEPSKATIVFEK 337

Query: 87  VPN----PTLSTFNMLMSV-CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + N    P    +N +M+V   +  +    FQ +   Q AG+ AD   Y  L+   A SG
Sbjct: 338 MLNDGFEPNRFVYNSIMNVNVGNLSEVRRYFQHM---QGAGIAADVTSYNILLKAYAASG 394

Query: 142 KVDA---MFENVKP------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           + D    ++  +K       D V ++ LI   G++   + A  V A+M      V P+ +
Sbjct: 395 RADLAGDLYAQIKKAGKVTLDVVFYSTLINVFGKAKMWEEALRVKADMLEA--GVTPNVV 452

Query: 193 TIGALMKACANAGQVDRA-REVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVY 249
           T  +++ ACA AG VD++ RE  +M+   N    P V  Y + +  C     ++ A  ++
Sbjct: 453 TWTSIIGACATAGLVDQSFREFDEML---NAGCRPNVNCYNMLLQACIMASQFDRAFLLF 509

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI---------LQEAKNQGISVG----- 295
           ++    G +      S + +++    K      +         L E  ++ + +      
Sbjct: 510 EEWKTTGRMRS---YSEIFNYSAPLAKTHELITVIPGSLLQSNLGEKIDEDVRLACCRPN 566

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           II+Y+ +M AC +A   +K   L   M+++ L P V + + L+ +      +    E L 
Sbjct: 567 IITYNCMMKACGSAS--EKVRSLMREMRALGLVPDVKSWSILLDSYGSKGDVEGASEALE 624

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 415
           +MK+ G  P+ + Y+ L+ AC +   +E      S+ K  GV PN V +  ++    RR+
Sbjct: 625 EMKAAGFKPDVVAYTSLIQACVQAGHLEKAFDYFSKMKAAGVRPNAVTYNSLL----RRH 680

Query: 416 EKARTLNE 423
               TL E
Sbjct: 681 RNYGTLPE 688



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 138/318 (43%), Gaps = 57/318 (17%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSG--------K 142
           ++++N+L+   A+S  ++ A  +   +++AG +  D   Y+TLI    K+         K
Sbjct: 380 VTSYNILLKAYAASGRADLAGDLYAQIKKAGKVTLDVVFYSTLINVFGKAKMWEEALRVK 439

Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKAC 201
            D +   V P+ V + ++I AC  +G VD++F    EM NA   P   +      L++AC
Sbjct: 440 ADMLEAGVTPNVVTWTSIIGACATAGLVDQSFREFDEMLNAGCRP---NVNCYNMLLQAC 496

Query: 202 ANAGQVDRA------------REVYKMIHKYN--IKGTPEVYTIAINCCSQTG------- 240
             A Q DRA               Y  I  Y+  +  T E+ T+      Q+        
Sbjct: 497 IMASQFDRAFLLFEEWKTTGRMRSYSEIFNYSAPLAKTHELITVIPGSLLQSNLGEKIDE 556

Query: 241 DWEFAC-----------------------SVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 277
           D   AC                       S+  +M   G++PD    S L+D  G  G V
Sbjct: 557 DVRLACCRPNIITYNCMMKACGSASEKVRSLMREMRALGLVPDVKSWSILLDSYGSKGDV 616

Query: 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
           E A E L+E K  G    +++Y+SL+ AC  A + +KA + +  MK+  ++P   T N+L
Sbjct: 617 EGASEALEEMKAAGFKPDVVAYTSLIQACVQAGHLEKAFDYFSKMKAAGVRPNAVTYNSL 676

Query: 338 ITALCDGDQLPKTMEVLS 355
           +    +   LP+    L+
Sbjct: 677 LRRHRNYGTLPEVQRALA 694



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 13/187 (6%)

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAG-------HAGKVEAAFEILQEAKNQGISV-GIIS 298
           S+  ++TK G         + +D           AG+ E   E+++     G  V  +I 
Sbjct: 190 SILRNLTKAGYTAPNFVQKSTLDLLADELLSLVKAGRTEFCVELVEYLTESGFFVRNLID 249

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
             S++ +C+  +N   A    E      L       N +I        L    +VL  MK
Sbjct: 250 PVSVVSSCAKLRNIDLARRFVE-----LLSRNPWHYNLIIREFSRHGNLRSCFKVLDFMK 304

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
            LG+ P+  TY +L+ +C R  +     ++  +   DG  PN  ++  I+ +      + 
Sbjct: 305 ELGVMPDVFTYRVLIDSCGRHKEPSKATIVFEKMLNDGFEPNRFVYNSIMNVNVGNLSEV 364

Query: 419 RTLNEHV 425
           R   +H+
Sbjct: 365 RRYFQHM 371


>gi|303280720|ref|XP_003059652.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226458307|gb|EEH55604.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 196

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 100/185 (54%), Gaps = 2/185 (1%)

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
           C + G WE A  ++D M  KG+  + +  SALI+  G + + + A E+ +E + +G+   
Sbjct: 2   CGRAGAWEKAVELHDHMKAKGMGANTITCSALINACGKSRQWKKALEVFEEMRAEGVEAN 61

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           I +YS+L+ AC+  K   KALE++E  K   ++P   T  A+I+A   G ++ K +E+  
Sbjct: 62  IYTYSALISACAKGKQLDKALEIFELCKVNGVEPDGITYGAMISACEKGRRVDKALEIFV 121

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SR 413
            MK  G+  N ITY+ LL ACER    +    +    K DG+ P+ V    +IG C    
Sbjct: 122 QMKKAGMEANAITYNALLAACERAGKADDAREVFDDMKRDGIKPDRVAHAALIGACVGEE 181

Query: 414 RYEKA 418
           RY+ A
Sbjct: 182 RYQAA 186



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 86/177 (48%)

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           AC  AG  ++A E++  +    +       +  IN C ++  W+ A  V+++M  +GV  
Sbjct: 1   ACGRAGAWEKAVELHDHMKAKGMGANTITCSALINACGKSRQWKKALEVFEEMRAEGVEA 60

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    SALI       +++ A EI +  K  G+    I+Y +++ AC   +   KALE++
Sbjct: 61  NIYTYSALISACAKGKQLDKALEIFELCKVNGVEPDGITYGAMISACEKGRRVDKALEIF 120

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
             MK   ++    T NAL+ A     +     EV  DMK  G+ P+ + ++ L+ AC
Sbjct: 121 VQMKKAGMEANAITYNALLAACERAGKADDAREVFDDMKRDGIKPDRVAHAALIGAC 177



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 95/196 (48%), Gaps = 2/196 (1%)

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
           ACG++GA ++A ++   M A+   +  + IT  AL+ AC  + Q  +A EV++ +    +
Sbjct: 1   ACGRAGAWEKAVELHDHMKAK--GMGANTITCSALINACGKSRQWKKALEVFEEMRAEGV 58

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           +     Y+  I+ C++    + A  +++     GV PD +   A+I       +V+ A E
Sbjct: 59  EANIYTYSALISACAKGKQLDKALEIFELCKVNGVEPDGITYGAMISACEKGRRVDKALE 118

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           I  + K  G+    I+Y++L+ AC  A     A E+++ MK   +KP      ALI A  
Sbjct: 119 IFVQMKKAGMEANAITYNALLAACERAGKADDAREVFDDMKRDGIKPDRVAHAALIGACV 178

Query: 343 DGDQLPKTMEVLSDMK 358
             ++    ++    MK
Sbjct: 179 GEERYQAAIDAYKAMK 194



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 63/116 (54%), Gaps = 2/116 (1%)

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
           AC  A  W+KA+EL++HMK+  +     T +ALI A     Q  K +EV  +M++ G+  
Sbjct: 1   ACGRAGAWEKAVELHDHMKAKGMGANTITCSALINACGKSRQWKKALEVFEEMRAEGVEA 60

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKA 418
           N  TYS L+ AC +   ++  L +    K +GV P+ + +  +I  C   RR +KA
Sbjct: 61  NIYTYSALISACAKGKQLDKALEIFELCKVNGVEPDGITYGAMISACEKGRRVDKA 116



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 90/193 (46%), Gaps = 15/193 (7%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTL 92
           R G   + ++L + M+ KG+   + +  +   N C   +  K+A   F+ +        +
Sbjct: 4   RAGAWEKAVELHDHMKAKGM-GANTITCSALINACGKSRQWKKALEVFEEMRAEGVEANI 62

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---- 148
            T++ L+S CA  K  + A ++  L +  G++ D   Y  +I+ C K  +VD   E    
Sbjct: 63  YTYSALISACAKGKQLDKALEIFELCKVNGVEPDGITYGAMISACEKGRRVDKALEIFVQ 122

Query: 149 ----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                ++ + + +NAL+ AC ++G  D A +V  +M  +   + PD +   AL+ AC   
Sbjct: 123 MKKAGMEANAITYNALLAACERAGKADDAREVFDDMKRD--GIKPDRVAHAALIGACVGE 180

Query: 205 GQVDRAREVYKMI 217
            +   A + YK +
Sbjct: 181 ERYQAAIDAYKAM 193


>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
 gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
 gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
          Length = 661

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 157/343 (45%), Gaps = 11/343 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DA 145
            P    F+ L+S  A ++  + A ++L   Q  GL       T LI++   + +V   +A
Sbjct: 218 EPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEA 277

Query: 146 MF------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +F        +KP    +NAL+    + G++  A  VL EM+     V PD  T   L+ 
Sbjct: 278 LFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQ--CGVAPDEATYSLLVD 335

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A   AG+ + AR + K +    +K +  V++  +      G+W+ A +V  +M   GV P
Sbjct: 336 AYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRP 395

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D  F + +ID  G    +  A +     + +GI   ++++++L+ A        +A+EL+
Sbjct: 396 DRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELF 455

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M+        +T N +I  L +  +      +L++MK  GL PN ITY+ L+    R 
Sbjct: 456 DEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRS 515

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
              +  +  +   K DG+ P+  M+  ++   ++R      LN
Sbjct: 516 GRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALN 558



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 148/319 (46%), Gaps = 10/319 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P  +T+++L+     +   E A  +L+ ++  G+K    +++ ++      G+    F  
Sbjct: 325 PDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAV 384

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V+PDR  +N +I   G+   +  A D    M  E   ++PD +T   L+ A 
Sbjct: 385 LREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREE--GIEPDVVTWNTLIDAH 442

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+ DRA E++  + + N       Y I IN   +   WE   ++  +M ++G++P+ 
Sbjct: 443 CKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNI 502

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + L+D  G +G+ + A + ++  K  G+      Y +L+ A +       AL + + 
Sbjct: 503 ITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 562

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M++  L+ +   +N+LI A  +  ++ +   VL  MK  GL P+ ITY+ L+ A  R + 
Sbjct: 563 MRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQ 622

Query: 382 VEVGLMLLSQAKEDGVIPN 400
            E   ++  +    G  P+
Sbjct: 623 FEKVPVIYEEMITSGCAPD 641



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 122/293 (41%), Gaps = 41/293 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDA 145
           P+   F+ +++      + + AF VLR +  +G++ D   Y  +I T  K       +DA
Sbjct: 360 PSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDA 419

Query: 146 M----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD------------- 188
                 E ++PD V +N LI A  + G  DRA ++  EM     P+              
Sbjct: 420 FDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGE 479

Query: 189 --------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                               P+ IT   L+     +G+   A +  + +    +K +P +
Sbjct: 480 EQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTM 539

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   +N  +Q G  + A +V   M   G+    V L++LI+  G   ++  AF +LQ  K
Sbjct: 540 YHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMK 599

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
             G+   +I+Y++LM A    + ++K   +YE M +    P       L +AL
Sbjct: 600 ENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSAL 652


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 102/447 (22%), Positives = 198/447 (44%), Gaps = 38/447 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKS---QKAIKEAFRFFKLVPNP 90
           L   G++ E +   +D+  KG   +D+V +    N +CK+   + A++   +   L+  P
Sbjct: 144 LCLNGKVREALHFHDDVIAKGF-HLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQP 202

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
            +  +N ++      K    A  +   +    +  D   YTTLI  C   G++       
Sbjct: 203 NVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLF 262

Query: 144 -DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
              + +N+KPD   FN L+    + G + +A +VLA M  +   VD + +T  +LM    
Sbjct: 263 NQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQ--GVDSNIVTYNSLMDGYF 320

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              Q ++A  V+  + +  +    + Y+I IN   +T   + A +++ +M  K + P+ V
Sbjct: 321 LVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTV 380

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             ++LID     G++  A++++ E  N+G    +I+YSSL+ A        KA+ L   +
Sbjct: 381 TYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKI 440

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           K   ++P + T   L+  LC   +L     V  D+   G   +   Y++++    ++   
Sbjct: 441 KDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLF 500

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
           +  L L+S+ +++G IP+ V ++ ++                       R   EN     
Sbjct: 501 DEALSLVSKMEDNGCIPDAVTYETLV-----------------------RALFENDKNDK 537

Query: 443 ALMVYREAIVAGTIPTVEVVSKVLGCL 469
           A+ + RE IV G+     + S  + C+
Sbjct: 538 AVKLLREMIVQGSAVGSNISSNSMLCV 564



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 167/382 (43%), Gaps = 47/382 (12%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P L TFN+L++          AF VL  + + G   D    TTLI     +GKV      
Sbjct: 97  PDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHF 156

Query: 144 --DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA------------------- 182
             D + +    D+V +  LI    ++G    A  VL +++                    
Sbjct: 157 HDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCK 216

Query: 183 ---EVHPVD-----------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
               +H  D           PD +T   L+  C   G++  A  ++  +   NIK  P+V
Sbjct: 217 DKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIK--PDV 274

Query: 229 YT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           YT  I ++   + G+ + A +V   M K+GV  + V  ++L+D      +   A  +   
Sbjct: 275 YTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNT 334

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
              +G++  + SYS ++      K   +A+ L++ M S  + P   T N+LI  L    +
Sbjct: 335 MARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGR 394

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +    +++++M + G   + ITYS LL A  +   V+  + L+++ K+ G+ PN+  +  
Sbjct: 395 ISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTI 454

Query: 407 II-GMCSR-RYEKARTLNEHVL 426
           ++ G+C   R + A+ + + +L
Sbjct: 455 LVDGLCKNGRLKDAQAVYQDLL 476



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 150/374 (40%), Gaps = 26/374 (6%)

Query: 170 VDRAFDVLAEMNAEVH---PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           +D   D ++  N  +H   PV P       ++ +         A    K +    I+   
Sbjct: 41  IDNVDDAVSSFNHILHMRNPVQPI-FEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDL 99

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             + I INC    G   FA SV   + K G  PD V ++ LI      GKV  A     +
Sbjct: 100 FTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDD 159

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
              +G  +  +SY +L+         + AL++   +  + ++P V   N +I +LC    
Sbjct: 160 VIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKL 219

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +    ++ S+M    + P+ +TY+ L+  C     ++  + L +Q     + P++  F  
Sbjct: 220 VIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNI 279

Query: 407 II-GMCSR-RYEKART---------LNEHVLSFNSGRP-----QIENKWTSLALMVYREA 450
           ++ G+C     +KAR          ++ +++++NS        + ENK T     V+   
Sbjct: 280 LVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKAT----FVFNTM 335

Query: 451 IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD-- 508
              G  P V+  S ++  L      D    L + +   + A       SLIDG  +Y   
Sbjct: 336 ARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRI 395

Query: 509 PRAFSLLEEAASFG 522
             A+ L+ E  + G
Sbjct: 396 SDAWDLVNEMHNRG 409



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 115/270 (42%), Gaps = 5/270 (1%)

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAG 205
            + ++PD   FN LI      G ++ AF VLA++     H   PD +TI  L+K     G
Sbjct: 92  LKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFH---PDTVTITTLIKGLCLNG 148

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +V  A   +  +           Y   IN   +TG+   A  V   +    V P+ V  +
Sbjct: 149 KVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYN 208

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            +ID       V  A ++  E   + I   +++Y++L+  C      ++A+ L+  M   
Sbjct: 209 TIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLK 268

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            +KP V T N L+  LC   ++ K   VL+ M   G+  N +TY+ L+            
Sbjct: 269 NIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKA 328

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
             + +     GV P++  +  +I G+C  +
Sbjct: 329 TFVFNTMARRGVTPDVQSYSIMINGLCKTK 358


>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
          Length = 661

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 157/343 (45%), Gaps = 11/343 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DA 145
            P    F+ L+S  A ++  + A ++L   Q  GL       T LI++   + +V   +A
Sbjct: 218 EPDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEA 277

Query: 146 MF------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +F        +KP    +NAL+    + G++  A  VL EM+     V PD  T   L+ 
Sbjct: 278 LFLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQ--CGVAPDEATYSLLVD 335

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A   AG+ + AR + K +    +K +  V++  +      G+W+ A +V  +M   GV P
Sbjct: 336 AYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRP 395

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D  F + +ID  G    +  A +     + +GI   ++++++L+ A        +A+EL+
Sbjct: 396 DRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELF 455

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M+        +T N +I  L +  +      +L++MK  GL PN ITY+ L+    R 
Sbjct: 456 DEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRS 515

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
              +  +  +   K DG+ P+  M+  ++   ++R      LN
Sbjct: 516 GRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALN 558



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 148/319 (46%), Gaps = 10/319 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P  +T+++L+     +   E A  +L+ ++  G+K    +++ ++      G+    F  
Sbjct: 325 PDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAV 384

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V+PDR  +N +I   G+   +  A D    M  E   ++PD +T   L+ A 
Sbjct: 385 LREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREE--GIEPDVVTWNTLIDAH 442

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+ DRA E++  + + N       Y I IN   +   WE   ++  +M ++G++P+ 
Sbjct: 443 CKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNI 502

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + L+D  G +G+ + A + ++  K  G+      Y +L+ A +       AL + + 
Sbjct: 503 ITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKA 562

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M++  L+ +   +N+LI A  +  ++ +   VL  MK  GL P+ ITY+ L+ A  R + 
Sbjct: 563 MRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQ 622

Query: 382 VEVGLMLLSQAKEDGVIPN 400
            E   ++  +    G  P+
Sbjct: 623 FEKVPVIYEEMITSGCAPD 641



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 122/294 (41%), Gaps = 41/294 (13%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVD 144
            P+   F+ +++      + + AF VLR +  +G++ D   Y  +I T  K       +D
Sbjct: 359 KPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMD 418

Query: 145 AM----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD------------ 188
           A      E ++PD V +N LI A  + G  DRA ++  EM     P+             
Sbjct: 419 AFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLG 478

Query: 189 ---------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                                P+ IT   L+     +G+   A +  + +    +K +P 
Sbjct: 479 EEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPT 538

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           +Y   +N  +Q G  + A +V   M   G+    V L++LI+  G   ++  AF +LQ  
Sbjct: 539 MYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFM 598

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           K  G+   +I+Y++LM A    + ++K   +YE M +    P       L +AL
Sbjct: 599 KENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSAL 652


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 181/404 (44%), Gaps = 25/404 (6%)

Query: 24  DVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D      +YN +I      GR+ E   +L++ME   L       +     +CK++K ++E
Sbjct: 383 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK-LEE 441

Query: 80  AFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A++ F+       NP   T+  L+         + A+++   + +AG  A+  +YT+LI 
Sbjct: 442 AYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 501

Query: 136 TCAKSGKVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
                G+ +    +F+ +     KPD  + N  +    ++G V++   +  ++ +  +  
Sbjct: 502 NFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRS--YGF 559

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEF 244
            PD  +   L+     AGQ   ARE   + H    +G       Y   ++   ++G    
Sbjct: 560 LPDVRSYSILIHGLTKAGQ---ARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHK 616

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  + ++M +K V P      A++D      +++ A+ + +EAK++GI + ++ YSSL+ 
Sbjct: 617 AYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLID 676

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                    +A  + E M    L P V T N+L+ AL   +++ + +     MK +   P
Sbjct: 677 GFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPP 736

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           NT TYSIL+    R        +     ++ G++PN+V +  +I
Sbjct: 737 NTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 780



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 182/390 (46%), Gaps = 19/390 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----- 87
           +RL +  ++ E   + E   ++G  + D V +    +    +  + EA+R F+ +     
Sbjct: 431 DRLCKARKLEEAYKIFESASQRGC-NPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGH 489

Query: 88  -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA- 145
             NP + T +++ +     +  +G  ++ + +   G K D  L  T +    K+G+V+  
Sbjct: 490 NANPVVYT-SLIRNFFIHGRKEDG-HKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKG 547

Query: 146 --MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
             +FE+++     PD   ++ LI    ++G      ++   M  +   +D       A++
Sbjct: 548 RMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR--AYNAVV 605

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                +G+V +A E+ + + +  ++ T   Y   ++  ++    + A  ++++   KG+ 
Sbjct: 606 DGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIE 665

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
            + V  S+LID  G  G+++ A+ IL+E   +G++  + +++SL+ A   A+   +AL  
Sbjct: 666 LNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVC 725

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++ MK +K  P   T + LI  LC   +  K      DM+  GL PN +TY+ ++    +
Sbjct: 726 FQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAK 785

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             ++     L  + K +G IP+   F  +I
Sbjct: 786 VGNITDAYSLFERFKANGGIPDAASFNALI 815



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/391 (21%), Positives = 161/391 (41%), Gaps = 52/391 (13%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +L   P  S + +L+   A ++  E A ++LR +QE G +    L+TTL+   A+ G+V 
Sbjct: 172 RLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVA 231

Query: 145 ---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
              A+ + VK     PD V++N  I   G++G VD A+    E+ A+   + PD ++  +
Sbjct: 232 DALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQ--GLKPDDVSYTS 289

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++     AG++  A E++  +           Y   I      G +E A  + + + ++G
Sbjct: 290 MIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERG 349

Query: 257 VIPDEVFLSAL----------------------------------IDFAGHAGKVEAAFE 282
            IP  V  +++                                  ID     G+VE A+ 
Sbjct: 350 CIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYR 409

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           IL E ++  +   +++ + ++     A+  ++A +++E        P   T  +LI  L 
Sbjct: 410 ILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLG 469

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VACERKDDVEVGLMLLSQAKEDGVIP 399
              Q+ +   +   M   G   N + Y+ L+       RK+D   G  +  +    G  P
Sbjct: 470 KKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKED---GHKIFKELIRRGCKP 526

Query: 400 NLVMFKCIIGMCSR--RYEKARTLNEHVLSF 428
           +L +    +    +    EK R + E + S+
Sbjct: 527 DLTLLNTYMDCVFKAGEVEKGRMIFEDIRSY 557



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 144/324 (44%), Gaps = 19/324 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           + + G + +   + ED+   G L   + Y      + K+ +A +E    F  +     + 
Sbjct: 538 VFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQA-RETSNIFHAMKQQGFAL 596

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MF 147
               +N ++     S     A+++L  ++E  ++     Y  ++   AK  ++D    +F
Sbjct: 597 DARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLF 656

Query: 148 ENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           E  K      + V++++LI   G+ G +D A+ +L EM  +   + P+  T  +L+ A  
Sbjct: 657 EEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK--GLTPNVYTWNSLLDALV 714

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            A +++ A   ++ + +         Y+I IN   +   +  A   + DM K+G++P+ V
Sbjct: 715 KAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVV 774

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + +I      G +  A+ + +  K  G      S+++L+   SNA    +A +++E  
Sbjct: 775 TYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQVFEET 834

Query: 323 K----SIKLKPTVSTMNALITALC 342
           +     I +K  +S ++AL  + C
Sbjct: 835 RLRGCRINIKSCISLLDALNKSEC 858



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/412 (21%), Positives = 165/412 (40%), Gaps = 58/412 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFKLVPNPT 91
           L ++G++ E   L E M   G      VY +    FF   + +   K      +    P 
Sbjct: 468 LGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPD 527

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDAMFE 148
           L+  N  M     + + E    +   ++  G   D + Y+ LI    K+G+      +F 
Sbjct: 528 LTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFH 587

Query: 149 NVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            +K      D   +NA++    +SG V +A+++L EM  +   V P   T GA++   A 
Sbjct: 588 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC--VQPTVATYGAIVDGLA- 644

Query: 204 AGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             ++DR  E Y +  +   KG      +Y+  I+   + G  + A  + ++M KKG+ P+
Sbjct: 645 --KIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 702

Query: 261 EVFLSALIDFAGHA-----------------------------------GKVEAAFEILQ 285
               ++L+D    A                                    K   AF   Q
Sbjct: 703 VYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQ 762

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           + + QG+   +++Y++++   +   N   A  L+E  K+    P  ++ NALI  + + +
Sbjct: 763 DMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNAN 822

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE----VGLMLLSQAK 393
           +  +  +V  + +  G   N  +   LL A  + + +E    VG +L   AK
Sbjct: 823 RAMEAYQVFEETRLRGCRINIKSCISLLDALNKSECLEQAAIVGAVLREIAK 874



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 87/212 (41%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L  A   A ++D A     ++ +   +     YT+ I   ++    E A  +   M + G
Sbjct: 150 LAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVG 209

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
                   + L+      G+V  A  ++ E K   +   I+ Y+  +     A N   A 
Sbjct: 210 YEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAW 269

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           + +  +K+  LKP   +  ++I  LC   +L +  E+ + M++    P    Y+ +++  
Sbjct: 270 KFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGY 329

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                 E    LL + +E G IP++V F  I+
Sbjct: 330 GSAGRFEDAYKLLERLRERGCIPSVVSFNSIL 361


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1114

 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 143/293 (48%), Gaps = 10/293 (3%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
            P L T+N+L+     +   E A  V   V+  G   D   Y  L+    KSGK+D +FE 
Sbjct: 785  PKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEI 844

Query: 150  VK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             K        P+ +  N +I+   ++G VD A D+  ++ ++     P   T G L+   
Sbjct: 845  YKEMSAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSD-RDFSPTACTYGPLIDGL 903

Query: 202  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            + +G++  A+++++ +  Y  +    +Y I IN   + G+ + AC+++  M K+GV PD 
Sbjct: 904  SKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDL 963

Query: 262  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
               S L+D     G+V+      +E K  G++  ++ Y+ ++         ++AL L+  
Sbjct: 964  KTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNE 1023

Query: 322  M-KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            M KS  + P + T N+LI  L     + +  ++ ++++  GL PN  T++ L+
Sbjct: 1024 MKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALI 1076



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 92/422 (21%), Positives = 179/422 (42%), Gaps = 23/422 (5%)

Query: 18  HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           ++N  H      +    L   G+I E +  + D+ +K ++  D   +   F     +  +
Sbjct: 113 NSNLVHTTETCNYMLEALRVDGKIEE-MAYVFDLMQKRIIKRDTNTYLTIFKCLSVKGGL 171

Query: 78  KEA------FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           ++A       R F  V N    ++N L+ +   S+    A +V R +   G +   + Y+
Sbjct: 172 RQAPFALRKMREFGFVLNAY--SYNGLIHLLLKSRFCTEAMEVYRRMILDGFRPSLQTYS 229

Query: 132 TLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           +L+    K   ++++           +KP+   F   I   G++G ++ A+++L  M+ E
Sbjct: 230 SLMVGLGKRRDIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDE 289

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
                PD +T   L+ A   A ++D A+EV+  +     K     Y   ++  S   D +
Sbjct: 290 --GCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRDLD 347

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
                + +M K G +PD V  + L+D    AG    AF  L   ++QGI   + +Y++L+
Sbjct: 348 SVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLI 407

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                      ALE++++M+S+ +KPT  T    I            +E    MK+ G+ 
Sbjct: 408 CGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIA 467

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 423
           PN +  +  L +  +         +    K+ G++P+ V +     M  + Y K   ++E
Sbjct: 468 PNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYN----MMMKCYSKVGEIDE 523

Query: 424 HV 425
            +
Sbjct: 524 AI 525



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 147/321 (45%), Gaps = 11/321 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P + TF +L+     + +   AF  L ++++ G+  +   Y TLI    +  ++D    +
Sbjct: 363 PDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEI 422

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F+N     VKP    +   I   G+SG    A +   +M  +   + P+ +   A + + 
Sbjct: 423 FDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTK--GIAPNIVACNASLYSL 480

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A AG+   A++++  +    +      Y + + C S+ G+ + A  +  +M +    PD 
Sbjct: 481 AKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDV 540

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           + +++LI+    A +V+ A+++    K   +   +++Y++L+         Q+A+EL+E 
Sbjct: 541 IVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEG 600

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M      P   T N L   LC  D++   +++L  M  +G  P+  TY+ ++    +   
Sbjct: 601 MVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQ 660

Query: 382 VEVGLMLLSQAKEDGVIPNLV 402
           V+  +    Q K+  V P+ V
Sbjct: 661 VKEAMCFFHQMKK-LVYPDFV 680



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 97/436 (22%), Positives = 182/436 (41%), Gaps = 62/436 (14%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC----KSQKAIKE 79
            L +Y+ L+    ++  I   + LL++ME  GL     VY    F +C         I E
Sbjct: 224 SLQTYSSLMVGLGKRRDIESVMGLLKEMETLGL--KPNVYT---FTICIRVLGRAGKINE 278

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A+   K + +    P + T+ +L+    +++  + A +V   ++    K D   Y TL+ 
Sbjct: 279 AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLD 338

Query: 136 TCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
             + +  +D++ +           PD V F  L+ A  ++G    AF  L  M  +   +
Sbjct: 339 RFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQ--GI 396

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P+  T   L+       ++D A E++  +    +K T   Y + I+   ++GD   A  
Sbjct: 397 LPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALE 456

Query: 248 VYDDMTKKGV-----------------------------------IPDEVFLSALIDFAG 272
            ++ M  KG+                                   +PD V  + ++    
Sbjct: 457 TFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYS 516

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
             G+++ A ++L E         +I  +SL+     A    +A +++  MK +KLKPTV 
Sbjct: 517 KVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVV 576

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N L+  L    ++ + +E+   M   G  PNTIT++ L     + D+V + L +L + 
Sbjct: 577 TYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM 636

Query: 393 KEDGVIPNLVMFKCII 408
            + G +P++  +  II
Sbjct: 637 MDMGCVPDVFTYNTII 652



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 133/326 (40%), Gaps = 63/326 (19%)

Query: 152  PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
            PD   +N L+ A G+SG +D  F++  EM+A  H  +P+ IT   ++     AG VD A 
Sbjct: 820  PDVATYNFLLDAYGKSGKIDELFEIYKEMSA--HECEPNTITHNIVISGLVKAGNVDDAL 877

Query: 212  EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            ++Y                                  YD M+ +   P       LID  
Sbjct: 878  DLY----------------------------------YDLMSDRDFSPTACTYGPLIDGL 903

Query: 272  GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              +G++  A ++ +   + G       Y+ L+     A     A  L++ M    ++P +
Sbjct: 904  SKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDL 963

Query: 332  STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
             T + L+  LC   ++ + +    ++K  GL P+ + Y++++    +   +E  L+L ++
Sbjct: 964  KTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNE 1023

Query: 392  AKED-GVIPNLVMFKCII---GMCSRRYEKARTLNE--------HVLSFN--------SG 431
             K+  G+ P+L  +  +I   G+     E  +  NE        +V +FN        SG
Sbjct: 1024 MKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSG 1083

Query: 432  RPQIENKWTSLALMVYREAIVAGTIP 457
            +P+        A  VY+  +  G  P
Sbjct: 1084 KPE-------HAYAVYQTMVTGGFSP 1102



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/342 (18%), Positives = 141/342 (41%), Gaps = 47/342 (13%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            LH+YN LI    R  R+ + +++ ++ME  G+                           
Sbjct: 399 NLHTYNTLICGLLRVHRLDDALEIFDNMESLGV--------------------------- 431

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK- 142
                 PT  T+ + +     S DS  A +    ++  G+  +       + + AK+G+ 
Sbjct: 432 -----KPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRD 486

Query: 143 --VDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                +F  +K     PD V +N ++    + G +D A  +L+EM       +PD I + 
Sbjct: 487 REAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENC--CEPDVIVVN 544

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+     A +VD A +++  + +  +K T   Y   +    + G  + A  +++ M +K
Sbjct: 545 SLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQK 604

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  P+ +  + L D      +V  A ++L +  + G    + +Y++++         ++A
Sbjct: 605 GCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEA 664

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +  +  MK + + P   T+  L+  +     +    +++++ 
Sbjct: 665 MCFFHQMKKL-VYPDFVTLCTLLPGVVKAGLIEDAYKIIANF 705



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 177/426 (41%), Gaps = 62/426 (14%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS--QKAIKEAFRFFK---LVPNPT 91
           + G     ++  E M+ KG+       +A  +++ K+   +  K+ F   K   LVP+  
Sbjct: 447 KSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSV 506

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
             T+NM+M   +   + + A ++L  + E   + D  +  +LI T  K+ +VD  ++   
Sbjct: 507 --TYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFM 564

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 +KP  V +N L+   G++G +  A ++   M  +  P  P+ IT   L      
Sbjct: 565 RMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCP--PNTITFNTLFDCLCK 622

Query: 204 AGQVDRA-REVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             +V  A + ++KM+   ++   P+V+T    I    + G  + A   +  M KK V PD
Sbjct: 623 NDEVTLALKMLFKMM---DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM-KKLVYPD 678

Query: 261 EVFLSALIDFAGHAGKVEAAFEI----LQEAKNQGISV-------------GI---ISYS 300
            V L  L+     AG +E A++I    L    +Q  ++             GI   +S+S
Sbjct: 679 FVTLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPANLFWEDLMGSILAEAGIDNAVSFS 738

Query: 301 SLM---GACSNA--------------KNWQKALELYEHM-KSIKLKPTVSTMNALITALC 342
             +   G C +                N   A  L+E   K + ++P + T N LI  L 
Sbjct: 739 ERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLL 798

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
           + D +    +V   +K+ G  P+  TY+ LL A  +   ++    +  +       PN +
Sbjct: 799 EADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTI 858

Query: 403 MFKCII 408
               +I
Sbjct: 859 THNIVI 864



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 166/398 (41%), Gaps = 51/398 (12%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN +++     G I E I LL +M  +   + D +      N       + EA++ F  
Sbjct: 507 TYNMMMKCYSKVGEIDEAIKLLSEM-VENCCEPDVIVVNSLINTLYKADRVDEAWKMFMR 565

Query: 85  --KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             ++   PT+ T+N L++    +   + A ++   + + G   +   + TL     K+ +
Sbjct: 566 MKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDE 625

Query: 143 V----DAMFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           V      +F+ +     PD   +N +I    ++G V  A     +M   V+P   D +T+
Sbjct: 626 VTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKLVYP---DFVTL 682

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--WE--------- 243
             L+     AG ++ A   YK+I  +       +Y+    C  Q  +  WE         
Sbjct: 683 CTLLPGVVKAGLIEDA---YKIIANF-------LYS----CADQPANLFWEDLMGSILAE 728

Query: 244 ----FACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGII 297
                A S  + +   G+  D +  L  +I ++        A  + ++  K+ G+   + 
Sbjct: 729 AGIDNAVSFSERLVANGICRDGDSILVPIIRYSFKHNNASGARMLFEKFTKDLGVQPKLP 788

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +Y+ L+G    A   + A +++  +K+    P V+T N L+ A     ++ +  E+  +M
Sbjct: 789 TYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEM 848

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            +    PNTIT++I++    +  +V+  L L      D
Sbjct: 849 SAHECEPNTITHNIVISGLVKAGNVDDALDLYYDLMSD 886


>gi|298705454|emb|CBJ28729.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 745

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 168/387 (43%), Gaps = 18/387 (4%)

Query: 39  GRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKL-VPNPTLSTFN 96
           G+  E   LL+ M +  L +   + Y+A     C++Q+++        + V +   S   
Sbjct: 349 GQWEEATSLLQRMRQDSLAVVTSREYNAAIMACCRAQQSVAALTLLGDMSVESEHCSADE 408

Query: 97  MLMSVCASSKDSEGAFQVL-----RLVQEAGLKADCKLYTTLITTCAKSGK--------V 143
               +   +   EG ++ +      L +EAGL      Y  +I   AK+G+         
Sbjct: 409 TSYVLVMRAFGREGRWRTVIDLMGSLKEEAGLVPTVSSYNVVIEALAKAGEWMKALEMLA 468

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           +   E V+P    ++  + AC +SG  +R   +LA+M  E   + PD       M AC+ 
Sbjct: 469 EMKQERVRPTEFTYSRCMAACEKSGEWERTLLLLADMK-EQEDLVPDSYIFSTAMVACSK 527

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           AG++D    + + + + +    P +  Y IAI  C++  DW       D M ++ + P+E
Sbjct: 528 AGRLDDVLGILQEMREMSATSGPNLVLYNIAIGSCARARDWPRMLEEMDRMRREDIEPEE 587

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              +A +D  G  G +  A E+L   +  GI  G+++Y  ++ A   A     A  L + 
Sbjct: 588 STFAAPLDTCGRTGNLPMALELLDRMREDGIKPGVVTYGYVVAAACRAGERTSAALLLDE 647

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M++    P   T      A  +G+     +++L   +  GL P+ +  S  + AC    +
Sbjct: 648 MEAAGHPPNERTYGVAALACREGNNADAAIDLLRRRQMQGLPPDALILSCAVQACSNAGN 707

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ++ GL L+++ K  G  P+   +  +I
Sbjct: 708 MQRGLELITEMKSAGFSPDRAFYHSVI 734



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 160/342 (46%), Gaps = 20/342 (5%)

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMFENV 150
           M   A+++D+ GA  +L   Q+ GL     L T  +  C+ +G+         D   E +
Sbjct: 236 MKTQAAARDAWGALALLD--QDDGLPRSVMLRTGAMQACSGAGEWRAALSILEDMQAEGL 293

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG--ALMKACANAGQVD 208
           +P+   + A + AC + G +D A ++L  +    HP D   +T      +KAC N GQ +
Sbjct: 294 RPNGAAYVAAMEACARGGVMDLALELLDRV-LMFHPRDERTVTAAFHGAIKACGNGGQWE 352

Query: 209 RAREVYKMIHKYNIKG-TPEVYTIAINCCSQTGDWEFACSVYDDMT--KKGVIPDEVFLS 265
            A  + + + + ++   T   Y  AI  C +      A ++  DM+   +    DE    
Sbjct: 353 EATSLLQRMRQDSLAVVTSREYNAAIMACCRAQQSVAALTLLGDMSVESEHCSADETSYV 412

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
            ++   G  G+     +++   K + G+   + SY+ ++ A + A  W KALE+   MK 
Sbjct: 413 LVMRAFGREGRWRTVIDLMGSLKEEAGLVPTVSSYNVVIEALAKAGEWMKALEMLAEMKQ 472

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSILLVACERKDDVE 383
            +++PT  T +  + A     +  +T+ +L+DMK    L P++  +S  +VAC +   ++
Sbjct: 473 ERVRPTEFTYSRCMAACEKSGEWERTLLLLADMKEQEDLVPDSYIFSTAMVACSKAGRLD 532

Query: 384 VGLMLLSQAKEDGVI--PNLVMFKCIIGMCSRRYEKARTLNE 423
             L +L + +E      PNLV++   IG C+R  +  R L E
Sbjct: 533 DVLGILQEMREMSATSGPNLVLYNIAIGSCARARDWPRMLEE 574



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 137/320 (42%), Gaps = 17/320 (5%)

Query: 37  RQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPTL 92
           R+GR    IDL+  + E  GL+     Y+     + K+    KA++      +    PT 
Sbjct: 420 REGRWRTVIDLMGSLKEEAGLVPTVSSYNVVIEALAKAGEWMKALEMLAEMKQERVRPTE 479

Query: 93  STFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVD------- 144
            T++  M+ C  S + E    +L  + ++  L  D  +++T +  C+K+G++D       
Sbjct: 480 FTYSRCMAACEKSGEWERTLLLLADMKEQEDLVPDSYIFSTAMVACSKAGRLDDVLGILQ 539

Query: 145 ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               M     P+ V++N  I +C ++    R  + +  M  E   ++P+  T  A +  C
Sbjct: 540 EMREMSATSGPNLVLYNIAIGSCARARDWPRMLEEMDRMRRE--DIEPEESTFAAPLDTC 597

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G +  A E+   + +  IK     Y   +    + G+   A  + D+M   G  P+E
Sbjct: 598 GRTGNLPMALELLDRMREDGIKPGVVTYGYVVAAACRAGERTSAALLLDEMEAAGHPPNE 657

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
                           +AA ++L+  + QG+    +  S  + ACSNA N Q+ LEL   
Sbjct: 658 RTYGVAALACREGNNADAAIDLLRRRQMQGLPPDALILSCAVQACSNAGNMQRGLELITE 717

Query: 322 MKSIKLKPTVSTMNALITAL 341
           MKS    P  +  +++I  +
Sbjct: 718 MKSAGFSPDRAFYHSVIAGI 737


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 200/422 (47%), Gaps = 22/422 (5%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           +V    +++N LI    ++GRI E   +L  M ++G       Y+A     C S++ + E
Sbjct: 260 NVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYC-SRENVHE 318

Query: 80  AFRFF-KLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A   F ++V     P +  +N+L+     +K  + A  + + +    L      Y +LI 
Sbjct: 319 ARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLID 378

Query: 136 TCAKSGKV-------DAMFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
               SG++       D M  + +P D V +N LI A  + G +  A  VL  M  +   V
Sbjct: 379 GLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKK--GV 436

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P+ +T  A+M        V+ A++++  + K  ++     Y + IN   +T   + A  
Sbjct: 437 KPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIV 496

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           ++ +M  K +IPD    ++LID   + G++    E+L E  + G S  +I+Y+ L+ A  
Sbjct: 497 LFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFC 556

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
             + + KA+ L+  +    + P   T +A++  LC G++L    + L  +   G  PN  
Sbjct: 557 KTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPNVQ 615

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNEHV 425
           TY+IL+ A  +       ++LLS+ +++   P+ + F+ IIG+  +R E  KA  L E +
Sbjct: 616 TYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQRNETDKAEKLREEM 675

Query: 426 LS 427
           ++
Sbjct: 676 IA 677



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 117/528 (22%), Positives = 230/528 (43%), Gaps = 52/528 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           ++R G     I L   ++ KG+      +     N    Q     AF     +      P
Sbjct: 65  IVRMGHYPTAISLFTQLQSKGISPSIATF-TILINCYFHQSHTAFAFSLLATILKSGYQP 123

Query: 91  TLSTFNMLMS-VCASSKDSEGAFQVLRLVQE---AGLKADCKLYTTLITTCAKSGKVDAM 146
            L TFN +++  C +       F+ L   Q     G   D   Y TLI   +K+G++ A 
Sbjct: 124 NLVTFNTIINGFCINGM----IFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAA 179

Query: 147 FE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                     +V+P+ V+++ALI    + G V  A  + +++      +  D +T  +L+
Sbjct: 180 LHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGER--GILLDAVTYNSLI 237

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
             C + G+     ++   + + N+      + I I+   + G    A  V   M+K+G  
Sbjct: 238 DGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEK 297

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD V  +AL++       V  A E+      +G+   +++Y+ L+      K   +A+ L
Sbjct: 298 PDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVL 357

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++ + +  L PT+++ N+LI  LC+  ++    ++L +M      P+ +TY+IL+ A  +
Sbjct: 358 FKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCK 417

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-----------RYEKARTLNEHVL 426
           +  +   L +L    + GV PN+V +  ++ G C R           R  K+  L   +L
Sbjct: 418 EGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS-GLEPDIL 476

Query: 427 SFN---SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRE 479
           ++N   +G  + E      A+++++E      IP +   + ++  L    ++P+  ++ +
Sbjct: 477 NYNVLINGYCKTE--MVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLD 534

Query: 480 RLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVP 525
            + ++ G S D +  +    L+D F +  P  +A SL  +    GI P
Sbjct: 535 EMCDS-GQSPDVITYN---ILLDAFCKTQPFDKAISLFRQIVE-GIWP 577



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 169/389 (43%), Gaps = 43/389 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L + G+I   + LL++ME+  +     +Y A    +CK    + +A            
Sbjct: 168 NGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKD-GFVSDA------------ 214

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--------VD 144
                 + +C+              + E G+  D   Y +LI  C   G+          
Sbjct: 215 ------LGLCSQ-------------IGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTK 255

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
            + ENV PD   FN LI A  + G +  A  VLA M+       PD +T  ALM+   + 
Sbjct: 256 MVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGE--KPDIVTYNALMEGYCSR 313

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
             V  ARE++  + K  ++     Y + I+   +T   + A  ++ ++  K ++P     
Sbjct: 314 ENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASY 373

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++LID   ++G++    ++L E         +++Y+ L+ A        +AL +   M  
Sbjct: 374 NSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMK 433

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             +KP + T NA++   C  + +    ++ + M   GL P+ + Y++L+    + + V+ 
Sbjct: 434 KGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDE 493

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
            ++L  + +   +IP++  +  +I G+C+
Sbjct: 494 AIVLFKEMRHKNLIPDIASYNSLIDGLCN 522



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 113/278 (40%), Gaps = 8/278 (2%)

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           VD A      M   V P  P  +    L+ A    G    A  ++  +    I  +   +
Sbjct: 36  VDDAVTCFNRM-VRVFPPPPTSV-FDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATF 93

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           TI INC        FA S+   + K G  P+ V  + +I+     G +  A +  Q    
Sbjct: 94  TILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLA 153

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           QG      +Y +L+   S     + AL L + M+   ++P +   +ALI  LC    +  
Sbjct: 154 QGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSD 213

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
            + + S +   G+  + +TY+ L+  C      +    LL++   + V P+   F  +I 
Sbjct: 214 ALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILID 273

Query: 409 GMCSRRYEKARTLN-EHVLSFNSGRPQIENKWTSLALM 445
            +C    ++ R L  + VL+  S R +  +  T  ALM
Sbjct: 274 ALC----KEGRILEAQGVLAMMSKRGEKPDIVTYNALM 307


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 180/393 (45%), Gaps = 22/393 (5%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G+  E + +LE M  +GL      Y +    +C    A+ E   F  L
Sbjct: 244 TYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLC----ALSEMHSFLDL 299

Query: 87  VPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +    LS     FN+  S  A     + A  +   +++ GL  +   Y  LI    K G+
Sbjct: 300 MVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGR 359

Query: 143 VD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           VD         + E V P+ VVFN+L+         +RA +++ EM  +   + P+ +  
Sbjct: 360 VDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQ--GICPNAVFF 417

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+    N G+V   R +  ++    ++     YT  I+     G  + A  V+D M  
Sbjct: 418 NTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVS 477

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G+ P EV  + L+     A +++ A+ + +E   +G++ G+++Y++++      K + +
Sbjct: 478 IGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSE 537

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ELY +M +   K  + T N ++  LC  + + +  ++   + S GL  N IT++I++ 
Sbjct: 538 AKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIG 597

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
           A  +    E  + L +    +G++PN+V ++ +
Sbjct: 598 ALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLV 630



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 163/372 (43%), Gaps = 49/372 (13%)

Query: 70  VCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           +CK+Q   +    F +++ N   P   T+N L+    S    +   Q+L  +   GLK D
Sbjct: 217 LCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPD 276

Query: 127 CKLYTTLIT-TCAKS---GKVDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           C  Y +L+   CA S     +D M EN + PD  +FN   +A  + G +D+A D+  +M 
Sbjct: 277 CYTYGSLLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMR 336

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
              H + P+ +  GAL+ A    G+VD A EV     K+N                    
Sbjct: 337 Q--HGLSPNVVNYGALIDALCKLGRVDDA-EV-----KFN-------------------- 368

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
                     M  +GV P+ V  ++L+       K E A E++ E  +QGI    + +++
Sbjct: 369 ---------QMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNT 419

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+    N     +   L + M+ + ++P   +   LI+  C   +  +  +V   M S+G
Sbjct: 420 LICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIG 479

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKAR 419
           L P  +TY+ LL        ++    L  +    GV P +V +  I+     ++R+ +A+
Sbjct: 480 LSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAK 539

Query: 420 TLNEHVLSFNSG 431
            L  +++  NSG
Sbjct: 540 ELYLNMI--NSG 549



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 215 KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           +M+ + +IK  P    Y+I I C  + G  + + + +  + K G   +++ ++ L+    
Sbjct: 85  RMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLC 144

Query: 273 HAGKVEAAFEI-LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK--- 328
              +V  A ++ LQ     G +   +SYS L+    N    ++ALEL   M +   +   
Sbjct: 145 DGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCP 204

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           P V T   +I  LC      +   V   M   G+ PN  TY+ L+
Sbjct: 205 PNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLI 249



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 7/143 (4%)

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV-LSD 356
           +YS L+G        + +   +  +     +     +N L+  LCDG ++ + M+V L  
Sbjct: 100 TYSILIGCLCRMGRLKHSFATFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAMDVLLQR 159

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED---GVIPNLVMFKCII-GMC- 411
           M  LG  P+T++YSILL     ++  E  L LL     D      PN+V +  +I G+C 
Sbjct: 160 MPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCK 219

Query: 412 SRRYEKARTLNEHVLSFNSGRPQ 434
           ++ +++A  + + ++  N  +P 
Sbjct: 220 AQLFDRAEGVFQQMID-NGVKPN 241



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 67/307 (21%), Positives = 123/307 (40%), Gaps = 24/307 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L   GR+ E   L++ ME  G+      Y       C + +  +    F  +V    +PT
Sbjct: 424 LCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPT 483

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT--------TCAKSGKV 143
             T+N L+    S+   + A+ + R +   G+      Y T++         + AK   +
Sbjct: 484 EVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYL 543

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKAC 201
           + +    K D   +N ++    +S  VD AF +   + ++   ++     I IGAL+K  
Sbjct: 544 NMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKG- 602

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+ + A +++  I    +      Y +      + G  E   S++  M K G  P+ 
Sbjct: 603 ---GRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNS 659

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
             L+AL+    H G +  A   L +   +  SV   S +SL+ +   +  +Q       H
Sbjct: 660 QMLNALVRRLLHRGDISRAGAYLSKLDERNFSVE-ASTTSLLISIFTSDEYQ------HH 712

Query: 322 MKSIKLK 328
            KS+  K
Sbjct: 713 AKSLPEK 719


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 175/411 (42%), Gaps = 26/411 (6%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++ L  ++R  R G   E + LLE M RKG  + D +   +      + + + +A R  +
Sbjct: 86  TQMLKIFHRSCRSGNYIESLHLLETMVRKGY-NPDVILCTKLIKGFFTLRNVPKAVRVME 144

Query: 86  LVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++     P +  +N L++        + A +VL  ++      D   Y  +I +    GK
Sbjct: 145 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 204

Query: 143 VDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +D         + +N +P  + +  LI A    G VD A  +L EM +    + PD  T 
Sbjct: 205 LDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLS--RGLKPDMFTY 262

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDD 251
             +++     G VDRA   ++MI    +KG  P+V  Y I +      G WE    +   
Sbjct: 263 NTIIRGMCKEGMVDRA---FEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTK 319

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M  +   P+ V  S LI      GK+E A  +L+  K +G++    SY  L+ A      
Sbjct: 320 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 379

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
              A+E  E M S    P +   N ++  LC   +  + +E+   +  +G  PN+ +Y+ 
Sbjct: 380 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 439

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII------GMCSRRYE 416
           +  A     D    L ++ +   +G+ P+ + +  +I      GM  + +E
Sbjct: 440 MFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFE 490



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 182/417 (43%), Gaps = 28/417 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRF 83
           +YN LI    +  RI +   +L+ M  K        Y+    ++C   K   A+K   + 
Sbjct: 156 AYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQL 215

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 PT+ T+ +L+         + A ++L  +   GLK D   Y T+I    K G V
Sbjct: 216 LSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMV 275

Query: 144 DAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D  FE ++        PD + +N L+ A    G  +    ++ +M +E    DP+ +T  
Sbjct: 276 DRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE--KCDPNVVTYS 333

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT----IAINCCSQTGDWEFACSVYDD 251
            L+      G+++ A  + K++ +  +  TP+ Y+    IA  C  + G  + A    + 
Sbjct: 334 ILITTLCRDGKIEEAMNLLKLMKEKGL--TPDAYSYDPLIAAFC--REGRLDVAIEFLET 389

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M   G +PD V  + ++      GK + A EI  +    G S    SY+++  A  ++ +
Sbjct: 390 MISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGD 449

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +AL +   M S  + P   T N++I+ LC    + K  E+L DM+S    P+ +TY+I
Sbjct: 450 KIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNI 509

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI---IGMCSRRYEKARTLNEHV 425
           +L+   +   +E  + +L     +G  PN   +  +   IG    R E     N+ V
Sbjct: 510 VLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 566


>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 174/400 (43%), Gaps = 19/400 (4%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFF 84
           H+YN +I     +G   +  +L  +M  +G    D V Y A     CK  +     +   
Sbjct: 191 HAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLN 250

Query: 85  KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           ++  N   PT   + MLM++     +  GA  +   ++    + D   YT LI    K+G
Sbjct: 251 EMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAG 310

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++D  +        E  +PD V+ N +I   G++G +D A  +  EM  E     P  +T
Sbjct: 311 RLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEM--ETLRCIPSVVT 368

Query: 194 IGALMKACANA-GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              ++KA   +  +V      ++ +    I  +P  Y+I I+   +T   E A  + ++M
Sbjct: 369 YNTIIKALFESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEM 428

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            +KG  P      +LID  G A + + A E+ QE K    S     Y+ ++     A   
Sbjct: 429 DEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRL 488

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
             A++L++ M  +   P V   NAL++ L     L + +  +  M+  G  P+  +Y+I+
Sbjct: 489 DDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNII 548

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           L A  +    +  + +L   K+  + P+ V +  ++G  S
Sbjct: 549 LNALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALS 588



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/363 (20%), Positives = 151/363 (41%), Gaps = 47/363 (12%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LIR     GR+ E  +   +M R+G    D V      N       + +A + F+ 
Sbjct: 298 TYTELIRGLGKAGRLDEAYNFFHEMRREGCRP-DTVLMNNMINFLGKAGRLDDAIKLFEE 356

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P++ T+N ++     SK                               ++  +
Sbjct: 357 METLRCIPSVVTYNTIIKALFESK-------------------------------SRVSE 385

Query: 143 VDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
           + + FE +K     P    ++ LI    ++   ++A  +L EM+ +  P  P      +L
Sbjct: 386 ISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFP--PCPAAYCSL 443

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           + A   A + D A E+++ + +     +  VY + I    + G  + A  ++D+M + G 
Sbjct: 444 IDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGC 503

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P+    +AL+     AG ++ A   ++  ++ G    I SY+ ++ A +      +A+ 
Sbjct: 504 TPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMG 563

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           +  +MK   +KP   + N ++ AL       +  +++ +M ++G   + ITYS +L A  
Sbjct: 564 MLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLITYSSILEAIG 623

Query: 378 RKD 380
           + D
Sbjct: 624 KVD 626



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 137/326 (42%), Gaps = 49/326 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + GR+ + I L E+ME    +     Y+     + +S+  + E   +F+ +     
Sbjct: 339 NFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERMKGSGI 398

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---A 145
           +P+  T+++L+     +  +E A  +L  + E G       Y +LI    K+ + D    
Sbjct: 399 SPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANE 458

Query: 146 MFENVKPD-----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +F+ +K +       V+  +I   G++G +D A D+  EMN       P+     ALM  
Sbjct: 459 LFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNR--LGCTPNVYAYNALMSG 516

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A AG +D A    + +  +        Y I +N  ++TG  + A  +  +M +  + PD
Sbjct: 517 LARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNMKQSAIKPD 576

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V                                   SY++++GA S+A  +++A +L +
Sbjct: 577 AV-----------------------------------SYNTVLGALSHAGMFEEAAKLMK 601

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQ 346
            M +I     + T ++++ A+   DQ
Sbjct: 602 EMNAIGFDYDLITYSSILEAIGKVDQ 627



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 150/374 (40%), Gaps = 35/374 (9%)

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
           AE   EV  +  DH  +  +MK   + G   + +       K N +     Y   I C  
Sbjct: 73  AEKALEVLMMKVDHWLVREVMKT--DVGVSVKMQFFRWAARKRNYEHDTSTYMALIRCLE 130

Query: 238 QTGDWEFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
               +     +  +M +  V +   + LS +I   G+A  +  A  I  + K +      
Sbjct: 131 VVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKARKCQPTA 190

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLS 355
            +Y+S++    +   ++K  ELY  M +  +  P   T +ALI+A C   +    + +L+
Sbjct: 191 HAYNSMIIMLMHEGEYEKVHELYNEMSNEGQCFPDTVTYSALISAFCKLGRQDSAIWLLN 250

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 415
           +MK  G+ P    Y++L+    + D+V   L L  + +     P++  +  +I    R  
Sbjct: 251 EMKDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELI----RGL 306

Query: 416 EKARTLNE-----HVLSFNSGRPQ---IENKWTSL--------ALMVYREAIVAGTIPTV 459
            KA  L+E     H +     RP    + N    L        A+ ++ E      IP+V
Sbjct: 307 GKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSV 366

Query: 460 EVVSKVLGCL-----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAF 512
              + ++  L     ++   +   ER+ +  G+S      S    LIDGF + +   +A 
Sbjct: 367 VTYNTIIKALFESKSRVSEISSWFERM-KGSGISPSPFTYS---ILIDGFCKTNRTEKAM 422

Query: 513 SLLEEAASFGIVPC 526
            LLEE    G  PC
Sbjct: 423 MLLEEMDEKGFPPC 436


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 173/358 (48%), Gaps = 20/358 (5%)

Query: 81  FRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            R   L P+P       ++ +LM    + + ++ A  +LR ++ AG++AD   Y TLI  
Sbjct: 100 LRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRG 159

Query: 137 CAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
              + +VD   E         ++P+ VV+++L+    +SG  +    V  EM+ +   ++
Sbjct: 160 LCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEK--GIE 217

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD +    L+ +    G+  +A  V  M+ +  ++     Y + INC  + G  + A  V
Sbjct: 218 PDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGV 277

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE---AKNQGISVGIISYSSLMGA 305
              M++KGV PD V  + LI       +++ A  +L+E    KN  +   +++++S++  
Sbjct: 278 LKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNI-VKPNVVTFNSVIQG 336

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
             +    ++A ++   M+       + T N LI  L    ++ K ME++ +M SLGL P+
Sbjct: 337 LCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPD 396

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF-KCIIGMCSR-RYEKARTL 421
           + TYSIL+    +   V+    LLS  ++ G+ P L  +   ++ MC +   E+AR L
Sbjct: 397 SFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNL 454



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 172/408 (42%), Gaps = 20/408 (4%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LIR       + + ++L+ +M   G+     VY +     CKS +       F ++
Sbjct: 152 TYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEM 211

Query: 87  V-----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
                 P+  + T  ++ S+C   K ++ A  V+ ++   GL+ +   Y  LI    K G
Sbjct: 212 SEKGIEPDVVMYT-GLIDSLCKVGK-AKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEG 269

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            V            + V PD V +N LI        +D A  +L EM    + V P+ +T
Sbjct: 270 SVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVT 329

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             ++++   + G++ +A +V  M+ +         Y + I    +      A  + D+MT
Sbjct: 330 FNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMT 389

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
             G+ PD    S LI       +V+ A ++L   +++GI   +  Y  L+ A       +
Sbjct: 390 SLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMME 449

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A  L+  M +      V   + +I   C    L    E+L  +   GL P+ +TYSI++
Sbjct: 450 RARNLFNEMDN-NFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVI 508

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
               +  D+E    +L Q    G +P++ +F  +I   S + E  + L
Sbjct: 509 NMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVL 556



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 145/342 (42%), Gaps = 25/342 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN LI    ++G + E I +L+ M  KG+   D V +            + EA      
Sbjct: 257 TYNVLINCMCKEGSVKEAIGVLKKMSEKGVAP-DVVTYNTLIKGLSDVLEMDEAMWLLEE 315

Query: 85  ----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
               K +  P + TFN ++           AFQV  +++E G   +   Y  LI    + 
Sbjct: 316 MVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRV 375

Query: 141 GKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            KV    E         ++PD   ++ LI    +   VDRA D+L+ M      ++P+  
Sbjct: 376 HKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRD--RGIEPELF 433

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
               L+ A    G ++RAR ++  +   N       Y+  I+   + GD + A  +   +
Sbjct: 434 HYIPLLVAMCEQGMMERARNLFNEMDN-NFPLDVVAYSTMIHGACKAGDLKTAKELLKSI 492

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             +G+ PD V  S +I+    +G +EAA  +L++    G    +  + SL+   S     
Sbjct: 493 VDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEI 552

Query: 313 QKALELYEHM--KSIKL-KPTVSTMNALITALCDGDQLPKTM 351
            K LEL   M  K+I L    +ST++  + A  +G  L +++
Sbjct: 553 NKVLELIREMITKNIALDSKIISTLSTSLVASNEGKALLQSL 594


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 186/438 (42%), Gaps = 36/438 (8%)

Query: 1   MQDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD 60
           +++G  + +   +     A YA D          L +  +I +   +L+  + +G     
Sbjct: 136 LENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEV 195

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
            VY       CK+ + +K+A   F+ +P+P    +N ++       D +GA + L+ + E
Sbjct: 196 SVYTILTRAFCKTGR-LKDALEIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNE 254

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
                                        V PD   +N LI    ++   D+A ++L EM
Sbjct: 255 ---------------------------RKVAPDVFTYNILIDGLCKASKTDKASEMLHEM 287

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
                 V PD +T  ++M     AG+ +RA  +  ++ + N + +   Y   I+   +  
Sbjct: 288 VD--RGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQ 345

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
           + + A  + D+    G +PD V  S L D     G+++ AFE+++E   +G +  +++Y+
Sbjct: 346 NVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYN 405

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           +L+     A   +KA EL E + S    P V T   ++  LC   +L K ++++  M   
Sbjct: 406 TLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKR 465

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQ-AKEDGVIPNLVMFKCIIGMC-SRRYEKA 418
           G  P+ ITY+ L+    R   V+    +  +   +D     L     + G C S R ++A
Sbjct: 466 GCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEA 525

Query: 419 RTLNEHVLSFNSGRPQIE 436
           + + + +     G P I+
Sbjct: 526 QKVVDGI----RGTPYID 539



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 180/401 (44%), Gaps = 37/401 (9%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    +Q  +    DL+++    G +     Y      +CK  + I EAF   K 
Sbjct: 333 TYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGR-IDEAFELVKE 391

Query: 87  VP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +      P L T+N L+  +C +SK +E A+++L  +  +G   D   YT ++    K G
Sbjct: 392 MSGKGCTPNLVTYNTLIDGLCKASK-TEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEG 450

Query: 142 KVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++D   + V+        P  + + AL+    ++G VD A  +  EM ++      D + 
Sbjct: 451 RLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSK--DCTADALA 508

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTP--EVYTIAINCCSQTGDWEFACSVYDD 251
             +L+     +    R +E  K++    I+GTP  +VY   ++   + G  +   +V++D
Sbjct: 509 YVSLVNGYCKSS---RTKEAQKVVD--GIRGTPYIDVYNALMDGYCKEGRLDEIPNVFED 563

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M  +G +P+    + ++D     GKV+ AF  L+   + G    ++SY+ ++     A  
Sbjct: 564 MACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASK 623

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            ++A ++ + M    + P   T N L+   C  ++    + +L +M   G+ P+ +TY+ 
Sbjct: 624 PKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNT 683

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           L+    + + +     L+ +   +G         C++  C+
Sbjct: 684 LISGLSQTNRLGDAYELMHEMLRNG---------CVVSACT 715



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 179/388 (46%), Gaps = 23/388 (5%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN L+    ++GR+ E  ++ EDM  +G +   K Y+     +CK  K + EAF F + +
Sbjct: 541 YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGK-VDEAFPFLESM 599

Query: 88  PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P + ++N+++     +   + A QVL  + +AG+  D   Y TL+    K  + 
Sbjct: 600 HSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERF 659

Query: 144 D---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D    + +N     V PD V +N LI+   Q+  +  A++++ EM      V     T  
Sbjct: 660 DDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSA-CTTYN 718

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++      G + +A  +   +  + ++     Y I I+   + G  + A S+  +M   
Sbjct: 719 TIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM--- 775

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGACSNAKNWQK 314
             + DEV  + +I     A +++ A ++ +E    +G+ +   +++ L+ A +  K   +
Sbjct: 776 DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDE 835

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           AL L   M      P+V T N +IT LC  D++ K  E+  +M   G+  ++++Y++L+ 
Sbjct: 836 ALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIY 895

Query: 375 A-CERKDDVEVGLMLLSQAKEDGVIPNL 401
             C +    E   +L   A  D  I +L
Sbjct: 896 GLCGQGRGKEALQVLEEMASSDCEIDDL 923



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 130/315 (41%), Gaps = 24/315 (7%)

Query: 230 TIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
           T   NC  QT    G  +   ++++ M   G  PD      +I       +++ AF +L 
Sbjct: 125 TFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLD 184

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           +AK +G    +  Y+ L  A       + ALE++ ++ S    P     NA+I   C  +
Sbjct: 185 KAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPS----PDAIAYNAIIHGHCRKN 240

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
                +E L +M    + P+  TY+IL+    +    +    +L +  + GV P+ V F 
Sbjct: 241 DCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFN 300

Query: 406 CII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYR-----------EAIV 452
            I+ G+C + ++E+A +L   V++  + RP      T ++ +  +           E + 
Sbjct: 301 SIMDGLCKAGKFERAHSLLA-VMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVS 359

Query: 453 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPR 510
           +G +P V   S +   L      D    LV+ +             +LIDG        +
Sbjct: 360 SGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEK 419

Query: 511 AFSLLEEAASFGIVP 525
           A+ LLE   S G VP
Sbjct: 420 AYELLESLVSSGFVP 434


>gi|255549482|ref|XP_002515794.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545122|gb|EEF46633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 924

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 173/378 (45%), Gaps = 13/378 (3%)

Query: 47  LLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           L+ +ME +G+     +YH     +  V   +K +    R  +    P++ ++  L+++ A
Sbjct: 433 LVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINLYA 492

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAMFENV-----KPDRV 155
                  A +V ++++ AG+K + K Y+ LI    K        A+FE+V     KPD V
Sbjct: 493 KVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVV 552

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           ++N +I A    G +DRA  ++ EM  E H   P   T   ++   A AG++ RA +V+ 
Sbjct: 553 LYNNIIRAFCGMGTMDRAICMVKEMQKERH--RPTSRTFMPIIHGFARAGEMKRALDVFD 610

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
           M+ +     T   +   I    +    E A  + D+M   GV P+E   + ++      G
Sbjct: 611 MMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALG 670

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
               AFE   + +++G+ + + +Y +L+ AC  +   Q AL + + M +  +       N
Sbjct: 671 DTGKAFEYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYN 730

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI        + +  +++  MK  G+ P+  TY+  + AC +  D+     ++ + +  
Sbjct: 731 ILIDGWARRGDVWEAADLMQQMKQGGVKPDIHTYTSFINACCKAGDMLRASKMMEEMETS 790

Query: 396 GVIPNLVMFKCIIGMCSR 413
           GV PN+  +  +I   +R
Sbjct: 791 GVKPNVKTYTTLIHGWAR 808



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 179/393 (45%), Gaps = 46/393 (11%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
           Y+AR  ++ ++++   E+ R   +   PT   +  L+   A  +D E A    R ++E G
Sbjct: 315 YYARRGDMHRARQTF-ESMRARGI--EPTSHVYTSLIHAYAVGRDMEEALSCARKMKEEG 371

Query: 123 LKADCKLYTTLITTCAKSGKVDA---MFENVKPDR------VVFNALITACGQSGAVDRA 173
           ++     Y+ ++   AK G  DA    F+  K DR      +++  +I A  Q+  +D+A
Sbjct: 372 VEMSLVTYSIIVGGFAKIGNADAADRWFKEAK-DRHSHMNAIIYGNMIYAYCQTCNMDQA 430

Query: 174 FDVLAEMNAE--VHPVD-------------------------------PDHITIGALMKA 200
             ++ EM  E    P+D                               P  ++ G L+  
Sbjct: 431 EALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYGCLINL 490

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A  G++ +A EV KM+    IK   + Y++ IN   +  DW  A ++++D+ K G+ PD
Sbjct: 491 YAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPD 550

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + +I      G ++ A  +++E + +       ++  ++   + A   ++AL++++
Sbjct: 551 VVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFD 610

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+     PTV T NALI  L +  Q+ K +E+L +M   G+ PN  TY+ ++       
Sbjct: 611 MMRRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALG 670

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           D        ++ +++G+  ++  ++ ++  C +
Sbjct: 671 DTGKAFEYFTKLRDEGLQLDVYTYEALLKACCK 703



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 127/325 (39%), Gaps = 41/325 (12%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF---- 147
           + T++ML++     KD   AF +   V + GLK D  LY  +I      G +D       
Sbjct: 516 MKTYSMLINGFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVK 575

Query: 148 ----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-----VHP------------ 186
               E  +P    F  +I    ++G + RA DV   M        VH             
Sbjct: 576 EMQKERHRPTSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKR 635

Query: 187 ----------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
                           V P+  T   +M   A  G   +A E +  +    ++     Y 
Sbjct: 636 QMEKAIEILDEMALAGVSPNEHTYTTIMHGYAALGDTGKAFEYFTKLRDEGLQLDVYTYE 695

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             +  C ++G  + A +V  +M+ + +  +    + LID     G V  A +++Q+ K  
Sbjct: 696 ALLKACCKSGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQMKQG 755

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G+   I +Y+S + AC  A +  +A ++ E M++  +KP V T   LI          K 
Sbjct: 756 GVKPDIHTYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKA 815

Query: 351 MEVLSDMKSLGLCPNTITYSILLVA 375
           +    +MK  GL P+   Y  L+ A
Sbjct: 816 LRCFQEMKLAGLKPDKAVYHCLMTA 840



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/366 (22%), Positives = 157/366 (42%), Gaps = 35/366 (9%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-------- 135
           F+ +  P+   + +++S  A   D   A Q    ++  G++    +YT+LI         
Sbjct: 298 FERIKKPSRREYGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDM 357

Query: 136 ----TCAKSGKVDAMFENVKPDRVVFNALI---TACGQSGAVDRAF----DVLAEMNAEV 184
               +CA+  K     E V+   V ++ ++      G + A DR F    D  + MNA  
Sbjct: 358 EEALSCARKMKE----EGVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNA-- 411

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
                  I  G ++ A      +D+A  + + +    I    ++Y   ++  +  G+ E 
Sbjct: 412 -------IIYGNMIYAYCQTCNMDQAEALVREMEGEGIDAPIDIYHTMMDGYTMVGNEEK 464

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
             +V++ + + G  P  V    LI+     GK+  A E+ +  ++ GI   + +YS L+ 
Sbjct: 465 CLTVFERLKECGFAPSVVSYGCLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLIN 524

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                K+W  A  ++E +    LKP V   N +I A C    + + + ++ +M+     P
Sbjct: 525 GFLKLKDWANAFAIFEDVVKDGLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRP 584

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMCSRR-YEKA-RTL 421
            + T+  ++    R  +++  L +    +  G IP +  F   I+G+  +R  EKA   L
Sbjct: 585 TSRTFMPIIHGFARAGEMKRALDVFDMMRRSGCIPTVHTFNALILGLVEKRQMEKAIEIL 644

Query: 422 NEHVLS 427
           +E  L+
Sbjct: 645 DEMALA 650



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 144/319 (45%), Gaps = 40/319 (12%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN +IR     G +   I ++++M+++      + +        ++ + +K A   F ++
Sbjct: 554 YNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGE-MKRALDVFDMM 612

Query: 88  PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 PT+ TFN L+      +  E A ++L  +  AG+  +   YTT++   A     
Sbjct: 613 RRSGCIPTVHTFNALILGLVEKRQMEKAIEILDEMALAGVSPNEHTYTTIMHGYA----- 667

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                              A G +G   +AF+   ++  E   +  D  T  AL+KAC  
Sbjct: 668 -------------------ALGDTG---KAFEYFTKLRDE--GLQLDVYTYEALLKACCK 703

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEV 262
           +G++  A  V K +   NI     VY I I+  ++ GD WE A  +   M + GV PD  
Sbjct: 704 SGRMQSALAVTKEMSAQNIPRNTFVYNILIDGWARRGDVWE-AADLMQQMKQGGVKPDIH 762

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             ++ I+    AG +  A ++++E +  G+   + +Y++L+   + A   +KAL  ++ M
Sbjct: 763 TYTSFINACCKAGDMLRASKMMEEMETSGVKPNVKTYTTLIHGWARASLPEKALRCFQEM 822

Query: 323 KSIKLKPTVSTMNALITAL 341
           K   LKP  +  + L+TAL
Sbjct: 823 KLAGLKPDKAVYHCLMTAL 841



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/311 (19%), Positives = 126/311 (40%), Gaps = 12/311 (3%)

Query: 130 YTTLITTCAKSG---KVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y  +++  A+ G   +    FE+     ++P   V+ +LI A      ++ A     +M 
Sbjct: 309 YGLMVSYYARRGDMHRARQTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCARKMK 368

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
            E   V+   +T   ++   A  G  D A   +K     +      +Y   I    QT +
Sbjct: 369 EE--GVEMSLVTYSIIVGGFAKIGNADAADRWFKEAKDRHSHMNAIIYGNMIYAYCQTCN 426

Query: 242 WEFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
            + A ++  +M  +G+  P +++   ++D     G  E    + +  K  G +  ++SY 
Sbjct: 427 MDQAEALVREMEGEGIDAPIDIY-HTMMDGYTMVGNEEKCLTVFERLKECGFAPSVVSYG 485

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
            L+   +      KALE+ + M+S  +K  + T + LI              +  D+   
Sbjct: 486 CLINLYAKVGKISKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDVVKD 545

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 420
           GL P+ + Y+ ++ A      ++  + ++ + +++   P    F  II   +R  E  R 
Sbjct: 546 GLKPDVVLYNNIIRAFCGMGTMDRAICMVKEMQKERHRPTSRTFMPIIHGFARAGEMKRA 605

Query: 421 LNEHVLSFNSG 431
           L+   +   SG
Sbjct: 606 LDVFDMMRRSG 616


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 175/373 (46%), Gaps = 22/373 (5%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           ++Q+   E  R   LVPN  L +  +L+     +K S  A +  R +Q +G+ AD  +YT
Sbjct: 27  QAQRCFDE-MRSKNLVPNVFLCS--ILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYT 83

Query: 132 TLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
            L++   K  ++D              +P+ V +N+LI    ++   DRA ++   M + 
Sbjct: 84  ALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSV 143

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMI-----HKYNIKGTPEV--YTIAINCC 236
                P  +T   L+      G+++RA  +++ +     H  + + +P V  Y++ I+  
Sbjct: 144 --ECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGL 201

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            +      A  + + M  +G  PD +  + L+D      KV AA+E+L+E  + G    +
Sbjct: 202 CKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNL 261

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           ++Y+SL+     A+    AL L   M      P V T   LI  LC   ++     +L+D
Sbjct: 262 VTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLAD 321

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRR 414
           M   G  P+ + Y++L+    + D V+  + LL +A   G+ P++V +  +I G+C S R
Sbjct: 322 MIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNR 381

Query: 415 YEKARTLNEHVLS 427
            ++A  L  +V S
Sbjct: 382 LDEACRLLLYVKS 394



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 178/394 (45%), Gaps = 28/394 (7%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDK-------VYHARFFNVCK 72
           + S  + +YN L+    R G++   + L ++M  +   DMD         Y      +CK
Sbjct: 144 ECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCK 203

Query: 73  SQKAIKEAFRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADC 127
           + + + +A    + +     +P + T+ +L+  +C  SK    A++VLR + +AG   + 
Sbjct: 204 ANR-VSQAVELLESMKARGCSPDVITYTILVDGLCKESK-VAAAWEVLREMLDAGCVPNL 261

Query: 128 KLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
             Y +L+    ++ +V        D       P+ V +  LI    + G V  A  +LA+
Sbjct: 262 VTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLAD 321

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
           M  +     PD +    L+     A QVD +  + +      IK     Y+  I    ++
Sbjct: 322 MIDKGGT--PDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRS 379

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
              + AC +   +  +G  PD +  S LID    AGKV+ AF++ +     G    +++Y
Sbjct: 380 NRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTY 439

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           S+L+     A    +A  L   M  +   P+  T N+LI  LCD + L + +E++ +M+ 
Sbjct: 440 STLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMER 499

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
               P+ +TY+IL+    R + V+  ++LL QAK
Sbjct: 500 SNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAK 533



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 173/394 (43%), Gaps = 26/394 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L +  R+S+ ++LLE M+ +G       Y      +CK  K +  A+   + + +    P
Sbjct: 201 LCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESK-VAAAWEVLREMLDAGCVP 259

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
            L T+N L+     ++    A  ++R +   G   +   Y TLI    K G+V       
Sbjct: 260 NLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAML 319

Query: 144 -DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
            D + +   PD +++N LI    ++  VD +  +L    A    + PD +T  +++    
Sbjct: 320 ADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRR--AVSGGIKPDVVTYSSVIYGLC 377

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            + ++D   E  +++     +G P    +Y+  I+   + G  + A  +Y+ M   G   
Sbjct: 378 RSNRLD---EACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDA 434

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  S LID    AG+V+ A  +L      G     ++Y+SL+    +  +  +A+EL 
Sbjct: 435 DVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELV 494

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-----GLCPNTITYSILLV 374
           E M+     P+  T N LI  +C  +++   + +L   K+      G   +TI YS L+ 
Sbjct: 495 EEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLID 554

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              +   V   L    +  ++GVIP+ + +  ++
Sbjct: 555 GLCKAGRVAEALDYFQEMIDNGVIPDHITYSILL 588



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 126/280 (45%), Gaps = 50/280 (17%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY--TIAINCCSQTGDWEFAC 246
           PD  T  AL++     G++D+A+  +  +   N+   P V+  +I I+   +      A 
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNL--VPNVFLCSILIDGLCKAKRSIDAL 64

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GA 305
             +  M   G++ D V  +AL+       +++ A  IL E ++ G    +++Y+SL+ G 
Sbjct: 65  RCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGL 124

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNA----------------------------- 336
           C N +   +A EL+EHMKS++  P++ T N                              
Sbjct: 125 CKNNEP-DRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDM 183

Query: 337 -------------LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
                        LI  LC  +++ + +E+L  MK+ G  P+ ITY+IL+    ++  V 
Sbjct: 184 DDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVA 243

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
               +L +  + G +PNLV +  ++ G+C +RR   A  L
Sbjct: 244 AAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALAL 283



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 163/350 (46%), Gaps = 20/350 (5%)

Query: 89  NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           +P + T+++L+  +C +++ S+ A ++L  ++  G   D   YT L+    K  KV A +
Sbjct: 188 SPNVITYSVLIDGLCKANRVSQ-AVELLESMKARGCSPDVITYTILVDGLCKESKVAAAW 246

Query: 148 ENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           E ++        P+ V +N+L+    ++  V  A  ++ +M        P+ +T G L+ 
Sbjct: 247 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTC--RGCTPNVVTYGTLID 304

Query: 200 ACANAGQV-DRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKG 256
                G+V D    +  MI K    GTP+  +Y + IN   +    + + ++       G
Sbjct: 305 GLCKVGRVKDACAMLADMIDK---GGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGG 361

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD V  S++I     + +++ A  +L   K++G    +I YS+L+     A    +A 
Sbjct: 362 IKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAF 421

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +LYE M        V T + LI  LC   ++ +   +L+ M  +G  P+T+TY+ L+   
Sbjct: 422 DLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGL 481

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEH 424
              + ++  + L+ + +     P+ V +  +I GMC   R + A  L E 
Sbjct: 482 CDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQ 531



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 179/399 (44%), Gaps = 27/399 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAFRFFKLVP-NPT 91
           L ++ R+ + + +L +M   G       Y++    +CK+ +    +E F   K V  +P+
Sbjct: 89  LWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPS 148

Query: 92  LSTFNMLMSVCASSKDSEGA---FQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVD 144
           + T+N L+     +   E A   FQ +   +   +   C      Y+ LI    K+ +V 
Sbjct: 149 MVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVS 208

Query: 145 A---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
               + E++K     PD + +  L+    +   V  A++VL EM  +   V P+ +T  +
Sbjct: 209 QAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREM-LDAGCV-PNLVTYNS 266

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMT 253
           L+     A +V  A     ++     +G TP V  Y   I+   + G  + AC++  DM 
Sbjct: 267 LLHGLCRARRVSDA---LALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMI 323

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            KG  PD +  + LI+    A +V+ +  +L+ A + GI   +++YSS++     +    
Sbjct: 324 DKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLD 383

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A  L  ++KS    P V   + LI  LC   ++ +  ++   M   G   + +TYS L+
Sbjct: 384 EACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLI 443

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
               +   V+   +LL++    G  P+ + +  +I G+C
Sbjct: 444 DGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLC 482



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 66/134 (49%), Gaps = 2/134 (1%)

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           + +Y++L+          +A   ++ M+S  L P V   + LI  LC   +    +    
Sbjct: 9   VYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFR 68

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SR 413
            M+  G+  +T+ Y+ LL    ++  ++  L +L + ++ G  PN+V +  +I G+C + 
Sbjct: 69  AMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNN 128

Query: 414 RYEKARTLNEHVLS 427
             ++A+ L EH+ S
Sbjct: 129 EPDRAQELFEHMKS 142



 Score = 43.1 bits (100), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 36/174 (20%), Positives = 74/174 (42%), Gaps = 2/174 (1%)

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD    +AL+      G+++ A     E +++ +   +   S L+     AK    AL  
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           +  M+   +        AL++ L    +L + + +L +M+  G  PN +TY+ L+    +
Sbjct: 67  FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCK 126

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNS 430
            ++ +    L    K     P++V +  ++    R  + E+A  L + +L   S
Sbjct: 127 NNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRS 180


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 189/418 (45%), Gaps = 53/418 (12%)

Query: 73  SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           S  ++  A RFF  + +    P + T+N+L+         + A  +LR ++ AG      
Sbjct: 167 SDASLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAG------ 220

Query: 129 LYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
                   C              P+ V +N L+ A  ++G VD A  ++  M      + 
Sbjct: 221 --------CG-------------PNVVTYNTLVAAFFRAGEVDGAERLVGMMREG--GLK 257

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ +T  +++     AG+++ AR+V+  + +  +      Y   +    + G    A SV
Sbjct: 258 PNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSV 317

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           + +MT+KG++PD V  ++LI     AG +E A  ++++ + +G+ +  +++++L+     
Sbjct: 318 FAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCK 377

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                 AL     MK  ++KP+V   NALI   C   ++ +  E+L +M++ GL P+ +T
Sbjct: 378 KGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVT 437

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSRRYEKARTLNEHVLS 427
           YS ++ A  +  D      L  Q  E GV+P+ + +  +I  +C  +    R  + HVL 
Sbjct: 438 YSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEK----RLSDAHVLF 493

Query: 428 FNS---GRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQ 470
            N    G    E  +TSL            AL ++ + + AG +P V   S ++  L 
Sbjct: 494 KNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLS 551



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 171/404 (42%), Gaps = 17/404 (4%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAI 77
           V+  +++YN L+R    +G   E + +L DM   G       Y+   A FF   +   A 
Sbjct: 186 VAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAE 245

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           +      +    P L TFN +++    +   E A +V   +   GL  D   Y TL+   
Sbjct: 246 RLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGY 305

Query: 138 AKSG---KVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            K+G   +  ++F     + + PD V F +LI    ++G ++RA  ++ +M      +  
Sbjct: 306 CKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRER--GLQM 363

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           + +T  AL+      G +D A    + + +  IK +   Y   IN     G  + A  + 
Sbjct: 364 NEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELL 423

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
            +M  KG+ PD V  S +I          +AFE+ Q+   +G+    I+YSSL+      
Sbjct: 424 HEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGE 483

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
           K    A  L+++M  + L+P   T  +LI   C    +   + +   M   G+ P+ +TY
Sbjct: 484 KRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTY 543

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           S+L+    +         LL +   +  IP    +  ++  C +
Sbjct: 544 SVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRK 587



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 162/378 (42%), Gaps = 26/378 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R G +     L+  M   GL      +++    +CK+ K +++A + F  
Sbjct: 227 TYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGK-MEDARKVFDE 285

Query: 87  VPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +    L+    ++N L+     +  S  A  V   + + G+  D   +T+LI    K+G 
Sbjct: 286 MVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGN 345

Query: 143 VDAMFENVKPDR--------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           ++     V+  R        V F ALI    + G +D A  +LA    +   + P  +  
Sbjct: 346 LERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA--LLAVRGMKQCRIKPSVVCY 403

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDD 251
            AL+      G++D ARE   ++H+   KG  P+V  Y+  I+   +  D   A  +   
Sbjct: 404 NALINGYCMVGRMDEARE---LLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQ 460

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M +KGV+PD +  S+LI       ++  A  + +     G+     +Y+SL+       N
Sbjct: 461 MLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGN 520

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            + AL L++ M    + P V T + LI  L    +  +  ++L  +      P    Y  
Sbjct: 521 VESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDA 580

Query: 372 LLVACERKDDVEVGLMLL 389
           L+  C RK +++  L LL
Sbjct: 581 LMHCC-RKAELKSVLALL 597



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 106/226 (46%), Gaps = 13/226 (5%)

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G    +++Y++++ A S+A +   A   ++ M S  + P V T N L+ ALC      + 
Sbjct: 151 GYVPSVLAYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 209

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 409
           + +L DM+  G  PN +TY+ L+ A  R  +V+    L+   +E G+ PNLV F  ++ G
Sbjct: 210 LSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNG 269

Query: 410 MC-SRRYEKARTLNEHV---------LSFNS-GRPQIENKWTSLALMVYREAIVAGTIPT 458
           MC + + E AR + + +         +S+N+      +   +  AL V+ E    G +P 
Sbjct: 270 MCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 329

Query: 459 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
           V   + ++  +    N +    LV  +      +      +LIDGF
Sbjct: 330 VVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGF 375



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 136/332 (40%), Gaps = 38/332 (11%)

Query: 32  YNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNV----CKSQKAIKEAFRF 83
           YN LI      GR+ E  +LL +ME KGL   D V ++   +     C +  A +   + 
Sbjct: 403 YNALINGYCMVGRMDEARELLHEMEAKGL-KPDVVTYSTIISAYCKNCDTHSAFELNQQM 461

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P   T++ L+ V    K    A  + + + + GL+ D   YT+LI    K G V
Sbjct: 462 LEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNV 521

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           ++            V PD V ++ LI    +S     A  +L ++  E  P+ P +    
Sbjct: 522 ESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHE-DPI-PANTKYD 579

Query: 196 ALMKACANA---------------GQVDRAREVYKMI--HKYNIKGTPEVYTIAINCCSQ 238
           ALM  C  A               G ++ A +VY+ +    +N+ G+  VY++ I+   +
Sbjct: 580 ALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGS--VYSVLIHGHCR 637

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G+   A S +  M + G  P+     +LI      G V  A +++Q+  N        +
Sbjct: 638 AGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLNYCSLADAEA 697

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
             +L+    N  N    L++   M    L P+
Sbjct: 698 SKALIDLNLNEGNVDAVLDVLHGMAKDGLLPS 729


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 184/395 (46%), Gaps = 21/395 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFK 85
           +Y  LIR     G++ E ++  + +  +G+  +D V +    N +CK  +    A R  +
Sbjct: 121 TYTTLIRGLCLNGQVKESLNFHDRLVSQGI-KLDHVSYGTLINGLCKIGQT-GPALRLLR 178

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P +  +N ++      K    AF +   + E  +  +   YT+LI      G
Sbjct: 179 KIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVG 238

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++D  F        +NV P+   FN L+    + G +  A  ++A M  E   V PD  T
Sbjct: 239 QLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKE--GVGPDVFT 296

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             ALM       +  +A+ V+ ++ +  +      Y++ I+  S+    + A  +++ M 
Sbjct: 297 YNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMR 356

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            + VIPD V  S+LID    +G++ +A + + E  ++G    +I+Y+SL+ A   +    
Sbjct: 357 NENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVD 416

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA+ L + +K   ++  + T N L+  LC   +L    +V  D+   G   + +TYSI++
Sbjct: 417 KAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMI 476

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
               ++   +  L LLS+ ++ G +P+ + ++ II
Sbjct: 477 NGLCKESLFDEALTLLSKMEDKGCVPDAIAYETII 511



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 141/338 (41%), Gaps = 12/338 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF------ 147
           T N+L++     +    AF V   + + G + D   YTTLI     +G+V          
Sbjct: 86  TLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRL 145

Query: 148 --ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             + +K D V +  LI    + G    A  +L ++  E+    PD +    ++       
Sbjct: 146 VSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEI--CRPDVVMYNTIIDGLCKDK 203

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            V  A ++Y  + +  +      YT  I      G  + A  + ++M  K V P+    +
Sbjct: 204 LVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFN 263

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+D     GK+  A  ++     +G+   + +Y++LM      K   KA  ++  M  +
Sbjct: 264 TLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQM 323

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            +   V + + +I+ L     L + M++   M++  + P+ + YS L+    +   +   
Sbjct: 324 GVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSA 383

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
           L  + +  + G  PN++ +  +I  +C S + +KA  L
Sbjct: 384 LKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIAL 421



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 112/276 (40%), Gaps = 45/276 (16%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P + T+N LM      K++  A  V  ++ + G+  D   Y+ +I+  +K   +D     
Sbjct: 292 PDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDL 351

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 ENV PD V +++LI    +SG ++ A   + EM+    P  P+ IT  +L+ A 
Sbjct: 352 FEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQP--PNVITYTSLIDAL 409

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             + QVD+A  + K I    I+     Y I +                D + K G + D 
Sbjct: 410 CKSHQVDKAIALLKKIKDQGIQANMYTYNILV----------------DGLCKDGRLTD- 452

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
                             A ++ Q+   +G +V +++YS ++        + +AL L   
Sbjct: 453 ------------------AQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSK 494

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           M+     P       +I A  + D   K  ++L +M
Sbjct: 495 MEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 104/226 (46%)

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
           E+H +  ++IT+  L+ +  +  Q++ A  V+  I K   +     YT  I      G  
Sbjct: 76  ELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQV 135

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           + + + +D +  +G+  D V    LI+     G+   A  +L++ + +     ++ Y+++
Sbjct: 136 KESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTI 195

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +      K  + A +LY  M   ++ P V T  +LI   C   QL K   +L++M    +
Sbjct: 196 IDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNV 255

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            PN  T++ L+    ++  +     L++   ++GV P++  +  ++
Sbjct: 256 NPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALM 301



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 124/299 (41%), Gaps = 9/299 (3%)

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF-QVLRLVQEAGLKADCKLYTTLITTCAK 139
           FRF  ++PN TL   +       +  D+  +F ++LR+     +    K+  +L+ T   
Sbjct: 6   FRFHSIIPNSTLLLSHTHFHSLPNLNDAIDSFNRMLRMRPPPPIIKFGKILGSLVKT-KH 64

Query: 140 SGKVDAMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
              V  +F+      ++ + +  N LI +      ++ AF V A++    +   PD IT 
Sbjct: 65  YPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGY--QPDIITY 122

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L++     GQV  +   +  +    IK     Y   IN   + G    A  +   +  
Sbjct: 123 TTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEG 182

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           +   PD V  + +ID       V  AF++  E   + +   +++Y+SL+          K
Sbjct: 183 EICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDK 242

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           A  L   M    + P V T N L+  LC   ++ +   +++ M   G+ P+  TY+ L+
Sbjct: 243 AFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALM 301



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 94/235 (40%), Gaps = 2/235 (0%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P  I  G ++ +            +++ +  + I+       I IN          A SV
Sbjct: 47  PPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSV 106

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +  + K G  PD +  + LI      G+V+ +        +QGI +  +SY +L+     
Sbjct: 107 FAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCK 166

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                 AL L   ++    +P V   N +I  LC    +    ++  +M    + PN +T
Sbjct: 167 IGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVT 226

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTL 421
           Y+ L+        ++    LL++     V PN+  F  ++ G+C   +  +A++L
Sbjct: 227 YTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSL 281


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 159/339 (46%), Gaps = 17/339 (5%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K+  +PT  T+ +L+      +  + A+Q+L  + +     D  +Y  LI    K GK+D
Sbjct: 85  KMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKID 144

Query: 145 A-------MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           A       M E +  PD + + +LI  C Q+ A+D A  ++ +M      + PD +   A
Sbjct: 145 AARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKE--SGLTPDTVAYNA 202

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMT 253
           L+       Q++   EV K++ +    G  P+   Y   + C  ++G +E A  + + M 
Sbjct: 203 LLNGLCKQNQLE---EVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMI 259

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +K   PD V  ++L+D      K++ A  +L++   +  +  +I+Y++L+G  S A    
Sbjct: 260 EKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLA 319

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A  + E M    + P + T N L+  LC   +L +  E+L  M      P+ +TYSIL+
Sbjct: 320 DAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILV 379

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
               +   V+   +LL    E G  PNLV F  +I G C
Sbjct: 380 NGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFC 418



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 107/451 (23%), Positives = 194/451 (43%), Gaps = 35/451 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L +  RI E   LL++M +K       VY+     +CK  K I  A    K++      P
Sbjct: 102 LCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGK-IDAARNVLKMMLERSCVP 160

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDAMF 147
            + T+  L+  C  +   + A +++  ++E+GL  D   Y  L+    K  +   V  + 
Sbjct: 161 DVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLL 220

Query: 148 ENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           E +     +PD   +N ++    +SG  + A  +L +M  +     PD +T  +LM    
Sbjct: 221 EEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEK--KCGPDVVTYNSLMDGFC 278

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              ++D A  + + +       T   YT  I   S+      A  V +DM K G+ PD V
Sbjct: 279 KVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLV 338

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L+D    AGK+E A E+L+    +  +  +++YS L+           A  L E M
Sbjct: 339 TYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMM 398

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
                +P + T N +I   C   ++ +  +VL  MK +   P+ +TYS L+    + + +
Sbjct: 399 LERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRM 458

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWT 440
           +    +L      G+ P+   +  ++ G+CS  + E+A+ + +  L    G P   + + 
Sbjct: 459 QDAFAIL------GISPDKASYSSMLEGLCSTGKVEEAQEVMD--LMTKQGCPPTSSHY- 509

Query: 441 SLALMVYREAIVAGTIPTVEVVSKVLGCLQL 471
                    A++ G +  VE   + L  LQ+
Sbjct: 510 ---------ALIIGGLCDVERGDEALKMLQV 531



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 158/358 (44%), Gaps = 16/358 (4%)

Query: 79  EAFRFFKL----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           E + FF+        P+ ST+  L++  + + +S+   ++   +       D   + T++
Sbjct: 7   EGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTIL 66

Query: 135 TTCAKSGKVDAMFENVK------PDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPV 187
               + G +D    + +      P    +  LI    Q   +D A+ +L EM   + HP 
Sbjct: 67  KAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHP- 125

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
             D      L+      G++D AR V KM+ + +       YT  I  C QT   + A  
Sbjct: 126 --DAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARK 183

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           + + M + G+ PD V  +AL++      ++E   ++L+E    G      SY++++    
Sbjct: 184 LMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLC 243

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            +  +++A ++ E M   K  P V T N+L+   C   ++ +   +L DM      P  I
Sbjct: 244 ESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVI 303

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNE 423
           TY+ L+    R D +     ++    + G+ P+LV + C++ G+C + + E+A  L E
Sbjct: 304 TYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLE 361



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 156/333 (46%), Gaps = 25/333 (7%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  L +YN L+    + G++ E  +LLE M  K        Y      +CK  K + +A
Sbjct: 333 ISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGK-VDDA 391

Query: 81  FRFFKLV----PNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
               +++      P L TFN M+   C + K  EG  +VL L++E     D   Y+TLI 
Sbjct: 392 RLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEG-HKVLELMKEVSCTPDVVTYSTLID 450

Query: 136 TCAKSGKVDAMFE--NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-- 191
              K+ ++   F    + PD+  +++++     +G V+ A +V+  M  +  P    H  
Sbjct: 451 GYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYA 510

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-PEVYT--IAINCCSQTGDWEFACSV 248
           + IG L         V+R  E  KM+   + +G  P +YT  I IN   +T   E A +V
Sbjct: 511 LIIGGLC-------DVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINV 563

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            D M +KG +PD    ++LID      K++AA++  +  ++ G     ++Y+ L+     
Sbjct: 564 LDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQ 623

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           + N +KA+E+ + M      P  +T  +L+ +L
Sbjct: 624 SGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 178/406 (43%), Gaps = 27/406 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN ++      G+  E   +LE M  K        Y++     CK  K + EA R  + 
Sbjct: 234 SYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSK-MDEAERLLED 292

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      PT+ T+  L+   + +     A++V+  + +AG+  D   Y  L+    K+GK
Sbjct: 293 MVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGK 352

Query: 143 VDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           ++   E        +  PD V ++ L+    + G VD A  +L EM  E     P+ +T 
Sbjct: 353 LEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDA-RLLLEMMLE-RGCQPNLVTF 410

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             ++     AG+VD   +V +++ +  +  TP+V T +    +    +  A  + D    
Sbjct: 411 NTMIDGFCKAGKVDEGHKVLELMKE--VSCTPDVVTYS----TLIDGYCKANRMQDAFAI 464

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G+ PD+   S++++     GKVE A E++     QG       Y+ ++G   + +   +
Sbjct: 465 LGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDE 524

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           AL++ + M     +P + T + LI  LC   ++   + VL  M   G  P+  TY+ L+ 
Sbjct: 525 ALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLID 584

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA 418
              + + ++         ++ G  P+ + +  +I G C S   EKA
Sbjct: 585 GFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKA 630



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 126/279 (45%), Gaps = 9/279 (3%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           KP    + ALIT   ++G      ++  EM A      PD IT   ++KA    G +DRA
Sbjct: 21  KPSNSTYGALITGFSRAGNSKMVLEIANEMLA--RRFSPDVITHNTILKAYCQIGDLDRA 78

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
              ++   K     T   Y I I+   Q    + A  + D+M +K   PD    + LI  
Sbjct: 79  LSHFR--GKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAG 136

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               GK++AA  +L+    +     +I+Y+SL+  C       +A +L E MK   L P 
Sbjct: 137 LCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPD 196

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLL 389
               NAL+  LC  +QL +  ++L +M   G  P+T +Y +++   CE     E G  +L
Sbjct: 197 TVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAG-KIL 255

Query: 390 SQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNEHV 425
            +  E    P++V +  ++ G C  S+  E  R L + V
Sbjct: 256 EKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMV 294



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 164/390 (42%), Gaps = 25/390 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR---- 82
           +YN L+    +  ++ E   LLEDM  +        Y        ++ + + +A+R    
Sbjct: 269 TYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADR-LADAYRVMED 327

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            FK   +P L T+N L+     +   E A ++L ++ E     D   Y+ L+    K GK
Sbjct: 328 MFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGK 387

Query: 143 VD-------AMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           VD        M E   +P+ V FN +I    ++G VD    VL E+  EV    PD +T 
Sbjct: 388 VDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVL-ELMKEVS-CTPDVVTY 445

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+     A   +R ++ + ++    I      Y+  +     TG  E A  V D MTK
Sbjct: 446 STLIDGYCKA---NRMQDAFAIL---GISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTK 499

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           +G  P     + +I       + + A ++LQ    +G    + +YS L+      K  + 
Sbjct: 500 QGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVED 559

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A+ + + M      P V+T  +LI   C  +++    +    M+  G  P+ + Y+IL+ 
Sbjct: 560 AINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILIS 619

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
              +  +VE  + ++    E G  P+   +
Sbjct: 620 GFCQSGNVEKAIEVMQLMLEKGCNPDAATY 649



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 161/361 (44%), Gaps = 29/361 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LI    R  R+++   ++EDM + G+      Y+     +CK+ K ++EA    ++
Sbjct: 304 TYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGK-LEEAHELLEV 362

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+++L++        + A  +L ++ E G + +   + T+I    K+GK
Sbjct: 363 MVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGK 422

Query: 143 VDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           VD    + E +K     PD V ++ LI    ++  +  AF +L         + PD  + 
Sbjct: 423 VDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILG--------ISPDKASY 474

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFACSVYDDM 252
            ++++   + G+V+ A+EV  ++ K     T   Y + I   C  + GD   A  +   M
Sbjct: 475 SSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDE--ALKMLQVM 532

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
           +++G  P+    S LI+      +VE A  +L     +G    + +Y+SL+         
Sbjct: 533 SERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKM 592

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
             A + ++ M+    +P     N LI+  C    + K +EV+  M   G  P+  TY  L
Sbjct: 593 DAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSL 652

Query: 373 L 373
           +
Sbjct: 653 M 653


>gi|356503440|ref|XP_003520516.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Glycine max]
          Length = 832

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 170/390 (43%), Gaps = 57/390 (14%)

Query: 81  FRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           FR+ K   N       +NM++ + A    ++ A  +   +QE   K D + Y  +I    
Sbjct: 138 FRWLKNQKNYRARNDIYNMMIRLHARHNRTDQARGLFFEMQEWRCKPDVETYNAIINAHG 197

Query: 139 KSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           ++G+         D +   + P R  +N LI ACG SG    A +V  +M    + V PD
Sbjct: 198 RAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTE--NGVGPD 255

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +T   ++ A  +  Q  +A   ++++   +I+       I I+C  +   ++ A  +++
Sbjct: 256 LVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFN 315

Query: 251 DMTKKG--VIPDEVFLSALIDFAGHAGKV---EAAFEIL--------------------- 284
            M +K     PD V  +++I      G+V   EAAF ++                     
Sbjct: 316 SMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAA 375

Query: 285 -----------QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
                       E K  G    I+SY+SL+ A   ++   KA ++++ MK  KLKP + +
Sbjct: 376 RGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVS 435

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA---CERKDDVEVGLMLLS 390
            NALI A      L   +++L +M+  G+ PN ++   LL A   C RK  ++    +L+
Sbjct: 436 YNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSRKVKIDT---VLT 492

Query: 391 QAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
            A+  G+  N V +   IG C     Y+KA
Sbjct: 493 AAEMRGIKLNTVAYNAAIGSCMNVGEYDKA 522



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/417 (21%), Positives = 185/417 (44%), Gaps = 27/417 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G   E +++ + M   G+   D V H    +  KS     +A  +F+L
Sbjct: 223 TYNNLINACGSSGNWKEALNVCKKMTENGV-GPDLVTHNIILSAFKSGAQYSKALSYFEL 281

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLI---T 135
           +      P  +T N+++      +  + A ++   ++E   K++C      +T++I   +
Sbjct: 282 MKGTHIRPDTTTLNIVIHCLVKLRQYDKAIEIFNSMREK--KSECTPDVVTFTSIIHLYS 339

Query: 136 TCAKSGKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
            C +    +A F     E +KP+ V +NALI A    G  + A     E+  + +   PD
Sbjct: 340 VCGQVENCEAAFNMMIAEGLKPNIVSYNALIGAYAARGMDNEAHLFFNEI--KQNGFRPD 397

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            ++  +L+ A   + +  +AR+++  + +  +K     Y   I+     G    A  +  
Sbjct: 398 IVSYTSLLNAYGRSQKPHKARQIFDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILR 457

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M ++G+ P+ V +  L+   G   +      +L  A+ +GI +  ++Y++ +G+C N  
Sbjct: 458 EMEQEGIQPNVVSICTLLAACGRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVG 517

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            + KA+ LY+ M+  K+K    T   LI+  C   +  + +  + ++  L L  +   YS
Sbjct: 518 EYDKAIGLYKSMRKKKIKTDSVTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYS 577

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM--CSRRYEKARTLNEHV 425
             + A  ++  +       +  K  G  P++V +  ++     +  +EKA  L E +
Sbjct: 578 SAICAYSKQGQIVEAESTFNLMKSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEM 634



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 147/333 (44%), Gaps = 51/333 (15%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------- 142
           P + ++N L+   A+      A      +++ G + D   YT+L+    +S K       
Sbjct: 361 PNIVSYNALIGAYAARGMDNEAHLFFNEIKQNGFRPDIVSYTSLLNAYGRSQKPHKARQI 420

Query: 143 VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M  N +KP+ V +NALI A G +G +  A  +L EM  E   + P+ ++I  L+ AC
Sbjct: 421 FDRMKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQE--GIQPNVVSICTLLAAC 478

Query: 202 A-----------------------------------NAGQVDRAREVYKMIHKYNIKGTP 226
                                               N G+ D+A  +YK + K  IK   
Sbjct: 479 GRCSRKVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKKKIKTDS 538

Query: 227 EVYTIAINCCSQTGDWEFACSVYDD-MTKKGVIPDEVFLSALIDFA--GHAGKVEAAFEI 283
             YT+ I+ C +   +  A S  ++ M  K  +  EV+ SA+  ++  G   + E+ F +
Sbjct: 539 VTYTVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNL 598

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           +   K+ G    +++Y++++ A + A+NW+KA  L+E M++  +K       AL+ +   
Sbjct: 599 M---KSSGCYPDVVTYTAMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNK 655

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           G Q  + + +   M+   +  +   +  ++ AC
Sbjct: 656 GGQPGRVLSLAESMREKEIPFSDTIFFEMVSAC 688



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 123/266 (46%), Gaps = 9/266 (3%)

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           R  F  LI    Q G+++    V   +  + +    + I    +++  A   + D+AR +
Sbjct: 115 RKNFPFLIKELTQRGSIEHCNRVFRWLKNQKNYRARNDI-YNMMIRLHARHNRTDQARGL 173

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           +  + ++  K   E Y   IN   + G W +A ++ DDM +  + P     + LI+  G 
Sbjct: 174 FFEMQEWRCKPDVETYNAIINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGS 233

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           +G  + A  + ++    G+   +++++ ++ A  +   + KAL  +E MK   ++P  +T
Sbjct: 234 SGNWKEALNVCKKMTENGVGPDLVTHNIILSAFKSGAQYSKALSYFELMKGTHIRPDTTT 293

Query: 334 MNALITALCDGDQLPKTMEVLSDM--KSLGLCPNTITYSI---LLVACERKDDVEVGLML 388
           +N +I  L    Q  K +E+ + M  K     P+ +T++    L   C + ++ E    +
Sbjct: 294 LNIVIHCLVKLRQYDKAIEIFNSMREKKSECTPDVVTFTSIIHLYSVCGQVENCEAAFNM 353

Query: 389 LSQAKEDGVIPNLVMFKCIIGMCSRR 414
           +     +G+ PN+V +  +IG  + R
Sbjct: 354 MIA---EGLKPNIVSYNALIGAYAAR 376



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/430 (22%), Positives = 178/430 (41%), Gaps = 58/430 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-KSQKAIKEAFRFFK 85
           SYN LI     +G  +E      ++++ G    D V +    N   +SQK  K    F +
Sbjct: 365 SYNALIGAYAARGMDNEAHLFFNEIKQNGFRP-DIVSYTSLLNAYGRSQKPHKARQIFDR 423

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141
           +  N   P L ++N L+    S+     A ++LR +++ G++ +     TL+  C +   
Sbjct: 424 MKRNKLKPNLVSYNALIDAYGSNGLLADAIKILREMEQEGIQPNVVSICTLLAACGRCSR 483

Query: 142 --KVD-----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
             K+D     A    +K + V +NA I +C   G  D+A  +   M  +   +  D +T 
Sbjct: 484 KVKIDTVLTAAEMRGIKLNTVAYNAAIGSCMNVGEYDKAIGLYKSMRKK--KIKTDSVTY 541

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+  C    +   A    + I    +  + EVY+ AI   S+ G    A S ++ M  
Sbjct: 542 TVLISGCCKMSKYGEALSFMEEIMHLKLPLSKEVYSSAICAYSKQGQIVEAESTFNLMKS 601

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM----------- 303
            G  PD V  +A++D    A   E A+ + +E +   I +  I+ ++LM           
Sbjct: 602 SGCYPDVVTYTAMLDAYNAAENWEKAYALFEEMEASSIKLDTIACAALMRSFNKGGQPGR 661

Query: 304 ------------------------GACSNAKNWQKALELYEHMKSIKLKPTVST--MNAL 337
                                    ACS  ++W+ A+++ ++++     P +S+  +N  
Sbjct: 662 VLSLAESMREKEIPFSDTIFFEMVSACSILQDWRTAVDMIKYIEPS--LPVISSGCLNQF 719

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           + +L    ++   +++   M + G   N  TYSILL       +    L +L   ++ G+
Sbjct: 720 LHSLGKSGKIETMLKLFFKMLASGADVNLNTYSILLKNLLSSGNWRKYLEVLQWMEDAGI 779

Query: 398 IPNLVMFKCI 407
            P+  M+  I
Sbjct: 780 HPSKEMYHDI 789


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 185/399 (46%), Gaps = 17/399 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RF 83
           +YN LI    RQG + E  +L++ M  KGL      Y+A    +CK+ K ++        
Sbjct: 395 TYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEM 454

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K+  +P  +T+N+L+  C  + +   A ++   +   G+  D   ++ LI   +K+G +
Sbjct: 455 LKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCL 514

Query: 144 DA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D     F ++K     PD V++  LI    ++G +  A  V  EM  +   +D   +T  
Sbjct: 515 DQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDV--VTYN 572

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++        +  A E++  + +  +      +T  IN   + G+   A ++++ M ++
Sbjct: 573 TILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQR 632

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + PD V  + LID      ++E   E+  +  ++ I    ISY  L+    N     +A
Sbjct: 633 NLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEA 692

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             L++ M     + T+ T N ++   C      K  E LS+M   G+ P+ ITY+ L+  
Sbjct: 693 FRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLING 752

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
             ++++++    L+++ +  G++P+++ +  I+   SR+
Sbjct: 753 FIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQ 791



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 160/351 (45%), Gaps = 15/351 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L++ G +    ++ +++ R G+       +     +CK+QK I+    F   +      P
Sbjct: 333 LVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQK-IENTKSFLSDMEEKGVFP 391

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------V 143
            + T+N L++        E AF+++  +   GLK     Y  +I    K+GK       +
Sbjct: 392 DVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVL 451

Query: 144 DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M +  + PD   +N L+  C ++  +  A  +  EM ++   V PD ++  AL+   +
Sbjct: 452 DEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQ--GVVPDLVSFSALIGLLS 509

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G +D+A + ++ +    +     +YTI I    + G    A  V D+M ++G   D V
Sbjct: 510 KNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVV 569

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + +++       +  A E+  E   +G+     ++++L+       N  KA+ L+E M
Sbjct: 570 TYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMM 629

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
               LKP V T N LI   C G ++ K  E+ +DM S  + PN I+Y IL+
Sbjct: 630 IQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 680



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 143/326 (43%), Gaps = 53/326 (16%)

Query: 91  TLSTFNMLMSVCASSK---DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           +L +F+ ++ +   S+   D++    +LR+V+++G+ +  ++  +L+ T    G    +F
Sbjct: 235 SLQSFSAMIHILVRSRRLPDAQAV--ILRMVRKSGV-SRVEIVESLVLTYGNCGSNPLVF 291

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + +    V    L   C        AF VL      V  ++  +  +G L+K     G V
Sbjct: 292 DLLVRTYVQARKLREGC-------EAFRVLKSKGLCV-SINACNSLLGGLVKV----GWV 339

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A E+Y+ + +  ++       I IN   +    E   S   DM +KGV PD V  + L
Sbjct: 340 DLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTL 399

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I+     G +E AFE++     +G                                   L
Sbjct: 400 INAYCRQGLLEEAFELMDSMSGKG-----------------------------------L 424

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           KP V T NA+I  LC   +  +   VL +M  +G+ P+T TY+ILLV C R D++     
Sbjct: 425 KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER 484

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +  +    GV+P+LV F  +IG+ S+
Sbjct: 485 IFDEMPSQGVVPDLVSFSALIGLLSK 510



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 105/243 (43%), Gaps = 15/243 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   + G +++ + L E M ++ L      Y+      CK  +  K    +  ++     
Sbjct: 611 NGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIY 670

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
           P   ++ +L++   +      AF++   + E G +A      T++    ++G   K D  
Sbjct: 671 PNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEF 730

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             N     + PD + +N LI    +   +DRAF ++ +M  E   + PD IT   ++   
Sbjct: 731 LSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKM--ENSGLLPDVITYNVILNGF 788

Query: 202 ANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           +  G++  A  +  KMI +  +      YT  IN      + + A  V+D+M ++G +PD
Sbjct: 789 SRQGRMQEAELIMLKMIER-GVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847

Query: 261 EVF 263
           + F
Sbjct: 848 DKF 850


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 118/489 (24%), Positives = 199/489 (40%), Gaps = 79/489 (16%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           P  +TF  LM         E A +V   + EAG          LI    K G+V+     
Sbjct: 230 PDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGY 289

Query: 145 ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               + +  +PD+V +N  +    Q+G V  A  V+  M  E H  DPD  T   ++   
Sbjct: 290 IQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGH--DPDVFTYNTVINCL 347

Query: 202 ANAGQVDRAR--------------------------------EVYKMIHKYNIKG-TPEV 228
           +  G++D A+                                E   +  +  +KG +P+V
Sbjct: 348 SKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDV 407

Query: 229 YT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           YT  I IN   + GD      ++++M   G  PDEV  + LID     GK+  A ++L E
Sbjct: 408 YTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNE 467

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            ++ G     ++Y++++ A       ++A E+++ M +  +  +  T N LI  LC   +
Sbjct: 468 MESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKR 527

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +    E++  M   GL PN ITY+ +L    ++ +++    +L     +G   ++V +  
Sbjct: 528 IDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGT 587

Query: 407 II-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 465
           +I G+C                  +GR Q+       AL + R   + G  PT +  + V
Sbjct: 588 LINGLCK-----------------AGRTQV-------ALKLLRGMRIKGIRPTPKAYNPV 623

Query: 466 LGCLQLPYNADIRE-----RLVENLGVSADALK-RSNLCSLIDGFGEYDPRAFSLLEEAA 519
           +  L    N  +R+     R +  +G   DAL  +    SL  G G     AF  L E  
Sbjct: 624 IQSLFRRNN--LRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIK-EAFDFLVEMV 680

Query: 520 SFGIVPCVS 528
           + G +P  S
Sbjct: 681 NKGFMPEFS 689



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 154/347 (44%), Gaps = 12/347 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P + T N L+     +     A  +L  +   G+  D   +TTL+    + G ++A    
Sbjct: 195 PDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRV 254

Query: 146 ----MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               M     P  V  N LI    + G V+ A   + +  A+    +PD +T    +   
Sbjct: 255 KAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIAD--GFEPDQVTYNTFVHGL 312

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G V  A +V  ++ +         Y   INC S+ G+ + A  + + M  +G +PD 
Sbjct: 313 CQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDT 372

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LI       ++E A ++ +E   +G+S  + +++ L+ A     +    + L+E 
Sbjct: 373 TTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEE 432

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MKS    P   T N LI  LC   +L   +++L++M+S G   +T+TY+ ++ A  +K  
Sbjct: 433 MKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMR 492

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
           +E    +  Q    G+  + V F  +I G+C ++R + A  L E ++
Sbjct: 493 IEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMV 539



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 4/260 (1%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V+ D VVFN L+    +   +     V  EM      + PD +T+  L+KA   A QV  
Sbjct: 158 VQADTVVFNHLLNVLVEGSKLKLLESVYNEMTG--RGIQPDVVTLNTLIKALCRAHQVRT 215

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A  + + +  + +      +T  +    + G  E A  V   M + G  P  V ++ LI+
Sbjct: 216 AVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLIN 275

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLK 328
                G+VE A   +Q+    G     ++Y++ + G C N  +   AL++ + M      
Sbjct: 276 GYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNG-HVSHALKVMDLMLQEGHD 334

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P V T N +I  L    +L +   +++ M   G  P+T T++ L+VA   ++ +E  L L
Sbjct: 335 PDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDL 394

Query: 389 LSQAKEDGVIPNLVMFKCII 408
             +    G+ P++  F  +I
Sbjct: 395 ARELTVKGLSPDVYTFNILI 414



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 120/272 (44%), Gaps = 5/272 (1%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           E+  P   V+  ++   G +GA D    ++ EM  E H V    + + + +++ A   + 
Sbjct: 83  EDFAPSSAVYEEIVQKLGTAGAFDLMEGLVREMRREGHQVRA--VVVRSFVESYARLRRF 140

Query: 208 DRARE-VYKMIHK--YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           D A + V   +    + ++    V+   +N   +    +   SVY++MT +G+ PD V L
Sbjct: 141 DDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTL 200

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + LI     A +V  A  +L+E  + G++    ++++LM       + + AL +   M  
Sbjct: 201 NTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMME 260

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
               PT  T+N LI   C   ++   +  +    + G  P+ +TY+  +    +   V  
Sbjct: 261 AGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSH 320

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
            L ++    ++G  P++  +  +I   S+  E
Sbjct: 321 ALKVMDLMLQEGHDPDVFTYNTVINCLSKNGE 352



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 116/281 (41%), Gaps = 39/281 (13%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G++   +DLL +ME  G       Y+     +CK  + I+EA   F  
Sbjct: 444 TYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMR-IEEAEEVFDQ 502

Query: 87  VPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +    +S    TFN L+     +K  + A                   T LI    K G 
Sbjct: 503 MDAQGISRSAVTFNTLIDGLCKAKRIDDA-------------------TELIEQMVKEG- 542

Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  ++P+ + +N+++T   + G + +A D+L  M A    +D   +T G L+    
Sbjct: 543 -------LQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDV--VTYGTLINGLC 593

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AG+   A ++ + +    I+ TP+ Y   I    +  +   A +++ +MT+ G  PD +
Sbjct: 594 KAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDAL 653

Query: 263 FLSALI-DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
               +        G ++ AF+ L E  N+G      S+  L
Sbjct: 654 TYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRML 694


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 188/424 (44%), Gaps = 49/424 (11%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAM-FENVKPDRVVFNALIT 162
           A + +  ++  G K +   Y T+I   +  G +       DAM  + ++PD   + +LI+
Sbjct: 192 AREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLIS 251

Query: 163 ACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
              + G ++ A   FD + E+      + P+ +T   L+    N G ++RA      + K
Sbjct: 252 GMCKEGRLEEASGLFDKMVEIG-----LVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK 306

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
             I  +   Y + ++     G    A  +  +M KKG+IPD +  + LI+     G  + 
Sbjct: 307 KGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKR 366

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           AF++  E  ++GI    ++Y+SL+   S     ++A +L+E +    + P V   NA+I 
Sbjct: 367 AFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMID 426

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
             C    + +   +L +M    + P+ +T++ L+    R+  VE   MLL + K  G+ P
Sbjct: 427 GHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKP 486

Query: 400 NLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTV 459
           + + +  +I    RR +                  I++     A  V  E +  G  PT+
Sbjct: 487 DHISYNTLISGYGRRGD------------------IKD-----AFXVRDEMLSIGFNPTL 523

Query: 460 EVVSKVLGCLQLPYNADIRERLVE---NLGVSADALKRSNLCSLIDGFGEYDPRAFSLLE 516
              + ++ CL      D+ E L++   N G+S D    S   SLI+G G  D    +L+E
Sbjct: 524 LTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDD---STYLSLIEGMGNVD----TLVE 576

Query: 517 EAAS 520
           + AS
Sbjct: 577 DNAS 580



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 161/328 (49%), Gaps = 12/328 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P + ++N ++   +S  + EGA ++L  ++  G++ D   Y +LI+   K G++      
Sbjct: 206 PNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGL 265

Query: 144 -DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M E  + P+ V +N LI      G ++RAF    EM  +   + P   T   L+ A 
Sbjct: 266 FDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKK--GIMPSVSTYNLLVHAL 323

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G++  A ++ K + K  I      Y I IN  S+ G+ + A  ++++M  KG+ P  
Sbjct: 324 FMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTH 383

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
           V  ++LI       +++ A ++ ++  +QG+S  +I +++++ G C+N  N ++A  L +
Sbjct: 384 VTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANG-NVERAFMLLK 442

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    + P   T N L+   C   ++ +   +L +MK  G+ P+ I+Y+ L+    R+ 
Sbjct: 443 EMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRG 502

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           D++    +  +    G  P L+ +  +I
Sbjct: 503 DIKDAFXVRDEMLSIGFNPTLLTYNALI 530



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 46/290 (15%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+     +GR+ E  D++++M +KG++                             
Sbjct: 315 TYNLLVHALFMEGRMGEADDMIKEMRKKGII----------------------------- 345

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--- 143
              P   T+N+L++  +   +++ AF +   +   G++     YT+LI   ++  ++   
Sbjct: 346 ---PDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEA 402

Query: 144 DAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
           D +FE      V PD ++FNA+I     +G V+RAF +L EM+ +  P  PD +T   LM
Sbjct: 403 DDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVP--PDEVTFNTLM 460

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           +     G+V+ AR +   +    IK     Y   I+   + GD + A  V D+M   G  
Sbjct: 461 QGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFN 520

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           P  +  +ALI       + + A E+L+E  N+GIS    +Y SL+    N
Sbjct: 521 PTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGMGN 570



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 147/344 (42%), Gaps = 28/344 (8%)

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G++ +ARE    +     K     Y   I+  S  G+ E A  + D M  KG+ PD    
Sbjct: 187 GKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTY 246

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
            +LI      G++E A  +  +    G+    ++Y++L+    N  + ++A    + M  
Sbjct: 247 GSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVK 306

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             + P+VST N L+ AL    ++ +  +++ +M+  G+ P+ ITY+IL+    R  + + 
Sbjct: 307 KGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKR 366

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRR---------YEKA--RTLNEHVLSFNSG-R 432
              L ++    G+ P  V +  +I + SRR         +EK   + ++  V+ FN+   
Sbjct: 367 AFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMID 426

Query: 433 PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADAL 492
               N     A M+ +E +   ++P  EV    L           RE  VE   +  D +
Sbjct: 427 GHCANGNVERAFMLLKE-MDRKSVPPDEVTFNTL------MQGRCREGKVEEARMLLDEM 479

Query: 493 KRSNL-------CSLIDGFGEYD--PRAFSLLEEAASFGIVPCV 527
           K   +        +LI G+G       AF + +E  S G  P +
Sbjct: 480 KXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTL 523



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 135/299 (45%), Gaps = 31/299 (10%)

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           ++D++T   +  D + + + I F    GK++ A E +   +  G    ++SY++++   S
Sbjct: 163 LFDELT---LSRDRLSVKSSIVFDLLEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYS 219

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
           +  N + A  + + M+   ++P   T  +LI+ +C   +L +   +   M  +GL PN +
Sbjct: 220 SRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAV 279

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRYEKARTLNE- 423
           TY+ L+     K D+E       +  + G++P++  +  ++    M  R  E    + E 
Sbjct: 280 TYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEM 339

Query: 424 -------HVLSFN---SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL---- 469
                    +++N   +G  +  N   +  L  + E +  G  PT    + ++  L    
Sbjct: 340 RKKGIIPDAITYNILINGYSRCGNAKRAFDL--HNEMLSKGIEPTHVTYTSLIYVLSRRN 397

Query: 470 QLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP 525
           ++    D+ E++++  GVS D +      ++IDG    G  + RAF LL+E     + P
Sbjct: 398 RMKEADDLFEKILDQ-GVSPDVIM---FNAMIDGHCANGNVE-RAFMLLKEMDRKSVPP 451



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF----RFFKLVPNPTL 92
           R+G++ E   LL++M+ +G+   D + +    +    +  IK+AF        +  NPTL
Sbjct: 465 REGKVEEARMLLDEMKXRGI-KPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTL 523

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
            T+N L+     +++ + A ++L+ +   G+  D   Y +LI      G VD + E+
Sbjct: 524 LTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM---GNVDTLVED 577


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 159/341 (46%), Gaps = 21/341 (6%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-----Q 74
           D+   L SYN LI    R G  +E + L  ++  K L+     Y+      C++      
Sbjct: 342 DLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIA 401

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           K +K+      L P+  + TF +L+       +   A ++   +   GLK DC  YTT I
Sbjct: 402 KGMKDDMIKHGLCPD--VVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRI 459

Query: 135 TTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               K G     F        E   PD + +N LI    + G  D A +++ +M  E   
Sbjct: 460 VGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLE--G 517

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + PDH+T  +++ A   +G + +A EV+  + K  I  +   YT+ I+  +  G  +FA 
Sbjct: 518 IVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAK 577

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
             +D+M  KGV P+ +  +ALI        ++ A+ +  E +++G+S    +Y+ L+   
Sbjct: 578 KYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINEN 637

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           SN + WQ AL+LY+ M   ++KP   T +AL+  L    +L
Sbjct: 638 SNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLSKDYKL 678



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 182/396 (45%), Gaps = 21/396 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN L+     +G      +L+E M   GL      Y+      CK ++  +EA    + 
Sbjct: 244 SYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCK-KEMFEEANDLRRE 302

Query: 87  VPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +      PT+ T+N +M S+C   + S+ A + L ++    L  D   Y TLI   ++ G
Sbjct: 303 MLGRGALPTVVTYNTIMYSLCRLGRVSD-ARRYLDVMVNEDLMPDLVSYNTLIYGYSRLG 361

Query: 142 KV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
              +A+        +N+ P  V +N LI    ++G +D A  +  +M    H + PD +T
Sbjct: 362 NFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIK--HGLCPDVVT 419

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L++     G +  A+E++  +    +K     YT  I    + G+   A  + ++M 
Sbjct: 420 FTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMK 479

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            +G  PD +  + LI+     G  + A E++Q+ + +GI    ++Y+S++ A   +   +
Sbjct: 480 AEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLR 539

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA E++  M    + P+V T   LI +     +L    +   +M+  G+ PN ITY+ L+
Sbjct: 540 KAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALI 599

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
               +++ ++V   L ++ +  GV PN   +  +I 
Sbjct: 600 YGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILIN 635



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 147/328 (44%), Gaps = 27/328 (8%)

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           F+K+V N  L              D     +VL+L+++  +  + +   +++  C     
Sbjct: 160 FYKMVNNGLLP-------------DVRNCNRVLKLLKDKSMVNEVEEVYSVMIKC----- 201

Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  ++P  V FN ++ +  + G V RA +VL  M   +   DP+ ++   L+   +
Sbjct: 202 ------QIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVM--RMFGCDPNDVSYNVLVNGLS 253

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G+ DRA+E+ + +    +K +   Y   I    +   +E A  +  +M  +G +P  V
Sbjct: 254 GKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVV 313

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + ++      G+V  A   L    N+ +   ++SY++L+   S   N+ +AL L+  +
Sbjct: 314 TYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSEL 373

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           +S  L P+V T N LI   C    L     +  DM   GLCP+ +T++IL+    +  ++
Sbjct: 374 RSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNL 433

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKC-IIG 409
            +   L  +    G+ P+ + +   I+G
Sbjct: 434 PMAKELFDEMLSRGLKPDCIAYTTRIVG 461



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 157/395 (39%), Gaps = 54/395 (13%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H+YN LIR    +    E  DL  +M  +G L     Y+   +++C+  + + +A R+  
Sbjct: 278 HTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGR-VSDARRYLD 336

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           ++ N    P L ++N L+   +   +   A  +   ++   L      Y TLI    ++G
Sbjct: 337 VMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTG 396

Query: 142 KVD--------------------------------------AMFEN-----VKPDRVVFN 158
            +D                                       +F+      +KPD + + 
Sbjct: 397 NLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYT 456

Query: 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 218
             I    + G   +AF +  EM AE  P  PD IT   L+      G  D A E+ + + 
Sbjct: 457 TRIVGELKLGNPSKAFGMKEEMKAEGFP--PDLITYNVLINGLCKLGNFDDANELVQKMR 514

Query: 219 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278
              I      YT  I+    +G    A  V+ DM KKG+ P  V  + LI      G+++
Sbjct: 515 LEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLD 574

Query: 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338
            A +   E +++G+S  +I+Y++L+           A  L+  M+S  + P   T   LI
Sbjct: 575 FAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILI 634

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
               +       +++  DM    + P++ T+S L+
Sbjct: 635 NENSNLQYWQDALKLYKDMLDREIKPDSCTHSALM 669



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 172/454 (37%), Gaps = 86/454 (18%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFN 96
           + +C+ +   M   GLL  D     R   + K +  + E    + ++      PT+ TFN
Sbjct: 153 LEKCLMVFYKMVNNGLLP-DVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFN 211

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD------------ 144
            +M       +   A +VL +++  G   +   Y  L+   +  G+ D            
Sbjct: 212 TMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSML 271

Query: 145 -------------------AMFENVK------------PDRVVFNALITACGQSGAVDRA 173
                               MFE               P  V +N ++ +  + G V  A
Sbjct: 272 GLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDA 331

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
              L  M  E   + PD ++   L+   +  G    A  ++  +   N+  +   Y   I
Sbjct: 332 RRYLDVMVNE--DLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLI 389

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           +   +TG+ + A  + DDM K G+ PD V  + L+      G +  A E+  E  ++G+ 
Sbjct: 390 DGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLK 449

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC------DGDQL 347
              I+Y++ +       N  KA  + E MK+    P + T N LI  LC      D ++L
Sbjct: 450 PDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANEL 509

Query: 348 PKTM-----------------------------EVLSDMKSLGLCPNTITYSILLVACER 378
            + M                             EV SDM   G+ P+ +TY++L+ +   
Sbjct: 510 VQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAV 569

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           +  ++       + ++ GV PN++ +  +I G+C
Sbjct: 570 RGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLC 603



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 119/290 (41%), Gaps = 36/290 (12%)

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           VY  M K  + P  V  + ++D     G+V  A E+L   +  G     +SY+ L+   S
Sbjct: 194 VYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLS 253

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
               + +A EL E M  + LK +  T N LI   C  +   +  ++  +M   G  P  +
Sbjct: 254 GKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVV 313

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 427
           TY+ ++ +  R   V      L     + ++P+LV +  +I   SR    A         
Sbjct: 314 TYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAE-------- 365

Query: 428 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL--GCLQLPYNADIRERLVENL 485
                          AL+++ E      +P+V   + ++  GC     N DI + + +++
Sbjct: 366 ---------------ALLLFSELRSKNLVPSVVTYNTLIDGGCRT--GNLDIAKGMKDDM 408

Query: 486 ---GVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP-CVSF 529
              G+  D +       L+ GF +    P A  L +E  S G+ P C+++
Sbjct: 409 IKHGLCPDVV---TFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAY 455


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 181/374 (48%), Gaps = 16/374 (4%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA--FRFFKLVPNPTLSTFNMLM-SVCA 103
           LL++ME++G++  + VY+     +C + +       +R  +    P++ T+ +L+ ++C 
Sbjct: 55  LLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCK 114

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-------AMFEN-VKPDRV 155
           S++ S+ +  +L  + EAG   +   Y TLI    K G +D        M EN   PD  
Sbjct: 115 SARISDASL-ILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVF 173

Query: 156 VFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
            +N LI   C Q    D A  +L EM    +  +P+ IT   LM +   +G+   A  + 
Sbjct: 174 TYNILIDGYCKQERPQDGA-KLLQEMVK--YGCEPNFITYNTLMDSLVKSGKYIDAFNLA 230

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           +M+ + + K +   + + I+   + G  + A  ++  MT +G +PD    + +I  A  A
Sbjct: 231 QMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRA 290

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
            +++ A ++L+     G    +++Y+S++     A    +A E+YE +++      V T 
Sbjct: 291 NRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTC 350

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           + LI  LC   +L    ++L +M+  G  P+ + Y+IL+    + D ++  L   S+  +
Sbjct: 351 STLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLD 410

Query: 395 DGVIPNLVMFKCII 408
            G +P ++ +  +I
Sbjct: 411 KGCVPTVITYSIVI 424



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 96/457 (21%), Positives = 187/457 (40%), Gaps = 83/457 (18%)

Query: 74  QKAIKEAFRFFKL----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
           +K  +EA+  FK     + +P   T++ L++    ++D + A+++L  +++ G+     +
Sbjct: 11  KKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAV 70

Query: 130 YTTLITTCAKSGKVDAMFENVK-------------------------------------- 151
           Y T+I     +G+VD+   + +                                      
Sbjct: 71  YNTIIKGLCDNGRVDSALVHYRDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIE 130

Query: 152 ----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQ 206
               P+ V +N LI    + G +D A  +  +M    +   PD  T   L+   C     
Sbjct: 131 AGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLE--NSCSPDVFTYNILIDGYCKQERP 188

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            D A+ + +M+ KY  +     Y   ++   ++G +  A ++   M ++   P     + 
Sbjct: 189 QDGAKLLQEMV-KYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNL 247

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           +ID     G+++ A+E+ Q   ++G    I +Y+ ++     A     A +L E M    
Sbjct: 248 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 307

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVE 383
             P V T N++++ LC   Q+ +  EV   +++ G   + +T S L   L    R DD E
Sbjct: 308 CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAE 367

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
               LL + + +G  P++V +  +I G C     KA  L++                   
Sbjct: 368 ---KLLREMERNGSAPDVVAYTILIHGFC-----KADQLDK------------------- 400

Query: 443 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE 479
           +L  + E +  G +PTV   S V+   +L  +A +R+
Sbjct: 401 SLAFFSEMLDKGCVPTVITYSIVID--KLCKSARVRD 435


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 171/402 (42%), Gaps = 20/402 (4%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++ L  ++R  R G   E + LLE M RKG  + D +   +      + + I +A R  +
Sbjct: 90  TQMLKIFHRSCRSGNYIESLHLLETMVRKGY-NPDVILCTKLIKGFFTLRNIPKAVRVME 148

Query: 86  LVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++     P +  +N L++        + A +VL  ++      D   Y  +I +    GK
Sbjct: 149 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208

Query: 143 VDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +D         + +N +P  + +  LI A    G VD A  ++ EM +    + PD  T 
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS--RGLKPDMFTY 266

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDD 251
             +++     G VDRA   ++M+    +KG  P+V  Y I +      G WE    +   
Sbjct: 267 NTIIRGMCKEGMVDRA---FEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTK 323

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M  +   P+ V  S LI      GK+E A  +L+  K +G++    SY  L+ A      
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
              A+E  E M S    P +   N ++  LC   +  + +E+   +  +G  PN+ +Y+ 
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 443

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +  A     D    L ++ +   +G+ P+ + +  +I    R
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCR 485



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 183/419 (43%), Gaps = 28/419 (6%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAF 81
           + +YN LI    +  RI +   +L+ M  K        Y+    ++C   K   A+K   
Sbjct: 158 VFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLN 217

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +       PT+ T+ +L+         + A +++  +   GLK D   Y T+I    K G
Sbjct: 218 QLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG 277

Query: 142 KVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            VD  FE V+        PD + +N L+ A    G  +    ++ +M +E    DP+ +T
Sbjct: 278 MVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE--KCDPNVVT 335

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT----IAINCCSQTGDWEFACSVY 249
              L+      G+++ A  + K++ +  +  TP+ Y+    IA  C  + G  + A    
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGL--TPDAYSYDPLIAAFC--REGRLDVAIEFL 391

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           + M   G +PD V  + ++      GK + A EI  +    G S    SY+++  A  ++
Sbjct: 392 ETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSS 451

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
            +  +AL +   M S  + P   T N++I+ LC    + +  E+L DM+S    P+ +TY
Sbjct: 452 GDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTY 511

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI---IGMCSRRYEKARTLNEHV 425
           +I+L+   +   +E  + +L     +G  PN   +  +   IG    R E     N+ V
Sbjct: 512 NIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 162/355 (45%), Gaps = 14/355 (3%)

Query: 82  RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +  KL   P + T N L++  C  ++ S+    V ++V E G + D   + TLI    + 
Sbjct: 141 KMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMV-EMGYQPDSFTFNTLIHGLFRH 199

Query: 141 GK-------VDAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            +       VD M  +  +PD V +  ++    + G +D A  +L +M  E   ++P  +
Sbjct: 200 NRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM--EQGKIEPGVV 257

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
               ++ A  N   V+ A  ++  +    I+     Y   I C    G W  A  +  DM
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            ++ + P+ V  SALID     GK+  A ++  E   + I   I +YSSL+         
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            +A  ++E M S    P V T N LI   C   ++ + ME+  +M   GL  NT+TY+ L
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
           +    +  + +   ++  Q   DGV+P+++ +  ++ G+C+  + E A  + E++
Sbjct: 438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYL 492



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 176/397 (44%), Gaps = 17/397 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L R  R SE + L++ M  KG    D V +    N    +  I  A    K +      P
Sbjct: 196 LFRHNRASEAVALVDRMVVKGC-QPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEP 254

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------- 142
            +  +N ++    + K+   A  +   +   G++ +   Y +LI      G+        
Sbjct: 255 GVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLL 314

Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
            D +   + P+ V F+ALI A  + G +  A  +  EM      +DPD  T  +L+    
Sbjct: 315 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR--SIDPDIFTYSSLINGFC 372

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              ++D A+ +++++   +       Y   I    +    +    ++ +M+++G++ + V
Sbjct: 373 MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEH 321
             + LI     A + + A  + ++  + G+   I++YS L+ G C+N K  + AL ++E+
Sbjct: 433 TYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGK-VETALVVFEY 491

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           ++  K++P + T N +I  +C   ++    ++   +   G+ PN +TY+ ++    RK  
Sbjct: 492 LQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGL 551

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
            E    L  + KE+G +P+   +  +I    R  +KA
Sbjct: 552 KEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKA 588



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/406 (21%), Positives = 175/406 (43%), Gaps = 16/406 (3%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKA 76
           Y  D+       N      RIS+ + L+  M   G        + + H   F   ++ +A
Sbjct: 147 YEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHG-LFRHNRASEA 205

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           +    R       P L T+ ++++      D + A  +L+ +++  ++    +Y T+I  
Sbjct: 206 VALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA 265

Query: 137 -CAKSGKVDAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
            C      DA+        + ++P+ V +N+LI      G    A  +L++M      ++
Sbjct: 266 LCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER--KIN 323

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ +T  AL+ A    G++  A ++Y  + K +I      Y+  IN        + A  +
Sbjct: 324 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 383

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           ++ M  K   P+ V  + LI     A +V+   E+ +E   +G+    ++Y++L+     
Sbjct: 384 FELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 443

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           A+    A  +++ M S  + P + T + L+  LC+  ++   + V   ++   + P+  T
Sbjct: 444 ARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYT 503

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           Y+I++    +   VE G  L       GV PN+V +  ++ G C +
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 549



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 156/375 (41%), Gaps = 52/375 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G I   + LL+ ME +G ++   V +    +   + K + +A   F  + N   
Sbjct: 229 NGLCKRGDIDLALSLLKKME-QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGI 287

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P + T+N L+    +      A ++L  + E  +  +   ++ LI    K GK+     
Sbjct: 288 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 347

Query: 144 --DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             D M + ++ PD   +++LI        +D A  +   M ++     P+ +T   L+K 
Sbjct: 348 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK--DCFPNVVTYNTLIKG 405

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              A +VD   E+++ + +  + G    YT  I+   Q  + + A  V+  M   GV+PD
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPD 465

Query: 261 EVFLSALIDFAGH-----------------------------------AGKVEAAFEILQ 285
            +  S L+D   +                                   AGKVE  +++  
Sbjct: 466 IMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFC 525

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDG 344
               +G+   +++Y+++M         ++A  L+  MK     P   T N LI A L DG
Sbjct: 526 SLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDG 585

Query: 345 DQLPKTMEVLSDMKS 359
           D+   + E++ +M+S
Sbjct: 586 DK-AASAELIREMRS 599



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 79/170 (46%), Gaps = 1/170 (0%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A +++ DM K    P  V  S L+       K +    + ++ +N GIS  + +YS L+ 
Sbjct: 65  AVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILIN 124

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                     AL +   M  +  +P + T+N+L+   C G+++   + ++  M  +G  P
Sbjct: 125 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQP 184

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           ++ T++ L+    R +     + L+ +    G  P+LV +  ++ G+C R
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKR 234



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 116/272 (42%), Gaps = 13/272 (4%)

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D A ++  +M  +  P  P  +    L+ A A   + D    + + +    I      Y
Sbjct: 62  LDDAVNLFGDM-VKSRPF-PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTY 119

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           +I INC  +      A +V   M K G  PD V L++L++   H  ++  A  ++ +   
Sbjct: 120 SILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE 179

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            G      ++++L+          +A+ L + M     +P + T   ++  LC    +  
Sbjct: 180 MGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDL 239

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            + +L  M+   + P  + Y+ ++ A     +V   L L ++    G+ PN+V +  +I 
Sbjct: 240 ALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 299

Query: 410 -MCSR-RYEKA---------RTLNEHVLSFNS 430
            +C+  R+  A         R +N +V++F++
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 21/342 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
           +YN LIR     GR S+   LL DM ERK  ++ + V  +   +    +  + EA + + 
Sbjct: 293 TYNSLIRCLCNYGRWSDASRLLSDMIERK--INPNVVTFSALIDAFVKEGKLVEAEKLYD 350

Query: 85  ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K   +P + T++ L++        + A  +  L+       +   Y TLI    K+ 
Sbjct: 351 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 410

Query: 142 KVDAMFENVKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +VD   E  +         + V +  LI    Q+   D A  V  +M ++   V PD +T
Sbjct: 411 RVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSD--GVLPDIMT 468

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+    N G+V+ A  V++ + +  ++     Y I I    + G  E    ++  ++
Sbjct: 469 YSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 528

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            KGV P+ V  + ++      G  E A  + +E K +G      +Y++L+ A     +  
Sbjct: 529 LKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKA 588

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
            + EL   M+S +     ST+  +   L DG      +++LS
Sbjct: 589 ASAELIREMRSCRFVGDASTIGLVTNMLHDGRLDKSFLKMLS 630


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 173/395 (43%), Gaps = 19/395 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           L    R    +  L +M  + +   D +       +CK  K   A++  FR  +      
Sbjct: 498 LCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGAN 557

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF---- 147
           L T N L+     + + + A ++L+ + E G   D   Y TLI+ C K GKV+  F    
Sbjct: 558 LVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRG 617

Query: 148 ----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
               + ++PD   +N LI    + G +D A ++  E  +    + P+  T G ++     
Sbjct: 618 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSR--DLVPNVYTYGVMIDGYCK 675

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           A +++   +++  +   N++    VY   I    + G+   A  ++DDM  KG+ P    
Sbjct: 676 ADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTAT 735

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            S+LI    + G++E A  ++ E + +G+   ++ Y++L+G         K + + + M 
Sbjct: 736 YSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMS 795

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           S  + P   T   +I        +    ++L +M   G+ P+T+TY++L     ++  +E
Sbjct: 796 SYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIE 855

Query: 384 VGLMLLSQAKEDGVIPN--LVMFKCIIGMCSRRYE 416
            G +L     EDGV  N  L +       C+RR +
Sbjct: 856 EGKLL----AEDGVGFNSPLFLIHEAFRACTRRVD 886



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 97/422 (22%), Positives = 185/422 (43%), Gaps = 15/422 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVP--- 88
           N   + G++ + I L  DME+ G+      Y+     +CK    + EAFRF  K+V    
Sbjct: 321 NAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCK-HGNLDEAFRFKEKMVKDGV 379

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
           N TL T+++L++     +    A  VL+   E G   +  +Y TLI    K G +     
Sbjct: 380 NATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALR 439

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              D + + + P+ V  N++I    + G +++A  +L EM +    ++P   T   +   
Sbjct: 440 IRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTT-IIHWL 498

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           C N+      R + +M+ + N++    + T  +    + G    A  ++  + +KG   +
Sbjct: 499 CMNSRFESALRFLREMLLR-NMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGAN 557

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  +ALI      G ++ A  +L++   +G  +  I+Y++L+  C      ++  +L  
Sbjct: 558 LVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRG 617

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    ++P   T N LI  +C   +L + + + ++ KS  L PN  TY +++    + D
Sbjct: 618 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKAD 677

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 440
            +E G  L ++     +  N V++  +I    R          H    + G P     ++
Sbjct: 678 KIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYS 737

Query: 441 SL 442
           SL
Sbjct: 738 SL 739



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 164/399 (41%), Gaps = 58/399 (14%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           VY  +F NV       + A   F+ + N    PT+ T   L+S    + + E ++ V   
Sbjct: 250 VYCTQFRNV-----GFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFET 304

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGA 169
           +++ G+  D  L++T I    K GKV+   +         V P+ V +N LI    + G 
Sbjct: 305 MRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGN 363

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D AF    +M  +   V+   IT   L+       + + A  V K   +        VY
Sbjct: 364 LDEAFRFKEKMVKD--GVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVY 421

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
              I+   + G+   A  +  DM  KG+ P+ V L+++I      G++E A  IL+E  +
Sbjct: 422 NTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLS 481

Query: 290 QGISVGIISYSSLM------------------------------------GACSNAKNWQ 313
           +G S+   ++++++                                    G C   K+  
Sbjct: 482 RGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKH-S 540

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A+EL+  +        + T NALI  LC    + + + +L  M   G   + ITY+ L+
Sbjct: 541 DAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLI 600

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             C ++  VE G  L  +  + G+ P+   +  +I GMC
Sbjct: 601 SGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMC 639



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 8/245 (3%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY--TIAINCCSQTGDWEF 244
           V P   T   L+ +   A +++++  V++ + +     +P+VY  + AIN   + G  E 
Sbjct: 275 VFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ---GVSPDVYLFSTAINAFCKGGKVED 331

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  ++ DM K GV P+ V  + LI      G ++ AF   ++    G++  +I+YS L+ 
Sbjct: 332 AIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLIN 391

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                + + +A  + +        P     N LI   C    L   + +  DM S G+ P
Sbjct: 392 GLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINP 451

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA-RTL 421
           N++T + ++    +   +E    +L +    G   N   F  II  +C + R+E A R L
Sbjct: 452 NSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFL 511

Query: 422 NEHVL 426
            E +L
Sbjct: 512 REMLL 516


>gi|7413543|emb|CAB86023.1| putative protein [Arabidopsis thaliana]
          Length = 880

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 183/416 (43%), Gaps = 26/416 (6%)

Query: 19  ANYAHDVSEQLHS------YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR-- 66
           A+Y  D ++++H       Y ++I    +   +     L+ +ME +G+     +YH    
Sbjct: 398 ADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMD 457

Query: 67  -FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            +  V   +K +    R  +    PT+ T+  L+++         A +V R+++E G+K 
Sbjct: 458 GYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKH 517

Query: 126 DCKLYTTLITTCAK---SGKVDAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVL 177
           + K Y+ +I    K        A+FE++     KPD +++N +I+A    G +DRA   +
Sbjct: 518 NLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTV 577

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            EM    H   P   T   ++   A +G + R+ EV+ M+ +     T   +   IN   
Sbjct: 578 KEMQKLRH--RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLV 635

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           +      A  + D+MT  GV  +E   + ++      G    AFE     +N+G+ V I 
Sbjct: 636 EKRQ---AVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIF 692

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +Y +L+ AC  +   Q AL + + M +  +       N LI        + +  +++  M
Sbjct: 693 TYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM 752

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           K  G+ P+  TY+  + AC +  D+      + + +  GV PN+  +  +I   +R
Sbjct: 753 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWAR 808



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 133/322 (41%), Gaps = 38/322 (11%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK 151
           L T++M+++     KD   AF V   + + G+K D  LY  +I+     G +D   + VK
Sbjct: 519 LKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVK 578

Query: 152 --------PDRVVFNALITACGQSGAVDRAFDVLAEMN-----AEVHP------------ 186
                   P    F  +I    +SG + R+ +V   M        VH             
Sbjct: 579 EMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKR 638

Query: 187 -------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
                        V  +  T   +M+  A+ G   +A E +  +    +      Y   +
Sbjct: 639 QAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALL 698

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
             C ++G  + A +V  +M+ + +  +    + LID     G V  A +++Q+ K +G+ 
Sbjct: 699 KACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVK 758

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
             I +Y+S + ACS A +  +A +  E M+++ +KP + T   LI          K +  
Sbjct: 759 PDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSC 818

Query: 354 LSDMKSLGLCPNTITYSILLVA 375
             +MK++G+ P+   Y  LL +
Sbjct: 819 YEEMKAMGIKPDKAVYHCLLTS 840



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 147/330 (44%), Gaps = 16/330 (4%)

Query: 25  VSEQLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAI 77
           V   L +Y    N  ++    +    + EDM ++G+     +Y+   + F  +    +AI
Sbjct: 515 VKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAI 574

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           +      KL   PT  TF  ++   A S D   + +V  +++  G       +  LI   
Sbjct: 575 QTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGL 634

Query: 138 AKSGK----VDAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            +  +    +D M    V  +   +  ++      G   +AF+    +  E   +D D  
Sbjct: 635 VEKRQAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNE--GLDVDIF 692

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDD 251
           T  AL+KAC  +G++  A  V K +   NI     VY I I+  ++ GD WE A  +   
Sbjct: 693 TYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWE-AADLIQQ 751

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M K+GV PD    ++ I     AG +  A + ++E +  G+   I +Y++L+   + A  
Sbjct: 752 MKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASL 811

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITAL 341
            +KAL  YE MK++ +KP  +  + L+T+L
Sbjct: 812 PEKALSCYEEMKAMGIKPDKAVYHCLLTSL 841



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/359 (18%), Positives = 148/359 (41%), Gaps = 24/359 (6%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P+ + F +++       D   A +    ++  G+    ++YT+LI   A    +
Sbjct: 301 FEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDM 360

Query: 144 DAMF--------ENVKPDRVVFNALI---TACGQSGAVDRAFD----VLAEMNAEVHPVD 188
           D           E ++   V ++ ++   +  G + A D  FD    +   +NA ++   
Sbjct: 361 DEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIY--- 417

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
                 G ++ A      ++RA  + + + +  I     +Y   ++  +   D +    V
Sbjct: 418 ------GKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVV 471

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +  + + G  P  V    LI+     GK+  A E+ +  K +G+   + +YS ++     
Sbjct: 472 FKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVK 531

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            K+W  A  ++E M    +KP V   N +I+A C    + + ++ + +M+ L   P T T
Sbjct: 532 LKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRT 591

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 427
           +  ++    +  D+   L +    +  G +P +  F  +I     + +    L+E  L+
Sbjct: 592 FMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEILDEMTLA 650



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/433 (19%), Positives = 165/433 (38%), Gaps = 108/433 (24%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
            PT   +  L+   A  +D + A   +R ++E G++     Y+ ++   +K+G  +A   
Sbjct: 341 TPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADY 400

Query: 146 MFENVKPDRVVFNA-----LITACGQSGAVDRAFDVLAEMNAE--------VHPV----- 187
            F+  K      NA     +I A  Q+  ++RA  ++ EM  E         H +     
Sbjct: 401 WFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYT 460

Query: 188 --------------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                                P  +T G L+      G++ +A EV +++ +  +K   +
Sbjct: 461 MVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLK 520

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y++ IN   +  DW  A +V++DM K+G+ PD +  + +I      G ++ A + ++E 
Sbjct: 521 TYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEM 580

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ- 346
           +         ++  ++   + + + +++LE+++ M+     PTV T N LI  L +  Q 
Sbjct: 581 QKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQA 640

Query: 347 -------------------------------LPKTMEVLSDMKSLGLCPNTITYSILLVA 375
                                            K  E  + +++ GL  +  TY  LL A
Sbjct: 641 VEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKA 700

Query: 376 C-----------------------------------ERKDDVEVGLMLLSQAKEDGVIPN 400
           C                                    R+ DV     L+ Q K++GV P+
Sbjct: 701 CCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPD 760

Query: 401 LVMFKCIIGMCSR 413
           +  +   I  CS+
Sbjct: 761 IHTYTSFISACSK 773



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 44/165 (26%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G + E  DL++ M+++G+                     
Sbjct: 719 ARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV--------------------- 757

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   +S C+ + D   A Q +  ++  G+K + K YTTLI   
Sbjct: 758 -----------KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 806

Query: 138 AKSG---KVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAF 174
           A++    K  + +E      +KPD+ V++ L+T+     ++  A+
Sbjct: 807 ARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAY 851


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 95/425 (22%), Positives = 189/425 (44%), Gaps = 56/425 (13%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK----- 78
            ++ YN +I    ++G + E + +LE+M+  G+      Y       CK     K     
Sbjct: 324 NVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLI 383

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           E  ++  +   P+L +++ L       + S+ +  + R +  AG K D   Y+ LI    
Sbjct: 384 EEMKYSNM--EPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFC 441

Query: 139 KSGKVDAMFE--------NVKPDRVVF--------------------------------- 157
             G +D+  +        N+ PD   F                                 
Sbjct: 442 MQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIA 501

Query: 158 --NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
             N +I A  + G V+ A +++ EM  +   + P+  T  A++       + +RA E++ 
Sbjct: 502 TCNVIIDAHCREGRVEEALNLMNEM--QTQGIFPNLFTYNAVINRLCKERKSERALELFP 559

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
           ++ K N+  +  VY+  I+  ++  + + A  +Y  M K GV PD V  + LI+   H  
Sbjct: 560 LMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRS 619

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           ++  A+ + ++    G++   ISY+S++       + +KA  L+  M      PTV T  
Sbjct: 620 RMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYT 679

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
           +L+   C  +++     ++ +MK  G+ P+ +TY++L+ A  R+ +++  L +L++ KE+
Sbjct: 680 SLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKEN 739

Query: 396 GVIPN 400
           GV+P+
Sbjct: 740 GVLPD 744



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 106/523 (20%), Positives = 227/523 (43%), Gaps = 47/523 (8%)

Query: 43  ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP----TLSTFNML 98
           +  ++LE+MER G       Y    + +C+    ++ A  F + + +      +  +N +
Sbjct: 273 QATEILEEMERNGESPTVVTYSTYIYGLCRV-GYVESALDFVRSLISANGLVNVYCYNAI 331

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--------MFENV 150
           +       + + A +VL  ++  G+  D   Y+ LI    K G V+          + N+
Sbjct: 332 IHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNM 391

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           +P  V +++L     +    D + D+  ++ A  +  D    +I  L+K     G +D A
Sbjct: 392 EPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSI--LIKGFCMQGDLDSA 449

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            ++ + + + N+   P  +   ++   + G W  A   ++ M + G++P     + +ID 
Sbjct: 450 HKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDA 509

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G+VE A  ++ E + QGI   + +Y++++      +  ++ALEL+  M    + P+
Sbjct: 510 HCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPS 569

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLL 389
           V   + LI          K + + + M  +G+ P+ + Y+IL+ + C R    E    L 
Sbjct: 570 VVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCE-AYNLF 628

Query: 390 SQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYR 448
            +  E+G+ P+ + +  +I G C                      +I +   + AL  + 
Sbjct: 629 KKMTENGMTPDKISYTSVIAGFC----------------------RIGDMRKAWAL--FN 664

Query: 449 EAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGFG 505
           E +  G +PTV   + ++         DI + L++ +   G++ D +  + L +     G
Sbjct: 665 EMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRG 724

Query: 506 EYDPRAFSLLEEAASFGIVP-CVSFKEIPVVVDARKLEIHTAK 547
             D +A  +L E    G++P  +++  +  ++ A+KL+   +K
Sbjct: 725 NLD-KALEMLNEMKENGVLPDHMTYMMLEWLLKAKKLKTRRSK 766



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 155/356 (43%), Gaps = 35/356 (9%)

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           I    L+K  A    ++ A +V+    K  ++ +       + C ++    EF  S++++
Sbjct: 180 IVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEE 239

Query: 252 MTKKGVIPDEVFLSALIDF--AGHAGKVE----AAFEILQEAKNQGISVGIISYSSLMGA 305
           M   G  P+    + +++F   G+ G+ +     A EIL+E +  G S  +++YS+ +  
Sbjct: 240 MKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYG 299

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
                  + AL+    + S      V   NA+I  LC   +L + ++VL +MKS G+ P+
Sbjct: 300 LCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPD 359

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEH 424
             TYSIL+    ++ DVE GL L+ + K   + P+LV +  +  G+C +R          
Sbjct: 360 VYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKR---------- 409

Query: 425 VLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN 484
                          + ++L ++R+   AG        S ++    +  + D   +L+E 
Sbjct: 410 --------------LSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEE 455

Query: 485 LGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCVSFKEIPVVVDA 538
           +  +  A   SN  SL+ GF +      A          GI+P  S     V++DA
Sbjct: 456 MVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILP--SIATCNVIIDA 509


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 181/404 (44%), Gaps = 25/404 (6%)

Query: 24  DVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D      +YN +I      GR+ E   +L++ME   L       +     +CK++K ++E
Sbjct: 249 DAEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARK-LEE 307

Query: 80  AFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A++ F+       NP   T+  L+         + A+++   + +AG  A+  +YT+LI 
Sbjct: 308 AYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIR 367

Query: 136 TCAKSGKVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
                G+ +    +F+ +     KPD  + N  +    ++G V++   +  ++ +  +  
Sbjct: 368 NFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRS--YGF 425

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEF 244
            PD  +   L+     AGQ   ARE   + H    +G       Y   ++   ++G    
Sbjct: 426 LPDVRSYSILIHGLTKAGQ---ARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHK 482

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  + ++M +K V P      A++D      +++ A+ + +EAK++GI + ++ YSSL+ 
Sbjct: 483 AYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLID 542

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                    +A  + E M    L P V T N+L+ AL   +++ + +     MK +   P
Sbjct: 543 GFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPP 602

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           NT TYSIL+    R        +     ++ G++PN+V +  +I
Sbjct: 603 NTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 646



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 86/390 (22%), Positives = 182/390 (46%), Gaps = 19/390 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----- 87
           +RL +  ++ E   + E   ++G  + D V +    +    +  + EA+R F+ +     
Sbjct: 297 DRLCKARKLEEAYKIFESASQRGC-NPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGH 355

Query: 88  -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA- 145
             NP + T +++ +     +  +G  +V + +   G K D  L  T +    K+G+V+  
Sbjct: 356 NANPVVYT-SLIRNFFIHGRKEDG-HKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKG 413

Query: 146 --MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
             +FE+++     PD   ++ LI    ++G      ++   M  +   +D       A++
Sbjct: 414 RMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR--AYNAVV 471

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                +G+V +A E+ + + +  ++ T   Y   ++  ++    + A  ++++   KG+ 
Sbjct: 472 DGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIE 531

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
            + V  S+LID  G  G+++ A+ IL+E   +G++  + +++SL+ A   A+   +AL  
Sbjct: 532 LNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVC 591

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++ MK +K  P   T + LI  LC   +  K      DM+  GL PN +TY+ ++    +
Sbjct: 592 FQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAK 651

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             ++     L  + K +G IP+   F  +I
Sbjct: 652 VGNITDAYSLFERFKANGGIPDAASFNALI 681



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/391 (21%), Positives = 160/391 (40%), Gaps = 52/391 (13%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +L   P  S + +L+   A ++  E A ++LR +QE G +    L+TTL+   A+ G+V 
Sbjct: 38  RLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVA 97

Query: 145 ---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
              A+ + VK     PD V++N  I   G++G VD A     E+ A+   + PD ++  +
Sbjct: 98  DALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQ--GLKPDDVSYTS 155

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++     AG++  A E++  +           Y   I      G +E A  + + + ++G
Sbjct: 156 MIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERG 215

Query: 257 VIPDEVFLSAL----------------------------------IDFAGHAGKVEAAFE 282
            IP  V  +++                                  ID     G+VE A+ 
Sbjct: 216 CIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNSSTYNIIIDMLCLGGRVEEAYR 275

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           IL E ++  +   +++ + ++     A+  ++A +++E        P   T  +LI  L 
Sbjct: 276 ILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLG 335

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VACERKDDVEVGLMLLSQAKEDGVIP 399
              Q+ +   +   M   G   N + Y+ L+       RK+D   G  +  +    G  P
Sbjct: 336 KKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKED---GHKVFKELIRRGCKP 392

Query: 400 NLVMFKCIIGMCSR--RYEKARTLNEHVLSF 428
           +L +    +    +    EK R + E + S+
Sbjct: 393 DLTLLNTYMDCVFKAGEVEKGRMIFEDIRSY 423



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 144/361 (39%), Gaps = 54/361 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFKLVPNPT 91
           L ++G++ E   L E M   G      VY +    FF   + +   K      +    P 
Sbjct: 334 LGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPD 393

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDAMFE 148
           L+  N  M     + + E    +   ++  G   D + Y+ LI    K+G+      +F 
Sbjct: 394 LTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFH 453

Query: 149 NVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            +K      D   +NA++    +SG V +A+++L EM  +   V P   T GA++   A 
Sbjct: 454 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC--VQPTVATYGAIVDGLA- 510

Query: 204 AGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             ++DR  E Y +  +   KG      +Y+  I+   + G  + A  + ++M KKG+ P+
Sbjct: 511 --KIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 568

Query: 261 EVFLSALIDFAGHA-----------------------------------GKVEAAFEILQ 285
               ++L+D    A                                    K   AF   Q
Sbjct: 569 VYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQ 628

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           + + QG+   +++Y++++   +   N   A  L+E  K+    P  ++ NALI  + + +
Sbjct: 629 DMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNAN 688

Query: 346 Q 346
           +
Sbjct: 689 R 689



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 132/298 (44%), Gaps = 18/298 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           + + G + +   + ED+   G L   + Y      + K+ +A +E    F  +     + 
Sbjct: 404 VFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQA-RETSNIFHAMKQQGFAL 462

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MF 147
               +N ++     S     A+++L  ++E  ++     Y  ++   AK  ++D    +F
Sbjct: 463 DARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLF 522

Query: 148 ENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           E  K      + V++++LI   G+ G +D A+ +L EM  +   + P+  T  +L+ A  
Sbjct: 523 EEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK--GLTPNVYTWNSLLDALV 580

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            A +++ A   ++ + +         Y+I IN   +   +  A   + DM K+G++P+ V
Sbjct: 581 KAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVV 640

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
             + +I      G +  A+ + +  K  G      S+++L+   SNA    +A+E Y+
Sbjct: 641 TYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNA---NRAMEAYQ 695



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/212 (21%), Positives = 87/212 (41%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L  A   A ++D A     ++ +   +     YT+ I   ++    E A  +   M + G
Sbjct: 16  LAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVG 75

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
                   + L+      G+V  A  ++ E K   +   I+ Y+  +     A N   A 
Sbjct: 76  YEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAC 135

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           + +  +K+  LKP   +  ++I  LC   +L +  E+ + M++    P    Y+ +++  
Sbjct: 136 KFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGY 195

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                 E    LL + +E G IP++V F  I+
Sbjct: 196 GSAGRFEDAYKLLERLRERGCIPSVVSFNSIL 227


>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
 gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
          Length = 599

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 179/382 (46%), Gaps = 43/382 (11%)

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           + +A  EA R   + PN  +  +  L+   A ++D EGA      +   G++ +  ++ +
Sbjct: 35  AARATFEAMRASHIKPN--VHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCS 92

Query: 133 LITTCAKSGKVDAM--------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMN--- 181
           +I+  A +G  +A          EN+ P  +V+N+++ A  Q+G ++    +LA+M    
Sbjct: 93  IISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEG 152

Query: 182 ---------------AEVHP---------------VDPDHITIGALMKACANAGQVDRAR 211
                          AE+                 + P   T G ++K    AG + +A 
Sbjct: 153 FQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGNMAKAL 212

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           ++ + + K+ +     +Y + ++  ++ GD+  A  V++DM   G+ PD V  + L+   
Sbjct: 213 DILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAF 272

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
             AG+++ A  +L+  +   +   I +Y+S++       N QKALE+++ +K+  L+P V
Sbjct: 273 CKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGV 332

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            + N+L++ L    Q+     +L++M + G+ PN  +Y+ L     R  DVE    +  +
Sbjct: 333 VSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALTEGYARAGDVEKAFGMFQR 392

Query: 392 AKEDGVIPNLVMFKCIIGMCSR 413
            K++ +  ++V +  ++  C +
Sbjct: 393 MKKENLAIDIVAYGALLKACCK 414



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 177/392 (45%), Gaps = 17/392 (4%)

Query: 32  YNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFF 84
           YN +++     G +     LL  ME +G      +Y      F  +   +K +    R  
Sbjct: 125 YNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLK 184

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
               +PT +T+  ++ +   + +   A  +L  + + G+  +  +Y  ++   A+ G   
Sbjct: 185 ACGLSPTAATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFT 244

Query: 145 AMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           A F+         +KPD V++N L+ A  ++G +D+A  VL   N E + + P   T  +
Sbjct: 245 AAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLE--NIEANRLLPTIETYTS 302

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++      G + +A EV+  I    ++     Y   ++  ++    E A  + ++M   G
Sbjct: 303 ILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANG 362

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V+P+E   +AL +    AG VE AF + Q  K + +++ I++Y +L+ AC  +   Q+A 
Sbjct: 363 VVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAA 422

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           E+++ +    LK    T   ++       +L K  ++L+DM+  G   +TI Y+  + AC
Sbjct: 423 EVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYTSFIKAC 482

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            R  D E     L+  +E  +  N   +  +I
Sbjct: 483 FRSGDTEEVTETLAVMREKKLEVNARTYTTLI 514



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 140/316 (44%), Gaps = 13/316 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           R G  +    + EDM   GL     +Y+      CK+ +  K       +  N   PT+ 
Sbjct: 239 RGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIE 298

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-------AM 146
           T+  ++       + + A +V   ++ AGL+     Y +L++  AK+ +++        M
Sbjct: 299 TYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEM 358

Query: 147 FEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             N V P+   + AL     ++G V++AF +   M  E   +D   +  GAL+KAC  +G
Sbjct: 359 LANGVVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDI--VAYGALLKACCKSG 416

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            + RA EV++ I    +K     Y   ++  ++ G+   A  + +DM K G   D +  +
Sbjct: 417 AMQRAAEVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLNDMQKHGFHLDTICYT 476

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           + I     +G  E   E L   + + + V   +Y++L+     A +  +A+  YE  K+ 
Sbjct: 477 SFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAISCYEQAKAS 536

Query: 326 KLKPTVSTMNALITAL 341
            L+   +  N L++ L
Sbjct: 537 GLQLDSALSNCLLSGL 552



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 131/324 (40%), Gaps = 51/324 (15%)

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           G L+   A  G    AR  ++ +   +IK    +YT  I+  ++  D E A +  ++M  
Sbjct: 21  GLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLS 80

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ- 313
           +G+  +E    ++I     AG  EAA    ++ K + +  G I Y+S++ A   A N + 
Sbjct: 81  QGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMET 140

Query: 314 ----------------------------------KALELYEHMKSIKLKPTVSTMNALIT 339
                                             K L  +  +K+  L PT +T   ++ 
Sbjct: 141 VEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVK 200

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
                  + K +++L +M   G+ PN + Y++++    R  D      +       G+ P
Sbjct: 201 LFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKP 260

Query: 400 NLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALM 445
           ++V++  ++   C + R +KA  + E++ + N   P IE  +TS+            AL 
Sbjct: 261 DIVIYNILVHAFCKAGRMDKALGVLENIEA-NRLLPTIET-YTSILDGYVKGGNIQKALE 318

Query: 446 VYREAIVAGTIPTVEVVSKVLGCL 469
           V+     AG  P V   + +L  L
Sbjct: 319 VFDRIKTAGLRPGVVSYNSLLSGL 342


>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
 gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
          Length = 760

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 153/344 (44%), Gaps = 31/344 (9%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           K  KA+ E F   K+V  P L  +N ++  C+   D   A ++ R + E G+        
Sbjct: 171 KLAKAV-EIFEAMKVVCKPNLVVYNAVIDACSKGGDYPTALRIFREMLEQGMS------- 222

Query: 132 TLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
                               PDR+ FN LI+A G++   +    + AEM  E   +  D 
Sbjct: 223 --------------------PDRITFNTLISAAGRANRWEECDRIFAEM--EERGIARDD 260

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYD 250
           +T   L+      GQ+     + + + K + I+ +   Y+  I+  ++ G    A +++ 
Sbjct: 261 VTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQ 320

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M  + V PD +  + ++D     G  + A  I +  +  G +  I++Y++L+ +     
Sbjct: 321 EMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQG 380

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            +++A+ L E MK     P + T +ALI A C        M +  D+K  GL P+ + YS
Sbjct: 381 KFREAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYS 440

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
            L+  C +    +  L LL +  ++G+ PN++ +  ++    R+
Sbjct: 441 TLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQ 484



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 171/413 (41%), Gaps = 59/413 (14%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI    R  R  EC  +  +ME +G+   D  Y                       
Sbjct: 227 TFNTLISAAGRANRWEECDRIFAEMEERGIARDDVTY----------------------- 263

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KV 143
             N  ++T+      C   +   GA  +  + + +G++     Y+T+I   AK G   + 
Sbjct: 264 --NTLIATY------CRGGQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEA 315

Query: 144 DAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            A+F     +NV+PD + +N ++    + G  D A  +   M  E      D +T  AL+
Sbjct: 316 IALFQEMRNQNVEPDGICYNTMVDIHARLGNFDEAHSIRRAM--EEAGFAKDIVTYNALL 373

Query: 199 KACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKK 255
            +    G+    RE   ++ +   +G +P +  Y+  I+   + G    A +++ D+ K 
Sbjct: 374 DSYGKQGKF---REAMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKA 430

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-----K 310
           G+ PD V  S L+D     G  + A  +L+E  + GI   +I+Y+SL+ A         K
Sbjct: 431 GLQPDVVLYSTLVDGCCKNGSPDEALALLEEMADNGIRPNVITYNSLLDAYGRQCLMVRK 490

Query: 311 NWQKALELYEHMKSIKLKPTVS-TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
           N+ K         ++ LKP+V     +L+        +     V  +M   G+ PN +T+
Sbjct: 491 NFPKLRFFLLPRVTMLLKPSVDYDQQSLVDPKQKQALVLAAARVFREMAKNGVKPNVVTF 550

Query: 370 SILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTL 421
           S +L AC     VE    LL   +  DG +   V    ++G   R +  A TL
Sbjct: 551 SSILNACSHCASVEDASSLLEAMRVFDGRVYG-VTHGLLMGFRIRVWRDAETL 602



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 159/348 (45%), Gaps = 31/348 (8%)

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPE-VYTIAINCCSQTGDW 242
           H + PD +    +++   ++GQ ++  + +  M+ + N++   + V +  I+   + G  
Sbjct: 80  HLLGPDDLPF--IVRELGHSGQWEKVVKSFDWMVLQQNLRSQWDKVTSTIISSLGRLGRS 137

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           ++A  ++D     G   +    S+LI   G +GK+  A EI  EA        ++ Y+++
Sbjct: 138 DWAQLIFDRAVGAGFGNNVFVYSSLICAYGRSGKLAKAVEIF-EAMKVVCKPNLVVYNAV 196

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           + ACS   ++  AL ++  M    + P   T N LI+A    ++  +   + ++M+  G+
Sbjct: 197 IDACSKGGDYPTALRIFREMLEQGMSPDRITFNTLISAAGRANRWEECDRIFAEMEERGI 256

Query: 363 CPNTITYSILLVACERKDDVEVGLMLL-SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
             + +TY+ L+    R   + +G  L+ + AK  G+ P+++ +  +I      Y K    
Sbjct: 257 ARDDVTYNTLIATYCRGGQMHLGAALMETMAKSSGIEPSVITYSTMID----GYAKLGLA 312

Query: 422 NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERL 481
           +E +  F   R Q           V  + I   T+  V++ ++ LG     ++  IR R 
Sbjct: 313 HEAIALFQEMRNQ----------NVEPDGICYNTM--VDIHAR-LGNFDEAHS--IR-RA 356

Query: 482 VENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVPCV 527
           +E  G + D +  +   +L+D +G+      A SLLEE    G  P +
Sbjct: 357 MEEAGFAKDIVTYN---ALLDSYGKQGKFREAMSLLEEMKQRGASPNI 401


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 120/528 (22%), Positives = 223/528 (42%), Gaps = 50/528 (9%)

Query: 16  GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
           G+ A + HDV       N L+ +   S+C  + E+M + G+      ++    +  ++++
Sbjct: 110 GEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRR 169

Query: 76  AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLY 130
           A  +A   F+++      P L TF +L+     +   E AF+V   +   G +  D  L+
Sbjct: 170 A-DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALH 228

Query: 131 TTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
           T ++ T  K+ +V    E           PD + +N +I    ++G    A  VL  M A
Sbjct: 229 TAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLA 288

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
           +     P  +T G L+ +   AG ++RA E+++++     +    +YT  I+  +++G  
Sbjct: 289 KA--CVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRM 346

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           + ACS++D+M + G  PD +  + +ID    +G  E A +  +E    G    +++Y+++
Sbjct: 347 KEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTI 406

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +   S       A  + + M +    P   T   L+   C   +L +  ++L ++     
Sbjct: 407 IQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSS 466

Query: 363 CPNTITYSILLVACERKDDVEVGLMLL---SQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
            PN   YS L+        VE  L  L   S+A  + + P L     I+G+C     K  
Sbjct: 467 SPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCC-SIIVGLC-----KTG 520

Query: 420 TLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE 479
            L+E                   A  +++  +  G  P     + ++  L       +  
Sbjct: 521 RLDE-------------------ACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVER 561

Query: 480 RL-----VENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFG 522
                  +E +G   DA+  + LC  +   GE D RA  +LEEA+S G
Sbjct: 562 AFALLHDLEKVGYLPDAVTYTPLCIGLCKIGEVD-RAVKMLEEASSRG 608



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 160/370 (43%), Gaps = 17/370 (4%)

Query: 70  VCKSQKAIKEAFRFFKLVPNPT-----LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           V +S K    A  FF+           + T+N LM++  + K+    + +   + +AG+ 
Sbjct: 92  VLRSLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIA 151

Query: 125 ADCKLYTTLITTCAKSGKVD---AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDV 176
            +   +  LI + A++ + D     FE       KPD   F  L+    ++G  ++AF+V
Sbjct: 152 PNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEV 211

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
             EM A +  V PD     A+++    A +V  AREV+  + K         Y   I+  
Sbjct: 212 FHEMMA-MGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGL 270

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           ++ G  + A  V D+M  K  +P EV    L++    AG +E A E+ +     G     
Sbjct: 271 AKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNS 330

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           + Y+SL+   + +   ++A  L++ M     +P V T   +I  LC      +  +   +
Sbjct: 331 VIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEE 390

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SR 413
           M   G  PN +TY+ ++    +   V     ++      G  P+ V + C++ G C   R
Sbjct: 391 MMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGR 450

Query: 414 RYEKARTLNE 423
             E A+ L+E
Sbjct: 451 LDEAAQLLDE 460



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 154/360 (42%), Gaps = 21/360 (5%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVP---NPTL 92
           GR+ E   LL+++++       ++Y +    +C     +K + + F   K      +P L
Sbjct: 449 GRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGL 508

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS--GKVDAMF--- 147
              ++++ +C + +  E      R+V E G K D   Y  LI    +S   +V+  F   
Sbjct: 509 CC-SIIVGLCKTGRLDEACRIFQRMVSE-GCKPDATTYNILINGLCRSRENRVERAFALL 566

Query: 148 ---ENVK--PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
              E V   PD V +  L     + G VDRA  +L E  A     + D +   AL     
Sbjct: 567 HDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEE--ASSRGWNADVVAYTALCTGLC 624

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             GQVDRA  +++ + +         Y   IN   +    E AC  +D+M  KG  P   
Sbjct: 625 YQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVA 684

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEH 321
             +AL+    HAG V+ AF   +    +G  VG ++ Y +L+     A     AL+L+E 
Sbjct: 685 TYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFED 744

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S    PT  T  +L   L    +  K  E+L +M + G  P+  T++ +L    + D+
Sbjct: 745 MISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDE 804



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 161/403 (39%), Gaps = 19/403 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L + GR++    +++ M   G       Y       CK  + + EA +      K   +P
Sbjct: 410 LSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGR-LDEAAQLLDELDKCSSSP 468

Query: 91  TLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
            L  ++ L++ +C      +    +    + A    D  L  ++I    K+G++D     
Sbjct: 469 NLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRI 528

Query: 146 ----MFENVKPDRVVFNALITACGQS--GAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
               + E  KPD   +N LI    +S    V+RAF +L ++  E     PD +T   L  
Sbjct: 529 FQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDL--EKVGYLPDAVTYTPLCI 586

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G+VDRA ++ +             YT         G  + A S++ +M ++G  P
Sbjct: 587 GLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAP 646

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D      +I+      K+E A +   E   +G    + +Y++L+ A  +A N  +A   +
Sbjct: 647 DAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRF 706

Query: 320 EHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           E M +  +L  +V   +ALI   C   ++   +++  DM S G  P  +T + L     R
Sbjct: 707 ESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVR 766

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
               E    LL +    G  P+   F  I+    +  E  + L
Sbjct: 767 SGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLL 809



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 92/426 (21%), Positives = 172/426 (40%), Gaps = 58/426 (13%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKL 86
           Y  LI    + GR+ E   L ++M   G    D + H    + +CKS    + A  F ++
Sbjct: 333 YTSLIHGFAKSGRMKEACSLFDEMVEAGYRP-DVITHTVMIDGLCKSGNFEQAAKSFEEM 391

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +     P + T+  ++   +       AF++++ +   G   D   Y  L+    K G++
Sbjct: 392 MRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRL 451

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN-AEVHPVDPDHITI 194
           D   +        +  P+  ++++L+      G+V++  D L E + A    +DP  +  
Sbjct: 452 DEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPG-LCC 510

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFACSVYDDM 252
             ++  C   G++D A  +++ +     K     Y I IN  C S+    E A ++  D+
Sbjct: 511 SIIVGLC-KTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDL 569

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL-MGACSNA-- 309
            K G +PD V  + L       G+V+ A ++L+EA ++G +  +++Y++L  G C     
Sbjct: 570 EKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQV 629

Query: 310 --------------------------------KNWQKALELYEHMKSIKLKPTVSTMNAL 337
                                           K  + A + ++ M     KPTV+T  AL
Sbjct: 630 DRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTAL 689

Query: 338 ITALCDGDQLPKTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           + ALC    + +       M + G L  + + Y  L+    +   V+  L L       G
Sbjct: 690 VQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRG 749

Query: 397 VIPNLV 402
            +P  V
Sbjct: 750 NVPTAV 755



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 152/347 (43%), Gaps = 21/347 (6%)

Query: 28  QLHS--YNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFF 84
           QL+S   N L   G + + +D L +  +     +D  +  +    +CK+ + + EA R F
Sbjct: 471 QLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGR-LDEACRIF 529

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           + + +    P  +T+N+L++    S+++  E AF +L  +++ G   D   YT L     
Sbjct: 530 QRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLC 589

Query: 139 KSGKVD---AMFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           K G+VD    M E         D V + AL T     G VDRA  +  EM  +     PD
Sbjct: 590 KIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGA--PD 647

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
                 ++       +++ A + +  +     K T   YT  +      G+ + A   ++
Sbjct: 648 AAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFE 707

Query: 251 DMTKKGVIPDEVFL-SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
            M  +G +   V +  ALI     A KV+AA ++ ++  ++G     ++ +SL      +
Sbjct: 708 SMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRS 767

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
              +KA EL + M +    P  +T  A++  L   D+  K ++++ +
Sbjct: 768 GKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 113/462 (24%), Positives = 188/462 (40%), Gaps = 52/462 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L+R+G + E + L+E M             A    +C S +   EA R         ++ 
Sbjct: 69  LVRRGDLEEALRLVESMSGLEPSAAPGPCAALIKKLCASGRT-AEARRVLAACEPDVMAY 127

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAM 146
             M+   C + +         RLV +  ++ D   Y TLI      G+         D +
Sbjct: 128 NAMVAGYCVTGQLDAAR----RLVADMPMEPDSYTYNTLIRGLCGRGRTGNALVVLDDML 183

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
                PD V +  L+ A  +     +A  +L EM A+     PD IT   ++      G+
Sbjct: 184 RRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAK--GCAPDIITYNVVVNGICQEGR 241

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           VD A E  K +  +  +     Y I +        WE A  +  +M++KG  P+ V  + 
Sbjct: 242 VDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNM 301

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LI F    G VE A E+L +    G +   +SY+ ++ A    K   +A+   E M S  
Sbjct: 302 LISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRG 361

Query: 327 LKPTVSTMNALITALCDG-----------------------------DQLPK------TM 351
             P + + N L+TALC G                             D L K       +
Sbjct: 362 CYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEAL 421

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI-IGM 410
           E+L++M + GL P+ ITYS +     R+D +E  +    + ++ G+ PN V++  I +G+
Sbjct: 422 ELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGL 481

Query: 411 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 452
           C RR E    ++  +   ++G    E+ +T L   +  E +V
Sbjct: 482 CKRR-ETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLV 522



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/416 (21%), Positives = 170/416 (40%), Gaps = 81/416 (19%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LIR    +GR    + +L+DM R+G +                            
Sbjct: 157 YTYNTLIRGLCGRGRTGNALVVLDDMLRRGCV---------------------------- 188

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P + T+ +L+         + A ++L  ++  G   D   Y  ++    + G+VD 
Sbjct: 189 ----PDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDD 244

Query: 146 MFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
             E +K        P+ V +N ++     +   + A  ++AEM+ + +P  P+ +T   L
Sbjct: 245 AIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYP--PNVVTFNML 302

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +      G V+ A EV   I KY        Y   ++   +    + A +  + M  +G 
Sbjct: 303 ISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGC 362

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD V  + L+      G+V+AA E+L + K++G +  +ISY++++   + A   ++ALE
Sbjct: 363 YPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALE 422

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI---------- 367
           L   M +  L+P + T + + + LC  D++ + +     ++ +G+ PNT+          
Sbjct: 423 LLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLC 482

Query: 368 -------------------------TYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
                                    TY+IL+     +  V+    LL +    GV+
Sbjct: 483 KRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVV 538


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 162/370 (43%), Gaps = 53/370 (14%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQE------AGLKADCKLYTTLITTCAKSGKV 143
           P++ TF +L++    ++  + A QV   ++        G++ D  L+ TLI    K GK 
Sbjct: 314 PSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKE 373

Query: 144 D---AMFENVK------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +   ++ E +K      P+ V +N LI    ++G  DRA ++  +MN E   V P+ IT+
Sbjct: 374 EDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEE--GVQPNVITL 431

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+      G+V RA E +  +    +KG    YT  I+      +   A   +++M  
Sbjct: 432 NTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLS 491

Query: 255 KGVIPDEVFLSALIDFAGHAG-----------------------------------KVEA 279
            G  PD V   +LI     AG                                   K+E 
Sbjct: 492 SGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLER 551

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
            +E+L E +  G+    I+Y++L+       ++  A ++ E M    L+P+V T  A+I 
Sbjct: 552 VYELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIH 611

Query: 340 ALCDGDQLPKTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
           A C    + + M++  +M S   + PNT+ Y+IL+ A  R +DV+  + L+   K   V 
Sbjct: 612 AYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVR 671

Query: 399 PNLVMFKCII 408
           PN   +  I+
Sbjct: 672 PNTTTYNAIL 681



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 169/395 (42%), Gaps = 23/395 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKV------YHARFFNVCKSQK-----AIKEAF 81
           N L +  RI E + + + +  KG  +   V      ++     +CK  K     ++ E  
Sbjct: 324 NHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEM 383

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +    +  P   T+N L+     + + + A ++ R + E G++ +     TL+    K G
Sbjct: 384 KMGN-INRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHG 442

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +V    E         +K +   + ALI+A      ++RA     EM +      PD + 
Sbjct: 443 RVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSS--GCSPDAVV 500

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +L+     AG+++ A  V   +           Y + I+   +    E    +  +M 
Sbjct: 501 YYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEME 560

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + GV PD +  + LI + G  G    A +++++   +G+   +++Y +++ A  + KN  
Sbjct: 561 ETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVD 620

Query: 314 KALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           + ++++  M S  K+ P     N LI ALC  + + + + ++ DMK   + PNT TY+ +
Sbjct: 621 EGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAI 680

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
           L     K  +     L+ +  E+   P+ +  + +
Sbjct: 681 LKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVL 715



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 116/261 (44%), Gaps = 33/261 (12%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D    NAL+T  G+   + R  ++LAEM  E   + P  +T G L+     A ++D A +
Sbjct: 280 DAASCNALLTWLGRGRDIKRMNELLAEM--EKRKIRPSVVTFGILVNHLCKARRIDEALQ 337

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           V+  +     KG                +W             GV PD V  + LID   
Sbjct: 338 VFDRLRG---KG--------------GSNW------------VGVEPDVVLFNTLIDGLC 368

Query: 273 HAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
             GK E    +L+E K   I+    ++Y+ L+     A N+ +A EL+  M    ++P V
Sbjct: 369 KVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQMNEEGVQPNV 428

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T+N L+  LC   ++ + +E  ++MK  GL  N  TY+ L+ A    +++   +    +
Sbjct: 429 ITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEE 488

Query: 392 AKEDGVIPNLVMFKCII-GMC 411
               G  P+ V++  +I G+C
Sbjct: 489 MLSSGCSPDAVVYYSLISGLC 509



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/330 (22%), Positives = 138/330 (41%), Gaps = 56/330 (16%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           + ++GV PD   L+ L+       K   A+E+L      G +V   S ++L+      ++
Sbjct: 237 LGERGVFPDGFKLTQLVGKLCGDQKNGVAWEVLHCVMRLGGAVDAASCNALLTWLGRGRD 296

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS------LGLCPN 365
            ++  EL   M+  K++P+V T   L+  LC   ++ + ++V   ++       +G+ P+
Sbjct: 297 IKRMNELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPD 356

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGV-IPNLVMFKCII------GMCSRRYEKA 418
            + ++ L+    +    E GL LL + K   +  PN V + C+I      G   R +E  
Sbjct: 357 VVLFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELF 416

Query: 419 RTLNE-----HVLSFNS--------GR--------PQIENK--------WTSL------- 442
           R +NE     +V++ N+        GR         +++ K        +T+L       
Sbjct: 417 RQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAFCGV 476

Query: 443 -----ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 497
                A+  + E + +G  P   V   ++  L +    +    +V  L ++  +L RS  
Sbjct: 477 NNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCY 536

Query: 498 CSLIDGFGEYDP--RAFSLLEEAASFGIVP 525
             LI GF +     R + LL E    G+ P
Sbjct: 537 NVLISGFCKKKKLERVYELLTEMEETGVKP 566


>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
           thaliana]
          Length = 949

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 183/416 (43%), Gaps = 26/416 (6%)

Query: 19  ANYAHDVSEQLHS------YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR-- 66
           A+Y  D ++++H       Y ++I    +   +     L+ +ME +G+     +YH    
Sbjct: 398 ADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMD 457

Query: 67  -FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            +  V   +K +    R  +    PT+ T+  L+++         A +V R+++E G+K 
Sbjct: 458 GYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKH 517

Query: 126 DCKLYTTLITTCAK---SGKVDAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVL 177
           + K Y+ +I    K        A+FE++     KPD +++N +I+A    G +DRA   +
Sbjct: 518 NLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTV 577

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            EM    H   P   T   ++   A +G + R+ EV+ M+ +     T   +   IN   
Sbjct: 578 KEMQKLRH--RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLV 635

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           +      A  + D+MT  GV  +E   + ++      G    AFE     +N+G+ V I 
Sbjct: 636 EKRQ---AVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIF 692

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +Y +L+ AC  +   Q AL + + M +  +       N LI        + +  +++  M
Sbjct: 693 TYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM 752

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           K  G+ P+  TY+  + AC +  D+      + + +  GV PN+  +  +I   +R
Sbjct: 753 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWAR 808



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 133/322 (41%), Gaps = 38/322 (11%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK 151
           L T++M+++     KD   AF V   + + G+K D  LY  +I+     G +D   + VK
Sbjct: 519 LKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVK 578

Query: 152 --------PDRVVFNALITACGQSGAVDRAFDVLAEMN-----AEVHP------------ 186
                   P    F  +I    +SG + R+ +V   M        VH             
Sbjct: 579 EMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKR 638

Query: 187 -------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
                        V  +  T   +M+  A+ G   +A E +  +    +      Y   +
Sbjct: 639 QAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALL 698

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
             C ++G  + A +V  +M+ + +  +    + LID     G V  A +++Q+ K +G+ 
Sbjct: 699 KACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVK 758

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
             I +Y+S + ACS A +  +A +  E M+++ +KP + T   LI          K +  
Sbjct: 759 PDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASLPEKALSC 818

Query: 354 LSDMKSLGLCPNTITYSILLVA 375
             +MK++G+ P+   Y  LL +
Sbjct: 819 YEEMKAMGIKPDKAVYHCLLTS 840



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 147/330 (44%), Gaps = 16/330 (4%)

Query: 25  VSEQLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAI 77
           V   L +Y    N  ++    +    + EDM ++G+     +Y+   + F  +    +AI
Sbjct: 515 VKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAI 574

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           +      KL   PT  TF  ++   A S D   + +V  +++  G       +  LI   
Sbjct: 575 QTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGL 634

Query: 138 AKSGK----VDAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            +  +    +D M    V  +   +  ++      G   +AF+    +  E   +D D  
Sbjct: 635 VEKRQAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNE--GLDVDIF 692

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDD 251
           T  AL+KAC  +G++  A  V K +   NI     VY I I+  ++ GD WE A  +   
Sbjct: 693 TYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWE-AADLIQQ 751

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M K+GV PD    ++ I     AG +  A + ++E +  G+   I +Y++L+   + A  
Sbjct: 752 MKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWARASL 811

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITAL 341
            +KAL  YE MK++ +KP  +  + L+T+L
Sbjct: 812 PEKALSCYEEMKAMGIKPDKAVYHCLLTSL 841



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 68/359 (18%), Positives = 148/359 (41%), Gaps = 24/359 (6%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P+ + F +++       D   A +    ++  G+    ++YT+LI   A    +
Sbjct: 301 FEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDM 360

Query: 144 DAMF--------ENVKPDRVVFNALI---TACGQSGAVDRAFD----VLAEMNAEVHPVD 188
           D           E ++   V ++ ++   +  G + A D  FD    +   +NA ++   
Sbjct: 361 DEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIY--- 417

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
                 G ++ A      ++RA  + + + +  I     +Y   ++  +   D +    V
Sbjct: 418 ------GKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVV 471

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +  + + G  P  V    LI+     GK+  A E+ +  K +G+   + +YS ++     
Sbjct: 472 FKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVK 531

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            K+W  A  ++E M    +KP V   N +I+A C    + + ++ + +M+ L   P T T
Sbjct: 532 LKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRT 591

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 427
           +  ++    +  D+   L +    +  G +P +  F  +I     + +    L+E  L+
Sbjct: 592 FMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQAVEILDEMTLA 650



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 86/433 (19%), Positives = 165/433 (38%), Gaps = 108/433 (24%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
            PT   +  L+   A  +D + A   +R ++E G++     Y+ ++   +K+G  +A   
Sbjct: 341 TPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADY 400

Query: 146 MFENVKPDRVVFNA-----LITACGQSGAVDRAFDVLAEMNAE--------VHPV----- 187
            F+  K      NA     +I A  Q+  ++RA  ++ EM  E         H +     
Sbjct: 401 WFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYT 460

Query: 188 --------------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                                P  +T G L+      G++ +A EV +++ +  +K   +
Sbjct: 461 MVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLK 520

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y++ IN   +  DW  A +V++DM K+G+ PD +  + +I      G ++ A + ++E 
Sbjct: 521 TYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEM 580

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ- 346
           +         ++  ++   + + + +++LE+++ M+     PTV T N LI  L +  Q 
Sbjct: 581 QKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQA 640

Query: 347 -------------------------------LPKTMEVLSDMKSLGLCPNTITYSILLVA 375
                                            K  E  + +++ GL  +  TY  LL A
Sbjct: 641 VEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKA 700

Query: 376 C-----------------------------------ERKDDVEVGLMLLSQAKEDGVIPN 400
           C                                    R+ DV     L+ Q K++GV P+
Sbjct: 701 CCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPD 760

Query: 401 LVMFKCIIGMCSR 413
           +  +   I  CS+
Sbjct: 761 IHTYTSFISACSK 773



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 44/165 (26%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A ++      YN LI    R+G + E  DL++ M+++G+                     
Sbjct: 719 ARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV--------------------- 757

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                       P + T+   +S C+ + D   A Q +  ++  G+K + K YTTLI   
Sbjct: 758 -----------KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 806

Query: 138 AKSG---KVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAF 174
           A++    K  + +E      +KPD+ V++ L+T+     ++  A+
Sbjct: 807 ARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAY 851


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 168/395 (42%), Gaps = 52/395 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPN-- 89
           N L R+ R+ E   +LE   R G  + D V +  F + +CK+++ + +AF+  K +    
Sbjct: 15  NGLCREKRLDEAFSVLERAVRAGC-EPDYVTYNVFIDGLCKAER-VDDAFQLLKKMDEKK 72

Query: 90  --PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
             PT  T+  L+     +   + A  VL  + E G     K YT +I   +K+G+V    
Sbjct: 73  CLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEAR 132

Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGAL 197
               D +    +PD  V+ ALI    +SG  + A+ +  E NA  H     PD +T  +L
Sbjct: 133 RIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSL 192

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +     AG++  AR+V+                                   D+  ++G 
Sbjct: 193 IDGLCKAGRILEARQVFD----------------------------------DEAVERGF 218

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
           IPD V  +++ID     G+VE   E   E +N+G     ++Y++L+     AK   KA  
Sbjct: 219 IPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHR 278

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           +Y  M       +  T N ++  LC   ++ +       M+  G     +TYS L+    
Sbjct: 279 VYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFC 338

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            + +V   + L  +  + G  PNLV +  II G+C
Sbjct: 339 SEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLC 373



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 117/472 (24%), Positives = 199/472 (42%), Gaps = 43/472 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L++ GR+ E + +LE M  KG     K Y      + K+ + ++EA R F  ++ N   P
Sbjct: 87  LLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGR-VEEARRIFVDMLGNGCRP 145

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKA-------DCKLYTTLITTCAKSGK 142
               +  L+  +C S K  E       L +EA  +        D   YT+LI    K+G+
Sbjct: 146 DAFVYTALIKGLCKSGKPEEA----YALYKEANARKHHATAVPDVVTYTSLIDGLCKAGR 201

Query: 143 V---------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +         +A+     PD V + ++I    + G V+   +   EM    +  +PD +T
Sbjct: 202 ILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGY--EPDAVT 259

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+     A  + +A  VY+ + +     +   Y I ++   + G    A + +  M 
Sbjct: 260 YAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAME 319

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           ++G +   V  SAL+D     G V AA E+ +   ++G    ++SY+ ++     A    
Sbjct: 320 ERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLA 379

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           KA   +E +   +L P V T NA +  LC   D +   +E+   M S G  PN  +YSIL
Sbjct: 380 KAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYSIL 439

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK------CIIGMCSRRYEKARTLNEHVL 426
           +    R   +EV L +  +    GV P++V+F       CI G      E  R L     
Sbjct: 440 MDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERR-- 497

Query: 427 SFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR 478
                 P   + W+ L  +   E +    + +  +  K+ GC    Y+  +R
Sbjct: 498 ----SAPDAWSYWSLLDGLSRCERMEEARLLSFHM--KLQGCAPRHYDLTVR 543



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 106/266 (39%), Gaps = 43/266 (16%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           PD V F  +I    +   +D AF VL    A     +PD++T    +     A +VD A 
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLE--RAVRAGCEPDYVTYNVFIDGLCKAERVDDAF 62

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           ++ K                                    M +K  +P  V  +AL+D  
Sbjct: 63  QLLK-----------------------------------KMDEKKCLPTTVTYTALVDGL 87

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
             AG+++ A  +L++   +G S  + +Y+ ++   S A   ++A  ++  M     +P  
Sbjct: 88  LKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDA 147

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTITYSILLVA-CERKDDVEVGL 386
               ALI  LC   +  +   +  +  +        P+ +TY+ L+   C+    +E   
Sbjct: 148 FVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQ 207

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMC 411
           +   +A E G IP+ V +  II G+C
Sbjct: 208 VFDDEAVERGFIPDAVTYTSIIDGLC 233



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 112/266 (42%), Gaps = 23/266 (8%)

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD V  + +I+      +++ AF +L+ A   G     ++Y+  +     A+    A +L
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            + M   K  PT  T  AL+  L    +L + M VL  M   G  P   TY++++    +
Sbjct: 65  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSK 124

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIE 436
              VE    +      +G  P+  ++  +I G+C S + E+A  L +   +       + 
Sbjct: 125 AGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVP 184

Query: 437 N--KWTSL------------ALMVY-REAIVAGTIP-TVEVVSKVLGCLQLPYNADIRER 480
           +   +TSL            A  V+  EA+  G IP  V   S + G  +L    +  ER
Sbjct: 185 DVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCER 244

Query: 481 LVE--NLGVSADALKRSNLCSLIDGF 504
             E  N G   DA+  +   +LIDGF
Sbjct: 245 FHEMRNRGYEPDAVTYA---ALIDGF 267


>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 819

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 185/396 (46%), Gaps = 21/396 (5%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN ++      G   + ++L + M R G+   D V H    +  K+     +A  +F++
Sbjct: 225 TYNNVVNACGAAGNWKKALELCKKMIRNGV-GPDLVTHNIVLSAFKNGFQYTKATGYFEM 283

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTCAKS 140
           +      P   T N+++           A  +L  ++E  ++   D   YT++I +    
Sbjct: 284 MKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVC 343

Query: 141 GKVD---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+V+   A+F     E VKP+ V +NAL+ A    G    AF +   +  + + + PD +
Sbjct: 344 GQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLL--KQNGLRPDVV 401

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +   L+ A   + Q ++AREV+  + K + K     Y   I+     G ++ A S+  +M
Sbjct: 402 SYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEM 461

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            K G+ PD V +S L+   G   +      +L+ AK +GI + I++Y+S +G+  +  ++
Sbjct: 462 EKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDY 521

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +KAL+LY  M +  + P   T N LI+ LC   +  ++++   DM  L +      YS L
Sbjct: 522 EKALKLYATMMASNVNPDAVTYNILISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSL 581

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + +  ++D +          K  G  P+++ +  +I
Sbjct: 582 ICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMI 617



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 187/452 (41%), Gaps = 29/452 (6%)

Query: 6   KNMLQFPYPNG-----KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERK------ 54
           KN  Q+    G     K AN A D        + L++ G+  + +DLL  M  K      
Sbjct: 269 KNGFQYTKATGYFEMMKGANIAPDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSP 328

Query: 55  GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQ 113
            ++    + H+ +  VC   +  K  F         P + ++N L+   AS      AF 
Sbjct: 329 DVVTYTSIIHSYY--VCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFG 386

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACG 165
           + +L+++ GL+ D   YTTL+    +S + +   E        + KP++V +NALI A G
Sbjct: 387 IFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYG 446

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
            +G    A  +L EM  +  P  PD ++I  L+ AC    Q  +   V +      I+  
Sbjct: 447 SAGMFKEAISLLHEMEKDGIP--PDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELN 504

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
              Y   I      GD+E A  +Y  M    V PD V  + LI      GK   + +  +
Sbjct: 505 IVAYNSGIGSYLSFGDYEKALKLYATMMASNVNPDAVTYNILISGLCKLGKYAESLKFFE 564

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           +  +  I +    YSSL+ +        +A   + +MK+    P V T  A+I A  D  
Sbjct: 565 DMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASGCFPDVLTYTAMIQAYTDHG 624

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
                 ++  +M+   + P+ I  S L+ A  + +     L L+    +  +  N   + 
Sbjct: 625 SWTSVWDLFKEMEGNAILPDAIICSSLMEALNKGNQYGRVLQLMKFMHDQCIQLNQKAYF 684

Query: 406 CIIGMCS--RRYEKARTLNEHVLSFNSGRPQI 435
            II  CS  R ++ A  + EH+   +S  P I
Sbjct: 685 EIIASCSMLRDWKTASEIIEHL---DSSLPSI 713



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 167/360 (46%), Gaps = 27/360 (7%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAM 146
           + M++ + A     + A  +   +QE   K D  +Y +LI   A++G          D +
Sbjct: 156 YGMMIQLHARHNQVDQARGLFFEMQEWRCKPDADIYNSLINAHARAGLWRWAINIMDDML 215

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              + P R  +N ++ ACG +G   +A ++  +M    + V PD +T   ++ A  N  Q
Sbjct: 216 RAAIPPSRATYNNVVNACGAAGNWKKALELCKKMIR--NGVGPDLVTHNIVLSAFKNGFQ 273

Query: 207 VDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGV--IPDEV 262
             +A   ++M+   NI   P+ +T  I I+C  + G    A  + + M +K V   PD V
Sbjct: 274 YTKATGYFEMMKGANI--APDTFTLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVV 331

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +++I      G+VE    +      +G+   I+SY++L+GA ++     +A  +++ +
Sbjct: 332 TYTSIIHSYYVCGQVENCKAVFDMMVAEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLL 391

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           K   L+P V +   L+ A     Q  K  EV ++M+     PN ++Y+ L+ A       
Sbjct: 392 KQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMF 451

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----------RYEKARTLNEHVLSFNSG 431
           +  + LL + ++DG+ P++V    ++  C R              K R +  +++++NSG
Sbjct: 452 KEAISLLHEMEKDGIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSG 511



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 123/259 (47%), Gaps = 5/259 (1%)

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           R  F  LI     SG+++ A  V   M N E +    D    G +++  A   QVD+AR 
Sbjct: 117 RRNFPLLIREMAFSGSLEHAVYVFCWMKNQENYCARND--IYGMMIQLHARHNQVDQARG 174

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           ++  + ++  K   ++Y   IN  ++ G W +A ++ DDM +  + P     + +++  G
Sbjct: 175 LFFEMQEWRCKPDADIYNSLINAHARAGLWRWAINIMDDMLRAAIPPSRATYNNVVNACG 234

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            AG  + A E+ ++    G+   +++++ ++ A  N   + KA   +E MK   + P   
Sbjct: 235 AAGNWKKALELCKKMIRNGVGPDLVTHNIVLSAFKNGFQYTKATGYFEMMKGANIAPDTF 294

Query: 333 TMNALITALCDGDQLPKTMEVLSDM--KSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           T+N +I  L    Q    +++L+ M  K +   P+ +TY+ ++ +      VE    +  
Sbjct: 295 TLNIVIHCLVKVGQHGDAVDLLNSMREKRVQCSPDVVTYTSIIHSYYVCGQVENCKAVFD 354

Query: 391 QAKEDGVIPNLVMFKCIIG 409
               +GV PN+V +  ++G
Sbjct: 355 MMVAEGVKPNIVSYNALLG 373



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 96/447 (21%), Positives = 183/447 (40%), Gaps = 62/447 (13%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  V   + SYN L+      G  +E   + + +++ GL   D V +    N        
Sbjct: 358 AEGVKPNIVSYNALLGAYASHGMHTEAFGIFKLLKQNGLRP-DVVSYTTLLNAYGRSAQP 416

Query: 78  KEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           ++A   F    K    P   ++N L+    S+   + A  +L  +++ G+  D    +TL
Sbjct: 417 EKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTL 476

Query: 134 ITTCAK---SGKVD-----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +  C +   + K+D     A F  ++ + V +N+ I +    G  ++A  + A M A   
Sbjct: 477 LAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGSYLSFGDYEKALKLYATMMAS-- 534

Query: 186 PVDPDHITIGALMKACANAGQ---------------VDRAREVYK-MIHKY--------- 220
            V+PD +T   L+      G+               +   +EVY  +I  Y         
Sbjct: 535 NVNPDAVTYNILISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQDKLAEA 594

Query: 221 -----NIKGT---PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
                N+K +   P+V  YT  I   +  G W     ++ +M    ++PD +  S+L++ 
Sbjct: 595 ESTFINMKASGCFPDVLTYTAMIQAYTDHGSWTSVWDLFKEMEGNAILPDAIICSSLMEA 654

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
                +     ++++   +Q I +   +Y  ++ +CS  ++W+ A E+ EH+ S     +
Sbjct: 655 LNKGNQYGRVLQLMKFMHDQCIQLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLPSIS 714

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTITYSILLVACERKDDVEVGL 386
           V  +N L+  L    +    M++   M S    +GL    +    LL   + +  VEV  
Sbjct: 715 VGKLNYLLNFLGKCGKTESMMKLFYKMVSSCSTVGLSTYKVLLRNLLAVGKWRKYVEV-- 772

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             L   ++ GV P L M++ ++    R
Sbjct: 773 --LQWMEDAGVRPTLYMYQNVLPYIWR 797


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 173/358 (48%), Gaps = 22/358 (6%)

Query: 70  VCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           +CK  K +K+A  F  L+      P + T+N ++    S    EGA  +  L++  G+K 
Sbjct: 201 LCKEGK-LKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKP 259

Query: 126 DCKLYTTLITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVL 177
           D   Y + I+   K GK++    M E +K     P  V +N LI      G ++ AFD  
Sbjct: 260 DSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYR 319

Query: 178 AEMNAE--VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
            +M  E  +  V   ++ I AL   C    ++D A  + K + +  +      Y I IN 
Sbjct: 320 DKMVREGLMPTVSTYNMLIHALFLDC----KMDEADGIIKEMSEKGLVPDSVTYNILING 375

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
             + G+ + A +++D+M  KG+ P  V  ++LI      G+++ A ++ ++   +GI   
Sbjct: 376 YCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPD 435

Query: 296 IISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
           +I +++L+ G C+N  N  +A  + + M  +K+ P   T N L+   C   ++    E++
Sbjct: 436 LIMFNALIDGHCANG-NMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELI 494

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            +MKS G+ P+ I+Y+ L+    ++ D++    +  +    G  P L+ +  +I G+C
Sbjct: 495 EEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLC 552



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 169/359 (47%), Gaps = 19/359 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I     +GR+     + + M+ +G+      Y +    +CK  K ++EA    + 
Sbjct: 228 TYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGK-LEEASGMLEK 286

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      PT  T+N L+    +  + E AF     +   GL      Y  LI       K
Sbjct: 287 MKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCK 346

Query: 143 VDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +D     +K        PD V +N LI    + G V +AF +  EM ++   + P  +T 
Sbjct: 347 MDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISK--GIQPTRVTY 404

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +L+   +  G++ +A ++++ I +  I     ++   I+     G+ + A ++  +M +
Sbjct: 405 TSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQ 464

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
             V+PDEV  + L+      GKVEAA E+++E K++GI    ISY++L+   S   + + 
Sbjct: 465 MKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKD 524

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           A  + + M SI   PT+ T NALI  LC  ++     ++L +M S G+ PN  TY  L+
Sbjct: 525 AFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLI 583



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 181/387 (46%), Gaps = 24/387 (6%)

Query: 43  ECIDLLEDMERKGLL-------DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           EC D+   M+ KG++       DM  +    F    +++KA       F++    ++ TF
Sbjct: 142 ECFDM---MKGKGVIPHVHACNDMLSL----FLKSNRTEKAWVLYAEMFRMRIKSSVVTF 194

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFE---- 148
           N++++V       + A + + L++  G+K +   Y T+I      G+V+    +F+    
Sbjct: 195 NIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKC 254

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             VKPD   + + I+   + G ++ A  +L +M  E+  + P  +T   L+    N G +
Sbjct: 255 RGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMK-EI-GLRPTAVTYNTLIDGYCNKGNL 312

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           + A +    + +  +  T   Y + I+        + A  +  +M++KG++PD V  + L
Sbjct: 313 EMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNIL 372

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I+     G V+ AF +  E  ++GI    ++Y+SL+   S     ++A +L+E +    +
Sbjct: 373 INGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGI 432

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P +   NALI   C    + +   +L +M  + + P+ +T++ L+    R+  VE    
Sbjct: 433 FPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARE 492

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           L+ + K  G+ P+ + +  +I   S+R
Sbjct: 493 LIEEMKSRGIKPDHISYNTLISGYSKR 519



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 144/299 (48%), Gaps = 25/299 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY----HARFFNVCKSQKA---IKE 79
           +YN LI     +G +    D  + M R+GL+     Y    HA F + CK  +A   IKE
Sbjct: 298 TYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLD-CKMDEADGIIKE 356

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                 LVP+    T+N+L++      + + AF +   +   G++     YT+LI   +K
Sbjct: 357 MSEK-GLVPDSV--TYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSK 413

Query: 140 SGKV---DAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            G++   D +FE +      PD ++FNALI     +G +DRAF +L EM+     V PD 
Sbjct: 414 RGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQ--MKVVPDE 471

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T   LM+     G+V+ ARE+ + +    IK     Y   I+  S+ GD + A  V D+
Sbjct: 472 VTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDE 531

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           M   G  P  +  +ALI       + + A ++L+E  ++GI+    +Y SL+    N +
Sbjct: 532 MLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGIGNVE 590



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 132/294 (44%), Gaps = 10/294 (3%)

Query: 129 LYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
           LY  LI  C +  + D  FE         V P     N +++   +S   ++A+ + AEM
Sbjct: 123 LYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEM 182

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
                 +    +T   ++      G++ +A+E   ++    IK     Y   I+     G
Sbjct: 183 FR--MRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRG 240

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
             E A  ++D M  +GV PD     + I      GK+E A  +L++ K  G+    ++Y+
Sbjct: 241 RVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYN 300

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           +L+    N  N + A +  + M    L PTVST N LI AL    ++ +   ++ +M   
Sbjct: 301 TLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEK 360

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           GL P+++TY+IL+    R  +V+    L  +    G+ P  V +  +I + S+R
Sbjct: 361 GLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKR 414


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 120/528 (22%), Positives = 223/528 (42%), Gaps = 50/528 (9%)

Query: 16  GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
           G+ A + HDV       N L+ +   S+C  + E+M + G+      ++    +  ++++
Sbjct: 110 GEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRR 169

Query: 76  AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLY 130
           A  +A   F+++      P L TF +L+     +   E AF+V   +   G +  D  L+
Sbjct: 170 A-DDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALH 228

Query: 131 TTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
           T ++ T  K+ +V    E           PD + +N +I    ++G    A  VL  M A
Sbjct: 229 TAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLA 288

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
           +     P  +T G L+ +   AG ++RA E+++++     +    +YT  I+  +++G  
Sbjct: 289 KA--CVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRM 346

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           + ACS++D+M + G  PD +  + +ID    +G  E A +  +E    G    +++Y+++
Sbjct: 347 KEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTI 406

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +   S       A  + + M +    P   T   L+   C   +L +  ++L ++     
Sbjct: 407 IQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSS 466

Query: 363 CPNTITYSILLVACERKDDVEVGLMLL---SQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
            PN   YS L+        VE  L  L   S+A  + + P L     I+G+C     K  
Sbjct: 467 SPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCC-SIIVGLC-----KTG 520

Query: 420 TLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE 479
            L+E                   A  +++  +  G  P     + ++  L       +  
Sbjct: 521 RLDE-------------------ACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVER 561

Query: 480 RL-----VENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFG 522
                  +E +G   DA+  + LC  +   GE D RA  +LEEA+S G
Sbjct: 562 AFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVD-RAVKMLEEASSRG 608



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 160/370 (43%), Gaps = 17/370 (4%)

Query: 70  VCKSQKAIKEAFRFFKLVPNPT-----LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           V +S K    A  FF+           + T+N LM++  + K+    + +   + +AG+ 
Sbjct: 92  VLRSLKVTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIA 151

Query: 125 ADCKLYTTLITTCAKSGKVD---AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDV 176
            +   +  LI + A++ + D     FE       KPD   F  L+    ++G  ++AF+V
Sbjct: 152 PNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEV 211

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
             EM A +  V PD     A+++    A +V  AREV+  + K         Y   I+  
Sbjct: 212 FHEMMA-MGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGL 270

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           ++ G  + A  V D+M  K  +P EV    L++    AG +E A E+ +     G     
Sbjct: 271 AKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNS 330

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           + Y+SL+   + +   ++A  L++ M     +P V T   +I  LC      +  +   +
Sbjct: 331 VIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEE 390

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SR 413
           M   G  PN +TY+ ++    +   V     ++      G  P+ V + C++ G C   R
Sbjct: 391 MMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGR 450

Query: 414 RYEKARTLNE 423
             E A+ L+E
Sbjct: 451 LDEAAQLLDE 460



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 152/360 (42%), Gaps = 21/360 (5%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVP---NPTL 92
           GR+ E   LL+++++       ++Y +    +C     +  + + F   K      +P L
Sbjct: 449 GRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGL 508

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS--GKVDAMFENV 150
              ++++ +C + +  E      R+V E G K D   Y  LI    +S   +V+  F  +
Sbjct: 509 CC-SIIVGLCKTGRLDEACRIFQRMVSE-GCKPDATTYNILINGLCRSRENRVERAFALL 566

Query: 151 K--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                    PD V +  L     + G VDRA  +L E  A     + D +   AL     
Sbjct: 567 HDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEE--ASSRGWNADVVAYTALCTGLC 624

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             GQVDRA  +++ + +         Y   IN   +    E AC  +D+M  KG  P   
Sbjct: 625 YQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVA 684

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEH 321
             +AL+    HAG V+ AF   +    +G  VG ++ Y +L+     A     AL+L+E 
Sbjct: 685 TYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFED 744

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S    PT  T  +L   L    +  K  E+L +M + G  P+  T++ +L    + D+
Sbjct: 745 MISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDE 804



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 160/403 (39%), Gaps = 19/403 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L + GR++    +++ M   G       Y       CK  + + EA +      K   +P
Sbjct: 410 LSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGR-LDEAAQLLDELDKCSSSP 468

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
            L  ++ L+  +C           +    + A    D  L  ++I    K+G++D     
Sbjct: 469 NLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRI 528

Query: 146 ----MFENVKPDRVVFNALITACGQS--GAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
               + E  KPD   +N LI    +S    V+RAF +L ++  E+    PD +T   L  
Sbjct: 529 FQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDL--EMVGYLPDAVTYTPLCI 586

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G+VDRA ++ +             YT         G  + A S++ +M ++G  P
Sbjct: 587 GLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAP 646

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D      +I+      K+E A +   E   +G    + +Y++L+ A  +A N  +A   +
Sbjct: 647 DAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRF 706

Query: 320 EHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           E M +  +L  +V   +ALI   C   ++   +++  DM S G  P  +T + L     R
Sbjct: 707 EGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVR 766

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
               E    LL +    G  P+   F  I+    +  E  + L
Sbjct: 767 SGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLL 809



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 155/363 (42%), Gaps = 22/363 (6%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKL 86
           Y  LI    + GR+ E   L ++M   G    D + H    + +CKS    + A  F ++
Sbjct: 333 YTSLIHGFAKSGRMKEACSLFDEMVEAGYRP-DVITHTVMIDGLCKSGNFEQAAKSFEEM 391

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +     P + T+  ++   +       AF++++ +   G   D   Y  L+    K G++
Sbjct: 392 MRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRL 451

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN-AEVHPVDPDHITI 194
           D   +        +  P+  ++++L+      G+V+   D L E + A    +DP  +  
Sbjct: 452 DEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPG-LCC 510

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFACSVYDDM 252
             ++  C   G++D A  +++ +     K     Y I IN  C S+    E A ++  D+
Sbjct: 511 SIIVGLC-KTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDL 569

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
              G +PD V  + L       G+V+ A ++L+EA ++G +  +++Y++L          
Sbjct: 570 EMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQV 629

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            +A+ L++ M      P  +    +I  L  G +L    +   +M   G  P   TY+ L
Sbjct: 630 DRAVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTAL 689

Query: 373 LVA 375
           + A
Sbjct: 690 VQA 692



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 152/351 (43%), Gaps = 23/351 (6%)

Query: 26  SEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEA 80
           S  L  Y+ L++     G +   +D L +  +    ++D  +  +    +CK+ + + EA
Sbjct: 467 SPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGR-LDEA 525

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLI 134
            R F+ + +    P  +T+N+L++    S+++  E AF +L  ++  G   D   YT L 
Sbjct: 526 CRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLC 585

Query: 135 TTCAKSGKVD---AMFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               K G+VD    M E         D V + AL T     G VDRA  +  EM  +   
Sbjct: 586 IGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGA 645

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             PD      ++       +++ A + +  +     K T   YT  +      G+ + A 
Sbjct: 646 --PDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAF 703

Query: 247 SVYDDMTKKGVIPDEVFL-SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             ++ M  +G +   V +  ALI     A KV+AA ++ ++  ++G     ++ +SL   
Sbjct: 704 HRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDG 763

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
              +   +KA EL + M +    P  +T  A++  L   D+  K ++++ +
Sbjct: 764 LVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 160/373 (42%), Gaps = 46/373 (12%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM-- 146
           P  +TF  LM         E A ++   + E G          LI    K G+V DA+  
Sbjct: 229 PDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGY 288

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 +  +PDRV F+  +    Q+G VD A  VL  M  E    +PD  T   ++   
Sbjct: 289 IQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQE--GCEPDVYTYSTVINCL 346

Query: 202 ANAGQVDRAR--------------------------------EVYKMIHKYNIKG-TPEV 228
            N G+++ A+                                E   +  +  +KG +P V
Sbjct: 347 CNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNV 406

Query: 229 YT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           YT  I IN   + GD   A  ++++M   G  PDEV  + LID    +GK+  A ++L+E
Sbjct: 407 YTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKE 466

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            +  G     ++Y++++      +  ++A E+++ M    +     T N LI  LC+ ++
Sbjct: 467 MEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAER 526

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +    E++  M S GL PN +TY+ +L    ++ ++     +L     +G   ++V +  
Sbjct: 527 IDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYAT 586

Query: 407 II-GMCSRRYEKA 418
           +I G+C  R  +A
Sbjct: 587 LINGLCKARRTQA 599



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 157/351 (44%), Gaps = 18/351 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + TFN ++     ++ +  A  +L  +    +  D   +TTL+    + G ++A    
Sbjct: 194 PDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRL 253

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-HPVDPDHITIGALMKA 200
                     P  V  N LI    + G   R  D L  +  E+    +PD +T    +  
Sbjct: 254 KARMSEMGCSPTSVTVNVLINGYCKLG---RVGDALGYIQQEIADGFEPDRVTFSTFVNG 310

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVI 258
               G VD A +V  ++ +   +  P+VYT +  INC    G+ E A  + + M   G +
Sbjct: 311 LCQNGHVDHALKVLGLMLQEGCE--PDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCL 368

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD    + LI       ++E A ++ +E   +G+S  + +++ L+ A     +   A+ L
Sbjct: 369 PDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRL 428

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           +E MKS    P   T N LI  LC   +L K +++L +M+  G   +T+TY+ ++    +
Sbjct: 429 FEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCK 488

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLS 427
           +  +E    +  Q    G+  N + F  +I G+C + R + A  L + ++S
Sbjct: 489 RRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMIS 539



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/395 (20%), Positives = 171/395 (43%), Gaps = 22/395 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   + GR+ + +  ++     G  + D+V  + F N       +  A +   L+     
Sbjct: 274 NGYCKLGRVGDALGYIQQEIADGF-EPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGC 332

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T++ +++   ++ + E A  ++  + ++G   D   + TLI       +++   +
Sbjct: 333 EPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALD 392

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    + P+   FN LI A  + G    A  +  EM +      PD +T   L+  
Sbjct: 393 LARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKS--SGCTPDEVTYNILIDN 450

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
             ++G++ +A ++ K   +  + G P+    Y   I+   +    E A  V+D M   G+
Sbjct: 451 LCSSGKLAKALDLLK---EMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGI 507

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             + +  + LID   +A +++ A E++ +  ++G+    ++Y+S++       N  KA +
Sbjct: 508 GRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAAD 567

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           + + M +   +  V T   LI  LC   +    +++L  M+  G+ P    Y+ ++ +  
Sbjct: 568 ILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLF 627

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           R ++    L L  +  E G  P+   +K +  G+C
Sbjct: 628 RGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLC 662



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/315 (21%), Positives = 139/315 (44%), Gaps = 17/315 (5%)

Query: 108 SEGAFQVLRLV----QEAGLKADCKLYTTLITTCAKSGKVDAMFE---------NVKPDR 154
           + GAF +++++    +  G +    L  + I + A+    D  F+          V+ + 
Sbjct: 102 TAGAFDLMKVLVGEMRREGHEVGLGLVQSFIGSYARLQLFDDAFDLVSNQLDMFGVQANT 161

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
            V+N L+T   +   +        EM+++   ++PD +T   ++ A   A Q   A  + 
Sbjct: 162 EVYNHLLTVLAEGSKIKLLESAYTEMSSQ--GIEPDVVTFNTVIDALCRARQARTAVLML 219

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           + +   ++      +T  +    + G  E A  +   M++ G  P  V ++ LI+     
Sbjct: 220 EEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKL 279

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVST 333
           G+V  A   +Q+    G     +++S+ + G C N  +   AL++   M     +P V T
Sbjct: 280 GRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNG-HVDHALKVLGLMLQEGCEPDVYT 338

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            + +I  LC+  +L +   +++ M   G  P+T T++ L+VA   ++ +E  L L  +  
Sbjct: 339 YSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELT 398

Query: 394 EDGVIPNLVMFKCII 408
             G+ PN+  F  +I
Sbjct: 399 VKGLSPNVYTFNILI 413



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 162/377 (42%), Gaps = 32/377 (8%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + + P R V+  +I   G +GA D    ++ EM  E H V    +   + + + A     
Sbjct: 84  DGLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQ--SFIGSYARLQLF 141

Query: 208 DRARE-VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           D A + V   +  + ++   EVY   +   ++    +   S Y +M+ +G+ PD V  + 
Sbjct: 142 DDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNT 201

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           +ID    A +   A  +L+E  +  ++    ++++LM       + + AL L   M  + 
Sbjct: 202 VIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMG 261

Query: 327 LKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
             PT  T+N LI   C     GD L    + ++D    G  P+ +T+S  +    +   V
Sbjct: 262 CSPTSVTVNVLINGYCKLGRVGDALGYIQQEIAD----GFEPDRVTFSTFVNGLCQNGHV 317

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKARTLNEHVL---------SFNSG 431
           +  L +L    ++G  P++  +  +I  +C+    E+A+ +   ++         +FN+ 
Sbjct: 318 DHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTL 377

Query: 432 RPQI--ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---G 486
              +  EN+    AL + RE  V G  P V   + ++  L    +  +  RL E +   G
Sbjct: 378 IVALCTENQLEE-ALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSG 436

Query: 487 VSADALKRS----NLCS 499
            + D +  +    NLCS
Sbjct: 437 CTPDEVTYNILIDNLCS 453


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 158/336 (47%), Gaps = 10/336 (2%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK-- 151
           T+N L+     + D E AFQ+L  ++E G   D   +++++     +G +    +  +  
Sbjct: 107 TYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRES 166

Query: 152 ----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
               PD V+FN L+    ++  +  A  ++ EM+     + PD +T  +L+     + ++
Sbjct: 167 VECAPDSVLFNILVHGLCKANQLSEARQMIEEMSER--GIVPDVVTYNSLIDGLCKSYRM 224

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           + AR++ + + K  ++     Y   I    +TG    A  + + M + G  PD V  ++L
Sbjct: 225 EEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSL 284

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I       K++ A E+L   K    +  +++Y+ L+    +A    +A EL   M    +
Sbjct: 285 ISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGI 344

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P + T N+LI   C   Q+ +  ++ + M   G+ P+ I+Y  L VA  + +  +    
Sbjct: 345 LPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFA 404

Query: 388 LLSQAKEDGVIPNLVMFKCII-GM-CSRRYEKARTL 421
           LL    + G IPNL  F  ++ G+ CSRR ++AR L
Sbjct: 405 LLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHL 440



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 141/272 (51%), Gaps = 10/272 (3%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           ++   + + +N LI    ++G ++RAF +LAEM    H   PD +T  ++++A  N G +
Sbjct: 99  QHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGH--SPDVVTHSSIVQALCNTGNL 156

Query: 208 DRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            RA + +    + +++  P+  ++ I ++   +      A  + ++M+++G++PD V  +
Sbjct: 157 SRAMQYF----RESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYN 212

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           +LID    + ++E A ++L+    + +   +++Y++L+           A +L E M   
Sbjct: 213 SLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQS 272

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEV 384
              P V T N+LI+  C   ++ K  EVL  MK  GLC PN +TY++L+           
Sbjct: 273 GTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKK-GLCAPNLVTYNVLISGLCDAGRANE 331

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
              LLS+    G++P+++ +  +IG+  R ++
Sbjct: 332 ACELLSEMDGRGILPDIITYNSLIGIFCRNFQ 363



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 184/399 (46%), Gaps = 35/399 (8%)

Query: 16  GKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           G+H +  H       +YN LI    + G +     LL +M+ +G    D V H+      
Sbjct: 98  GQHCDTNHI------TYNTLIGGFCKAGDMERAFQLLAEMKERGH-SPDVVTHSSIVQAL 150

Query: 72  KSQKAIKEAFRFFK----LVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKAD 126
            +   +  A ++F+      P+  L  FN+L+  +C +++ SE A Q++  + E G+  D
Sbjct: 151 CNTGNLSRAMQYFRESVECAPDSVL--FNILVHGLCKANQLSE-ARQMIEEMSERGIVPD 207

Query: 127 CKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLA 178
              Y +LI    KS +++   +         V+P+ V +N LI    ++G    A  ++ 
Sbjct: 208 VVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIE 267

Query: 179 EM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            M  +  HP   D +T  +L+       ++D+A EV  ++ K         Y + I+   
Sbjct: 268 RMIQSGTHP---DVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLC 324

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
             G    AC +  +M  +G++PD +  ++LI       ++E AF+I      +G+    I
Sbjct: 325 DAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGI 384

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           SY +L  A   ++ + +A  L ++M      P + T N+L+  LC   +L +   +L+ M
Sbjct: 385 SYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVM 444

Query: 358 KSLGLCPNTITYSILLVA-CE--RKDDV-EVGLMLLSQA 392
           + +G  P   TY +L+   C+  R DD  EV +M++S+ 
Sbjct: 445 RRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEG 483



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 141/315 (44%), Gaps = 20/315 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-------K 142
           P + T+N L+     S   E A Q+L  + +  ++ +   Y TLI    K+G        
Sbjct: 206 PDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQL 265

Query: 143 VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           ++ M ++   PD V FN+LI+   Q   +D+A +VL  M   +    P+ +T   L+   
Sbjct: 266 IERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGL--CAPNLVTYNVLISGL 323

Query: 202 ANAGQVDRAREVYKMIHKYNIKGT-PEVYT----IAINCCSQTGDWEFACSVYDDMTKKG 256
            +AG   RA E  +++ + + +G  P++ T    I I C  +    E A  + + M ++G
Sbjct: 324 CDAG---RANEACELLSEMDGRGILPDIITYNSLIGIFC--RNFQIEQAFQIQNLMVERG 378

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           VIPD +    L      + + + AF +L    + G    + +++SLM     ++   +A 
Sbjct: 379 VIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEAR 438

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            L   M+ +   P  ST   L+T LC   ++    EVL  M S G+ P   +   ++   
Sbjct: 439 HLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTL 498

Query: 377 ERKDDVEVGLMLLSQ 391
            R+   ++ L    Q
Sbjct: 499 AREGKQDLALHYFDQ 513



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 97/200 (48%), Gaps = 17/200 (8%)

Query: 274 AGKVEAAFEILQ-EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
           A +   A++I + E   Q      I+Y++L+G    A + ++A +L   MK     P V 
Sbjct: 82  ARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVV 141

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T ++++ ALC+   L + M+   +  S+   P+++ ++IL+    + + +     ++ + 
Sbjct: 142 THSSIVQALCNTGNLSRAMQYFRE--SVECAPDSVLFNILVHGLCKANQLSEARQMIEEM 199

Query: 393 KEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQI-----------ENKW 439
            E G++P++V +  +I G+C S R E+AR L E ++     RP +           +   
Sbjct: 200 SERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVK-RKVRPNLVTYNTLIYGYCKTGC 258

Query: 440 TSLALMVYREAIVAGTIPTV 459
           T LA  +    I +GT P V
Sbjct: 259 TGLAHQLIERMIQSGTHPDV 278



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 75/362 (20%), Positives = 155/362 (42%), Gaps = 57/362 (15%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L +  ++SE   ++E+M  +G++     Y++    +CKS + ++EA +  + +      P
Sbjct: 183 LCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYR-MEEARQLLETMVKRKVRP 241

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
            L T+N L+     +  +  A Q++  + ++G   D   + +LI+   +  K+D   E +
Sbjct: 242 NLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVL 301

Query: 151 K--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                    P+ V +N LI+    +G  + A ++L+EM+     + PD IT  +L+    
Sbjct: 302 HLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGR--GILPDIITYNSLIGIFC 359

Query: 203 NAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCC-SQTGDWEFACSVYDDMTKKGVIPD 260
              Q+++A ++   M+ +  I       T+A+    S+  D  FA  + D+M   G IP+
Sbjct: 360 RNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFA--LLDNMFDAGAIPN 417

Query: 261 EVFLSAL---------IDFAGH--------------------------AGKVEAAFEILQ 285
               ++L         +D A H                          AG+V+ A E+L 
Sbjct: 418 LFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLV 477

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK---PTVSTMNALITALC 342
              ++GI   + S  +++   +       AL  ++ + + + K   P+   +   +  L 
Sbjct: 478 MMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVAAESKACDPSYQKLLEFVKVLR 537

Query: 343 DG 344
           +G
Sbjct: 538 EG 539



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 95/236 (40%), Gaps = 46/236 (19%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +YN LI      GR +E  +LL +M+ +G+L                           
Sbjct: 313 LVTYNVLISGLCDAGRANEACELLSEMDGRGIL--------------------------- 345

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P + T+N L+ +   +   E AFQ+  L+ E G+  D   Y TL     KS + D
Sbjct: 346 -----PDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFD 400

Query: 145 ---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
              A+ +N+      P+   FN+L+     S  +D A  +LA M       DP   T   
Sbjct: 401 EAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRV--GCDPAASTYEV 458

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           L+     AG+VD A+EV  M+    I+         ++  ++ G  + A   +D +
Sbjct: 459 LVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQV 514


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 168/394 (42%), Gaps = 18/394 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L+R+G + E I L+E M   GL        A       +     EA R         +S 
Sbjct: 66  LVRRGDLEEAIRLVESM--AGLEPSAAGPCAALIKKLCASGRTAEARRVLASCEPDVMSY 123

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENV- 150
             M+   C + +         RLV    ++ D   Y TLI      G+ D   A+ +++ 
Sbjct: 124 NAMVAGYCVTGQLDNAR----RLVAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDML 179

Query: 151 ----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
                PD V +  L+ A  +     +A  +L EM  +     PD +T   ++      G+
Sbjct: 180 RRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDK--GCAPDIVTYNVVVNGICQEGR 237

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           VD A E  K +  Y  +     Y I +        WE A  +  +M++KG  P+ V  + 
Sbjct: 238 VDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNM 297

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LI F    G VE A EIL +    G +   +SY+ ++ A    K   +A+   E M S  
Sbjct: 298 LISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSG 357

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
             P + + N L+TALC G ++   +E+L  +K  G  P  I+Y+ ++    +    E  L
Sbjct: 358 CYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEAL 417

Query: 387 MLLSQAKEDGVIPNLVMFKCI-IGMCSR-RYEKA 418
            LL++    G+ P+++ +  I  G+C   R E+A
Sbjct: 418 ELLNEMVTKGLQPDIITYSTISSGLCREGRIEEA 451



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/406 (21%), Positives = 176/406 (43%), Gaps = 46/406 (11%)

Query: 15  NGKHANYAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNV 70
           N +    A  +    ++YN LIR    +GR    + +L+DM R+G +             
Sbjct: 138 NARRLVAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCV------------- 184

Query: 71  CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
                              P + T+ +L+         + A ++L  +++ G   D   Y
Sbjct: 185 -------------------PDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTY 225

Query: 131 TTLITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
             ++    + G+VD   E +K        P+ V +N ++     +   + A  ++AEM+ 
Sbjct: 226 NVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSR 285

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
           +  P  P+ +T   L+      G V+ A E+   I KY        Y   ++   +    
Sbjct: 286 KGRP--PNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKM 343

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           + A +  + M   G  PD V  + L+      G+V+AA E+L + K++G +  +ISY+++
Sbjct: 344 DRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTV 403

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +   + A   ++ALEL   M +  L+P + T + + + LC   ++ + ++    ++ +G+
Sbjct: 404 IDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGI 463

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            PNT+ Y+ +L+   ++      + L +    +G +PN   +  +I
Sbjct: 464 RPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILI 509



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/324 (20%), Positives = 139/324 (42%), Gaps = 45/324 (13%)

Query: 113 QVLRLVQE-AGLKAD----CKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQS 167
           + +RLV+  AGL+      C      +    ++ +   +  + +PD + +NA++     +
Sbjct: 74  EAIRLVESMAGLEPSAAGPCAALIKKLCASGRTAEARRVLASCEPDVMSYNAMVAGYCVT 133

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
           G +D A  ++A M     P++PD  T   L++     G+ D A                 
Sbjct: 134 GQLDNARRLVAAM-----PMEPDTYTYNTLIRGLCGRGRTDNA----------------- 171

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
                              +V DDM ++G +PD V  + L++        + A ++L E 
Sbjct: 172 ------------------LAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEM 213

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           +++G +  I++Y+ ++           A+E  + + S   +P   + N ++  LC  ++ 
Sbjct: 214 RDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERW 273

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
               +++++M   G  PN +T+++L+    R+  VE  + +L Q  + G  PN + +  I
Sbjct: 274 EDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPI 333

Query: 408 IGMCSRRYEKARTLNEHVLSFNSG 431
           +    ++ +  R +    L  +SG
Sbjct: 334 LHAFCKQKKMDRAMAFVELMVSSG 357


>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g42310, mitochondrial; Flags: Precursor
 gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
 gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 709

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 121/526 (23%), Positives = 224/526 (42%), Gaps = 100/526 (19%)

Query: 81  FRFFKLVPNPTLS--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           +  F L    TL+  T+N L+  CA + D E A  ++  +++ G ++D   Y+ +I +  
Sbjct: 184 YEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLT 243

Query: 139 KSGKVDA-----MFENVKPDRV-----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
           +S K+D+     +++ ++ D++     + N +I    +SG   +A  +L    A+   + 
Sbjct: 244 RSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLG--MAQATGLS 301

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
               T+ +++ A A++G+   A  +++ + +  IK     Y   +    +TG  + A S+
Sbjct: 302 AKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESM 361

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
             +M K+GV PDE   S LID   +AG+ E+A  +L+E +   +      +S L+    +
Sbjct: 362 VSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRD 421

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
              WQK  ++ + MKSI +KP     N +I      + L   M     M S G+ P+ +T
Sbjct: 422 RGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVT 481

Query: 369 YSILL------------------------VAC--------------ERKDDVEVGLMLLS 390
           ++ L+                        + C              ER DD++    LL 
Sbjct: 482 WNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMK---RLLG 538

Query: 391 QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREA 450
           + K  G++PN+V    ++ +    Y K+   N+                   A+    E 
Sbjct: 539 KMKSQGILPNVVTHTTLVDV----YGKSGRFND-------------------AIECLEEM 575

Query: 451 IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV-SADALKRSNLC--SLIDGFGE- 506
              G  P+  + + ++          + E+ V    V ++D LK S L   SLI+ FGE 
Sbjct: 576 KSVGLKPSSTMYNALINAYA---QRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGED 632

Query: 507 -YDPRAFSLLEEAASFGIVPCV--------------SFKEIPVVVD 537
             D  AF++L+     G+ P V               F+++PVV +
Sbjct: 633 RRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYE 678



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 161/360 (44%), Gaps = 13/360 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPT 91
           L   GR  E   L E++ + G+    + Y+A      K+   + A        K   +P 
Sbjct: 314 LADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPD 373

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
             T+++L+    ++   E A  VL+ ++   ++ +  +++ L+      G+    F+   
Sbjct: 374 EHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLK 433

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 VKPDR  +N +I   G+   +D A      M +E   ++PD +T   L+     
Sbjct: 434 EMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSE--GIEPDRVTWNTLIDCHCK 491

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G+   A E+++ + +         Y I IN       W+    +   M  +G++P+ V 
Sbjct: 492 HGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVT 551

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + L+D  G +G+   A E L+E K+ G+      Y++L+ A +     ++A+  +  M 
Sbjct: 552 HTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMT 611

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           S  LKP++  +N+LI A  +  +  +   VL  MK  G+ P+ +TY+ L+ A  R D  +
Sbjct: 612 SDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQ 671



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 115/512 (22%), Positives = 207/512 (40%), Gaps = 82/512 (16%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA------ 80
           +YN LI    R   I + ++L+  M + G       Y + F N     +++  +      
Sbjct: 199 TYNALIGACARNNDIEKALNLIAKMRQDG-------YQSDFVNYSLVIQSLTRSNKIDSV 251

Query: 81  --FRFFKLVPNPTL----STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
              R +K +    L       N ++   A S D   A Q+L + Q  GL A      ++I
Sbjct: 252 MLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSII 311

Query: 135 TTCAKSGKV---DAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
           +  A SG+    +A+FE      +KP    +NAL+    ++G +  A  +++EM  E   
Sbjct: 312 SALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEM--EKRG 369

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE--- 243
           V PD  T   L+ A  NAG+ + AR V K +   +++    V++  +      G+W+   
Sbjct: 370 VSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTF 429

Query: 244 ---------------------------FAC-----SVYDDMTKKGVIPDEVFLSALIDFA 271
                                      F C     + +D M  +G+ PD V  + LID  
Sbjct: 430 QVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 489

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G+   A E+ +  + +G      +Y+ ++ +  + + W     L   MKS  + P V
Sbjct: 490 CKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNV 549

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T   L+       +    +E L +MKS+GL P++  Y+ L+ A  ++   E  +     
Sbjct: 550 VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRV 609

Query: 392 AKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM---- 445
              DG+ P+L+    +I      RR  +A  + ++ +  N  +P +    T +  +    
Sbjct: 610 MTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQY-MKENGVKPDVVTYTTLMKALIRVD 668

Query: 446 -------VYREAIVAGTIPTVEVVSKVLGCLQ 470
                  VY E I++G  P  +  S +   L+
Sbjct: 669 KFQKVPVVYEEMIMSGCKPDRKARSMLRSALR 700



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 119/269 (44%), Gaps = 9/269 (3%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           ++++ LI A G+S  +  AF  L      + P     +T  AL+ ACA    +++A  + 
Sbjct: 168 LLYSILIHALGRSEKLYEAF--LLSQKQTLTP-----LTYNALIGACARNNDIEKALNLI 220

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
             + +   +     Y++ I   +++   D      +Y ++ +  +  D   ++ +I    
Sbjct: 221 AKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFA 280

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            +G    A ++L  A+  G+S    +  S++ A +++    +A  L+E ++   +KP   
Sbjct: 281 KSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTR 340

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
             NAL+        L     ++S+M+  G+ P+  TYS+L+ A       E   ++L + 
Sbjct: 341 AYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEM 400

Query: 393 KEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
           +   V PN  +F  ++     R E  +T 
Sbjct: 401 EAGDVQPNSFVFSRLLAGFRDRGEWQKTF 429


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 174/384 (45%), Gaps = 23/384 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVP--- 88
           N   R  ++S  +  L  M + G  + D V      N  C+  +     + F ++V    
Sbjct: 124 NCFCRCSQLSLALSFLGKMMKLGH-EPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGY 182

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  +N ++     SK  + A  +L  ++  G++ D   Y +LI+    SG+ D    
Sbjct: 183 EPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATR 242

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            V         PD   FNALI AC + G +  A ++  EM      +DPD +T   L+  
Sbjct: 243 MVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIR--RSLDPDIVTYSLLIYG 300

Query: 201 CANAGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGV 257
                ++D A +++  +     KG  P+V  Y+I IN   ++   E    ++ +M+++GV
Sbjct: 301 LCMYSRLDEAEQMFGFMVS---KGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGV 357

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKAL 316
           + + V  + LI     AGK+  A EI +     G+   II+Y+ L+ G C N K  +KAL
Sbjct: 358 VRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGK-IEKAL 416

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            +   M+   +   + T N +I  +C   ++    ++   +   GL P+  TY+ +++  
Sbjct: 417 VILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGL 476

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPN 400
            +K        L  + KEDG++PN
Sbjct: 477 YKKGLRGEADALFRKMKEDGILPN 500



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 159/343 (46%), Gaps = 14/343 (4%)

Query: 73  SQKAIKEAF--RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
           SQ ++  +F  +  KL   P + TF  L++  C   +  +  +   R+V E G + +  +
Sbjct: 130 SQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMV-EMGYEPNVVI 188

Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y T+I    KS +VD   +         ++PD V +N+LI+    SG  D A  +++ M 
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMT 248

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
                + PD  T  AL+ AC   G++  A E+Y+ + + ++      Y++ I        
Sbjct: 249 K--REIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSR 306

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            + A  ++  M  KG  PD V  S LI+    + KVE   ++  E   +G+    ++Y+ 
Sbjct: 307 LDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTV 366

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+     A     A E+++ M    + P + T N L+  LCD  ++ K + +L+DM+  G
Sbjct: 367 LIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSG 426

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           +  + +TY+I++    +  +V     L       G+ P++  +
Sbjct: 427 MDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTY 469



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 170/368 (46%), Gaps = 20/368 (5%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DA--MF 147
            L T N+L++          A   L  + + G + D   + +L+    +  ++ DA  MF
Sbjct: 115 NLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMF 174

Query: 148 ENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           + +     +P+ V++N +I    +S  VD A D+L  M  EV  + PD +T  +L+    
Sbjct: 175 DRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRM--EVDGIRPDAVTYNSLISGLC 232

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           N+G+ D A  +   + K  I   P+V+T    I+ C + G    A  +Y++M ++ + PD
Sbjct: 233 NSGRWDDATRMVSCMTKREI--YPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPD 290

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  S LI       +++ A ++     ++G    +++YS L+     +K  +  ++L+ 
Sbjct: 291 IVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFC 350

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    +     T   LI   C   +L    E+   M   G+ PN ITY++LL       
Sbjct: 351 EMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNG 410

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHV-LSFNSGRPQIENK 438
            +E  L++L+  ++ G+  ++V +  II GMC +  E A   + +  L+     P I   
Sbjct: 411 KIEKALVILADMQKSGMDADIVTYNIIIRGMC-KAGEVADAWDLYCSLNLKGLTPDI--- 466

Query: 439 WTSLALMV 446
           WT  A+M+
Sbjct: 467 WTYTAMML 474



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 152/352 (43%), Gaps = 21/352 (5%)

Query: 83  FFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITT 136
           FF +V   P P+++ F+ L+S  +  K  +    +   +Q  G+  +   C +       
Sbjct: 69  FFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCR 128

Query: 137 CAKSGKVDAMFENV-----KPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVD 188
           C++     +    +     +PD V F +L+    +   +  A   FD + EM  E     
Sbjct: 129 CSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYE----- 183

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ +    ++     + QVD A ++   +    I+     Y   I+    +G W+ A  +
Sbjct: 184 PNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRM 243

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
              MTK+ + PD    +ALID     G++  A E+ +E   + +   I++YS L+     
Sbjct: 244 VSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCM 303

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                +A +++  M S    P V T + LI   C   ++   M++  +M   G+  NT+T
Sbjct: 304 YSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVT 363

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 418
           Y++L+    R   + V   +       GV PN++ +  ++ G+C   + EKA
Sbjct: 364 YTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKA 415


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 162/357 (45%), Gaps = 18/357 (5%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +  KL   P + T + L++    SK    A  ++  + E G K D   + TLI       
Sbjct: 140 KMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHN 199

Query: 142 K-------VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K       VD M +   +PD V + A++    + G +D A  +L +M  E   ++ D + 
Sbjct: 200 KASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKM--EKGKIEADVVI 257

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGT-PEVYTI--AINCCSQTGDWEFACSVYD 250
              ++        +D A   + + +K   KG  P+V+T    I+C    G W  A  +  
Sbjct: 258 YNTIIDGLCKYKHIDDA---FALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLS 314

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M ++ + P+ V  SALID     GK+  A ++  E   + I   I +YSSL+       
Sbjct: 315 NMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHD 374

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
              +A  ++E M S    P V T N LI   C   ++ + ME+  +M   GL  NT+TY+
Sbjct: 375 RLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYN 434

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
            L+    +  D ++   +  +   DGV P+++ +  ++ G+C   + EKA  + E++
Sbjct: 435 TLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 491



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 110/495 (22%), Positives = 210/495 (42%), Gaps = 52/495 (10%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKA 76
           Y  D+       N      RIS+ + L++ M   G     +  + + H  F +  K+ +A
Sbjct: 146 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHN-KASEA 204

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           +    +  +    P L T+  +++      D + A  +L+ +++  ++AD  +Y T+I  
Sbjct: 205 VALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDG 264

Query: 137 CAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K   +D  F        + ++PD   +N+LI+     G    A  +L+ M      ++
Sbjct: 265 LCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIE--RKIN 322

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ +T  AL+ A    G++  A ++Y  + K +I      Y+  IN        + A  +
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           ++ M  K   P+ V  + LI     A +VE   E+ +E   +G+    ++Y++L+     
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQ 442

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           A +   A ++++ M S  + P + T + L+  LC   +L K + V   ++   + P+  T
Sbjct: 443 AGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYT 502

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLS 427
           Y+I++    +   VE G  L       GV PN++++  +I G C                
Sbjct: 503 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFC---------------- 546

Query: 428 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE-NLG 486
               R  ++ +  +L    +RE    GT+P         GC    YN  IR RL + +  
Sbjct: 547 ----RKGLKEEADAL----FREMKEDGTLPDS-------GC----YNTLIRARLRDGDKA 587

Query: 487 VSADALKRSNLCSLI 501
            SA+ +K    C  +
Sbjct: 588 ASAELIKEMRSCGFV 602



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 135/325 (41%), Gaps = 34/325 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            +++G++ E   L ++M ++ + D D   ++   N       + EA   F+L+ +    P
Sbjct: 335 FVKEGKLVEAEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 393

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
            + T+N L+     +K  E   ++ R + + GL  +                        
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT----------------------- 430

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
               V +N LI    Q+G  D A  +  +M ++  P  PD IT   L+      G++++A
Sbjct: 431 ----VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVP--PDIITYSILLDGLCKYGKLEKA 484

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
             V++ + K  ++     Y I I    + G  E    ++  ++ KGV P+ +  + +I  
Sbjct: 485 LVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISG 544

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G  E A  + +E K  G       Y++L+ A     +   + EL + M+S      
Sbjct: 545 FCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGD 604

Query: 331 VSTMNALITALCDGDQLPKTMEVLS 355
            ST++ +I  L DG      +E+LS
Sbjct: 605 ASTISMVINMLHDGRLEKSYLEMLS 629



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/272 (19%), Positives = 117/272 (43%), Gaps = 13/272 (4%)

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D A  +  EM  +  P+ P  +    L+ A A   + D    + + +    I      Y
Sbjct: 61  LDDAIGLFGEM-VQSRPL-PSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSY 118

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
            I INC  +      A +V   M K G  PD V LS+L++   H+ ++  A  ++ +   
Sbjct: 119 NILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVE 178

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            G     +++++L+          +A+ L + M     +P + T  A++  LC    +  
Sbjct: 179 MGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDL 238

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            + +L  M+   +  + + Y+ ++    +   ++    L ++ +  G+ P++  +  +I 
Sbjct: 239 ALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLIS 298

Query: 410 -MCSR-RYEKA---------RTLNEHVLSFNS 430
            +C+  R+  A         R +N +V++F++
Sbjct: 299 CLCNYGRWSDASRLLSNMIERKINPNVVTFSA 330


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 184/415 (44%), Gaps = 19/415 (4%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF- 81
            +  +N+L+    +  +    I L E M+R G+      Y+      C+ SQ ++  A  
Sbjct: 84  SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 143

Query: 82  -RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +  KL   P++ T + L++     K    A  ++  + E G + D   +TTLI      
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203

Query: 141 GK-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            K       VD M +   +P+ V +  ++    + G +D AF++L +M  E   ++ + +
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM--EAAKIEANVV 261

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
               ++ +       D A  ++  +    ++     Y+  I+C      W  A  +  DM
Sbjct: 262 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDM 321

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            ++ + P+ V  +ALID     GK+  A ++  E   + I   I +YSSL+         
Sbjct: 322 IERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 381

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            +A  ++E M S    P V T N LI   C   ++ + +E+  +M   GL  NT+TY+ L
Sbjct: 382 DEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTL 441

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
           +    +  D +   M+  Q   DGV PN++ +  ++ G+C   + EKA  + E++
Sbjct: 442 IHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 496



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 182/387 (47%), Gaps = 16/387 (4%)

Query: 40  RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RIS+ + L++ M   G     +    + H  F +  K+ +A+    R  +    P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN-KASEAVALVDRMVQRGCQPNLVTY 228

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSGKVDAM-----FEN 149
            ++++      D + AF +L  ++ A ++A+  +Y+T+I + C    + DA+      EN
Sbjct: 229 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMEN 288

Query: 150 --VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             V+P+ + +++LI+          A  +L++M      ++P+ +T  AL+ A    G++
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIER--KINPNVVTFNALIDAFVKEGKL 346

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             A ++Y  + K +I      Y+  IN        + A  +++ M  K   P+ V  + L
Sbjct: 347 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 406

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I+    A +++   E+ +E   +G+    ++Y++L+     A++   A  +++ M S  +
Sbjct: 407 INGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV 466

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P + T N L+  LC   +L K M V   ++   + P   TY+I++    +   VE G  
Sbjct: 467 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 526

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCSR 413
           L       GV P+++++  +I G C +
Sbjct: 527 LFCSLSLKGVKPDVIIYNTMISGFCRK 553



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 156/380 (41%), Gaps = 50/380 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G I    +LL  ME   +     +Y     ++CK +    +A   F  + N   
Sbjct: 233 NGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHE-DDALNLFTEMENKGV 291

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P + T++ L+S   + +    A ++L  + E  +  +   +  LI    K GK+     
Sbjct: 292 RPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEK 351

Query: 144 --DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             D M + ++ PD   +++LI        +D A  +   M ++     P+ +T   L+  
Sbjct: 352 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK--DCFPNVVTYNTLING 409

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              A ++D   E+++ + +  + G    YT  I+   Q  D + A  V+  M   GV P+
Sbjct: 410 FCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPN 469

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  + L+D     GK+E A                                   + ++E
Sbjct: 470 IMTYNTLLDGLCKNGKLEKA-----------------------------------MVVFE 494

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           +++  K++PT+ T N +I  +C   ++    ++   +   G+ P+ I Y+ ++    RK 
Sbjct: 495 YLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKG 554

Query: 381 DVEVGLMLLSQAKEDGVIPN 400
             E    L  + +EDG +P+
Sbjct: 555 LKEEADALFRKMREDGPLPD 574



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/254 (20%), Positives = 106/254 (41%), Gaps = 13/254 (5%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P       L+ A A   + D    + + + +  I      Y I INC  +      A ++
Sbjct: 83  PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
              M K G  P  V LS+L++   H  ++  A  ++ +    G     I++++L+     
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                +A+ L + M     +P + T   ++  LC    +     +L+ M++  +  N + 
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVI 262

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK----------- 417
           YS ++ +  +    +  L L ++ +  GV PN++ +  +I  C   YE+           
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS-CLCNYERWSDASRLLSDM 321

Query: 418 -ARTLNEHVLSFNS 430
             R +N +V++FN+
Sbjct: 322 IERKINPNVVTFNA 335



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/282 (19%), Positives = 112/282 (39%), Gaps = 35/282 (12%)

Query: 223 KGTPEVYTIAINCC----------SQTGDW-------------EFACSVYDDMTKKGVIP 259
           KG P +   +I+ C          S +GD+             + A  ++  M K   +P
Sbjct: 24  KGNPRIAPSSIDLCGMCYWGRAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLP 83

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
                + L+       K +    + ++ +  GIS  + +Y+ L+           AL L 
Sbjct: 84  SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 143

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M  +  +P++ T+++L+   C G ++   + ++  M  +G  P+TIT++ L+      
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-----------RYEKARTLNEHVLS 427
           +     + L+ +  + G  PNLV +  ++ G+C R           + E A+     V+ 
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIY 263

Query: 428 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
                   + +    AL ++ E    G  P V   S ++ CL
Sbjct: 264 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCL 305


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 168/349 (48%), Gaps = 16/349 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P   TF  L+         + AF     V   G   D   Y TLI    K G+  A  + 
Sbjct: 153 PDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRAALDL 212

Query: 150 --------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V+P+ V++N +I +  +   V+ AFD+ +EM ++   + PD +T  AL+   
Sbjct: 213 LQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISK--GISPDVVTYSALISGF 270

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              G+++ A +++  +   NIK  P+VYT  I +N   + G  +   +V+D M K+G+ P
Sbjct: 271 CILGKLNDAIDLFNKMILENIK--PDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKP 328

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V  ++L+D      +V  A  I       G++  I SYS ++      K + +A+ L+
Sbjct: 329 NFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLF 388

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M    + P V T ++LI  L    ++   ++++  M   G+ P   TY+ +L A  + 
Sbjct: 389 KEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKI 448

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
             V+  + LL++ K+ G+ PN+  +  +I G+C S + E AR + E +L
Sbjct: 449 HQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLL 497



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 154/327 (47%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           P +  +N ++      K    AF +   +   G+  D   Y+ LI+     GK++     
Sbjct: 223 PNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDL 282

Query: 145 ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               + EN+KPD   FN L+ A  + G +     V   M  +   + P+ +T  +LM   
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQ--GIKPNFVTYNSLMDGY 340

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               +V++A+ ++  + +  +    + Y+I IN   +   ++ A +++ +M +K +IPD 
Sbjct: 341 CLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDV 400

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  S+LID    +G++  A +++ +  ++G+   I +Y+S++ A        KA+ L   
Sbjct: 401 VTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTK 460

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +K   ++P + T + LI  LC   +L    +V   +   G   N  TY+I++     +  
Sbjct: 461 LKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGL 520

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
               L LLS+ +++G IP+   ++ II
Sbjct: 521 FNEALALLSKMEDNGCIPDAKTYEIII 547



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 176/387 (45%), Gaps = 23/387 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SY  LI    + G     +DLL+ ++   +     +Y+    ++CK  K + EAF  F  
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKV-KLVNEAFDLFSE 250

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + +    P + T++ L+S  C   K ++      +++ E  +K D   +  L+    K G
Sbjct: 251 MISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILE-NIKPDVYTFNILVNAFCKDG 309

Query: 142 KVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K+          M + +KP+ V +N+L+        V++A  +   M      V+PD  +
Sbjct: 310 KMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQG--GVNPDIQS 367

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              ++       + D A  ++K +H+ NI      Y+  I+  S++G   +A  + D M 
Sbjct: 368 YSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMH 427

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNW 312
            +GV P     ++++D      +V+ A  +L + K++GI   + +YS L+ G C + K  
Sbjct: 428 DRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGK-L 486

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           + A +++E +        V T   +I   C      + + +LS M+  G  P+  TY I+
Sbjct: 487 EDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEII 546

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIP 399
           +++  +KD+ ++   LL +    GV P
Sbjct: 547 ILSLFKKDENDMAEKLLREMIARGVRP 573


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 175/402 (43%), Gaps = 19/402 (4%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
            D    + +YN LI    R+G+++  +++ +DMER GL       +     +CK+QK ++
Sbjct: 153 RDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCKAQK-LE 211

Query: 79  EAFRFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA   F+     V  P   TF+ L+         + A+ +   + + G      +YT+LI
Sbjct: 212 EACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLI 271

Query: 135 TTCAKSGK--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
            +  K G+         + +     PD  + N  +    ++G  ++   +  E+NA  H 
Sbjct: 272 RSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINA--HG 329

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             PD  +   L+     AG  +   E++  + +         Y   I+   ++G    A 
Sbjct: 330 FIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAY 389

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            + ++M  KG  P  V   ++ID      +++ A+ + +EAK+ GI + ++ YSSL+   
Sbjct: 390 QLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGF 449

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
                  +A  + E +    L P V T N L+ AL   +++ + +     MK L   PN 
Sbjct: 450 GKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQ 509

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ITYSIL+    R        +   + ++ G+ PN + +  +I
Sbjct: 510 ITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMI 551



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 111/487 (22%), Positives = 188/487 (38%), Gaps = 62/487 (12%)

Query: 71  CKSQKAIKEAF------RFFKLVPNPTLSTFNMLMS-----------VCASSKDSEGAFQ 113
           C   + ++EAF      R FK    P  S + +L+            +C +++  E    
Sbjct: 20  CVKSRKLREAFDIIQTMRKFKF--RPAFSAYTILIGKVGLMLLFPWVLCKANRLDEAVEL 77

Query: 114 VLRLVQEAGLKADCKL-YTTLITTCAKSGKVD---AMFENVK-----PDRVVFNALITAC 164
             +L  E   K  C   Y T+I     +GK D    + E  K     P  + +N ++T  
Sbjct: 78  FEQL--EQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCL 135

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
           G+   V+ A  +  EM  +  P  P   T   L+      G+++ A E+   + +  +  
Sbjct: 136 GKKRRVEEALRIFEEMKRDAVPNVP---TYNILIDMLCREGKLNAALEIRDDMERAGLFP 192

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
                 I I+   +    E ACS+++ M  K   P+ V  S+LID  G  G+V+ A+ + 
Sbjct: 193 NVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLY 252

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
           ++  + G   G I Y+SL+ +       +   ++Y+ M      P ++ +N  +  +   
Sbjct: 253 EKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKA 312

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            +  K   +  ++ + G  P+  +YSIL+    +         L    KE G + +   +
Sbjct: 313 GETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAY 372

Query: 405 KCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVV 462
             +I G C S +  KA  L E                         E  V G  PTV   
Sbjct: 373 NAVIDGFCKSGKVNKAYQLLE-------------------------EMKVKGHPPTVVTY 407

Query: 463 SKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAAS 520
             V+  L      D    L E    +   L      SLIDGFG+      A+ ++EE   
Sbjct: 408 GSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQ 467

Query: 521 FGIVPCV 527
            G+ P V
Sbjct: 468 KGLTPNV 474



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 161/405 (39%), Gaps = 52/405 (12%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           GR+ +   L E M   G +    VY +    FF   + +   K          +P L+  
Sbjct: 243 GRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDLTLI 302

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           N  M     + ++E    + R +   G   D + Y+ LI    K+G  +  +E       
Sbjct: 303 NTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKE 362

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
                D   +NA+I    +SG V++A+ +L EM  + HP  P  +T G+++   A   ++
Sbjct: 363 QGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHP--PTVVTYGSVIDGLAKIDRL 420

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD------- 260
           D A  +++      IK    VY+  I+   + G  + A  + +++ +KG+ P+       
Sbjct: 421 DEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCL 480

Query: 261 ----------------------------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
                                       ++  S LI+      K   AF   QE +  G+
Sbjct: 481 LDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGL 540

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
               I+Y++++   + A N  +A  L+   K+    P  ++ NA+I  L   ++      
Sbjct: 541 KPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSANKAMDAYA 600

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVE----VGLMLLSQAK 393
           +  + +  G   +T T  +LL A  + + +E    VG +L   AK
Sbjct: 601 LFEETRLKGCNIHTKTCVVLLDALHKAECLEQAAIVGAVLKETAK 645


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 179/385 (46%), Gaps = 13/385 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFKLVPNPT 91
           L  +G++ E +   + +  +G       Y      VCK   ++ AI+   R  +    P 
Sbjct: 138 LCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPN 197

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------- 143
           +  ++M++         + A+ +   +   G+  D   Y+ L++     G++        
Sbjct: 198 VVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLN 257

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           + + EN+ PD   +  L+ A  + G V  A +VLA M      V+ D +    LM     
Sbjct: 258 EMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKAC--VNLDVVVYSTLMDGYCL 315

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             +V+ A+ V+  + +  +      Y+I IN   +    + A ++++++ +K ++PD V 
Sbjct: 316 VNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVT 375

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            ++LID    +G++   +++  E  ++G    +I+Y++L+ A     +  +A+ L+  MK
Sbjct: 376 YTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMK 435

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              ++P V T   L+  LC   +L   +E   D+ + G C N  TY++++    ++  ++
Sbjct: 436 DQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLD 495

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
             L L S+ +++G I + V F+ +I
Sbjct: 496 EALALQSRMEDNGCISDAVTFEIMI 520



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 150/362 (41%), Gaps = 17/362 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N + + G     I LL  +ER  +     +Y      +CK    + EA+  +  +     
Sbjct: 171 NGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDT-LVDEAYDLYTEMVGKGI 229

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+++L+S          A  +L  +    +  D   YT L+    K GKV    E
Sbjct: 230 SPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEA-E 288

Query: 149 NV---------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           NV           D VV++ L+        V+ A  V   M      V PD      ++ 
Sbjct: 289 NVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQ--MGVTPDVHCYSIMIN 346

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                 +VD A  +++ IH+ N+      YT  I+C  ++G   +   ++D+M  +G  P
Sbjct: 347 GLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPP 406

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D +  + LID     G ++ A  +  + K+Q I   + +++ L+         + ALE +
Sbjct: 407 DVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFF 466

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + + +      V T   +I  LC    L + + + S M+  G   + +T+ I++ A   K
Sbjct: 467 QDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDK 526

Query: 380 DD 381
           D+
Sbjct: 527 DE 528



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/380 (21%), Positives = 158/380 (41%), Gaps = 27/380 (7%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V+PD    N +I      G V  AF  ++++    +   P+ IT+  LMK     G+V  
Sbjct: 89  VEPDYFTLNIIINCFCHFGQVVLAFSGVSKILKLGY--QPNTITLNTLMKGLCLEGKVKE 146

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A   +  +     + +   Y I IN   + G+   A  +   + +  + P+ V  S +ID
Sbjct: 147 ALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIID 206

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                  V+ A+++  E   +GIS  +++YS L+          +A++L   M    + P
Sbjct: 207 RLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINP 266

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            + T   L+ ALC   ++ +   VL+ M    +  + + YS L+      ++V     + 
Sbjct: 267 DIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVF 326

Query: 390 SQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVY 447
               + GV P++  +  +I G+C  +R ++A  L E                      ++
Sbjct: 327 YTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEE---------------------IH 365

Query: 448 REAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEY 507
           ++ +V  T+    ++  +    ++ Y  D+ + +++  G   D +  +NL   +   G  
Sbjct: 366 QKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDR-GQPPDVITYNNLIDALCKNGHL 424

Query: 508 DPRAFSLLEEAASFGIVPCV 527
           D RA +L  +     I P V
Sbjct: 425 D-RAIALFNKMKDQAIRPNV 443



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 7/205 (3%)

Query: 173 AFDVLAEMNA--EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
           A D +++ N    VHP  P       ++ +  N  +   A  +YK +    ++  P+ +T
Sbjct: 39  ADDAVSQFNHMFHVHPT-PHTFHFNKILISLVNVKRYPTAISLYKQMELSEVE--PDYFT 95

Query: 231 --IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
             I INC    G    A S    + K G  P+ + L+ L+      GKV+ A     +  
Sbjct: 96  LNIIINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVL 155

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            QG  +  ISY  L+         + A+ L   ++   ++P V   + +I  LC    + 
Sbjct: 156 AQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVD 215

Query: 349 KTMEVLSDMKSLGLCPNTITYSILL 373
           +  ++ ++M   G+ P+ +TYSIL+
Sbjct: 216 EAYDLYTEMVGKGISPDVVTYSILV 240


>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
 gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
          Length = 877

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 174/385 (45%), Gaps = 15/385 (3%)

Query: 47  LLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           L+ +ME +G+     +YH     +  +   +K +    R  +    P++ ++  L+++  
Sbjct: 400 LVREMEEEGIDAPIDIYHTMMNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYT 459

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT--------TCAKSGKVDAMFENVKPDRV 155
                  A +V ++++ AG+K + K Y+ LI         T A +   D + + +KPD V
Sbjct: 460 KMGKVSKALEVSKMMESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVV 519

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           ++N +I A    G +DRA  ++ EM  + H   P   T   ++   A AG++ RA E++ 
Sbjct: 520 LYNNIIKAFCGMGNMDRAIHMVKEMQKKRH--RPTSRTFMPIIHGFARAGEMRRALEIFD 577

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
           M+ +     T   +   +    +    E A  + D+M   GV PDE   + +++     G
Sbjct: 578 MMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALG 637

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
               AFE   + +N+G+ + + +Y +L+ AC  +   Q AL +   M +  +       N
Sbjct: 638 DTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYN 697

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI        + +  +++  MK  G+ P+  TY+  + AC +  D+      + + +  
Sbjct: 698 ILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTIQEMEAL 757

Query: 396 GVIPNLVMFKCII--GMCSRRYEKA 418
           GV PN+  +  +I    C+   EKA
Sbjct: 758 GVKPNVKTYTTLIHGWACASLPEKA 782



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/369 (22%), Positives = 170/369 (46%), Gaps = 27/369 (7%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
           Y+AR  ++ ++++   E+ R   + P+  +  +  L+   A  +D E A   +R ++E G
Sbjct: 311 YYARRGDMHRARQTF-ESMRVRGIYPSSHV--YTSLIHAYAVGRDMEEALSCVRKMKEEG 367

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEM-- 180
           ++     Y+ ++   AK G  D   ++   DR    +L+    + G +D   D+   M  
Sbjct: 368 VEMSLVTYSIVVGGFAKIGNAD---QSCNMDRA--ESLVREMEEEG-IDAPIDIYHTMMN 421

Query: 181 ------NAEVHPV----------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
                 N E   +           P  I+ G L+      G+V +A EV KM+    IK 
Sbjct: 422 GYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGIKH 481

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
             + Y++ IN   +  DW  A +V++D+ K G+ PD V  + +I      G ++ A  ++
Sbjct: 482 NMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMV 541

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
           +E + +       ++  ++   + A   ++ALE+++ M+     PTV T NAL+  L + 
Sbjct: 542 KEMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEK 601

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            Q+ K +E+L +M   G+ P+  TY+ ++       D        ++ + +G+  ++  +
Sbjct: 602 RQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTY 661

Query: 405 KCIIGMCSR 413
           + ++  C +
Sbjct: 662 EALLKACCK 670



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 170/402 (42%), Gaps = 31/402 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   + G++S+ +++ + ME  G+    K Y +   N     K    AF  F+ V     
Sbjct: 456 NMYTKMGKVSKALEVSKMMESAGIKHNMKTY-SMLINGFLKLKDWTNAFTVFEDVIKDGL 514

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  +N ++       + + A  +++ +Q+   +   + +  +I   A++G++    E
Sbjct: 515 KPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAGEMRRALE 574

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      P    FNAL+    +   +++A ++L EM   +  V PD  T   +M  
Sbjct: 575 IFDMMRRSGCIPTVHTFNALVLGLVEKRQMEKAVEILDEM--ALAGVSPDEHTYTTIMNG 632

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A  G   +A E +  +    ++     Y   +  C ++G  + A +V  +M+ + +  +
Sbjct: 633 YAALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQNIPRN 692

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID     G V  A +++Q+ K +G+   I +Y+S + AC  A +  +A +  +
Sbjct: 693 TFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTIQ 752

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+++ +KP V T   LI          K +    +MK  GL P+   Y  L+ +     
Sbjct: 753 EMEALGVKPNVKTYTTLIHGWACASLPEKALRCFEEMKLAGLKPDKAVYHCLMTS----- 807

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
                  LLS+A     +    ++  I+ +C    E   T++
Sbjct: 808 -------LLSRA----TVAEAYIYSGILSICREMIESELTVD 838



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 102/226 (45%), Gaps = 6/226 (2%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P     G ++   A  G + RAR+ ++ +    I  +  VYT  I+  +   D E A S 
Sbjct: 300 PARREFGLMVGYYARRGDMHRARQTFESMRVRGIYPSSHVYTSLIHAYAVGRDMEEALSC 359

Query: 249 YDDMTKKGVIPDEVFLS------ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
              M ++GV    V  S      A I  A  +  ++ A  +++E + +GI   I  Y ++
Sbjct: 360 VRKMKEEGVEMSLVTYSIVVGGFAKIGNADQSCNMDRAESLVREMEEEGIDAPIDIYHTM 419

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           M   +   N +K L +++ +K     P+V +   LI       ++ K +EV   M+S G+
Sbjct: 420 MNGYTMIGNEEKCLIVFKRLKECGFAPSVISYGCLINMYTKMGKVSKALEVSKMMESAGI 479

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             N  TYS+L+    +  D      +     +DG+ P++V++  II
Sbjct: 480 KHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNII 525



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
           +  +NWQ  +  +E +K    KP       ++        + +  +    M+  G+ P++
Sbjct: 282 TQPENWQAVVSAFERIK----KPARREFGLMVGYYARRGDMHRARQTFESMRVRGIYPSS 337

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
             Y+ L+ A     D+E  L  + + KE+GV  +LV +  ++G
Sbjct: 338 HVYTSLIHAYAVGRDMEEALSCVRKMKEEGVEMSLVTYSIVVG 380


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 185/402 (46%), Gaps = 24/402 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           +QG++ +   L E M   G+   D + +    +    +  + EA R ++ + +    P++
Sbjct: 20  KQGKLRDGYKLFEQMLDNGI-SPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSI 78

Query: 93  STFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
            T+N L+ + C  +K  E A ++ + + E G + D   Y+T+I+   K+GKV    E   
Sbjct: 79  YTYNSLLNAFCKETKMKE-AMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALEMLF 137

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                     + V +NALI    +   ++RA+ +L EM ++ +   PD+IT   ++    
Sbjct: 138 HKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYV--PDNITYNTILSGLC 195

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G+V  A++ +  +           Y   ++   + G  + A  ++ D+  KG +PD V
Sbjct: 196 RMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTV 255

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             ++++        ++ A E+ ++    G +    +YS ++     AK    A ++ E M
Sbjct: 256 TYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEM 315

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
             I   P V T N L+  LC  + + K  E+ S M   G  P+ ++YS++L    + + V
Sbjct: 316 SKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKV 375

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNE 423
               +L  +  E  ++P++V F  ++ G+C     KA  L+E
Sbjct: 376 HDARVLFDRMIERKLVPDVVTFNILMDGLC-----KAGKLDE 412



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 175/391 (44%), Gaps = 22/391 (5%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR- 82
            +++YN L+    ++ ++ E ++L + M  KG       Y      +CK+ K + EA   
Sbjct: 77  SIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGK-VTEALEM 135

Query: 83  -FFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
            F K++    +     +N L++     ++ E A+++L  +   G   D   Y T+++   
Sbjct: 136 LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLC 195

Query: 139 KSGKV-------DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           + GKV       D+M      PD V +N L+ A  + G  D A  +  ++ A+ +   PD
Sbjct: 196 RMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYM--PD 253

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +T  +++   A    +D A E++K +           Y+I ++   +    + A  V +
Sbjct: 254 TVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLE 313

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M+K G +PD V  + L+D       V+ A E+     + G +  I+SYS ++       
Sbjct: 314 EMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTN 373

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
               A  L++ M   KL P V T N L+  LC   +L +  ++L  M   G  P+ + Y+
Sbjct: 374 KVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYN 433

Query: 371 ILLVACERKDDVEVGLMLLSQA-KEDGVIPN 400
            L+    RK    +    L+QA KE G + +
Sbjct: 434 TLMNGL-RKQGRHIQADRLTQAMKEKGFLSD 463



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 154/335 (45%), Gaps = 16/335 (4%)

Query: 89  NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-- 145
           +P   TF +++ S C   K  +G +++   + + G+  D   Y  LI   AK G+VD   
Sbjct: 5   SPNRYTFRVVLKSFCKQGKLRDG-YKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 146 -MFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            ++E      ++P    +N+L+ A  +   +  A ++   M AE    +PD +T   ++ 
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTM-AE-KGFEPDVVTYSTIIS 121

Query: 200 ACANAGQVDRAREV--YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
                G+V  A E+  +KMI +         Y   IN   +  + E A  + ++M  KG 
Sbjct: 122 GLCKTGKVTEALEMLFHKMIER-GCSANTVAYNALINGLCKDENIERAYKLLEEMASKGY 180

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
           +PD +  + ++      GKV  A +      ++G S  +++Y+ L+ A        +A++
Sbjct: 181 VPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMK 240

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L++ + +    P   T N+++  L     + +  E+   M + G  PN  TYSI+L    
Sbjct: 241 LFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHC 300

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           R   V+    +L +  + G +P++V +  ++ G+C
Sbjct: 301 RAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLC 335



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 147/321 (45%), Gaps = 19/321 (5%)

Query: 225 TPEVYTIAI---NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           +P  YT  +   + C Q G       +++ M   G+ PD +  + LID     G+V+ A 
Sbjct: 5   SPNRYTFRVVLKSFCKQ-GKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEAN 63

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
            + +E  + G+   I +Y+SL+ A       ++A+EL++ M     +P V T + +I+ L
Sbjct: 64  RLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGL 123

Query: 342 CDGDQLPKTMEVL-SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           C   ++ + +E+L   M   G   NT+ Y+ L+    + +++E    LL +    G +P+
Sbjct: 124 CKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPD 183

Query: 401 LVMFKCII-GMC-------SRRY---EKARTLNEHVLSFNSGRPQIENKW-TSLALMVYR 448
            + +  I+ G+C       ++++     +R  +  V+++N     +  +  T  A+ +++
Sbjct: 184 NITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFK 243

Query: 449 EAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GE 506
           + I  G +P     + +L  L    N D  E + + +  S  A   +    ++ G    +
Sbjct: 244 DVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAK 303

Query: 507 YDPRAFSLLEEAASFGIVPCV 527
               A  +LEE +  G VP V
Sbjct: 304 KVDDAHKVLEEMSKIGAVPDV 324


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 165/353 (46%), Gaps = 17/353 (4%)

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A RFF  +      P + T+N L+      +  +  F++LR +   GL+ +   Y  +I 
Sbjct: 224 ALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVIN 283

Query: 136 TCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              + G++  +              D V +N LI    + G   +A  + AEM    H +
Sbjct: 284 GLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR--HGL 341

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P  IT  +L+ +   AG ++RA E    +    +      YT  ++  SQ G    A  
Sbjct: 342 SPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYR 401

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           V  +M   G  P  V  +ALI+    AGK+  A  +L++ K +G++  ++SYS+++    
Sbjct: 402 VLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFC 461

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            + +  +AL +   M +  +KP   T ++LI   C+  +  +  ++  +M  +GL P+  
Sbjct: 462 RSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEF 521

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 420
           TY+ L+ A   + D++  + L ++  E GV+P++V +  +I   ++   +ART
Sbjct: 522 TYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNK---QART 571



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 183/405 (45%), Gaps = 21/405 (5%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  + +YN LIR     G +   +   + ME+KG L     Y+      CK +K I + 
Sbjct: 201 VSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRK-IDDG 259

Query: 81  FRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           F   + +      P L ++N++++ +C   +  E +F VL  + + G   D   Y TLI 
Sbjct: 260 FELLRSMALKGLEPNLISYNVVINGLCREGRMKEISF-VLTEMNKRGYSLDEVTYNTLIK 318

Query: 136 TCAKSGK--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K G          + +   + P  + + +LI +  ++G ++RA + L +M   V  +
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQM--RVRGL 376

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P+  T   L+   +  G ++ A  V K +       +   Y   IN     G    A +
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIA 436

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           V +DM +KG+ PD V  S ++     +  V+ A  + ++   +GI    I+YSSL+    
Sbjct: 437 VLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFC 496

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
             +  ++A +L++ M  + L P   T  ALI A C    L K +++ ++M   G+ P+ +
Sbjct: 497 EQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVV 556

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           TYS+L+    ++        LL +   +  +P+ V +  +I  CS
Sbjct: 557 TYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCS 601



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/437 (22%), Positives = 180/437 (41%), Gaps = 71/437 (16%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK-----EAF 81
           +YN LI+    +G   + + +  +M R GL      Y +   ++CK+    +     +  
Sbjct: 312 TYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQM 371

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R   L PN    T+  L+   +       A++VL+ + + G       Y  LI     +G
Sbjct: 372 RVRGLCPNE--RTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAG 429

Query: 142 K-VDAM--FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K VDA+   E++K     PD V ++ +++   +S  VD A  V  +M A+   + PD IT
Sbjct: 430 KMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAK--GIKPDTIT 487

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +L++      +   A +++  + +  +      YT  IN     GD + A  ++++M 
Sbjct: 488 YSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMV 547

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK--- 310
           +KGV+PD V  S LI+      +   A  +L +   +      ++Y +L+  CSN +   
Sbjct: 548 EKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKS 607

Query: 311 ------------NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
                          +A +++E M     KP  +  N +I   C G  + K   +  +M 
Sbjct: 608 VVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMV 667

Query: 359 SLGLCPNTITYSIL--------------------LVACE---------------RKDDVE 383
             G   +T+T   L                    L +CE               R+ +++
Sbjct: 668 KSGFLLHTVTVIALVKTLHKEGKVNELNSVIANVLRSCELSEAEQAKVLVEINHREGNMD 727

Query: 384 VGLMLLSQAKEDGVIPN 400
           V L +L++  +DG +PN
Sbjct: 728 VVLDVLAEMAKDGFLPN 744



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 116/268 (43%), Gaps = 19/268 (7%)

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMN 335
           ++ A  I+  ++  G   G++SY++++ A   +K N   A  +++ M   ++ P V T N
Sbjct: 150 IDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYN 209

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI   C    L   +     M+  G  PN +TY+ L+    +   ++ G  LL      
Sbjct: 210 ILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALK 269

Query: 396 GVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS-GRPQIENKWTSL----------- 442
           G+ PNL+ +  +I G+C  R  + + ++  +   N  G    E  + +L           
Sbjct: 270 GLEPNLISYNVVINGLC--REGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFH 327

Query: 443 -ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLI 501
            AL+++ E +  G  P+V   + ++  +    N +     ++ + V           +L+
Sbjct: 328 QALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLV 387

Query: 502 DGFGE--YDPRAFSLLEEAASFGIVPCV 527
           DGF +  Y   A+ +L+E    G  P V
Sbjct: 388 DGFSQKGYMNEAYRVLKEMIDNGFSPSV 415


>gi|302835181|ref|XP_002949152.1| hypothetical protein VOLCADRAFT_104228 [Volvox carteri f.
           nagariensis]
 gi|300265454|gb|EFJ49645.1| hypothetical protein VOLCADRAFT_104228 [Volvox carteri f.
           nagariensis]
          Length = 1363

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/315 (25%), Positives = 148/315 (46%), Gaps = 27/315 (8%)

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVV---- 156
           VC +  + + A +V   ++  G + D  +Y  LI TCA++ K D    + + D+ V    
Sbjct: 228 VCKAVGNVDKAHRVYLDMRAGGHRIDSHVYGALIATCAEAMKRDLTVMHERKDQYVLLER 287

Query: 157 -------------------FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
                              +N+L+   G+SG ++RAF+VL  M  +   +     T G+L
Sbjct: 288 AFQYVADAEAAGVVLQAPVWNSLMVCAGRSGELNRAFEVLTMM--QQRGISASATTYGSL 345

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC--SQTGDWEFACSVYDDMTKK 255
           +++C  A Q ++A  V+++  +   +   ++YT A++ C       WE A  +Y  M + 
Sbjct: 346 IESCVCARQPEKALRVFEVALQKGFQSEVKIYTQALSACMLPLPHAWERAQDIYPAMQRA 405

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            V  D+ F + L+  AG  G+++ +FE+L E   +GI     + S+++ AC    N   A
Sbjct: 406 SVRADKKFFACLMAVAGRCGRLDTSFELLTEMAAEGIRPSATTISAIIYACLERGNLALA 465

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             +Y+     K+ P +S  N ++       +  + + +LSDM + G  PN  TY I++ A
Sbjct: 466 RRVYDLGARQKVYPVLSQFNRMMDVYASECRFGEVVSLLSDMVAAGRSPNLNTYRIIINA 525

Query: 376 CERKDDVEVGLMLLS 390
           C   D   +   + +
Sbjct: 526 CAFTDQAGLAFQVFA 540



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 96/429 (22%), Positives = 175/429 (40%), Gaps = 52/429 (12%)

Query: 20  NYAHDVSEQLHSYNRLIRQGRISE----CIDLLEDMERKGLL-------------DMDKV 62
           N     S   HS   L+ + + S+    C+  L+++ R+G L             D + +
Sbjct: 64  NVPASTSYSEHSLESLVAKFKSSQSKHGCLSALKELTRRGELELLIRGLQELSKPDQEAI 123

Query: 63  YHARFFN-----VCKSQKAIKEAFRFFKL-VPN---PTLSTFNMLMSVCASSKDSEGAFQ 113
           +    +      V ++QKA K A +F KL VPN   P L T ++L + CA  +D +    
Sbjct: 124 FRRWRYQDFLDAVTRNQKA-KLALQFAKLAVPNVHKPALLTMSVLKT-CAKCRDLDAGMT 181

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALIT-ACGQSGAVDR 172
           VL L ++  +  D  + T+LI   + +  +      +     +F   I   C   G VD+
Sbjct: 182 VLELARKHAVPIDSHMLTSLINAPSAARLLRPPPPPM----AIFALHINPVCKAVGNVDK 237

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD---------------RAREVYKMI 217
           A  V  +M A  H +D  H+  GAL+  CA A + D               RA +     
Sbjct: 238 AHRVYLDMRAGGHRID-SHV-YGALIATCAEAMKRDLTVMHERKDQYVLLERAFQYVADA 295

Query: 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 277
               +     V+   + C  ++G+   A  V   M ++G+        +LI+    A + 
Sbjct: 296 EAAGVVLQAPVWNSLMVCAGRSGELNRAFEVLTMMQQRGISASATTYGSLIESCVCARQP 355

Query: 278 EAAFEILQEAKNQGISVGIISYSSLMGAC--SNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           E A  + + A  +G    +  Y+  + AC       W++A ++Y  M+   ++       
Sbjct: 356 EKALRVFEVALQKGFQSEVKIYTQALSACMLPLPHAWERAQDIYPAMQRASVRADKKFFA 415

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            L+       +L  + E+L++M + G+ P+  T S ++ AC  + ++ +   +       
Sbjct: 416 CLMAVAGRCGRLDTSFELLTEMAAEGIRPSATTISAIIYACLERGNLALARRVYDLGARQ 475

Query: 396 GVIPNLVMF 404
            V P L  F
Sbjct: 476 KVYPVLSQF 484


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 180/407 (44%), Gaps = 19/407 (4%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF-- 81
           +  +N+L+    +  +    I L E M+R G+      Y+      C+ SQ ++  A   
Sbjct: 10  IFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLG 69

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +  KL   P++ T + L++     K    A  ++  + E G + D   +TTLI       
Sbjct: 70  KMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 129

Query: 142 K-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K       VD M +   +P+ V +  ++    + G +D AF++L +M  E   ++ D + 
Sbjct: 130 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM--EAAKIEADVVI 187

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              ++ +      VD A  ++K +    I+     Y+  I+C    G W  A  +  DM 
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +K + P+ V  +ALID     GK   A ++  +   + I   I +Y+SL+          
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA +++E M S    P + T N LI   C   ++    E+  +M   GL  +T+TY+ L+
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 418
                  D +    +  Q   DGV P+++ +  ++ G+C+  + EKA
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKA 414



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 181/397 (45%), Gaps = 17/397 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L    + SE + L++ M ++G       Y      +CK +  I  AF     +    +  
Sbjct: 125 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCK-RGDIDLAFNLLNKMEAAKIEA 183

Query: 95  ----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------- 142
               FN ++      +  + A  + + ++  G++ +   Y++LI+     G+        
Sbjct: 184 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 243

Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
            D + + + P+ V FNALI A  + G    A  +  +M      +DPD  T  +L+    
Sbjct: 244 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKR--SIDPDIFTYNSLINGFC 301

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              ++D+A+++++ +   +     + Y   I    ++   E    ++ +M+ +G++ D V
Sbjct: 302 MHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 361

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEH 321
             + LI    H G  + A ++ ++  + G+   I++YS L+ G C+N K  +KALE++++
Sbjct: 362 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK-LEKALEVFDY 420

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+  ++K  +     +I  +C   ++    ++   +   G+ PN +TY+ ++     K  
Sbjct: 421 MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRL 480

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
           ++    LL + KEDG +P+   +  +I    R  +KA
Sbjct: 481 LQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKA 517



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 155/361 (42%), Gaps = 15/361 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G I    +LL  ME   +     +++    ++CK  + + +A   FK +     
Sbjct: 158 NGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK-YRHVDDALNLFKEMETKGI 216

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P + T++ L+S   S      A Q+L  + E  +  +   +  LI    K GK      
Sbjct: 217 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 276

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              D +  ++ PD   +N+LI        +D+A  +   M ++     PD  T   L+K 
Sbjct: 277 LHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSK--DCFPDLDTYNTLIKG 334

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              + +V+   E+++ +    + G    YT  I      GD + A  V+  M   GV PD
Sbjct: 335 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 394

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  S L+D   + GK+E A E+    +   I + I  Y++++     A       +L+ 
Sbjct: 395 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 454

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            +    +KP V T N +I+ LC    L +   +L  MK  G  P++ TY+ L+ A  R  
Sbjct: 455 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDG 514

Query: 381 D 381
           D
Sbjct: 515 D 515



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 149/343 (43%), Gaps = 23/343 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           + L +   + + ++L ++ME KG+      Y +    +C   +    +     ++    N
Sbjct: 193 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 252

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK----ADCKLYTTLITTCAKSGKVDA 145
           P L TFN L+         EG F     + +  +K     D   Y +LI       ++D 
Sbjct: 253 PNLVTFNALIDAFVK----EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDK 308

Query: 146 ---MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
              MFE     +  PD   +N LI    +S  V+   ++  EM+     +  D +T   L
Sbjct: 309 AKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHR--GLVGDTVTYTTL 366

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           ++   + G  D A++V+K +    +      Y+I ++     G  E A  V+D M K  +
Sbjct: 367 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 426

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             D    + +I+    AGKV+  +++      +G+   +++Y++++    + +  Q+A  
Sbjct: 427 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 486

Query: 318 LYEHMKSIKLKPTVSTMNALITA-LCDGDQLPKTMEVLSDMKS 359
           L + MK     P   T N LI A L DGD+   + E++ +M+S
Sbjct: 487 LLKKMKEDGPLPDSGTYNTLIRAHLRDGDK-AASAELIREMRS 528



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 144/343 (41%), Gaps = 46/343 (13%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  L ++N LI    ++G+  E   L +DM ++ + D D   +    N       + +A
Sbjct: 251 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI-DPDIFTYNSLINGFCMHDRLDKA 309

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            + F+ + +    P L T+N L+     SK  E   ++ R +   GL  D   YTTLI  
Sbjct: 310 KQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ- 368

Query: 137 CAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                    +F +                  G  D A  V  +M ++  P  PD +T   
Sbjct: 369 --------GLFHD------------------GDCDNAQKVFKQMVSDGVP--PDIMTYSI 400

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD----WEFACSVYDDM 252
           L+    N G++++A EV+  + K  IK    +YT  I    + G     W+  CS    +
Sbjct: 401 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS----L 456

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
           + KGV P+ V  + +I        ++ A+ +L++ K  G      +Y++L+ A     + 
Sbjct: 457 SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDK 516

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
             + EL   M+S +     ST+  +   L DG      +++LS
Sbjct: 517 AASAELIREMRSCRFVGDASTIGLVANMLHDGRLDKSFLDMLS 559



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/253 (19%), Positives = 108/253 (42%), Gaps = 11/253 (4%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P       L+ A A   + D    + + + +  I      Y I INC  +      A ++
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
              M K G  P  V LS+L++   H  ++  A  ++ +    G     I++++L+     
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                +A+ L + M     +P + T   ++  LC    +     +L+ M++  +  + + 
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKA-------- 418
           ++ ++ +  +   V+  L L  + +  G+ PN+V +  +I  +CS  R+  A        
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 419 -RTLNEHVLSFNS 430
            + +N ++++FN+
Sbjct: 248 EKKINPNLVTFNA 260



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 101/231 (43%), Gaps = 14/231 (6%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M K   +P     + L+       K +    + ++ +  GIS  + +Y+ L+        
Sbjct: 1   MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
              AL L   M  +  +P++ T+++L+   C G ++   + ++  M  +G  P+TIT++ 
Sbjct: 61  ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-----------RYEKAR 419
           L+      +     + L+ +  + G  PNLV +  ++ G+C R           + E A+
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 180

Query: 420 TLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
            +   V+ FN+    + + +    AL +++E    G  P V   S ++ CL
Sbjct: 181 -IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 230


>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 189/428 (44%), Gaps = 24/428 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   ++G + E   L + ++  G    + + +    N     + I +A   ++ +     
Sbjct: 134 NAFCKEGNVVEARKLFDGLKEMGF-SPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGI 192

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   TFN+L+S        E   ++L+ +   GL  D  L+   ++    +G++D   E
Sbjct: 193 APDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAME 252

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMK 199
                    + P  + FN++I A  Q+G  D+AF+    M   VH  + P   T  +L+ 
Sbjct: 253 FLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLM---VHFGLTPSPSTCSSLLM 309

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
             +  G++  A E+   + +  +      +T+ ++   + GD   A S++ +M ++G+ P
Sbjct: 310 GLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFP 369

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  SA ID     G VE A+ +  E   +G+     +Y+SL+          +AL+L 
Sbjct: 370 DVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLE 429

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M+   L P + T N +I  LC   ++   + V  DM   GL P+ ITY+ L+    + 
Sbjct: 430 KVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKA 489

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA-----RTLNEHVLSFNSGR 432
            D+     L+++    G  P+L  +   I G C SRR  +A       ++  +LSF+   
Sbjct: 490 FDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGILSFSFAC 549

Query: 433 PQIENKWT 440
           P   N  T
Sbjct: 550 PPTLNAHT 557



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 149/339 (43%), Gaps = 18/339 (5%)

Query: 88  PNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--- 143
           P P   TF+ +++  C       G   +L L+ +   + +   Y  +I  C   G+    
Sbjct: 52  PQPCKYTFSGIILGFCRKGCIHLGE-SLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDA 110

Query: 144 ----DAMFE-NVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIG 195
               + M E    P  V FN +I A  + G V  A   FD L EM        P+ I   
Sbjct: 111 LAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMG-----FSPNAIMYN 165

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            LM       ++D+A  +Y+ + K  I      + I ++   + G  E    +  D++  
Sbjct: 166 TLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVL 225

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G++PD       +     AG+++ A E L +   +G+S  II+++S++ A S A    KA
Sbjct: 226 GLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKA 285

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            E Y+ M    L P+ ST ++L+  L    +L +  E++  M   GL  N + +++LL  
Sbjct: 286 FEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDK 345

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
             ++ DV     L  + +  G+ P++V F   I   S++
Sbjct: 346 FFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQ 384



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 151/361 (41%), Gaps = 66/361 (18%)

Query: 31  SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK----EAFRF--- 83
           S + L   GR+ E ++ L DM  KGL      +++       SQ  ++    EA++    
Sbjct: 237 SVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVI--AAYSQAGLEDKAFEAYKLMVH 294

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F L P+P+  + ++LM +  + +  E A +++  + E GL  +   +T L+    K G V
Sbjct: 295 FGLTPSPSTCS-SLLMGLSINGRLQE-ATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDV 352

Query: 144 --------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                   +     + PD V F+A I    + G V+ A++V  EM  +   + P++    
Sbjct: 353 VGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRK--GLIPNNFAYN 410

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMT 253
           +L+      G+++ A ++ K++    +   P+++T  + I    + G    A +V+ DM 
Sbjct: 411 SLICGFCKCGKLNEALKLEKVMRHRGL--LPDIFTTNMIIGGLCKQGRMRSAINVFMDMH 468

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + G+ PD                                   II+Y++L+     A +  
Sbjct: 469 QTGLSPD-----------------------------------IITYNTLINGYCKAFDMV 493

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL------CPNTI 367
            A  L   M +    P ++T N  I   C   ++ + + +L ++ S G+      CP T+
Sbjct: 494 NADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGILSFSFACPPTL 553

Query: 368 T 368
            
Sbjct: 554 N 554


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 200/450 (44%), Gaps = 40/450 (8%)

Query: 13  YPNGKHANYAHDVSEQLHS------YNRLI---RQGR-ISECIDLLEDMERKGLLDMDKV 62
           Y   +  + A +V+E+L S      YN L+    Q R   + ++ L  M+  G    D V
Sbjct: 154 YGRERKLHKALEVAEKLGSNLQRRGYNALVGAYAQNRDYGKALETLSKMKTLGF-PPDVV 212

Query: 63  YHARFFNVCKSQKA-IKEAFRFFKLVPNPTLST----FNMLMSVCASS-KDSEGAFQVLR 116
            +      C+     I   FR F+ +    +      +N L+  C  + K +EG F  L 
Sbjct: 213 SYTHVIQACRHGVVDIYTGFRLFQEMQAEGVQVDGKVYNDLIFACGQAHKPNEGMF-FLE 271

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKV---DAMFENVK-----PDRVVFNALI---TACG 165
            +Q +GL AD   Y +L+ +  K G+    +A+ E +K     P+   +N L+   +  G
Sbjct: 272 KLQASGLVADRDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKG 331

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
           Q   +D    +L +    +     + IT   L+ A A AG +DR   +Y+ +   +I+  
Sbjct: 332 QLQQIDTVKTLLRDTGMSI-----NKITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPN 386

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
             +Y   I     TG W+    +  +M + GV PD    + +I+  G   ++E A     
Sbjct: 387 TYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFF 446

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           + ++ GI   ++S++SL+ AC  A    +A +LY  M +    PT  T N +I  L +  
Sbjct: 447 KMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHK 506

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           +     E++ +M+S G+ PN +TY+ L+    +    +  +  L   KEDG+ P+   + 
Sbjct: 507 RWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYS 566

Query: 406 CI------IGMCSRRYEKARTLNEHVLSFN 429
            +      +GMC +     +T+ +  +  N
Sbjct: 567 ALANAYAQLGMCEQTLHVLQTMEKENIEIN 596



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 163/364 (44%), Gaps = 20/364 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAFRFFKLVPN 89
           L + GR +E   LLE+M+  GL    K Y+       +  +      +K   R   +  N
Sbjct: 292 LGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQQIDTVKTLLRDTGMSIN 351

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----VDA 145
               T+ +L+   A +   +    + + +++  ++ +  +Y  +IT    +G+    V  
Sbjct: 352 KI--TYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQWQKGVKL 409

Query: 146 MFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           + E     V PD  V+N +I   G++  +++A   +A    +   ++PD ++  +L+ AC
Sbjct: 410 LREMQQAGVTPDAHVYNVIINTFGRTRQLEQA--RIAFFKMQDGGIEPDVVSWNSLIDAC 467

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AGQ   AR++Y  +       T + + I I+   +   W     + ++M  KG+ P+ 
Sbjct: 468 CKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSKGMFPNV 527

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L+D    A   + A E LQ  K  G+     +YS+L  A +     ++ L + + 
Sbjct: 528 VTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQT 587

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACER 378
           M+   ++  ++ +N LI A     +  +   V   +K  GL  + ITY+ L   L+  E+
Sbjct: 588 MEKENIEINLAMLNLLINAFSMAGRSQEAFAVFEYIKEAGLTADKITYTTLMKALIRAEK 647

Query: 379 KDDV 382
            D+V
Sbjct: 648 LDEV 651



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 171/400 (42%), Gaps = 22/400 (5%)

Query: 31  SYNRLIRQGR-----ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           SY  +I+  R     I     L ++M+ +G+    KVY+   F   ++ K  +  F   K
Sbjct: 213 SYTHVIQACRHGVVDIYTGFRLFQEMQAEGVQVDGKVYNDLIFACGQAHKPNEGMFFLEK 272

Query: 86  LVPNPTL----STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           L  +  +    S  ++++S+    + +E A  +L  ++  GL+ + K Y TL+   ++ G
Sbjct: 273 LQASGLVADRDSYISLMLSLGKHGRTAE-AEALLEEMKWYGLRPNLKAYNTLLGGYSRKG 331

Query: 142 KVDAMFENVKP---------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           ++  + + VK          +++ +  LI A  ++G +DR   +  EM      + P+  
Sbjct: 332 QLQQI-DTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRD--CDIRPNTY 388

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
               ++    + GQ  +  ++ + + +  +     VY + IN   +T   E A   +  M
Sbjct: 389 MYARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKM 448

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
              G+ PD V  ++LID    AG+   A ++  +  N G +    +++ ++      K W
Sbjct: 449 QDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRW 508

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
               E+ E M+S  + P V T   L+            +E L  MK  G+ P+   YS L
Sbjct: 509 NDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSAL 568

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
             A  +    E  L +L   +++ +  NL M   +I   S
Sbjct: 569 ANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLINAFS 608



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 168/375 (44%), Gaps = 33/375 (8%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN------VCKSQKAIK 78
           L +YN L+    R+G++ + ID ++ + R   + ++K+ +    +      +    +A+ 
Sbjct: 317 LKAYNTLLGGYSRKGQLQQ-IDTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALY 375

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           +  R   + PN  +  +  ++++   +   +   ++LR +Q+AG+  D  +Y  +I T  
Sbjct: 376 QEMRDCDIRPNTYM--YARMITIYRDTGQWQKGVKLLREMQQAGVTPDAHVYNVIINTFG 433

Query: 139 KSGKVD----AMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDP 189
           ++ +++    A F+     ++PD V +N+LI AC ++G    A  +  +M N    P   
Sbjct: 434 RTRQLEQARIAFFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQ 493

Query: 190 D-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQTGDWEFA 245
             +I I  L       G+  R  +V +M+ +   KG  P V  YT  ++  +Q   ++ A
Sbjct: 494 TFNIVIHGL-------GEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDA 546

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
                 M + G+ P     SAL +     G  E    +LQ  + + I + +   + L+ A
Sbjct: 547 VECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLINA 606

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
            S A   Q+A  ++E++K   L     T   L+ AL   ++L +   V  +M   G  P+
Sbjct: 607 FSMAGRSQEAFAVFEYIKEAGLTADKITYTTLMKALIRAEKLDEVSGVFDEMIKAGCRPD 666

Query: 366 TITYSILLVACERKD 380
                +L  A   K+
Sbjct: 667 GKAKDMLRSAFRFKE 681


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 190/418 (45%), Gaps = 53/418 (12%)

Query: 73  SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           S  ++  A RFF  + +    P + T+N+L+         + A  +LR ++ AG      
Sbjct: 127 SDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAG------ 180

Query: 129 LYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
                   C              P+ V +N L+ A  ++G VD A  ++  M      + 
Sbjct: 181 --------CG-------------PNVVTYNTLVAAFFRAGEVDGAERLVGMMLDG--GLK 217

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ +T  +++     AG+++ AR+V+  + +  +      Y   +    + G    A SV
Sbjct: 218 PNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSV 277

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           + +MT+KG++PD V  ++LI     AG +E A  ++++ + +G+ +  +++++L+     
Sbjct: 278 FAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCK 337

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                 AL     M+  ++KP+V   NALI   C   ++ +  E+L +M++ GL P+ +T
Sbjct: 338 KGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVT 397

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSRRYEKARTLNEHVLS 427
           YS ++ A  +  D      L  Q  E GV+P+ + +  +I  +C    E+ R  + HVL 
Sbjct: 398 YSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLC----EEKRLSDAHVLF 453

Query: 428 FNS---GRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQ 470
            N    G    E  +TSL            AL ++ + + AG +P V   S ++  L 
Sbjct: 454 KNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLS 511



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 170/404 (42%), Gaps = 17/404 (4%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAI 77
           V+  +++YN LIR    +G   E + +L DM   G       Y+   A FF   +   A 
Sbjct: 146 VAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAE 205

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           +           P L TFN +++    +   E A +V   +   GL  D   Y TL+   
Sbjct: 206 RLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGY 265

Query: 138 AKSG---KVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            K+G   +  ++F     + + PD V F +LI    ++G ++ A  ++ +M      +  
Sbjct: 266 CKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRER--GLQM 323

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           + +T  AL+      G +D A    + + +  IK +   Y   IN     G  + A  + 
Sbjct: 324 NEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELL 383

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
            +M  KG+ PD V  S +I          +AFE+ Q+   +G+    I+YSSL+      
Sbjct: 384 HEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEE 443

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
           K    A  L+++M  + L+P   T  +LI   C    + + + +   M   G+ P+ +TY
Sbjct: 444 KRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTY 503

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           S+L+    +         LL +   +  IP    +  ++  C +
Sbjct: 504 SVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRK 547



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 162/378 (42%), Gaps = 26/378 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R G +     L+  M   GL      +++    +CK+ K +++A + F  
Sbjct: 187 TYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGK-MEDARKVFDE 245

Query: 87  VPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +    L+    ++N L+     +  S  A  V   + + G+  D   +T+LI    K+G 
Sbjct: 246 MMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGN 305

Query: 143 VDAMFENVKPDR--------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           ++     V+  R        V F ALI    + G +D A  +LA        + P  +  
Sbjct: 306 LEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA--LLAVRGMRQCRIKPSVVCY 363

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDD 251
            AL+      G++D ARE   ++H+   KG  P+V  Y+  I+   +  D   A  +   
Sbjct: 364 NALINGYCMVGRMDEARE---LLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQ 420

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M +KGV+PD +  S+LI       ++  A  + +     G+     +Y+SL+       N
Sbjct: 421 MLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGN 480

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            ++AL L++ M    + P V T + LI  L    +  +  ++L  +      P    Y  
Sbjct: 481 VERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDA 540

Query: 372 LLVACERKDDVEVGLMLL 389
           L+  C RK +++  L LL
Sbjct: 541 LMHCC-RKAELKSVLALL 557



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 13/226 (5%)

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G    +++Y++++ A S+A +   A   ++ M S  + P V T N LI ALC      + 
Sbjct: 111 GYVPSVLAYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEA 169

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 409
           + +L DM+  G  PN +TY+ L+ A  R  +V+    L+    + G+ PNLV F  ++ G
Sbjct: 170 LSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNG 229

Query: 410 MC-SRRYEKARTLNEHVL---------SFNS-GRPQIENKWTSLALMVYREAIVAGTIPT 458
           MC + + E AR + + ++         S+N+      +   +  AL V+ E    G +P 
Sbjct: 230 MCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 289

Query: 459 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
           V   + ++  +    N +    LV  +      +      +LIDGF
Sbjct: 290 VVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGF 335



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 125/291 (42%), Gaps = 38/291 (13%)

Query: 32  YNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNV----CKSQKAIKEAFRF 83
           YN LI      GR+ E  +LL +ME KGL   D V ++   +     C +  A +   + 
Sbjct: 363 YNALINGYCMVGRMDEARELLHEMEAKGL-KPDVVTYSTIISAYCKNCDTHSAFELNQQM 421

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P   T++ L+ V    K    A  + + + + GL+ D   YT+LI    K G V
Sbjct: 422 LEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNV 481

Query: 144 -------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                  D M +  V PD V ++ LI    +S     A  +L ++  E  P+ P +    
Sbjct: 482 ERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHE-EPI-PANTKYD 539

Query: 196 ALMKACANA---------------GQVDRAREVYKMI--HKYNIKGTPEVYTIAINCCSQ 238
           ALM  C  A               G ++ A +VY+ +    +N+ G+  VY++ I+   +
Sbjct: 540 ALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGS--VYSVLIHGHCR 597

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
            G+   A S +  M ++G  P+     +LI      G V  A +++Q+  N
Sbjct: 598 AGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVIQQLLN 648


>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
          Length = 528

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 157/342 (45%), Gaps = 11/342 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAM 146
           P    F+ L+S  A ++  + A ++L   Q  GL       T LI++   + +V   +A+
Sbjct: 86  PDAPLFSDLISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEAL 145

Query: 147 F------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           F        +KP    +NAL+    + G++  A  VL EM+     V PD  T   L+ A
Sbjct: 146 FLEFFLAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQ--CGVAPDEATYSLLVDA 203

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              AG+ + AR + K +    +K +  V++  +      G+W+ A +V  +M   GV PD
Sbjct: 204 YTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPD 263

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
             F + +ID  G    +  A +     + +GI   ++++++L+ A        +A+EL++
Sbjct: 264 RHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFD 323

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+        +T N +I  L +  +      +L++MK  GL PN ITY+ L+    R  
Sbjct: 324 EMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSG 383

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
             +  +  +   K DG+ P+  M+  ++   ++R      LN
Sbjct: 384 RFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALN 425



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 148/319 (46%), Gaps = 10/319 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P  +T+++L+     +   E A  +L+ ++  G+K    +++ ++      G+    F  
Sbjct: 192 PDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAV 251

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V+PDR  +N +I   G+   +  A D    M  E   ++PD +T   L+ A 
Sbjct: 252 LREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREE--GIEPDVVTWNTLIDAH 309

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+ DRA E++  + + N       Y I IN   +   WE   ++  +M ++G++P+ 
Sbjct: 310 CKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNI 369

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + L+D  G +G+ + A + ++  K  G+      Y +L+ A +       AL + + 
Sbjct: 370 ITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKA 429

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M++  L+ +   +N+LI A  +  ++ +   VL  MK  GL P+ ITY+ L+ A  R + 
Sbjct: 430 MRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQ 489

Query: 382 VEVGLMLLSQAKEDGVIPN 400
            E   ++  +    G  P+
Sbjct: 490 FEKVPVIYEEMITSGCAPD 508



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 121/293 (41%), Gaps = 41/293 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDA 145
           P+   F+ +++      + + AF VLR +  +G++ D   Y  +I T  K       +DA
Sbjct: 227 PSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDA 286

Query: 146 M----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD------------- 188
                 E ++PD V +N LI A  + G  DRA ++  EM     P+              
Sbjct: 287 FDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTTYNIMINLLGE 346

Query: 189 --------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                               P+ IT   L+     +G+   A +  + +    +K +  +
Sbjct: 347 EQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTM 406

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   +N  +Q G  + A +V   M   G+    V L++LI+  G   ++  AF +LQ  K
Sbjct: 407 YHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMK 466

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
             G+   +I+Y++LM A    + ++K   +YE M +    P       L +AL
Sbjct: 467 ENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARAMLRSAL 519


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 172/400 (43%), Gaps = 20/400 (5%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V    ++YN LI     +G++ + + +L+DM  +G       Y+      CK  +  ++A
Sbjct: 163 VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKG-RGYRQA 221

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL--- 133
                L+      P   T+N+LM       D + A ++LR +   G K     Y T+   
Sbjct: 222 MELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKG 281

Query: 134 ITTCAKSGKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
           + +  + G  D +      EN  P+   FN +I +  + G + +A  +L +M+   H   
Sbjct: 282 LCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSK--HGCT 339

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
            + +T  A++        VD A  +   +  Y  K     Y   +        W  A  +
Sbjct: 340 ANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEEL 399

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            D+MT+ G +PD V  + LI F    G +  A E+ ++  ++G +   I+YS+++   + 
Sbjct: 400 MDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAK 459

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           A    +ALEL+  M      P       L   L D D + + ++ +  ++  G+ P+T+ 
Sbjct: 460 ATKLDQALELFNEMGHKGFNPD-KIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVL 518

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           Y+ +L+   R    E  + +++     G +P+ + +  +I
Sbjct: 519 YNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILI 558



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 142/326 (43%), Gaps = 22/326 (6%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQS 167
           R+V    ++ +   Y  LI T  + G+V        D +     PD V +N L+ A  + 
Sbjct: 156 RVVGGMPVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKG 215

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
               +A +++  M AE     P+++T   LM      G VD A E+ + +  +  K +  
Sbjct: 216 RGYRQAMELIDLMRAEG--CTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTV 273

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y   +        W  A  +  +M ++   P+E   + +I      G ++ A ++L++ 
Sbjct: 274 NYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKM 333

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
              G +  I++Y++++      +N   A+ L   MKS   KP + T N L+  LC   Q 
Sbjct: 334 SKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQW 393

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILL-VACERK---DDVEVGLMLLSQAKEDGVIPNLVM 403
               E++ +M   G  P+ +T++ L+   C++    D +EV      Q  + G  PN + 
Sbjct: 394 VDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEV----FKQMPDKGCTPNSIT 449

Query: 404 FKCIIGMCSRRYEKARTLNEHVLSFN 429
           +  II   +    KA  L++ +  FN
Sbjct: 450 YSTIISGLA----KATKLDQALELFN 471


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 167/365 (45%), Gaps = 26/365 (7%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LIR    +G + + + + +DM  +G       Y       CK +   K+A      
Sbjct: 162 TYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCK-ESGYKQAVVLLDE 220

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + +    P + T+N+L++   S  D   A +VL  +   G K D   YT ++ +   S +
Sbjct: 221 MRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSER 280

Query: 143 -------VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
                  +  MF N   PD V FNA+IT+  Q G V RA  VLA+M+   H   PD IT 
Sbjct: 281 WEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSE--HGCTPDIITY 338

Query: 195 GALMKACANAGQVDRAREVYK-----MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
            ++M       +VD A ++ K     M+ K  I       TI  + C Q G ++ A  V 
Sbjct: 339 SSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLC-QKGLFDRAIKVV 397

Query: 250 DDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           D+M++ G IPD    + ++D F   + K E A ++L    + G+     +Y SL    S 
Sbjct: 398 DEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSR 457

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
               ++A+ ++  ++++ L P     NA++  LC   +    ++  + M S G  P+  T
Sbjct: 458 EDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDEST 517

Query: 369 YSILL 373
           Y IL+
Sbjct: 518 YIILV 522



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 156/377 (41%), Gaps = 54/377 (14%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSGKVD 144
           L P+ T+ T+N +++    + + + A    R++       D   Y  LI   C +   +D
Sbjct: 122 LGPSATIITYNTMVNGYCRAGNIDAA---RRMIDSVPFAPDTFTYNPLIRALCVRGCVLD 178

Query: 145 AM--FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
           A+  F+++      P  V ++ L+ A  +     +A  +L EM ++    +PD +T   L
Sbjct: 179 ALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSK--GCEPDIVTYNVL 236

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           + A  + G V  A +V   +  Y  K     YT  +     +  WE A  +   M     
Sbjct: 237 INAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDC 296

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL- 316
            PDEV  +A+I      G V  A ++L +    G +  II+YSS+M      +   +A+ 
Sbjct: 297 APDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIK 356

Query: 317 ---ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK--------------- 358
              EL   M S    P   T N +IT+LC      + ++V+ +M                
Sbjct: 357 LLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIV 416

Query: 359 ---------------------SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
                                S GLCP+T TY  L     R+D++E  + +  + +  G+
Sbjct: 417 DGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGL 476

Query: 398 IPNLVMFKCI-IGMCSR 413
            P+ +++  I +G+C +
Sbjct: 477 SPDKMLYNAILLGLCKK 493



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 155/335 (46%), Gaps = 28/335 (8%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFENVKPDRVV--FNALITA 163
           +GA +++  +  +G          LI      G+V   + + E + P   +  +N ++  
Sbjct: 78  DGALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADAERVVEALGPSATIITYNTMVNG 137

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNI 222
             ++G +D A  ++  +     P  PD  T   L++A    G V  A  V+  M+H+   
Sbjct: 138 YCRAGNIDAARRMIDSV-----PFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHR--- 189

Query: 223 KGTPEVYTIAI---NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
             +P V T +I     C ++G ++ A  + D+M  KG  PD V  + LI+     G V  
Sbjct: 190 GCSPSVVTYSILLDATCKESG-YKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGE 248

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A ++L    + G     ++Y+ ++ +  +++ W++A +L   M S    P   T NA+IT
Sbjct: 249 ALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVIT 308

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL--VACERKDDVEVGLM--LLSQAKED 395
           +LC    + +  +VL+ M   G  P+ ITYS ++  +  ER+ D  + L+  LL++    
Sbjct: 309 SLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSK 368

Query: 396 GVIPNLVMFKCII------GMCSRRYEKARTLNEH 424
             IP+ V F  II      G+  R  +    ++EH
Sbjct: 369 NCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEH 403


>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
          Length = 680

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 121/526 (23%), Positives = 224/526 (42%), Gaps = 100/526 (19%)

Query: 81  FRFFKLVPNPTLS--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           +  F L    TL+  T+N L+  CA + D E A  ++  +++ G ++D   Y+ +I +  
Sbjct: 155 YEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLT 214

Query: 139 KSGKVDA-----MFENVKPDRV-----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
           +S K+D+     +++ ++ D++     + N +I    +SG   +A  +L    A+   + 
Sbjct: 215 RSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLG--MAQATGLS 272

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
               T+ +++ A A++G+   A  +++ + +  IK     Y   +    +TG  + A S+
Sbjct: 273 AKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESM 332

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
             +M K+GV PDE   S LID   +AG+ E+A  +L+E +   +      +S L+    +
Sbjct: 333 VSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRD 392

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
              WQK  ++ + MKSI +KP     N +I      + L   M     M S G+ P+ +T
Sbjct: 393 RGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVT 452

Query: 369 YSILL------------------------VAC--------------ERKDDVEVGLMLLS 390
           ++ L+                        + C              ER DD++    LL 
Sbjct: 453 WNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMK---RLLG 509

Query: 391 QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREA 450
           + K  G++PN+V    ++ +    Y K+   N+                   A+    E 
Sbjct: 510 KMKSQGILPNVVTHTTLVDV----YGKSGRFND-------------------AIECLEEM 546

Query: 451 IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV-SADALKRSNLC--SLIDGFGE- 506
              G  P+  + + ++          + E+ V    V ++D LK S L   SLI+ FGE 
Sbjct: 547 KSVGLKPSSTMYNALINAYA---QRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGED 603

Query: 507 -YDPRAFSLLEEAASFGIVPCV--------------SFKEIPVVVD 537
             D  AF++L+     G+ P V               F+++PVV +
Sbjct: 604 RRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYE 649



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/360 (23%), Positives = 161/360 (44%), Gaps = 13/360 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPT 91
           L   GR  E   L E++ + G+    + Y+A      K+   + A        K   +P 
Sbjct: 285 LADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPD 344

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
             T+++L+    ++   E A  VL+ ++   ++ +  +++ L+      G+    F+   
Sbjct: 345 EHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLK 404

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 VKPDR  +N +I   G+   +D A      M +E   ++PD +T   L+     
Sbjct: 405 EMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSE--GIEPDRVTWNTLIDCHCK 462

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G+   A E+++ + +         Y I IN       W+    +   M  +G++P+ V 
Sbjct: 463 HGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVT 522

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + L+D  G +G+   A E L+E K+ G+      Y++L+ A +     ++A+  +  M 
Sbjct: 523 HTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMT 582

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           S  LKP++  +N+LI A  +  +  +   VL  MK  G+ P+ +TY+ L+ A  R D  +
Sbjct: 583 SDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQ 642



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 115/512 (22%), Positives = 207/512 (40%), Gaps = 82/512 (16%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA------ 80
           +YN LI    R   I + ++L+  M + G       Y + F N     +++  +      
Sbjct: 170 TYNALIGACARNNDIEKALNLIAKMRQDG-------YQSDFVNYSLVIQSLTRSNKIDSV 222

Query: 81  --FRFFKLVPNPTL----STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
              R +K +    L       N ++   A S D   A Q+L + Q  GL A      ++I
Sbjct: 223 MLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSII 282

Query: 135 TTCAKSGKV---DAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
           +  A SG+    +A+FE      +KP    +NAL+    ++G +  A  +++EM  E   
Sbjct: 283 SALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEM--EKRG 340

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE--- 243
           V PD  T   L+ A  NAG+ + AR V K +   +++    V++  +      G+W+   
Sbjct: 341 VSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTF 400

Query: 244 ---------------------------FAC-----SVYDDMTKKGVIPDEVFLSALIDFA 271
                                      F C     + +D M  +G+ PD V  + LID  
Sbjct: 401 QVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 460

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G+   A E+ +  + +G      +Y+ ++ +  + + W     L   MKS  + P V
Sbjct: 461 CKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNV 520

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T   L+       +    +E L +MKS+GL P++  Y+ L+ A  ++   E  +     
Sbjct: 521 VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRV 580

Query: 392 AKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM---- 445
              DG+ P+L+    +I      RR  +A  + ++ +  N  +P +    T +  +    
Sbjct: 581 MTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQY-MKENGVKPDVVTYTTLMKALIRVD 639

Query: 446 -------VYREAIVAGTIPTVEVVSKVLGCLQ 470
                  VY E I++G  P  +  S +   L+
Sbjct: 640 KFQKVPVVYEEMIMSGCKPDRKARSMLRSALR 671



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 119/270 (44%), Gaps = 9/270 (3%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           ++++ LI A G+S  +  AF  L      + P     +T  AL+ ACA    +++A  + 
Sbjct: 139 LLYSILIHALGRSEKLYEAF--LLSQKQTLTP-----LTYNALIGACARNNDIEKALNLI 191

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
             + +   +     Y++ I   +++   D      +Y ++ +  +  D   ++ +I    
Sbjct: 192 AKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFA 251

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            +G    A ++L  A+  G+S    +  S++ A +++    +A  L+E ++   +KP   
Sbjct: 252 KSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTR 311

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
             NAL+        L     ++S+M+  G+ P+  TYS+L+ A       E   ++L + 
Sbjct: 312 AYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEM 371

Query: 393 KEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
           +   V PN  +F  ++     R E  +T  
Sbjct: 372 EAGDVQPNSFVFSRLLAGFRDRGEWQKTFQ 401


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 141/299 (47%), Gaps = 38/299 (12%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           NVK D   F  +I  C + G +D+ F+VL +M  E   + P+ +    L+  C   G ++
Sbjct: 159 NVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQM--EEMGLSPNVVVYTTLIDGCCKNGDIE 216

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
           R ++++  + + ++      YT+ IN   + G  +    +Y+ M   G++P+    +++I
Sbjct: 217 RGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMI 276

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK------------------ 310
               + GK+  AFE+  E + +G++  +++Y++L+G     +                  
Sbjct: 277 CRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLS 336

Query: 311 -----------------NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
                            N  KA  L+  MKS    P+++T N LI    +        ++
Sbjct: 337 PNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDM 396

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + +M++ GL P+ +TY+IL+ A  R D++E    + S  ++ G++ ++ ++  +I G+C
Sbjct: 397 VREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLC 455



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 116/257 (45%), Gaps = 3/257 (1%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P    FN L+    +S   ++A+ V  E    V     D  + G ++K C   G +D+  
Sbjct: 128 PGSNTFNNLLILLIKSNFFEKAWRVFNETKGNV---KLDVYSFGIMIKGCCEVGYLDKGF 184

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           EV   + +  +     VYT  I+ C + GD E    ++  M +  V+ ++   + LI+  
Sbjct: 185 EVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGF 244

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G  +   E+ ++ K  GI   + +Y+S++  C N      A EL++ M+   +   V
Sbjct: 245 FKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNV 304

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T N LI  LC   ++ +   ++  MK  GL PN I+Y+ L+       +++    L +Q
Sbjct: 305 VTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQ 364

Query: 392 AKEDGVIPNLVMFKCII 408
            K  G  P+L  +  +I
Sbjct: 365 MKSSGQSPSLATYNILI 381



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 141/328 (42%), Gaps = 10/328 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDA-- 145
           +P +  +  L+  C  + D E   Q+   + E  + A+   YT LI    K G K D   
Sbjct: 196 SPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIE 255

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           ++E +K     P+   +N++I  C   G ++ AF++  EM      V  + +T   L+  
Sbjct: 256 LYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRER--GVACNVVTYNTLIGG 313

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                +V  A  +   + +  +      Y   I+     G+ + A S+++ M   G  P 
Sbjct: 314 LCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPS 373

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LI     A       ++++E + +G+S   ++Y+ LM A   + N +KA ++Y 
Sbjct: 374 LATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYS 433

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+   L   +     LI  LC    + +  ++   +  + L PN + Y+ ++    ++ 
Sbjct: 434 SMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEG 493

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                L LL +  E+G++PN+  +   I
Sbjct: 494 SSYRALRLLKEMGENGMVPNVASYNSTI 521



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 144/337 (42%), Gaps = 21/337 (6%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           DV    ++Y  LI    + G   + I+L E M+  G++     Y++     C   K +  
Sbjct: 229 DVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGK-LNN 287

Query: 80  AFRFFKLVPNPTLS----TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           AF  F  +    ++    T+N L+  +C   +  E    + R+ ++ GL  +   Y TLI
Sbjct: 288 AFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRD-GLSPNLISYNTLI 346

Query: 135 TTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
                 G +D   ++F  +K     P    +N LI    ++       D++ EM  E   
Sbjct: 347 DGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREM--EARG 404

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + P  +T   LM A   +  +++A ++Y  + K  +     +Y + I+     GD + A 
Sbjct: 405 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS 464

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            ++  + +  + P++V  + +I      G    A  +L+E    G+   + SY+S +   
Sbjct: 465 KLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIQIL 524

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
              + W +A  L + M  + LKP++S  N +  A  D
Sbjct: 525 CKDEKWTEAEVLLKDMIELGLKPSISIWNMISKARFD 561



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 146/329 (44%), Gaps = 22/329 (6%)

Query: 67  FFNVCKSQKAIK--EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           FF +   +  I+  E  +   +VPN  + T+N ++  C +      AF++   ++E G+ 
Sbjct: 244 FFKMGLKKDGIELYEKMKLTGIVPN--VYTYNSMICRCCNDGKLNNAFELFDEMRERGVA 301

Query: 125 ADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDV 176
            +   Y TLI    +  +V            + + P+ + +N LI      G +D+A  +
Sbjct: 302 CNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSL 361

Query: 177 LAEM--NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
             +M  + +   +   +I I    +A  +AG  D  RE    +    +  +   YTI ++
Sbjct: 362 FNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVRE----MEARGLSPSKVTYTILMD 417

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
              ++ + E A  +Y  M K G++ D      LI      G ++ A ++ +      +  
Sbjct: 418 ALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKP 477

Query: 295 GIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
             + Y++++ G C    ++ +AL L + M    + P V++ N+ I  LC  ++  +   +
Sbjct: 478 NDVIYNTMIYGYCKEGSSY-RALRLLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVL 536

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDV 382
           L DM  LGL P+   ++  +++  R D+V
Sbjct: 537 LKDMIELGLKPSISIWN--MISKARFDNV 563


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 141/299 (47%), Gaps = 38/299 (12%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           NVK D   F  +I  C + G +D+ F+VL +M  E   + P+ +    L+  C   G ++
Sbjct: 146 NVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQM--EEMGLSPNVVVYTTLIDGCCKNGDIE 203

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
           R ++++  + + ++      YT+ IN   + G  +    +Y+ M   G++P+    +++I
Sbjct: 204 RGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMI 263

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK------------------ 310
               + GK+  AFE+  E + +G++  +++Y++L+G     +                  
Sbjct: 264 CRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLS 323

Query: 311 -----------------NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
                            N  KA  L+  MKS    P+++T N LI    +        ++
Sbjct: 324 PNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDM 383

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + +M++ GL P+ +TY+IL+ A  R D++E    + S  ++ G++ ++ ++  +I G+C
Sbjct: 384 VREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLC 442



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 116/257 (45%), Gaps = 3/257 (1%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P    FN L+    +S   ++A+ V  E    V     D  + G ++K C   G +D+  
Sbjct: 115 PGSNTFNNLLILLIKSNFFEKAWRVFNETKGNV---KLDVYSFGIMIKGCCEVGYLDKGF 171

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           EV   + +  +     VYT  I+ C + GD E    ++  M +  V+ ++   + LI+  
Sbjct: 172 EVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGF 231

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G  +   E+ ++ K  GI   + +Y+S++  C N      A EL++ M+   +   V
Sbjct: 232 FKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNV 291

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T N LI  LC   ++ +   ++  MK  GL PN I+Y+ L+       +++    L +Q
Sbjct: 292 VTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQ 351

Query: 392 AKEDGVIPNLVMFKCII 408
            K  G  P+L  +  +I
Sbjct: 352 MKSSGQSPSLATYNILI 368



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 141/328 (42%), Gaps = 10/328 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDA-- 145
           +P +  +  L+  C  + D E   Q+   + E  + A+   YT LI    K G K D   
Sbjct: 183 SPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIE 242

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           ++E +K     P+   +N++I  C   G ++ AF++  EM      V  + +T   L+  
Sbjct: 243 LYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRER--GVACNVVTYNTLIGG 300

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                +V  A  +   + +  +      Y   I+     G+ + A S+++ M   G  P 
Sbjct: 301 LCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPS 360

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LI     A       ++++E + +G+S   ++Y+ LM A   + N +KA ++Y 
Sbjct: 361 LATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYS 420

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+   L   +     LI  LC    + +  ++   +  + L PN + Y+ ++    ++ 
Sbjct: 421 SMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEG 480

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                L LL +  E+G++PN+  +   I
Sbjct: 481 SSYRALRLLKEMGENGMVPNVASYNSTI 508



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/402 (20%), Positives = 169/402 (42%), Gaps = 23/402 (5%)

Query: 24  DVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           +V   ++S+  +I+     G + +  ++L  ME  GL     VY       CK+    + 
Sbjct: 146 NVKLDVYSFGIMIKGCCEVGYLDKGFEVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERG 205

Query: 80  AFRFFKLVPNPTLS---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F+K+     ++   T+ +L++        +   ++   ++  G+  +   Y ++I  
Sbjct: 206 KQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICR 265

Query: 137 CAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
           C   GK++  FE         V  + V +N LI    Q   V  A  ++  M  +   + 
Sbjct: 266 CCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRD--GLS 323

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ I+   L+    + G +D+A  ++  +       +   Y I I   S+  +      +
Sbjct: 324 PNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDM 383

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
             +M  +G+ P +V  + L+D    +  +E AF+I    +  G+   I  Y  L+     
Sbjct: 384 VREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCV 443

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
             + ++A +L++ +  + LKP     N +I   C      + + +L +M   G+ PN  +
Sbjct: 444 VGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVAS 503

Query: 369 Y-SILLVAC--ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
           Y S + + C  E+  + EV   LL    E G+ P++ ++  I
Sbjct: 504 YNSTIXILCKDEKWTEAEV---LLKDMIELGLKPSISIWNMI 542



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 144/337 (42%), Gaps = 21/337 (6%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           DV    ++Y  LI    + G   + I+L E M+  G++     Y++     C   K +  
Sbjct: 216 DVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICRCCNDGK-LNN 274

Query: 80  AFRFFKLVPNPTLS----TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           AF  F  +    ++    T+N L+  +C   +  E    + R+ ++ GL  +   Y TLI
Sbjct: 275 AFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRD-GLSPNLISYNTLI 333

Query: 135 TTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
                 G +D   ++F  +K     P    +N LI    ++       D++ EM  E   
Sbjct: 334 DGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAKNSAGVTDMVREM--EARG 391

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + P  +T   LM A   +  +++A ++Y  + K  +     +Y + I+     GD + A 
Sbjct: 392 LSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEAS 451

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            ++  + +  + P++V  + +I      G    A  +L+E    G+   + SY+S +   
Sbjct: 452 KLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPNVASYNSTIXIL 511

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
              + W +A  L + M  + LKP++S  N +  A  D
Sbjct: 512 CKDEKWTEAEVLLKDMIELGLKPSISIWNMISKARFD 548


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/441 (21%), Positives = 189/441 (42%), Gaps = 30/441 (6%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--NVKP 152
           ++ +++    S  ++ A   L  +   G       +  L+    +S   D  +   NV  
Sbjct: 92  YDAIVNAYVHSHSTDQALTFLHHMIHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFNVLK 151

Query: 153 DRVVFNA-----LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
            +VV NA     +IT C ++G   R F +LA +  E   + P+ +    L+  C   G V
Sbjct: 152 SKVVLNAYSFGIMITGCCEAGYFVRVFRLLAVL--EEFGLSPNVVIYTTLIDGCCKNGDV 209

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             A+ ++  + +  +      Y++ +N   + G       +Y++M + G++P+    + L
Sbjct: 210 MLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCL 269

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I    + G V+ AF++  E + +GI+ G+++Y+ L+G     K + +A++L   +  + L
Sbjct: 270 ISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGL 329

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P + T N LI   CD  ++   + + + +KS GL P  +TY+ L+    + +++   L 
Sbjct: 330 SPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALD 389

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVY 447
           L+ + +E  +  + V +  +I   +R     +    H L   SG   + + +T   L+  
Sbjct: 390 LVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGL--VPDVYTYSVLI-- 445

Query: 448 REAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEY 507
               V G +       K LG + L  N+ I   ++        +                
Sbjct: 446 HGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSY--------------- 490

Query: 508 DPRAFSLLEEAASFGIVPCVS 528
             RA  LL E    G+VP V+
Sbjct: 491 --RALRLLNEMVHSGMVPNVA 509



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 103/432 (23%), Positives = 187/432 (43%), Gaps = 78/432 (18%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           FNV KS K +  A+            +F ++++ C  +      F++L +++E GL  + 
Sbjct: 147 FNVLKS-KVVLNAY------------SFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNV 193

Query: 128 KLYTTLITTCAKSG----------KVD----------------------------AMFEN 149
            +YTTLI  C K+G          K+D                             M+EN
Sbjct: 194 VIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYEN 253

Query: 150 VK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAE--VHPVDPDHITIGALMKACA 202
           +      P+   +N LI+     G VD+AF V AEM  +     V   +I IG L +   
Sbjct: 254 MNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRG-- 311

Query: 203 NAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                 +  E  K++HK N  G +P +  Y I IN     G  + A  +++ +   G+ P
Sbjct: 312 -----KKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSP 366

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
             V  + LI        +  A ++++E + + I+   ++Y+ L+ A +      KA E++
Sbjct: 367 TLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMH 426

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M+   L P V T + LI   C    + +  +    +  + L PN++ Y+ ++    ++
Sbjct: 427 SLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKE 486

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG-RPQIE 436
                 L LL++    G++PN+  F   +G+  R  ++++A  L   ++  NSG +P + 
Sbjct: 487 GSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMI--NSGLKPSV- 543

Query: 437 NKWTSLALMVYR 448
               SL  MV++
Sbjct: 544 ----SLYKMVHK 551



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 138/321 (42%), Gaps = 23/321 (7%)

Query: 30  HSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H+Y    N   +QG   E   + E+M R G++     Y+      C +   + +AF+ F 
Sbjct: 229 HTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYC-NDGMVDKAFKVFA 287

Query: 86  LVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +    ++    T+N+L+      K    A +++  V + GL  +   Y  LI      G
Sbjct: 288 EMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVG 347

Query: 142 KVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K+D    +F  +K     P  V +N LI    +   +  A D++ EM  E   +    +T
Sbjct: 348 KMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEM--EERCIARSKVT 405

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDD 251
              L+ A A     D+A E++ ++ K  +   P+VYT  + I+     G+ + A   +  
Sbjct: 406 YTILIDAFARLNYTDKACEMHSLMEKSGL--VPDVYTYSVLIHGXCVNGNMKEASKPFKS 463

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           + +  + P+ V  + +I      G    A  +L E  + G+   + S+ S MG     + 
Sbjct: 464 LGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEK 523

Query: 312 WQKALELYEHMKSIKLKPTVS 332
           W++A  L   M +  LKP+VS
Sbjct: 524 WKEAELLLGQMINSGLKPSVS 544


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 177/408 (43%), Gaps = 49/408 (12%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  +++YN +IR    QG + + +  +  ME++G+                        
Sbjct: 203 VSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGI------------------------ 238

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                   +P + T+N L+      K  + A  +LR +   G+ A+   Y ++I      
Sbjct: 239 --------SPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGK 290

Query: 141 GKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G++  + E V+        PD V +N L+    + G + +   +L+EM  +   + P+ +
Sbjct: 291 GRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGK--GLSPNVV 348

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+     AG + RA E++  +    ++     YT  I+   Q G    A  V  +M
Sbjct: 349 TYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEM 408

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
              G  P  V  +AL+      G+V+ A  IL+    +G+   ++SYS+++      +  
Sbjct: 409 IVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCREREL 468

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            KA ++ E M    + P   T ++LI  LC   +L +  ++  +M   GL P+ +TY+ L
Sbjct: 469 GKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSL 528

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 420
           + A     ++   L L  +  + G +P+ V +  +I   ++   KART
Sbjct: 529 INAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNK---KART 573



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 176/407 (43%), Gaps = 20/407 (4%)

Query: 35  LIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPN 89
           L R G + + + LL    R G    +L  + V  A       + +   +A R F+ +V N
Sbjct: 142 LSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRN 201

Query: 90  ---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DA 145
              P + T+N+++    S  D E     +R +++ G+  +   Y TLI    K  KV +A
Sbjct: 202 GVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEA 261

Query: 146 M-------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
           M          V  + + +N++I      G +    +++ EM  +   + PD +T   L+
Sbjct: 262 MALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGK--GLVPDEVTYNTLV 319

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                 G + +   +   +    +      YT  INC  + G+   A  ++D M  +G+ 
Sbjct: 320 NGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLR 379

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+E   + LID     G +  A+++L E    G S  +++Y++L+         Q+A+ +
Sbjct: 380 PNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGI 439

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CE 377
              M    L P V + + +I   C   +L K  ++  +M   G+ P+T+TYS L+   C 
Sbjct: 440 LRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCL 499

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 424
           ++  VE    L  +    G+ P+ V +  +I       E ++ L  H
Sbjct: 500 QQKLVE-AFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLH 545



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 164/393 (41%), Gaps = 29/393 (7%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM-----KACANAGQVDRA 210
           VF+ ++ +  + G V +A  +L   N   H   P  ++  A++     ++ +N    D A
Sbjct: 134 VFDLVVKSLSRLGFVPKALTLLHLANR--HGFAPTVLSYNAVLDALLRRSSSNHRDYDDA 191

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
             V++ + +  +      Y + I      GD E        M K+G+ P+ V  + LID 
Sbjct: 192 ERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDA 251

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
           +    KV+ A  +L+     G++  +ISY+S++          +  EL E M+   L P 
Sbjct: 252 SCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPD 311

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
             T N L+   C    L + + +LS+M   GL PN +TY+ L+    +  ++   + +  
Sbjct: 312 EVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFD 371

Query: 391 QAKEDGVIPNLVMFKCII-GMCSRRY--EKARTLNEHVLSFNSGRPQIENKW-------- 439
           Q +  G+ PN   +  +I G C +    E  + L+E ++S  S      N          
Sbjct: 372 QMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLG 431

Query: 440 -TSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKR 494
               A+ + R  +  G  P V   S V+       +L     ++E +VE  GV  D +  
Sbjct: 432 RVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEK-GVLPDTVTY 490

Query: 495 SNLCSLIDG--FGEYDPRAFSLLEEAASFGIVP 525
           S   SLI G    +    AF L  E    G+ P
Sbjct: 491 S---SLIQGLCLQQKLVEAFDLFREMMRRGLPP 520



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 120/288 (41%), Gaps = 38/288 (13%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN L+      GR+ E + +L  M  +GL      Y       C+ ++ + +AF+  + 
Sbjct: 419 TYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCR-ERELGKAFQMKEE 477

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                ++P+ T++  +++  +C   K  E AF + R +   GL  D   YT+LI      
Sbjct: 478 MVEKGVLPD-TVTYSSLIQGLCLQQKLVE-AFDLFREMMRRGLPPDEVTYTSLINAYCVD 535

Query: 141 GKV-------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G++       D M +    PD V ++ LI    +      A  +L ++  E     PD +
Sbjct: 536 GELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLFYE--ESVPDDV 593

Query: 193 TIGALMKACAN---------------AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
           T   L++ C+N                G ++ A  V+K + + N K    +Y + I+  S
Sbjct: 594 TYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHS 653

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
           + G+   A ++Y ++         V + AL+      G  +    +LQ
Sbjct: 654 RGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQ 701


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 146/327 (44%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P +  FN+LM     + D   A  V   + + GL+     + TLI+ C KSG V+  F  
Sbjct: 246 PKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRL 305

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E V PD   F+ALI    + G +D    +  EM      + P+ +T   L+   
Sbjct: 306 KGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGR--GLVPNGVTFTTLIDGQ 363

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+VD A + ++M+    ++     Y   IN   + GD + A  + ++MT  G+ PD+
Sbjct: 364 CKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDK 423

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + LID     G +E+A EI +    +GI +  +++++L+           A  +   
Sbjct: 424 ITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTD 483

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S   KP   T   +I   C    +    ++L +M+S G  P  +TY+ L+    ++  
Sbjct: 484 MLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQ 543

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ++   MLL      GV PN + +  ++
Sbjct: 544 MKNAKMLLDAMLNVGVAPNDITYNILL 570



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 161/350 (46%), Gaps = 17/350 (4%)

Query: 79  EAFRFFKLV-----PNPTLSTFNMLMSVCA-SSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           +A + F+LV     P P     N+L  V      + E ++ +   V ++G       +  
Sbjct: 194 DAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWALYLEVLDSGYPPKIYFFNV 253

Query: 133 LITTCAKSGKVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           L+    K+G V     +F+ +     +P  V FN LI+ C +SG V+  F +   M +E 
Sbjct: 254 LMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFRLKGVMESE- 312

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             V PD  T  AL+      G++D    ++  +    +      +T  I+   + G  + 
Sbjct: 313 -GVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDL 371

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A   +  M  +GV PD V  +ALI+     G ++ A  ++ E    G+    I++++L+ 
Sbjct: 372 ALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLID 431

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
            C    + + ALE+   M    ++       ALI+ LC   ++     +L+DM S G  P
Sbjct: 432 GCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKP 491

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           +  TY++++    +K DV++G  LL + + DG +P +V +  ++ G+C +
Sbjct: 492 DDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQ 541



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 127/258 (49%), Gaps = 7/258 (2%)

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           ++R++ +  E+    +P  P       LM     AG V  AR V+  I K  ++ T   +
Sbjct: 229 IERSWALYLEVLDSGYP--PKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSF 286

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
              I+ C ++GD E    +   M  +GV PD    SALI+     G+++    +  E   
Sbjct: 287 NTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCG 346

Query: 290 QGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
           +G+    +++++L+ G C   K    AL+ ++ M +  ++P + T NALI  LC    L 
Sbjct: 347 RGLVPNGVTFTTLIDGQCKGGK-VDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLK 405

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +   ++++M + GL P+ IT++ L+  C +  D+E  L +  +  E+G+  + V F  +I
Sbjct: 406 EARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALI 465

Query: 409 -GMC--SRRYEKARTLNE 423
            G+C   R ++  R L +
Sbjct: 466 SGLCREGRVHDAGRMLTD 483



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 120/284 (42%), Gaps = 52/284 (18%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----P 88
           N L ++GR+ E   L ++M  +GL+     +       CK  K +  A + F+++     
Sbjct: 326 NGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGK-VDLALKNFQMMLAQGV 384

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            P L T+N L++      D + A +++  +  +GLK D   +TTLI  C K G +++   
Sbjct: 385 RPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALE 444

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMK 199
                  E ++ D V F ALI+   + G V  A  +L +M +A   P DP          
Sbjct: 445 IKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDP---------- 494

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                                        YT+ I+C  + GD +    +  +M   G +P
Sbjct: 495 ----------------------------TYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVP 526

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
             V  +AL++     G+++ A  +L    N G++   I+Y+ L+
Sbjct: 527 GVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILL 570


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 161/354 (45%), Gaps = 22/354 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVP 88
           L +  ++ E  D L +M  +GL      Y A     CKS + ++ A R+FK      + P
Sbjct: 526 LCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGE-MQVADRYFKEMLGCGIAP 584

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           N  + T  ++   C     +E A  + R +    +  D + Y+ LI    ++GK+    E
Sbjct: 585 NDVVCT-ALIDGYCKEGSTTE-ATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAME 642

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    + PD   +N++I+   + G + +AF +   M  +   + P+ IT  AL+  
Sbjct: 643 LLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQK--GISPNIITYNALING 700

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              AG+++RARE++  I    +      Y   I+   ++G+   A  ++D+MT KGV PD
Sbjct: 701 LCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPD 760

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 319
               SALID     G  E A  +  E+  +G +    S ++LM G C + K  + A +L 
Sbjct: 761 SFVYSALIDGCRKEGNTEKALSLFLESVQKGFA-STSSLNALMDGFCKSGKVIE-ANQLL 818

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           E M    +KP   T   LI   C    L +  +   DM+   L PN +TY+ LL
Sbjct: 819 EDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALL 872



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 184/427 (43%), Gaps = 21/427 (4%)

Query: 22  AHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA- 76
           A  V   L +YN L++     G + +   LL +M   G+    + Y+       K Q   
Sbjct: 369 ARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTS 428

Query: 77  -IKEAFRFFK---LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            +K+     K   LVP  T  T  M+++        E A +V  ++   G+K +  +YTT
Sbjct: 429 RVKDLLSEMKKSNLVP--TAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTT 486

Query: 133 LITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           LI    + G+             + V+PD + +N++I    +S  ++ A D L EM    
Sbjct: 487 LIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIE-- 544

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             + P+  T GAL+     +G++  A   +K +    I     V T  I+   + G    
Sbjct: 545 RGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTE 604

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A S++  M  + V PD    SALI      GK++ A E+L E   +G+   + +Y+S++ 
Sbjct: 605 ATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIIS 664

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                    KA +L+E+M    + P + T NALI  LC   ++ +  E+   +   GL  
Sbjct: 665 GFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAH 724

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 424
           N +TY+ ++    +  ++     L  +    GV P+  ++  +I  C +     + L+  
Sbjct: 725 NAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLF 784

Query: 425 VLSFNSG 431
           + S   G
Sbjct: 785 LESVQKG 791



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 189/467 (40%), Gaps = 53/467 (11%)

Query: 9   LQFPYPNGK-HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARF 67
           L + + NG   AN  HDV    H  N   R G   E   LL +ME KG       Y+   
Sbjct: 219 LFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVI 278

Query: 68  FNVCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMS------VCASSK----------- 106
             +C++ + + EAF   KL+    L     T+++L+        C  +K           
Sbjct: 279 GGLCRAGE-VDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGL 337

Query: 107 ------------------DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDA 145
                             DS  AF+V   +   G+K +   Y  L+    K G   K DA
Sbjct: 338 KPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADA 397

Query: 146 MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +        +KPD   +N +I    +     R  D+L+EM      + P   T G ++  
Sbjct: 398 LLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKS--NLVPTAYTCGMIING 455

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G ++ A  V++++    +K    +YT  I    Q G ++ A  +   M KKGV PD
Sbjct: 456 LCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPD 515

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  +++I     + K+E A + L E   +G+   + +Y +L+     +   Q A   ++
Sbjct: 516 VLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFK 575

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    + P      ALI   C      +   +   M    + P+  TYS L+    R  
Sbjct: 576 EMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNG 635

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
            ++  + LLS+  E G++P++  +  II G C +    KA  L+E++
Sbjct: 636 KLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYM 682



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 172/398 (43%), Gaps = 19/398 (4%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
            +YN +I    ++   S   DLL +M++  L+            +C+   +I++A R F+
Sbjct: 412 QTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCR-HGSIEDASRVFE 470

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQ----VLRLVQEAGLKADCKLYTTLITTCAKSG 141
           ++ +  +    ++ +        EG FQ    +L+++ + G++ D   Y ++I    KS 
Sbjct: 471 IMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSR 530

Query: 142 K--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K        V+ +   +KP+   + ALI    +SG +  A     EM      + P+ + 
Sbjct: 531 KMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLG--CGIAPNDVV 588

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+      G    A  +++ +   ++      Y+  I+   + G  + A  +  +  
Sbjct: 589 CTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFL 648

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +KG++PD    +++I      G +  AF++ +    +GIS  II+Y++L+     A   +
Sbjct: 649 EKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIE 708

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A EL++ +    L     T   +I   C    L K   +  +M   G+ P++  YS L+
Sbjct: 709 RARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALI 768

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
             C ++ + E  L L  ++ + G      +   + G C
Sbjct: 769 DGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFC 806



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 174/388 (44%), Gaps = 31/388 (7%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
            L+R G++   ++LL +   KGL+     Y++     CK Q  I +AF+  + +     +P
Sbjct: 631  LLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCK-QGGIGKAFQLHEYMCQKGISP 689

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
             + T+N L++    + + E A ++   +   GL  +   Y T+I    KSG +   F   
Sbjct: 690  NIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLF 749

Query: 148  -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                 + V PD  V++ALI  C + G  ++A  +  E    V        ++ ALM    
Sbjct: 750  DEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLE---SVQKGFASTSSLNALMDGFC 806

Query: 203  NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             +G+V  A ++ + +   ++K     YTI I+   +TG  + A   + DM K+ ++P+ +
Sbjct: 807  KSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNAL 866

Query: 263  FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
              +AL+     AG+    F +  E   + I    +++S ++ A     +  K L+L + M
Sbjct: 867  TYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDM 926

Query: 323  KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
                   + +  + LI  LC  + + + ++VL  ++  GL  +  T S  LV C  K   
Sbjct: 927  LKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQGLNLSLATCST-LVRCFHK--- 982

Query: 383  EVGLMLLSQAKEDG---VIPNLVMFKCI 407
                      K DG   V+ ++V FK +
Sbjct: 983  --------AGKMDGAARVLKSMVRFKWV 1002



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 99/447 (22%), Positives = 189/447 (42%), Gaps = 62/447 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L R G I +   + E M   G+   + V +         +   +EA R  K++     
Sbjct: 454 NGLCRHGSIEDASRVFEIMVSLGV-KPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGV 512

Query: 89  NPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---D 144
            P +  +N +++ +C S K  E    ++ ++ E GLK +   Y  LI    KSG++   D
Sbjct: 513 QPDVLCYNSVIIGLCKSRKMEEAKDYLVEMI-ERGLKPNVYTYGALIHGYCKSGEMQVAD 571

Query: 145 AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             F+      + P+ VV  ALI    + G+   A  +   M      V PD  T  AL+ 
Sbjct: 572 RYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLG--RSVHPDVRTYSALIH 629

Query: 200 ACANAGQVDRAREVYKMIHKYNIKG-TPEVYT---IAINCCSQTGDWEFACSVYDDMTKK 255
                G++  A E   ++ ++  KG  P+V+T   I    C Q G  + A  +++ M +K
Sbjct: 630 GLLRNGKLQGAME---LLSEFLEKGLVPDVFTYNSIISGFCKQGGIGK-AFQLHEYMCQK 685

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G+ P+ +  +ALI+    AG++E A E+      +G++   ++Y++++     + N  KA
Sbjct: 686 GISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKA 745

Query: 316 LELYEHMKSIKLKP----------------------------------TVSTMNALITAL 341
             L++ M    + P                                  + S++NAL+   
Sbjct: 746 FRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGF 805

Query: 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
           C   ++ +  ++L DM    + P+ +TY+IL+    +   ++         ++  ++PN 
Sbjct: 806 CKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNA 865

Query: 402 VMFKCII---GMCSRRYEKARTLNEHV 425
           + +  ++    M  RR E     +E +
Sbjct: 866 LTYTALLSGYNMAGRRSEMFALFDEMI 892



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 7/259 (2%)

Query: 153 DR-VVFNALITACGQSGAVDRA--FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           DR VVF  LI    + G  D A  F + A+ N  V  +    +    L+     A +++ 
Sbjct: 164 DRGVVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGL----LCCNGLLSDLLKANKLEL 219

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
               Y  + + N+      YT  IN   + G+ +    +  +M +KG  P  V  + +I 
Sbjct: 220 FWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIG 279

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
               AG+V+ AFE+ +    +G+   + +YS L+      K   +A  + E M S  LKP
Sbjct: 280 GLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKP 339

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
                 ALI          +   V  +M + G+  N  TY+ L+    +  D+E    LL
Sbjct: 340 GHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALL 399

Query: 390 SQAKEDGVIPNLVMFKCII 408
           ++    G+ P+   +  +I
Sbjct: 400 NEMIMVGIKPDTQTYNNMI 418


>gi|168038876|ref|XP_001771925.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676707|gb|EDQ63186.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 831

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 188/424 (44%), Gaps = 38/424 (8%)

Query: 25  VSEQLHS----YNRLI----RQGRISECIDLLEDMERKGL--------LDMDKVYHARFF 68
           +SE  H     YN +I    + G +     ++  ME +GL        + MD   H R  
Sbjct: 289 LSENWHHNDVIYNNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAV 348

Query: 69  NVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           + C +       FR  K       +PT+ ++  L+++ +     + A Q+   +++ G+K
Sbjct: 349 DKCLN------VFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIK 402

Query: 125 ADCKLYTTLITTCAKSGKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDV 176
            + K Y+ +I    + G      ++FE+     +KPD + +N L+ A  ++G ++RA ++
Sbjct: 403 HNRKTYSMIIDGYVQLGDTANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALEL 462

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
           LA M +   P  P   T   ++      G +  A E  + +     + +   Y + ++  
Sbjct: 463 LARMESGDCP--PTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGL 520

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           +Q G  + A S+ D+M   GV P+E   + LI+     G +  AF+     K  G+   +
Sbjct: 521 AQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDV 580

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           I+Y+SL+ AC  A   Q  L +   M +  +       N L+        + +  +++  
Sbjct: 581 IAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQK 640

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY 415
           M+  GL P+  +Y+  + AC +  D+      + Q K+ GV PNL  +  +I G  S  Y
Sbjct: 641 MRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASY 700

Query: 416 -EKA 418
            EKA
Sbjct: 701 PEKA 704



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 166/390 (42%), Gaps = 25/390 (6%)

Query: 91  TLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           TL  +NMLM     C +       F+ L+   E GL      Y  LI   +K GK+D   
Sbjct: 331 TLGLYNMLMDGYVHCRAVDKCLNVFRRLKARTETGLSPTVVSYGCLINLYSKLGKMDKAL 390

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +         +K +R  ++ +I    Q G    AF V  +M+     + PD IT   LM 
Sbjct: 391 QISNEMEDQGIKHNRKTYSMIIDGYVQLGDTANAFSVFEDMSNA--GIKPDGITYNILMN 448

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A    GQ++RA E+   +   +   T   YTI I+   + GD   A     DM   G  P
Sbjct: 449 AFCKNGQMNRALELLARMESGDCPPTLRTYTIIIDGFMKIGDLRMAFETVRDMKMAGFRP 508

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
                + ++     AG+++ A  I+ E    G+     SY++L+   +   +   A + +
Sbjct: 509 SAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPNERSYTTLIEGYACIGDMGLAFKYF 568

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             +K + LKP V    +L+ A C   ++  T+ + ++M + G+  N   Y+ILL    ++
Sbjct: 569 NRIKEVGLKPDVIAYASLLKACCKAGRMQSTLAITAEMAAAGVPMNNYIYNILLDGWAQR 628

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR-TLNEHVLSFNSGRPQIE-- 436
            D+     ++ + + +G+ P++  +   I  C +  +  + T     +     +P ++  
Sbjct: 629 GDMWEASDIMQKMRHEGLTPDIHSYTSFINACCKAGDMLKATETIEQMKQQGVQPNLQAY 688

Query: 437 ----NKWTSL-----ALMVYREAIVAGTIP 457
               + W S      AL+ Y E   AG IP
Sbjct: 689 TTLIHGWASASYPEKALICYDEMKSAGMIP 718



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 146/338 (43%), Gaps = 17/338 (5%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           FK +  P      +L++      D   A      ++ AG++ +   YT LI   A +  +
Sbjct: 184 FKRIKKPKQRDHTLLVNYYGKRGDKHSARAAFESMRAAGIEPNVHSYTNLIHAYAVAQDL 243

Query: 144 DAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITI 194
                       E V P+   ++ +I+  G+ G V+ A        +E  H  D   +  
Sbjct: 244 RGAIACVEEMEAEGVSPNAATYSVIISGYGRLGDVEAAERWFQRALSENWHHND---VIY 300

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM-- 252
             ++ A   AG ++RA  +   + +  ++ T  +Y + ++        +   +V+  +  
Sbjct: 301 NNIIHAYCKAGNMERAEAIMTAMEEQGLEATLGLYNMLMDGYVHCRAVDKCLNVFRRLKA 360

Query: 253 -TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
            T+ G+ P  V    LI+     GK++ A +I  E ++QGI     +YS ++       +
Sbjct: 361 RTETGLSPTVVSYGCLINLYSKLGKMDKALQISNEMEDQGIKHNRKTYSMIIDGYVQLGD 420

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYS 370
              A  ++E M +  +KP   T N L+ A C   Q+ + +E+L+ M+S G CP T+ TY+
Sbjct: 421 TANAFSVFEDMSNAGIKPDGITYNILMNAFCKNGQMNRALELLARMES-GDCPPTLRTYT 479

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           I++    +  D+ +    +   K  G  P+   +  I+
Sbjct: 480 IIIDGFMKIGDLRMAFETVRDMKMAGFRPSAATYNVIM 517



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 128/299 (42%), Gaps = 29/299 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
            ++ G +    + + DM+  G       Y+     + ++ +  + A    ++V    +P 
Sbjct: 485 FMKIGDLRMAFETVRDMKMAGFRPSAATYNVIMHGLAQAGQMDRAASIIDEMVVAGVHPN 544

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF---- 147
             ++  L+   A   D   AF+    ++E GLK D   Y +L+  C K+G++ +      
Sbjct: 545 ERSYTTLIEGYACIGDMGLAFKYFNRIKEVGLKPDVIAYASLLKACCKAGRMQSTLAITA 604

Query: 148 ----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 V  +  ++N L+    Q G +  A D++ +M  E   + PD  +  + + AC  
Sbjct: 605 EMAAAGVPMNNYIYNILLDGWAQRGDMWEASDIMQKMRHE--GLTPDIHSYTSFINACCK 662

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-- 261
           AG + +A E  + + +  ++   + YT  I+  +     E A   YD+M   G+IPD+  
Sbjct: 663 AGDMLKATETIEQMKQQGVQPNLQAYTTLIHGWASASYPEKALICYDEMKSAGMIPDKPL 722

Query: 262 --VFLSALIDFAGHAGKV--EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
               +++L+  A  A +   +    +  E  +QGI V            + AK+WQ+ L
Sbjct: 723 YHCIMTSLLSRAAVARETVFDGVLRVTSEMVDQGICVDF----------ATAKHWQRFL 771


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 184/395 (46%), Gaps = 21/395 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFK 85
           ++N LI+    +G I + +   + +  +G   +D+V +    N +CK  + I  A +  K
Sbjct: 133 TFNTLIKGLCLKGHIHQALHFHDKVVAQGF-HLDQVSYGTLINGLCKVGR-ITAALQLLK 190

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            V      P    +NM++     +K    AF +   +    +  D   Y  LI+  +   
Sbjct: 191 RVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVS 250

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K++           EN+ P+   FN L+    + G V+ A  VLA M  +   + PD +T
Sbjct: 251 KLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKD--DIKPDVVT 308

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +LM    +  +V++A++++  +    +    ++YT  +N   +    + A +++++M 
Sbjct: 309 YNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMR 368

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            + +IP+ V  S+LID     G++  A +++ E  ++G    I++YSS++ A     +  
Sbjct: 369 CRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVD 428

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA+ L  ++K   ++P + T   LI  LC   +L     V  D+   G   +   Y++++
Sbjct: 429 KAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMI 488

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                K   +  L LLS+ +++G IPN   ++ +I
Sbjct: 489 QGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVI 523



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 92/419 (21%), Positives = 169/419 (40%), Gaps = 82/419 (19%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P    FN ++S    +K    A  + + ++  G+++D   +  LI   ++ G     F
Sbjct: 57  PTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFSQLGLNSLSF 116

Query: 148 --------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                   +   P  + FN LI      G + +A     ++ A+   +  D ++ G L+ 
Sbjct: 117 SIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHL--DQVSYGTLIN 174

Query: 200 ACANAGQVDRAREVYKMIH---------KYNI------------------------KGTP 226
                G++  A ++ K +           YN+                        +  P
Sbjct: 175 GLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICP 234

Query: 227 EVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
           +V+T    I+  S      +A  +++ M K+ + P+    + L+D     GKV  A  +L
Sbjct: 235 DVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVL 294

Query: 285 QEAKNQGISVGIISYSSLM-GACS-NAKNWQK---------------------------- 314
                  I   +++Y+SLM G CS N  N  K                            
Sbjct: 295 AIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKI 354

Query: 315 -----ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
                A+ L+E M+  K+ P V T ++LI  LC   ++   ++++ +M   G  PN +TY
Sbjct: 355 KMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTY 414

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
           S +L A  +   V+  + LL+  K+ G+ P++  +  +I G+C S R E A+ + E +L
Sbjct: 415 SSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLL 473



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/284 (21%), Positives = 127/284 (44%), Gaps = 4/284 (1%)

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           + +N  P    FN ++++  ++     A  +  +M  E++ ++ D  T   L+   +  G
Sbjct: 53  LHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQM--ELNGIESDFFTFNILINCFSQLG 110

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
               +  ++  I K     T   +   I      G    A   +D +  +G   D+V   
Sbjct: 111 LNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYG 170

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LI+     G++ AA ++L+    + +    + Y+ ++     AK    A +LY  M + 
Sbjct: 171 TLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAK 230

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           ++ P V T NALI+      +L   +++ + MK   + PN  T++IL+    ++  V   
Sbjct: 231 RICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDA 290

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLS 427
            ++L+   +D + P++V +  ++ G CS  +  KA+ + + + S
Sbjct: 291 KVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMAS 334


>gi|357502615|ref|XP_003621596.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496611|gb|AES77814.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 157/346 (45%), Gaps = 17/346 (4%)

Query: 77  IKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           I  A R F+         T+ +F+ ++S    +     A  + R ++  G+  +   Y +
Sbjct: 194 INHALRLFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSMRSWGVYPNLISYNS 253

Query: 133 LITTCAKSGKVD----------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
           LI   AK G+VD           + E + PDR+ +N+L++ C   G  + A  +L+EM+ 
Sbjct: 254 LIDAGAK-GEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKLLSEMDQ 312

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
           +   +  D  T    +      GQ+D AR V + +    +  T   Y+  I+ C++    
Sbjct: 313 K--GIVRDAFTYNTYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLL 370

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           E A ++Y++M  + +  D V  + ++      G+ + A    +E ++ G+   +++Y++L
Sbjct: 371 EDALNLYEEMKLRSISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNAL 430

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +        + +   L+E MK+  + P   T + +I     G    + M+V  D K   L
Sbjct: 431 LSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQL 490

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             + + Y+ ++ +  +   VE  +MLL    E G+ PN+V F  II
Sbjct: 491 EVDVVFYTSIIDSLCKNGLVESSIMLLIAMIEKGIKPNVVTFNSII 536



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 104/453 (22%), Positives = 175/453 (38%), Gaps = 94/453 (20%)

Query: 18  HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           H N  +  S  + +Y R    G  S+ +DL   M   G+      Y++      K +   
Sbjct: 209 HGNTVYSFSAMISAYGR---NGHFSDAVDLFRSMRSWGVYPNLISYNSLIDAGAKGEVDF 265

Query: 78  KEAFRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
               +FF       +VP+    T+N L+SVCAS    E A ++L  + + G+  D   Y 
Sbjct: 266 DVVVKFFDEMLAEGIVPDRL--TYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYN 323

Query: 132 TLITTCAKSGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           T + T  K G++D             V P  V ++ +I  C ++  ++ A ++  EM   
Sbjct: 324 TYLDTLCKGGQIDLARRVLEEMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLR 383

Query: 184 VHPVDP---------------------------------DHITIGALMKACANAGQVDRA 210
              VD                                  D +T  AL+      G  D  
Sbjct: 384 SISVDRVSYNTMVGIYAKLGRFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEV 443

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           R +++ +  +NI      Y+  I+  ++ G ++ A  VY D  K  +  D VF +++ID 
Sbjct: 444 RRLFEEMKAWNIYPNTLTYSTMIDVYTKGGMFQEAMDVYKDFKKAQLEVDVVFYTSIIDS 503

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK-P 329
               G VE++  +L     +GI   +++++S++ A   +      LE   H  S  ++ P
Sbjct: 504 LCKNGLVESSIMLLIAMIEKGIKPNVVTFNSIIDASRQSP----TLEYGVHGSSQAVEYP 559

Query: 330 TVSTMNALITALCDG--------DQLPKTMEVLS-------------------------D 356
           T      L + L DG        D++ K  E L+                          
Sbjct: 560 T----EQLSSMLIDGAFQNKTGDDRILKMFEQLAAEKAGHREKDRKGRQDQHCILWLFQK 615

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
           M  L + PN +T+S +L AC R +  E   MLL
Sbjct: 616 MHELNIKPNVVTFSAILNACSRCNSFEDASMLL 648



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/308 (23%), Positives = 148/308 (48%), Gaps = 15/308 (4%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDA---MFENVKPDR-----VVFNALITACGQSG 168
           + ++ G  A  KL +T+I T  + G+++    +FE+ + +        F+A+I+A G++G
Sbjct: 168 IWKQNGRIAKGKLVSTMIGTLGRLGEINHALRLFESARLEGHGNTVYSFSAMISAYGRNG 227

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE 227
               A D+   M +    V P+ I+  +L+ A A  G+VD    V K   +   +G  P+
Sbjct: 228 HFSDAVDLFRSMRS--WGVYPNLISYNSLIDAGAK-GEVD-FDVVVKFFDEMLAEGIVPD 283

Query: 228 --VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
              Y   ++ C+  G WE A  +  +M +KG++ D    +  +D     G+++ A  +L+
Sbjct: 284 RLTYNSLLSVCASKGMWETAQKLLSEMDQKGIVRDAFTYNTYLDTLCKGGQIDLARRVLE 343

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           E  ++ +   +++YS+++  C+ A   + AL LYE MK   +     + N ++       
Sbjct: 344 EMSSRRVWPTVVTYSTMIDGCAKANLLEDALNLYEEMKLRSISVDRVSYNTMVGIYAKLG 403

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           +  + +    +M+S G+  + +TY+ LL    R    +    L  + K   + PN + + 
Sbjct: 404 RFDEAIGQCKEMESCGMKRDVVTYNALLSGYGRYGMYDEVRRLFEEMKAWNIYPNTLTYS 463

Query: 406 CIIGMCSR 413
            +I + ++
Sbjct: 464 TMIDVYTK 471



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 79/167 (47%), Gaps = 4/167 (2%)

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
           + D +++       GH       F+ +   +N  I+ G +  S+++G          AL 
Sbjct: 141 VEDYIYMLKEFGNTGHFLLATKCFDFIIWKQNGRIAKGKL-VSTMIGTLGRLGEINHALR 199

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L+E  +      TV + +A+I+A          +++   M+S G+ PN I+Y+ L+ A  
Sbjct: 200 LFESARLEGHGNTVYSFSAMISAYGRNGHFSDAVDLFRSMRSWGVYPNLISYNSLIDAGA 259

Query: 378 RKD-DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTL 421
           + + D +V +    +   +G++P+ + +  ++ +C+ +  +E A+ L
Sbjct: 260 KGEVDFDVVVKFFDEMLAEGIVPDRLTYNSLLSVCASKGMWETAQKL 306


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 113/504 (22%), Positives = 210/504 (41%), Gaps = 94/504 (18%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRL----IRQGRISE--------------------- 43
           L+F +   K   + H+V    ++YNRL    +R  RI E                     
Sbjct: 8   LRFFHWASKQQGFDHNV----YTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYA 63

Query: 44  --------------CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK--EAFRFFKLV 87
                           +LLE+M   G +    +Y+     +CK++   K  + FR  +  
Sbjct: 64  VVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECE 123

Query: 88  PN---------------------------------PTLSTFNMLMSVCASSKDSEGAFQV 114
            N                                 P   T+N+L++          A+ +
Sbjct: 124 KNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLL 183

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MFEN-VKPDRVVFNALITACGQ 166
           L+ ++E+GL  +   Y+T+I    +  KVD        M EN   P+ V +N L++   +
Sbjct: 184 LKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCR 243

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           +G +D A+++L EM      + PD  +   LM      G++D A +V++     N    P
Sbjct: 244 NGLMDEAYELLDEMRE--RGLQPDKFSYDTLMAGLCKTGKIDMALKVFE--DNSNGDCPP 299

Query: 227 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
           +V  Y+  I    + G  + AC +++ M +    PD V  +AL+D      +++ A ++L
Sbjct: 300 DVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVL 359

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
           +  +++  +  +I+YSSL+         + A E+++ M    ++P V T N+LI   C  
Sbjct: 360 ETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMT 419

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           + +   + ++ +M + G  P+ ITY+ L+    +         L    K     P+++ +
Sbjct: 420 NGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITY 479

Query: 405 KCII-GMCS-RRYEKARTLNEHVL 426
            C+I G C   R + ARTL + +L
Sbjct: 480 SCLIGGFCKLERIDMARTLFDDML 503



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 114/527 (21%), Positives = 214/527 (40%), Gaps = 96/527 (18%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK--EAFRFFKLVPN--- 89
           L + G + +  +LLE+M   G +    +Y+     +CK++   K  + FR  +   N   
Sbjct: 69  LCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVIT 128

Query: 90  ------------------------------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
                                         P   T+N+L++          A+ +L+ ++
Sbjct: 129 WTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMK 188

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDA-------MFEN-VKPDRVVFNALITACGQSGAVD 171
           E+GL  +   Y+T+I    +  KVD        M EN   P+ V +N L++   ++G +D
Sbjct: 189 ESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMD 248

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
            A+++L EM      + PD  +   LM      G++D                       
Sbjct: 249 EAYELLDEMRE--RGLQPDKFSYDTLMAGLCKTGKID----------------------- 283

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
                        A  V++D +     PD V  S LI     AG+++ A ++ ++ +   
Sbjct: 284 ------------MALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENS 331

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
               ++++++LM         Q+A ++ E M+     P V T ++LI  LC   Q+    
Sbjct: 332 CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQ 391

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
           EV   M   G+ PN +TY+ L+      + V+  L+L+ +    G +P+++ +  +I G+
Sbjct: 392 EVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGL 451

Query: 411 C--SRRYE--------KARTLNEHVLSFN---SGRPQIENKWTSLALMVYREAIVAGTIP 457
           C   R  E        KA+  N  V++++    G  ++E     +A  ++ + +    +P
Sbjct: 452 CKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLER--IDMARTLFDDMLKQAVLP 509

Query: 458 TVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
            V   S ++         D  ERL+E +  S  +       SL+DGF
Sbjct: 510 DVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGF 556



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 111/463 (23%), Positives = 185/463 (39%), Gaps = 85/463 (18%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN LI    +  ++     LL++M+  GL      Y       C+ Q  +  A++ F+ 
Sbjct: 163 TYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCR-QTKVDTAYKLFRQ 221

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +V N   P L T+N L+S    +   + A+++L  ++E GL+ D   Y TL+    K+GK
Sbjct: 222 MVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK 281

Query: 143 VD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEM-------------- 180
           +D    +FE+       PD V ++ LI    ++G +D A  +  +M              
Sbjct: 282 IDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTA 341

Query: 181 -------------------NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
                                E     P+ IT  +L+      GQV  A+EV+K +    
Sbjct: 342 LMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRG 401

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           I+     Y   I+    T   + A  + ++MT  G +PD +  + LID     G+   A 
Sbjct: 402 IEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEAN 461

Query: 282 EILQEAKNQGISVGIISYSSLMGA-CS--------------------------------- 307
            +  + K +  +  +I+YS L+G  C                                  
Sbjct: 462 RLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGY 521

Query: 308 -NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            NA     A  L E M +    P V T  +L+   C   ++ +   VL  M   G  PN 
Sbjct: 522 CNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNV 581

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           +TY+ L+ A  R     V   LL +   +GV PN++ ++ +IG
Sbjct: 582 VTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIG 624



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 167/377 (44%), Gaps = 23/377 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFF-KLVPN--- 89
           L + G+I   + + ED    G    D V Y      +CK+ + + EA + F K+  N   
Sbjct: 276 LCKTGKIDMALKVFED-NSNGDCPPDVVAYSTLIAGLCKAGR-LDEACKLFEKMRENSCE 333

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DA--- 145
           P + TF  LM         + A QVL  +++     +   Y++LI    K+G+V DA   
Sbjct: 334 PDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEV 393

Query: 146 ----MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               +   ++P+ V +N+LI     +  VD A  ++ EM A      PD IT   L+   
Sbjct: 394 FKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTAT--GCLPDIITYNTLIDGL 451

Query: 202 ANAGQVDRAREVY-KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              G+   A  ++  M  K+     P+V  Y+  I    +    + A +++DDM K+ V+
Sbjct: 452 CKTGRAPEANRLFGDMKAKF---CNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVL 508

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD V  S L++   +AG V+ A  +L+E      S  + +Y+SL+          +A  +
Sbjct: 509 PDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRV 568

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            + M     +P V T  ALI A C   +      +L +M   G+ PN ITY  L+     
Sbjct: 569 LKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCG 628

Query: 379 KDDVEVGLMLLSQAKED 395
             D+E    +L + + D
Sbjct: 629 TGDLEEARKILERLERD 645



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 156/373 (41%), Gaps = 55/373 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L +  R+ E   +LE ME +        Y +    +CK+ + +++A   FK +      P
Sbjct: 346 LCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQ-VRDAQEVFKRMIVRGIEP 404

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMF 147
            + T+N L+     +   + A  ++  +   G   D   Y TLI    K+G+    + +F
Sbjct: 405 NVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLF 464

Query: 148 ENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
            ++K     PD + ++ LI    +   +D A  +  +M  +   V PD +T   L++   
Sbjct: 465 GDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA--VLPDVVTFSTLVEGYC 522

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPD 260
           NAG VD A  + + +   +   +P+VYT    ++   + G    A  V   M K+G  P+
Sbjct: 523 NAGLVDDAERLLEEMVASDC--SPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPN 580

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA----- 315
            V  +ALID    AGK   A+ +L+E    G+   +I+Y SL+G      + ++A     
Sbjct: 581 VVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILE 640

Query: 316 -------------------------------LELYEHMKSIKLKPTVSTMNALITALCDG 344
                                          LEL E +K     P      ALI  LC G
Sbjct: 641 RLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQG 700

Query: 345 DQLPKTMEVLSDM 357
            +L K MEVL +M
Sbjct: 701 KELGKAMEVLEEM 713



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 109/270 (40%), Gaps = 32/270 (11%)

Query: 278 EAAFEILQEA-KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           +AA      A K QG    + +Y+ L  A   A+   +   + ++     + P V T   
Sbjct: 5   DAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAV 64

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKED 395
           +I  LC    L K  E+L +M+  G  P+   Y+ ++ A C+ ++  +      S   E 
Sbjct: 65  VIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEK 124

Query: 396 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ--IENKWT------------- 440
            VI   +M   I G+C     KA  L E    F   + +  + N+WT             
Sbjct: 125 NVITWTIM---IDGLC-----KANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHK 176

Query: 441 -SLALMVYREAIVAGTIPTVEVVSKVLG--CLQLPYNADIR--ERLVENLGVSADALKRS 495
              A ++ +E   +G  P V   S V+   C Q   +   +   ++VEN G   + +  +
Sbjct: 177 VHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVEN-GCMPNLVTYN 235

Query: 496 NLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
            L S +   G  D  A+ LL+E    G+ P
Sbjct: 236 TLLSGLCRNGLMD-EAYELLDEMRERGLQP 264


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 132/277 (47%), Gaps = 4/277 (1%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           +PD V +  ++    + G  D AF++L +M  E   ++P  +    ++        +D A
Sbjct: 13  QPDLVTYGVVVNGLCKRGDTDLAFNLLNKM--EQGKLEPGVLIYNTIIDGLCKYKHMDDA 70

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
             ++K +    I+     Y+  I+C    G W  A  +  DM ++ + PD    SALID 
Sbjct: 71  LNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDA 130

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               GK+  A ++  E   + I   I++YSSL+          +A +++E M S    P 
Sbjct: 131 FVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPD 190

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           V T N LI   C   ++ + MEV  +M   GL  NT+TY+IL+    +  D ++   +  
Sbjct: 191 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 250

Query: 391 QAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
           +   DGV PN++ +  ++ G+C   + EKA  + E++
Sbjct: 251 EMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 287



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 158/323 (48%), Gaps = 18/323 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------- 142
           P +  +N ++      K  + A  + + ++  G++ +   Y++LI+     G+       
Sbjct: 49  PGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 108

Query: 143 -VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             D +   + PD   F+ALI A  + G +  A  +  EM      +DP  +T  +L+   
Sbjct: 109 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVK--RSIDPSIVTYSSLINGF 166

Query: 202 ANAGQVDRAREVYK-MIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
               ++D A+++++ M+ K+     P+V  Y   I    +    E    V+ +M+++G++
Sbjct: 167 CMHDRLDEAKQMFEFMVSKHCF---PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLV 223

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALE 317
            + V  + LI     AG  + A EI +E  + G+   I++Y++L+ G C N K  +KA+ 
Sbjct: 224 GNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGK-LEKAMV 282

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           ++E+++  K++PT+ T N +I  +C   ++    ++  ++   G+ P+ + Y+ ++    
Sbjct: 283 VFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFC 342

Query: 378 RKDDVEVGLMLLSQAKEDGVIPN 400
           RK   E    L  + KEDG +PN
Sbjct: 343 RKGSKEEADALFKEMKEDGTLPN 365



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 145/335 (43%), Gaps = 19/335 (5%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPN 89
           L   GR S+   LL DM ERK  ++ D    +   +    +  + EA + +    K   +
Sbjct: 96  LCNYGRWSDASRLLSDMIERK--INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 153

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P++ T++ L++  C   +  E A Q+   +       D   Y TLI    K  +V+   E
Sbjct: 154 PSIVTYSSLINGFCMHDRLDE-AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGME 212

Query: 149 NVKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             +         + V +N LI    Q+G  D A ++  EM ++  P  P+ +T   L+  
Sbjct: 213 VFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP--PNIMTYNTLLDG 270

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G++++A  V++ + +  ++ T   Y I I    + G  E    ++ +++ KGV PD
Sbjct: 271 LCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPD 330

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + +I      G  E A  + +E K  G       Y++L+ A     + + + EL +
Sbjct: 331 VVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 390

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
            M+S       ST+  +   L DG      +++LS
Sbjct: 391 EMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDMLS 425



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 153/357 (42%), Gaps = 19/357 (5%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN +I    +   + + ++L ++ME KG+      Y +    +C   +    +     ++
Sbjct: 54  YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 113

Query: 88  P---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
               NP + TF+ L+           A ++   + +  +      Y++LI       ++D
Sbjct: 114 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 173

Query: 145 A---MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
               MFE     +  PD V +N LI    +   V+   +V  EM+     +  + +T   
Sbjct: 174 EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ--RGLVGNTVTYNI 231

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L++    AG  D A+E++K +    +      Y   ++   + G  E A  V++ + +  
Sbjct: 232 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 291

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + P     + +I+    AGKVE  +++      +G+   +++Y++++       + ++A 
Sbjct: 292 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 351

Query: 317 ELYEHMKSIKLKPTVSTMNALITA-LCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            L++ MK     P     N LI A L DGD+   + E++ +M+S G   +  T  ++
Sbjct: 352 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDR-EASAELIKEMRSCGFAGDASTIGLV 407



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 93/183 (50%), Gaps = 2/183 (1%)

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           ++ D M  KG  PD V    +++     G  + AF +L + +   +  G++ Y++++   
Sbjct: 2   ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 61

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
              K+   AL L++ M++  ++P V T ++LI+ LC+  +      +LSDM    + P+ 
Sbjct: 62  CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 121

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEH 424
            T+S L+ A  ++  +     L  +  +  + P++V +  +I G C   R ++A+ + E 
Sbjct: 122 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 181

Query: 425 VLS 427
           ++S
Sbjct: 182 MVS 184


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 152/334 (45%), Gaps = 12/334 (3%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
           P + T+N LM  +C  SK  E A  + R++ +  +  D   Y T+I    KSG +     
Sbjct: 278 PDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFT-YNTIIDGYCKSGMLQEATE 336

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              DA+F+   PDRV + +LI      G ++RA ++  E  A+   + PD +   +L+K 
Sbjct: 337 LLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNE--AQAKDLKPDLVVYNSLVKG 394

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G +  A +V   + +         Y I IN   + G+   A  V +D   KG +PD
Sbjct: 395 LCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPD 454

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID      K+++A ++++     GI+  +I+Y+S++     A   ++  E +E
Sbjct: 455 VFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFE 514

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M     +P   T N LI   C  +QL +   V+  M   GL P+ ++++ L+    R  
Sbjct: 515 EMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNG 574

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           D++   +L  +  E G       F  +IG  S +
Sbjct: 575 DLDGAYLLFQKLDEKGYSATADTFNILIGAYSSK 608



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 160/388 (41%), Gaps = 19/388 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    + G + E  +LL+D   KG +  D+V +    N   ++  I+ A   F  
Sbjct: 317 TYNTIIDGYCKSGMLQEATELLKDAVFKGFVP-DRVTYCSLINGLCAEGDIERALELFNE 375

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                  P L  +N L+           A QV+  + E G   D   Y  +I    K G 
Sbjct: 376 AQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGN 435

Query: 143 V--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +        DA+ +   PD   FN LI    +   +D A  ++  M    + + PD IT 
Sbjct: 436 ISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM--WTYGIAPDVITY 493

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +++     AG+     E ++ +     +     Y I I    +    E A  V   M +
Sbjct: 494 NSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQ 553

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G++PD V  + LI      G ++ A+ + Q+   +G S    +++ L+GA S+  N Q 
Sbjct: 554 DGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQM 613

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A +++  M S   KP + T   L+  LC    + +    L++M S G  P+  T+  +L 
Sbjct: 614 AEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLN 673

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLV 402
                  V   + ++      GV+P +V
Sbjct: 674 LLAMNHRVSEAVAIIHIMVRMGVVPEVV 701



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 166/399 (41%), Gaps = 25/399 (6%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKA- 76
           V+  + +YN L+R      ++ E    L  M  +G +  D  Y+      CKS   Q+A 
Sbjct: 276 VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEAT 335

Query: 77  --IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
             +K+A  F   VP+    T+  L++   +  D E A ++    Q   LK D  +Y +L+
Sbjct: 336 ELLKDAV-FKGFVPDRV--TYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLV 392

Query: 135 TTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               + G +        + + E   PD   +N +I    + G +  A  V+ +  A V  
Sbjct: 393 KGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMND--AIVKG 450

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             PD  T   L+       ++D A ++ + +  Y I      Y   +N   + G  +   
Sbjct: 451 YLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVN 510

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GA 305
             +++M  KG  P+ +  + LI+      ++E A  ++      G+    +S+++L+ G 
Sbjct: 511 ETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGF 570

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           C N  +   A  L++ +       T  T N LI A      +    ++  +M S G  P+
Sbjct: 571 CRNG-DLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPD 629

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
             TY IL+    +  +V+     L++    G +P++  F
Sbjct: 630 LYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATF 668



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 53/268 (19%), Positives = 111/268 (41%), Gaps = 5/268 (1%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           + ALI     +G +D     LA   + + P     + + ++ +A A AG++  A + ++ 
Sbjct: 38  YRALIRELVSAGRLDDVDAALASARSHLAPDSLQPLYVASI-QAYARAGRLRAAVDAFER 96

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           +  +        Y   ++        + A  VY  M   GV PD    +  +      G+
Sbjct: 97  MDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGR 156

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
              A  +L+    +G      +Y +++       +   A  L++ M    + P V+T N 
Sbjct: 157 PHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNN 216

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           ++ ALC    + ++  +L+ +   G+  N  T +I +        +E  + L+ +     
Sbjct: 217 VLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGLCEDGRLEEAVALVERMGA-Y 275

Query: 397 VIPNLVMFKCII-GMC--SRRYEKARTL 421
           V P++V +  ++ G+C  S+  E A+ L
Sbjct: 276 VAPDVVTYNTLMRGLCKDSKVQEAAQYL 303


>gi|224090111|ref|XP_002308939.1| predicted protein [Populus trichocarpa]
 gi|222854915|gb|EEE92462.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 171/393 (43%), Gaps = 57/393 (14%)

Query: 81  FRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           FR+ K   N    T  +NM++ + A    ++ A  +   +Q+   K D +    LI    
Sbjct: 122 FRWMKNQRNYCARTDIYNMMIRLHARHNWTDQARGLFFEMQKWRCKPDAETCNALINAHG 181

Query: 139 KSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           +SG+         D + + + P R  +N LI ACG SG    A  +  +M    + V PD
Sbjct: 182 RSGQWRWAMNIMEDMLQKAIPPSRSTYNNLINACGSSGNWREALKLCKKMTE--NGVGPD 239

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +T   ++ A     Q  +A   ++++   NI+       I I C ++ G +E A  ++ 
Sbjct: 240 LVTHNIILSAYKTGAQYAKALSYFELMKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFK 299

Query: 251 DMTKKGV--IPDEVFLSALIDFAGHAGKVE------------------------------ 278
            M +K     PD V  +++I      G++E                              
Sbjct: 300 SMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYAS 359

Query: 279 -----AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
                 A  +    KN G+   ++SY+SL+ +   ++  +KA E++E MK  KLKP + +
Sbjct: 360 HGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVS 419

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA---CERKDDVEVGLMLLS 390
            NA+I A      L + +EVL +M+  G+ PN ++   LL A   C RK +++V   +L 
Sbjct: 420 YNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTLLAACGRCSRKVNIDV---VLQ 476

Query: 391 QAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 421
            A+   +  N + +   IG  M    +EKA ++
Sbjct: 477 AAERRHIKLNTIAYNSAIGSYMNVGEFEKATSM 509



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 151/335 (45%), Gaps = 37/335 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---GKVDAM 146
           P + ++N LM   AS   ++ A  V   ++ +GL+ D   YT+L+ +  +S    K   +
Sbjct: 345 PNIVSYNTLMGAYASHGMNKEALSVFNAIKNSGLRPDVVSYTSLLNSYGRSQQPKKAREV 404

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE      +KP+ V +NA+I A G +G +  A +VL EM  E   + P+ ++I  L+ AC
Sbjct: 405 FEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREM--EQDGIYPNAVSICTLLAAC 462

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               +      V +   + +IK     Y  AI      G++E A S+Y  M K  VIPD 
Sbjct: 463 GRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDA 522

Query: 262 V--------------------FLSALIDF-------AGHAGKVEAAFEILQEAKNQGISV 294
           V                    FLS ++D        A  +GK+  A  +  + K  G S 
Sbjct: 523 VTFTVLISGCCKMTKYCEALEFLSEMMDLKIPMTKEAYSSGKITEAESMFNKMKMAGCSP 582

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
            +++Y+ ++ A + A++W+KA  L + M+   ++P     +AL+ A   G    K + + 
Sbjct: 583 DVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTIACSALMRAFNKGGDPSKVLILA 642

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
             M+   +  +   +  ++ AC    D    + L+
Sbjct: 643 EFMREKEIPLSDAIFFEMVSACSLLRDWRTTIELI 677



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 177/417 (42%), Gaps = 48/417 (11%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G   E + L + M   G+   D V H    +  K+     +A  +F+L
Sbjct: 207 TYNNLINACGSSGNWREALKLCKKMTENGV-GPDLVTHNIILSAYKTGAQYAKALSYFEL 265

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE--AGLKADCKLYTTLITTCAKS 140
           +      P  +T N+++         E A  + + ++E  A    D   +T++I   + +
Sbjct: 266 MKGTNIRPDTTTLNIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDVVTFTSIIHLYSVN 325

Query: 141 GKVD---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+++   A+F     E +KP+ V +N L+ A    G    A  V   +      + PD +
Sbjct: 326 GQIENCRAVFSTMVAEGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKNS--GLRPDVV 383

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +  +L+ +   + Q  +AREV++M+ +  +K     Y   I+     G    A  V  +M
Sbjct: 384 SYTSLLNSYGRSQQPKKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREM 443

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            + G+ P+ V +  L+   G   +      +LQ A+ + I +  I+Y+S +G+  N   +
Sbjct: 444 EQDGIYPNAVSICTLLAACGRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEF 503

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL------------ 360
           +KA  +Y  M+  K+ P   T   LI+  C   +  + +E LS+M  L            
Sbjct: 504 EKATSMYRSMRKSKVIPDAVTFTVLISGCCKMTKYCEALEFLSEMMDLKIPMTKEAYSSG 563

Query: 361 ---------------GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
                          G  P+ +TY+++L A    +  +    LL + +E  + P+ +
Sbjct: 564 KITEAESMFNKMKMAGCSPDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTI 620



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 134/297 (45%), Gaps = 15/297 (5%)

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           R  F  LI    Q G+++ +  V   M  + +      I    +++  A     D+AR +
Sbjct: 99  RKNFPLLIKEITQKGSIEHSILVFRWMKNQRNYCARTDI-YNMMIRLHARHNWTDQARGL 157

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           +  + K+  K   E     IN   ++G W +A ++ +DM +K + P     + LI+  G 
Sbjct: 158 FFEMQKWRCKPDAETCNALINAHGRSGQWRWAMNIMEDMLQKAIPPSRSTYNNLINACGS 217

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           +G    A ++ ++    G+   +++++ ++ A      + KAL  +E MK   ++P  +T
Sbjct: 218 SGNWREALKLCKKMTENGVGPDLVTHNIILSAYKTGAQYAKALSYFELMKGTNIRPDTTT 277

Query: 334 MNALITALCDGDQLPKTMEVLSDM--KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
           +N +I  L    Q  K + +   M  K     P+ +T++ ++        +E    + S 
Sbjct: 278 LNIIIYCLTKLGQYEKAIGIFKSMREKRAECHPDVVTFTSIIHLYSVNGQIENCRAVFST 337

Query: 392 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF-----NSG-RPQIENKWTSL 442
              +G+ PN+V +  ++G  +     +  +N+  LS      NSG RP + + +TSL
Sbjct: 338 MVAEGLKPNIVSYNTLMGAYA-----SHGMNKEALSVFNAIKNSGLRPDVVS-YTSL 388



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/395 (20%), Positives = 164/395 (41%), Gaps = 46/395 (11%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +   + SYN L+      G   E + +   ++  GL   D V +    N     +  
Sbjct: 340 AEGLKPNIVSYNTLMGAYASHGMNKEALSVFNAIKNSGLRP-DVVSYTSLLNSYGRSQQP 398

Query: 78  KEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           K+A   F+++      P + ++N ++    S+     A +VLR +++ G+  +     TL
Sbjct: 399 KKAREVFEMMKRDKLKPNIVSYNAMIDAYGSNGLLAEAVEVLREMEQDGIYPNAVSICTL 458

Query: 134 ITTCAKSGK---VDAMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +  C +  +   +D + +     ++K + + +N+ I +    G  ++A  +   M     
Sbjct: 459 LAACGRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKS-- 516

Query: 186 PVDPDHITIGALMKACANAGQ---------------VDRAREVYK---------MIHKYN 221
            V PD +T   L+  C    +               +   +E Y          M +K  
Sbjct: 517 KVIPDAVTFTVLISGCCKMTKYCEALEFLSEMMDLKIPMTKEAYSSGKITEAESMFNKMK 576

Query: 222 IKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278
           + G +P+V  YT+ ++  +    W+ AC++  +M +  + PD +  SAL+      G   
Sbjct: 577 MAGCSPDVVTYTMMLHAYNAAEHWKKACALLQEMEEYNIQPDTIACSALMRAFNKGGDPS 636

Query: 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338
               + +  + + I +    +  ++ ACS  ++W+  +EL + M+S     ++  +N L+
Sbjct: 637 KVLILAEFMREKEIPLSDAIFFEMVSACSLLRDWRTTIELIKLMESSFSVVSIGLLNQLL 696

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             L    ++   M++   +   G   N  TYSILL
Sbjct: 697 HLLGKSGKIESMMKLFYKIIGSGAEINCNTYSILL 731



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/305 (21%), Positives = 135/305 (44%), Gaps = 22/305 (7%)

Query: 39  GRISECIDL---LEDMERKGLLDMDKVYHA---RFFNVCKSQKA--IKEAFRFFKLVPNP 90
           GR S  +++   L+  ER+ +      Y++    + NV + +KA  +  + R  K++P+ 
Sbjct: 463 GRCSRKVNIDVVLQAAERRHIKLNTIAYNSAIGSYMNVGEFEKATSMYRSMRKSKVIPDA 522

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
              TF +L+S C        A + L  + +  +    + Y++      K  + ++MF  +
Sbjct: 523 V--TFTVLISGCCKMTKYCEALEFLSEMMDLKIPMTKEAYSS-----GKITEAESMFNKM 575

Query: 151 K-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           K     PD V +  ++ A   +    +A  +L EM  E + + PD I   ALM+A    G
Sbjct: 576 KMAGCSPDVVTYTMMLHAYNAAEHWKKACALLQEM--EEYNIQPDTIACSALMRAFNKGG 633

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
              +   + + + +  I  +  ++   ++ CS   DW     +   M     +     L+
Sbjct: 634 DPSKVLILAEFMREKEIPLSDAIFFEMVSACSLLRDWRTTIELIKLMESSFSVVSIGLLN 693

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+   G +GK+E+  ++  +    G  +   +YS L+       NW+K +E+ E M+  
Sbjct: 694 QLLHLLGKSGKIESMMKLFYKIIGSGAEINCNTYSILLKNLLAVGNWRKYIEVLEWMEEA 753

Query: 326 KLKPT 330
           +++P+
Sbjct: 754 RVQPS 758


>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 686

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 184/406 (45%), Gaps = 24/406 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAF 81
           +YN +I    ++G +     L   M R GL      Y+     +C++ +     A+ +  
Sbjct: 225 TYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEM 284

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K+VP+    T+++L    + + DS+    +     + G+K      + L+    K G
Sbjct: 285 ASRKMVPDGF--TYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSILLNGLCKDG 342

Query: 142 KVDAMFENVKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K+    E ++           V++N LI    Q G ++ AF +  +M + +  + PDHIT
Sbjct: 343 KISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAFSIFQQMKSRL--IRPDHIT 400

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+       ++  A ++   + K  +  + E +   I+   + G  E    +  DM 
Sbjct: 401 YNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQ 460

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +KG+ P+ V   ++++     GK+  A  IL +   + +  G   Y++++ A     +  
Sbjct: 461 EKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTD 520

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A  L E MKS  + P++ T N LI  LC   Q+ +  E+L  +++ GL P+ I+Y+ L+
Sbjct: 521 QAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLI 580

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI---IGMCSRRYE 416
            AC  + + +  L L  +  + G+ P+   ++ +   +G   R +E
Sbjct: 581 SACCYRSNTDRALELEKEMWKCGIKPSPRTYRMLFSSLGGAGRVHE 626



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 176/395 (44%), Gaps = 23/395 (5%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCK 72
           H +   + +YN L+    R GR+ E   +L++M  + ++     Y      H+R  +   
Sbjct: 252 HGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQT 311

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
                +E+ +  K V     +   +L  +C   K S+ A +VL+ +  +GL     +Y T
Sbjct: 312 MLSLFEESVK--KGVKIGAYTCSILLNGLCKDGKISK-AEEVLQTLVNSGLLQTTVIYNT 368

Query: 133 LITTCAKSGKVDAMFEN--------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           LI    + G ++  F          ++PD + +NALI   G+   +  A D++ EM  E 
Sbjct: 369 LINGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEM--EK 426

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
           + V+P   T   L+ A   AGQ+++   +   + +  +K     Y   +N   + G    
Sbjct: 427 NGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILE 486

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A ++ DDM  K V+P     +A+ID     G  + AF + ++ K+ G+   I++Y+ L+ 
Sbjct: 487 AVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIK 546

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                    +A EL + +++  L P V + N LI+A C      + +E+  +M   G+ P
Sbjct: 547 GLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKP 606

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
           +  TY +L  +      V     L  Q  +  V+P
Sbjct: 607 SPRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVP 641



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 152/348 (43%), Gaps = 15/348 (4%)

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +A + F  +P     P   T+N ++       D E  F++   +   GLK +   Y  L+
Sbjct: 206 DAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLL 265

Query: 135 TTCAKSGK-------VDAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
           +   ++G+       +D M    + PD   ++ L     ++G       +  E  +    
Sbjct: 266 SGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEE--SVKKG 323

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           V     T   L+      G++ +A EV + +    +  T  +Y   IN   Q GD E A 
Sbjct: 324 VKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLINGYCQIGDLEGAF 383

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           S++  M  + + PD +  +ALI+  G   ++  A +++ E +  G++  + ++++L+ A 
Sbjct: 384 SIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAY 443

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
             A   +K   +   M+   LKP V +  +++ A C   ++ + + +L DM    + P  
Sbjct: 444 GRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGA 503

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
             Y+ ++ A       +   ML  + K  GV P++V +  +I G+C +
Sbjct: 504 QVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQ 551



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 148/346 (42%), Gaps = 49/346 (14%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---------------------- 144
           D  GAF++L     A  + D   +   +  C  +G +D                      
Sbjct: 135 DVRGAFELL---VAARARPDTFTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPNAFSY 191

Query: 145 -----------------AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
                             +F+      V P+ + +N +I    + G ++  F + ++M  
Sbjct: 192 NVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLR 251

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
             H + P+ IT   L+     AG++     V   +    +      Y+I  +  S+TGD 
Sbjct: 252 --HGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDS 309

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           +   S++++  KKGV       S L++     GK+  A E+LQ   N G+    + Y++L
Sbjct: 310 QTMLSLFEESVKKGVKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTL 369

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +       + + A  +++ MKS  ++P   T NALI  L   +++ +  +++ +M+  G+
Sbjct: 370 INGYCQIGDLEGAFSIFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGV 429

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            P+  T++ L+ A  R   +E   ++LS  +E G+ PN+V +  I+
Sbjct: 430 NPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIV 475



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 128/317 (40%), Gaps = 79/317 (24%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    +  RI+E  DL+ +ME+ G+                              
Sbjct: 400 TYNALINGLGKVERITEAHDLVIEMEKNGV------------------------------ 429

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--- 143
             NP++ TFN L+     +   E  F +L  +QE GLK +   Y +++    K+GK+   
Sbjct: 430 --NPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEA 487

Query: 144 ----DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP------------ 186
               D MF ++V P   V+NA+I A  + G+ D+AF +  +M +   P            
Sbjct: 488 VAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKG 547

Query: 187 ---------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
                                + PD I+   L+ AC      DRA E+ K + K  IK +
Sbjct: 548 LCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEMWKCGIKPS 607

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
           P  Y +  +     G      ++Y  M  K V+P     + ++D     G+      + +
Sbjct: 608 PRTYRMLFSSLGGAGRVHEMENLYQQMLDKDVVPCSGIYNIMVDAYAKCGEESKVEALRK 667

Query: 286 EAKNQGISVGIISYSSL 302
           E  ++GI+VG   Y+S+
Sbjct: 668 EMSDKGIAVG--DYTSM 682



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 7/156 (4%)

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT 330
           G    V  AFE+L  A+ +  +    +++  + AC  A +  +A+ +   M       P 
Sbjct: 131 GRHADVRGAFELLVAARARPDT---FTWNKAVQACVVAGDLDEAVGMLRRMGCDGAPAPN 187

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
             + N +I  L         +++  +M    + PN ITY+ ++    +K D+E G  L S
Sbjct: 188 AFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRLWS 247

Query: 391 QAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNE 423
           Q    G+ PN++ +  ++ G+C   R  E A  L+E
Sbjct: 248 QMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDE 283


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 173/408 (42%), Gaps = 34/408 (8%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
           P + T+N LM  +C  SK  E A Q LR +   G   D   Y T+I    K   +     
Sbjct: 182 PDVVTYNTLMRGLCKDSKVQEAA-QYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATE 240

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              DA+F+   PDRV + +LI      G V+RA ++  E  A+   + PD +   +L+K 
Sbjct: 241 LLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNE--AQAKDLKPDLVVYNSLVKG 298

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G +  A +V   + +         Y I IN   + G+   A  V +D   KG +PD
Sbjct: 299 LCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPD 358

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + +ID      K+++A ++++     GI+   I+Y+S++     A   ++  E +E
Sbjct: 359 VFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFE 418

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M     +P   T N LI   C  +QL +   V+  M   GL P+TI+++ L+    R  
Sbjct: 419 EMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNG 478

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIG-----------------MCSRRYEKARTLNE 423
           D++   +L  +  E G       F  +IG                 M S+ Y+       
Sbjct: 479 DLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYR 538

Query: 424 HVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 471
            ++  +     ++  +  LA MV +     G +P++    +VL  L +
Sbjct: 539 VLVDGSCKAANVDRAYVHLAEMVSK-----GFVPSMATFGRVLNSLAM 581



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 162/388 (41%), Gaps = 19/388 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    ++  + E  +LL+D   KG +  D+V +    N   ++  ++ A   F  
Sbjct: 221 TYNTIIDGYCKRDMLQEATELLKDAIFKGFVP-DRVTYCSLINGLCAEGDVERALELFNE 279

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                  P L  +N L+           A QV+  + E G   D   Y  +I    K G 
Sbjct: 280 AQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGN 339

Query: 143 V--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +        DA+ +   PD   FN +I    +   +D A  ++  M   ++ + PD IT 
Sbjct: 340 ISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERM--WMYGIAPDAITY 397

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +++     AG+     E ++ +     +     Y I I    +    E A  V   M++
Sbjct: 398 NSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQ 457

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G++PD +  + LI      G ++ A+ + Q+   +G S    +++ L+GA S+  N Q 
Sbjct: 458 DGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQM 517

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A +++  M S   KP + T   L+   C    + +    L++M S G  P+  T+  +L 
Sbjct: 518 AEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLN 577

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLV 402
           +      V   + ++      GV+P +V
Sbjct: 578 SLAMNHRVSEAVAIIHIMVRMGVVPEVV 605



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/399 (21%), Positives = 165/399 (41%), Gaps = 25/399 (6%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  + +YN L+R      ++ E    L  M  +G +  D  Y+      CK +  ++EA
Sbjct: 180 IAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCK-RDMLQEA 238

Query: 81  FRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
               K       VP+    T+  L++   +  D E A ++    Q   LK D  +Y +L+
Sbjct: 239 TELLKDAIFKGFVPDRV--TYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLV 296

Query: 135 TTCAKSGKV-------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               + G +       + M E+   PD   +N +I    + G +  A  V+ +  A V  
Sbjct: 297 KGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMND--AIVKG 354

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             PD  T   ++       ++D A ++ + +  Y I      Y   +N   + G  +   
Sbjct: 355 YLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVN 414

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GA 305
             +++M  KG  P+ +  + LI+      ++E A  ++      G+    IS+++L+ G 
Sbjct: 415 ETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGF 474

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           C N  +   A  L++ +       T  T N LI A      +    ++  +M S G  P+
Sbjct: 475 CRNG-DLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPD 533

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
             TY +L+    +  +V+   + L++    G +P++  F
Sbjct: 534 LYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATF 572



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 163/393 (41%), Gaps = 23/393 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L   GR+ E + L+E M+     D+   Y+     +CK  K ++EA ++ + + N    P
Sbjct: 160 LCEGGRLEEAVALVESMDAYIAPDV-VTYNTLMRGLCKDSK-VQEAAQYLRRMMNQGCIP 217

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
              T+N ++         + A ++L+     G   D   Y +LI      G V+   E  
Sbjct: 218 DDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELF 277

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                 ++KPD VV+N+L+    + G +  A  V+ EM  +     PD  T   ++    
Sbjct: 278 NEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVED--GCHPDIWTYNIVINGLC 335

Query: 203 NAGQVDRAREVYKMIHKYNIKG-TPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIP 259
             G +  A  V   ++   +KG  P+V+T    I+   +    + A  + + M   G+ P
Sbjct: 336 KMGNISDAAVV---MNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAP 392

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D +  +++++    AGK +   E  +E   +G     I+Y+ L+         ++A  + 
Sbjct: 393 DAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVI 452

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M    L P   + N LI   C    L     +   +   G      T++IL+ A   K
Sbjct: 453 VRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSK 512

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            ++++   +  +    G  P+L  ++ ++ G C
Sbjct: 513 LNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSC 545



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 89/431 (20%), Positives = 181/431 (41%), Gaps = 61/431 (14%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P    +N +M    ++   + A +V   +  AG+  D + +T  I +   +G+       
Sbjct: 8   PAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVAL-- 65

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
                                 R    L E   +V P     +    +++     G    
Sbjct: 66  ----------------------RLLRSLPERGCDVKP-----LAYCTVVRGLYAHGHGYD 98

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           AR ++  + + ++      +   ++   Q GD   + ++   + K+G+  ++   +  I 
Sbjct: 99  ARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIR 158

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLK 328
                G++E A  ++ E+ +  I+  +++Y++LM G C ++K  Q+A +    M +    
Sbjct: 159 GLCEGGRLEEAVALV-ESMDAYIAPDVVTYNTLMRGLCKDSK-VQEAAQYLRRMMNQGCI 216

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P   T N +I   C  D L +  E+L D    G  P+ +TY  L+     + DVE  L L
Sbjct: 217 PDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALEL 276

Query: 389 LSQAKEDGVIPNLVMFKCII-GMCSRR--YEKARTLNEHVLSFNSGRPQIENKWT----- 440
            ++A+   + P+LV++  ++ G+C +       + +NE V   +   P I   WT     
Sbjct: 277 FNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMV--EDGCHPDI---WTYNIVI 331

Query: 441 ---------SLALMVYREAIVAGTIPTVEVVSKVLG--CLQLPYNADIRERLVENL---G 486
                    S A +V  +AIV G +P V   + ++   C +L  ++ +  +LVE +   G
Sbjct: 332 NGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSAL--QLVERMWMYG 389

Query: 487 VSADALKRSNL 497
           ++ DA+  +++
Sbjct: 390 IAPDAITYNSV 400


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/416 (23%), Positives = 183/416 (43%), Gaps = 40/416 (9%)

Query: 23  HDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H +    +SYN LI      G + E +DL  DME  G L+ D V          +   + 
Sbjct: 310 HGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHG-LEPDMV----------TYNILA 358

Query: 79  EAFRFFKLV--------------PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           + FR   L+              PNP L T+ +L+       + E A ++ + +   G +
Sbjct: 359 KGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQ 418

Query: 125 ADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDV 176
                 T L+ +  KS +VD  F+         ++PD + ++ LI    + G V +A  +
Sbjct: 419 LSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILL 478

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
             +M +  + + P+ +  GA++      G++ +AR  +  +   N+     +Y I I+  
Sbjct: 479 YEKMCS--NRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGY 536

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            + G+   A  +Y  + +KG+ P  V  ++L+       K+  A  +L   K  G+    
Sbjct: 537 IKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNA 596

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           ++Y++LM       N Q  LEL   MK+  + PT  T   +I  LC   +L ++ ++L D
Sbjct: 597 VTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLED 656

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           M ++GL P+ ++Y+ ++ A  +  D+     L  +     + P  V +  +I G C
Sbjct: 657 MDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFC 712



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 143/309 (46%), Gaps = 26/309 (8%)

Query: 130 YTTLITTCAKSGKVDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           + T+++   K G VD         +   + PD   +N LI     +G++  A D+  +M 
Sbjct: 284 FNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDM- 342

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCS--Q 238
            E H ++PD +T   L K     G ++ A   + +I K  IKG  P + T  +  C   Q
Sbjct: 343 -ENHGLEPDMVTYNILAKGFRLLGLINGA---WNIIQKMLIKGPNPNLVTYTVLICGHCQ 398

Query: 239 TGDWEFACSVYDDMTKKG----VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
            G+ E A  +Y +M   G    +I   V L +L      + +V+ AF++  E +  G+  
Sbjct: 399 IGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCK----SRQVDVAFKLFCEMEANGLRP 454

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
            +I+YS+L+         Q+A+ LYE M S ++ P      A++  LC+  ++ +     
Sbjct: 455 DLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYF 514

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-S 412
             + +  L  + I Y+I++    ++ +    + L  Q  E G+ P +V F  ++ G C +
Sbjct: 515 DYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCIN 574

Query: 413 RRYEKARTL 421
           R+  +AR L
Sbjct: 575 RKLSQARRL 583



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 157/341 (46%), Gaps = 13/341 (3%)

Query: 99  MSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK----P 152
           M  CA S+ +    A  VL  +++       + Y +L+     S  +  ++  +K    P
Sbjct: 184 MLACAYSRSAMVHDALFVLVKMKDLNFIVSIQTYNSLLYNLRHSNIMWDVYNEIKVSGTP 243

Query: 153 DRVVFNALIT--ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
                ++++    C QS   D    VL   + E     P  ++   +M      G VD A
Sbjct: 244 QSEYTSSIVVDGLCRQSRFQDA---VLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVA 300

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           +  + M+ K+ +      Y I I+     G    A  + +DM   G+ PD V  + L   
Sbjct: 301 KSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKG 360

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G +  A+ I+Q+   +G +  +++Y+ L+       N ++AL+LY+ M S   + +
Sbjct: 361 FRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLS 420

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           + +   L+ +LC   Q+    ++  +M++ GL P+ ITYS L+    ++ +V+  ++L  
Sbjct: 421 IISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYE 480

Query: 391 QAKEDGVIPN-LVMFKCIIGMCSR-RYEKARTLNEHVLSFN 429
           +   + +IPN L+    ++G+C + +  +AR   +++++ N
Sbjct: 481 KMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSN 521



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/391 (18%), Positives = 166/391 (42%), Gaps = 19/391 (4%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A+ +   L +Y+ LI    +QG + + I L E M    ++    ++ A    +C+  K I
Sbjct: 449 ANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGK-I 507

Query: 78  KEAFRFFKLVPNPTLST----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A  +F  +    LS     +N+++       ++  A ++ + + E G+      + +L
Sbjct: 508 SQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSL 567

Query: 134 ITTCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +     + K+     + + +K     P+ V +  L+    + G +    ++L+EM A+  
Sbjct: 568 MYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAK-- 625

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + P HIT   ++K      ++  + ++ + +    +      Y   I    +  D   A
Sbjct: 626 AIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKA 685

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +YD M    + P  V  + LI+     G ++ A  +L   +N+ +++   +Y++++ A
Sbjct: 686 FQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKA 745

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
                +  KA+  +  M     + ++   +A+I  LC    + +       M S G+CP+
Sbjct: 746 HCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPD 805

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDG 396
              + +LL A  +   +     LL++  + G
Sbjct: 806 QDLFEVLLNAFHQCGHLNSEFELLAEMIKSG 836


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 165/362 (45%), Gaps = 21/362 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN L+    R GR+ E   L+++M    +      Y   F  + ++ ++ +     F  
Sbjct: 88  TYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGES-RTMLSLFAE 146

Query: 85  KLVPNPTLSTFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            L     L  +    +L  +C   K ++ A QVL ++   GL     +Y TLI    +  
Sbjct: 147 SLKKGVMLGAYTCSILLNGLCKDGKVAK-AEQVLEMLVHTGLVPTTVIYNTLINGYCQVR 205

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            +   F         +++PD + +NALI    +   V +A D++ EM  E   VDP   T
Sbjct: 206 DLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM--EKSGVDPSVET 263

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+ A   AGQ+++   V   + +  IK     +   +    + G    A ++ DDM 
Sbjct: 264 FNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMI 323

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            K V P+    +++ID    +G  E AF ++++ KN G+S  I++Y+ L+     +    
Sbjct: 324 YKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQID 383

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A EL   +++  L+P V + N +I+A C+     K +E+L +M   G+ P   TY  L+
Sbjct: 384 EAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLV 443

Query: 374 VA 375
            A
Sbjct: 444 SA 445



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 167/366 (45%), Gaps = 18/366 (4%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           ++ L R G     + L  +  +KG++            +CK  K  K       LV    
Sbjct: 128 FDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGL 187

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----D 144
            PT   +N L++     +D  GAF +   ++   ++ D   Y  LI    K   V    D
Sbjct: 188 VPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAED 247

Query: 145 AMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            + E     V P    FN LI A G +G +++ F VL++M  +   +  D I+ G+++KA
Sbjct: 248 LVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQK--GIKSDVISFGSVVKA 305

Query: 201 CANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               G++  A  +   MI+K ++    +VY   I+   ++GD E A  + + M   GV  
Sbjct: 306 FCKNGKIPEAVAILDDMIYK-DVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSA 364

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
             V  + L+     + +++ A E++   +NQG+   ++SY++++ AC N  +  KALEL 
Sbjct: 365 SIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELL 424

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VAC 376
           + M    ++PT+ T + L++AL    ++     +   M    + P++  Y I++   V C
Sbjct: 425 QEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRC 484

Query: 377 ERKDDV 382
           E    V
Sbjct: 485 ENDSKV 490



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 123/257 (47%), Gaps = 2/257 (0%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P  V++N LI    Q   +  AF +  +M +    + PDHIT  AL+        V +A 
Sbjct: 189 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKS--RHIRPDHITYNALINGLCKLEMVTKAE 246

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           ++   + K  +  + E +   I+     G  E   +V  DM +KG+  D +   +++   
Sbjct: 247 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAF 306

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              GK+  A  IL +   + ++     Y+S++ A   + + ++A  L E MK+  +  ++
Sbjct: 307 CKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASI 366

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T N L+  LC   Q+ +  E++  +++ GL P+ ++Y+ ++ AC  K D +  L LL +
Sbjct: 367 VTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQE 426

Query: 392 AKEDGVIPNLVMFKCII 408
             + G+ P L  +  ++
Sbjct: 427 MNKYGIRPTLRTYHTLV 443



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 95/430 (22%), Positives = 190/430 (44%), Gaps = 28/430 (6%)

Query: 120 EAGLKADCKLYTTLITTCAKSGK-------VDAMFE-NVKPDRVVFNALITACGQSGAVD 171
           E     D   Y  +I    +SGK        D M +  V P+ + +N +I    + G ++
Sbjct: 9   EGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLE 68

Query: 172 RAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
             F +  +M   +H    P+ +T   L+     AG++D  R +   +  +++      Y+
Sbjct: 69  AGFRLRDQM---LHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYS 125

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
           I  +  ++TG+     S++ +  KKGV+      S L++     GKV  A ++L+   + 
Sbjct: 126 ILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHT 185

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G+    + Y++L+      ++ + A  ++E MKS  ++P   T NALI  LC  + + K 
Sbjct: 186 GLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKA 245

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 409
            +++ +M+  G+ P+  T++ L+ A      +E    +LS  ++ G+  +++ F  ++  
Sbjct: 246 EDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKA 305

Query: 410 MC--SRRYEKARTLNEHVLSFNSGRPQ---------IENKWTSLALMVYREAIVAGTIPT 458
            C   +  E    L++ +    +   Q         IE+  T  A ++  +   +G   +
Sbjct: 306 FCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSAS 365

Query: 459 VEVVSKVLGCLQLPYNADIRERLV---ENLGVSADALKRSNLCSLIDGFGEYDPRAFSLL 515
           +   + +L  L      D  E L+    N G+  D +  + + S     G+ D +A  LL
Sbjct: 366 IVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTD-KALELL 424

Query: 516 EEAASFGIVP 525
           +E   +GI P
Sbjct: 425 QEMNKYGIRP 434


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/409 (25%), Positives = 187/409 (45%), Gaps = 29/409 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKV--YHARFFNVCKSQKAIKEAFRFFK----- 85
           N L + GRI E  +L+++M RK    +  +  Y++    +CK Q    EA    +     
Sbjct: 159 NGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCK-QSMTAEACELMRSLRDG 217

Query: 86  -LVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            L  +P   TF+ L+  +C   +  E     +      G   +   Y  L+    K+ K+
Sbjct: 218 SLRVSPDTVTFSTLIDGLCKCGQTDEACNDDM---IAGGYVPNVVTYNALVNGLCKADKM 274

Query: 144 D---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +   AM E+     V PD + ++ L+ A  ++  VD A ++L  M +      P+ +T  
Sbjct: 275 ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMAS--RGCTPNVVTFN 332

Query: 196 ALMKACANAGQVDRAREVYKM-IHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDM 252
           +++     +   DR+ E +++ +  YN    P+   + I I    + G++E A +++++M
Sbjct: 333 SIIDGLCKS---DRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEM 389

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             K + PD +   ALID    AG+VEAA +IL    N G+   +++Y+ L+     +   
Sbjct: 390 VAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRI 449

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           ++  E  E M S    P   T  +L+ ALC   +    ++++S +KS G  P+T+TY+IL
Sbjct: 450 EEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNIL 509

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
           +    +    E  + +L +    G  P+   F    G   R    A T+
Sbjct: 510 VDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTM 558



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 163/344 (47%), Gaps = 14/344 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--- 146
           PT+ T+N +++    S +     ++   + + G   D   Y TLI +  K+G ++     
Sbjct: 79  PTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRL 138

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                     P+ V ++ LI    + G +D A +++ EM  +   V P+ IT  + +   
Sbjct: 139 HGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 198

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIP 259
                   A E+ + +   +++ +P+  T +  I+   + G  + AC+  DDM   G +P
Sbjct: 199 CKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACN--DDMIAGGYVP 256

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V  +AL++    A K+E A  +++   ++G++  +I+YS L+ A   A    +ALEL 
Sbjct: 257 NVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELL 316

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M S    P V T N++I  LC  D+  +  ++   + +  L P+ +T++IL+    + 
Sbjct: 317 HGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKA 376

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
            + E    L  +     + P+++ F  +I G+C + + E AR +
Sbjct: 377 GNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDI 420



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 176/426 (41%), Gaps = 64/426 (15%)

Query: 157 FNALITACGQSGAVDRAFDVL-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           +N ++ +  ++G   RA ++   EM  +   V P  +T   ++     + ++    E+++
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARD--GVAPTIVTYNTIINGLCKSNELGAGMELFE 105

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            + K         Y   I+   + GD E A  ++  M+ +G +P+ V  S LI+     G
Sbjct: 106 ELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVG 165

Query: 276 KVEAAFEILQEAKNQGISV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLK----- 328
           +++ A E++QE   +   V   II+Y+S +          +A EL   ++   L+     
Sbjct: 166 RIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDT 225

Query: 329 ------------------------------PTVSTMNALITALCDGDQLPKTMEVLSDMK 358
                                         P V T NAL+  LC  D++ +   ++  M 
Sbjct: 226 VTFSTLIDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMV 285

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYE 416
             G+ P+ ITYS+L+ A  +   V+  L LL      G  PN+V F  II G+C S R  
Sbjct: 286 DKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSG 345

Query: 417 KA---------RTLNEHVLSFN---SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 464
           +A         R L    ++FN   +G  +  N   + AL  + E +     P V     
Sbjct: 346 EAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASAL--FEEMVAKNMQPDVMTFGA 403

Query: 465 VLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEY-DPRAFSLLEEAA 519
           ++  L    Q+    DI + L+ NLGV  + +  + L   +   G   +P  F  LEE  
Sbjct: 404 LIDGLCKAGQVEAARDILD-LMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEF--LEEMV 460

Query: 520 SFGIVP 525
           S G VP
Sbjct: 461 SSGCVP 466



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 121/286 (42%), Gaps = 36/286 (12%)

Query: 274 AGKVEAAFEILQ-EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
           AG+   A EI + E    G++  I++Y++++     +      +EL+E +      P V 
Sbjct: 58  AGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVV 117

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGLMLL 389
           T N LI +LC    L +   +   M S G  PN +TYS+L   L    R D+    +  +
Sbjct: 118 TYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEM 177

Query: 390 SQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV-- 446
           ++   D V+PN++ +   + G+C +         E + S   G  ++     + + ++  
Sbjct: 178 TRKSCD-VLPNIITYNSFLDGLCKQSMTAEAC--ELMRSLRDGSLRVSPDTVTFSTLIDG 234

Query: 447 -----------YREAIVAGTIPTVEVVSKVLGCLQLPYNADIRER---LVENL---GVSA 489
                        + I  G +P V   + ++  L     AD  ER   ++E++   GV+ 
Sbjct: 235 LCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGL---CKADKMERAHAMIESMVDKGVTP 291

Query: 490 DALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP-CVSFKEI 532
           D +  S    L+D F +      A  LL   AS G  P  V+F  I
Sbjct: 292 DVITYS---VLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSI 334


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic; AltName: Full=Protein PROTON GRADIENT
            REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 144/293 (49%), Gaps = 10/293 (3%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
            P L T+N+L+     +   E A  V   V+  G   D   Y  L+    KSGK+D +FE 
Sbjct: 783  PKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFEL 842

Query: 150  VK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             K         + +  N +I+   ++G VD A D+  ++ ++     P   T G L+   
Sbjct: 843  YKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSD-RDFSPTACTYGPLIDGL 901

Query: 202  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            + +G++  A+++++ +  Y  +    +Y I IN   + G+ + AC+++  M K+GV PD 
Sbjct: 902  SKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDL 961

Query: 262  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
               S L+D     G+V+      +E K  G++  ++ Y+ ++     +   ++AL L+  
Sbjct: 962  KTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNE 1021

Query: 322  MKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            MK+ + + P + T N+LI  L     + +  ++ ++++  GL PN  T++ L+
Sbjct: 1022 MKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALI 1074



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 99/436 (22%), Positives = 184/436 (42%), Gaps = 62/436 (14%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC----KSQKAIKE 79
            L +Y+ L+    ++  I   + LL++ME  GL     VY    F +C         I E
Sbjct: 222 SLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGL--KPNVYT---FTICIRVLGRAGKINE 276

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A+   K + +    P + T+ +L+    +++  + A +V   ++    K D   Y TL+ 
Sbjct: 277 AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLD 336

Query: 136 TCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
             + +  +D++ +           PD V F  L+ A  ++G    AFD L  M  +   +
Sbjct: 337 RFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQ--GI 394

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P+  T   L+       ++D A E++  +    +K T   Y + I+   ++GD   A  
Sbjct: 395 LPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALE 454

Query: 248 VYDDMTKKGV-----------------------------------IPDEVFLSALIDFAG 272
            ++ M  KG+                                   +PD V  + ++    
Sbjct: 455 TFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYS 514

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
             G+++ A ++L E    G    +I  +SL+     A    +A +++  MK +KLKPTV 
Sbjct: 515 KVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVV 574

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N L+  L    ++ + +E+   M   G  PNTIT++ L     + D+V + L +L + 
Sbjct: 575 TYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM 634

Query: 393 KEDGVIPNLVMFKCII 408
            + G +P++  +  II
Sbjct: 635 MDMGCVPDVFTYNTII 650



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 168/390 (43%), Gaps = 22/390 (5%)

Query: 50  DMERKGLLDMDKVYHARFFNVCKSQKAIKEA------FRFFKLVPNPTLSTFNMLMSVCA 103
           D+ +K ++  D   +   F     +  +K+A       R F  V N    ++N L+ +  
Sbjct: 142 DLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAY--SYNGLIHLLL 199

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRV 155
            S+    A +V R +   G +   + Y++L+    K   +D++           +KP+  
Sbjct: 200 KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVY 259

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
            F   I   G++G ++ A+++L  M+ E     PD +T   L+ A   A ++D A+EV++
Sbjct: 260 TFTICIRVLGRAGKINEAYEILKRMDDE--GCGPDVVTYTVLIDALCTARKLDCAKEVFE 317

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            +     K     Y   ++  S   D +     + +M K G +PD V  + L+D    AG
Sbjct: 318 KMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAG 377

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
               AF+ L   ++QGI   + +Y++L+           ALEL+ +M+S+ +KPT  T  
Sbjct: 378 NFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYI 437

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
             I            +E    MK+ G+ PN +  +  L +  +         +    K+ 
Sbjct: 438 VFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDI 497

Query: 396 GVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
           G++P+ V +     M  + Y K   ++E +
Sbjct: 498 GLVPDSVTYN----MMMKCYSKVGEIDEAI 523



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/321 (22%), Positives = 145/321 (45%), Gaps = 11/321 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + TF +L+     + +   AF  L ++++ G+  +   Y TLI    +  ++D   E 
Sbjct: 361 PDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEL 420

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   VKP    +   I   G+SG    A +   +M  +   + P+ +   A + + 
Sbjct: 421 FGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTK--GIAPNIVACNASLYSL 478

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A AG+   A++++  +    +      Y + + C S+ G+ + A  +  +M + G  PD 
Sbjct: 479 AKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDV 538

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           + +++LI+    A +V+ A+++    K   +   +++Y++L+         Q+A+EL+E 
Sbjct: 539 IVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEG 598

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M      P   T N L   LC  D++   +++L  M  +G  P+  TY+ ++    +   
Sbjct: 599 MVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQ 658

Query: 382 VEVGLMLLSQAKEDGVIPNLV 402
           V+  +    Q K+  V P+ V
Sbjct: 659 VKEAMCFFHQMKK-LVYPDFV 678



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 141/329 (42%), Gaps = 30/329 (9%)

Query: 150  VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
            V+P    +N LI    ++  ++ A DV  ++ +      PD  T   L+ A   +G++D 
Sbjct: 781  VQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST--GCIPDVATYNFLLDAYGKSGKIDE 838

Query: 210  AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD-MTKKGVIPDEVFLSALI 268
              E+YK +  +  +     + I I+   + G+ + A  +Y D M+ +   P       LI
Sbjct: 839  LFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLI 898

Query: 269  DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
            D    +G++  A ++ +   + G       Y+ L+     A     A  L++ M    ++
Sbjct: 899  DGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVR 958

Query: 329  PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
            P + T + L+  LC   ++ + +    ++K  GL P+ + Y++++    +   +E  L+L
Sbjct: 959  PDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVL 1018

Query: 389  LSQAKED-GVIPNLVMFKCII---GMCSRRYEKARTLNE--------HVLSFN------- 429
             ++ K   G+ P+L  +  +I   G+     E  +  NE        +V +FN       
Sbjct: 1019 FNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYS 1078

Query: 430  -SGRPQIENKWTSLALMVYREAIVAGTIP 457
             SG+P+        A  VY+  +  G  P
Sbjct: 1079 LSGKPE-------HAYAVYQTMVTGGFSP 1100



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 168/391 (42%), Gaps = 27/391 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS--QKAIKEAFRFFK---LVPNPT 91
           + G     ++  E M+ KG+       +A  +++ K+   +  K+ F   K   LVP+  
Sbjct: 445 KSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSV 504

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
             T+NM+M   +   + + A ++L  + E G + D  +  +LI T  K+ +VD  ++   
Sbjct: 505 --TYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFM 562

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 +KP  V +N L+   G++G +  A ++   M  +  P  P+ IT   L      
Sbjct: 563 RMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCP--PNTITFNTLFDCLCK 620

Query: 204 AGQVDRA-REVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             +V  A + ++KM+   ++   P+V+T    I    + G  + A   +  M KK V PD
Sbjct: 621 NDEVTLALKMLFKMM---DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM-KKLVYPD 676

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
            V L  L+     A  +E A++I+     N       + +  L+G+         A+   
Sbjct: 677 FVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFS 736

Query: 320 EHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDM-KSLGLCPNTITYSILLVACE 377
           E + +  + +   S +  +I   C  + +     +     K LG+ P   TY++L+    
Sbjct: 737 ERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLL 796

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             D +E+   +  Q K  G IP++  +  ++
Sbjct: 797 EADMIEIAQDVFLQVKSTGCIPDVATYNFLL 827



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 143/331 (43%), Gaps = 21/331 (6%)

Query: 25   VSEQLHSYNRLIRQGRISECIDLLEDM----ERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
            V  +L +YN LI     ++ I++ +D+    +  G +     Y+       KS K I E 
Sbjct: 781  VQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGK-IDEL 839

Query: 81   FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLIT 135
            F  +K +          T N+++S    + + + A  +   L+ +         Y  LI 
Sbjct: 840  FELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLID 899

Query: 136  TCAKSGKV---DAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              +KSG++     +FE +     +P+  ++N LI   G++G  D A  +   M  E   V
Sbjct: 900  GLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKE--GV 957

Query: 188  DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
             PD  T   L+      G+VD     +K + +  +      Y + IN   ++   E A  
Sbjct: 958  RPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALV 1017

Query: 248  VYDDM-TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            ++++M T +G+ PD    ++LI   G AG VE A +I  E +  G+   + ++++L+   
Sbjct: 1018 LFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGY 1077

Query: 307  SNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
            S +   + A  +Y+ M +    P   T   L
Sbjct: 1078 SLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 177/382 (46%), Gaps = 28/382 (7%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPNPTL----STFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           + +CK+ + +KEA +   ++    L    +T+  ++  CA  +  E    V + + E GL
Sbjct: 51  WRLCKAGR-LKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGL 109

Query: 124 KADCKLYTTLITTCAKSG---KVDAMFENVK-PDRVVFNALITACGQSGAVDRAFDVLAE 179
             D  L  +LI   +K G    V+ +F  +   D V ++++I A   +    +AFD    
Sbjct: 110 AIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFER 169

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
           M      ++P+ IT  +++KAC N   +++ARE++ ++    ++    V T  I   S+ 
Sbjct: 170 MKDA--NIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKC 227

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G+   AC ++  M ++ V+      +A+I       K+  AFE+ ++    GIS   +++
Sbjct: 228 GEISLACEIFQKMKERNVVS----WTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTF 283

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
            SL+ +C+  +   +   ++ H+    L+  V   NALIT  C  + +    E    M  
Sbjct: 284 VSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSK 343

Query: 360 LGLCPNTITYSILLV-----ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
                + I++S ++        + K+ ++    LL + + +GV PN V F  I+  CS  
Sbjct: 344 ----RDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVH 399

Query: 415 --YEKARTLNEHV--LSFNSGR 432
              E+ R ++  +  + F S R
Sbjct: 400 GALEQGRQIHAEISKVGFESDR 421



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 158/356 (44%), Gaps = 27/356 (7%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP------NPTLST 94
           + E   LLE M R+G+   +KV        C    A+++  +    +       + +L T
Sbjct: 367 LDEVFQLLERMRREGVFP-NKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQT 425

Query: 95  --FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP 152
             FNM  + C S  ++E   QV   ++   + A   L T  I  C      + +F  +  
Sbjct: 426 AIFNMY-AKCGSIYEAE---QVFSKMENKNVVAWASLLTMYIK-CGDLTSAEKVFSEMST 480

Query: 153 DRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
             VV +N +I    QSG + + F++L+ M  E     PD +TI ++++AC     ++R +
Sbjct: 481 RNVVSWNLMIAGYAQSGDIAKVFELLSSMKVE--GFQPDRVTIISILEACGALSALERGK 538

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            V+    K  ++    V T  I   S+ G+   A +V+D ++ +    D V  +A++   
Sbjct: 539 LVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNR----DTVAWNAMLAGY 594

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS-IKLKPT 330
           G  G    A ++ +    + +    I++++++ AC  A   Q+  E++  M+   ++KP 
Sbjct: 595 GQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPG 654

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVG 385
                 ++  L    +L +  E +  M     C P+   +  LL AC+  D+V++ 
Sbjct: 655 KQHYGCMVDLLGRAGRLQEAEEFIQRMP----CEPDISVWHALLGACKSHDNVQLA 706



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/402 (20%), Positives = 169/402 (42%), Gaps = 65/402 (16%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLST 94
           G IS   ++ + M+ + ++    +  A         + + EAF  ++ +     +P   T
Sbjct: 228 GEISLACEIFQKMKERNVVSWTAIIQAN-----AQHRKLNEAFELYEKMLQAGISPNAVT 282

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV---- 150
           F  L++ C + +      ++   + E GL+ D  +   LIT   K   +    E      
Sbjct: 283 FVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMS 342

Query: 151 KPDRVVFNALITACGQSG-----AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           K D + ++A+I    QSG     ++D  F +L  M  E   V P+ +T  +++KAC+  G
Sbjct: 343 KRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRRE--GVFPNKVTFMSILKACSVHG 400

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +++ R+++                                    +++K G   D    +
Sbjct: 401 ALEQGRQIHA-----------------------------------EISKVGFESDRSLQT 425

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           A+ +     G +  A ++  + +N+ +    ++++SL+       +   A +++  M + 
Sbjct: 426 AIFNMYAKCGSIYEAEQVFSKMENKNV----VAWASLLTMYIKCGDLTSAEKVFSEMST- 480

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
                V + N +I        + K  E+LS MK  G  P+ +T   +L AC     +E G
Sbjct: 481 ---RNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERG 537

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNEHV 425
            ++ ++A + G+  + V+   +IGM S+  E  +ART+ + +
Sbjct: 538 KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKI 579



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 15/222 (6%)

Query: 57  LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116
           L+ D V       +      + EA   F  + N     +N +++          A  + +
Sbjct: 549 LESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFK 608

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---------NVKPDRVVFNALITACGQS 167
            + +  +  +   +T +I+ C ++G V    E          +KP +  +  ++   G++
Sbjct: 609 RMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRA 668

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
           G +  A + +  M     P +PD     AL+ AC +   V  A      I +        
Sbjct: 669 GRLQEAEEFIQRM-----PCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLE-PSNAS 722

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           VY    N  +Q G W+ +  V   M  KG+  D    S  ID
Sbjct: 723 VYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEID 764


>gi|298709629|emb|CBJ31438.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 762

 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 106/454 (23%), Positives = 192/454 (42%), Gaps = 65/454 (14%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA------IKEAFRFFKLVPNP 90
           R G     + LL++M    +      Y A   +  ++++       I E    + +VP+ 
Sbjct: 233 RAGDWKASLKLLDEMRAVAITPESGCYKAAMQSCVRNKQWERATSLIDEMTLTYGMVPD- 291

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------V 143
            L T+ + +S    +     A ++LR +++ GL+ D K Y+ +IT   K+ K       +
Sbjct: 292 -LETYQVAISAAGCASLWPKATKMLRQMRQNGLQPDPKTYSAVITASGKAKKWEESLRLL 350

Query: 144 DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M E  V+P+   FNA I +CG +    RA  +L EM      ++    +  A + ACA
Sbjct: 351 DDMREVGVEPNCHNFNAAIASCGVARQWQRAVGLLGEMKG--GGLELGLSSYNAAILACA 408

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            + +   A  +   +    ++     Y   I  C + G WE +     +MT +G+ P+  
Sbjct: 409 TSARGVEASALLGEMRAAGVEPNAATYLPVITACGKAGMWEQSLVHLREMTAQGLAPNSP 468

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII------------------------- 297
             +A+I   GHA + E A EIL E    G+   +                          
Sbjct: 469 IYTAVITACGHAKEWEKALEILAEMPAAGVKASVYHYNTALDACDRAAQGEAAVVLLHDM 528

Query: 298 -----------SYSSLMGACSNAKNWQKALELYEHMKSI-----KLKPT----VSTMNAL 337
                      SY S M AC +      ALEL E +K+      +L P+     S + A 
Sbjct: 529 DGPPGVSPNPSSYQSAMSACGSEGRVDLALELLEEVKAASTTRPELAPSSKLYASALQAC 588

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           +++  DG    K  E+L + +  G+  N  +Y+  ++A  +  +V+  L  L++ K+ G+
Sbjct: 589 VSSPPDGSNARKAKELLEEARGAGIALNWRSYNCAIIAAAKAGEVDEALARLAEMKDAGL 648

Query: 398 IPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFN 429
            PN++ +  I+   + R  +E++  L E +  + 
Sbjct: 649 TPNVMSYSWILPALASRELWEESLALVEEIKGYG 682



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/450 (23%), Positives = 193/450 (42%), Gaps = 66/450 (14%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-----LV 87
           +R+ +  R  E +D+L+ M  +G L  +    +     C S+K  +EA    +     L 
Sbjct: 39  SRMAKARRWEEALDILQRMRARG-LQPNSYCVSSAIKACGSKKRWREALELLERRREDLG 97

Query: 88  PNPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---K 142
               +  +++  ++  C +S ++    ++L  ++  G       YT  I+ C  SG   K
Sbjct: 98  EGSPVDEYSLSAAIYACGNSGETGKVLELLEELKVGGKTPHPFSYTAAISACGDSGMGDK 157

Query: 143 VDAMFENVKPDRVVFNAL---------ITACGQSGAVDRAFDVLAEMNAEVHPVDPD--- 190
           V  +FE+++  RV  +           ITA  +SG   +A  +  EM  +  P + D   
Sbjct: 158 VMQLFEDMRQARVRTDGFIDVYCVKTTITALAKSGKWKQALKIYLEM-LDALPANSDAPE 216

Query: 191 -HITIGALMKACANAGQVDRAREVYKMIHKYN-IKGTPE--VYTIAINCCSQTGDWEFAC 246
            ++ + AL  A    G+    +   K++ +   +  TPE   Y  A+  C +   WE A 
Sbjct: 217 ANLNLDALRDASLACGRAGDWKASLKLLDEMRAVAITPESGCYKAAMQSCVRNKQWERAT 276

Query: 247 SVYDDMT------------------------------------KKGVIPDEVFLSALIDF 270
           S+ D+MT                                    + G+ PD    SA+I  
Sbjct: 277 SLIDEMTLTYGMVPDLETYQVAISAAGCASLWPKATKMLRQMRQNGLQPDPKTYSAVITA 336

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
           +G A K E +  +L + +  G+     ++++ + +C  A+ WQ+A+ L   MK   L+  
Sbjct: 337 SGKAKKWEESLRLLDDMREVGVEPNCHNFNAAIASCGVARQWQRAVGLLGEMKGGGLELG 396

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           +S+ NA I A     +  +   +L +M++ G+ PN  TY  ++ AC +    E  L+ L 
Sbjct: 397 LSSYNAAILACATSARGVEASALLGEMRAAGVEPNAATYLPVITACGKAGMWEQSLVHLR 456

Query: 391 QAKEDGVIPNLVMFKCIIGMC--SRRYEKA 418
           +    G+ PN  ++  +I  C  ++ +EKA
Sbjct: 457 EMTAQGLAPNSPIYTAVITACGHAKEWEKA 486



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 178/395 (45%), Gaps = 27/395 (6%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPTLSTFNMLMSVC 102
           +L  M + GL    K Y A      K++K  +E+ R      ++   P    FN  ++ C
Sbjct: 314 MLRQMRQNGLQPDPKTYSAVITASGKAKK-WEESLRLLDDMREVGVEPNCHNFNAAIASC 372

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDA-------MFENVKPDR 154
             ++  + A  +L  ++  GL+     Y   I  CA S + V+A           V+P+ 
Sbjct: 373 GVARQWQRAVGLLGEMKGGGLELGLSSYNAAILACATSARGVEASALLGEMRAAGVEPNA 432

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
             +  +ITACG++G  +++   L EM A+   + P+     A++ AC +A + ++A E+ 
Sbjct: 433 ATYLPVITACGKAGMWEQSLVHLREMTAQ--GLAPNSPIYTAVITACGHAKEWEKALEIL 490

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT-KKGVIPDEVFLSALIDFAGH 273
             +    +K +   Y  A++ C +    E A  +  DM    GV P+     + +   G 
Sbjct: 491 AEMPAAGVKASVYHYNTALDACDRAAQGEAAVVLLHDMDGPPGVSPNPSSYQSAMSACGS 550

Query: 274 AGKVEAAFEILQEAKNQGISVGIIS-----YSSLMGAC----SNAKNWQKALELYEHMKS 324
            G+V+ A E+L+E K    +   ++     Y+S + AC     +  N +KA EL E  + 
Sbjct: 551 EGRVDLALELLEEVKAASTTRPELAPSSKLYASALQACVSSPPDGSNARKAKELLEEARG 610

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             +     + N  I A     ++ + +  L++MK  GL PN ++YS +L A   ++  E 
Sbjct: 611 AGIALNWRSYNCAIIAAAKAGEVDEALARLAEMKDAGLTPNVMSYSWILPALASRELWEE 670

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEK 417
            L L+ + K  G++     +  ++   S   R+E+
Sbjct: 671 SLALVEEIKGYGLLRTPFAYSVVVAAHSAAGRWEE 705



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 186/418 (44%), Gaps = 28/418 (6%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           + P+   + A + +C ++   +RA  ++ EM    + + PD  T    + A   A    +
Sbjct: 252 ITPESGCYKAAMQSCVRNKQWERATSLIDEMTL-TYGMVPDLETYQVAISAAGCASLWPK 310

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A ++ + + +  ++  P+ Y+  I    +   WE +  + DDM + GV P+    +A I 
Sbjct: 311 ATKMLRQMRQNGLQPDPKTYSAVITASGKAKKWEESLRLLDDMREVGVEPNCHNFNAAIA 370

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
             G A + + A  +L E K  G+ +G+ SY++ + AC+ +    +A  L   M++  ++P
Sbjct: 371 SCGVARQWQRAVGLLGEMKGGGLELGLSSYNAAILACATSARGVEASALLGEMRAAGVEP 430

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
             +T   +ITA        +++  L +M + GL PN+  Y+ ++ AC    + E  L +L
Sbjct: 431 NAATYLPVITACGKAGMWEQSLVHLREMTAQGLAPNSPIYTAVITACGHAKEWEKALEIL 490

Query: 390 SQAKEDGVIPNLVMFKCIIGMCSRRYE-KARTLNEHVLSFNSGRPQIENKWTS------- 441
           ++    GV  ++  +   +  C R  + +A  +  H +    G     + + S       
Sbjct: 491 AEMPAAGVKASVYHYNTALDACDRAAQGEAAVVLLHDMDGPPGVSPNPSSYQSAMSACGS 550

Query: 442 -----LALMVYREAIVAGTI-----PTVEVVSKVL-GCLQLP---YNADIRERLVENLGV 487
                LAL +  E   A T      P+ ++ +  L  C+  P    NA   + L+E    
Sbjct: 551 EGRVDLALELLEEVKAASTTRPELAPSSKLYASALQACVSSPPDGSNARKAKELLEEARG 610

Query: 488 SADALK-RSNLCSLIDG--FGEYDPRAFSLLEEAASFGIVPCV-SFKEIPVVVDARKL 541
           +  AL  RS  C++I     GE D  A + L E    G+ P V S+  I   + +R+L
Sbjct: 611 AGIALNWRSYNCAIIAAAKAGEVD-EALARLAEMKDAGLTPNVMSYSWILPALASREL 667



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 143/322 (44%), Gaps = 51/322 (15%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF---- 147
           LS++N  +  CA+S     A  +L  ++ AG++ +   Y  +IT C K+G  +       
Sbjct: 397 LSSYNAAILACATSARGVEASALLGEMRAAGVEPNAATYLPVITACGKAGMWEQSLVHLR 456

Query: 148 ----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------------- 183
               + + P+  ++ A+ITACG +   ++A ++LAEM A                     
Sbjct: 457 EMTAQGLAPNSPIYTAVITACGHAKEWEKALEILAEMPAAGVKASVYHYNTALDACDRAA 516

Query: 184 --------VHPVD------PDHITIGALMKACANAGQVDRAREVYKMIH-----KYNIKG 224
                   +H +D      P+  +  + M AC + G+VD A E+ + +      +  +  
Sbjct: 517 QGEAAVVLLHDMDGPPGVSPNPSSYQSAMSACGSEGRVDLALELLEEVKAASTTRPELAP 576

Query: 225 TPEVYTIAINCCSQT----GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
           + ++Y  A+  C  +     +   A  + ++    G+  +    +  I  A  AG+V+ A
Sbjct: 577 SSKLYASALQACVSSPPDGSNARKAKELLEEARGAGIALNWRSYNCAIIAAAKAGEVDEA 636

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
              L E K+ G++  ++SYS ++ A ++ + W+++L L E +K   L  T    + ++ A
Sbjct: 637 LARLAEMKDAGLTPNVMSYSWILPALASRELWEESLALVEEIKGYGLLRTPFAYSVVVAA 696

Query: 341 LCDGDQLPKTMEVLSDMKSLGL 362
                +  +   VL DM + G+
Sbjct: 697 HSAAGRWEEVCGVLEDMIAAGV 718



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/276 (22%), Positives = 117/276 (42%), Gaps = 26/276 (9%)

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTI--AI 233
           +AE  ++  P +   IT        +   +  R  E   ++ +   +G  P  Y +  AI
Sbjct: 15  IAEEASDAQPSE-SRITTFMYASCISRMAKARRWEEALDILQRMRARGLQPNSYCVSSAI 73

Query: 234 NCCSQTGDWEFACSVYDDMTK---KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             C     W  A  + +   +   +G   DE  LSA I   G++G+     E+L+E K  
Sbjct: 74  KACGSKKRWREALELLERRREDLGEGSPVDEYSLSAAIYACGNSGETGKVLELLEELKVG 133

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP----TVSTMNALITALCDGDQ 346
           G +    SY++ + AC ++    K ++L+E M+  +++      V  +   ITAL    +
Sbjct: 134 GKTPHPFSYTAAISACGDSGMGDKVMQLFEDMRQARVRTDGFIDVYCVKTTITALAKSGK 193

Query: 347 LPKTMEVL----------SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
             + +++           SD     L  + +  + L  AC R  D +  L LL + +   
Sbjct: 194 WKQALKIYLEMLDALPANSDAPEANLNLDALRDASL--ACGRAGDWKASLKLLDEMRAVA 251

Query: 397 VIPNLVMFKCIIGMCSR--RYEKARTL-NEHVLSFN 429
           + P    +K  +  C R  ++E+A +L +E  L++ 
Sbjct: 252 ITPESGCYKAAMQSCVRNKQWERATSLIDEMTLTYG 287


>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 884

 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 187/412 (45%), Gaps = 33/412 (8%)

Query: 38  QGRISECIDLLEDMERKGLLD--------MDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89
           +G + E   + E ++  GL          M   + AR  +VC++   + E  R   + P+
Sbjct: 361 EGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKAR--DVCQAN-MLYEEMRDKGIAPD 417

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
              +TFN+L++          ++++ R    + L  DC LY   +     +G++D     
Sbjct: 418 G--ATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQF 475

Query: 146 ---MFENVKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
              M E   P  VV FN++I A  ++G  D A      M   +  + P   T  +++   
Sbjct: 476 LEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIM--LMFGLVPSSSTCSSMLLGL 533

Query: 202 ANAGQVDRAREV-YKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +  G++  AR++ YKMI K    G P     +T+ ++   + GD   A S++ +M  +G+
Sbjct: 534 SKKGRLQEARDLLYKMIDK----GLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGI 589

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD +  SA ID    AG VE A+E   E   +G       Y+SL+    N     +AL+
Sbjct: 590 CPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALK 649

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L   M+   L P + T N +I   C   ++    +  ++M  +G+ P+T+TY+ L+    
Sbjct: 650 LEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYC 709

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMC-SRRYEKARTLNEHVLS 427
           +  D+      L++    G  P++  +   I G C S++  +A T+ + +++
Sbjct: 710 KVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIA 761



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 175/380 (46%), Gaps = 20/380 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-----KLVPNPT 91
           + G+ ++  +L  D     L+    +Y      +C + + + EA +F      K +P P+
Sbjct: 430 KYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQ-LDEAMQFLEDMLEKGMP-PS 487

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMF 147
           +  FN +++  + +   + A +  +++   GL       ++++   +K G++    D ++
Sbjct: 488 VVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLY 547

Query: 148 ENVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           + +      ++V F  L+    + G    A  +  EM  E   + PD I   A +   + 
Sbjct: 548 KMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEM--EARGICPDAIAFSAFIDGLSK 605

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           AG V+ A E +  + K        VY   I+     G    A  +  +M +KG++PD   
Sbjct: 606 AGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFT 665

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + +I+     G++++AF+   E  + G++   ++Y++L+G      +   A E    M 
Sbjct: 666 TNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMY 725

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDV 382
           +    P ++T N  I   C   ++ + + +L ++ ++G+ PNT+TY+ ++ A C   D +
Sbjct: 726 ASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMMNAVC--TDML 783

Query: 383 EVGLMLLSQAKEDGVIPNLV 402
           +  ++L ++  +   +PN+V
Sbjct: 784 DRAMVLTAKLLKMAFVPNVV 803



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 165/357 (46%), Gaps = 28/357 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFR---FFKLV 87
           L   G++ E +  LEDM  KG+    +  + V  A  ++    +    +A++    F LV
Sbjct: 463 LCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAA--YSRAGFEDNAHKAYKIMLMFGLV 520

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI--------TTCAK 139
           P+ +  + +ML+ +    +  E    + +++ + GL  +   +T L+        T  A 
Sbjct: 521 PSSSTCS-SMLLGLSKKGRLQEARDLLYKMI-DKGLPVNKVAFTVLLDGYFKVGDTAGAH 578

Query: 140 SGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           S   +     + PD + F+A I    ++G V+ A++  +EM+ +     P++    +L+ 
Sbjct: 579 SLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKK--GFVPNNFVYNSLIH 636

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGV 257
              N G++  A ++ + + +  +   P+++T  I IN   + G  + A   + +M   GV
Sbjct: 637 GLCNCGKLHEALKLEREMRQKGL--LPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGV 694

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS-SLMGACSNAKNWQKAL 316
            PD V  + LI        + +A E L +    G    I +Y+  + G CS+ K   +A+
Sbjct: 695 TPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKI-SRAV 753

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            + + + ++ + P   T N ++ A+C  D L + M + + +  +   PN +T ++LL
Sbjct: 754 TMLDELIAVGVVPNTVTYNTMMNAVCT-DMLDRAMVLTAKLLKMAFVPNVVTTNVLL 809



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/427 (20%), Positives = 167/427 (39%), Gaps = 49/427 (11%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-KSQKAIKEAFRFF--KLVP 88
           +  L+R G       LL  M R G    +  ++      C K    + E+  F   K   
Sbjct: 250 FRLLLRVGDYGSVWKLLRGMIRDGPRPCNHNFNIMILCFCQKGYLRVAESLLFVMPKFCC 309

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DA 145
            P +  +N+L++       +  A   L L+ + G K     ++T+IT     G V     
Sbjct: 310 EPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARK 369

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +FE ++     P+  ++N L++   ++  V +A  +  EM  +   + PD  T   L+  
Sbjct: 370 IFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDK--GIAPDGATFNILVAG 427

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G+   + E+++     ++     +Y +++      G  + A    +DM +KG+ P 
Sbjct: 428 NYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPS 487

Query: 261 EVFLSALI---------DFAGHAGKVEAAFEI-------------------LQEAK---- 288
            V  +++I         D A  A K+   F +                   LQEA+    
Sbjct: 488 VVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLY 547

Query: 289 ---NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
              ++G+ V  ++++ L+       +   A  L+  M++  + P     +A I  L    
Sbjct: 548 KMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAG 607

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
            + +  E  S+M   G  PN   Y+ L+        +   L L  + ++ G++P++    
Sbjct: 608 LVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTN 667

Query: 406 CII-GMC 411
            II G C
Sbjct: 668 IIINGFC 674



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 78/190 (41%), Gaps = 2/190 (1%)

Query: 226 PEVY--TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
           P+VY   I IN     G    A      M K G  P  +  S +I    + G V  A +I
Sbjct: 311 PDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKI 370

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
            +  +  G+S  +  Y++LM     A++  +A  LYE M+   + P  +T N L+     
Sbjct: 371 FEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYK 430

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
             +   + E+  D     L P+   Y + +        ++  +  L    E G+ P++V 
Sbjct: 431 YGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVA 490

Query: 404 FKCIIGMCSR 413
           F  +I   SR
Sbjct: 491 FNSVIAAYSR 500



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/238 (18%), Positives = 94/238 (39%)

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
           R+  ++  M A  H  + D   +  LM+   N+     + E+   + +  ++ +    +I
Sbjct: 189 RSAHLVEFMWANHHKYESDFSILNTLMRGFMNSEMAYESLEILSRMREVGVRPSSSAISI 248

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
                 + GD+     +   M + G  P     + +I      G +  A  +L       
Sbjct: 249 LFRLLLRVGDYGSVWKLLRGMIRDGPRPCNHNFNIMILCFCQKGYLRVAESLLFVMPKFC 308

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
               + +Y+ L+ A         AL     M     KP++ T + +ITA C+   + +  
Sbjct: 309 CEPDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEAR 368

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           ++   ++ +GL PN   Y+ L+    +  DV    ML  + ++ G+ P+   F  ++ 
Sbjct: 369 KIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVA 426


>gi|168025874|ref|XP_001765458.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683308|gb|EDQ69719.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 670

 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 149/337 (44%), Gaps = 12/337 (3%)

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           AFR   + PN  + T   L++     +    A ++ R +++AG++     +  L+  C +
Sbjct: 207 AFRSAGVEPNAYVCT--TLIAALGCGRRLSQALKLFRWMEKAGIERPIFTFNALMVACGR 264

Query: 140 SGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
               D    +FE ++     PDR+ F  L++A   +G  DRA   +  M A    +    
Sbjct: 265 CASGDTAVELFEEMEKLGIVPDRITFTGLVSATTAAGLWDRAQSFIDMMQARGFSIGLHE 324

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
                +  ACA A +   A  +++++ +   +   E Y   +    +T  WE A   +  
Sbjct: 325 YI--EMQWACARARKPREAYGLFQVMLEQGYELKLESYNALLCAYERTAQWEDAMRTFIW 382

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           +  KG+ PD +  S+LI    +AG+ E A E+L+  K       ++S+  L+ A     N
Sbjct: 383 IQDKGLTPDVMSWSSLISACANAGQAERALEVLERMKTSDCQPNVVSWCGLLKAYQKTGN 442

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           W+KA E++  M      P      +L++A   G Q  K +  +  ++ LG+  + + +S 
Sbjct: 443 WEKAEEIFHAMLDSGCPPNEVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLDVVAWST 502

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            + A  +    E+      Q  + G +PN+V +  +I
Sbjct: 503 TISALAKAGQWELAEEKFKQMTKSGCLPNIVTYSSLI 539



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 146/325 (44%), Gaps = 10/325 (3%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC------AKSGKVDA 145
           + + N+++      ++   A +V R  + AG++ +  + TTLI         +++ K+  
Sbjct: 182 VRSMNVVVWQLGQMQNWYAATKVFRAFRSAGVEPNAYVCTTLIAALGCGRRLSQALKLFR 241

Query: 146 MFENVKPDRVVF--NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
             E    +R +F  NAL+ ACG+  + D A ++  EM  E   + PD IT   L+ A   
Sbjct: 242 WMEKAGIERPIFTFNALMVACGRCASGDTAVELFEEM--EKLGIVPDRITFTGLVSATTA 299

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           AG  DRA+    M+           Y      C++      A  ++  M ++G       
Sbjct: 300 AGLWDRAQSFIDMMQARGFSIGLHEYIEMQWACARARKPREAYGLFQVMLEQGYELKLES 359

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +AL+       + E A       +++G++  ++S+SSL+ AC+NA   ++ALE+ E MK
Sbjct: 360 YNALLCAYERTAQWEDAMRTFIWIQDKGLTPDVMSWSSLISACANAGQAERALEVLERMK 419

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           +   +P V +   L+ A        K  E+   M   G  PN + +  LL A E+    +
Sbjct: 420 TSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLDSGCPPNEVAWCSLLSAYEKGRQWK 479

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
             L  + + +E G+  ++V +   I
Sbjct: 480 KVLYTIEKLEELGMKLDVVAWSTTI 504



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 163/384 (42%), Gaps = 14/384 (3%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNV--CKSQKAIKEAFRFF-KLVPNPTLSTFN 96
           R+S+ + L   ME+ G+      ++A       C S     E F    KL   P   TF 
Sbjct: 232 RLSQALKLFRWMEKAGIERPIFTFNALMVACGRCASGDTAVELFEEMEKLGIVPDRITFT 291

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-------GKVDAMFEN 149
            L+S   ++   + A   + ++Q  G       Y  +   CA++       G    M E 
Sbjct: 292 GLVSATTAAGLWDRAQSFIDMMQARGFSIGLHEYIEMQWACARARKPREAYGLFQVMLEQ 351

Query: 150 VKPDRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
               ++  +NAL+ A  ++   + A      +  +   + PD ++  +L+ ACANAGQ +
Sbjct: 352 GYELKLESYNALLCAYERTAQWEDAMRTFIWIQDK--GLTPDVMSWSSLISACANAGQAE 409

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
           RA EV + +   + +     +   +    +TG+WE A  ++  M   G  P+EV   +L+
Sbjct: 410 RALEVLERMKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFHAMLDSGCPPNEVAWCSLL 469

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                  + +     +++ +  G+ + ++++S+ + A + A  W+ A E ++ M      
Sbjct: 470 SAYEKGRQWKKVLYTIEKLEELGMKLDVVAWSTTISALAKAGQWELAEEKFKQMTKSGCL 529

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE-VGLM 387
           P + T ++LI A  D     K   V   M  +G+ PN      LL A  +  ++E V + 
Sbjct: 530 PNIVTYSSLIKAYGDVGLWEKAESVFKLMLRVGIRPNPQACCALLRAYGKGKELEKVIIF 589

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMC 411
             S   + GV P+   +  I   C
Sbjct: 590 FESMEPQYGVEPDKYAYAAIFWAC 613



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/340 (20%), Positives = 135/340 (39%), Gaps = 50/340 (14%)

Query: 71  CKSQKAIKEAFRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           C   +  +EA+  F+++        L ++N L+     +   E A +    +Q+ GL  D
Sbjct: 332 CARARKPREAYGLFQVMLEQGYELKLESYNALLCAYERTAQWEDAMRTFIWIQDKGLTPD 391

Query: 127 CKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLA 178
              +++LI+ CA +G+ +   E        + +P+ V +  L+ A  ++G  ++A ++  
Sbjct: 392 VMSWSSLISACANAGQAERALEVLERMKTSDCQPNVVSWCGLLKAYQKTGNWEKAEEIFH 451

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
            M     P  P+ +   +L+ A     Q  +     + + +  +K     ++  I+  ++
Sbjct: 452 AMLDSGCP--PNEVAWCSLLSAYEKGRQWKKVLYTIEKLEELGMKLDVVAWSTTISALAK 509

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG---KVEAAFEILQEA-------- 287
            G WE A   +  MTK G +P+ V  S+LI   G  G   K E+ F+++           
Sbjct: 510 AGQWELAEEKFKQMTKSGCLPNIVTYSSLIKAYGDVGLWEKAESVFKLMLRVGIRPNPQA 569

Query: 288 -------------------------KNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
                                       G+     +Y+++  AC     WQ+A++  + M
Sbjct: 570 CCALLRAYGKGKELEKVIIFFESMEPQYGVEPDKYAYAAIFWACWTCGEWQRAVKYIDRM 629

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +     P       LI       Q+ K M+VL  M S  L
Sbjct: 630 EMAGCTPDSVIYTTLINMYEANGQIDKAMQVLERMGSGSL 669



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 83/194 (42%), Gaps = 3/194 (1%)

Query: 188 DPDHITIGALMKACA---NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
           +P +  +  L KA A    + +++   +V K++++  ++       + +    Q  +W  
Sbjct: 141 EPPNDILHNLAKAVAVRVASEKLNSDEDVMKIVNETGLRVDVRSMNVVVWQLGQMQNWYA 200

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  V+      GV P+    + LI   G   ++  A ++ +  +  GI   I ++++LM 
Sbjct: 201 ATKVFRAFRSAGVEPNAYVCTTLIAALGCGRRLSQALKLFRWMEKAGIERPIFTFNALMV 260

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
           AC    +   A+EL+E M+ + + P   T   L++A        +    +  M++ G   
Sbjct: 261 ACGRCASGDTAVELFEEMEKLGIVPDRITFTGLVSATTAAGLWDRAQSFIDMMQARGFSI 320

Query: 365 NTITYSILLVACER 378
               Y  +  AC R
Sbjct: 321 GLHEYIEMQWACAR 334


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 152/332 (45%), Gaps = 10/332 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P +  FN L+S     K  E    + + ++  G+K +    + LI        VD  F
Sbjct: 36  PQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCFLHHVDYGF 95

Query: 148 --------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                      KPD V+F  LI    + G  + A  +L EM   +    PD +T  +LM+
Sbjct: 96  SVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMG--LVGCVPDVVTCNSLMR 153

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              + G++D+ R+++ ++    +K     Y+I IN   +    + A  ++D+M+ +GV+P
Sbjct: 154 GYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVP 213

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V  + LI     A +   A  + ++    G+S  I++YS+L+       N  + L L+
Sbjct: 214 NAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLF 273

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M+   +KP +     +I  +C   ++    EVLS +   GL P+  TY+ L+    R+
Sbjct: 274 QEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCRE 333

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
             +   L L  + +EDG +P    +  ++  C
Sbjct: 334 GSIIEALRLFRKMEEDGCMPGSCSYNVLLQGC 365



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 121/317 (38%), Gaps = 62/317 (19%)

Query: 33  NRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFK-- 85
           N L+R    QG+I +   +   M  KGL   D   ++ F N  CK +K I EA   F   
Sbjct: 149 NSLMRGYCSQGKIDKVRKIFHLMVSKGL-KPDVYSYSIFINGYCKVEK-IDEAMELFDEM 206

Query: 86  ----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
               +VPN    T+N L+     +     A  + R +   GL  D   Y+TL+    K G
Sbjct: 207 SHRGVVPNAV--TYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQG 264

Query: 142 KVDAM---FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            +D M   F+      VKPD VV+  +I    +S  V  A +VL+ +  E   + PD  T
Sbjct: 265 NLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVE--GLKPDVHT 322

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+      G +  A  +++                                    M 
Sbjct: 323 YTALVDGLCREGSIIEALRLFR-----------------------------------KME 347

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC--SNAKN 311
           + G +P     + L+             +++ E  ++G     ++ + L      +++  
Sbjct: 348 EDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVTRTFLKDFLPGNDSPA 407

Query: 312 WQKALELYEHMKSIKLK 328
            ++ L L+E  + +K+K
Sbjct: 408 IKQLLGLFEGHQGVKVK 424


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 177/398 (44%), Gaps = 20/398 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----P 88
           N L +  R+ + I LLE+M   G       Y+      CK+ +     +   ++V    P
Sbjct: 52  NGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCP 111

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
              +S   ++  +C   +  E    + +++Q  G + +   Y TL+    + G +D   E
Sbjct: 112 PDVVSYTTVINGLCKLDQVDEACRVMDKMIQR-GCQPNVITYGTLVDGFCRVGDLDGAVE 170

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            V+        P+ + +N ++        +D A  +  EM  E     PD  T   ++ +
Sbjct: 171 LVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEME-ESGSCPPDVFTYSTIVDS 229

Query: 201 CANAGQVDRA-REVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGV 257
              +G+VD A R V  M+ K     +P V  Y+  ++   + G  + A ++   MT+ G 
Sbjct: 230 LVKSGKVDDACRLVEAMVSK---GCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGC 286

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P+ V  + +ID     G+++ A+ +L+E  + G    +++Y+ L+ A       + A+ 
Sbjct: 287 SPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIG 346

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L E M      P + T N+L+   C  D++ +  ++LS M   G  PN ++Y+ ++    
Sbjct: 347 LVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLC 406

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 415
           +   V  G++LL Q   +  +P++V F  II    + Y
Sbjct: 407 KATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTY 444



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/380 (22%), Positives = 164/380 (43%), Gaps = 13/380 (3%)

Query: 51  MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLMSVCASSKDS 108
           M RKGL     V+ +    +C + +       F ++     P   T+N +++  + S   
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRL 60

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--------AMFENVKPDRVVFNAL 160
           + A ++L  + + G   +   Y T++    K+ +V+         +     PD V +  +
Sbjct: 61  DDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTV 120

Query: 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220
           I    +   VD A  V+ +M        P+ IT G L+      G +D A E+ + + + 
Sbjct: 121 INGLCKLDQVDEACRVMDKMIQ--RGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTER 178

Query: 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF-LSALIDFAGHAGKVEA 279
             +     Y   ++        + A  ++ +M + G  P +VF  S ++D    +GKV+ 
Sbjct: 179 GYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDD 238

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A  +++   ++G S  +++YSSL+     A    +A  L + M      P + T N +I 
Sbjct: 239 ACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIID 298

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
             C   ++ +   +L +M   G  PN +TY++LL A  +    E  + L+    E G +P
Sbjct: 299 GHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVP 358

Query: 400 NLVMFKCIIGMCSRRYEKAR 419
           NL  +  ++ M  ++ E  R
Sbjct: 359 NLFTYNSLLDMFCKKDEVER 378



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 148/332 (44%), Gaps = 18/332 (5%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            L +YN L+    ++  +     LL  M +KG +     Y+     +CK+ K  +     
Sbjct: 359 NLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLL 418

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +++ N   P + TFN ++     +   + A+++  L+QE+G   +   Y +L+    KS
Sbjct: 419 EQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKS 478

Query: 141 GKVD---------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            + D            +   PD + +N +I    +S  VDRA+ +  +M ++   + PD 
Sbjct: 479 RRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSD--GLAPDD 536

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T   ++ +      +D A  V +++ K         Y   I+   +TG+ + A  +   
Sbjct: 537 VTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQL 596

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           +  KG  PD V  S  ID+    G++  A E+L+     G+    ++Y++L+    +A  
Sbjct: 597 LLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASR 656

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCD 343
            + A++L+E M+    +P  +T   L+  L D
Sbjct: 657 TEDAVDLFEVMRQCGCEPDNATYTTLVGHLVD 688



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 162/401 (40%), Gaps = 57/401 (14%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN +I    + GRI E   LLE+M   G       Y       CK  KA ++A 
Sbjct: 287 SPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKA-EDAI 345

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              +++      P L T+N L+ +     + E A Q+L  + + G   +   Y T+I   
Sbjct: 346 GLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 405

Query: 138 AKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDV------------L 177
            K+ KV          +  N  PD V FN +I A  ++  VD A+++            L
Sbjct: 406 CKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNL 465

Query: 178 AEMNAEVHPV----------------------DPDHITIGALMKACANAGQVDRAREVYK 215
              N+ VH +                       PD IT   ++     + +VDRA +++ 
Sbjct: 466 VTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFL 525

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEF---ACSVYDDMTKKGVIPDEVFLSALIDFAG 272
            +    +      Y+I I   S    W F   A +V + M K G  P  +    LID   
Sbjct: 526 QMLSDGLAPDDVTYSIVI---SSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFC 582

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
             G ++ A EILQ   ++G    ++++S  +   S     ++A EL E M    L P   
Sbjct: 583 KTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTV 642

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           T N L+   CD  +    +++   M+  G  P+  TY+ L+
Sbjct: 643 TYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLV 683



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 173/395 (43%), Gaps = 16/395 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           + L++ G++ +   L+E M  KG       Y +    +CK+ K + EA    + +     
Sbjct: 228 DSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGK-LDEATALLQRMTRSGC 286

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------ 142
           +P + T+N ++         + A+ +L  + + G + +   YT L+    K GK      
Sbjct: 287 SPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIG 346

Query: 143 -VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            V+ M E    P+   +N+L+    +   V+RA  +L+ M  +     P+ ++   ++  
Sbjct: 347 LVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQK--GCVPNVVSYNTVIAG 404

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              A +V     + + +   N       +   I+   +T   + A  +++ + + G  P+
Sbjct: 405 LCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPN 464

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
            V  ++L+     + + + A  +L+E  + QG S  II+Y++++     +K   +A +L+
Sbjct: 465 LVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLF 524

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M S  L P   T + +I++LC    + +   VL  M   G  P  ITY  L+    + 
Sbjct: 525 LQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKT 584

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
            +++  L +L      G  P++V F   I   S+R
Sbjct: 585 GNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKR 619


>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
 gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
          Length = 941

 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 168/373 (45%), Gaps = 13/373 (3%)

Query: 47  LLEDMERKGLLDMDKVYHARF--FNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCA 103
           L+ +ME +G+     +YH     + + ++++     F+  K     P++ T+  L+++  
Sbjct: 421 LVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYT 480

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAMFENV-----KPDRV 155
                  A +V ++++  G+K + K Y+ LI    K        A+FE+V     KPD V
Sbjct: 481 KIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVV 540

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           ++N +I A    G +DRA  ++ EM  E     P   T   ++   A AG++ RA E++ 
Sbjct: 541 LYNNIIKAFCGMGNMDRAIHMVKEMQKE--RCRPTSRTFMPIIHGFARAGEMRRALEIFD 598

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
           M+ +     T   +   +    +    E A  + D+M   GV PDE   + ++      G
Sbjct: 599 MMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALG 658

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
               AFE   + +N+G+ + + +Y +L+ AC  +   Q AL +   M + K+       N
Sbjct: 659 DTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYN 718

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI        + +  +++  M   G+ P+  TY+  + AC +  D+      + + +  
Sbjct: 719 ILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAA 778

Query: 396 GVIPNLVMFKCII 408
           GV PN+  +  +I
Sbjct: 779 GVKPNVKTYTTLI 791



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 161/366 (43%), Gaps = 41/366 (11%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
           +P+   +  L+   A  +D E A   +R + E G++     Y+ ++   AK G  +A   
Sbjct: 326 DPSSHVYTSLIHAYAVGRDMEEALSCVRKMNEEGIEMSLVTYSIVVGGFAKFGNAEAADC 385

Query: 146 MFENVKPDRVVFNA-----LITACGQSGAVDRAFDVLAEMNAE--VHPVD---------- 188
            F+  K      NA     +I A  Q+  +DRA  ++ EM  E    P+D          
Sbjct: 386 WFKKAKERHTNLNAYIYGNIIYAYCQACNMDRAEALVREMEEEGIDAPLDIYHTMMDGYT 445

Query: 189 ---------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                                P  IT G L+      G+V +A EV KM+    IK   +
Sbjct: 446 MIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMK 505

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y++ IN   +  DW  A +V++D+ K G+ PD V  + +I      G ++ A  +++E 
Sbjct: 506 TYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEM 565

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           + +       ++  ++   + A   ++ALE+++ M+     PTV T NAL+  L +  ++
Sbjct: 566 QKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKM 625

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            K +E+L +M   G+ P+  TY+ ++       D        ++ + +G+  ++  ++ +
Sbjct: 626 EKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEAL 685

Query: 408 IGMCSR 413
           +  C +
Sbjct: 686 LKACCK 691



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 143/330 (43%), Gaps = 10/330 (3%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
           L  ++ +M      ++ E    V + ++E G       Y  LI    K GKV    E   
Sbjct: 434 LDIYHTMMDGYTMIRNEEKCLIVFKRLKECGFAPSVITYGCLINMYTKIGKVSKALEVSK 493

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 +K +   ++ LI    +      AF V  ++  +   + PD +    ++KA   
Sbjct: 494 MMKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKD--GLKPDVVLYNNIIKAFCG 551

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G +DRA  + K + K   + T   +   I+  ++ G+   A  ++D M + G IP    
Sbjct: 552 MGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHT 611

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +AL+       K+E A EIL E    G+S    +Y+++M   +   +  KA E +  M+
Sbjct: 612 FNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMR 671

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           +  L+  V T  AL+ A C   ++   + V  +M +  +  NT  Y+IL+    R+ D+ 
Sbjct: 672 NEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIW 731

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
               L+ Q  ++GV P++  +   I  C +
Sbjct: 732 EAADLMQQMNQEGVQPDIHTYTSFINACCK 761



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 128/327 (39%), Gaps = 45/327 (13%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK 151
           + T++ML++     KD   AF V   V + GLK D  LY  +I      G +D     VK
Sbjct: 504 MKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVK 563

Query: 152 -------------------------------------------PDRVVFNALITACGQSG 168
                                                      P    FNAL+    +  
Sbjct: 564 EMQKERCRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKR 623

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +++A ++L EM   +  V PD  T   +M   A  G   +A E +  +    ++     
Sbjct: 624 KMEKAVEILDEM--ALAGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFT 681

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   +  C ++G  + A +V  +M  + +  +    + LID     G +  A +++Q+  
Sbjct: 682 YEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQMN 741

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +G+   I +Y+S + AC  A +  +A +  E M++  +KP V T   LI    +     
Sbjct: 742 QEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLPE 801

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVA 375
           K +    ++K  GL P+   Y  L+ +
Sbjct: 802 KALSCFEELKLAGLKPDKAVYHCLMTS 828



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/319 (24%), Positives = 145/319 (45%), Gaps = 40/319 (12%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN +I+     G +   I ++++M+++      + +        ++ + ++ A   F ++
Sbjct: 542 YNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFARAGE-MRRALEIFDMM 600

Query: 88  PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 PT+ TFN L+      +  E A ++L  +  AG+  D   YTT++   A     
Sbjct: 601 RRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYA----- 655

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                              A G +G   +AF+   +M  E   +  D  T  AL+KAC  
Sbjct: 656 -------------------ALGDTG---KAFEYFTKMRNE--GLQLDVFTYEALLKACCK 691

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEV 262
           +G++  A  V + ++   I     VY I I+  ++ GD WE A  +   M ++GV PD  
Sbjct: 692 SGRMQSALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWE-AADLMQQMNQEGVQPDIH 750

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             ++ I+    AG +  A + ++E +  G+   + +Y++L+   +NA   +KAL  +E +
Sbjct: 751 TYTSFINACCKAGDMLRATKTMEEMEAAGVKPNVKTYTTLIHGWANASLPEKALSCFEEL 810

Query: 323 KSIKLKPTVSTMNALITAL 341
           K   LKP  +  + L+T+L
Sbjct: 811 KLAGLKPDKAVYHCLMTSL 829



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/355 (20%), Positives = 149/355 (41%), Gaps = 13/355 (3%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P+   F +++   A   D   A Q    ++  G+     +YT+LI   A    +
Sbjct: 286 FERIKKPSRREFGLMVGYYARRGDMHRARQTFESMRARGIDPSSHVYTSLIHAYAVGRDM 345

Query: 144 DAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +           E ++   V ++ ++    + G  + A D   +   E H  + +    G
Sbjct: 346 EEALSCVRKMNEEGIEMSLVTYSIVVGGFAKFGNAEAA-DCWFKKAKERH-TNLNAYIYG 403

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++ A   A  +DRA  + + + +  I    ++Y   ++  +   + E    V+  + + 
Sbjct: 404 NIIYAYCQACNMDRAEALVREMEEEGIDAPLDIYHTMMDGYTMIRNEEKCLIVFKRLKEC 463

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  P  +    LI+     GKV  A E+ +  K+ GI   + +YS L+      K+W  A
Sbjct: 464 GFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNMKTYSMLINGFLKLKDWTNA 523

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             ++E +    LKP V   N +I A C    + + + ++ +M+     P + T+  ++  
Sbjct: 524 FAVFEDVIKDGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHG 583

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMCS-RRYEKA-RTLNEHVLS 427
             R  ++   L +    +  G IP +  F   ++G+   R+ EKA   L+E  L+
Sbjct: 584 FARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMALA 638


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 185/408 (45%), Gaps = 49/408 (12%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SV 101
           + ++M  KG    +  Y      +C  ++ I EA   F  + +    PT+ T+ +L+ ++
Sbjct: 275 VFKEMPLKGCRRNEVAYTHLIHGLC-VERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKAL 333

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPD 153
           C S + SE A  +++ ++E G+K +   YT LI +     K++   E         + P+
Sbjct: 334 CGSERKSE-ALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPN 392

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAE--------------------VHP------- 186
            + +NALI    + G ++ A DV+  M +                     VH        
Sbjct: 393 VITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNK 452

Query: 187 -----VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
                V PD +T  +L+     +G  D A  +  +++   +   P  YT  I+   ++  
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKR 512

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            E AC ++D + +K VIP+ V  +ALID    AGKV  A  +L++  ++      +++++
Sbjct: 513 VEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNA 572

Query: 302 LM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           L+ G C++ K  ++A  L E M  I L+PTVST   LI  L               M S 
Sbjct: 573 LIHGLCTDGK-LKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSS 631

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           G  P+  TY+  +    R+  ++    ++++ KE+GV P+L  +  +I
Sbjct: 632 GTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLI 679



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 160/351 (45%), Gaps = 15/351 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P + T+N +++      + E A Q + ++ EAGL  D   YT+LI    +   +D+ F+ 
Sbjct: 216 PNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275

Query: 150 VKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            K         + V +  LI        +D A D+  +M  +     P   T   L+KA 
Sbjct: 276 FKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDD--DCYPTVRTYTVLIKAL 333

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             + +   A  + K + +  IK     YT+ I+        E A  +   M +KG++P+ 
Sbjct: 334 CGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNV 393

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
           +  +ALI+     G +E A ++++  +++ +     +Y+ L+ G C   +N  KA+ +  
Sbjct: 394 ITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCK--RNVHKAMGVLN 451

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M   K+ P V T N+LI   C          +LS M   GL P+  TY+ ++ +  +  
Sbjct: 452 KMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSK 511

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFN 429
            VE    L    ++  VIPN+VM+  +I G C + +  +A  + E +LS N
Sbjct: 512 RVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKN 562



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 191/416 (45%), Gaps = 35/416 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS--QKAIKEAFRFF 84
           +YN LI    ++G I + +D++E ME + L    + Y+      CK    KA+    +  
Sbjct: 395 TYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKML 454

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +    P + T+N L+     S + + A+++L L+ + GL  D   YT++I +  KS +V+
Sbjct: 455 ERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVE 514

Query: 145 A---MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
               +F+     +V P+ V++ ALI    ++G V+ A  +L +M ++     P+ +T  A
Sbjct: 515 EACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSK--NCLPNSLTFNA 572

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+      G++  A  + + + K +++ T    TI I+   + GD++ A   +  M   G
Sbjct: 573 LIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSG 632

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
             PD    +  I      G+++ A +++ + K  G+S  + +YSSL+    +      A 
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAF 692

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCD--------GD----------QLPKTMEVLSDMK 358
            + + M     +P+  T  +LI  L +        G+          +    +E+L  M 
Sbjct: 693 VVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMV 752

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSR 413
             G+ PN  +Y  L++      ++ V   +    ++ +G+ P+ ++F  ++  C +
Sbjct: 753 EHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCK 808



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 134/290 (46%), Gaps = 15/290 (5%)

Query: 130 YTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
           Y +L+T    +G V  +F+       +   +I +C          D+  +MN +      
Sbjct: 126 YASLLTLLINNGYVGVVFK-------IRLLMIKSCDSVADTLFVLDLCRKMNKDESFELK 178

Query: 190 DHITIG---ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEF 244
             + IG    L+ + A  G VD  ++VY  +     K  P +YT    +N   + G+ E 
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVY--MEMLEDKVCPNIYTYNKMVNGYCKVGNVEE 236

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A      + + G+ PD    ++LI        +++AF++ +E   +G     ++Y+ L+ 
Sbjct: 237 ANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIH 296

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                +   +A++L+  MK     PTV T   LI ALC  ++  + + ++ +M+  G+ P
Sbjct: 297 GLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKP 356

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           N  TY++L+ +   +  +E    LL Q  E G++PN++ +  +I G C R
Sbjct: 357 NIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKR 406



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 118/263 (44%), Gaps = 3/263 (1%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +N L+ +  + G VD    V  EM  +   V P+  T   ++      G V+ A +   M
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLED--KVCPNIYTYNKMVNGYCKVGNVEEANQYVSM 243

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           I +  +      YT  I    Q  D + A  V+ +M  KG   +EV  + LI       +
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERR 303

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           ++ A ++  + K+      + +Y+ L+ A   ++   +AL L + M+   +KP + T   
Sbjct: 304 IDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTV 363

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           LI +LC   +L K  E+L  M   GL PN ITY+ L+    ++  +E  L ++   +   
Sbjct: 364 LIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRN 423

Query: 397 VIPNLVMFKCII-GMCSRRYEKA 418
           + PN   +  +I G C R   KA
Sbjct: 424 LRPNTRTYNELIKGYCKRNVHKA 446



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 115/307 (37%), Gaps = 69/307 (22%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H+Y   I    R+GR+ +  D++  M+  G+                             
Sbjct: 638 HTYTTFIQTYCREGRLQDAEDMVAKMKENGV----------------------------- 668

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC--AKSGKV 143
              +P L T++ L+        +  AF VL+ + + G +     + +LI      K GKV
Sbjct: 669 ---SPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKV 725

Query: 144 -----------------------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAE 179
                                  + M E+ V P+   +  L+    + G +  A  V   
Sbjct: 726 KGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDH 785

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCS- 237
           M  +   + P  +   AL+  C    ++++  E  K++      G  P++ +  I  C  
Sbjct: 786 MQQK-EGISPSELVFNALLSCCC---KLEKHNEAAKVVDDMICVGHLPQLESCKILICRL 841

Query: 238 -QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            + G+ E   SV+ ++ + G   DE+    +ID  G  G VEA +E+    +  G +   
Sbjct: 842 YKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSS 901

Query: 297 ISYSSLM 303
            +YS L+
Sbjct: 902 QTYSLLI 908


>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 1627

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 179/413 (43%), Gaps = 25/413 (6%)

Query: 30   HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCK---SQKAIKEAF 81
             +YN +I     +G+  +   L  +M  +G    D V Y A     CK      AI+   
Sbjct: 1185 QAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLN 1244

Query: 82   RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
               ++   PT   + ML+++     D+ GA  +   ++    + D   YT LI    K+G
Sbjct: 1245 EMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAG 1304

Query: 142  KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            ++D  +        E  +PD V  N +I   G++G +D A  +  EM  E     P  +T
Sbjct: 1305 RIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEM--ETLRCIPSVVT 1362

Query: 194  IGALMKACANAGQVDRAREV---YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
               ++KA   +    RA EV   ++ + +  I  +   Y+I I+   +T   E A  + +
Sbjct: 1363 YNTIIKALFESK--SRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLE 1420

Query: 251  DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            +M +KG  P      +LID  G A + + A E+ QE K    S     Y+ ++     A 
Sbjct: 1421 EMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAG 1480

Query: 311  NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
                A+ +++ M  +   P V   NAL++ L     L + +  +  M+  G  P+  +Y+
Sbjct: 1481 RLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYN 1540

Query: 371  ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTL 421
            I+L    +       + +LS  K+  V P++V +  ++G  S    +E+A  L
Sbjct: 1541 IILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKL 1593



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 154/363 (42%), Gaps = 47/363 (12%)

Query: 31   SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
            +Y  LIR     GRI E      +M+R+G    D V+     N       + +A + F+ 
Sbjct: 1292 TYTELIRGLGKAGRIDEAYHFFCEMQREGCRP-DTVFMNNMINFLGKAGRLDDAMKLFQE 1350

Query: 87   VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            +      P++ T+N ++     SK                               +++ +
Sbjct: 1351 METLRCIPSVVTYNTIIKALFESK-------------------------------SRASE 1379

Query: 143  VDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
            V + FE +K     P    ++ LI    ++  +++A  +L EM+ +  P  P      +L
Sbjct: 1380 VPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCP--AAYCSL 1437

Query: 198  MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            + A   A + D A E+++ + +     +  VY + I    + G  + A +++D+M K G 
Sbjct: 1438 IDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGC 1497

Query: 258  IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             PD    +AL+      G ++ A   ++  +  G    I SY+ ++   +      +A+E
Sbjct: 1498 APDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAME 1557

Query: 318  LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
            +  +MK   ++P V + N ++ AL       +  +++ +M +LG   + ITYS +L A  
Sbjct: 1558 MLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIG 1617

Query: 378  RKD 380
            + D
Sbjct: 1618 KVD 1620



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 139/338 (41%), Gaps = 43/338 (12%)

Query: 219  KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAG 275
            + N +     Y   I+C      +     +  +M +     V P E  LS ++   G+A 
Sbjct: 1106 RRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTPTE--LSDVVRMLGNAK 1163

Query: 276  KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTM 334
             V  A  I  + K +       +Y+S++    +   ++K  +LY  M +     P   T 
Sbjct: 1164 MVRQAITIFYQIKTRKCQPIAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTY 1223

Query: 335  NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            +ALI+A C   +    +++L++MK +G+ P T  Y++L+    + +D    L L  + + 
Sbjct: 1224 SALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRH 1283

Query: 395  DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF-----NSGRPQ---IENKWTSL---- 442
                P++  +  +I    R   KA  ++E    F        RP    + N    L    
Sbjct: 1284 QYCRPDVFTYTELI----RGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAG 1339

Query: 443  ----ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR--------ERLVENLGVSAD 490
                A+ +++E      IP+V   + ++  L   + +  R        ER+ E+ G+S  
Sbjct: 1340 RLDDAMKLFQEMETLRCIPSVVTYNTIIKAL---FESKSRASEVPSWFERMKES-GISPS 1395

Query: 491  ALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPC 526
            +   S    LIDGF + +   +A  LLEE    G  PC
Sbjct: 1396 SFTYS---ILIDGFCKTNRMEKAMMLLEEMDEKGFPPC 1430


>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 711

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 117/502 (23%), Positives = 215/502 (42%), Gaps = 86/502 (17%)

Query: 81  FRFFKLVPNPTLS--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           +  F L    TL+  T+N L+  CA + D E A  ++  +++ G ++D   Y+ +I +  
Sbjct: 186 YEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLISRMRQDGYQSDFVNYSLVIQSLT 245

Query: 139 KSGKVDA-----MFENVKPDRV-----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
           +  K+D+     +++ ++ D++     + N +I    +SG   RA  +L    A+   + 
Sbjct: 246 RCNKIDSVMLQRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSRALQLLG--MAQATGLS 303

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
               T+ +++ A AN+G+   A  +++ + +  IK   + Y   +    +TG  + A  +
Sbjct: 304 AKTATLVSIISALANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELM 363

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
             +M K+GV PDE   S LID   +AG+ E+A  +L+E +   +      +S L+    +
Sbjct: 364 VSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRD 423

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
              WQK  ++ + MKSI +KP     N +I      + L   M     M S G+ P+ +T
Sbjct: 424 RGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVT 483

Query: 369 YSILL------------------------VAC--------------ERKDDVEVGLMLLS 390
           ++ L+                        + C              ER DD++    LL 
Sbjct: 484 WNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMK---RLLG 540

Query: 391 QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREA 450
           + K  G++PN+V    ++ +    Y K+   N+                   A+    E 
Sbjct: 541 KMKSQGILPNVVTHTTLVDV----YGKSGRFND-------------------AIECLEEM 577

Query: 451 IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV-SADALKRSNLC--SLIDGFGE- 506
              G  P+  + + ++          + E+ V    V ++D LK S L   SLI+ FGE 
Sbjct: 578 KSVGLKPSSTMYNALINAYA---QRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGED 634

Query: 507 -YDPRAFSLLEEAASFGIVPCV 527
             D  AF++L+     G+ P V
Sbjct: 635 RRDAEAFAVLQYMKENGVKPDV 656



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 170/384 (44%), Gaps = 24/384 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA----FRFFKLVPNP 90
           L   GR  E   L E++ + G+    K Y+A      K+   +K+A        K   +P
Sbjct: 316 LANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKT-GPLKDAELMVSEMEKRGVSP 374

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
              T+++L+    ++   E A  VL+ ++   ++ +  +++ L+      G+    F+  
Sbjct: 375 DEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTFQVL 434

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  VKPDR  +N +I   G+   +D A      M +E   ++PD +T   L+    
Sbjct: 435 KEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSE--GIEPDRVTWNTLIDCHC 492

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G+   A E+++ + +         Y I IN       W+    +   M  +G++P+ V
Sbjct: 493 KHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVV 552

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L+D  G +G+   A E L+E K+ G+      Y++L+ A +     ++A+  +  M
Sbjct: 553 THTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVM 612

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            S  LKP++  +N+LI A  +  +  +   VL  MK  G+ P+ +TY+ L+ A  R D  
Sbjct: 613 TSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKF 672

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKC 406
           +         K  GV   ++M  C
Sbjct: 673 Q---------KVPGVYEEMIMSGC 687



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 115/512 (22%), Positives = 206/512 (40%), Gaps = 82/512 (16%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF----- 81
           +YN LI    R   I + ++L+  M + G       Y + F N     +++         
Sbjct: 201 TYNALIGACARNNDIEKALNLISRMRQDG-------YQSDFVNYSLVIQSLTRCNKIDSV 253

Query: 82  ---RFFKLVPNPTL----STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
              R +K +    L       N ++   A S D   A Q+L + Q  GL A      ++I
Sbjct: 254 MLQRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSII 313

Query: 135 TTCAKSGKV---DAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
           +  A SG+    +A+FE      +KP    +NAL+    ++G +  A  +++EM  E   
Sbjct: 314 SALANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEM--EKRG 371

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE--- 243
           V PD  T   L+ A  NAG+ + AR V K +   +++    V++  +      G+W+   
Sbjct: 372 VSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTF 431

Query: 244 ---------------------------FAC-----SVYDDMTKKGVIPDEVFLSALIDFA 271
                                      F C     + +D M  +G+ PD V  + LID  
Sbjct: 432 QVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 491

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G+   A E+ +  + +G      +Y+ ++ +  + + W     L   MKS  + P V
Sbjct: 492 CKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNV 551

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T   L+       +    +E L +MKS+GL P++  Y+ L+ A  ++   E  +     
Sbjct: 552 VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRV 611

Query: 392 AKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM---- 445
              DG+ P+L+    +I      RR  +A  + ++ +  N  +P +    T +  +    
Sbjct: 612 MTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQY-MKENGVKPDVVTYTTLMKALIRVD 670

Query: 446 -------VYREAIVAGTIPTVEVVSKVLGCLQ 470
                  VY E I++G  P  +  S +   L+
Sbjct: 671 KFQKVPGVYEEMIMSGCKPDRKARSMLRSALR 702



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/346 (20%), Positives = 149/346 (43%), Gaps = 49/346 (14%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTLITTCAKSGK 142
           +  VP P   +  ++ S+C+S+     A+ V+  +Q+  L    +L Y+ LI    +S K
Sbjct: 127 YSAVPAPYWHS--LIKSLCSSTSSLGLAYAVVSWLQKHNLCFSYELLYSILIHALGRSEK 184

Query: 143 VDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
           +   F     + + P  + +NALI AC ++  +++A ++++ M  + +    D +    +
Sbjct: 185 LYEAFLLSQKQTLTP--LTYNALIGACARNNDIEKALNLISRMRQDGY--QSDFVNYSLV 240

Query: 198 MKACANAGQVDRA--REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +++     ++D    + +YK I +  +                    E    + +D+   
Sbjct: 241 IQSLTRCNKIDSVMLQRLYKEIERDKL--------------------ELDVQLVNDI--- 277

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
                      ++ FA  +G    A ++L  A+  G+S    +  S++ A +N+    +A
Sbjct: 278 -----------IMGFA-KSGDPSRALQLLGMAQATGLSAKTATLVSIISALANSGRTLEA 325

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             L+E ++   +KP     NAL+        L     ++S+M+  G+ P+  TYS+L+ A
Sbjct: 326 EALFEELRQSGIKPRTKAYNALLKGYVKTGPLKDAELMVSEMEKRGVSPDEHTYSLLIDA 385

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
                  E   ++L + +   V PN  +F  ++     R E  +T 
Sbjct: 386 YVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEWQKTF 431


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 125/527 (23%), Positives = 226/527 (42%), Gaps = 80/527 (15%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  +++YN LIR     G + + +    +MER G L     Y+      CK  + I EA
Sbjct: 6   VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR-IDEA 64

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F   K + +    P L ++N++++        + A+++L   +E G K            
Sbjct: 65  FGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEIL---EEMGYKG----------- 110

Query: 137 CAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                          PD V +N L+    + G   +A  + AEM    + V P  +T  A
Sbjct: 111 -------------FTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVR--NGVSPSVVTYTA 155

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ +   A  ++RA E +  +    ++     YT  I+  S+ G    A  + ++MT+ G
Sbjct: 156 LINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESG 215

Query: 257 VIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
             P  V  +A I   GH    ++E A  ++QE   +G++  ++SYS+++          +
Sbjct: 216 FSPSVVTYNAFIH--GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDR 273

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ++ + M    + P   T ++LI  LC+  +L +  ++  +M  +GL P+  TY+ L+ 
Sbjct: 274 AFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLIN 333

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 434
           A   + D+   L L  +    G +P+ V +  +I   ++   +ART     L F      
Sbjct: 334 AYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNK---QARTREAKRLLFK----- 385

Query: 435 IENKWTSLALMVYREAIVA-----------GTIPTVEVVSKVLG-CLQ-LPYNAD-IRER 480
                     ++Y E++ +             I    VV+ + G C++ L + AD + E 
Sbjct: 386 ----------LIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFES 435

Query: 481 LVENLGVSADALKRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIVP 525
           +VE      +A+       +I G   G   P+AF+L +E    G VP
Sbjct: 436 MVERNHKPGEAVYN----VIIHGHCRGGNLPKAFNLYKEMIHSGFVP 478



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 161/404 (39%), Gaps = 63/404 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L R+G + E  ++LE+M  KG    +  Y+      CK     +      ++V N   
Sbjct: 88  NGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVS 147

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P++ T+  L++    +++   A +    ++  GL+ + + YTTLI   ++ G ++  +  
Sbjct: 148 PSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRI 207

Query: 148 -----------------------------------------ENVKPDRVVFNALITACGQ 166
                                                    + + PD V ++ +I+   +
Sbjct: 208 LNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCR 267

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
            G +DRAF +  EM  +   V PD +T  +L++      ++  A ++ + +    +    
Sbjct: 268 KGELDRAFQMKQEMVEK--GVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDE 325

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             YT  IN     GD   A  ++D+M  KG +PD V  S LI+      +   A  +L +
Sbjct: 326 FTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFK 385

Query: 287 AKNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPTV 331
              +      ++Y +L+  CSN +                  +A  ++E M     KP  
Sbjct: 386 LIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGE 445

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           +  N +I   C G  LPK   +  +M   G  P+T+T   L+ A
Sbjct: 446 AVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKA 489



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 132/294 (44%), Gaps = 26/294 (8%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M +  V P+    + LI      G+++       E +  G    +++Y++L+ A      
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +A  L + M S  ++P + + N +I  LC    + +  E+L +M   G  P+ +TY+ 
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSRRYEKARTLNEHVLSFNS 430
           LL    ++ +    L++ ++   +GV P++V +  +I  MC     KAR LN  +  F+ 
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMC-----KARNLNRAMEFFDQ 175

Query: 431 GRPQ----IENKWTSLALMVYREAIVAGTIPTV-EVVSKVLGCLQLPYNADIR-----ER 480
            R +     E  +T+L     R+ ++      + E+         + YNA I      ER
Sbjct: 176 MRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLER 235

Query: 481 LVENLGVSADALKRS------NLCSLIDGF---GEYDPRAFSLLEEAASFGIVP 525
           + E LGV  + +++       +  ++I GF   GE D RAF + +E    G+ P
Sbjct: 236 MEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELD-RAFQMKQEMVEKGVSP 288


>gi|298707694|emb|CBJ26011.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1173

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 165/344 (47%), Gaps = 21/344 (6%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
            P P L  + ++M  CA  K  + A ++L  +  AG+  +  +  T ++ CAK G+V   
Sbjct: 259 APAPDLLLYAVVMKACAWGKRWQQAIRLLDDMSAAGVAPNVVVVNTALSACAKCGQVSRA 318

Query: 147 FE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
            +          V P+   +N++I+   ++G    A   LA+   +   V P+ +T  ++
Sbjct: 319 TQLLQEMQEKYGVAPEVRSYNSVISGHERAGEWREAL-ALAKRMEQADGVLPNVVTFNSV 377

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKK 255
           + AC  AG+ + A  V  M+ +  ++  P+V  +  AI  C+  G WE A  + + M  +
Sbjct: 378 IGACKTAGRPEEALAVLGMLRRKGLQ--PDVISFNSAIGACASGGKWEVALQLLELMPSE 435

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQE---AKNQGISVGIISYSSLMGACSNAKNW 312
           GV PD +  +  +D     G+ E A  +  E   + ++ +   + +Y++LM   S+A   
Sbjct: 436 GVTPDLMTYNIALDACVKGGQWEMAMSLFDELVASGDESLRPDLYTYNTLMTVFSDAGML 495

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDMKSLGLCPNTITY 369
            +ALEL E  K+ +L+P V T + LI A C+     Q    ++++SDM++ G+ PN  TY
Sbjct: 496 PRALELLEEAKAKRLRPDVVTYSTLIRA-CERSMPSQPDVALKLVSDMEAEGVRPNNTTY 554

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             + ++  R       L LL      G  P+ + +  ++ +  R
Sbjct: 555 VGVAISLGRSARPLECLDLLRSMHGKGTPPDAICYLAVLKVLDR 598



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 173/435 (39%), Gaps = 119/435 (27%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA----GLKADCKLYTTLITT---CAK 139
           V +P  S   M M   AS  D       LR  +EA    G      LY T +     C K
Sbjct: 122 VQDPGESRVKMWMRSAASKGDHNRVAMYLRKYREAKVLKGELPRIALYNTALRALDRCKK 181

Query: 140 SGKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA------------ 182
                ++F     + V PDR  +  +++AC + G    A  +LAEM A            
Sbjct: 182 WRLALSVFREMQSDGVDPDRDSYFFVMSACSKRGEAKTALALLAEMKARRRQQQQQQQQQ 241

Query: 183 ----------EVHPVD----PDHITIGALMK----------------------------- 199
                     EV   D    PD +    +MK                             
Sbjct: 242 RAGGGPGGYGEVEDEDGAPAPDLLLYAVVMKACAWGKRWQQAIRLLDDMSAAGVAPNVVV 301

Query: 200 ------ACANAGQVDRAREVYK-MIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYD 250
                 ACA  GQV RA ++ + M  KY +   PEV  Y   I+   + G+W  A ++  
Sbjct: 302 VNTALSACAKCGQVSRATQLLQEMQEKYGV--APEVRSYNSVISGHERAGEWREALALAK 359

Query: 251 DMTK-KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
            M +  GV+P+ V  +++I     AG+ E A  +L   + +G+   +IS++S +GAC++ 
Sbjct: 360 RMEQADGVLPNVVTFNSVIGACKTAGRPEEALAVLGMLRRKGLQPDVISFNSAIGACASG 419

Query: 310 KNWQKALELYEHMKS-----------------IK---------------------LKPTV 331
             W+ AL+L E M S                 +K                     L+P +
Sbjct: 420 GKWEVALQLLELMPSEGVTPDLMTYNIALDACVKGGQWEMAMSLFDELVASGDESLRPDL 479

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK--DDVEVGLMLL 389
            T N L+T   D   LP+ +E+L + K+  L P+ +TYS L+ ACER      +V L L+
Sbjct: 480 YTYNTLMTVFSDAGMLPRALELLEEAKAKRLRPDVVTYSTLIRACERSMPSQPDVALKLV 539

Query: 390 SQAKEDGVIPNLVMF 404
           S  + +GV PN   +
Sbjct: 540 SDMEAEGVRPNNTTY 554



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 103/501 (20%), Positives = 183/501 (36%), Gaps = 136/501 (27%)

Query: 17  KHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           K    A  V   + ++N +I      GR  E + +L  + RKGL   D +        C 
Sbjct: 359 KRMEQADGVLPNVVTFNSVIGACKTAGRPEEALAVLGMLRRKGL-QPDVISFNSAIGACA 417

Query: 73  SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG---LKA 125
           S    + A +  +L+P+    P L T+N+ +  C      E A  +   +  +G   L+ 
Sbjct: 418 SGGKWEVALQLLELMPSEGVTPDLMTYNIALDACVKGGQWEMAMSLFDELVASGDESLRP 477

Query: 126 DCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQS--GAVDRAFD 175
           D   Y TL+T  + +G +        +A  + ++PD V ++ LI AC +S     D A  
Sbjct: 478 DLYTYNTLMTVFSDAGMLPRALELLEEAKAKRLRPDVVTYSTLIRACERSMPSQPDVALK 537

Query: 176 VLAEMNAE-VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP-------- 226
           ++++M AE V P +  ++ +   +      G+  R  E   ++   + KGTP        
Sbjct: 538 LVSDMEAEGVRPNNTTYVGVAISL------GRSARPLECLDLLRSMHGKGTPPDAICYLA 591

Query: 227 ------------------------------------EVYTIAINCCSQTGDWEFACSVYD 250
                                               E Y   I    + G W  A ++ D
Sbjct: 592 VLKVLDRWDLAEEASLLFEEMVETIEQIALMPAIAEETYCCGIRALERLGKWSEAVALLD 651

Query: 251 DMTKKGV-----------------------IPDEVFLS---ALIDFAGHAGKVEAAFEIL 284
              +KG                        +P+E  +    A I  A   G VE A  I+
Sbjct: 652 QWRQKGSYDADNDRMYDQWYRALRLLSTGGLPEETDVKTSRAAIVSAARGGLVEDALAIM 711

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
           +  +++G  +G++ Y + + A   A   ++ LE+++ M +  ++P V         LC  
Sbjct: 712 RSMESRGFELGVVEYGAAIEAFEKAGKPERGLEMFDEMIAAGVEPDV---------LC-- 760

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
                                   Y+     C R+ D    +  +     +G++P    F
Sbjct: 761 ------------------------YAAATRCCCRRLDWAGAISFVETTLREGLLPTGKTF 796

Query: 405 KCIIGMC--SRRYEKARTLNE 423
           + + G+C  S RYE+   L E
Sbjct: 797 ETVAGLCRNSGRYEELWDLKE 817



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 132/315 (41%), Gaps = 22/315 (6%)

Query: 39  GRISECIDLLEDMERK-GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-----PTL 92
           G++S    LL++M+ K G+    + Y++   +  +     +EA    K +       P +
Sbjct: 313 GQVSRATQLLQEMQEKYGVAPEVRSYNS-VISGHERAGEWREALALAKRMEQADGVLPNV 371

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF----- 147
            TFN ++  C ++   E A  VL +++  GL+ D   + + I  CA  GK +        
Sbjct: 372 VTFNSVIGACKTAGRPEEALAVLGMLRRKGLQPDVISFNSAIGACASGGKWEVALQLLEL 431

Query: 148 ---ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-HPVDPDHITIGALMKACAN 203
              E V PD + +N  + AC + G  + A  +  E+ A     + PD  T   LM   ++
Sbjct: 432 MPSEGVTPDLMTYNIALDACVKGGQWEMAMSLFDELVASGDESLRPDLYTYNTLMTVFSD 491

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC--SQTGDWEFACSVYDDMTKKGVIPDE 261
           AG + RA E+ +      ++     Y+  I  C  S     + A  +  DM  +GV P+ 
Sbjct: 492 AGMLPRALELLEEAKAKRLRPDVVTYSTLIRACERSMPSQPDVALKLVSDMEAEGVRPNN 551

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
                +    G + +     ++L+    +G     I Y +++         ++A  L+E 
Sbjct: 552 TTYVGVAISLGRSARPLECLDLLRSMHGKGTPPDAICYLAVLKVLDRWDLAEEASLLFEE 611

Query: 322 M----KSIKLKPTVS 332
           M    + I L P ++
Sbjct: 612 MVETIEQIALMPAIA 626



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 120/302 (39%), Gaps = 38/302 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L R  R  EC+DLL  M  KG    D + +     V       +EA   F+ +   T+  
Sbjct: 561 LGRSARPLECLDLLRSMHGKGT-PPDAICYLAVLKVLDRWDLAEEASLLFEEMVE-TIEQ 618

Query: 95  FNMLMSVCASS------------KDSEGAFQVLRLVQEAGLKADC-KLYTT------LIT 135
             ++ ++   +            K SE    + +  Q+    AD  ++Y        L++
Sbjct: 619 IALMPAIAEETYCCGIRALERLGKWSEAVALLDQWRQKGSYDADNDRMYDQWYRALRLLS 678

Query: 136 TCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           T     + D     VK  R    A I +  + G V+ A  ++  M  E    +   +  G
Sbjct: 679 TGGLPEETD-----VKTSR----AAIVSAARGGLVEDALAIMRSM--ESRGFELGVVEYG 727

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           A ++A   AG+ +R  E++  +    ++     Y  A  CC +  DW  A S  +   ++
Sbjct: 728 AAIEAFEKAGKPERGLEMFDEMIAAGVEPDVLCYAAATRCCCRRLDWAGAISFVETTLRE 787

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS------YSSLMGACSNA 309
           G++P       +     ++G+ E  +++ +  ++  +  G ++      Y SL+ AC  A
Sbjct: 788 GLLPTGKTFETVAGLCRNSGRYEELWDLKELMRDIVVDGGGLARPGSSIYVSLIRACGAA 847

Query: 310 KN 311
           + 
Sbjct: 848 RR 849



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 44/201 (21%), Positives = 75/201 (37%), Gaps = 29/201 (14%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLS 93
           R G + + + ++  ME +G       Y A      K+ K  +    F +++     P + 
Sbjct: 700 RGGLVEDALAIMRSMESRGFELGVVEYGAAIEAFEKAGKPERGLEMFDEMIAAGVEPDVL 759

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN---- 149
            +      C    D  GA   +      GL    K + T+   C  SG+ + +++     
Sbjct: 760 CYAAATRCCCRRLDWAGAISFVETTLREGLLPTGKTFETVAGLCRNSGRYEELWDLKELM 819

Query: 150 ----------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP---------VDPD 190
                      +P   ++ +LI ACG +   D     LAEMN +  P          +P 
Sbjct: 820 RDIVVDGGGLARPGSSIYVSLIRACGAARRPDLVLRCLAEMNTDQAPGKSPGTLALEEPY 879

Query: 191 HIT--IGALMKACANAGQVDR 209
            ++  IGAL  AC    + DR
Sbjct: 880 MVSAAIGAL-SACGETSEADR 899


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 117/479 (24%), Positives = 187/479 (39%), Gaps = 78/479 (16%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR-------------FFN 69
            DV    H   +L+R G + E    LE+M          VYH               F  
Sbjct: 101 EDVESNNH-LRQLVRTGELEEGFKFLENM----------VYHGNVPDIIPCTTLIRGFCR 149

Query: 70  VCKSQKAIK--EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           + K++KA K  E       VP+  + T+N+++S    + +   A  VL       +  D 
Sbjct: 150 MGKTRKAAKILEVLEGSGAVPD--VITYNVMISGYCKAGEINNALSVL---DRMSVSPDV 204

Query: 128 KLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
             Y T++ +   SGK+    E        +  PD + +  LI A  +   V +A  +L E
Sbjct: 205 VTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDE 264

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
           M        PD +T   L+      G++D A +    +     +     + I +     T
Sbjct: 265 MRD--RGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCST 322

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G W  A  +  DM +KG  P  V  + LI+F    G +  A +IL++    G     +SY
Sbjct: 323 GRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSY 382

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           + L+      K   +A+E  E M S    P + T N ++TALC   ++   +E+L+ + S
Sbjct: 383 NPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSS 442

Query: 360 LG-----------------------------------LCPNTITYSILLVACERKDDVEV 384
            G                                   L P+TITYS L+    R+  V+ 
Sbjct: 443 KGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDE 502

Query: 385 GLMLLSQAKEDGVIPNLVMFKCI-IGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            +    + +  GV PN V F  I +G+C  R +  R ++  V   N G    E  +T L
Sbjct: 503 AIKFFHEFERMGVRPNAVTFNSIMLGLCKTR-QTDRAIDFLVYMINRGCKPTETSYTIL 560



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/391 (20%), Positives = 172/391 (43%), Gaps = 21/391 (5%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  + +YN ++R     G++ + +++L+ M ++        Y       C+    + +A
Sbjct: 200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDS-GVGQA 258

Query: 81  FRFFKLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            +    + +    P + T+N+L++ +C   +  E A + L  +  +G + +   +  ++ 
Sbjct: 259 MKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDE-AIKFLNDMPSSGCQPNVITHNIILR 317

Query: 136 TCAKSGK--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
           +   +G+         D + +   P  V FN LI    + G + RA D+L +M    H  
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPK--HGC 375

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P+ ++   L+       ++DRA E  + +           Y   +    + G  E A  
Sbjct: 376 QPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVE 435

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           + + ++ KG  P  +  + +ID    AGK   A ++L E + + +    I+YSSL+G  S
Sbjct: 436 ILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLS 495

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                 +A++ +   + + ++P   T N+++  LC   Q  + ++ L  M + G  P   
Sbjct: 496 REGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTET 555

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
           +Y+IL+     +   +  L LL++    G++
Sbjct: 556 SYTILIEGLAYEGMAKEALELLNELCNKGLM 586


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 192/433 (44%), Gaps = 30/433 (6%)

Query: 25  VSEQLHSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  L++YN LI   R+G +  E  ++ E+M+  G    DKV +    +V    +  +EA
Sbjct: 287 VAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGF-SPDKVTYNALLDVYGKSRRPREA 345

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
               K +      P++ T+N L+S  A     + A ++   + + G+K D   YTTL++ 
Sbjct: 346 MEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSG 405

Query: 137 CAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K+GK D    +FE ++     P+   FNALI   G  G       V  E+  ++    
Sbjct: 406 FEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEI--KICECV 463

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD +T   L+      G       V+K + +       + +   I+  S+ G ++ A ++
Sbjct: 464 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAI 523

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           Y  M   GV PD    +A++      G  E + ++L E K+       ++Y SL+ A +N
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 583

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            K  ++   L E + S  ++P    +  L+      D L +T     +++  G  P+  T
Sbjct: 584 GKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITT 643

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEK--------- 417
            + ++    R+  V     +L+  K+ G  P+L  +  ++ M SR   +EK         
Sbjct: 644 LNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREII 703

Query: 418 ARTLNEHVLSFNS 430
           A+ +   ++SFN+
Sbjct: 704 AKGMKPDIISFNT 716



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 181/410 (44%), Gaps = 22/410 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L ++GR S    LL D+   G+  +D   +        S    +EA   FK +      P
Sbjct: 195 LGKEGRASFAASLLHDLRNDGV-HIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRP 253

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLV---QEAGLKADCKLYTTLITTCAKSG---KVD 144
           TL T+N++++V    K      ++  LV   + +G+  D   Y TLI++C +     +  
Sbjct: 254 TLITYNVILNVYG--KMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAA 311

Query: 145 AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            +FE +K     PD+V +NAL+   G+S     A +VL EM  E     P  +T  +L+ 
Sbjct: 312 EVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEM--EASGFAPSIVTYNSLIS 369

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A A  G +D A E+   + K  IK     YT  ++   +TG  ++A  V+++M   G  P
Sbjct: 370 AYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQP 429

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    +ALI   G+ G      ++ +E K       I+++++L+          +   ++
Sbjct: 430 NICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVF 489

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + MK     P   T N LI+A        + M +   M   G+ P+  TY+ +L A  R 
Sbjct: 490 KEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARG 549

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLS 427
              E    +L++ K+    PN + +  ++   +  +  E+   L E + S
Sbjct: 550 GLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYS 599



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 152/327 (46%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P + T+N L++V   +        V + ++ AG   +   + TLI+  ++ G  D   A+
Sbjct: 464 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAI 523

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +       V PD   +NA++ A  + G  +++  VLAEM        P+ +T  +L+ A 
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKD--GRCKPNELTYCSLLHAY 581

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           AN  +V+R   + + I+   I+    +    +   S++         + ++ ++G  PD 
Sbjct: 582 ANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDI 641

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
             L+A++   G    V    EIL   K+ G +  + +Y+SLM   S  ++++K+ ++   
Sbjct: 642 TTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILRE 701

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           + +  +KP + + N +I A C   ++ +   + ++MK  GL P+ ITY+  + +      
Sbjct: 702 IIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSM 761

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
               + ++    ++G  PN   +  +I
Sbjct: 762 FIEAIDVVKYMIKNGCKPNQNTYNSLI 788



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 119/263 (45%), Gaps = 9/263 (3%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA---LMKACANAGQVDRARE 212
           V   +I+  G+ G    A  +L ++       D  HI I A   L+ A A+ G+   A  
Sbjct: 187 VVAVIISVLGKEGRASFAASLLHDLRN-----DGVHIDIYAYTSLITAYASNGRYREAVM 241

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           V+K + +   + T   Y + +N   + G  W     + D M   GV PD    + LI   
Sbjct: 242 VFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSC 301

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
                 E A E+ +E K  G S   ++Y++L+     ++  ++A+E+ + M++    P++
Sbjct: 302 RRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSI 361

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T N+LI+A      L + ME+ S M   G+ P+  TY+ LL   E+    +  + +  +
Sbjct: 362 VTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEE 421

Query: 392 AKEDGVIPNLVMFKCIIGMCSRR 414
            +  G  PN+  F  +I M   R
Sbjct: 422 MRVAGCQPNICTFNALIKMHGNR 444



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 146/365 (40%), Gaps = 46/365 (12%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---------- 142
           S   +++SV      +  A  +L  ++  G+  D   YT+LIT  A +G+          
Sbjct: 186 SVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKK 245

Query: 143 ---------------------------------VDAMFEN-VKPDRVVFNALITACGQSG 168
                                            VD+M  + V PD   +N LI++C +  
Sbjct: 246 LEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGS 305

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
             + A +V  EM A      PD +T  AL+     + +   A EV K +       +   
Sbjct: 306 LYEEAAEVFEEMKAA--GFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVT 363

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   I+  ++ G  + A  +   M KKG+ PD    + L+      GK + A ++ +E +
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMR 423

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
             G    I ++++L+    N  N+ + ++++E +K  +  P + T N L+          
Sbjct: 424 VAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDS 483

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +   V  +MK  G  P   T++ L+ A  R    +  + +  +  + GV P+L  +  ++
Sbjct: 484 EVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVL 543

Query: 409 GMCSR 413
              +R
Sbjct: 544 AALAR 548



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 151/338 (44%), Gaps = 19/338 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKS-QKAIKEAFRFFKLVPNPTLS 93
           + G  SE   + ++M+R G +     ++     ++ C    +A+    R       P LS
Sbjct: 478 QNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLS 537

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENV 150
           T+N +++  A     E + +VL  +++   K +   Y +L+   A   +V+   A+ E +
Sbjct: 538 TYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEI 597

Query: 151 -----KPDRVVFNALITACGQSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                +P  V+   L+    +S  +   +RAF  L E         PD  T+ A++    
Sbjct: 598 YSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQG-----FSPDITTLNAMVSIYG 652

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
               V +  E+   I       +   Y   +   S+T  +E +  +  ++  KG+ PD +
Sbjct: 653 RRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDII 712

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + +I      G+++ A  I  E K+ G++  +I+Y++ + + ++   + +A+++ ++M
Sbjct: 713 SFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYM 772

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
                KP  +T N+LI   C  ++  +    +S++++L
Sbjct: 773 IKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLRNL 810


>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1285

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 157/356 (44%), Gaps = 12/356 (3%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           F+   +  +I+     F  +P  T+  FN +M V A S   +   Q+L  ++   L+ D 
Sbjct: 39  FDYPLADPSIRWPHLRFPHLPGATVQVFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDL 98

Query: 128 KLYTTLITTCAKSG------KVDAMFE----NVKPDRVVFNALITACGQSGAVDRAFDVL 177
             + TLI   AKSG        D + E     ++PD + +N LI+AC Q   +D A  V 
Sbjct: 99  VSFNTLINARAKSGCLAPGSAFDLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVF 158

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            EM A      PD  T  A++      G+   A  +++ + +   K     Y   +   +
Sbjct: 159 EEMMAS--ECRPDLWTYNAMVSVHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFA 216

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           + GD +    V +++ + G   D +  + +I   G  G+++ A  +  E +  G +   +
Sbjct: 217 KEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAV 276

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +Y+ L+ +         A ++ E M    LKPT+ T +ALI A   G +  + +   S M
Sbjct: 277 TYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHM 336

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            + G+ P+ + Y ++L    R  D+   + L      DG  P+  +++ ++   ++
Sbjct: 337 VASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAALAK 392



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 144/307 (46%), Gaps = 18/307 (5%)

Query: 90  PTLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--- 144
           P L +FN L++  A S       AF +L  V++ GL+ D   Y TLI+ C++   +D   
Sbjct: 96  PDLVSFNTLINARAKSGCLAPGSAFDLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAV 155

Query: 145 AMFENV-----KPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           A+FE +     +PD   +NA+++    CG++   +R F  L E         PD +T  +
Sbjct: 156 AVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMFRELVEKG-----FKPDAVTYNS 210

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ A A  G  D    V + + +   K     Y   I+   + G  + A  +YD+M   G
Sbjct: 211 LLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRALG 270

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
             PD V  + LID  G   ++  A ++L+E  + G+   ++++S+L+ A +     ++A+
Sbjct: 271 CTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEAV 330

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
             + HM +  +KP       ++  +     + K M +   M + G  P+   Y ++L A 
Sbjct: 331 RTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAAL 390

Query: 377 ERKDDVE 383
            + ++ +
Sbjct: 391 AKGNEYD 397



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 145/320 (45%), Gaps = 13/320 (4%)

Query: 125 ADCKLYTTLITTCAKSGK-------VDAMF-ENVKPDRVVFNALITACGQSG--AVDRAF 174
           A  +++  ++   A+SG+       +DAM  + ++PD V FN LI A  +SG  A   AF
Sbjct: 61  ATVQVFNAMMGVYARSGRFDDVRQLLDAMRGQELEPDLVSFNTLINARAKSGCLAPGSAF 120

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
           D+L E+      + PD IT   L+ AC+    +D A  V++ +     +     Y   ++
Sbjct: 121 DLLLEVRQV--GLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMVS 178

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
              + G  + A  ++ ++ +KG  PD V  ++L+      G  +    + +E    G   
Sbjct: 179 VHGRCGKAQDAERMFRELVEKGFKPDAVTYNSLLYAFAKEGDADTVERVCEELVRAGFKK 238

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
             I+Y++++           AL LY+ M+++   P   T   LI +L   D++    +VL
Sbjct: 239 DGITYNTMIHMYGKMGRLDLALGLYDEMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVL 298

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
            +M   GL P  +T+S L+ A  +    E  +   S     GV P+ + +  ++ + +R 
Sbjct: 299 EEMADAGLKPTLVTFSALICAYAKGGRREEAVRTFSHMVASGVKPDRLAYLVMLDIIARS 358

Query: 415 YEKARTLNEHVLSFNSG-RP 433
            +  + +  +    N G RP
Sbjct: 359 GDMRKLMALYQTMMNDGYRP 378



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 157/350 (44%), Gaps = 21/350 (6%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P PT+ + N +M         +  + +++ +Q+ G K        ++    K+G +   F
Sbjct: 655 PLPTIDSVNGMMRALIIDGRLDELYVIVQELQDMGFKISKSTVILMLDAFTKAGDI---F 711

Query: 148 ENVK-----------PDRVVFNALITACGQSGAVDRAFDV-LAEMNAEVHPVDPDHITIG 195
           E +K           P+  ++ ++I+   ++    R  DV L  +  E    +PD   + 
Sbjct: 712 EVMKIYNGMKEAGYLPNMHIYRSMISLLCRN---KRYRDVELMVVEMERAGFEPDLTILN 768

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            L+      G  D+  EVY  I +  ++   + Y   I   S+    E   ++ ++M KK
Sbjct: 769 TLLLMYTGNGNFDKTVEVYHSILEAGLEPNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKK 828

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G+ P      +L+  +G A   E A ++ +E +++G  +    Y  LM    +A N  KA
Sbjct: 829 GLTPKLESYKSLLAASGKAKLWEQAEQLFEEIRSKGYRLNRSLYHMLMKIYRDACNHSKA 888

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            +L   MK   ++PT++TM+ L+T+        +  +VL+ +KS  L  +T+ YS +  A
Sbjct: 889 EQLLASMKEDGIEPTIATMHILMTSYGTAGHPDEAEKVLNSLKSSSLEVSTLPYSTVFNA 948

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLN 422
             +  D  +G+  L + K DGV P+  ++ C I    +C R  +    LN
Sbjct: 949 YLKNGDYNLGITKLLEMKADGVKPDHQVWTCFIRAASLCERTADAILLLN 998



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 127/620 (20%), Positives = 236/620 (38%), Gaps = 143/620 (23%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECI------DLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
             ++   L S+N LI     S C+      DLL ++ + GL   D + +    + C    
Sbjct: 91  GQELEPDLVSFNTLINARAKSGCLAPGSAFDLLLEVRQVGLRP-DVITYNTLISACSQGS 149

Query: 76  AIKEAFRFFKLVP----NPTLSTFNMLMSV---CASSKDSEGAFQVL------------- 115
            + +A   F+ +      P L T+N ++SV   C  ++D+E  F+ L             
Sbjct: 150 NLDDAVAVFEEMMASECRPDLWTYNAMVSVHGRCGKAQDAERMFRELVEKGFKPDAVTYN 209

Query: 116 ----------------RLVQE---AGLKADCKLYTTLITTCAKSGKVD---AMFENVK-- 151
                           R+ +E   AG K D   Y T+I    K G++D    +++ ++  
Sbjct: 210 SLLYAFAKEGDADTVERVCEELVRAGFKKDGITYNTMIHMYGKMGRLDLALGLYDEMRAL 269

Query: 152 ---PDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHP--------------------- 186
              PD V +  LI + G+   +  A  VL EM +A + P                     
Sbjct: 270 GCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALICAYAKGGRREEA 329

Query: 187 -----------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
                      V PD +    ++   A +G + +   +Y+ +     +    +Y + +  
Sbjct: 330 VRTFSHMVASGVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALYQVMLAA 389

Query: 236 CSQTGDWEFACSVYDDMT---------------------------KKGVI----PDEVFL 264
            ++  +++   +V  DM                            KK  +    PD   L
Sbjct: 390 LAKGNEYDEIEAVVQDMEVVCQMNPQLVSSILIKAECISQGAKLLKKACLQGHEPDSKSL 449

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +++D     GK E    +LQ  +     S  +IS  S+M  C N K    A++ Y  M+
Sbjct: 450 LSILDAYETTGKHEEGLSLLQFIREHVPSSCNLISECSIMLLCKNQK-IAAAMQEYSSMQ 508

Query: 324 SIK---LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            +K        +    LIT L + +  P+  +V SDM+ +G+ P+   Y  ++ A  +  
Sbjct: 509 MLKCGSFGQDCNLYEYLITCLEEAEFFPEASQVFSDMQFIGIEPSRKIYESMISAYCKLG 568

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG---RPQIEN 437
             E    L+ +A + G+  N++  +  +      Y K + L +H  +F  G    P I+ 
Sbjct: 569 FPETAHQLMDEAVQSGISLNILSSRVTM---IEAYGKIK-LWQHAENFVKGLKQEPSIDR 624

Query: 438 K-WTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN 484
           + W +L            A  V+   I  G +PT++ V+ ++  L +    D    +V+ 
Sbjct: 625 RIWNALIHAYAESGLYEHARAVFDIMIEKGPLPTIDSVNGMMRALIIDGRLDELYVIVQE 684

Query: 485 LGVSADALKRSNLCSLIDGF 504
           L      + +S +  ++D F
Sbjct: 685 LQDMGFKISKSTVILMLDAF 704



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 22/244 (9%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
            P   T+N L+ + + +   E  F +L  + + GL    + Y +L+    K+    + + +
Sbjct: 797  PNEDTYNTLIVMYSRNLRPEEGFTLLNEMGKKGLTPKLESYKSLLAASGKAKLWEQAEQL 856

Query: 147  FENVKP-----DRVVFNALIT----ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
            FE ++      +R +++ L+     AC  S    +A  +LA M  +   ++P   T+  L
Sbjct: 857  FEEIRSKGYRLNRSLYHMLMKIYRDACNHS----KAEQLLASMKED--GIEPTIATMHIL 910

Query: 198  MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            M +   AG  D A +V   +   +++ +   Y+   N   + GD+    +   +M   GV
Sbjct: 911  MTSYGTAGHPDEAEKVLNSLKSSSLEVSTLPYSTVFNAYLKNGDYNLGITKLLEMKADGV 970

Query: 258  IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII----SYSSLMGACSNAKNWQ 313
             PD    +  I  A    +   A  +L   ++    + I       SSL+   SN     
Sbjct: 971  KPDHQVWTCFIRAASLCERTADAILLLNSLRDCEFDLPIRLLTERTSSLLTEVSNFLEEL 1030

Query: 314  KALE 317
             ALE
Sbjct: 1031 DALE 1034


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 173/382 (45%), Gaps = 42/382 (10%)

Query: 54  KGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQ 113
           KGL    KV+ A  F+       I   FR  ++       ++ +L++      ++  A Q
Sbjct: 126 KGLCLNGKVHEALHFH----DHVIARGFRLNEV-------SYGILINGLCKMGETRAALQ 174

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACG 165
           VLR +    +  +  +Y+T+I +  K   V   +E         V PD V F+ALI    
Sbjct: 175 VLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFC 234

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG-----------------QVD 208
             G    AF +  EM   +  ++PD  T   L+ A    G                 QV+
Sbjct: 235 MVGQFKEAFGLFHEM--VLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVN 292

Query: 209 RAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           +A+ V+ +I K  +  TP+V  YTI I    +    + A S++++M  KG+ PD+V  S+
Sbjct: 293 KAKHVFNIIGKRRV--TPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSS 350

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LID    + ++  A+E+L +   +G    +I+Y+S + A        KA+ L + +K   
Sbjct: 351 LIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQG 410

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           ++P ++T N LI  LC   +      +  D+   G      TY+I++     +   +  +
Sbjct: 411 IQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAM 470

Query: 387 MLLSQAKEDGVIPNLVMFKCII 408
            LL + +++G  P++V ++ II
Sbjct: 471 TLLEKMEDNGCTPDVVTYETII 492



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 127/334 (38%), Gaps = 66/334 (19%)

Query: 64  HARF-FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
           H++F  N      AI   +R  ++ P+P++  FN ++     S ++     +        
Sbjct: 17  HSKFNSNHVDVHDAISSFYRMLRMNPSPSIIEFNKILGSLVKSNNNNYPIAI-------- 68

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAE-MN 181
                 LY  L                + P  V FN +I      G +D AF VLA+ + 
Sbjct: 69  -----SLYHRL------------QLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILK 111

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
              HP   D IT+  L+K     G+V                                  
Sbjct: 112 MGYHP---DTITLTTLIKGLCLNGKVHE-------------------------------- 136

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
              A   +D +  +G   +EV    LI+     G+  AA ++L++   + ++  ++ YS+
Sbjct: 137 ---ALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVVMYST 193

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           ++ +    K   +A ELY  M   K+ P V T +ALI   C   Q  +   +  +M    
Sbjct: 194 IIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTN 253

Query: 362 LCPNTITYSILLVA-CERKDDVEVGLMLLSQAKE 394
           + P+  T++IL+ A C+     E   +L    KE
Sbjct: 254 INPDVCTFNILVDALCKEGSTKETKNVLAVMMKE 287



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 80/177 (45%), Gaps = 3/177 (1%)

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           S   ++  A S+Y  +    + P  V  + +I+   H G+++ AF +L +    G     
Sbjct: 59  SNNNNYPIAISLYHRLQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDT 118

Query: 297 ISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           I+ ++L+ G C N K   +AL  ++H+ +   +    +   LI  LC   +    ++VL 
Sbjct: 119 ITLTTLIKGLCLNGK-VHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLR 177

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            +    +  N + YS ++ +  ++  V     L SQ     V P++V F  +I G C
Sbjct: 178 KIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFC 234



 Score = 43.5 bits (101), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 89/208 (42%), Gaps = 21/208 (10%)

Query: 25  VSEQLHSYN----RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  +HSY     RL +   + E + L  +M  KG+      Y +    +CKS++ I  A
Sbjct: 306 VTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSER-ISHA 364

Query: 81  FRFFKLV-----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           +     +     P   ++  + L ++C + +  + A  +++ +++ G++ +   Y  LI 
Sbjct: 365 WELLDQMHARGQPADVITYTSFLHALCKNHQ-VDKAVALVKKIKDQGIQPNINTYNILID 423

Query: 136 TCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K G+         D + +  K     +N +I      G  D A  +L +M  E +  
Sbjct: 424 GLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKM--EDNGC 481

Query: 188 DPDHITIGALMKACANAGQVDRAREVYK 215
            PD +T   +++A     +  +A ++ +
Sbjct: 482 TPDVVTYETIIRALFKNDENHKAEKLLR 509


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 192/433 (44%), Gaps = 30/433 (6%)

Query: 25  VSEQLHSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  L++YN LI   R+G +  E  ++ E+M+  G    DKV +    +V    +  +EA
Sbjct: 287 VAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGF-SPDKVTYNALLDVYGKSRRPREA 345

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
               K +      P++ T+N L+S  A     + A ++   + + G+K D   YTTL++ 
Sbjct: 346 MEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSG 405

Query: 137 CAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K+GK D    +FE ++     P+   FNALI   G  G       V  E+  ++    
Sbjct: 406 FEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEI--KICECV 463

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD +T   L+      G       V+K + +       + +   I+  S+ G ++ A ++
Sbjct: 464 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAI 523

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           Y  M   GV PD    +A++      G  E + ++L E K+       ++Y SL+ A +N
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYAN 583

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            K  ++   L E + S  ++P    +  L+      D L +T     +++  G  P+  T
Sbjct: 584 GKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITT 643

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEK--------- 417
            + ++    R+  V     +L+  K+ G  P+L  +  ++ M SR   +EK         
Sbjct: 644 LNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREII 703

Query: 418 ARTLNEHVLSFNS 430
           A+ +   ++SFN+
Sbjct: 704 AKGMKPDIISFNT 716



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 181/410 (44%), Gaps = 22/410 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L ++GR S    LL D+   G+  +D   +        S    +EA   FK +      P
Sbjct: 195 LGKEGRASFAASLLHDLRNDGV-HIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRP 253

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLV---QEAGLKADCKLYTTLITTCAKSG---KVD 144
           TL T+N++++V    K      ++  LV   + +G+  D   Y TLI++C +     +  
Sbjct: 254 TLITYNVILNVYG--KMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAA 311

Query: 145 AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            +FE +K     PD+V +NAL+   G+S     A +VL EM  E     P  +T  +L+ 
Sbjct: 312 EVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEM--EASGFAPSIVTYNSLIS 369

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A A  G +D A E+   + K  IK     YT  ++   +TG  ++A  V+++M   G  P
Sbjct: 370 AYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQP 429

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    +ALI   G+ G      ++ +E K       I+++++L+          +   ++
Sbjct: 430 NICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDSEVSGVF 489

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + MK     P   T N LI+A        + M +   M   G+ P+  TY+ +L A  R 
Sbjct: 490 KEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALARG 549

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLS 427
              E    +L++ K+    PN + +  ++   +  +  E+   L E + S
Sbjct: 550 GLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYS 599



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 141/294 (47%), Gaps = 10/294 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P + T+N L++V   +        V + ++ AG   +   + TLI+  ++ G  D   A+
Sbjct: 464 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAI 523

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +       V PD   +NA++ A  + G  +++  VLAEM        P+ +T  +L+ A 
Sbjct: 524 YRRMLDAGVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKD--GRCKPNELTYCSLLHAY 581

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           AN  +V+R   + + I+   I+    +    +   S++         + ++ ++G  PD 
Sbjct: 582 ANGKEVERMSALAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDI 641

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
             L+A++   G    V    EIL   K+ G +  + +Y+SLM   S  ++++K+ ++   
Sbjct: 642 TTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILRE 701

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           + +  +KP + + N +I A C   ++ +   + ++MK  GL P+ ITY+  + +
Sbjct: 702 IIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIAS 755



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 119/263 (45%), Gaps = 9/263 (3%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA---LMKACANAGQVDRARE 212
           V   +I+  G+ G    A  +L ++       D  HI I A   L+ A A+ G+   A  
Sbjct: 187 VVAVIISVLGKEGRASFAASLLHDLRN-----DGVHIDIYAYTSLITAYASNGRYREAVM 241

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           V+K + +   + T   Y + +N   + G  W     + D M   GV PD    + LI   
Sbjct: 242 VFKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSC 301

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
                 E A E+ +E K  G S   ++Y++L+     ++  ++A+E+ + M++    P++
Sbjct: 302 RRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSI 361

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T N+LI+A      L + ME+ S M   G+ P+  TY+ LL   E+    +  + +  +
Sbjct: 362 VTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEE 421

Query: 392 AKEDGVIPNLVMFKCIIGMCSRR 414
            +  G  PN+  F  +I M   R
Sbjct: 422 MRVAGCQPNICTFNALIKMHGNR 444



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 146/365 (40%), Gaps = 46/365 (12%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---------- 142
           S   +++SV      +  A  +L  ++  G+  D   YT+LIT  A +G+          
Sbjct: 186 SVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMVFKK 245

Query: 143 ---------------------------------VDAMFEN-VKPDRVVFNALITACGQSG 168
                                            VD+M  + V PD   +N LI++C +  
Sbjct: 246 LEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGS 305

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
             + A +V  EM A      PD +T  AL+     + +   A EV K +       +   
Sbjct: 306 LYEEAAEVFEEMKAA--GFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVT 363

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   I+  ++ G  + A  +   M KKG+ PD    + L+      GK + A ++ +E +
Sbjct: 364 YNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAMKVFEEMR 423

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
             G    I ++++L+    N  N+ + ++++E +K  +  P + T N L+          
Sbjct: 424 VAGCQPNICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAVFGQNGMDS 483

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +   V  +MK  G  P   T++ L+ A  R    +  + +  +  + GV P+L  +  ++
Sbjct: 484 EVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVL 543

Query: 409 GMCSR 413
              +R
Sbjct: 544 AALAR 548



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 152/338 (44%), Gaps = 19/338 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKS-QKAIKEAFRFFKLVPNPTLS 93
           + G  SE   + ++M+R G +     ++     ++ C    +A+    R       P LS
Sbjct: 478 QNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLS 537

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENV 150
           T+N +++  A     E + +VL  +++   K +   Y +L+   A   +V+   A+ E +
Sbjct: 538 TYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEI 597

Query: 151 -----KPDRVVFNALITACGQSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                +P  V+   L+    +S  +   +RAF  L E         PD  T+ A++    
Sbjct: 598 YSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQG-----FSPDITTLNAMVSIYG 652

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
               V +  E+   I       +   Y   +   S+T  +E +  +  ++  KG+ PD +
Sbjct: 653 RRRMVSKTNEILNFIKDSGFTPSLTTYNSLMYMYSRTEHFEKSEDILREIIAKGMKPDII 712

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + +I      G+++ A  I  E K+ G++  +I+Y++ + + ++   + +A+++ ++M
Sbjct: 713 SFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAIDVVKYM 772

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
              + KP  +T N+LI   C  ++  +    +S++++L
Sbjct: 773 IKNECKPNQNTYNSLIDWFCKLNRRDEANSFISNLRNL 810


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/414 (25%), Positives = 184/414 (44%), Gaps = 25/414 (6%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQK---AIKEAFRF 83
           +N+L+    +  +    I L E M+  G+   D   ++ F N  C+  +   A+    + 
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGI-SHDLYTYSIFINCFCRRSQLSLALAVLAKM 144

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK- 142
            KL   P + T + L++    SK    A  ++  + E G K D   +TTLI       K 
Sbjct: 145 MKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKA 204

Query: 143 ------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                 VD M +   +PD V +  ++    + G +D A  +L +M  E   ++ D +   
Sbjct: 205 SEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM--EKGKIEADVVIYN 262

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMT 253
            ++        +D A  ++  +    I+  P+V+T +  I+C    G W  A  +  DM 
Sbjct: 263 TIIDGLCKYKHMDDALNLFTEMDNKGIR--PDVFTYSSLISCLCNYGRWSDASRLLSDMI 320

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           ++ + P+ V  SALID     GK+  A ++  E   + I   I +YSSL+          
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 380

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A  ++E M S    P V T + LI   C   ++ + ME+  +M   GL  NT+TY+ L+
Sbjct: 381 EAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
               +  D +   M+  Q    GV PN++ +  ++ G+C   +  KA  + E++
Sbjct: 441 HGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 494



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 179/406 (44%), Gaps = 16/406 (3%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKA 76
           Y  D+       N      RIS+ + L++ M   G          + H  F +  K+ +A
Sbjct: 149 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHN-KASEA 207

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           +    +  +    P L T+  +++      D + A  +L+ +++  ++AD  +Y T+I  
Sbjct: 208 VALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDG 267

Query: 137 CAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K   +D           + ++PD   +++LI+     G    A  +L++M      ++
Sbjct: 268 LCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIE--RKIN 325

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ +T  AL+ A    G++  A ++Y  + K +I      Y+  IN        + A  +
Sbjct: 326 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 385

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           ++ M  K   P+ V  S LI     A +VE   E+ +E   +G+    ++Y++L+     
Sbjct: 386 FELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 445

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           A++   A  +++ M S+ + P + T N L+  LC   +L K M V   ++   + P+  T
Sbjct: 446 ARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYT 505

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           Y+I++    +   VE G  L       GV PN++ +  +I G C +
Sbjct: 506 YNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRK 551



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 166/388 (42%), Gaps = 15/388 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           NRL    ++ + +DL  DM +      +++ +K+  A    + K +  I    +   L  
Sbjct: 56  NRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSA-VAKMNKFELVISLGEQMQTLGI 114

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------ 142
           +  L T+++ ++          A  VL  + + G + D    ++L+     S +      
Sbjct: 115 SHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVA 174

Query: 143 -VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            VD M E   KPD   F  LI           A  ++ +M        PD +T G ++  
Sbjct: 175 LVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQ--RGCQPDLVTYGTVVNG 232

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G +D A  + K + K  I+    +Y   I+   +    + A +++ +M  KG+ PD
Sbjct: 233 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPD 292

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               S+LI    + G+   A  +L +   + I+  ++++S+L+ A        +A +LY+
Sbjct: 293 VFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 352

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    + P + T ++LI   C  D+L +   +   M S    PN +TYS L+    +  
Sbjct: 353 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAK 412

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            VE G+ L  +  + G++ N V +  +I
Sbjct: 413 RVEEGMELFREMSQRGLVGNTVTYTTLI 440



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 165/377 (43%), Gaps = 17/377 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           N L ++G I   + LL+ ME KG ++ D V Y+     +CK  K + +A   F  + N  
Sbjct: 231 NGLCKRGDIDLALSLLKKME-KGKIEADVVIYNTIIDGLCK-YKHMDDALNLFTEMDNKG 288

Query: 90  --PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
             P + T++ L+S   +      A ++L  + E  +  +   ++ LI    K GK+    
Sbjct: 289 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 348

Query: 144 ---DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
              D M + ++ PD   +++LI        +D A  +   M ++     P+ +T   L+K
Sbjct: 349 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK--DCFPNVVTYSTLIK 406

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               A +V+   E+++ + +  + G    YT  I+   Q  D + A  V+  M   GV P
Sbjct: 407 GFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHP 466

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + +  + L+D     GK+  A  + +  +   +   I +Y+ ++     A   +   EL+
Sbjct: 467 NILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELF 526

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
            ++    + P V   N +I+  C      +   +L  MK  G  PN+ TY+ L+ A  R 
Sbjct: 527 CNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRD 586

Query: 380 DDVEVGLMLLSQAKEDG 396
            D E    L+ + +  G
Sbjct: 587 GDREASAELIKEMRSCG 603



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/237 (20%), Positives = 96/237 (40%), Gaps = 12/237 (5%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  ++ DM K    P  V  + L+       K E    + ++ +  GIS  + +YS  + 
Sbjct: 67  AVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                     AL +   M  +  +P + T+++L+   C   ++   + ++  M  +G  P
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 413
           +T T++ L+      +     + L+ Q  + G  P+LV +  ++ G+C R          
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLL 246

Query: 414 -RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
            + EK +   + V+         + K    AL ++ E    G  P V   S ++ CL
Sbjct: 247 KKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCL 303



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 64/325 (19%), Positives = 136/325 (41%), Gaps = 34/325 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            +++G++ E   L ++M ++ + D D   ++   N       + EA   F+L+ +    P
Sbjct: 338 FVKEGKLVEAEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 396

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
            + T++ L+     +K  E   ++ R + + GL  +   YTTLI    ++   D      
Sbjct: 397 NVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNA---- 452

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
              ++VF  +++                        V P+ +T   L+      G++ +A
Sbjct: 453 ---QMVFKQMVSV----------------------GVHPNILTYNILLDGLCKNGKLAKA 487

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
             V++ + +  ++     Y I I    + G  E    ++ +++ KGV P+ +  + +I  
Sbjct: 488 MVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISG 547

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G  E A  +L++ K  G      +Y++L+ A     + + + EL + M+S      
Sbjct: 548 FCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGD 607

Query: 331 VSTMNALITALCDGDQLPKTMEVLS 355
            ST+  +   L DG      +++LS
Sbjct: 608 ASTIGLVTNMLHDGRLDKSFLDMLS 632


>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
          Length = 802

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 194/416 (46%), Gaps = 29/416 (6%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI------KEA 80
           +YN +IR      R+ E I+LLEDM  KG L     Y+     +CK ++ +      K+ 
Sbjct: 314 TYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKM 373

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +   LVP+    T+N L+ +      ++ A   L+  QE G + D   Y+ ++    K 
Sbjct: 374 AKEHGLVPDQV--TYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKE 431

Query: 141 GKV----DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           G++    D + E +  PD V + A++    + G VD+A  +L  M+   H   P+ ++  
Sbjct: 432 GRMSEAKDLINEMDCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHK--PNTVSYT 489

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           AL+      G+   ARE+  M  ++        Y++ ++   + G    AC V  +M  K
Sbjct: 490 ALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLK 549

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQK 314
           G  P  V ++ L+      G+   A + ++E  N+G ++ ++++++++ G C N +    
Sbjct: 550 GFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDE-LDA 608

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILL 373
           AL + + M  I     V T   L+  L    ++ +  E++  M   G+ P  +TY +++ 
Sbjct: 609 ALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIH 668

Query: 374 VACE--RKDDVEVGLMLLSQAKEDGVIPNLVMFK-CIIGMCSRRYEKARTLNEHVL 426
             C+  + DD+   L  +   ++   I N V+ K C++G    + E+A TL   VL
Sbjct: 669 RYCQMGKVDDLVAILEKMISRQKCRTIYNQVIEKLCVLG----KLEEADTLLGKVL 720



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 107/221 (48%), Gaps = 7/221 (3%)

Query: 199 KACANAGQVDRAREVYKMIH----KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           + CA     D  R   K  +    ++  +  P VY   +   S+T   + +  V   M +
Sbjct: 176 QVCAVLRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKR 235

Query: 255 KGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +G+    E F   ++ ++  AG++  A ++L   +  G+   ++  ++ +     A   +
Sbjct: 236 RGIYRTPEAFSRVMVSYS-RAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLE 294

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSIL 372
           KAL   E M+ + + P V T N +I   CD  ++ + +E+L DM S G  P+ ++ Y+I+
Sbjct: 295 KALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIM 354

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
              C+ K  VEV  ++   AKE G++P+ V +  +I M ++
Sbjct: 355 GYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTK 395



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 91/480 (18%), Positives = 204/480 (42%), Gaps = 76/480 (15%)

Query: 70  VCKSQKAIKEAFRFF-------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
           V +SQ   + A +FF       +   +P +  +  ++ V + +K  +G+ +VL L++  G
Sbjct: 180 VLRSQDDERVALKFFYWADRQWRYRHDPMV--YYSMLEVLSKTKLCQGSRRVLVLMKRRG 237

Query: 123 LKADCKLYTTLITTCAKSGKV-DAM-------FENVKPDRVVFNALITACGQSGAVDRAF 174
           +    + ++ ++ + +++G++ DA+          V+P+ ++ N  I    ++  +++A 
Sbjct: 238 IYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKAL 297

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
             L  M  +V  + P+ +T   +++   +  +V+ A E+                     
Sbjct: 298 RFLERM--QVVGIVPNVVTYNCMIRGYCDLHRVEEAIELL-------------------- 335

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGIS 293
                          +DM  KG +PD+V    ++ +     ++    +++++ AK  G+ 
Sbjct: 336 ---------------EDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLV 380

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
              ++Y++L+   +   +  +AL   +  +    +      +A++ ALC   ++ +  ++
Sbjct: 381 PDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDL 440

Query: 354 LSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           +++M     C P+ +TY+ ++    R  +V+    LL      G  PN V +  ++ GMC
Sbjct: 441 INEMD----CPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMC 496

Query: 412 --SRRYEKARTLN---EHVLSFNSGRPQI-------ENKWTSLALMVYREAIVAGTIPTV 459
              +  E    +N   EH  S NS    +       E K +  A  V RE ++ G  P  
Sbjct: 497 RTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSE-ACDVVREMVLKGFFPGP 555

Query: 460 EVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEE 517
             ++ +L  L          + +E       A+   N  ++I GF + D    A S+L++
Sbjct: 556 VEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDD 615


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 167/363 (46%), Gaps = 23/363 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA------IKEA 80
           +YN L+    R GR+ E   L+++M    +      Y   F  + ++ ++        E+
Sbjct: 266 TYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAES 325

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +   ++   T S   +L  +C   K ++ A QVL ++   GL     +Y TLI    + 
Sbjct: 326 LKKGVMLGAYTCSI--LLNGLCKDGKVAK-AEQVLEMLVHTGLVPTTVIYNTLINGYCQV 382

Query: 141 GKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
             +   F         +++PD + +NALI    +   V +A D++ EM  E   VDP   
Sbjct: 383 RDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM--EKSGVDPSVE 440

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+ A   AGQ+++   V   + +  IK     +   +    + G    A ++ DDM
Sbjct: 441 TFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDM 500

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             K V P+    +++ID    +G  E AF ++++ KN G+S  I++Y+ L+     +   
Sbjct: 501 IYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQI 560

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            +A EL   +++  L+P V + N +I+A C+     K +E+L +M   G+ P   TY  L
Sbjct: 561 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 620

Query: 373 LVA 375
           + A
Sbjct: 621 VSA 623



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/366 (25%), Positives = 167/366 (45%), Gaps = 18/366 (4%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           ++ L R G     + L  +  +KG++            +CK  K  K       LV    
Sbjct: 306 FDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGL 365

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----D 144
            PT   +N L++     +D  GAF +   ++   ++ D   Y  LI    K   V    D
Sbjct: 366 VPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAED 425

Query: 145 AMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            + E     V P    FN LI A G +G +++ F VL++M  +   +  D I+ G+++KA
Sbjct: 426 LVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQK--GIKSDVISFGSVVKA 483

Query: 201 CANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               G++  A  +   MI+K ++    +VY   I+   ++GD E A  + + M   GV  
Sbjct: 484 FCKNGKIPEAVAILDDMIYK-DVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSA 542

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
             V  + L+     + +++ A E++   +NQG+   ++SY++++ AC N  +  KALEL 
Sbjct: 543 SIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELL 602

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VAC 376
           + M    ++PT+ T + L++AL    ++     +   M    + P++  Y I++   V C
Sbjct: 603 QEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRC 662

Query: 377 ERKDDV 382
           E    V
Sbjct: 663 ENDSKV 668



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 123/257 (47%), Gaps = 2/257 (0%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P  V++N LI    Q   +  AF +  +M +    + PDHIT  AL+        V +A 
Sbjct: 367 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKSR--HIRPDHITYNALINGLCKLEMVTKAE 424

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           ++   + K  +  + E +   I+     G  E   +V  DM +KG+  D +   +++   
Sbjct: 425 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAF 484

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              GK+  A  IL +   + ++     Y+S++ A   + + ++A  L E MK+  +  ++
Sbjct: 485 CKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASI 544

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T N L+  LC   Q+ +  E++  +++ GL P+ ++Y+ ++ AC  K D +  L LL +
Sbjct: 545 VTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQE 604

Query: 392 AKEDGVIPNLVMFKCII 408
             + G+ P L  +  ++
Sbjct: 605 MNKYGIRPTLRTYHTLV 621



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 101/462 (21%), Positives = 205/462 (44%), Gaps = 30/462 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLV--QEAGLKADCKLYTTLITTCAKSGK----- 142
           P    +N ++  C ++ D + A  ++R +   E     D   Y  +I    +SGK     
Sbjct: 155 PDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDAL 214

Query: 143 --VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALM 198
              D M +  V P+ + +N +I    + G ++  F +  +M   +H    P+ +T   L+
Sbjct: 215 KVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQM---LHDGPKPNIVTYNVLL 271

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                AG++D  R +   +  +++      Y+I  +  ++TG+     S++ +  KKGV+
Sbjct: 272 SGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVM 331

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
                 S L++     GKV  A ++L+   + G+    + Y++L+      ++ + A  +
Sbjct: 332 LGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCI 391

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           +E MKS  ++P   T NALI  LC  + + K  +++ +M+  G+ P+  T++ L+ A   
Sbjct: 392 FEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGT 451

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNEHVLSFNSGRPQ- 434
              +E    +LS  ++ G+  +++ F  ++   C   +  E    L++ +    +   Q 
Sbjct: 452 AGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQV 511

Query: 435 --------IENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLV---E 483
                   IE+  T  A ++  +   +G   ++   + +L  L      D  E L+    
Sbjct: 512 YNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLR 571

Query: 484 NLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
           N G+  D +  + + S     G+ D +A  LL+E   +GI P
Sbjct: 572 NQGLRPDVVSYNTIISACCNKGDTD-KALELLQEMNKYGIRP 612



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/262 (20%), Positives = 106/262 (40%), Gaps = 1/262 (0%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           +PD   +N ++ AC  +G +D A  ++  M        PD  +   ++     +G+   A
Sbjct: 154 RPDTFAWNKVVQACVAAGDLDVALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDA 213

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            +V+  +    +      Y   I+   + GD E    + D M   G  P+ V  + L+  
Sbjct: 214 LKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSG 273

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
              AG+++    ++ E  +  +     +YS L    +     +  L L+       +   
Sbjct: 274 LCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLG 333

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
             T + L+  LC   ++ K  +VL  +   GL P T+ Y+ L+    +  D+     +  
Sbjct: 334 AYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFE 393

Query: 391 QAKEDGVIPNLVMFKCII-GMC 411
           Q K   + P+ + +  +I G+C
Sbjct: 394 QMKSRHIRPDHITYNALINGLC 415


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 150/347 (43%), Gaps = 14/347 (4%)

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           K+AFR    + N    P + T+++++     S + E A  +L  +   GLK +  +Y  L
Sbjct: 309 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 368

Query: 134 ITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I+   + G V    E        NV PD   +N+LI    + G V+ +    A+M  +  
Sbjct: 369 ISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQM--QER 426

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + P+  T   L+      G ++ A ++ + +    +K    +Y   +    ++ D E  
Sbjct: 427 GLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKV 486

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
            S +  M  +GV+ D      LI     +G +EAAF +L E +  G    +  YSSL+  
Sbjct: 487 SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISG 546

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
                + +KA  + + M    + P +   NALI  LC    +     V + + + GL PN
Sbjct: 547 LCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 606

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
            +TY+ L+    +  D+     L ++    G+ P+  ++  +   CS
Sbjct: 607 CVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCS 653



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 181/399 (45%), Gaps = 22/399 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----KAIKEAF 81
           +YN LI    R G + E     +DME  GL+     Y A    +CKS+     KA+ +  
Sbjct: 154 TYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEM 213

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              +L PN  +  +  L+       +++ AF++++ +  AG++ +   Y  L+    K G
Sbjct: 214 SCAELKPN--VVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMG 271

Query: 142 KVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++D         + ++ +PD + +N +I    +      AF +L+EM  E   + P+  T
Sbjct: 272 QMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEM--ENAGISPNVYT 329

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              ++     +G+ ++A ++ + +    +K    VY   I+   + G+   AC ++D MT
Sbjct: 330 YSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMT 389

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           K  V+PD    ++LI      G+VE + +   + + +G+     +YS L+       + +
Sbjct: 390 KVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLE 449

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A +L + M    LKP       L+ +    D + K       M   G+  +   Y IL+
Sbjct: 450 SAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI 509

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
                  ++E    +LS+ +++G +P++ ++  +I G+C
Sbjct: 510 HNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLC 548



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/385 (22%), Positives = 162/385 (42%), Gaps = 17/385 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-AIKEAFRFFKLVP--NPTLS 93
           + GR+ +  +++  M  +GL    +  +A   ++ ++   A+    R F +    +P + 
Sbjct: 59  KSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVY 118

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK-- 151
           T++ L+      ++ + A +VL  ++E G   +   Y  LI    +SG V+  F   K  
Sbjct: 119 TYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDM 178

Query: 152 ------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                 PD   + ALI    +S   + A  +L EM+     + P+ +    L+      G
Sbjct: 179 EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCA--ELKPNVVVYANLIDGFMREG 236

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
             D A ++ K +    ++     Y   +    + G  + A  +   M +    PD +  +
Sbjct: 237 NADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYN 296

Query: 266 ALID--FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +I+  F  H  K   AF +L E +N GIS  + +YS ++     +   +KA +L E M 
Sbjct: 297 LIIEGHFRHHNKK--DAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMT 354

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           +  LKP       LI+  C    +    E+   M  + + P+   Y+ L+    +   VE
Sbjct: 355 TKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVE 414

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
                 +Q +E G++PN   +  +I
Sbjct: 415 ESTKYFAQMQERGLLPNEFTYSGLI 439



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 138/320 (43%), Gaps = 13/320 (4%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV--------KPDRVVFNALITACGQS 167
           R + ++G ++   L   L+ T  KSG+V    E V         P     NAL+    ++
Sbjct: 37  RALSDSGHRSPAVL-DVLVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRA 95

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
            A+   + V   M      + PD  T   L++A     + D A++V   + +        
Sbjct: 96  DAMALLWKVREFMVGA--GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTV 153

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y + I    ++G  E A     DM   G++PD     ALI+    + +   A  +L E 
Sbjct: 154 TYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEM 213

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
               +   ++ Y++L+       N  +A ++ + M +  ++P   T + L+  LC   Q+
Sbjct: 214 SCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQM 273

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            +   +L  M      P+TITY++++    R  + +    LLS+ +  G+ PN+  +  +
Sbjct: 274 DRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIM 333

Query: 408 I-GMC-SRRYEKARTLNEHV 425
           I G+C S   EKA  L E +
Sbjct: 334 IHGLCQSGEPEKASDLLEEM 353



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 153/396 (38%), Gaps = 68/396 (17%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H Y   ++ G +     L++ M   GL   D +Y     +  KS    K +  F  ++ 
Sbjct: 439 IHGY---LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLD 495

Query: 89  NPTL---STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
              +     + +L+   +SS + E AF+VL  +++ G   D  +Y++LI+   K+   + 
Sbjct: 496 QGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREK 555

Query: 146 MF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
            F        + V P+ V +NALI    +SG +  A +V   + A+   + P+ +T  +L
Sbjct: 556 AFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAK--GLVPNCVTYTSL 613

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM----- 252
           +      G +  A  +Y  +    I     VY++    CS  GD E A  + ++M     
Sbjct: 614 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 673

Query: 253 -----------------------------TKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                                          +G++P+ + +  +I     AGK+     I
Sbjct: 674 ASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTI 733

Query: 284 LQEAKNQGISVGIISYSSL-MGACSNAK-----------------NWQKALELYEHMKSI 325
             E + +        +SSL M   +  K                 N  KAL L + + + 
Sbjct: 734 FVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAK 793

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
                 S+  A++  LC   +L + + +L +M   G
Sbjct: 794 SAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRG 829


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 109/480 (22%), Positives = 210/480 (43%), Gaps = 45/480 (9%)

Query: 43  ECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
           EC D+   M+ KG++   + ++A    F  + +++         F+L    T+ TFN+++
Sbjct: 187 ECFDM---MKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMI 243

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA------MFEN--VK 151
           +V       + A   +  ++  G+K +   Y T+I      G+V+       + +N  V+
Sbjct: 244 NVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVE 303

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           PD   + +LI+   + G ++ A  +L +M  E+  + P  +T   L+    N G + +A 
Sbjct: 304 PDSYTYGSLISGMCKGGKLEEASGILEKMK-EIGLL-PTAVTYNTLIDGYCNKGDLVKAF 361

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
                + +  I  T   Y + I+     G  + A  +  DM   G++PD +  + LI+  
Sbjct: 362 GYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGY 421

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G  + AF +  E  ++GI   +++Y+SL+   S     + A +L+E +      P +
Sbjct: 422 CRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDL 481

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
              NALI   C    L +   +L +M    + P+ +TY+ L+    R+  VE    LL +
Sbjct: 482 IMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKE 541

Query: 392 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAI 451
            K  G+ P+ + +  +I   S+R +    +N+                   A  +  E +
Sbjct: 542 MKRRGIRPDHISYNTLISGYSKRGD----IND-------------------AFTIRDEML 578

Query: 452 VAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGFGEYD 508
             G  PT+   + ++  L      D+ E L++ +   G++ D    S   SLI+G G+ D
Sbjct: 579 SIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPD---DSTYFSLIEGIGKVD 635



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 167/368 (45%), Gaps = 21/368 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAF 81
           +YN +I     +GR+     +L+ M+ +G+      Y +    +CK  K      I E  
Sbjct: 273 TYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKM 332

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +   L+P  T  T+N L+    +  D   AF     +    +      Y  LI      G
Sbjct: 333 KEIGLLP--TAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEG 390

Query: 142 KVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K+D    M ++     + PD + +N LI    + G   +AF++  EM ++   + P  +T
Sbjct: 391 KMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISK--GIQPTLVT 448

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +L+   +   ++  A ++++ I +        ++   I+     G+ + A ++  +M 
Sbjct: 449 YTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMD 508

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           K+ ++PDEV  + L+      GKVE A E+L+E K +GI    ISY++L+   S   +  
Sbjct: 509 KRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDIN 568

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A  + + M SI   PT+ T NALI  LC   Q     E+L +M S G+ P+  TY  L+
Sbjct: 569 DAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLI 628

Query: 374 VACERKDD 381
               + DD
Sbjct: 629 EGIGKVDD 636



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 155/392 (39%), Gaps = 65/392 (16%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           +VF+ LI AC +    D AF+    M  +   V P   T  A++       Q +    +Y
Sbjct: 167 IVFDMLIRACCELKRGDDAFECFDMMKEK--GVVPKIETFNAMLSLFLKLNQTETVWVLY 224

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             + +  IK T   + I IN   + G  + A      M   GV P+ V  + +I      
Sbjct: 225 AEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSR 284

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G+VE A  +L   KN+G+                                   +P   T 
Sbjct: 285 GRVEGARMVLDIMKNRGV-----------------------------------EPDSYTY 309

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            +LI+ +C G +L +   +L  MK +GL P  +TY+ L+     K D+        +   
Sbjct: 310 GSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVR 369

Query: 395 DGVIPNLVMFKCIIG--MCSRRYEKARTLNEHV---------LSFN---SGRPQIENKWT 440
             ++P +  +  +I       + ++A  + + +         +++N   +G  +  N   
Sbjct: 370 RAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKK 429

Query: 441 SLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSN 496
           +  L  + E I  G  PT+   + ++  L    ++    D+ E+++   G S D +    
Sbjct: 430 AFNL--HDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIRE-GASPDLIM--- 483

Query: 497 LCSLIDGF---GEYDPRAFSLLEEAASFGIVP 525
             +LIDG    G  D RAF+LL+E     IVP
Sbjct: 484 FNALIDGHCANGNLD-RAFALLKEMDKRNIVP 514


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/416 (21%), Positives = 189/416 (45%), Gaps = 22/416 (5%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN +I      G+      LL+ ++ +G +     +++    + K +K + EA   F+
Sbjct: 323 YAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRK-VDEALTLFE 381

Query: 86  LV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            +     P  ST+N+++ +   +   E A+ +   ++ AGL  +      ++    K+ K
Sbjct: 382 AMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNLLTVNIMVDRLCKAKK 441

Query: 143 VDA---MFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
            +    MFE        P+ V + +LI   G+ G VD A+ +   M    H  +P  +  
Sbjct: 442 FEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANP--VVY 499

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +L++     G+ +   +++K +++   +    +    ++C  + GD E   ++++D+  
Sbjct: 500 TSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKG 559

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G +PD    S LI     AG+      I    K QG ++   +Y++++     +    K
Sbjct: 560 YGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDK 619

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A E+ E MK  ++ PTV+T  ++I  L   D+L +   +  + KS G+  N I YS L+ 
Sbjct: 620 AYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLID 679

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS 430
              +   ++   ++L +  + G+ PN+  +  ++        KA  +NE ++ F S
Sbjct: 680 GFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALV----KAEEINEALICFQS 731



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 150/327 (45%), Gaps = 11/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P  S + +L+   A ++  E A ++LR +QE G +    L+TTL+   A+ G+V+   A+
Sbjct: 180 PAFSAYTVLIGAMAEARQPERALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALAL 239

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            + VK     PD V++N  I   G++G VD A+    E+ ++   + PD ++  +++   
Sbjct: 240 VDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQ--GLKPDDVSYTSMIWVL 297

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AG++  A E++  +           Y   I      G +E A  + D + ++G IP  
Sbjct: 298 CKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSV 357

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  ++++   G   KV+ A  +  EA  +       +Y+ ++     A   ++A  + + 
Sbjct: 358 VSFNSILTCLGKKRKVDEALTLF-EAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDE 416

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+   L P + T+N ++  LC   +     E+       G  PN++TY  L+    +K +
Sbjct: 417 MEHAGLFPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGN 476

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           V+    L     + G   N V++  +I
Sbjct: 477 VDDAYRLFENMLDTGHNANPVVYTSLI 503



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 167/386 (43%), Gaps = 50/386 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L ++G + +   L E+M   G      VY +   N     +  ++  + FK +      P
Sbjct: 471 LGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRK-EDGHKIFKEMNRRGCQP 529

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDAMF 147
            L+  N  M     + D E    +   ++  G   D + Y+ LI    K+G+     ++F
Sbjct: 530 DLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIF 589

Query: 148 ENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
             +K      D   +NA++    +SG +D+A++VL EM  +V  V P   T G+++   A
Sbjct: 590 HAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEM--KVKRVPPTVATYGSIIDGLA 647

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              ++DR  E Y +                                +++   KG+  + +
Sbjct: 648 ---KIDRLDEAYML--------------------------------FEEAKSKGIELNVI 672

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             S+LID  G  G+++ A+ IL+E   +G++  + +++SLM A   A+   +AL  ++ M
Sbjct: 673 VYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSM 732

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           K +K  P   T + LI  LC   +  K      +M+  GL PN +TY+ ++    +  ++
Sbjct: 733 KEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNI 792

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII 408
                L  + K +G  P+   F  +I
Sbjct: 793 TDACSLFERFKANGGTPDAASFNALI 818



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 98/467 (20%), Positives = 184/467 (39%), Gaps = 39/467 (8%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAM 146
           P +  +N+ +     + + + A++    ++  GLK D   YT++I    K+G++   + +
Sbjct: 250 PDIVLYNVCIDCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEEL 309

Query: 147 FENVKPDRVV-----FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F  ++ +R V     +N +I   G +G  + A+ +L ++        P  ++  +++   
Sbjct: 310 FGQMETERAVPCAYAYNTMIMGYGSAGQFENAYKLLDQLKE--RGCIPSVVSFNSILTCL 367

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               +VD A  +++ + K + +     Y I I+     G  E A  + D+M   G+ P+ 
Sbjct: 368 GKKRKVDEALTLFEAMKK-DAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPNL 426

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           + ++ ++D    A K E A+E+ + A  +G +   ++Y SL+       N   A  L+E+
Sbjct: 427 LTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFEN 486

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M             +LI       +     ++  +M   G  P+    +  +    +  D
Sbjct: 487 MLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGD 546

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE------------------KARTLNE 423
           VE G  +    K  G +P++  +  +I   ++  +                   AR  N 
Sbjct: 547 VEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNA 606

Query: 424 HVLSF-NSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLV 482
            V  F  SG+          A  V  E  V    PTV     ++  L      D    L 
Sbjct: 607 VVDGFCKSGK-------LDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLF 659

Query: 483 ENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCV 527
           E        L      SLIDGFG+      A+ +LEE    G+ P V
Sbjct: 660 EEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNV 706



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 115/251 (45%), Gaps = 3/251 (1%)

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
           L++A  ++  +D A  V+A M        P       L+ A A A Q +RA E+ + + +
Sbjct: 153 LVSALVRTRRLDDAERVIAAMRR--LKFRPAFSAYTVLIGAMAEARQPERALELLRQMQE 210

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
              +    ++T  +   ++ G  E A ++ D++    + PD V  +  ID  G AG V+ 
Sbjct: 211 VGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDM 270

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A++   E K+QG+    +SY+S++     A    +A EL+  M++ +  P     N +I 
Sbjct: 271 AWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIM 330

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
                 Q     ++L  +K  G  P+ ++++ +L    +K  V+  L L    K+D   P
Sbjct: 331 GYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEAMKKDAE-P 389

Query: 400 NLVMFKCIIGM 410
           N   +  II M
Sbjct: 390 NSSTYNIIIDM 400



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 134/297 (45%), Gaps = 23/297 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-----KLVPN 89
           L + G+  E   +   M+++G     + Y+A     CKS K + +A+        K VP 
Sbjct: 576 LTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGK-LDKAYEVLEEMKVKRVP- 633

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           PT++T+  ++   A     + A+ +    +  G++ +  +Y++LI    K G++D  +  
Sbjct: 634 PTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLI 693

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALM 198
                 + + P+   +N+L+ A  ++  ++ A   F  + EM        P+  T   L+
Sbjct: 694 LEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKC-----SPNTYTYSILI 748

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                  + ++A   ++ + K  +      YT  I   ++ G+   ACS+++     G  
Sbjct: 749 NGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANGGT 808

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           PD    +ALI+   HA +   A+ + +E + +G  + + +  SL+ A + A+  ++A
Sbjct: 809 PDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISLLDALNKAECLEQA 865


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/374 (22%), Positives = 164/374 (43%), Gaps = 13/374 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           L    R    +  L +M  + +   D +       +CK  K   A++  FR  +      
Sbjct: 431 LCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGAN 490

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF---- 147
           L T N L+     + + + A ++L+ + E G   D   Y TLI+ C K GKV+  F    
Sbjct: 491 LVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRG 550

Query: 148 ----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
               + ++PD   +N LI    + G +D A ++  E  +    + P+  T G ++     
Sbjct: 551 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSR--DLVPNVYTYGVMIDGYCK 608

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           A +++   +++  +   N++    VY   I    + G+   A  ++DDM  KG+ P    
Sbjct: 609 ADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTAT 668

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            S+LI    + G++E A  ++ E + +G+   ++ Y++L+G         K + + + M 
Sbjct: 669 YSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMS 728

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           S  + P   T   +I        +    ++L +M   G+ P+T+TY++L     ++  +E
Sbjct: 729 SYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIE 788

Query: 384 VGLMLLSQAKEDGV 397
            G  +     ++G+
Sbjct: 789 EGFKICDYMSQEGL 802



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 170/393 (43%), Gaps = 26/393 (6%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVPN 89
           I Q   +ECI  LE+M  +G       +      +C + +  + A RF +      + PN
Sbjct: 399 IGQMEQAECI--LEEMLSRGFSINPGAFTTIIHWLCMNSR-FESALRFLREMLLRNMRPN 455

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
             L T  ++  +C   K S+      RL+ E G  A+      LI    K+G +      
Sbjct: 456 DGLLT-TLVGGLCKEGKHSDAVELWFRLL-EKGFGANLVTTNALIHGLCKTGNMQEAVRL 513

Query: 150 VKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +K         D++ +N LI+ C + G V+  F +  EM  +   ++PD  T   L+   
Sbjct: 514 LKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQ--GIEPDTFTYNLLIHGM 571

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              G++D A  ++      ++   P VYT  + I+   +    E    ++ ++  + +  
Sbjct: 572 CRIGKLDEAVNLWNECKSRDL--VPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLEL 629

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V  + LI      G    AF++  + +++GI     +YSSL+    N    + A  L 
Sbjct: 630 NSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLI 689

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M+   L P V    ALI   C   Q+ K + VL +M S  + PN ITY++++    + 
Sbjct: 690 DEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKS 749

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            D++    LL +    G++P+ V +  +  G C
Sbjct: 750 GDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFC 782



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 115/519 (22%), Positives = 216/519 (41%), Gaps = 29/519 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVP--- 88
           N   + G++ + I L  DME+ G+      Y+     +CK    + EAFRF  K+V    
Sbjct: 254 NAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCK-HGNLDEAFRFKEKMVKDGV 312

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
           N TL T+++L++     +    A  VL+   E G   +  +Y TLI    K G +     
Sbjct: 313 NATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALR 372

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              D + + + P+ V  N++I    + G +++A  +L EM +    ++P   T   +   
Sbjct: 373 IRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTT-IIHWL 431

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           C N+      R + +M+ + N++    + T  +    + G    A  ++  + +KG   +
Sbjct: 432 CMNSRFESALRFLREMLLR-NMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGAN 490

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  +ALI      G ++ A  +L++   +G  +  I+Y++L+  C      ++  +L  
Sbjct: 491 LVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRG 550

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    ++P   T N LI  +C   +L + + + ++ KS  L PN  TY +++    + D
Sbjct: 551 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKAD 610

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 440
            +E G  L ++     +  N V++  +I    R          H    + G P     ++
Sbjct: 611 KIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYS 670

Query: 441 SL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVS 488
           SL            A  +  E    G +P V   + ++G        D    +++ +   
Sbjct: 671 SLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSY 730

Query: 489 ADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
                +     +IDG+ +      A  LL E    GIVP
Sbjct: 731 DIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVP 769



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 164/399 (41%), Gaps = 58/399 (14%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           VY  +F NV       + A   F+ + N    PT+ T   L+S    + + E ++ V   
Sbjct: 183 VYCTQFRNV-----GFRNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFET 237

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGA 169
           +++ G+  D  L++T I    K GKV+   +         V P+ V +N LI    + G 
Sbjct: 238 MRQ-GVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGN 296

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D AF    +M  +   V+   IT   L+       + + A  V K   +        VY
Sbjct: 297 LDEAFRFKEKMVKD--GVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVY 354

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
              I+   + G+   A  +  DM  KG+ P+ V L+++I      G++E A  IL+E  +
Sbjct: 355 NTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLS 414

Query: 290 QGISVGIISYSSLM------------------------------------GACSNAKNWQ 313
           +G S+   ++++++                                    G C   K+  
Sbjct: 415 RGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKH-S 473

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A+EL+  +        + T NALI  LC    + + + +L  M   G   + ITY+ L+
Sbjct: 474 DAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLI 533

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             C ++  VE G  L  +  + G+ P+   +  +I GMC
Sbjct: 534 SGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMC 572



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/396 (21%), Positives = 178/396 (44%), Gaps = 25/396 (6%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAF 81
           YN LI    + G + + + +  DM  KG+       ++     CK      ++  ++E  
Sbjct: 354 YNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEML 413

Query: 82  -RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            R F + P    +  + L   C +S+  E A + LR +    ++ +  L TTL+    K 
Sbjct: 414 SRGFSINPGAFTTIIHWL---CMNSR-FESALRFLREMLLRNMRPNDGLLTTLVGGLCKE 469

Query: 141 GK----VDAMF----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           GK    V+  F    +    + V  NALI    ++G +  A  +L +M      +D   I
Sbjct: 470 GKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLD--KI 527

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+  C   G+V+   ++   + K  I+     Y + I+   + G  + A +++++ 
Sbjct: 528 TYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNEC 587

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             + ++P+      +ID    A K+E   ++  E   Q + +  + Y++L+ A     N 
Sbjct: 588 KSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNT 647

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            +A +L++ M+S  + PT +T ++LI  +C+  ++     ++ +M+  GL PN + Y+ L
Sbjct: 648 VEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTAL 707

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +    +   ++  + +L +     + PN + +  +I
Sbjct: 708 IGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMI 743



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 8/245 (3%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY--TIAINCCSQTGDWEF 244
           V P   T   L+ +   A +++++  V++ + +     +P+VY  + AIN   + G  E 
Sbjct: 208 VFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ---GVSPDVYLFSTAINAFCKGGKVED 264

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  ++ DM K GV P+ V  + LI      G ++ AF   ++    G++  +I+YS L+ 
Sbjct: 265 AIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLIN 324

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                + + +A  + +        P     N LI   C    L   + +  DM S G+ P
Sbjct: 325 GLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINP 384

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA-RTL 421
           N++T + ++    +   +E    +L +    G   N   F  II  +C + R+E A R L
Sbjct: 385 NSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFL 444

Query: 422 NEHVL 426
            E +L
Sbjct: 445 REMLL 449


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 177/382 (46%), Gaps = 26/382 (6%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106
           L  DM R  L      ++    ++C + K  + A    + +P P   T+N +++   S  
Sbjct: 141 LFADMFRLRLPLCTTTFNIMLRHLCSAGKPAR-ALELLRQMPRPNAVTYNTVIAGFCSRG 199

Query: 107 DSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKVDAMFE---------NVKPDRVV 156
             + A  ++R ++E  G+  +   Y T+I+   K G+VD   +          VKP+ V+
Sbjct: 200 RVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVM 259

Query: 157 FNALITACGQSGAVDRAF---DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           +NALI      G +D A    D + E    +        T   L+ A    G   R  E 
Sbjct: 260 YNALIGGYCDQGKLDTALLYRDRMVERGVAMTVA-----TYNLLVHALFMDG---RGTEA 311

Query: 214 YKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           Y+++ +   KG       Y I IN   + G+ + A  ++++M+++GV    V  ++LI  
Sbjct: 312 YELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYA 371

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G+V+   ++  EA  +GI   ++ Y++L+ + S + N  +A E+   M+  ++ P 
Sbjct: 372 LSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPD 431

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
             T N L+  LC   ++ +  +++ +M   G+ P+ +TY+ L+     K DV+  L + +
Sbjct: 432 DVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSMKGDVKDALRIRN 491

Query: 391 QAKEDGVIPNLVMFKCII-GMC 411
           +    G  P L+ +  +I G+C
Sbjct: 492 EMMNKGFNPTLLTYNALIQGLC 513



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 163/391 (41%), Gaps = 36/391 (9%)

Query: 10  QFPYPNGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDM-ERKGLLDMDKVYH 64
           Q P PN               +YN +I     +GR+   +D++ +M ER G+      Y 
Sbjct: 179 QMPRPNAV-------------TYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYG 225

Query: 65  ARFFNVCKSQKAIKEAFRFF-----KLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLV 118
                 CK  + + EA + F     K    P    +N L+   C   K         R+V
Sbjct: 226 TVISGWCKVGR-VDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMV 284

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP--------DRVVFNALITACGQSGAV 170
            E G+      Y  L+      G+    +E V+         D   +N LI    + G V
Sbjct: 285 -ERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNV 343

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
            +A ++   M+     V    +T  +L+ A +  GQV    +++    +  I+    +Y 
Sbjct: 344 KKALEIFENMSR--RGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYN 401

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             IN  S +G+ + A  +  +M KK + PD+V  + L+      G+V+ A +++ E   +
Sbjct: 402 ALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKR 461

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           GI   +++Y++L+   S   + + AL +   M +    PT+ T NALI  LC   Q    
Sbjct: 462 GIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDA 521

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDD 381
             ++ +M   G+ P+  TY  L+     +D+
Sbjct: 522 ENMVKEMVENGITPDDSTYISLIEGLTTEDE 552



 Score = 41.6 bits (96), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 11/158 (6%)

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           +  +    K+  + +   S   L+ A  +A     A  L+  M  ++L    +T N ++ 
Sbjct: 107 SLRLYSRMKSLSLPISTASLHPLLSALPSAP----AFALFADMFRLRLPLCTTTFNIMLR 162

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVI 398
            LC   +  + +E+L  M      PN +TY+ ++     +  V+  L ++ + +E  G+ 
Sbjct: 163 HLCSAGKPARALELLRQMPR----PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIA 218

Query: 399 PNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQ 434
           PN   +  +I G C   R ++A  + + +L+    +P+
Sbjct: 219 PNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPE 256


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 172/393 (43%), Gaps = 19/393 (4%)

Query: 35  LIRQGRISECIDLLEDMERK------GLLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLV 87
           L++ G+  + ID+   M+ K       ++    + H   ++VC   +  + AF       
Sbjct: 312 LVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIH--LYSVCGQIENCQTAFNTMLAEG 369

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-- 145
             P + ++N L+   AS    + AF V   +++ G   D   YT+L+    KSGK +   
Sbjct: 370 LKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAM 429

Query: 146 -MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            +FE     + KP+ V +NALI A G  G +  A ++L EM  E + V P+ ++I  L+ 
Sbjct: 430 KVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEM--ERNGVQPNIVSICTLLA 487

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           AC   GQ  + + V        IK     Y  AI      G+++ A S+Y  M  K V P
Sbjct: 488 ACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKP 547

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  + LI       K   A   L E  +  I +    YSS++ A S      +A  ++
Sbjct: 548 DPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMF 607

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             MK +  +P V T  A+I A    +   K   +  +M++  + P++I  S L+ A  + 
Sbjct: 608 TKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKG 667

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
                 L+L    +E  +  N   F  ++  CS
Sbjct: 668 GQPAKVLVLAEFMREKKIPFNNSSFFEMVSACS 700



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 183/411 (44%), Gaps = 23/411 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G   E +++ + M   G+   D V H    +  K      +   +F+L
Sbjct: 234 TYNNLINACGSSGNWKEALNVCKKMTENGV-GPDLVTHNIVLSAYKRGNQYSKVLSYFEL 292

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE--AGLKADCKLYTTLITTCAKS 140
           +      P  +T N+++        +  A  +   ++E  +    D   +TT+I   +  
Sbjct: 293 MKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVC 352

Query: 141 GKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+++         + E +KP+ V +NALI A    G    AF V  E+    +   PD +
Sbjct: 353 GQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKK--NGFHPDVV 410

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +  +L+ A   +G+ ++A +V++++ + + K     Y   I+     G    A  +  +M
Sbjct: 411 SYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEM 470

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            + GV P+ V +  L+   G  G+      +L  A+ +GI +   +Y+S +G+  +   +
Sbjct: 471 ERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEY 530

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            KAL LY  M++ K+KP   T N LI+  C   +  + +  L +M  L +  +   YS +
Sbjct: 531 DKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSV 590

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM--CSRRYEKARTL 421
           + A  ++  V     + ++ K  G  P+++ +  +I     +  +EKA  L
Sbjct: 591 ICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASAL 641



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 162/392 (41%), Gaps = 51/392 (13%)

Query: 79  EAFRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           + FR+ K   N       +NM++ + A     + A  +   +Q+   K D + Y  LI  
Sbjct: 147 QVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINA 206

Query: 137 CAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             ++G+         D +   + P R  +N LI ACG SG    A +V  +M    + V 
Sbjct: 207 HGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTE--NGVG 264

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD +T   ++ A     Q  +    ++++   NI+       I I C  + G    A  +
Sbjct: 265 PDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDI 324

Query: 249 YDDMTKK-------------------------------------GVIPDEVFLSALIDFA 271
           ++ M +K                                     G+ P+ V  +ALI   
Sbjct: 325 FNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAY 384

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G  + AF +  E K  G    ++SY+SL+ A   +   +KA++++E M+    KP +
Sbjct: 385 ASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNL 444

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            + NALI A      L + +E+L +M+  G+ PN ++   LL AC R         +LS 
Sbjct: 445 VSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSA 504

Query: 392 AKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 421
           A+  G+  N   +   IG  +    Y+KA +L
Sbjct: 505 AELRGIKLNTTAYNSAIGSYLSVGEYDKALSL 536



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 118/258 (45%), Gaps = 3/258 (1%)

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           R  F  LI    Q G+++ +  V   M  + +    + I    +++  A    VD+AR +
Sbjct: 126 RKNFPLLIREITQIGSLEHSVQVFRWMKNQKNYCARNDI-YNMMIRLHARHNIVDQARGL 184

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           +  + K+  K   E Y   IN   + G W +A ++ DDM +  + P     + LI+  G 
Sbjct: 185 FFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGS 244

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           +G  + A  + ++    G+   +++++ ++ A      + K L  +E MK   ++P  +T
Sbjct: 245 SGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTT 304

Query: 334 MNALITALCDGDQLPKTMEVLSDMKS-LGLC-PNTITYSILLVACERKDDVEVGLMLLSQ 391
           +N +I  L    Q  K +++ + MK     C P+ +T++ ++        +E      + 
Sbjct: 305 LNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNT 364

Query: 392 AKEDGVIPNLVMFKCIIG 409
              +G+ PN+V +  +IG
Sbjct: 365 MLAEGLKPNIVSYNALIG 382



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 88/402 (21%), Positives = 160/402 (39%), Gaps = 52/402 (12%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            L SYN LI     +G ++E +++L +MER G+                           
Sbjct: 443 NLVSYNALIDAYGSKGLLTEAVEILHEMERNGV--------------------------- 475

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 P + +   L++ C           VL   +  G+K +   Y + I +    G+ 
Sbjct: 476 -----QPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEY 530

Query: 144 DAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D           + VKPD V +N LI+ C +      A   L EM     P+  +     
Sbjct: 531 DKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKE--VYS 588

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +++ A +  GQV  A  ++  +     +     YT  I+      +WE A +++ +M   
Sbjct: 589 SVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETD 648

Query: 256 GVIPDEVFLSALI---DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            V PD +  S+L+   +  G   KV    E ++E K   I     S+  ++ ACS  + W
Sbjct: 649 DVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKK---IPFNNSSFFEMVSACSLLREW 705

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           ++ + L + M+      ++  +N L+  L    ++   M++   + + G   N  TYSIL
Sbjct: 706 REIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSIL 765

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           L       +    + +L   +E G+ P++ M++ I      R
Sbjct: 766 LKNLLAAGNWRKYIEVLQWMEEAGLQPSVGMYRSISSFAQNR 807



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A  L+  M+  + KP   T NALI A     Q    M ++ DM    + P+  TY+ L+
Sbjct: 180 QARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLI 239

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG-R 432
            AC    + +  L +  +  E+GV P+LV    ++    R  + ++ L+   L   +  R
Sbjct: 240 NACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIR 299

Query: 433 PQIENKWTSLALMVY 447
           P      T+L +++Y
Sbjct: 300 PDT----TTLNIVIY 310


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 173/398 (43%), Gaps = 19/398 (4%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y+ LIR     GR+     +L+ M + G +  D + +         Q   +EAF     
Sbjct: 385 TYDNLIRGLCKLGRMGRASRILKQMTKIGYM-ADTMTYNLVIEGHLRQHNKEEAFLLLNE 443

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     +P + T++++++      +SE A  +L  +   GLK +  +Y  LI+   + G 
Sbjct: 444 MRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGS 503

Query: 143 VD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
                        EN+ PD   +N+LI      G +D A +   EM  +     P+  T 
Sbjct: 504 FSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEK--GFQPNDFTY 561

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           G L+   + AG +++A ++   +    +     +Y   +    ++ + E   S    M +
Sbjct: 562 GGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLE 621

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           KG++PD      +I     +G ++AA  +L   +  G+    + Y SL+     A + +K
Sbjct: 622 KGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEK 681

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A+ L + M    ++P +S  NALI   C  D +     + + +   GL PN +TY+ L+ 
Sbjct: 682 AVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLID 741

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
              +  D+   + L ++   +GV P+  ++  +   CS
Sbjct: 742 GYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCS 779



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 137/323 (42%), Gaps = 10/323 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM------- 146
           T+N L+     +   E AF   + +++ GL  D   Y  +I    K G+ D         
Sbjct: 280 TYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEM 339

Query: 147 -FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               + P+ VV++ LI    + G  D AF ++ EM+A    V P+ IT   L++     G
Sbjct: 340 SCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAA--GVQPNKITYDNLIRGLCKLG 397

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++ RA  + K + K         Y + I    +  + E A  + ++M K G+ P+    S
Sbjct: 398 RMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYS 457

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            +I+     G+ E A  +L++    G+      Y+ L+       ++  A E  + M   
Sbjct: 458 IIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRE 517

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            L P +   N+LI  L +  ++ + +E   +M   G  PN  TY  L+       ++E  
Sbjct: 518 NLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKA 577

Query: 386 LMLLSQAKEDGVIPNLVMFKCII 408
             LL Q    G+ PN  ++  I+
Sbjct: 578 EQLLHQMLNSGLNPNDFIYAQIL 600



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 137/331 (41%), Gaps = 46/331 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P+L   N L+     +   +  ++V   ++ AG+  D   Y+TLI    K   +++  + 
Sbjct: 206 PSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKV 265

Query: 150 VKPDR--------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           V+  R        V +N LI    ++GA++ AF    EM  E + + PD  T GA++   
Sbjct: 266 VEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEM--EDYGLVPDGFTYGAIINGL 323

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+ D+A+                                    + D+M+  G++P+ 
Sbjct: 324 CKRGRPDQAK-----------------------------------CLLDEMSCAGLMPNV 348

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  S LID     G  + AF+I++E    G+    I+Y +L+          +A  + + 
Sbjct: 349 VVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQ 408

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M  I       T N +I          +   +L++M+  G+ PN  TYSI++    +  +
Sbjct: 409 MTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGE 468

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            E    LL Q   DG+ PN  ++  +I G C
Sbjct: 469 SERASGLLEQMIADGLKPNAFVYAPLISGYC 499



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/351 (21%), Positives = 153/351 (43%), Gaps = 20/351 (5%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKA 76
           +++  L+ YN LI      G++ E I+  ++M  KG    D  Y         +   +KA
Sbjct: 518 NLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKA 577

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            +   +      NP    +  ++     S + E     L+ + E GL  D +LY  +I  
Sbjct: 578 EQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHN 637

Query: 137 CAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
            + SG + A            + PD +++ +LI+   ++  +++A  +L EM  +   ++
Sbjct: 638 LSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKK--GIE 695

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P      AL+     +  +  AR ++  I    +      YT  I+   + GD   A  +
Sbjct: 696 PGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDL 755

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS 307
           Y++M  +GV PD    S L     ++G ++ A  I +E   +G ++ I S+++L+ G C 
Sbjct: 756 YNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAI-ISSFNTLVHGFCK 814

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
             K  Q+ ++    M    + P++ T+  ++  L +  +L +   +  +++
Sbjct: 815 RGK-LQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQ 864



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 114/243 (46%), Gaps = 2/243 (0%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + PD  T   L++A      ++ A++V + + +         Y   I    + G  E A 
Sbjct: 239 ISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAF 298

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
               +M   G++PD     A+I+     G+ + A  +L E    G+   ++ YS+L+   
Sbjct: 299 GYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGF 358

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
               N  +A ++ + M +  ++P   T + LI  LC   ++ +   +L  M  +G   +T
Sbjct: 359 MRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADT 418

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEH 424
           +TY++++    R+ + E   +LL++ ++ G+ PN+  +  II G+C     E+A  L E 
Sbjct: 419 MTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQ 478

Query: 425 VLS 427
           +++
Sbjct: 479 MIA 481



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 80/183 (43%)

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
           P V  + ++   +TG       V   M   G+ P     + L+     A  ++  +++  
Sbjct: 173 PVVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRG 232

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
             +  GIS  + +YS+L+ A    ++ + A ++ E M+       V T N LI  LC   
Sbjct: 233 FMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAG 292

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
            + +      +M+  GL P+  TY  ++    ++   +    LL +    G++PN+V++ 
Sbjct: 293 AIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYS 352

Query: 406 CII 408
            +I
Sbjct: 353 TLI 355



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 105/265 (39%), Gaps = 29/265 (10%)

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V L  L+D     G+V    E++   K+ G++  +   + L+     A       ++   
Sbjct: 174 VVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGF 233

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+   + P V T + LI A C    L    +V+ +M+  G   N +TY+ L+    R   
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGA 293

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 440
           +E       + ++ G++P+   +  II G+C R                 GRP       
Sbjct: 294 IEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKR-----------------GRPD------ 330

Query: 441 SLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNL 497
             A  +  E   AG +P V V S ++       NAD   ++V+ +   GV  + +   NL
Sbjct: 331 -QAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNL 389

Query: 498 CSLIDGFGEYDPRAFSLLEEAASFG 522
              +   G    RA  +L++    G
Sbjct: 390 IRGLCKLGRMG-RASRILKQMTKIG 413



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/310 (20%), Positives = 120/310 (38%), Gaps = 50/310 (16%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H Y+     G + +   LL  M   GL   D +Y        KS    K +     ++ 
Sbjct: 565 IHGYSM---AGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLE 621

Query: 89  N---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS----- 140
               P    + +++   +SS   + A  VL ++++ GL  D  +Y +LI+   K+     
Sbjct: 622 KGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEK 681

Query: 141 --GKVDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
             G +D M +  ++P    +NALI    +S  +  A ++   +  +  P  P+ +T   L
Sbjct: 682 AVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLP--PNCVTYTTL 739

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG- 256
           +     AG +  A ++Y  +    +     VY++    CS +GD + A  + ++M  +G 
Sbjct: 740 IDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGY 799

Query: 257 ---------------------------------VIPDEVFLSALIDFAGHAGKVEAAFEI 283
                                            ++P  + +  ++   G AGK+  A  I
Sbjct: 800 AIISSFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTI 859

Query: 284 LQEAKNQGIS 293
             E + +  S
Sbjct: 860 FVELQQKNAS 869


>gi|357509703|ref|XP_003625140.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500155|gb|AES81358.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 855

 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 199/436 (45%), Gaps = 39/436 (8%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAM 146
           +NM++ + A    ++ A  +   +Q+   K D + Y  LI    ++G+         D +
Sbjct: 153 YNMMIRLHARHNRTDQARGLFFEMQKCRCKPDAETYNALINAHGRAGQWRWAMNIMDDML 212

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              + P R  +N LI ACG SG    A +V  +M    + V PD +T   ++ A  +  Q
Sbjct: 213 RAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTD--NGVGPDLVTHNIMLTAFKSGTQ 270

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIPDEVFL 264
             +A   +++I   +I+     + I I+C  +   ++ A  +++ M +K     PD V  
Sbjct: 271 YSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTF 330

Query: 265 SALIDF---AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +++I      GH    EAAF ++     +G+   I+SY++L+GA +      +AL+++  
Sbjct: 331 TSMIHLYSVCGHIENCEAAFNMMLA---EGLKPNIVSYNALLGAYAARGMENEALQVFNE 387

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +K    +P V +  +L+ A     +  K  E+   +K   L PN ++Y+ L+ A      
Sbjct: 388 IKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGL 447

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 441
           +E  + +L + ++D + PN+V    ++  C R  +K +   + VLS        E +   
Sbjct: 448 LEDAIEILREMEQDKIHPNVVSICTLLAACGRCGQKVKI--DTVLS------AAEMRGIK 499

Query: 442 LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLI 501
           L  + Y  AI  G+   V    K +      YN+ +R++ +++  V+   L     C  +
Sbjct: 500 LNTVAYNSAI--GSYINVGEYDKAIDL----YNS-MRKKKIKSDSVTYTVLISG--CCKM 550

Query: 502 DGFGEYDPRAFSLLEE 517
             FGE    A S +EE
Sbjct: 551 SKFGE----ALSFMEE 562



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 191/422 (45%), Gaps = 33/422 (7%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G   E +++ + M   G+   D V H       KS     +A  +F+L
Sbjct: 222 TYNNLINACGSSGNWKEALNVCKKMTDNGV-GPDLVTHNIMLTAFKSGTQYSKALSYFEL 280

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLI---T 135
           +      P  +T N+++      K  + A  +   ++E   K++C      +T++I   +
Sbjct: 281 IKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEK--KSECHPDVVTFTSMIHLYS 338

Query: 136 TCAKSGKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
            C      +A F     E +KP+ V +NAL+ A    G  + A  V  E+  + +   PD
Sbjct: 339 VCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEI--KQNGFRPD 396

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            ++  +L+ A   + +  +ARE++KMI + N+K     Y   I+     G  E A  +  
Sbjct: 397 VVSYTSLLNAYGRSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILR 456

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M +  + P+ V +  L+   G  G+      +L  A+ +GI +  ++Y+S +G+  N  
Sbjct: 457 EMEQDKIHPNVVSICTLLAACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVG 516

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            + KA++LY  M+  K+K    T   LI+  C   +  + +  + +M  L L  +   YS
Sbjct: 517 EYDKAIDLYNSMRKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYS 576

Query: 371 ILLVACERKDDVEVGLMLLSQA-----KEDGVIPNLVMFKCIIGM--CSRRYEKARTLNE 423
            ++ A  ++    +G ++ +++     K  G  P++V +  ++     + ++EK   L E
Sbjct: 577 SIICAYSKQASA-LGQIIEAESTFNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFE 635

Query: 424 HV 425
            +
Sbjct: 636 EM 637



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 145/329 (44%), Gaps = 45/329 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDA 145
           P+ ST+N L++ C SS + + A  V + + + G+  D   +  ++T   KSG    K  +
Sbjct: 218 PSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTA-FKSGTQYSKALS 276

Query: 146 MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            FE     +++PD    N +I    +    D+A D+   M  +     PD +T  +    
Sbjct: 277 YFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTS---- 332

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                          MIH Y++ G  E      NC           + ++ M  +G+ P+
Sbjct: 333 ---------------MIHLYSVCGHIE------NC----------EAAFNMMLAEGLKPN 361

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  +AL+      G    A ++  E K  G    ++SY+SL+ A   ++  QKA E+++
Sbjct: 362 IVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAREIFK 421

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            +K   LKP + + NALI A      L   +E+L +M+   + PN ++   LL AC R  
Sbjct: 422 MIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCG 481

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
                  +LS A+  G+  N V +   IG
Sbjct: 482 QKVKIDTVLSAAEMRGIKLNTVAYNSAIG 510



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 169/396 (42%), Gaps = 58/396 (14%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFF---KLV 87
           L++  +  + +D+   M E+K     D V        ++VC   +  + AF       L 
Sbjct: 300 LVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLK 359

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           PN  + ++N L+   A+      A QV   +++ G + D   YT+L+    +S K     
Sbjct: 360 PN--IVSYNALLGAYAARGMENEALQVFNEIKQNGFRPDVVSYTSLLNAYGRSRKPQKAR 417

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           E        N+KP+ V +NALI A G +G ++ A ++L EM  E   + P+ ++I  L+ 
Sbjct: 418 EIFKMIKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREM--EQDKIHPNVVSICTLLA 475

Query: 200 ACA-----------------------------------NAGQVDRAREVYKMIHKYNIKG 224
           AC                                    N G+ D+A ++Y  + K  IK 
Sbjct: 476 ACGRCGQKVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKKKIKS 535

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGHA---GKVEAA 280
               YT+ I+ C +   +  A S  ++M   K  +  EV+ S +  ++  A   G++  A
Sbjct: 536 DSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASALGQIIEA 595

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
                  K+ G S  +++Y++++ A + A+ W+K   L+E M+   +K       AL+ A
Sbjct: 596 ESTFNLMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDTIACAALMRA 655

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
              G Q  + + +   M+   +  +   +  ++ AC
Sbjct: 656 FNKGGQPGRVLSLAQSMREKDIPLSDTIFFEMVSAC 691



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 126/284 (44%), Gaps = 7/284 (2%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           ++N +I    +    D+A  +  EM  +     PD  T  AL+ A   AGQ   A  +  
Sbjct: 152 IYNMMIRLHARHNRTDQARGLFFEM--QKCRCKPDAETYNALINAHGRAGQWRWAMNIMD 209

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            + +  I  +   Y   IN C  +G+W+ A +V   MT  GV PD V  + ++       
Sbjct: 210 DMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTDNGVGPDLVTHNIMLTAFKSGT 269

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK--PTVST 333
           +   A    +  K   I     +++ ++      K + KA++++  MK  K +  P V T
Sbjct: 270 QYSKALSYFELIKGTHIRPDTTTHNIIIHCLVKLKQYDKAVDIFNSMKEKKSECHPDVVT 329

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
             ++I        +       + M + GL PN ++Y+ LL A   +      L + ++ K
Sbjct: 330 FTSMIHLYSVCGHIENCEAAFNMMLAEGLKPNIVSYNALLGAYAARGMENEALQVFNEIK 389

Query: 394 EDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLSFNSGRPQI 435
           ++G  P++V +  ++     SR+ +KAR + + ++  N+ +P I
Sbjct: 390 QNGFRPDVVSYTSLLNAYGRSRKPQKAREIFK-MIKRNNLKPNI 432



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 152/348 (43%), Gaps = 42/348 (12%)

Query: 197 LMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           L++     G ++    V+  M ++ N     ++Y + I   ++    + A  ++ +M K 
Sbjct: 120 LIRELTQRGSIEHCNLVFSWMKNQKNYCARTDIYNMMIRLHARHNRTDQARGLFFEMQKC 179

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
              PD    +ALI+  G AG+   A  I+ +     I     +Y++L+ AC ++ NW++A
Sbjct: 180 RCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEA 239

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-- 373
           L + + M    + P + T N ++TA   G Q  K +     +K   + P+T T++I++  
Sbjct: 240 LNVCKKMTDNGVGPDLVTHNIMLTAFKSGTQYSKALSYFELIKGTHIRPDTTTHNIIIHC 299

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM---------CSRRYEK--ARTLN 422
           +   ++ D  V +    + K+    P++V F  +I +         C   +    A  L 
Sbjct: 300 LVKLKQYDKAVDIFNSMKEKKSECHPDVVTFTSMIHLYSVCGHIENCEAAFNMMLAEGLK 359

Query: 423 EHVLSFNS-----GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADI 477
            +++S+N+         +EN+    AL V+ E    G  P V   + +L       NA  
Sbjct: 360 PNIVSYNALLGAYAARGMENE----ALQVFNEIKQNGFRPDVVSYTSLL-------NAYG 408

Query: 478 RERLVENLGVSADALKRSNL-------CSLIDGFGEYDPRAFSLLEEA 518
           R R  +        +KR+NL        +LID +G     +  LLE+A
Sbjct: 409 RSRKPQKAREIFKMIKRNNLKPNIVSYNALIDAYG-----SNGLLEDA 451



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/400 (20%), Positives = 163/400 (40%), Gaps = 62/400 (15%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN L+     +G  +E + +  ++++ G    D V +    N     +  ++A   FK+
Sbjct: 364 SYNALLGAYAARGMENEALQVFNEIKQNGFRP-DVVSYTSLLNAYGRSRKPQKAREIFKM 422

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141
           +      P + ++N L+    S+   E A ++LR +++  +  +     TL+  C + G 
Sbjct: 423 IKRNNLKPNIVSYNALIDAYGSNGLLEDAIEILREMEQDKIHPNVVSICTLLAACGRCGQ 482

Query: 142 --KVD-----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
             K+D     A    +K + V +N+ I +    G  D+A D+   M  +   +  D +T 
Sbjct: 483 KVKIDTVLSAAEMRGIKLNTVAYNSAIGSYINVGEYDKAIDLYNSMRKK--KIKSDSVTY 540

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----GDWEFACSVYD 250
             L+  C    +   A    + +    +  + EVY+  I   S+     G    A S ++
Sbjct: 541 TVLISGCCKMSKFGEALSFMEEMMHLKLPMSKEVYSSIICAYSKQASALGQIIEAESTFN 600

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM------- 303
            M   G  PD V  +A++D    A K E  + + +E +   + +  I+ ++LM       
Sbjct: 601 LMKSLGCSPDVVTYTAMLDAYNAAEKWEKLYALFEEMEENDVKLDTIACAALMRAFNKGG 660

Query: 304 ----------------------------GACSNAKNWQKALELYEHMKSIKLKPTVST-- 333
                                        AC    +W+ A+++ ++M+     P +S+  
Sbjct: 661 QPGRVLSLAQSMREKDIPLSDTIFFEMVSACGLLHDWKTAVDMIKYMEPS--LPVISSGC 718

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +N  + +L    ++   +++   M + G   N  TYSILL
Sbjct: 719 LNLFLNSLGKSGKIEIMLKLFFKMLASGAEVNFNTYSILL 758



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 113/284 (39%), Gaps = 26/284 (9%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           I  G   + IDL   M RK  +  D V +    + C       EA  F + + +  L   
Sbjct: 513 INVGEYDKAIDLYNSM-RKKKIKSDSVTYTVLISGCCKMSKFGEALSFMEEMMHLKLPMS 571

Query: 96  NMLMS--VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPD 153
             + S  +CA SK +    Q++        +A+          C+             PD
Sbjct: 572 KEVYSSIICAYSKQASALGQII--------EAESTFNLMKSLGCS-------------PD 610

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
            V + A++ A   +   ++ + +  EM  E + V  D I   ALM+A    GQ  R   +
Sbjct: 611 VVTYTAMLDAYNAAEKWEKLYALFEEM--EENDVKLDTIACAALMRAFNKGGQPGRVLSL 668

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
            + + + +I  +  ++   ++ C    DW+ A  +   M     +     L+  ++  G 
Sbjct: 669 AQSMREKDIPLSDTIFFEMVSACGLLHDWKTAVDMIKYMEPSLPVISSGCLNLFLNSLGK 728

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
           +GK+E   ++  +    G  V   +YS L+    ++ NW+K LE
Sbjct: 729 SGKIEIMLKLFFKMLASGAEVNFNTYSILLKNLLSSGNWRKYLE 772


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 172/393 (43%), Gaps = 19/393 (4%)

Query: 35  LIRQGRISECIDLLEDMERK------GLLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLV 87
           L++ G+  + ID+   M+ K       ++    + H   ++VC   +  + AF       
Sbjct: 312 LVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIH--LYSVCGQIENCQTAFNTMLAEG 369

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-- 145
             P + ++N L+   AS    + AF V   +++ G   D   YT+L+    KSGK +   
Sbjct: 370 LKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAM 429

Query: 146 -MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            +FE     + KP+ V +NALI A G  G +  A ++L EM  E + V P+ ++I  L+ 
Sbjct: 430 KVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEM--ERNGVQPNIVSICTLLA 487

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           AC   GQ  + + V        IK     Y  AI      G+++ A S+Y  M  K V P
Sbjct: 488 ACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEYDKALSLYRAMRTKKVKP 547

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  + LI       K   A   L E  +  I +    YSS++ A S      +A  ++
Sbjct: 548 DPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSVICAYSKQGQVTEAESMF 607

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             MK +  +P V T  A+I A    +   K   +  +M++  + P++I  S L+ A  + 
Sbjct: 608 TKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQPDSIACSSLMRAFNKG 667

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
                 L+L    +E  +  N   F  ++  CS
Sbjct: 668 GQPAKVLVLAEFMREKKIPFNNSSFFEMVSACS 700



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 183/411 (44%), Gaps = 23/411 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G   E +++ + M   G+   D V H    +  K      +   +F+L
Sbjct: 234 TYNNLINACGSSGNWKEALNVCKKMTENGV-GPDLVTHNIVLSAYKRGNQYSKVLSYFEL 292

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE--AGLKADCKLYTTLITTCAKS 140
           +      P  +T N+++        +  A  +   ++E  +    D   +TT+I   +  
Sbjct: 293 MKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVC 352

Query: 141 GKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+++         + E +KP+ V +NALI A    G    AF V  E+    +   PD +
Sbjct: 353 GQIENCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKK--NGFHPDVV 410

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +  +L+ A   +G+ ++A +V++++ + + K     Y   I+     G    A  +  +M
Sbjct: 411 SYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALIDAYGSKGLLTEAVEILHEM 470

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            + GV P+ V +  L+   G  G+      +L  A+ +GI +   +Y+S +G+  +   +
Sbjct: 471 ERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEY 530

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            KAL LY  M++ K+KP   T N LI+  C   +  + +  L +M  L +  +   YS +
Sbjct: 531 DKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKEVYSSV 590

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM--CSRRYEKARTL 421
           + A  ++  V     + ++ K  G  P+++ +  +I     +  +EKA  L
Sbjct: 591 ICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASAL 641



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 162/392 (41%), Gaps = 51/392 (13%)

Query: 79  EAFRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           + FR+ K   N       +NM++ + A     + A  +   +Q+   K D + Y  LI  
Sbjct: 147 QVFRWMKNQKNYCARNDIYNMMIRLHARHNIVDQARGLFFEMQKWRCKPDAETYNALINA 206

Query: 137 CAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             ++G+         D +   + P R  +N LI ACG SG    A +V  +M    + V 
Sbjct: 207 HGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGSSGNWKEALNVCKKMTE--NGVG 264

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD +T   ++ A     Q  +    ++++   NI+       I I C  + G    A  +
Sbjct: 265 PDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTTLNIVIYCLVKLGQNGKAIDI 324

Query: 249 YDDMTKK-------------------------------------GVIPDEVFLSALIDFA 271
           ++ M +K                                     G+ P+ V  +ALI   
Sbjct: 325 FNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGLKPNIVSYNALIGAY 384

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G  + AF +  E K  G    ++SY+SL+ A   +   +KA++++E M+    KP +
Sbjct: 385 ASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKPEKAMKVFELMRRNHCKPNL 444

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            + NALI A      L + +E+L +M+  G+ PN ++   LL AC R         +LS 
Sbjct: 445 VSYNALIDAYGSKGLLTEAVEILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSA 504

Query: 392 AKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 421
           A+  G+  N   +   IG  +    Y+KA +L
Sbjct: 505 AELRGIKLNTTAYNSAIGSYLSVGEYDKALSL 536



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 118/258 (45%), Gaps = 3/258 (1%)

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           R  F  LI    Q G+++ +  V   M  + +    + I    +++  A    VD+AR +
Sbjct: 126 RKNFPLLIREITQIGSLEHSVQVFRWMKNQKNYCARNDI-YNMMIRLHARHNIVDQARGL 184

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           +  + K+  K   E Y   IN   + G W +A ++ DDM +  + P     + LI+  G 
Sbjct: 185 FFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLINACGS 244

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           +G  + A  + ++    G+   +++++ ++ A      + K L  +E MK   ++P  +T
Sbjct: 245 SGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIRPDTTT 304

Query: 334 MNALITALCDGDQLPKTMEVLSDMKS-LGLC-PNTITYSILLVACERKDDVEVGLMLLSQ 391
           +N +I  L    Q  K +++ + MK     C P+ +T++ ++        +E      + 
Sbjct: 305 LNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNT 364

Query: 392 AKEDGVIPNLVMFKCIIG 409
              +G+ PN+V +  +IG
Sbjct: 365 MLAEGLKPNIVSYNALIG 382



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/418 (22%), Positives = 166/418 (39%), Gaps = 54/418 (12%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            L SYN LI     +G ++E +++L +MER G+                           
Sbjct: 443 NLVSYNALIDAYGSKGLLTEAVEILHEMERNGV--------------------------- 475

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 P + +   L++ C           VL   +  G+K +   Y + I +    G+ 
Sbjct: 476 -----QPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSYLSVGEY 530

Query: 144 DAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D           + VKPD V +N LI+ C +      A   L EM     P+  +     
Sbjct: 531 DKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSKYGEALGFLDEMMDLKIPLSKE--VYS 588

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +++ A +  GQV  A  ++  +     +     YT  I+      +WE A +++ +M   
Sbjct: 589 SVICAYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETD 648

Query: 256 GVIPDEVFLSALI---DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            V PD +  S+L+   +  G   KV    E ++E K   I     S+  ++ ACS  + W
Sbjct: 649 DVQPDSIACSSLMRAFNKGGQPAKVLVLAEFMREKK---IPFNNSSFFEMVSACSLLREW 705

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           ++ + L + M+      ++  +N L+  L    ++   M++   + + G   N  TYSIL
Sbjct: 706 REIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGKIETMMKLFYKIVASGAEINFYTYSIL 765

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY--EKARTLNEHVLSF 428
           L       +    + +L   +E G+ P++ M++ I      R   E A  + E + S 
Sbjct: 766 LKNLLAAGNWRKYIEVLQWMEEAGLQPSVGMYRSISSFAQNRSGAEYAAVIQERIESL 823



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 5/135 (3%)

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A  L+  M+  + KP   T NALI A     Q    M ++ DM    + P+  TY+ L+
Sbjct: 180 QARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSRSTYNNLI 239

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG-R 432
            AC    + +  L +  +  E+GV P+LV    ++    R  + ++ L+   L   +  R
Sbjct: 240 NACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTNIR 299

Query: 433 PQIENKWTSLALMVY 447
           P      T+L +++Y
Sbjct: 300 PDT----TTLNIVIY 310


>gi|15226583|ref|NP_179165.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216226|sp|Q9ZQF1.1|PP152_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g15630, mitochondrial; Flags: Precursor
 gi|4335729|gb|AAD17407.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251331|gb|AEC06425.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 170/396 (42%), Gaps = 12/396 (3%)

Query: 30  HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP- 88
           H    L R  RI        DM R  +      ++     +CK  K +K+A  F  ++  
Sbjct: 195 HILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGK-LKKAKGFLGIMEV 253

Query: 89  ---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               PT+ T+N L+   +     EGA  ++  ++  G + D + Y  +++     G+   
Sbjct: 254 FGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASE 313

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +   +K     PD V +N LI  C  +G ++ AF    EM  +   + P   T   L+  
Sbjct: 314 VLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQ--GMVPTFYTYNTLIHG 371

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                +++ A  + + I +  I      Y I IN   Q GD + A +++D+M   G+ P 
Sbjct: 372 LFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPT 431

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           +   ++LI       K   A E+ ++   +G+   ++  ++LM       N  +A  L +
Sbjct: 432 QFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLK 491

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M  + + P   T N L+  LC   +  +  E++ +MK  G+ P+ I+Y+ L+    +K 
Sbjct: 492 EMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKG 551

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
           D +   M+  +    G  P L+ +  ++   S+  E
Sbjct: 552 DTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQE 587



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 164/365 (44%), Gaps = 20/365 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN L++    +GRI     ++ +M+ KG     + Y+     +C   +A  E  R  K 
Sbjct: 262 TYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRA-SEVLREMKE 320

Query: 86  --LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             LVP+    ++N+L+  C+++ D E AF     + + G+      Y TLI       K+
Sbjct: 321 IGLVPDSV--SYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKI 378

Query: 144 DA---MFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +A   +   ++      D V +N LI    Q G   +AF +  EM  +   + P   T  
Sbjct: 379 EAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTD--GIQPTQFTYT 436

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+       +   A E+++ +    +K    +    ++     G+ + A S+  +M   
Sbjct: 437 SLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMM 496

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + PD+V  + L+      GK E A E++ E K +GI    ISY++L+   S   + + A
Sbjct: 497 SINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHA 556

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             + + M S+   PT+ T NAL+  L    +     E+L +MKS G+ PN  ++  ++ A
Sbjct: 557 FMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEA 616

Query: 376 CERKD 380
               D
Sbjct: 617 MSNLD 621



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 157/376 (41%), Gaps = 36/376 (9%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           ++F+ L+  C Q   VD A +    M  +     P   T   ++   +   +++ A   Y
Sbjct: 156 ILFDLLVRCCCQLRMVDEAIECFYLMKEK--GFYPKTETCNHILTLLSRLNRIENAWVFY 213

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             +++  IK     + I IN   + G  + A      M   G+ P  V  + L+      
Sbjct: 214 ADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLR 273

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G++E A  I+ E K++G    + +Y+ ++    N     +A E+   MK I L P   + 
Sbjct: 274 GRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPDSVSY 330

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N LI    +   L        +M   G+ P   TY+ L+     ++ +E   +L+ + +E
Sbjct: 331 NILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIRE 390

Query: 395 DGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 452
            G++ + V +  +I G C     +KA  L++ +++   G    +  +TSL  ++ R+   
Sbjct: 391 KGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMT--DGIQPTQFTYTSLIYVLCRK--- 445

Query: 453 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDG---FGEYDP 509
             T    E+  KV+G                  G+  D +    + +L+DG    G  D 
Sbjct: 446 NKTREADELFEKVVG-----------------KGMKPDLVM---MNTLMDGHCAIGNMD- 484

Query: 510 RAFSLLEEAASFGIVP 525
           RAFSLL+E     I P
Sbjct: 485 RAFSLLKEMDMMSINP 500


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 183/404 (45%), Gaps = 54/404 (13%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK---SQKAIKEA 80
           V + LH +++L+ QG                   +D+V +    N VCK   ++ AI+  
Sbjct: 149 VKKALHFHDKLLAQG-----------------FRLDQVSYGTLINGVCKIGETRAAIQLL 191

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            R    +  P +  +N ++      K    A  +   +   G+ A+   Y+ +I      
Sbjct: 192 RRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIV 251

Query: 141 GKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           GK+        + + + + PD  ++N L+ A  + G V  A +VLA +      + P+ I
Sbjct: 252 GKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTC--LKPNVI 309

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKG----TPEV--YTIAINCCSQTGDWEFAC 246
           T   L+   A               H +N  G    TP+V  Y I IN   +    E A 
Sbjct: 310 TYNTLIDGYAK--------------HVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEAL 355

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GA 305
           ++Y +M +K ++P+ V  ++LID    +G++  A++++ E  ++G    +I+Y+SL+ G 
Sbjct: 356 NLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGL 415

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDGDQLPKTMEVLSDMKSLGLCP 364
           C N +   KA+ L   MK   ++P + T+N L+   LC G +L     +  D+   G  P
Sbjct: 416 CKNGQ-LDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHP 474

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           N  TY+I++    ++  ++    L S+ ++ G  PN + FK II
Sbjct: 475 NVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIII 518



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/375 (20%), Positives = 149/375 (39%), Gaps = 40/375 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P   T N+L++          AF VL  + + G + D    TTLI      G+V      
Sbjct: 96  PDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHF 155

Query: 146 ----MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               + +  + D+V +  LI    + G    A  +L  ++  +   +P+ +    ++   
Sbjct: 156 HDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRL--TEPNVVMYNTIIDCL 213

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                V  A  ++  +    I      Y+  I+     G    A    ++M  K + PD 
Sbjct: 214 CKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDV 273

Query: 262 VFLSALIDFAGHAGKVEAAFEILQ--------------------EAKN-------QGISV 294
              + L+D     GKV+ A  +L                      AK+        G++ 
Sbjct: 274 YIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLMGVTP 333

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
            + SY+ ++      K  ++AL LY+ M    + P   T N+LI  LC   ++    +++
Sbjct: 334 DVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLI 393

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MC- 411
            +M   G   N ITY+ L+    +   ++  + L+++ K+ G+ P++     ++   +C 
Sbjct: 394 DEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCK 453

Query: 412 SRRYEKARTLNEHVL 426
            +R + A+ L + +L
Sbjct: 454 GKRLKNAQGLFQDLL 468



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 74/354 (20%), Positives = 152/354 (42%), Gaps = 16/354 (4%)

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
           E+  + PD  T+  L+    + GQ++ A  V   I K+  +      T  I      G  
Sbjct: 90  ELKAIQPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQV 149

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           + A   +D +  +G   D+V    LI+     G+  AA ++L+    +     ++ Y+++
Sbjct: 150 KKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTI 209

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +      K   +A  L+  M    +   V T +A+I   C   +L + +  L++M    +
Sbjct: 210 IDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAI 269

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL- 421
            P+   Y+ L+ A  ++  V+    +L+   +  + PN++ +  +I   ++    A  L 
Sbjct: 270 NPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLM 329

Query: 422 --NEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYN 474
                V S+N    ++ + K    AL +Y+E      +P     + ++  L    ++ Y 
Sbjct: 330 GVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYA 389

Query: 475 ADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP 525
            D+ + +  + G  A+ +  +   SLI+G    G+ D +A +L+ +    GI P
Sbjct: 390 WDLIDEM-HDRGHHANVITYN---SLINGLCKNGQLD-KAIALINKMKDQGIQP 438


>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 743

 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 175/397 (44%), Gaps = 52/397 (13%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +++    +GR+S+  DLL DM+R GL+     Y+   +  CK   ++KEAF     
Sbjct: 242 TYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCK-LGSLKEAF----- 295

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
                                     Q++ L+++  +  D   Y  LI     +G +   
Sbjct: 296 --------------------------QIVELMKQTNILPDLCTYNILINGVCNAGSIREG 329

Query: 147 FE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            E         ++PD V +N LI  C + G    A  ++ +M  E   V P+ +T    +
Sbjct: 330 LELMDVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLMEQM--ENDGVKPNQVTHNISL 387

Query: 199 K-ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           K  C    + +  R+V +++  +        Y   I    + GD   A  +  +M +KG+
Sbjct: 388 KWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGI 447

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             + + L+ ++D      KV+ A  +L  A  +G  V  ++Y +L+      +  +KA E
Sbjct: 448 KMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFE 507

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           +++ MK IK+ PTV+T N+LI  LC   +    ME   ++   GL P+  T++ +++   
Sbjct: 508 MWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYC 567

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMC 411
           ++  VE      +++ +    P+   + C I   G+C
Sbjct: 568 KEGRVEKAFEFYNESIKHSFKPD--NYTCNILLNGLC 602



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 157/364 (43%), Gaps = 21/364 (5%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +YN LI      G I E ++L+ D+ +   L  D V +    + C       EA +  
Sbjct: 310 LCTYNILINGVCNAGSIREGLELM-DVMKSLKLQPDVVTYNTLIDGCFELGLSLEAKKLM 368

Query: 85  KLVPN----PTLSTFNM-LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           + + N    P   T N+ L  +C   K  E   +V  LV+  G   D   Y TLI    K
Sbjct: 369 EQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKELVEMHGFSPDIVTYHTLIKAYLK 428

Query: 140 SGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            G +    E         +K + +  N ++ A  +   VD A ++L   +   + VD   
Sbjct: 429 VGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKVDEAHNLLDSAHKRGYIVD--E 486

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T G L+       +V++A E++  + +  I  T   +   I      G  E A   +D+
Sbjct: 487 VTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVTTFNSLIGGLCHHGKTELAMEKFDE 546

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           + + G++PD+   +++I      G+VE AFE   E+          + + L+        
Sbjct: 547 LAESGLLPDDCTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGM 606

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            +KAL  +  + + +   TV T N +I+A C   +L +  ++LS+M+   L P+  TY+ 
Sbjct: 607 TEKALNFFNTLITEREVDTV-TYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNS 665

Query: 372 LLVA 375
           ++ +
Sbjct: 666 IITS 669



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 90/415 (21%), Positives = 162/415 (39%), Gaps = 75/415 (18%)

Query: 181 NAEVHP-----VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT---IA 232
           N+ +HP       P        + A  +AG+   A +V++ + +  +K  P + T   + 
Sbjct: 116 NSLLHPNLHLSPPPSKALFDIALSAYLHAGKPHVALQVFQKMIRLKLK--PNLLTCNTLL 173

Query: 233 INCCSQTGDWEFACS--VYDDMTKKGVI-------------------------------- 258
           I        +  A +  V+DDM K GV                                 
Sbjct: 174 IGLVRYPSSFSIASAREVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLEDALGMLERMVSE 233

Query: 259 ----PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
               PD V  + ++      G++    ++L + K  G+    ++Y++L+       + ++
Sbjct: 234 FNVNPDNVTYNTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKE 293

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ++ E MK   + P + T N LI  +C+   + + +E++  MKSL L P+ +TY+ L+ 
Sbjct: 294 AFQIVELMKQTNILPDLCTYNILINGVCNAGSIREGLELMDVMKSLKLQPDVVTYNTLID 353

Query: 375 ACERKDDVEVGL-----MLLSQAKEDGVIPNLVMFKCIIG-MC--SRRYEKARTLNEHVL 426
            C      E+GL      L+ Q + DGV PN V     +  +C   +R E  R + E ++
Sbjct: 354 GC-----FELGLSLEAKKLMEQMENDGVKPNQVTHNISLKWLCKEEKREEVTRKVKE-LV 407

Query: 427 SFNSGRPQIENKWT-----------SLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA 475
             +   P I    T           S AL + RE    G       ++ +L  L      
Sbjct: 408 EMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKV 467

Query: 476 DIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIVPCVS 528
           D    L+++       +      +LI G+   E   +AF + +E     I P V+
Sbjct: 468 DEAHNLLDSAHKRGYIVDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITPTVT 522



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/257 (19%), Positives = 107/257 (41%), Gaps = 37/257 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L ++ ++ E  +LL+   ++G + +D+V +         ++ +++AF  +    ++   P
Sbjct: 461 LCKERKVDEAHNLLDSAHKRGYI-VDEVTYGTLIMGYFREEKVEKAFEMWDEMKRIKITP 519

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
           T++TFN L+        +E A +    + E+GL                           
Sbjct: 520 TVTTFNSLIGGLCHHGKTELAMEKFDELAESGLL-------------------------- 553

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
            PD   FN++I    + G V++AF+   E  +  H   PD+ T   L+      G  ++A
Sbjct: 554 -PDDCTFNSIILGYCKEGRVEKAFEFYNE--SIKHSFKPDNYTCNILLNGLCKEGMTEKA 610

Query: 211 REVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
              +  +I +  +      Y   I+   +    + A  +  +M +K + PD    +++I 
Sbjct: 611 LNFFNTLITEREVDTV--TYNTMISAFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIIT 668

Query: 270 FAGHAGKVEAAFEILQE 286
                GK+  A E+L++
Sbjct: 669 SLMEDGKLSEADELLKK 685



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 80/176 (45%), Gaps = 20/176 (11%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  + ++N LI      G+    ++  +++   GLL  D  +++     CK  + +++A
Sbjct: 517 ITPTVTTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDCTFNSIILGYCKEGR-VEKA 575

Query: 81  FRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLIT 135
           F F+    K    P   T N+L++       +E A      L+ E   + D   Y T+I+
Sbjct: 576 FEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLITER--EVDTVTYNTMIS 633

Query: 136 TCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
              K  K+   ++         ++PDR  +N++IT+  + G +  A ++L + + +
Sbjct: 634 AFCKDKKLKEAYDLLSEMEEKRLEPDRFTYNSIITSLMEDGKLSEADELLKKFSGK 689


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 173/389 (44%), Gaps = 41/389 (10%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAFRF 83
           +++YN +I      G+  E   LLE  +RKG +     Y+      C  +K  ++EA R 
Sbjct: 343 VYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCIL--TCLGRKGKVEEALRI 400

Query: 84  ---FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
               +    P L+T+N+L+ +   + + E A +V   ++EAGL                 
Sbjct: 401 HDEMRQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLF---------------- 444

Query: 141 GKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      P+ +  N +I    ++  +D A  +   ++ +V    PD  T  +L+  
Sbjct: 445 -----------PNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKV--CSPDSRTFCSLIDG 491

Query: 201 CANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               G+VD A  +Y KM+    I     VYT  I    + G  E    +Y +M  +G  P
Sbjct: 492 LGRRGRVDDAYSLYEKMLDSDQIPNVV-VYTSLIQNFFKCGRKEDGHKIYKEMVHRGCSP 550

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D + L++ +D    AG+VE    + +E K QG+   + SYS L+     A   ++  +L+
Sbjct: 551 DLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLF 610

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             MK   L   V   N +I   C   ++ K  ++L +MK+ GL P  +TY  ++    + 
Sbjct: 611 YEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKI 670

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           D ++   ML  +AK  GV  N+V++  +I
Sbjct: 671 DRLDEAYMLFEEAKSIGVDLNVVIYSSLI 699



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 103/462 (22%), Positives = 181/462 (39%), Gaps = 42/462 (9%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLIT 135
           ++EA   F  +  P      +++ V    KD   AFQ  R V+    +A C ++Y   + 
Sbjct: 87  VEEALNVFDEMSQP-----EVIVGVMKRLKDVNVAFQYFRWVERKTQQAHCPEVYNAFLM 141

Query: 136 TCAKSGKVDAMFENVKPDRV--------VFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
             A++  +D + + ++   V        V   L+ +  +S  +  AF V+  M       
Sbjct: 142 VMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMRK--FKF 199

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P       L+ A + A + D    ++  + +   +    ++T  +   ++ G  + A S
Sbjct: 200 RPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALS 259

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           + D+M       D V  +  ID  G  GKV+ A++   E K QG+    ++Y++L+G   
Sbjct: 260 LLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLC 319

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            A+   +A+EL+E +   +  P V   N +I       +  +   +L   K  G  P+ I
Sbjct: 320 KARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVI 379

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 427
            Y+ +L    RK  VE  L +  + ++D   PNL  +  +I M  +  E           
Sbjct: 380 AYNCILTCLGRKGKVEEALRIHDEMRQDAA-PNLTTYNILIDMLCKAGE----------- 427

Query: 428 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 487
                          AL V      AG  P +  V+ ++  L      D    +   L  
Sbjct: 428 ------------LEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDH 475

Query: 488 SADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCV 527
              +      CSLIDG G       A+SL E+      +P V
Sbjct: 476 KVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNV 517



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 164/390 (42%), Gaps = 58/390 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDK-----VYHA---RFFNVCKSQKAIKEAFRFFKL 86
           L R+GR+ +   L E M     LD D+     VY +    FF   + +   K        
Sbjct: 492 LGRRGRVDDAYSLYEKM-----LDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHR 546

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KV 143
             +P L   N  M     + + E    +   ++  GL  D + Y+ LI    K+G   + 
Sbjct: 547 GCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRET 606

Query: 144 DAMFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
             +F  +K      D + +N +I    +SG VD+A+ +L EM  +   + P  +T G+++
Sbjct: 607 YKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTK--GLQPTVVTYGSVV 664

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              A   ++DR  E Y +                                +++    GV 
Sbjct: 665 DGLA---KIDRLDEAYML--------------------------------FEEAKSIGVD 689

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
            + V  S+LID  G  G+++ A+ IL+E   +G++    +++ L+ A   A+   +A   
Sbjct: 690 LNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVC 749

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           +++MK++K  P   T + +I  LC   +  K      +M+  GL PN ITY+ ++    +
Sbjct: 750 FQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAK 809

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             +V     L  + K  G +P+   +  +I
Sbjct: 810 AGNVMEARGLFDRFKASGGVPDSACYNAMI 839



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 17/164 (10%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           Y+ LI    + GRI E   +LE++ +KGL      ++     + K+++ I EA   F+ +
Sbjct: 695 YSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEE-IDEAQVCFQNM 753

Query: 88  PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            N    P   T++++++     +    AF   + +Q+ GLK +   YTT+I   AK+G V
Sbjct: 754 KNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNV 813

Query: 144 ---DAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAE 179
                +F+  K     PD   +NA+I     +     A+ V  E
Sbjct: 814 MEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEE 857


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 177/387 (45%), Gaps = 16/387 (4%)

Query: 40  RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RISE + L++ M   G     +  + + H  F +  K+ +A+    R       P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH-NKASEAVALIDRMVAKGCQPDLVTY 224

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-------- 147
            ++++      D++ AF +L  +++  L+    +YTT+I    K+  +D           
Sbjct: 225 GVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMET 284

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + ++P+ V +++LI+     G    A  +L++M      ++PD  T  AL+ A    G++
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE--RKINPDVFTFSALIDAFVKEGKL 342

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             A ++Y  + K +I  +   Y+  IN        + A  +++ M  K   PD V  S L
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTL 402

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I     A +V+   E+ +E   +G+    ++Y++L+     A +   A E+++ M S  +
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P + T N L+  LC   +L K M V   ++   + P   TY+I++    +   VE G  
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCSR 413
           L       GV P++V +  +I G C +
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRK 549



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 173/402 (43%), Gaps = 15/402 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPTLS 93
           +  +    I L E M+  G+      Y       C+  +   A+    +  KL   P + 
Sbjct: 93  KMNKFDVVISLGEQMQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIV 152

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAM 146
           T + L++    SK    A  ++  +   G + +   + TLI       K       +D M
Sbjct: 153 TLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRM 212

Query: 147 F-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             +  +PD V +  ++    + G  D AF +L +M  E   ++P  +    ++       
Sbjct: 213 VAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKM--EQGKLEPGVLIYTTIIDGLCKNK 270

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +D A  ++K +    I+     Y+  I+C    G W  A  +  DM ++ + PD    S
Sbjct: 271 HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 330

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           ALID     GK+  A ++  E   + I   I++YSSL+          +A +++E M S 
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 390

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
              P V + + LI   C   ++ + ME+  +M   GL  NT+TY+ L+    +  D ++ 
Sbjct: 391 HCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMA 450

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
             +  +   DGV PN++ +  ++ G+C   + EKA  + E++
Sbjct: 451 QEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 162/376 (43%), Gaps = 15/376 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G       LL  ME+  L     +Y      +CK+ K + +A   FK +     
Sbjct: 229 NGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKN-KHMDDALNLFKEMETKGI 287

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P + T++ L+S   +      A ++L  + E  +  D   ++ LI    K GK+     
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEK 347

Query: 144 --DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             D M + ++ P  V +++LI        +D A  +   M ++ H   PD ++   L+K 
Sbjct: 348 LYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK-HCF-PDVVSYSTLIKG 405

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              A +VD   E+++ + +  + G    YT  I    Q GD + A  ++ +M   GV P+
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPN 465

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  + L+D     GK+E A  + +  +   +   I +Y+ ++     A   +   +L+ 
Sbjct: 466 IMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFC 525

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           ++    +KP V   N +I+  C      +   +  +MK  G  PN+  Y+ L+ A  R  
Sbjct: 526 NLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDG 585

Query: 381 DVEVGLMLLSQAKEDG 396
           D E    L+ + +  G
Sbjct: 586 DREASAELIKEMRSCG 601



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 144/334 (43%), Gaps = 17/334 (5%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPN 89
           L   GR S+   LL DM ERK  ++ D    +   +    +  + EA + +    K   +
Sbjct: 301 LCNYGRWSDASRLLSDMIERK--INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 358

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P++ T++ L++        + A Q+   +       D   Y+TLI    K+ +VD   E 
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMEL 418

Query: 150 VKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            +         + V +  LI    Q+G  D A ++  EM ++  P  P+ +T   L+   
Sbjct: 419 FREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVP--PNIMTYNTLLDGL 476

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G++++A  V++ + +  ++ T   Y I I    + G  E    ++ +++ KGV PD 
Sbjct: 477 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDV 536

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + +I      G  E A  + +E K  G       Y++L+ A     + + + EL + 
Sbjct: 537 VAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKE 596

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           M+S       ST+  +   L DG      +++LS
Sbjct: 597 MRSCGFAGDASTIGLVTNMLHDGRLDKSFLDMLS 630



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/350 (20%), Positives = 151/350 (43%), Gaps = 15/350 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L +   + + ++L ++ME KG+      Y +    +C   +    +     ++    NP 
Sbjct: 266 LCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 325

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFE 148
           + TF+ L+           A ++   + +  +      Y++LI       ++D    MFE
Sbjct: 326 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 385

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                +  PD V ++ LI    ++  VD   ++  EM+     +  + +T   L++    
Sbjct: 386 FMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQ--RGLVGNTVTYTTLIQGLFQ 443

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           AG  D A+E++K +    +      Y   ++   + G  E A  V++ + +  + P    
Sbjct: 444 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 503

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + +I+    AGKVE  +++      +G+   +++Y++++       + ++A  L++ MK
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563

Query: 324 SIKLKPTVSTMNALITA-LCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
                P     N LI A L DGD+   + E++ +M+S G   +  T  ++
Sbjct: 564 EDGTLPNSGCYNTLIRARLRDGDR-EASAELIKEMRSCGFAGDASTIGLV 612



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 115/272 (42%), Gaps = 13/272 (4%)

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D A  +  EM  +  P  P  I    L+ A A   + D    + + +    +      Y
Sbjct: 62  LDDAVALFGEM-VKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTY 119

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           +I INC  +      A +V   M K G  P+ V LS+L++   H+ ++  A  ++ +   
Sbjct: 120 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV 179

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            G     +++++L+          +A+ L + M +   +P + T   ++  LC       
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 239

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
              +L+ M+   L P  + Y+ ++    +   ++  L L  + +  G+ PN+V +  +I 
Sbjct: 240 AFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299

Query: 410 -MCSR-RYEKA---------RTLNEHVLSFNS 430
            +C+  R+  A         R +N  V +F++
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSA 331



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 102/238 (42%), Gaps = 14/238 (5%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A +++ +M K    P  +  S L+       K +    + ++ +N G+     +YS L+ 
Sbjct: 65  AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGMPHNHYTYSILIN 124

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                     AL +   M  +  +P + T+++L+   C   ++ + + ++  M   G  P
Sbjct: 125 CFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQP 184

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 413
           NT+T++ L+      +     + L+ +    G  P+LV +  ++ G+C R          
Sbjct: 185 NTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILL 244

Query: 414 -RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
            + E+ + L   VL + +    + +NK    AL +++E    G  P V   S ++ CL
Sbjct: 245 NKMEQGK-LEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 188/435 (43%), Gaps = 21/435 (4%)

Query: 15  NGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
           +G+ ++ + DV       N    +G++ +   L  +M   G+      Y+     +CK+Q
Sbjct: 183 DGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQ 239

Query: 75  KAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           +  +    F ++V     P   T+N ++     +++ + A  V + + + G+K     Y 
Sbjct: 240 EVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYN 299

Query: 132 TLITTCAKSGKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           T+I    K+  VD    +F+      VKPD V +N +I    ++ A+D+A  V  +M  +
Sbjct: 300 TIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDK 359

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
              V PD++T   ++     A  VDRA  V++ +    +K     Y   I+    TG WE
Sbjct: 360 --GVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWE 417

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
                  +M+   + PD      L+D+    GK   A  +      +GI   +  Y  ++
Sbjct: 418 EVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIML 477

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                     +  +L   M +  + P     N +I A      + + M +   MK  GL 
Sbjct: 478 HGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLS 537

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 421
           PN +TY  L+ A  +   V+  ++  +Q   +GV PN V+F  ++ G+C+  ++EK   L
Sbjct: 538 PNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEEL 597

Query: 422 NEHVLSFNSG-RPQI 435
              +L  N G RP I
Sbjct: 598 FLEML--NQGIRPDI 610



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/408 (22%), Positives = 178/408 (43%), Gaps = 19/408 (4%)

Query: 31  SYNRLIRQGRISECID----LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I     ++ ID    + + M  KG+   +  Y      +CK+Q   +    F ++
Sbjct: 332 TYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQM 391

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +     P   T+N L+    S+   E   Q ++ +    L+ D   Y  L+    K+GK 
Sbjct: 392 IDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKC 451

Query: 144 D---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +   ++F++     +KP   ++  ++   G+ GA+    D+L  M A  + + P+H    
Sbjct: 452 NEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVA--NGISPNHRIFN 509

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++ A A    +D    ++  + +  +      Y   I+   + G  + A   ++ M  +
Sbjct: 510 TVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINE 569

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           GV P+ V  ++L+       K E   E+  E  NQGI   I+ +++++          +A
Sbjct: 570 GVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEA 629

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             L + M  + LKP V + N LI   C   ++ + +++L  M S GL PN ++Y+ LL  
Sbjct: 630 RRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHG 689

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 421
             +   ++    L  +    GV P +  +  I+    R  R+ +AR L
Sbjct: 690 YCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAREL 737



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 132/308 (42%), Gaps = 22/308 (7%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           +K  +R   +V N       +L  +C + +  E    +LR + E G +     Y TL+  
Sbjct: 111 LKTGWRVDDIVVN------QLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKG 164

Query: 137 CAKSGK-----------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
                +           VD    +  PD V +N +I      G VD+A+ +  EM     
Sbjct: 165 LCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEMG---- 220

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            V PD +T   ++     A +VDRA +V++ + +  +K     Y   I+   +  + + A
Sbjct: 221 -VSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMA 279

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             V+  M  KGV P  V  + +ID    A  V+ A  + Q+  ++G+    ++Y++++  
Sbjct: 280 EGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDG 339

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
              A+   KA  +++ M    +KP   T   +I  LC    + +   V   M   G+ PN
Sbjct: 340 LCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPN 399

Query: 366 TITYSILL 373
             TY+ L+
Sbjct: 400 NGTYNCLI 407



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/402 (20%), Positives = 175/402 (43%), Gaps = 19/402 (4%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AHD+   + +Y  L+    + G+ +E   L + M RKG+     +Y        K + A+
Sbjct: 428 AHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGK-KGAL 486

Query: 78  KEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            E      L+     +P    FN ++   A     +    +   +++ GL  +   Y TL
Sbjct: 487 SEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTL 546

Query: 134 ITTCAKSGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I    K G+VD         + E V P+ VVFN+L+         ++  ++  EM  +  
Sbjct: 547 IDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQ-- 604

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + PD +    ++      G+V  AR +   +    +K     Y   I+        + A
Sbjct: 605 GIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEA 664

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             + D M   G+ P+ V  + L+     AG+++ A+ + +E   +G++ G+ +Y++++  
Sbjct: 665 VKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNG 724

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
              +  + +A ELY +M   +   ++ T + ++   C  +   +  ++   + S+ L  +
Sbjct: 725 LFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLD 784

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            IT++I++    +    E  + L +    +G++P++V ++ I
Sbjct: 785 IITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLI 826



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 83/425 (19%), Positives = 175/425 (41%), Gaps = 19/425 (4%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A+ +S     +N +I    ++  I E + +   M+++GL      Y      +CK  +  
Sbjct: 498 ANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVD 557

Query: 78  KEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
               +F +++     P    FN L+    +    E   ++   +   G++ D   + T++
Sbjct: 558 DAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVL 617

Query: 135 TTCAKSGKV-------DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               K G+V       D+M    +KPD + +N LI     +  +D A  +L  M +    
Sbjct: 618 CNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSA--G 675

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + P+ ++   L+     AG++D A  +++ + +  +    E Y   +N   ++G +  A 
Sbjct: 676 LKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAR 735

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +Y +M K   +      S ++D        + AF+I Q   +  + + II+++ ++   
Sbjct: 736 ELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGL 795

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
                 + A++L+  + +  L P+V T   +   L +   L +   + S M+  G  PN+
Sbjct: 796 FKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNS 855

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEH 424
              + L+     + ++      LS+  E            +I + SR    + A++L E 
Sbjct: 856 HMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLFSREEYQQHAKSLPEK 915

Query: 425 VLSFN 429
              FN
Sbjct: 916 CRFFN 920



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 104/218 (47%), Gaps = 11/218 (5%)

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           C+++ ++  +R   +M+   + K  P+   Y+I I C  + G  E   + +  + K G  
Sbjct: 58  CSSSSKLAVSR-FNRMLRDCSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGLILKTGWR 116

Query: 259 PDEVFLSALIDFAGHAGKV-EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            D++ ++ L+       +V EA   +L++    G  +G++SY++L+    + +  ++A E
Sbjct: 117 VDDIVVNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARE 176

Query: 318 LYEHM---KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           L   M   +     P V + N +I    +  Q+ K   +  +M   G+ P+ +TY+ ++ 
Sbjct: 177 LLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIID 233

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
              +  +V+    +  Q  E GV PN V +  II G+C
Sbjct: 234 GLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLC 271


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 172/424 (40%), Gaps = 55/424 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L+R+G + E + L+    R      D    A       +     EA R       P +  
Sbjct: 75  LVRRGELDEALRLVGSARRP-----DAGTCAALIKKLSASGRTAEARRVLAAC-GPDVMA 128

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAMF 147
           +N +++    +   + A    RLV E  ++ D   Y TLI      G+       +D M 
Sbjct: 129 YNAMVAGYCGAGQLDAAR---RLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEML 185

Query: 148 EN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
                PD V +  L+ A  +     +A  +L EM  +     PD +T   ++      G+
Sbjct: 186 RRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDK--GCTPDIVTYNVVVNGICQEGR 243

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           VD A E  K +  Y  +     Y I +        WE A  +  +M +KG  P+ V  + 
Sbjct: 244 VDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNM 303

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LI F    G VE A E+L++    G +   +SY+ L+ A    K   KA+   + M S  
Sbjct: 304 LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG 363

Query: 327 LKPTVSTMNALITALC-------------------------------DG----DQLPKTM 351
             P + + N L+TALC                               DG     +  + +
Sbjct: 364 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 423

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
           E+L++M S GL P+ ITYS +     R+D +E  +    + ++ G+ PN V++  II G+
Sbjct: 424 ELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGL 483

Query: 411 CSRR 414
           C RR
Sbjct: 484 CKRR 487



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 152/327 (46%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P + T+ +L+         + A ++L  +++ G   D   Y  ++    + G+VD   E 
Sbjct: 191 PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEF 250

Query: 150 VK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +K        P+ V +N ++     +   + A +++ EM  +  P  P+ +T   L+   
Sbjct: 251 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP--PNVVTFNMLISFL 308

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G V+ A EV + I KY        Y   ++   +    + A +  D M  +G  PD 
Sbjct: 309 CRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDI 368

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L+     +G+V+ A E+L + K++G +  +ISY++++   + A   ++ALEL   
Sbjct: 369 VSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNE 428

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S  L+P + T + +   LC  D++   +     ++ +G+ PNT+ Y+ +++   ++ +
Sbjct: 429 MVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRE 488

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
               + L +    +G +PN   +  +I
Sbjct: 489 THSAIDLFAYMIGNGCMPNESTYTILI 515



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 155/397 (39%), Gaps = 75/397 (18%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           +PD     ALI     SG    A  VLA          PD +   A++     AGQ+D A
Sbjct: 93  RPDAGTCAALIKKLSASGRTAEARRVLAACG-------PDVMAYNAMVAGYCGAGQLDAA 145

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           R   +++ +  ++     Y   I      G    A +V D+M ++  +PD          
Sbjct: 146 R---RLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPD---------- 192

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
                                    +++Y+ L+ A      +++A++L + M+     P 
Sbjct: 193 -------------------------VVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPD 227

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGLM 387
           + T N ++  +C   ++   +E L ++ S G  PNT++Y+I+   L   ER +D E    
Sbjct: 228 IVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAE---E 284

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHV---------LSFN------S 430
           L+ +  + G  PN+V F  +I    R+   E A  + E +         LS+N       
Sbjct: 285 LMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFC 344

Query: 431 GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSAD 490
            + +++     L LMV R     G  P +   + +L  L      D+   L+  L     
Sbjct: 345 KQKKMDKAMAFLDLMVSR-----GCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGC 399

Query: 491 ALKRSNLCSLIDGFGEY--DPRAFSLLEEAASFGIVP 525
           A    +  ++IDG  +      A  LL E  S G+ P
Sbjct: 400 APVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQP 436


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 190/415 (45%), Gaps = 26/415 (6%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +++N L+     +G +++ +  L  M+  GL   D V +    N    +  + EA     
Sbjct: 210 YTFNLLVHTHCSKGTLADALSTLSKMQGFGL-SPDAVTYNTLLNAHCRKGMLGEARTLLA 268

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      PT +T+N L+S  A     + A  V+  +   G + D   Y  L     ++G
Sbjct: 269 RMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAG 328

Query: 142 KVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           KVD  F+          V PD V +N L+ AC +      A ++L EM  +   V    +
Sbjct: 329 KVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREK--GVKSSLV 386

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYD 250
           T   ++K     GQ++ A    +M+ +  +  TP+V  Y   I+   + G+   A  + D
Sbjct: 387 THNIIVKGLCREGQLEEALGRLEMMTEEGL--TPDVITYNTLIDASCKAGNVAKAFVLMD 444

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M + G+  D   L+ L+       + E A E+L+    +G     +SY ++M A     
Sbjct: 445 EMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEY 504

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             + AL L++ M   KL P++ST N LI  L    +L + ++ L+++  +GL P+  TY+
Sbjct: 505 KPEPALCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYN 564

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNE 423
           I++ A  ++ D+E      ++  E+   P++V    ++ G+C   R EKA  L E
Sbjct: 565 IIIHAYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFE 619



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 200/473 (42%), Gaps = 32/473 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R G I +  D++E M   G       Y+     +C++ K + EAF+    
Sbjct: 281 TYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGK-VDEAFKLKDE 339

Query: 87  -----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
                + +P + T+N L+  C   + S  A  +L  ++E G+K+    +  ++    + G
Sbjct: 340 MEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREG 399

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +++           E + PD + +N LI A  ++G V +AF ++ EM      +  D  T
Sbjct: 400 QLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRS--GLKMDTFT 457

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
           +  L+       + + A E+ +   +         Y   +    +    E A  ++D+M 
Sbjct: 458 LNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMI 517

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           K+ + P     + LI      GK+  A + L E    G+     +Y+ ++ A     + +
Sbjct: 518 KRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLE 577

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA + +  M     KP V T N L+  LC   +L K M++       G   + ITY+ L+
Sbjct: 578 KAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLI 637

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS---RRYEKARTLNEHVLSFNS 430
            A  + +DV+  L   +  +  G+ P++  +  ++   S   R  E  + L  H L+  S
Sbjct: 638 QALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKML--HKLN-ES 694

Query: 431 GRPQIENKWTSLALMVYREAIVAGTIPTV----EVVSKVLGCLQLPYNADIRE 479
           G+      + S+   V  EA+  G  P V    E V    G  Q  YN  I+E
Sbjct: 695 GKLYGRFFYPSIKSSV--EAVETGKDPEVKSDIESVGNTQGDDQESYNKYIKE 745



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/310 (22%), Positives = 128/310 (41%), Gaps = 38/310 (12%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V+P     NA+++A  +S +      + A  +     + P+H T   L+    + G +  
Sbjct: 168 VRPSLQAANAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNLLVHTHCSKGTLAD 227

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A      +  + +      Y   +N   + G    A ++   M K+G++P     + L+ 
Sbjct: 228 ALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVS 287

Query: 270 ---------------------------------FAG--HAGKVEAAFEILQEAKNQGI-S 293
                                             AG   AGKV+ AF++  E +  GI S
Sbjct: 288 AYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVS 347

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
             +++Y++L+ AC   +    AL L E M+   +K ++ T N ++  LC   QL + +  
Sbjct: 348 PDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGR 407

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV-IPNLVMFKCIIGMC- 411
           L  M   GL P+ ITY+ L+ A  +  +V    +L+ +    G+ +    +   +  +C 
Sbjct: 408 LEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCK 467

Query: 412 SRRYEKARTL 421
            +RYE+A  L
Sbjct: 468 EKRYEEAEEL 477



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 74/165 (44%), Gaps = 1/165 (0%)

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+    + L+      G +  A   L + +  G+S   ++Y++L+ A        +A  L
Sbjct: 207 PNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTL 266

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
              MK   + PT +T N L++A      + +  +V+  M + G  P+  TY++L     +
Sbjct: 267 LARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQ 326

Query: 379 KDDVEVGLMLLSQAKEDGVI-PNLVMFKCIIGMCSRRYEKARTLN 422
              V+    L  + ++ G++ P++V +  ++  C +    +  LN
Sbjct: 327 AGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALN 371


>gi|30688764|ref|NP_850356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75158748|sp|Q8RWS8.1|PP199_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g41720; AltName: Full=Protein EMBRYO DEFECTIVE 2654
 gi|20268762|gb|AAM14084.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|21436141|gb|AAM51317.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330254931|gb|AEC10025.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 183/396 (46%), Gaps = 21/396 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G   E +++ + M   G+   D V H    +  KS +   +A  +F+L
Sbjct: 215 TYNNLINACGSSGNWREALEVCKKMTDNGV-GPDLVTHNIVLSAYKSGRQYSKALSYFEL 273

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE--AGLKADCKLYTTLITTCAKS 140
           +      P  +TFN+++   +    S  A  +   ++E  A  + D   +T+++   +  
Sbjct: 274 MKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVK 333

Query: 141 GKVD---AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+++   A+FE      +KP+ V +NAL+ A    G    A  VL ++    + + PD +
Sbjct: 334 GEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ--NGIIPDVV 391

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +   L+ +   + Q  +A+EV+ M+ K   K     Y   I+     G    A  ++  M
Sbjct: 392 SYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQM 451

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            + G+ P+ V +  L+     + K      +L  A+++GI++   +Y+S +G+  NA   
Sbjct: 452 EQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAEL 511

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +KA+ LY+ M+  K+K    T   LI+  C   + P+ +  L +M+ L +      YS +
Sbjct: 512 EKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSV 571

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L A  ++  V     + +Q K  G  P+++ +  ++
Sbjct: 572 LCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSML 607



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 147/330 (44%), Gaps = 47/330 (14%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDA 145
           P+ ST+N L++ C SS +   A +V + + + G+  D   +  ++ +  KSG    K  +
Sbjct: 211 PSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTH-NIVLSAYKSGRQYSKALS 269

Query: 146 MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            FE      V+PD   FN +I    + G   +A D+   M  +     PD +T  ++M  
Sbjct: 270 YFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIM-- 327

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                            H Y++KG  E      NC           +V++ M  +G+ P+
Sbjct: 328 -----------------HLYSVKGEIE------NC----------RAVFEAMVAEGLKPN 354

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  +AL+      G    A  +L + K  GI   ++SY+ L+ +   ++   KA E++ 
Sbjct: 355 IVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFL 414

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-K 379
            M+  + KP V T NALI A      L + +E+   M+  G+ PN ++   LL AC R K
Sbjct: 415 MMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSK 474

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
             V V   +LS A+  G+  N   +   IG
Sbjct: 475 KKVNVD-TVLSAAQSRGINLNTAAYNSAIG 503



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 164/374 (43%), Gaps = 25/374 (6%)

Query: 81  FRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           F++ K+  N       +NM++ + A     + A  +   +Q+   K D + Y  LI    
Sbjct: 130 FKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHG 189

Query: 139 KSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           ++G+         D +   + P R  +N LI ACG SG    A +V  +M    + V PD
Sbjct: 190 RAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTD--NGVGPD 247

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +T   ++ A  +  Q  +A   ++++    ++     + I I C S+ G    A  +++
Sbjct: 248 LVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFN 307

Query: 251 DMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            M +K     PD V  ++++      G++E    + +    +G+   I+SY++LMGA + 
Sbjct: 308 SMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAV 367

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                 AL +   +K   + P V +   L+ +     Q  K  EV   M+     PN +T
Sbjct: 368 HGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVT 427

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK----------- 417
           Y+ L+ A      +   + +  Q ++DG+ PN+V    ++  CSR  +K           
Sbjct: 428 YNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQ 487

Query: 418 ARTLNEHVLSFNSG 431
           +R +N +  ++NS 
Sbjct: 488 SRGINLNTAAYNSA 501



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 129/297 (43%), Gaps = 38/297 (12%)

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           R  F  LI    + G ++   +V   M  + +    + I    +++  A    VD+AR +
Sbjct: 107 RKNFPVLIRELSRRGCIELCVNVFKWMKIQKNYCARNDI-YNMMIRLHARHNWVDQARGL 165

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           +  + K++ K   E Y   IN   + G W +A ++ DDM +  + P     + LI+  G 
Sbjct: 166 FFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGS 225

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           +G    A E+ ++  + G+   +++++ ++ A  + + + KAL  +E MK  K++P  +T
Sbjct: 226 SGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTT 285

Query: 334 MNALITALCDGDQLPKTMEVLSDMK----------------------------------- 358
            N +I  L    Q  + +++ + M+                                   
Sbjct: 286 FNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEA 345

Query: 359 --SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             + GL PN ++Y+ L+ A          L +L   K++G+IP++V + C++    R
Sbjct: 346 MVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGR 402



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/397 (19%), Positives = 162/397 (40%), Gaps = 18/397 (4%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           L+SY R  + G+  E   ++    RK     + V +    +   S   + EA   F+ + 
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKP----NVVTYNALIDAYGSNGFLAEAVEIFRQME 452

Query: 89  N----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P + +   L++ C+ SK       VL   Q  G+  +   Y + I +   + +++
Sbjct: 453 QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELE 512

Query: 145 ---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
              A++++     VK D V F  LI+   +      A   L EM     P+  +     +
Sbjct: 513 KAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKE--VYSS 570

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ A +  GQV  A  ++  +     +     YT  ++  + +  W  AC ++ +M   G
Sbjct: 571 VLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANG 630

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD +  SAL+      G+    F ++   + + I      +  +  AC+  + W++A+
Sbjct: 631 IEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAI 690

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +L + M       ++   N ++       ++   M++   + + G+  N  TY+ILL   
Sbjct: 691 DLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHL 750

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
               +    + +L      G+ P+  M++ II    R
Sbjct: 751 LAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGER 787


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 111/486 (22%), Positives = 210/486 (43%), Gaps = 50/486 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFF- 84
           SYN ++    +  R+   + LLE M  +G    D V +    N +CK  + + EA R   
Sbjct: 267 SYNTVLHGFCKANRVENALWLLEQMVTRGC-PPDVVSYTTVINGLCKLDQ-VDEACRVMD 324

Query: 85  KLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           K++     P + T+  L+       D +GA +++R + E G + +   Y  ++    +  
Sbjct: 325 KMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRN 384

Query: 142 KVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            ++   + ++        PD + ++ +I+   ++G +  A D+L +M        PD   
Sbjct: 385 DMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIR--RGCRPDVAC 442

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDD 251
           +  L+ A   A  +D A+E+ +M     +   P+V  Y+I I+   +      A S  D 
Sbjct: 443 LSTLIDALCKAAAIDSAQELLRM--SIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDV 500

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M K    PD V  ++++D    + ++  AF +    +  G+   +++YS ++ +     N
Sbjct: 501 MVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNN 560

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
              A ++ E MK  K  P V T +ALI  LC    + K  +V  +M   G  PN +TY+ 
Sbjct: 561 LDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNT 620

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS 430
           L+    + + VE    +L   ++    P+ + + C+I G+C                 N+
Sbjct: 621 LIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGLC-----------------NA 663

Query: 431 GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSAD 490
            R  +E  W      V RE    G +P       +L  LQ   N ++ E+L++ +  + +
Sbjct: 664 SR--LEEAWR-----VLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEATEE 716

Query: 491 ALKRSN 496
               +N
Sbjct: 717 GQWNAN 722



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 180/395 (45%), Gaps = 28/395 (7%)

Query: 152  PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
            P+   F  LI    ++G +  A+++L EM    H V  + I    ++K   +A ++D A 
Sbjct: 875  PNMFTFTILIHGLCRAGDIGTAYELLKEMPR--HGVPQNVILHNVVIKGLCSARKLDSAL 932

Query: 212  EVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
            E++K + +      P+V+T +  ++   ++G  + AC + +DM  KG  P+ V  S+L+ 
Sbjct: 933  ELFKEMEESG-SCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLH 991

Query: 270  FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                AGK++ A  +LQ     G S  I++Y++++          +A  L E M     +P
Sbjct: 992  GLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQP 1051

Query: 330  TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
             V T   L+ A C   +    + ++  M   G  PN  TY+ LL    +KD+VE    LL
Sbjct: 1052 NVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLL 1111

Query: 390  SQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM-- 445
            S   + G +PN+V +  +I G+C + +  +   L E +LS N+  P I    T +  M  
Sbjct: 1112 SSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLS-NNCVPDIVTFNTIIDAMCK 1170

Query: 446  VYREAIV---------AGTIPTVEVVSKVLGCLQLPYNADIRERLVENL----GVSADAL 492
             YR  I          +G  P +   + ++  L      D  E L+  +    G S D +
Sbjct: 1171 TYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDII 1230

Query: 493  KRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
              +   ++IDG  +     RA+ L  +  S G+ P
Sbjct: 1231 TYN---TVIDGLCKSKRVDRAYKLFLQMLSDGLAP 1262



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 180/423 (42%), Gaps = 48/423 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDM------------------DKVYHAR---------- 66
            IR G+I    +L ++M RKGL                     D V H R          
Sbjct: 171 FIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDS 230

Query: 67  -----FFNVCKSQKAIKEAFRFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRL 117
                  N       + +A R   ++V N   P + ++N ++     +   E A  +L  
Sbjct: 231 VTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQ 290

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDA--------MFENVKPDRVVFNALITACGQSGA 169
           +   G   D   YTT+I    K  +VD         +    +P+ + +  L+    + G 
Sbjct: 291 MVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGD 350

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D A +++ +M    +   P+ IT   +M        ++RA +V +M+ +         Y
Sbjct: 351 LDGAVELVRKMTERGYR--PNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINY 408

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           +  I+   + G    A  + + M ++G  PD   LS LID    A  +++A E+L+ +  
Sbjct: 409 STIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIG 468

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
              +  +++YS L+ A   AK   +A    + M   +  P V T N+++  LC   ++  
Sbjct: 469 MDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRIND 528

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
              +   M++ G+ P+ +TYSI++ +  + ++++    +L + KE   +P++V +  +I 
Sbjct: 529 AFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALIN 588

Query: 409 GMC 411
           G+C
Sbjct: 589 GLC 591



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 163/375 (43%), Gaps = 19/375 (5%)

Query: 28   QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
             L +YN L+    ++  +     LL  M +KG +     Y+     +CK+ K  +     
Sbjct: 1087 NLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLL 1146

Query: 84   FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +++ N   P + TFN ++     +   + A+++  L+QE+G   +   Y +L+    KS
Sbjct: 1147 EQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKS 1206

Query: 141  GKVD---------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
             + D            +   PD + +N +I    +S  VDRA+ +  +M ++   + PD 
Sbjct: 1207 RRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSD--GLAPDD 1264

Query: 192  ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
            +T   ++ +      +D A  V +++ K         Y   I+   +TG+ + A  +   
Sbjct: 1265 VTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQL 1324

Query: 252  MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
            +  KG  PD V  S  ID+    G++  A E+L+     G+    ++Y++L+    +A  
Sbjct: 1325 LLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASL 1384

Query: 312  WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM-EVLSDMKSLGLCPNTITYS 370
             + A++L+E M+    +P  +T   L+  L D       + EV   M   G   N    S
Sbjct: 1385 TEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSS 1444

Query: 371  ILLVACERKDDVEVG 385
             L  + E + DV +G
Sbjct: 1445 KLEASIEVEADVRLG 1459



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/367 (21%), Positives = 172/367 (46%), Gaps = 18/367 (4%)

Query: 77   IKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYT 131
            I  A+   K +P       +   N+++    S++  + A ++ + ++E+G    D   Y+
Sbjct: 893  IGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYS 952

Query: 132  TLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
            T++ +  KSGKV        D + +   P+ V +++L+    ++G +D A  +L  M   
Sbjct: 953  TIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRS 1012

Query: 184  VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
                 P+ +T   ++      G++D A  + + +     +     YT+ ++   + G  E
Sbjct: 1013 --GCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAE 1070

Query: 244  FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
             A  + + M +KG +P+    ++L+D      +VE A ++L     +G    ++SY++++
Sbjct: 1071 DAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVI 1130

Query: 304  GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                 A    + + L E M S    P + T N +I A+C   ++    E+ + ++  G  
Sbjct: 1131 AGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCT 1190

Query: 364  PNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKART 420
            PN +TY+ L+   C+ +   +   +L    ++ G  P+++ +  +I G+C S+R ++A  
Sbjct: 1191 PNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYK 1250

Query: 421  LNEHVLS 427
            L   +LS
Sbjct: 1251 LFLQMLS 1257



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 161/401 (40%), Gaps = 57/401 (14%)

Query: 26   SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
            S  + +YN +I    + GRI E   LLE+M   G       Y       CK  KA ++A 
Sbjct: 1015 SPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKA-EDAI 1073

Query: 82   RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
               +++      P L T+N L+ +     + E A Q+L  + + G   +   Y T+I   
Sbjct: 1074 GLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGL 1133

Query: 138  AKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDV------------L 177
             K+ KV          +  N  PD V FN +I A  ++  VD A+++            L
Sbjct: 1134 CKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNL 1193

Query: 178  AEMNAEVHPV----------------------DPDHITIGALMKACANAGQVDRAREVYK 215
               N+ VH +                       PD IT   ++     + +VDRA +++ 
Sbjct: 1194 VTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLFL 1253

Query: 216  MIHKYNIKGTPEVYTIAINCCSQTGDWEF---ACSVYDDMTKKGVIPDEVFLSALIDFAG 272
             +    +      Y+I I   S    W F   A +V + M K G  P  +    LID   
Sbjct: 1254 QMLSDGLAPDDVTYSIVI---SSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFC 1310

Query: 273  HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
              G ++ A EILQ   ++G    ++++S  +   S     ++A EL E M    L P   
Sbjct: 1311 KTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTV 1370

Query: 333  TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            T N L+   CD       +++   M+  G  P+  TY+ L+
Sbjct: 1371 TYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLV 1411



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 178/400 (44%), Gaps = 26/400 (6%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----- 89
            L R G I    +LL++M R G+     +++     +C ++K +  A   FK +       
Sbjct: 887  LCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARK-LDSALELFKEMEESGSCP 945

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
            P + T++ ++     S   + A +++  +   G   +   Y++L+    K+GK+D   A+
Sbjct: 946  PDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATAL 1005

Query: 147  FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----PDHITIGAL 197
             + +      P+ V +N +I    + G +D A+ +L EM      VD    P+ +T   L
Sbjct: 1006 LQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEM------VDGGCQPNVVTYTVL 1059

Query: 198  MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            + A    G+ + A  + +++ +         Y   ++   +  + E AC +   M +KG 
Sbjct: 1060 LDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGC 1119

Query: 258  IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            +P+ V  + +I     A KV     +L++  +      I+++++++ A         A E
Sbjct: 1120 VPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYE 1179

Query: 318  LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM-KSLGLCPNTITYSILLVAC 376
            L+  ++     P + T N+L+  LC   +  +   +L +M +  G  P+ ITY+ ++   
Sbjct: 1180 LFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGL 1239

Query: 377  ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY 415
             +   V+    L  Q   DG+ P+ V +  +I  +C  R+
Sbjct: 1240 CKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRF 1279



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 174/395 (44%), Gaps = 16/395 (4%)

Query: 33   NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
            + L++ G++ +   L+EDM  KG       Y +    +CK+ K + EA    + +     
Sbjct: 956  DSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGK-LDEATALLQRMTRSGC 1014

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------ 142
            +P + T+N ++         + A+ +L  + + G + +   YT L+    K GK      
Sbjct: 1015 SPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIG 1074

Query: 143  -VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             V+ M E    P+   +N+L+    +   V+RA  +L+ M  +     P+ ++   ++  
Sbjct: 1075 LVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQK--GCVPNVVSYNTVIAG 1132

Query: 201  CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               A +V     + + +   N       +   I+   +T   + A  +++ + + G  P+
Sbjct: 1133 LCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPN 1192

Query: 261  EVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
             V  ++L+     + + + A  +L+E  + QG S  II+Y++++     +K   +A +L+
Sbjct: 1193 LVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYKLF 1252

Query: 320  EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
              M S  L P   T + +I++LC    + +   VL  M   G  P  ITY  L+    + 
Sbjct: 1253 LQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKT 1312

Query: 380  DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
             +++  L +L      G  P++V F   I   S+R
Sbjct: 1313 GNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKR 1347



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 1/244 (0%)

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D +T   L+     AG++  A E++  +++  +K    V+   +      G    A   +
Sbjct: 160 DTVTYSTLISGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHF 219

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
            +M+K    PD V  + +I+    + +++ A  +L+E  + G +  + SY++++     A
Sbjct: 220 REMSKT-CPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKA 278

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
              + AL L E M +    P V +   +I  LC  DQ+ +   V+  M   G  PN ITY
Sbjct: 279 NRVENALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITY 338

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFN 429
             L+    R  D++  + L+ +  E G  PN + +  I+ +  RR +  R      +   
Sbjct: 339 GTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQ 398

Query: 430 SGRP 433
           +G P
Sbjct: 399 TGCP 402



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 97/490 (19%), Positives = 193/490 (39%), Gaps = 66/490 (13%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------------ 143
           N L++V   +     A  + R   E     D   Y+TLI+   ++GK+            
Sbjct: 130 NCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNR 189

Query: 144 ------------------DA------------MFENVKPDRVVFNALITACGQSGAVDRA 173
                             DA            M +   PD V +N +I    +S  +D A
Sbjct: 190 KGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDA 249

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYT 230
             +L EM    +   P+  +   ++     A +V+ A     ++ +   +G P     YT
Sbjct: 250 IRLLEEMVD--NGFAPNVFSYNTVLHGFCKANRVENA---LWLLEQMVTRGCPPDVVSYT 304

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             IN   +    + AC V D M ++G  P+ +    L+D     G ++ A E++++   +
Sbjct: 305 TVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTER 364

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G     I+Y+++M       + ++A ++ + M      P     + +I+  C   +L + 
Sbjct: 365 GYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREA 424

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 409
            ++L  M   G  P+    S L+ A  +   ++    LL  +      P++V +  +I  
Sbjct: 425 HDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHA 484

Query: 410 MC-SRRYEKARTLNE---------HVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPT 458
           +C ++R  +A +  +          V+++NS    + +++  + A +++     AG +P 
Sbjct: 485 LCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPD 544

Query: 459 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLL 515
           V   S V+       N D   +++E +  +          +LI+G    G  D +AF + 
Sbjct: 545 VVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVD-KAFDVF 603

Query: 516 EEAASFGIVP 525
           +E    G  P
Sbjct: 604 QEMLGCGCAP 613



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 141/324 (43%), Gaps = 39/324 (12%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
            +Y  LI    + G + + +++L+ +  KG    D V  + F +    +  +++A    + 
Sbjct: 1301 TYGTLIDGFCKTGNLDKALEILQLLLSKGSYP-DVVTFSIFIDWLSKRGRLRQAGELLET 1359

Query: 86   -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                 LVP+    T+N L+     +  +E A  +  ++++ G + D   YTTL+      
Sbjct: 1360 MLRAGLVPDTV--TYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLV-- 1415

Query: 141  GKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP---VDPDHITIGAL 197
                        D+  +  L+    +S  VD  F +  E+++++     V+ D     A+
Sbjct: 1416 ------------DKKSYKDLLAEVSKS-MVDTGFKLNHELSSKLEASIEVEADVRLGCAI 1462

Query: 198  MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            +      G    AR+V++ + + N+     +++  +         E A  ++  M  +GV
Sbjct: 1463 VDMFGKCGSPQDARKVFEGMDQRNVV----LWSAMLGVYVFHKQEEQAFGLWRVMGLEGV 1518

Query: 258  IPDEVFLSALIDFAGHAGKVEAAF-EILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
             PD V   +L+    HAG ++AA  E +  +++ G+  G+  +S ++          +A 
Sbjct: 1519 EPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAE 1578

Query: 317  ELYEHMKSIKLKPTVSTMNALITA 340
            +L   M  +  KP+ +T N L++A
Sbjct: 1579 DL---MLGMPCKPSAATWNCLLSA 1599



 Score = 43.9 bits (102), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 282  EILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
            + LQ  +N+   S  + +++ L+     A +   A EL + M    +   V   N +I  
Sbjct: 862  DALQVYRNKLCCSPNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKG 921

Query: 341  LCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
            LC   +L   +E+  +M+  G C P+  TYS ++ +  +   V+    L+      G  P
Sbjct: 922  LCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSP 981

Query: 400  NLVMFKCII-GMCSRRYEKARTLNE 423
            N+V +  ++ G+C     KA  L+E
Sbjct: 982  NVVTYSSLLHGLC-----KAGKLDE 1001



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 14/148 (9%)

Query: 78   KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
            ++A + F+ +    +  ++ ++ V    K  E AF + R++   G++ D   + +L+T C
Sbjct: 1473 QDARKVFEGMDQRNVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLSLLTMC 1532

Query: 138  AKSGKVDAMFEN---------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
              +G +DA  +          ++P    F+ +I   G+ G V+ A D++  M     P  
Sbjct: 1533 CHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVNEAEDLMLGM-----PCK 1587

Query: 189  PDHITIGALMKACANAGQVDRAREVYKM 216
            P   T   L+ A    G  +RA  V ++
Sbjct: 1588 PSAATWNCLLSAYKICGDFERALRVAEL 1615


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 160/321 (49%), Gaps = 16/321 (4%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFEN--------VKPDRVVFNALITACGQSGA 169
           V   G + D   Y TLI    K G+  A  +         V+P+ V+++ +I    +   
Sbjct: 153 VVAMGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKH 212

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           V+ AFD+ +EM ++   + P+ +T  AL+      GQ+  A +++  +   NIK  P+VY
Sbjct: 213 VNDAFDLYSEMVSK--GISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIK--PDVY 268

Query: 230 T--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           T  I ++   + G  +   +V+  M K+G+ P+ V   +L+D      +V  A  IL   
Sbjct: 269 TFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTM 328

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
             +G++  I SY+ L+      K   +A+ L++ M    + P V T N+LI  LC   ++
Sbjct: 329 SQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKI 388

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
              ++++ +M   G+ P+ ITYS +L A  +   V+  + LL++ K+ G+ PN+  +  +
Sbjct: 389 SYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTIL 448

Query: 408 I-GMC-SRRYEKARTLNEHVL 426
           I G+C   R E A  + E +L
Sbjct: 449 IDGLCKGGRLEDAHNIFEDLL 469



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 158/346 (45%), Gaps = 12/346 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM-- 146
           P +  ++ ++      K    AF +   +   G+  +   Y+ LI+     G++ DA+  
Sbjct: 195 PNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDL 254

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 EN+KPD   FN L+    + G +     V A M  +   + P+ +T  +LM   
Sbjct: 255 FNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQ--GIKPNVVTYCSLMDGY 312

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               +V++A+ +   + +  +    + Y I I+   +    + A +++ +M  K +IPD 
Sbjct: 313 CLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDV 372

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  ++LID     GK+  A +++ E  ++G+   II+YSS++ A        KA+ L   
Sbjct: 373 VTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTK 432

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +K   ++P + T   LI  LC G +L     +  D+   G      TY++++     K  
Sbjct: 433 LKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGL 492

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNEHV 425
            +  L LLS+ K++  IP+ V ++ II     + E  KA  L E +
Sbjct: 493 FDEALALLSKMKDNSCIPDAVTYEIIIRSLFDKDENDKAEKLREMI 538


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 168/382 (43%), Gaps = 19/382 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L R+G+  +  D +  ME  G+      Y+      C   K  + A + FK + +   
Sbjct: 225 NILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGK-FEAASKIFKTMKDKNL 283

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            P   T+N  +S     +  E A  VL  + E+GL  +   Y  LI  C   G +D  F 
Sbjct: 284 KPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFA 343

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    +      +N LI A      ++ A D++ EM  +   V+PD +T    +  
Sbjct: 344 YRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREK--GVEPDVVTYNIQING 401

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G   +A  ++  + + NI+ T E YT  I+   +      A   +    K+G++PD
Sbjct: 402 YCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPD 461

Query: 261 EVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
            +  +ALID  GH   G ++ AF++L+E  N  +    +++++LM      +  ++A +L
Sbjct: 462 IIMFNALID--GHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKL 519

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            + MK   +KP   + N LI+       +   +EV  +M SLG  P  +TY+ L+    +
Sbjct: 520 LDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSK 579

Query: 379 KDDVEVGLMLLSQAKEDGVIPN 400
             + +    LL + +  G+ P+
Sbjct: 580 IGEADHAEELLREMQSKGITPD 601



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 158/328 (48%), Gaps = 12/328 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P + T+N +++        E A ++ + +++  LK DC  Y + I+   K  +++     
Sbjct: 250 PNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGV 309

Query: 146 ----MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               +   + P+ V +NALI  C   G +D+AF    EM      +     T   L+ A 
Sbjct: 310 LCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMN--RGIVASVFTYNLLIHAL 367

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               +++ A ++ K + +  ++     Y I IN   + G+ + A S++D+M +K + P  
Sbjct: 368 FLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTV 427

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
              ++LID  G   ++  A E  +++  +G+   II +++L+ G C N  N  +A +L +
Sbjct: 428 ETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNG-NIDRAFQLLK 486

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M + K+ P   T N L+   C   ++ +  ++L +MK  G+ P+ I+Y+ L+    ++ 
Sbjct: 487 EMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRG 546

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           D++  L +  +    G  P L+ +  +I
Sbjct: 547 DMKDALEVFDEMLSLGFDPTLLTYNALI 574



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 125/264 (47%), Gaps = 3/264 (1%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           N+K   V FN +I    + G   +A D +  M  EV+ V P+ +T   ++      G+ +
Sbjct: 212 NIKSSIVTFNIMINILCREGKWKKAKDFIGHM--EVYGVKPNVVTYNTVINGYCLRGKFE 269

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A +++K +   N+K     Y   I+   +    E A  V   + + G++P+ V  +ALI
Sbjct: 270 AASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALI 329

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           D   + G ++ AF    E  N+GI   + +Y+ L+ A    K  ++A ++ + M+   ++
Sbjct: 330 DGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVE 389

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P V T N  I   C      K + +  +M    + P   TY+ L+    +++ +      
Sbjct: 390 PDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEK 449

Query: 389 LSQAKEDGVIPNLVMFKCII-GMC 411
             ++ ++G++P+++MF  +I G C
Sbjct: 450 FKKSIKEGMLPDIIMFNALIDGHC 473



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 99/223 (44%)

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T   ++      G+  +A++    +  Y +K     Y   IN     G +E A  ++  
Sbjct: 218 VTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKT 277

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M  K + PD    ++ I       ++E A  +L +    G+    ++Y++L+  C N  +
Sbjct: 278 MKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGD 337

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             KA    + M +  +  +V T N LI AL    ++ +  +++ +M+  G+ P+ +TY+I
Sbjct: 338 LDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEPDVVTYNI 397

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
            +    R  + +  L L  +  E  + P +  +  +I +  +R
Sbjct: 398 QINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKR 440



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 63/138 (45%)

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           ++ A+ + +E     I   I++++ ++        W+KA +   HM+   +KP V T N 
Sbjct: 198 IKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNT 257

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           +I   C   +     ++   MK   L P+  TY+  +    ++  +E    +L +  E G
Sbjct: 258 VINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESG 317

Query: 397 VIPNLVMFKCIIGMCSRR 414
           ++PN V +  +I  C  +
Sbjct: 318 LVPNAVTYNALIDGCCNK 335


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 176/405 (43%), Gaps = 60/405 (14%)

Query: 23  HDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V   ++SY   IR     GR  E   +L+ ME +G               CK      
Sbjct: 245 HGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEG---------------CK------ 283

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
                      P + T  +L+ +   +     A  V   ++ +  K D   Y TL+  C 
Sbjct: 284 -----------PDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDKCG 332

Query: 139 KSG------------KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
            +G            K D   +NV    V + A++ A  Q G VD A DV  +M  +   
Sbjct: 333 DNGDSRSVIEIWNAMKADGYNDNV----VAYTAVVDALCQVGRVDEASDVFDQMKQK--G 386

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWE 243
           ++P   +  +L+     A +++ A E++  +   NI G TP  YT  + IN   ++G+  
Sbjct: 387 IEPQQYSYNSLISGFLKADRLNHALELFNHM---NIHGPTPNGYTYVLFINYYGKSGESL 443

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A   Y+ M  KG++PD V  +A++     +G++  A  +  E K+ G+    I+Y+ ++
Sbjct: 444 KAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMI 503

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
             CS A N  +A++++  M   +  P V  +N+LI  L    +  +  ++  ++K + L 
Sbjct: 504 KCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLD 563

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           P   TY+ LL    R+  V+  + LL +   +   PNL+ +  ++
Sbjct: 564 PTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVL 608



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 143/321 (44%), Gaps = 11/321 (3%)

Query: 97   MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENVK-- 151
            ++  +C S K  E A ++++  +  G+      Y  LI        +D    +F  +K  
Sbjct: 747  LIRHLCKSKKALE-AHELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRL 805

Query: 152  ---PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
               PD   +N ++ A G+S  ++    V  EM+ + +  +  ++T   ++     +  + 
Sbjct: 806  GCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGY--ESTYVTYNTIISGLVKSKMLY 863

Query: 209  RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
             A ++Y  +       TP  Y   ++   + G  E A  ++D+M   G  P+    + L+
Sbjct: 864  EAMDLYYKLMSEGFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILL 923

Query: 269  DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
            +    AG  E   E+ Q   +QGI+  I SY+ L+GA   A     +L  +  +  + L+
Sbjct: 924  NGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLE 983

Query: 329  PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
            P + T N LI  L    +L + + + +DM+  G+ PN  TY+ L++   ++        +
Sbjct: 984  PDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKM 1043

Query: 389  LSQAKEDGVIPNLVMFKCIIG 409
              +  ++G  PN+  +  +IG
Sbjct: 1044 YEELLKNGWKPNVFTYNALIG 1064



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 145/366 (39%), Gaps = 16/366 (4%)

Query: 79  EAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           EA + FK V        T  + N ++ +  +        QV  L+Q   +KA+   + T+
Sbjct: 94  EALQLFKSVAQQPRIVHTTESCNYMLELMRAHGRVRDMAQVFDLMQRQIVKANVGTFLTI 153

Query: 134 ITTCAKSGKVDA-------MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
             +    G + +       M E  +  +   +N LI    +SG    A +V   M  +  
Sbjct: 154 FRSLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGLIYFLVKSGYDREAMEVYKVMATD-- 211

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + P   T   LM A      V+    + + +  + +K     YTI I    Q G +E A
Sbjct: 212 GIVPSVRTYSVLMLAFGKR-DVETVVWLLREMEDHGVKPNVYSYTICIRVLGQAGRFEEA 270

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +   M  +G  PD V  + LI     AG+V  A ++  + K        ++Y +L+  
Sbjct: 271 YKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKPDRVTYITLLDK 330

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           C +  + +  +E++  MK+      V    A++ ALC   ++ +  +V   MK  G+ P 
Sbjct: 331 CGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQ 390

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
             +Y+ L+    + D +   L L +     G  PN   +   I    +  E  + +  + 
Sbjct: 391 QYSYNSLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYE 450

Query: 426 LSFNSG 431
           L  + G
Sbjct: 451 LMKSKG 456



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 138/325 (42%), Gaps = 19/325 (5%)

Query: 25   VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
            VS +  SYN LI     +  I     L  +M+R G  D D+  +    +       I++ 
Sbjct: 772  VSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGC-DPDEFTYNLILDAMGKSMRIEDM 830

Query: 81   FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             +  K +       T  T+N ++S    SK    A  +   +   G       Y  L+  
Sbjct: 831  LKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDG 890

Query: 137  CAKSGKV-------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
              K GK+       D M +   KP+R ++N L+     +G  ++  ++   M  +   ++
Sbjct: 891  LLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQ--GIN 948

Query: 189  PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
            PD  +   L+ A   AG+++ +   ++ + +  ++     Y + I+   ++G  E A S+
Sbjct: 949  PDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSL 1008

Query: 249  YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            ++DM K G+ P+    ++LI + G  GK   A ++ +E    G    + +Y++L+G  S 
Sbjct: 1009 FNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGGYSV 1068

Query: 309  AKNWQKALELYEHMKSIKLKPTVST 333
            + +   A   Y  M      P  ST
Sbjct: 1069 SGSTDNAFASYGQMIVGGCPPNSST 1093



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/426 (22%), Positives = 174/426 (40%), Gaps = 56/426 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFRFFKLVP-N 89
           N   + G   + I   E M+ KG++      +A  +++ KS +    K  F   K +   
Sbjct: 434 NYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVC 493

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   T+ M++  C+ + +++ A +V   + E     D     +LI T  K+G+ +  ++ 
Sbjct: 494 PDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTLYKAGRGNEAWKI 553

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  N+ P    +N L+   G+ G V     +L EMN+  +P  P+ IT   ++   
Sbjct: 554 FHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYP--PNLITYNTVLDCL 611

Query: 202 ANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              G+V+ A     M++   +KG  P++  Y  A++   +      A  ++  M KK + 
Sbjct: 612 CKNGEVNYA---LGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAFRIFCQM-KKVLA 667

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQE-----------AKNQGISVGIISYSSLMGACS 307
           PD   L  ++      G +  A   L+E           +    +  GI+  + +  +  
Sbjct: 668 PDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSKADRSSFHSLMEGILKRAGMEKSIE 727

Query: 308 NAKNW----------------------QKALELYEHMK---SIKLKPTVSTMNALITALC 342
            A+N                       +KALE +E +K   S+ +     + NALI  L 
Sbjct: 728 FAENIALSRILLDDFFLSPLIRHLCKSKKALEAHELVKKFESLGVSLKTGSYNALICGLV 787

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
           D + +     + S+MK LG  P+  TY+++L A  +   +E  L +  +    G     V
Sbjct: 788 DENLIDVAEGLFSEMKRLGCDPDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYV 847

Query: 403 MFKCII 408
            +  II
Sbjct: 848 TYNTII 853


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 85/390 (21%), Positives = 182/390 (46%), Gaps = 19/390 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----- 87
           +RL +  ++ E   + E   ++G  + D V +    +    +  + EA+R F+ +     
Sbjct: 165 DRLCKARKLEEAYKIFESASQRGC-NPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGH 223

Query: 88  -PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA- 145
             NP + T +++ +     +  +G  ++ + +   G K D  L  T +    K+G+V+  
Sbjct: 224 NANPVVYT-SLIRNFFIHGRKEDG-HKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKG 281

Query: 146 --MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
             +FE+++     PD   ++ LI    ++G      ++   M  +   +D       A++
Sbjct: 282 RMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDAR--AYNAVV 339

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                +G+V +A E+ + + +  ++ T   Y   ++  ++    + A  ++++   KG+ 
Sbjct: 340 DGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSKGIE 399

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
            + V  S+LID  G  G+++ A+ IL+E   +G++  + +++SL+ A   A+   +AL  
Sbjct: 400 LNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVC 459

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++ MK +K  P   T + LI  LC   +  K      DM+  GL PN +TY+ ++    +
Sbjct: 460 FQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAK 519

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             ++     L  + K +G IP+   F  +I
Sbjct: 520 VGNITDAYSLFERFKANGGIPDAASFNALI 549



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 181/431 (41%), Gaps = 59/431 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           S+N ++    ++ ++ E + L E M++    +    Y+     +C   + ++EA+R    
Sbjct: 90  SFNSILTCLGKKRKVDEALSLFEVMKKDAEPN-SSTYNIIIDMLCLGGR-VEEAYRILDE 147

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + +    P L T N+++     ++  E A+++     + G   DC  Y +LI    K G+
Sbjct: 148 MEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQ 207

Query: 143 VDA---MFE-------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           VD    +FE       N  P  VV+ +LI      G  +    +  E+        PD  
Sbjct: 208 VDEAYRLFEKMLDAGHNANP--VVYTSLIRNFFIHGRKEDGHKIFKELIR--RGCKPDLT 263

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
            +   M     AG+V++ R +++ I  Y        Y+I I+  ++ G      +++  M
Sbjct: 264 LLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAM 323

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL---------------------------- 284
            ++G   D    +A++D    +GKV  A+EIL                            
Sbjct: 324 KQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRL 383

Query: 285 -------QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
                  +EAK++GI + ++ YSSL+          +A  + E M    L P V T N+L
Sbjct: 384 DEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSL 443

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           + AL   +++ + +     MK +   PNT TYSIL+    R        +     ++ G+
Sbjct: 444 LDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGL 503

Query: 398 IPNLVMFKCII 408
           +PN+V +  +I
Sbjct: 504 VPNVVTYTTMI 514



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/464 (19%), Positives = 184/464 (39%), Gaps = 75/464 (16%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFENVKPDRVV-----FNALIT 162
           A++    ++  GLK D   YT++I    K+G++   + +F  ++ +R V     +N +I 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
             G +G  + A+ +L  +        P  ++  +++       +VD A  +++++ K + 
Sbjct: 62  GYGSAGRFEDAYKLLERLRE--RGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKK-DA 118

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           +     Y I I+     G  E A  + D+M    + P+ + ++ ++D    A K+E A++
Sbjct: 119 EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYK 178

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM-------------------- 322
           I + A  +G +   ++Y SL+          +A  L+E M                    
Sbjct: 179 IFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFF 238

Query: 323 ---------KSIK------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                    K  K       KP ++ +N  +  +    ++ K   +  D++S G  P+  
Sbjct: 239 IHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVR 298

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHV 425
           +YSIL+    +         +    K+ G   +   +  ++ G C S +  KA  + E +
Sbjct: 299 SYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEM 358

Query: 426 LSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 485
                                 +E  V  T+ T   +   L  +     A +     ++ 
Sbjct: 359 ----------------------KEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKSK 396

Query: 486 GVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCV 527
           G+  + +  S   SLIDGFG+      A+ +LEE    G+ P V
Sbjct: 397 GIELNVVLYS---SLIDGFGKVGRIDEAYLILEEMMKKGLTPNV 437



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/361 (21%), Positives = 144/361 (39%), Gaps = 54/361 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFKLVPNPT 91
           L ++G++ E   L E M   G      VY +    FF   + +   K      +    P 
Sbjct: 202 LGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPD 261

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDAMFE 148
           L+  N  M     + + E    +   ++  G   D + Y+ LI    K+G+      +F 
Sbjct: 262 LTLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFH 321

Query: 149 NVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            +K      D   +NA++    +SG V +A+++L EM  +   V P   T GA++   A 
Sbjct: 322 AMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKEKC--VQPTVATYGAIVDGLA- 378

Query: 204 AGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             ++DR  E Y +  +   KG      +Y+  I+   + G  + A  + ++M KKG+ P+
Sbjct: 379 --KIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 436

Query: 261 EVFLSALIDFAGHA-----------------------------------GKVEAAFEILQ 285
               ++L+D    A                                    K   AF   Q
Sbjct: 437 VYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQ 496

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           + + QG+   +++Y++++   +   N   A  L+E  K+    P  ++ NALI  + + +
Sbjct: 497 DMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNAN 556

Query: 346 Q 346
           +
Sbjct: 557 R 557



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 132/298 (44%), Gaps = 18/298 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           + + G + +   + ED+   G L   + Y      + K+ +A +E    F  +     + 
Sbjct: 272 VFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQA-RETSNIFHAMKQQGFAL 330

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MF 147
               +N ++     S     A+++L  ++E  ++     Y  ++   AK  ++D    +F
Sbjct: 331 DARAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLF 390

Query: 148 ENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           E  K      + V++++LI   G+ G +D A+ +L EM  +   + P+  T  +L+ A  
Sbjct: 391 EEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKK--GLTPNVYTWNSLLDALV 448

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            A +++ A   ++ + +         Y+I IN   +   +  A   + DM K+G++P+ V
Sbjct: 449 KAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVV 508

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
             + +I      G +  A+ + +  K  G      S+++L+   SNA    +A+E Y+
Sbjct: 509 TYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMSNA---NRAMEAYQ 563


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 184/410 (44%), Gaps = 19/410 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   ++G + E   L + ++  G    + + +    N     + I +A   ++ +     
Sbjct: 344 NAFCKEGNVVEARKLFDGLKEMGF-SPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGI 402

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   TFN+L+S        E   ++L+ +   GL  D  L+   ++    +G++D   E
Sbjct: 403 APDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAME 462

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMK 199
                    + P  + FN++I A  Q+G  D+AF+    M   VH  + P   T  +L+ 
Sbjct: 463 FLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLM---VHFGLTPSPSTCSSLLM 519

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
             +  G++  A E+   + +  +      +T+ ++   + GD   A S++ +M ++G+ P
Sbjct: 520 GLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFP 579

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  SA ID     G VE A+ +  E   +G+     +Y+SL+          +AL+L 
Sbjct: 580 DVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLE 639

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M+   L P + T N +I  LC   ++   + V  DM   GL P+ ITY+ L+    + 
Sbjct: 640 KVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKA 699

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLS 427
            D+     L+++    G  P+L  +   I G C SRR  +A  + + ++S
Sbjct: 700 FDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVS 749



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 149/339 (43%), Gaps = 18/339 (5%)

Query: 88  PNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--- 143
           P P   TF+ +++  C       G   +L L+ +   + +   Y  +I  C   G+    
Sbjct: 262 PQPCKYTFSGIILGFCRKGCIHLGE-SLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDA 320

Query: 144 ----DAMFE-NVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIG 195
               + M E    P  V FN +I A  + G V  A   FD L EM        P+ I   
Sbjct: 321 LAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMG-----FSPNAIMYN 375

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            LM       ++D+A  +Y+ + K  I      + I ++   + G  E    +  D++  
Sbjct: 376 TLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVL 435

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G++PD       +     AG+++ A E L +   +G+S  II+++S++ A S A    KA
Sbjct: 436 GLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKA 495

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            E Y+ M    L P+ ST ++L+  L    +L +  E++  M   GL  N + +++LL  
Sbjct: 496 FEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDK 555

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
             ++ DV     L  + +  G+ P++V F   I   S++
Sbjct: 556 FFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQ 594



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 175/406 (43%), Gaps = 57/406 (14%)

Query: 31  SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRF---F 84
           S + L   GR+ E ++ L DM  KGL      ++   A +       KA  EA++    F
Sbjct: 447 SVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAF-EAYKLMVHF 505

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV- 143
            L P+P+  + ++LM +  + +  E A +++  + E GL  +   +T L+    K G V 
Sbjct: 506 GLTPSPSTCS-SLLMGLSINGRLQE-ATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVV 563

Query: 144 -------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                  +     + PD V F+A I    + G V+ A++V  EM  +   + P++    +
Sbjct: 564 GAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRK--GLIPNNFAYNS 621

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+      G+++ A ++ K+                                   M  +G
Sbjct: 622 LICGFCKCGKLNEALKLEKV-----------------------------------MRHRG 646

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           ++PD    + +I      G++ +A  +  +    G+S  II+Y++L+     A +   A 
Sbjct: 647 LLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNAD 706

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVA 375
            L   M +    P ++T N  I   C   ++ + + +L ++ S G+ PNT+TY S+L   
Sbjct: 707 NLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSMLNGV 766

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
           C   D ++  ++L ++  +   +PN+V    ++    ++    RTL
Sbjct: 767 CS--DILDRAMILTARLLKMAFVPNVVTANLLLSQFYKQGMPERTL 810



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 88/228 (38%), Gaps = 27/228 (11%)

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           SLM A  NA+   +ALE+   M+ + ++P+ S +  L   L          ++  D+   
Sbjct: 201 SLMRAFVNAEMGFQALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRR 260

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 420
           G  P   T+S +++   RK  + +G  LL    +    PN   +  +I  C  R      
Sbjct: 261 GPQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIR------ 314

Query: 421 LNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRER 480
                     GR       TS AL  +   I  G  PTV   + V+       N     +
Sbjct: 315 ----------GR-------TSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARK 357

Query: 481 LVENL---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
           L + L   G S +A+  + L +      E D +A  L EE    GI P
Sbjct: 358 LFDGLKEMGFSPNAIMYNTLMNGYVKMREID-QANMLYEEMRKKGIAP 404


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 182/408 (44%), Gaps = 44/408 (10%)

Query: 124 KADCKLYTTLITTCAKSGKVDAMFENV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
           KADC ++  L +T            NV  P   VF+AL +     G V+ A    ++M  
Sbjct: 5   KADCDVFDVLWST-----------RNVCVPGFGVFDALFSVLIDLGMVEEAIQCFSKMKR 53

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
               V P   +   L+   A  G+ D  +  +K +     K T   Y I I+C  + GD 
Sbjct: 54  --FRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDV 111

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           E A  ++++M  +G+IPD V  +++ID  G  G+++      +E K+      +I+Y++L
Sbjct: 112 EAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNAL 171

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +          K LE +  MK   LKP V + + L+ A C    + + ++   DM+ +GL
Sbjct: 172 INCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 231

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR--YEKAR 419
            PN  TY+ L+ A  +  ++     L ++  + GV  N+V +  +I G+C      E   
Sbjct: 232 VPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLH 291

Query: 420 TLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE 479
            L+E V        +++ K T +   V  + +        ++VSK +         D   
Sbjct: 292 LLDEMV--------ELDIKVTVVTFCVLIDGLCKN-----KLVSKAI---------DYFG 329

Query: 480 RLVENLGVSADALKRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIVP 525
           R+  + G+ A+A   +   ++IDG   G     A +L E+ A  G+VP
Sbjct: 330 RISNDFGLQANA---AIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVP 374



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 162/392 (41%), Gaps = 53/392 (13%)

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           FR F     P   + N L+   A    ++G  +  + +  AG K     Y  +I    K 
Sbjct: 54  FRVF-----PKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKE 108

Query: 141 GKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G V+A   +FE +K     PD V +N++I   G+ G +D       EM       +PD I
Sbjct: 109 GDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC--CEPDVI 166

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T  AL+      G++ +  E ++ + +  +K     Y+  ++   + G  + A   Y DM
Sbjct: 167 TYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDM 226

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            + G++P+E   ++LID     G +  AF +  E    G+   +++Y++L+      +N 
Sbjct: 227 RRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENP 286

Query: 313 QKALELYEHMKSIKLKPTVSTM------------------------------------NA 336
            + L L + M  + +K TV T                                      A
Sbjct: 287 TEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTA 346

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           +I  LC G+Q+     +   M   GL P+   Y+ L+    ++ +V   L L  +  E G
Sbjct: 347 MIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETG 406

Query: 397 VIPNLVMFKCIIGMCSR--RYEKARTLNEHVL 426
           +  +L+ +  ++   S   + +KAR+  E ++
Sbjct: 407 MKLDLLAYTSLVWGLSHCNQLQKARSFLEEMI 438



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/350 (21%), Positives = 144/350 (41%), Gaps = 53/350 (15%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    ++G +     L E+M+ +GL+     Y++      K  + + +   FF+ 
Sbjct: 97  TYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGR-LDDTVCFFEE 155

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + +    P + T+N L++  C   K  +G  +  R ++  GLK +   Y+TL+    K G
Sbjct: 156 MKDMCCEPDVITYNALINCFCKFGKLPKG-LEFFREMKRNGLKPNVVSYSTLVDAFCKEG 214

Query: 142 K--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEM-------NAEVH- 185
                    VD     + P+   + +LI A  + G +  AF +  EM       N   + 
Sbjct: 215 MMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYT 274

Query: 186 -----------PVDPDH--------------ITIGALMKACANAGQVDRAREVYKMI-HK 219
                      P +  H              +T   L+        V +A + +  I + 
Sbjct: 275 ALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISND 334

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
           + ++    +YT  I+   +    E A ++++ M +KG++PD    ++L+D     G V  
Sbjct: 335 FGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLE 394

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
           A  +  +    G+ + +++Y+SL+   S+    QKA    E M    + P
Sbjct: 395 ALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHP 444


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 133/560 (23%), Positives = 243/560 (43%), Gaps = 46/560 (8%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---- 87
           ++ LI  G + E I     M+R  +    +  +       K  K   +  RFFK +    
Sbjct: 67  FSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKT-DDVKRFFKDMIGAG 125

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--- 144
             PT+ T+N+++       D E A  +   ++  GL  D   Y ++I    K G++D   
Sbjct: 126 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 185

Query: 145 AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             FE +K     PD + +NALI    + G +    +   EM    + + P+ ++   L+ 
Sbjct: 186 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKG--NGLKPNVVSYSTLVD 243

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A    G + +A + Y  + +  +      YT  I+   + G+   A  + ++M + GV  
Sbjct: 244 AFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEW 303

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V  +ALID    A +++ A E+  +    G+   + SY++L+     AKN  +ALEL 
Sbjct: 304 NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELL 363

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             +K   +KP +      I  LC  +++     V+++MK  G+  N++ Y+ L+ A  + 
Sbjct: 364 NELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 423

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY-EKA-----RTLNEHVLSFNSG- 431
            +   GL LL + KE  +   +V F  +I G+C  +   KA     R  N+  L  N+  
Sbjct: 424 GNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAI 483

Query: 432 -----RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA----DIRERLV 482
                    ++     A  ++ + +  G +P     + ++       N      +R+++ 
Sbjct: 484 FTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMA 543

Query: 483 ENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP----CVSF----KEI 532
           E +G+  D L  +   SL+ G    +   +A S LEE    GI P    C+S      E+
Sbjct: 544 E-IGMKLDLLAYT---SLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYEL 599

Query: 533 PVVVDARKLEIHTAKVYLLT 552
             + +A +L+ +  K  LLT
Sbjct: 600 GCIDEAVELQSYLMKHQLLT 619



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 141/301 (46%), Gaps = 16/301 (5%)

Query: 124 KADCKLYTTLITTCAKSGKVDAMFENV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
           KADC ++  L +T            NV  P   VF+AL +     G ++ A    ++M  
Sbjct: 40  KADCDVFDVLWST-----------RNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKR 88

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
               V P   +   L+   A  G+ D  +  +K +     + T   Y I I+C  + GD 
Sbjct: 89  --FRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDV 146

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           E A  ++++M  +G++PD V  +++ID  G  G+++      +E K+      +I+Y++L
Sbjct: 147 EAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNAL 206

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +            LE Y  MK   LKP V + + L+ A C    + + ++   DM+ +GL
Sbjct: 207 INCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 266

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKART 420
            PN  TY+ L+ A  +  ++     L ++  + GV  N+V +  +I G+C + R ++A  
Sbjct: 267 VPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEE 326

Query: 421 L 421
           L
Sbjct: 327 L 327



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 143/317 (45%), Gaps = 20/317 (6%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++Y  LI    + G +S+   L  +M + G+      Y A    +C +++ +KEA   F 
Sbjct: 271 YTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAER-MKEAEELFG 329

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P L+++N L+     +K+ + A ++L  ++  G+K D  LY T I       
Sbjct: 330 KMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLE 389

Query: 142 KVDA----MFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K++A    M E     +K + +++  L+ A  +SG       +L EM      ++   +T
Sbjct: 390 KIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKE--LDIEVTVVT 447

Query: 194 IGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              L+        V +A + +  I + + ++    ++T  I+   +    E A ++++ M
Sbjct: 448 FCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQM 507

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            +KG++PD    ++L+D     G V  A  +  +    G+ + +++Y+SL+   S+    
Sbjct: 508 VQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQL 567

Query: 313 QKALELYEHMKSIKLKP 329
           QKA    E M    + P
Sbjct: 568 QKARSFLEEMIGEGIHP 584



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 103/489 (21%), Positives = 194/489 (39%), Gaps = 94/489 (19%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN LI    + G++   ++   +M+  GL      Y       CK +  +++A +F+  
Sbjct: 202 TYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCK-EGMMQQAIKFYVD 260

Query: 85  ----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                LVPN    T+  L+       +   AF++   + + G++ +   YT LI     +
Sbjct: 261 MRRVGLVPNEY--TYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDA 318

Query: 141 ----------GKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
                     GK+D     V P+   +NALI    ++  +DRA ++L E+      + PD
Sbjct: 319 ERMKEAEELFGKMDTA--GVIPNLASYNALIHGFVKAKNMDRALELLNELKG--RGIKPD 374

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG---------- 240
            +  G  +    +  +++ A+ V   + +  IK    +YT  ++   ++G          
Sbjct: 375 LLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLD 434

Query: 241 -----DWEFA----CSVYDDMTKK-----------------GVIPDEVFLSALIDFAGHA 274
                D E      C + D + K                  G+  +    +A+ID     
Sbjct: 435 EMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKD 494

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
            +VEAA  + ++   +G+     +Y+SLM       N  +AL L + M  I +K  +   
Sbjct: 495 NQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAY 554

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK--------DDVEVGL 386
            +L+  L   +QL K    L +M   G+ P+     +L ++  +K        + VE+  
Sbjct: 555 TSLVWGLSHCNQLQKARSFLEEMIGEGIHPD----EVLCISVLKKHYELGCIDEAVELQS 610

Query: 387 MLLSQ----AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            L+      +  D  +PN+   + ++   SR +E+  T             +I N    L
Sbjct: 611 YLMKHQLLTSDNDNALPNIYSDQNLVS--SREHEEQET-------------RISNLQPKL 655

Query: 443 ALMVYREAI 451
            L +Y+ AI
Sbjct: 656 LLGIYKLAI 664


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 149/333 (44%), Gaps = 12/333 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
           NP +  FN +M   A S + E A +V + + E+G K D   Y  LI   AK GK+D    
Sbjct: 42  NPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLK 101

Query: 146 -----MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                +     P    +++L+ A  ++  VD A  +  EM    H   PD +    L+  
Sbjct: 102 ILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGH--HPDRLMFYELILG 159

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              AG+V  A E +K + K+  +    VY + ++    +G  E A +++ +M      PD
Sbjct: 160 LCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPD 219

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + L+D    A +VE   ++ +  +  G    +I++S+L+         +KALE++ 
Sbjct: 220 VVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFG 279

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERK 379
            M     KP   T   LI+ LC  +++ +  E+   M    + P+ + Y+ L+   C+R 
Sbjct: 280 SMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRG 339

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
              E   +    +   G+ P +V F  +I G C
Sbjct: 340 SMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFC 372



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 148/330 (44%), Gaps = 13/330 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           T++ ++         E +++VL  +  AG   D   +  ++   A+S  ++   E     
Sbjct: 12  TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 71

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                KPD V ++ LI    + G +D +  +L+EM   +    P      +L++A A A 
Sbjct: 72  VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMV--MRGQTPSMQAYSSLVRALAKAR 129

Query: 206 QVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           +VD A  ++ +MI   +       Y + +  C Q G  + A   +  M K G  P+    
Sbjct: 130 RVDHASSLFDEMIRGGHHPDRLMFYELILGLC-QAGKVKDASERFKQMPKHGCQPNVPVY 188

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + L+     +G++E A  +  E K+   S  +++Y++L+ A   A+  ++  +L+E M++
Sbjct: 189 NVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRA 248

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
               P V T + LI  LC   +L K +EV   M   G  PN  TY+ L+    R + V  
Sbjct: 249 AGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQ 308

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
              L  +  +  + P+ V +  +I G C R
Sbjct: 309 ARELFEKMTQACIPPDAVAYNSLIAGYCKR 338



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 143/315 (45%), Gaps = 11/315 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P++  ++ L+   A ++  + A  +   +   G   D  ++  LI    ++GKV    E
Sbjct: 112 TPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASE 171

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             K        P+  V+N L+     SG +++A  + AEM +  H   PD +T   L+ A
Sbjct: 172 RFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKS--HSCSPDVVTYNTLLDA 229

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              A +V+   ++++ +           ++  I+   +TG+ E A  V+  M + G  P+
Sbjct: 230 VCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPN 289

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           +   + LI     A KV  A E+ ++     I    ++Y+SL+       +  +A +LY 
Sbjct: 290 KYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYR 349

Query: 321 HMKS-IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
            M     L+PT+ T N LI   C   +L +  E++++M + GL  ++ TY IL+    R 
Sbjct: 350 EMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRA 409

Query: 380 DDVEVGLMLLSQAKE 394
             ++  L +  Q +E
Sbjct: 410 TKLDEALEVYKQMRE 424



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 151/321 (47%), Gaps = 18/321 (5%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGA 169
           +++  + A+   Y+++I +  K  K +  ++           PD   FN ++    +S  
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TP-- 226
           +++A +V   M    +   PD+++   L+   A  G++D   E  K++ +  ++G TP  
Sbjct: 61  MEKAREVYQHMVESGY--KPDNVSYHILIHGLAKIGKLD---ESLKILSEMVMRGQTPSM 115

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           + Y+  +   ++    + A S++D+M + G  PD +    LI     AGKV+ A E  ++
Sbjct: 116 QAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQ 175

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               G    +  Y+ L+    ++   ++A  L+  MKS    P V T N L+ A+C   +
Sbjct: 176 MPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARR 235

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           + +  ++   M++ G  PN IT+S L+    R  ++E  L +     E G  PN   +  
Sbjct: 236 VEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTT 295

Query: 407 II-GMC-SRRYEKARTLNEHV 425
           +I G+C + +  +AR L E +
Sbjct: 296 LISGLCRAEKVIQARELFEKM 316



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 166/382 (43%), Gaps = 20/382 (5%)

Query: 29  LHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           + +Y+ L+R      R+     L ++M R G      +++     +C++ K +K+A   F
Sbjct: 115 MQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGK-VKDASERF 173

Query: 85  KLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           K +P     P +  +N+L+    SS   E A  +   ++      D   Y TL+    K+
Sbjct: 174 KQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKA 233

Query: 141 GKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            +V+    +FE ++     P+ + F+ LI    ++G +++A +V   M        P+  
Sbjct: 234 RRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEA--GCKPNKY 291

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+     A +V +ARE+++ + +  I      Y   I    + G  + A  +Y +M
Sbjct: 292 TYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREM 351

Query: 253 TK-KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           +   G+ P  V  + LID     GK+  A E++ E   +G++    +Y  L+   S A  
Sbjct: 352 SGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATK 411

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +ALE+Y+ M+  K      +  + +  LC    + +   V    +  G  PN  T+ I
Sbjct: 412 LDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRI 471

Query: 372 LLVACERKDDVEVGLMLLSQAK 393
           L  +  +   VE    L+  AK
Sbjct: 472 LSESLIKLGRVEDAQKLMEPAK 493



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 124/288 (43%), Gaps = 18/288 (6%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---Q 74
           +H  S  + +YN L+    +  R+ E   L E M   G +     +      +C++   +
Sbjct: 213 SHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELE 272

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           KA++      +    P   T+  L+S    ++    A ++   + +A +  D   Y +LI
Sbjct: 273 KALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLI 332

Query: 135 TTCAKSGKVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
               K G +D   +          ++P  V FN LI    + G + RA +++AEM  +  
Sbjct: 333 AGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTK-- 390

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            +  D  T   L+   + A ++D A EVYK + +      P      +    +TG+ + A
Sbjct: 391 GLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQA 450

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
            +V++   K G +P+      L +     G+VE A ++++ AK + I+
Sbjct: 451 YAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPAKARDIT 498


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 125/527 (23%), Positives = 226/527 (42%), Gaps = 80/527 (15%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  +++YN LIR     G + + +    +MER G L     Y+      CK  + I EA
Sbjct: 210 VSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR-IDEA 268

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F   K + +    P L ++N++++        + A+++L   +E G K            
Sbjct: 269 FGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEIL---EEMGYKG----------- 314

Query: 137 CAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                          PD V +N L+    + G   +A  + AEM    + V P  +T  A
Sbjct: 315 -------------FTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVR--NGVSPSVVTYTA 359

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ +   A  ++RA E +  +    ++     YT  I+  S+ G    A  + ++MT+ G
Sbjct: 360 LINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESG 419

Query: 257 VIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
             P  V  +A I   GH    ++E A  ++QE   +G++  ++SYS+++          +
Sbjct: 420 FSPSVVTYNAFIH--GHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDR 477

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ++ + M    + P   T ++LI  LC+  +L +  ++  +M  +GL P+  TY+ L+ 
Sbjct: 478 AFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLIN 537

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 434
           A   + D+   L L  +    G +P+ V +  +I   ++   +ART     L F      
Sbjct: 538 AYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNK---QARTREAKRLLFK----- 589

Query: 435 IENKWTSLALMVYREAIVA-----------GTIPTVEVVSKVLG-CLQ-LPYNAD-IRER 480
                     ++Y E++ +             I    VV+ + G C++ L + AD + E 
Sbjct: 590 ----------LIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFES 639

Query: 481 LVENLGVSADALKRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIVP 525
           +VE      +A+       +I G   G   P+AF+L +E    G VP
Sbjct: 640 MVERNHKPGEAVYN----VIIHGHCRGGNLPKAFNLYKEMIHSGFVP 682



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/443 (21%), Positives = 183/443 (41%), Gaps = 63/443 (14%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-GKVDA 145
           V N + + F++++   +     + A   + L + +G       Y +++    +S G V  
Sbjct: 137 VYNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKL 196

Query: 146 MFENV---------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
             E V          P+   +N LI      G + +      EM  E +   P+ +T   
Sbjct: 197 SAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEM--ERNGCLPNVVTYNT 254

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ A    G++D A  + K +    ++     Y + IN   + G  + A  + ++M  KG
Sbjct: 255 LIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKG 314

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
             PDEV  + L++     G    A  I  E    G+S  +++Y++L+ +   A+N  +A+
Sbjct: 315 FTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAM 374

Query: 317 ELYEHMKSIKLK-----------------------------------PTVSTMNALITAL 341
           E ++ M+   L+                                   P+V T NA I   
Sbjct: 375 EFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGH 434

Query: 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
           C  +++ + + V+ +M   GL P+ ++YS ++    RK +++    +  +  E GV P+ 
Sbjct: 435 CVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDA 494

Query: 402 VMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVY 447
           V +  +I G+C  RR  +A  L++ +L    G P  E  +T+L            AL ++
Sbjct: 495 VTYSSLIQGLCEMRRLTEACDLSQEMLDM--GLPPDEFTYTTLINAYCVEGDLNKALHLH 552

Query: 448 REAIVAGTIPTVEVVSKVLGCLQ 470
            E I  G +P     S ++  L 
Sbjct: 553 DEMIHKGFLPDAVTYSVLINGLN 575



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 161/404 (39%), Gaps = 63/404 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L R+G + E  ++LE+M  KG    +  Y+      CK     +      ++V N   
Sbjct: 292 NGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVS 351

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P++ T+  L++    +++   A +    ++  GL+ + + YTTLI   ++ G ++  +  
Sbjct: 352 PSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRI 411

Query: 148 -----------------------------------------ENVKPDRVVFNALITACGQ 166
                                                    + + PD V ++ +I+   +
Sbjct: 412 LNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCR 471

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
            G +DRAF +  EM  +   V PD +T  +L++      ++  A ++ + +    +    
Sbjct: 472 KGELDRAFQMKQEMVEK--GVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDE 529

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             YT  IN     GD   A  ++D+M  KG +PD V  S LI+      +   A  +L +
Sbjct: 530 FTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFK 589

Query: 287 AKNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPTV 331
              +      ++Y +L+  CSN +                  +A  ++E M     KP  
Sbjct: 590 LIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGE 649

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           +  N +I   C G  LPK   +  +M   G  P+T+T   L+ A
Sbjct: 650 AVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKA 693



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 171/392 (43%), Gaps = 30/392 (7%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA-GQVD-RAREV 213
           VF+ ++ +      +D+A + +    A+     P  ++  +++ A   + G V   A EV
Sbjct: 144 VFDLMVKSYSHLNMIDQAVNTINL--AKSSGFMPGVLSYNSVLDAIVRSRGSVKLSAEEV 201

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           Y+ + +  +      Y I I      G+ +     + +M + G +P+ V  + LID    
Sbjct: 202 YREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCK 261

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
            G+++ AF +L+   ++G+   +ISY+ ++       + ++A E+ E M      P   T
Sbjct: 262 MGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT 321

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            N L+   C      + + + ++M   G+ P+ +TY+ L+ +  +  ++   +    Q +
Sbjct: 322 YNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMR 381

Query: 394 EDGVIPNLVMFKCIIGMCSRR---YEKARTLNE--------HVLSFNS---GRPQIENKW 439
             G+ PN   +  +I   SR+    E  R LNE         V+++N+   G   +E   
Sbjct: 382 IRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERME 441

Query: 440 TSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRS 495
            +L   V +E +  G  P V   S ++       +L     +++ +VE  GVS DA+  S
Sbjct: 442 EALG--VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEK-GVSPDAVTYS 498

Query: 496 NLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
              SLI G  E      A  L +E    G+ P
Sbjct: 499 ---SLIQGLCEMRRLTEACDLSQEMLDMGLPP 527


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 196/430 (45%), Gaps = 46/430 (10%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRF 83
           +YN LI +    GR S  + +   ME  G L   + Y+     +C     +KA+    + 
Sbjct: 375 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 434

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K+ P PT+ T+N L++   +  +   A ++L L++E G + D   Y  L++  +K GK+
Sbjct: 435 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 494

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           ++           F  ++  CG                     ++P+ ++  AL+   + 
Sbjct: 495 ESA-------SFYFQEMV-ECG---------------------LNPNPVSYTALIDGHSK 525

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G+VD A  + K + +       E Y   IN  S+   +  A  + D M ++G++P+ + 
Sbjct: 526 DGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVIT 585

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHM 322
            + LID     G+ + AF+I  + + +     + +YSSL+ G C   K  +      E M
Sbjct: 586 YTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA-----ERM 640

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
             I  +PT+ T + L++ LC   +  +  +++ DMK  G CP+   Y  LL+A  +  +V
Sbjct: 641 SEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEV 700

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWT 440
           +  L +    +  G   +L +++ +I  +C + + E+A+ L +++L       +I   WT
Sbjct: 701 DHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEI--VWT 758

Query: 441 SLALMVYREA 450
            L   + +E 
Sbjct: 759 VLVDGLLKEG 768



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 177/413 (42%), Gaps = 42/413 (10%)

Query: 6   KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY-- 63
           ++++QF Y   K   Y H+++  +   NRL+R                      D+V+  
Sbjct: 89  ESVIQFFYWISKRPFYKHNMNCFISMLNRLVR----------------------DRVFAP 126

Query: 64  --HARFFNV--CKSQKAIKEAFRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVL 115
             H R   +  C++++ I+    F   +       +L + N L+   A  +  EGA  + 
Sbjct: 127 ADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLY 186

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKV-------DAMFE-NVKPDRVVFNALITACGQS 167
           + +  +G++     + TLI   +K GKV         +F+ ++ PD   + +LI    ++
Sbjct: 187 KQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRN 246

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
             +D AF V   M  E    DP+ +T   L+    N G+VD A ++ + + +  I+ T  
Sbjct: 247 RNLDLAFGVFDRMVKE--GCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVY 304

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            YT+ I         E A  +   M K+G  P+    +ALI      GK+E A  +  + 
Sbjct: 305 TYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKM 364

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
             +G+    ++Y++L+        +  AL+++  M+         T N +I  LC G  +
Sbjct: 365 LKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDI 424

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
            K M +   M  +G  P  +TY+ L+     K +V     LL   KE+G  P+
Sbjct: 425 EKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPD 477



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/402 (23%), Positives = 172/402 (42%), Gaps = 46/402 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L  +GR+ E +D+LE+M  KG+                                 PT+
Sbjct: 276 NGLCNEGRVDEALDMLEEMIEKGI--------------------------------EPTV 303

Query: 93  STFNM-LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA------ 145
            T+ + + ++CA   + E    V R+ ++ G + + + YT LI+  ++ GK++       
Sbjct: 304 YTYTLPITALCAIEHEEEAIELVARM-KKRGCRPNVQTYTALISGLSRLGKLEVAIGLYH 362

Query: 146 --MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
             + E + P+ V +NALI      G    A  +   M  E H    +  T   ++K    
Sbjct: 363 KMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWM--EGHGSLANTQTYNEIIKGLCL 420

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G +++A  +++ + K     T   Y   IN     G+   A  + D M + G  PDE  
Sbjct: 421 GGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWT 480

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + L+      GK+E+A    QE    G++   +SY++L+   S       AL L + M+
Sbjct: 481 YNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRME 540

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
            +   P V + NA+I  L   ++  +  ++   M   GL PN ITY+ L+    R    +
Sbjct: 541 EMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQ 600

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNE 423
               +    ++   +PNL  +  +I G+C   + ++A  ++E
Sbjct: 601 FAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAERMSE 642



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 17/232 (7%)

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS----QTGDWEF- 244
           DHI I  ++KAC N  ++ R  +    I           +  ++  C+    Q   +E  
Sbjct: 128 DHIRI-LMIKACRNEEEIRRVADFLNEISGMG-------FGFSLYSCNTLLIQLAKFEMV 179

Query: 245 --ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
             A ++Y  M   G+ P  +  + LI+     GKV  A  IL +     +S  + +Y+SL
Sbjct: 180 EGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSL 239

Query: 303 -MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
            +G C N +N   A  +++ M      P   T + LI  LC+  ++ + +++L +M   G
Sbjct: 240 ILGHCRN-RNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKG 298

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           + P   TY++ + A    +  E  + L+++ K+ G  PN+  +  +I   SR
Sbjct: 299 IEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSR 350



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/280 (20%), Positives = 120/280 (42%), Gaps = 13/280 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SY  LI    + G++   + LL+ ME  G     + Y+A    + K  +  +      K+
Sbjct: 515 SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKM 574

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V     P + T+  L+     +  ++ AF++   +++     +   Y++LI    + GK 
Sbjct: 575 VEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKA 634

Query: 144 DA---MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           D    M E   +P    ++ L++   + G    A  ++ +M       D + I    L+ 
Sbjct: 635 DEAERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDRE-IYYSLLIA 693

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            C N  +VD A +++  I     +    +Y   I    + G  E A +++D+M +K    
Sbjct: 694 HCKNL-EVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNA 752

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           DE+  + L+D     G+++   ++L   +++  +  I +Y
Sbjct: 753 DEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTY 792



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 69/353 (19%), Positives = 132/353 (37%), Gaps = 56/353 (15%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI     +G ++    LL+ M+  G    +  Y+       K  K    +F F ++
Sbjct: 445 TYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEM 504

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V    NP   ++  L+   +     + A  +L+ ++E G   + + Y  +I   +K  + 
Sbjct: 505 VECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRF 564

Query: 144 -------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                  D M E  + P+ + +  LI    ++G    AF +  +M  E     P+  T  
Sbjct: 565 SEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM--EKRKCLPNLYTYS 622

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+      G+ D A  + ++      + T + Y+  ++   + G +  A  +  DM ++
Sbjct: 623 SLIYGLCQEGKADEAERMSEI----GCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKER 678

Query: 256 GVIPD-EVFLSALI---------------------DFAGH-------------AGKVEAA 280
           G  PD E++ S LI                      F  H             AG+VE A
Sbjct: 679 GFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEA 738

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
             +      +  +   I ++ L+            ++L   M+S    P + T
Sbjct: 739 QALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQT 791


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 172/353 (48%), Gaps = 25/353 (7%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFK----LVPNPTL 92
            G + + +D  +++  +G+L +D+V +    N +CK  ++I +AF+  +     V  P +
Sbjct: 167 NGEVQKAMDFHDNVAAQGML-LDEVCYGTLINGLCKIGRSI-DAFQLLQEMEGQVVKPNI 224

Query: 93  STFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--------V 143
             +NM++ S C      +     L++V + G+  D   YT+LI    ++G+         
Sbjct: 225 VIYNMIIDSFCKDELTCKARDLYLKIV-DMGIDPDILTYTSLIRGFCRTGQWGEVKQLMC 283

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKA 200
           + + +N+ P+   FN LI A  + G +  A   F+++ +   +     PD +T   L+  
Sbjct: 284 EMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQ-----PDIVTFNTLISG 338

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G V  AR+++  + +  I      YTI I    +    + A S++++M  K ++ D
Sbjct: 339 HCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLD 398

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  S+LID    +G++  A+E+     N G    +I+Y+ L+ A    ++    +EL++
Sbjct: 399 IVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFK 458

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            M    L PTV T N LI   C   ++ + M +LS M+S  L P++ITY+ L 
Sbjct: 459 LMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLF 511



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 148/318 (46%), Gaps = 20/318 (6%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGK-VDAM-------FENVKPDRVVFNALITACGQSGA 169
           V   G+  D   Y TLI    K G+ +DA         + VKP+ V++N +I +  +   
Sbjct: 180 VAAQGMLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDEL 239

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
             +A D+  ++      +DPD +T  +L++     GQ    +++  M    N    P VY
Sbjct: 240 TCKARDLYLKIVD--MGIDPDILTYTSLIRGFCRTGQWGEVKQL--MCEMVNKNINPNVY 295

Query: 230 T--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEILQ 285
           T  + I+   + G    A  +++ M K+G  PD V  + LI  +GH   G V  A ++  
Sbjct: 296 TFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLI--SGHCLHGNVLEARKLFD 353

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
               +GI   + SY+ L+      K   +A+ L+  M+   +   +   ++LI  LC   
Sbjct: 354 TVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSG 413

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           ++    E+ S + + G  PN ITY+IL+ A  +  D+++G+ L       G+ P ++ + 
Sbjct: 414 RISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYN 473

Query: 406 CII-GMC-SRRYEKARTL 421
            +I G C S+R  +A  L
Sbjct: 474 ILINGYCKSKRIREAMNL 491



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 131/297 (44%), Gaps = 8/297 (2%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P  + FN +I +  +      A  +L +M      V P   T+   +    + G++  A 
Sbjct: 82  PSVIQFNTIIGSVVKMKHCPVAISLLKQM--VFKGVTPSIFTLSIWINCYCHLGEMGFAF 139

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            V  ++ K   +      T  +      G+ + A   +D++  +G++ DEV    LI+  
Sbjct: 140 SVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGL 199

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G+   AF++LQE + Q +   I+ Y+ ++ +    +   KA +LY  +  + + P +
Sbjct: 200 CKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDI 259

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T  +LI   C   Q  +  +++ +M +  + PN  T+++L+ A  RK  +     + + 
Sbjct: 260 LTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNL 319

Query: 392 AKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 446
             + G  P++V F  +I G C      +AR L + V      R  + + W+   L++
Sbjct: 320 MVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFE----RGILPDVWSYTILII 372


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 191/438 (43%), Gaps = 23/438 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTL 92
           L  +GRI++ +++L++M  KG   +  +YH      C+S    + + R  + +     TL
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRS-GGFRNSVRVLEAMHAKGCTL 179

Query: 93  STFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL---ITTCAKSGKVDAM 146
            T N   +L ++C      E A  +LR +   G +AD   Y  +   +    + G V+ +
Sbjct: 180 DTGNCNLVLNAICEQGCVDE-AVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEEL 238

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            +     +  P+ V FN LI    ++G  +R  +VLA+M+   H   PD      ++   
Sbjct: 239 MDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE--HGCTPDIRMYATIIDGI 296

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G ++ A E+   +  Y +K     Y   +        W+ A  +  +M +K    D+
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L+DF    G V+   E+L++  + G    +I+Y++++          +A+ L + 
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S   KP   +   ++  LC   +     E++S M   G  PN +T++ L+    +K  
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNEHVLSFNSGRPQIENK 438
           VE  + LL Q   +G  P+L+ +  +I   G   +  E    LN  V   N G       
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMV---NKGISPNTII 533

Query: 439 WTSLALMVYREAIVAGTI 456
           ++S+A  + RE  V   I
Sbjct: 534 YSSIACALSREGRVNKVI 551



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 179/412 (43%), Gaps = 19/412 (4%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D +  + ++N LI    R G      ++L  M   G     ++Y      +CK +  ++ 
Sbjct: 246 DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICK-EGHLEV 304

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A      +P+    P +  +N ++    S++  + A ++L  + +     D   +  L+ 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 136 TCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              ++G VD + E ++        PD + +  +I    + G +D A  +L  M++     
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSS--CGC 422

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P+ ++   ++K   +AG+   A E+   + +      P  +   IN   + G  E A  
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +   M   G  PD +  S +ID  G AGK E A E+L    N+GIS   I YSS+  A S
Sbjct: 483 LLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALS 542

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                 K +++++++K   ++      NA+I++LC   +  + ++  + M S G  PN  
Sbjct: 543 REGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNES 602

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
           TY++L+     +   +    LLS+    G +   +M    I  C++   K +
Sbjct: 603 TYTMLIKGLASEGLAKEAQELLSELCSRGALRKHLMRHFGISNCTQENGKQK 654



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 104/456 (22%), Positives = 176/456 (38%), Gaps = 83/456 (18%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAF-RFFKLVPN 89
           N +  QG + E + LL  +   G       Y+A    +C +++   ++E      ++   
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P + TFN L+     +   E   +VL  + E G   D ++Y T+I    K G ++     
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 146 --------------------------------------MFENVKP-DRVVFNALITACGQ 166
                                                 MF+   P D V FN L+    Q
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQ 368

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           +G VDR  ++L +M +  H   PD IT   ++      G +D A  + K +     K   
Sbjct: 369 NGLVDRVIELLEQMLS--HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNT 426

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             YTI +      G W  A  +   M ++G  P+ V  + LI+F    G VE A E+L++
Sbjct: 427 VSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               G S  +ISYS+++     A   ++ALEL                            
Sbjct: 487 MLVNGCSPDLISYSTVIDGLGKAGKTEEALEL---------------------------- 518

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
                  L+ M + G+ PNTI YS +  A  R+  V   + +    K+  +  + V++  
Sbjct: 519 -------LNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNA 571

Query: 407 IIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
           +I    +R+E  R ++      ++G    E+ +T L
Sbjct: 572 VISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTML 607



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 2/238 (0%)

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
           PV P+  T   +++     G++  A EV   +        P +Y + +    ++G +  +
Sbjct: 106 PVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNS 165

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             V + M  KG   D    + +++     G V+ A  +L++    G    I+SY++++  
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKG 225

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
              AK W    EL + M  +   P + T N LI  LC      +  EVL+ M   G  P+
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD 285

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 421
              Y+ ++    ++  +EV   +L++    G+ PN+V +  ++ G+CS  R+++A  L
Sbjct: 286 IRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEEL 343


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 151/320 (47%), Gaps = 14/320 (4%)

Query: 113 QVLRLVQE---AGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALI 161
           +VL+L++E    GLK +   Y  +I    K+GKV        + + E + PD V++  LI
Sbjct: 306 RVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLI 365

Query: 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
               + G V  A+ +  EM      + PD IT  A++      G+V  A +++  +    
Sbjct: 366 DGFCKLGNVSSAYRLFDEMQKR--KISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKR 423

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           ++     YT  I+   + G  + A S+++ M + G+ P+ V  +AL D     G+V+ A 
Sbjct: 424 LEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTAN 483

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           E+L E   +G+ + I +Y+SL+     A N  +A++L + M+     P   T   L+ A 
Sbjct: 484 ELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAY 543

Query: 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
           C   ++ +  E+L  M    L P  +T+++L+        +E G  LL    E G++PN 
Sbjct: 544 CKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNA 603

Query: 402 VMFKCIIGM-CSRRYEKART 420
             +  +I   C R   +A T
Sbjct: 604 TTYNSLIKQYCIRNNMRATT 623



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 160/349 (45%), Gaps = 19/349 (5%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVPNPTL 92
           G +   + L+E+M+ KGL      Y+     +CK+ K + EA R  +      + P+  +
Sbjct: 302 GELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGK-VAEAERVLREMISEGIAPDGVI 360

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMF-- 147
            T  ++   C     S  A+++   +Q+  +  D   YT +I    ++G+V   D +F  
Sbjct: 361 YT-TLIDGFCKLGNVS-SAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHE 418

Query: 148 ---ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
              + ++PD V + ALI    + G +  AF +  +M      + P+ +T  AL       
Sbjct: 419 MVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQ--MGLTPNIVTYTALADGLCKC 476

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G+VD A E+   + +  ++     Y   +N   + G+ + A  +  DM   G  PD V  
Sbjct: 477 GEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTY 536

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + L+D    + ++  A E+L++  ++ +   +++++ LM     +   +   +L + M  
Sbjct: 537 TTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLE 596

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             + P  +T N+LI   C  + +  T E+   M + G+ P+  TY+IL+
Sbjct: 597 KGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILI 645



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 118/259 (45%), Gaps = 9/259 (3%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +N +  +  Q G V  A  +L +M  E+    PD I+   ++      G++ R   V K+
Sbjct: 256 YNIITHSLCQLGRVVEAHQLLLQM--ELRGCIPDVISYSTVINGYCQVGELQR---VLKL 310

Query: 217 IHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           I +  IKG    P  Y   I    +TG    A  V  +M  +G+ PD V  + LID    
Sbjct: 311 IEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCK 370

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
            G V +A+ +  E + + IS   I+Y++++          +A +L+  M   +L+P   T
Sbjct: 371 LGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVT 430

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
             ALI   C   ++ +   + + M  +GL PN +TY+ L     +  +V+    LL +  
Sbjct: 431 YTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMC 490

Query: 394 EDGVIPNLVMFKCII-GMC 411
             G+  N+  +  ++ G+C
Sbjct: 491 RKGLELNIYTYNSLVNGLC 509



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 165/383 (43%), Gaps = 25/383 (6%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           G +S    L ++M+++ +      Y A    +C++ + ++    F ++V     P   T+
Sbjct: 372 GNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTY 431

Query: 96  NMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------ 148
             L+   C   K  E AF +   + + GL  +   YT L     K G+VD   E      
Sbjct: 432 TALIDGYCKEGKMKE-AFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMC 490

Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              ++ +   +N+L+    ++G +D+A  ++ +M  EV    PD +T   LM A   + +
Sbjct: 491 RKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDM--EVAGFHPDAVTYTTLMDAYCKSRE 548

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           + RA E+ + +    ++ T   + + +N    +G  E    +   M +KG++P+    ++
Sbjct: 549 MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNS 608

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LI        + A  EI +    +G+     +Y+ L+     A+N ++A  L+  M    
Sbjct: 609 LIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKG 668

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
              TVS+ NALI       +  +  E+   M+  GL  +   Y+I       +  +E+ L
Sbjct: 669 FNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTL 728

Query: 387 MLLSQAKEDGVIPNLVMFKCIIG 409
            L  +A E          KC++G
Sbjct: 729 ELCDEAIE----------KCLVG 741



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 111/242 (45%), Gaps = 6/242 (2%)

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFAC 246
           DP    I    +    AG +D AR+++  +  Y +  + +   + I+  S+  D  + A 
Sbjct: 181 DPRVFDI--FFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIAL 238

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            V+ +  + GV  +    + +       G+V  A ++L + + +G    +ISYS+++   
Sbjct: 239 KVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGY 298

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
                 Q+ L+L E M+   LKP   T N +I  LC   ++ +   VL +M S G+ P+ 
Sbjct: 299 CQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDG 358

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS--RRYEKARTLNE 423
           + Y+ L+    +  +V     L  + ++  + P+ + +  +I G+C   R  E  +  +E
Sbjct: 359 VIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHE 418

Query: 424 HV 425
            V
Sbjct: 419 MV 420



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 105/247 (42%), Gaps = 17/247 (6%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +++YN L+    + G I + + L++DME  G       Y       CKS++ ++      
Sbjct: 498 IYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLR 557

Query: 85  KLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +++     PT+ TFN+LM+    S   E   ++L+ + E G+  +   Y +LI       
Sbjct: 558 QMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRN 617

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            + A  E         V PD   +N LI    ++  +  A+ +  +M  +   +     +
Sbjct: 618 NMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVS--S 675

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+K      +   ARE+++ + +  +    E+Y I  +     G  E    + D+  
Sbjct: 676 YNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEAI 735

Query: 254 KKGVIPD 260
           +K ++ D
Sbjct: 736 EKCLVGD 742


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 194/485 (40%), Gaps = 77/485 (15%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           P  +TF  LM         E A +V   + E G  A       LI    K G+V+     
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 145 ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               + +  +PD++ +N  +    Q+  V  A  V+  M  E H  DPD  T   ++   
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGH--DPDVFTYNIVVNCL 331

Query: 202 ANAGQVDRAR--------------------------------EVYKMIHKYNIKG-TPEV 228
              GQ++ A+                                E   +  +  +KG +P+V
Sbjct: 332 CKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDV 391

Query: 229 YT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           YT  I IN   + GD   A  ++++M   G  PDEV  + LID     GK+  A ++L++
Sbjct: 392 YTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKD 451

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            ++ G     I+Y++++         ++A E+++ M    +     T N LI  LC   +
Sbjct: 452 MESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 511

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +    E+++ M S GL PN ITY+ +L    ++ D++    +L     +G   ++V +  
Sbjct: 512 IDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGT 571

Query: 407 II-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 465
           +I G+C                  +GR Q+       AL V R   + G  PT +  + V
Sbjct: 572 LINGLCK-----------------AGRTQV-------ALKVLRGMRIKGMRPTPKAYNPV 607

Query: 466 LGCLQLPYNADIRE-----RLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAAS 520
           L  L    N  IR+     R +  +G   DAL    +   +   G     AF  + E   
Sbjct: 608 LQSLFRRNN--IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVD 665

Query: 521 FGIVP 525
            G +P
Sbjct: 666 KGFIP 670



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 146/334 (43%), Gaps = 11/334 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P + TFN LM     +     A  +L  +   G+  D   +TTL+    + G ++A    
Sbjct: 179 PDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 238

Query: 146 ---MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
              M E      +V  N LI    + G V+ A   + +  A+    +PD IT    +   
Sbjct: 239 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIAD--GFEPDQITYNTFVNGL 296

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                V  A +V  ++ +         Y I +NC  + G  E A  + + M  +G +PD 
Sbjct: 297 CQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LI       ++E A ++ ++   +G+S  + +++ L+ A     +   AL L+E 
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK+    P   T N LI  LC   +L K +++L DM+S G   +TITY+ ++    +K  
Sbjct: 417 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
           +E    +  Q    G+  N + F  +I G+C  +
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDK 510



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 2/259 (0%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           ++ D VV+N L+    +   +     V +EM A    + PD +T   LMKA   A QV  
Sbjct: 142 IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGA--RGIKPDVVTFNTLMKALCRAHQVRT 199

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A  + + +    +      +T  +    + G  E A  V   M + G    +V ++ LI+
Sbjct: 200 AVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLIN 259

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G+VE A   +Q+    G     I+Y++ +       +   AL++ + M      P
Sbjct: 260 GYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDP 319

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            V T N ++  LC   QL +   +L+ M   G  P+  T++ L+ A    + +E  L L 
Sbjct: 320 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLA 379

Query: 390 SQAKEDGVIPNLVMFKCII 408
            Q    GV P++  F  +I
Sbjct: 380 RQVTVKGVSPDVYTFNILI 398



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 130/298 (43%), Gaps = 26/298 (8%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  ++++N LI    + G     + L E+M+  G    +  Y+    N+C   K + +A
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK-LGKA 445

Query: 81  FRFFKLV-----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
               K +     P  T+ T+N ++         E A +V   +   G+  +   + TLI 
Sbjct: 446 LDLLKDMESTGCPRSTI-TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 504

Query: 136 TCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K  K+D  F        E ++P+ + +N+++T   + G + +A D+L  M A    V
Sbjct: 505 GLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV 564

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           D   +T G L+     AG+   A +V + +    ++ TP+ Y   +    +  +   A S
Sbjct: 565 DV--VTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALS 622

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAG---HAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           ++ +M + G  PD   L+  I F G     G ++ AF+ + E  ++G      S+  L
Sbjct: 623 LFREMAEVGEPPDA--LTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 678



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 169/396 (42%), Gaps = 28/396 (7%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           ++  P   V+  +I   G  GA+D    ++AEM  E H V      + + + +       
Sbjct: 68  DDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLG--VVHSFLDSYEGQQLF 125

Query: 208 DRAREVY--KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           D A ++   ++   + I+    VY   +N   +    +   SVY +M  +G+ PD V  +
Sbjct: 126 DDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFN 185

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+     A +V  A  +L+E  ++G++    ++++LM       + + AL +   M  +
Sbjct: 186 TLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM 245

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
               T  T+N LI   C   ++   +  +    + G  P+ ITY+  +    + D V   
Sbjct: 246 GCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHA 305

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKAR-TLNEHV--------LSFNSGRPQ 434
           L ++    ++G  P++  +  ++  +C   + E+A+  LN+ V         +FN+    
Sbjct: 306 LKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAA 365

Query: 435 I-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE---NLGVSAD 490
           +        AL + R+  V G  P V   + ++  L    +  +  RL E   N G + D
Sbjct: 366 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD 425

Query: 491 ALKRS----NLCSLIDGFGEYDPRAFSLLEEAASFG 522
            +  +    NLCSL    G+   +A  LL++  S G
Sbjct: 426 EVTYNTLIDNLCSL----GKLG-KALDLLKDMESTG 456


>gi|227202654|dbj|BAH56800.1| AT2G41720 [Arabidopsis thaliana]
          Length = 815

 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 183/396 (46%), Gaps = 21/396 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G   E +++ + M   G+   D V H    +  KS +   +A  +F+L
Sbjct: 215 TYNNLINACGSSGNWREALEVCKKMTDNGV-GPDLVTHNIVLSAYKSGRQYSKALSYFEL 273

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE--AGLKADCKLYTTLITTCAKS 140
           +      P  +TFN+++   +    S  A  +   ++E  A  + D   +T+++   +  
Sbjct: 274 MKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVK 333

Query: 141 GKVD---AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+++   A+FE      +KP+ V +NAL+ A    G    A  VL ++    + + PD +
Sbjct: 334 GEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ--NGIIPDVV 391

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +   L+ +   + Q  +A+EV+ M+ K   K     Y   I+     G    A  ++  M
Sbjct: 392 SYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQM 451

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            + G+ P+ V +  L+     + K      +L  A+++GI++   +Y+S +G+  NA   
Sbjct: 452 EQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAEL 511

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +KA+ LY+ M+  K+K    T   LI+  C   + P+ +  L +M+ L +      YS +
Sbjct: 512 EKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSV 571

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L A  ++  V     + +Q K  G  P+++ +  ++
Sbjct: 572 LCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSML 607



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 156/355 (43%), Gaps = 51/355 (14%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDA 145
           P+ ST+N L++ C SS +   A +V + + + G+  D   +  ++ +  KSG    K  +
Sbjct: 211 PSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTH-NIVLSAYKSGRQYSKALS 269

Query: 146 MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            FE      V+PD   FN +I    + G   +A D+   M  +     PD +T  ++M  
Sbjct: 270 YFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIM-- 327

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                            H Y++KG  E      NC           +V++ M  +G+ P+
Sbjct: 328 -----------------HLYSVKGEIE------NC----------RAVFEAMVAEGLKPN 354

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  +AL+      G    A  +L + K  GI   ++SY+ L+ +   ++   KA E++ 
Sbjct: 355 IVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFL 414

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-K 379
            M+  + KP V T NALI A      L + +E+   M+  G+ PN ++   LL AC R K
Sbjct: 415 MMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSK 474

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 434
             V V   +LS A+  G+  N   +   IG     Y  A  L + +  + S R +
Sbjct: 475 KKVNVD-TVLSAAQSRGINLNTAAYNSAIG----SYINAAELEKAIALYQSMRKK 524



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 164/374 (43%), Gaps = 25/374 (6%)

Query: 81  FRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           F++ K+  N       +NM++ + A     + A  +   +Q+   K D + Y  LI    
Sbjct: 130 FKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHG 189

Query: 139 KSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           ++G+         D +   + P R  +N LI ACG SG    A +V  +M    + V PD
Sbjct: 190 RAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTD--NGVGPD 247

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +T   ++ A  +  Q  +A   ++++    ++     + I I C S+ G    A  +++
Sbjct: 248 LVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFN 307

Query: 251 DMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            M +K     PD V  ++++      G++E    + +    +G+   I+SY++LMGA + 
Sbjct: 308 SMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAV 367

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                 AL +   +K   + P V +   L+ +     Q  K  EV   M+     PN +T
Sbjct: 368 HGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVT 427

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK----------- 417
           Y+ L+ A      +   + +  Q ++DG+ PN+V    ++  CSR  +K           
Sbjct: 428 YNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQ 487

Query: 418 ARTLNEHVLSFNSG 431
           +R +N +  ++NS 
Sbjct: 488 SRGINLNTAAYNSA 501



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 129/297 (43%), Gaps = 38/297 (12%)

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           R  F  LI    + G ++   +V   M  + +    + I    +++  A    VD+AR +
Sbjct: 107 RKNFPVLIRELSRRGCIELCVNVFKWMKIQKNYCARNDI-YNMMIRLHARHNWVDQARGL 165

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           +  + K++ K   E Y   IN   + G W +A ++ DDM +  + P     + LI+  G 
Sbjct: 166 FFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGS 225

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           +G    A E+ ++  + G+   +++++ ++ A  + + + KAL  +E MK  K++P  +T
Sbjct: 226 SGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTT 285

Query: 334 MNALITALCDGDQLPKTMEVLSDMK----------------------------------- 358
            N +I  L    Q  + +++ + M+                                   
Sbjct: 286 FNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEA 345

Query: 359 --SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             + GL PN ++Y+ L+ A          L +L   K++G+IP++V + C++    R
Sbjct: 346 MVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGR 402



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 79/397 (19%), Positives = 161/397 (40%), Gaps = 18/397 (4%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           L+SY R  + G+  E   ++    RK     + V +    +   S   + EA   F+ + 
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKP----NVVTYNALIDAYGSNGFLAEAVEIFRQME 452

Query: 89  N----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P + +   L++ C+ SK       VL   Q  G+  +   Y + I +   + +++
Sbjct: 453 QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELE 512

Query: 145 ---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
              A++++     VK D V F  LI+   +      A   L EM     P+  +     +
Sbjct: 513 KAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKE--VYSS 570

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ A +  GQV  A  ++  +     +     YT  ++  + +  W  AC +  +M   G
Sbjct: 571 VLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELLLEMEANG 630

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD +  SAL+      G+    F ++   + + I      +  +  AC+  + W++A+
Sbjct: 631 IEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAI 690

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +L + M       ++   N ++       ++   M++   + + G+  N  TY+ILL   
Sbjct: 691 DLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHL 750

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
               +    + +L      G+ P+  M++ II    R
Sbjct: 751 LAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGER 787



 Score = 39.7 bits (91), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 105/267 (39%), Gaps = 23/267 (8%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTL 92
           R  +  E I  L++ME   +    +VY +      K Q  + EA   F  +      P +
Sbjct: 542 RMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSK-QGQVTEAESIFNQMKMAGCEPDV 600

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDA 145
             +  ++    +S+    A ++L  ++  G++ D    + L+    K G+       +D 
Sbjct: 601 IAYTSMLHAYNASEKWGKACELLLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDL 660

Query: 146 MFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG---ALMKAC 201
           M E   P    VF  + +AC       RA D++  M+    P  P  ++IG    ++   
Sbjct: 661 MREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMD----PYLPS-LSIGLTNQMLHLF 715

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             +G+V+   +++  I    +    + Y I +      G+W     V + M+  G+ P  
Sbjct: 716 GKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSN 775

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAK 288
                +I F   +  +E  FE L   K
Sbjct: 776 QMYRDIISFGERSAGIE--FEPLIRQK 800


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 194/485 (40%), Gaps = 77/485 (15%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           P  +TF  LM         E A +V   + E G  A       LI    K G+V+     
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 145 ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               + +  +PD++ +N  +    Q+  V  A  V+  M  E H  DPD  T   ++   
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGH--DPDVFTYNIVVNCL 331

Query: 202 ANAGQVDRAR--------------------------------EVYKMIHKYNIKG-TPEV 228
              GQ++ A+                                E   +  +  +KG +P+V
Sbjct: 332 CKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDV 391

Query: 229 YT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           YT  I IN   + GD   A  ++++M   G  PDEV  + LID     GK+  A ++L++
Sbjct: 392 YTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKD 451

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            ++ G     I+Y++++         ++A E+++ M    +     T N LI  LC   +
Sbjct: 452 MESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 511

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +    E+++ M S GL PN ITY+ +L    ++ D++    +L     +G   ++V +  
Sbjct: 512 IDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGT 571

Query: 407 II-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 465
           +I G+C                  +GR Q+       AL V R   + G  PT +  + V
Sbjct: 572 LINGLCK-----------------AGRTQV-------ALKVLRGMRIKGMRPTPKAYNPV 607

Query: 466 LGCLQLPYNADIRE-----RLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAAS 520
           L  L    N  IR+     R +  +G   DAL    +   +   G     AF  + E   
Sbjct: 608 LQSLFRRNN--IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVD 665

Query: 521 FGIVP 525
            G +P
Sbjct: 666 KGFIP 670



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 146/334 (43%), Gaps = 11/334 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P + TFN LM     +     A  +L  +   G+  D   +TTL+    + G ++A    
Sbjct: 179 PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 238

Query: 146 ---MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
              M E      +V  N LI    + G V+ A   + +  A+    +PD IT    +   
Sbjct: 239 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIAD--GFEPDQITYNTFVNGL 296

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                V  A +V  ++ +         Y I +NC  + G  E A  + + M  +G +PD 
Sbjct: 297 CQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LI       ++E A ++ ++   +G+S  + +++ L+ A     +   AL L+E 
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK+    P   T N LI  LC   +L K +++L DM+S G   +TITY+ ++    +K  
Sbjct: 417 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
           +E    +  Q    G+  N + F  +I G+C  +
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDK 510



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 2/259 (0%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           ++ D VV+N L+    +   +     V +EM A    + PD +T   LMKA   A QV  
Sbjct: 142 IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGA--RGIKPDVVTFNTLMKALCRAHQVRT 199

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A  + + +    +      +T  +    + G  E A  V   M + G    +V ++ LI+
Sbjct: 200 AVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLIN 259

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G+VE A   +Q+    G     I+Y++ +       +   AL++ + M      P
Sbjct: 260 GYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDP 319

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            V T N ++  LC   QL +   +L+ M   G  P+  T++ L+ A    + +E  L L 
Sbjct: 320 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLA 379

Query: 390 SQAKEDGVIPNLVMFKCII 408
            Q    GV P++  F  +I
Sbjct: 380 RQVTVKGVSPDVYTFNILI 398



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 130/298 (43%), Gaps = 26/298 (8%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  ++++N LI    + G     + L E+M+  G    +  Y+    N+C   K + +A
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK-LGKA 445

Query: 81  FRFFKLV-----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
               K +     P  T+ T+N ++         E A +V   +   G+  +   + TLI 
Sbjct: 446 LDLLKDMESTGCPRSTI-TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 504

Query: 136 TCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K  K+D  F        E ++P+ + +N+++T   + G + +A D+L  M A    V
Sbjct: 505 GLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV 564

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           D   +T G L+     AG+   A +V + +    ++ TP+ Y   +    +  +   A S
Sbjct: 565 DV--VTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALS 622

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAG---HAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           ++ +M + G  PD   L+  I F G     G ++ AF+ + E  ++G      S+  L
Sbjct: 623 LFREMAEVGEPPDA--LTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 678



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 169/396 (42%), Gaps = 28/396 (7%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           ++  P   V+  +I   G  GA+D    ++AEM  E H V      + + + +       
Sbjct: 68  DDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLG--VVHSFLDSYEGQQLF 125

Query: 208 DRAREVY--KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           D A ++   ++   + I+    VY   +N   +    +   SVY +M  +G+ PD V  +
Sbjct: 126 DDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFN 185

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+     A +V  A  +L+E  ++G++    ++++LM       + + AL +   M  +
Sbjct: 186 TLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM 245

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
               T  T+N LI   C   ++   +  +    + G  P+ ITY+  +    + D V   
Sbjct: 246 GCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHA 305

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKAR-TLNEHV--------LSFNSGRPQ 434
           L ++    ++G  P++  +  ++  +C   + E+A+  LN+ V         +FN+    
Sbjct: 306 LKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAA 365

Query: 435 I-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE---NLGVSAD 490
           +        AL + R+  V G  P V   + ++  L    +  +  RL E   N G + D
Sbjct: 366 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD 425

Query: 491 ALKRS----NLCSLIDGFGEYDPRAFSLLEEAASFG 522
            +  +    NLCSL    G+   +A  LL++  S G
Sbjct: 426 EVTYNTLIDNLCSL----GKLG-KALDLLKDMESTG 456


>gi|297832060|ref|XP_002883912.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329752|gb|EFH60171.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 171/393 (43%), Gaps = 12/393 (3%)

Query: 30  HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89
           H  + L R  RI        DM R  +      ++     +CK  K +K+A  F  ++ +
Sbjct: 196 HILSLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGK-LKKAKGFLGIMES 254

Query: 90  ----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               PT+ T+N L+   +     EGA  ++  ++  G + D + Y  +++     G+   
Sbjct: 255 FGIKPTIVTYNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRASE 314

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +   +K     PD V +N LI  C  +G ++ AF    EM  +   + P   T   L+  
Sbjct: 315 VLREMKGIGLVPDSVSYNILIRGCSNNGDLETAFAYRDEMVKQ--GMVPTFYTYNTLIHG 372

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                +++ A  + + I +  I      Y I IN   Q GD + A +++D+M   G+ P 
Sbjct: 373 LFMENKIEAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTDGIKPT 432

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           +   ++LI       K   A E+ ++   +G+   ++  ++LM       N  +A  L +
Sbjct: 433 QFTYTSLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLK 492

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M  + + P   T N L+  LC   +  +  E++ +MK  G+ P+ I+Y+ L+    +K 
Sbjct: 493 EMDRMNIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKG 552

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           D +   ++  +    G  P L+ +  ++   S+
Sbjct: 553 DTKHAFIVRDEMLSLGFNPTLLTYNALLKGLSK 585



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 167/366 (45%), Gaps = 20/366 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN L++    +GRI     ++ +M+ KG     + Y+     +C   +A  E  R  K 
Sbjct: 263 TYNTLVQGYSLRGRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEGRA-SEVLREMKG 321

Query: 86  --LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             LVP+    ++N+L+  C+++ D E AF     + + G+      Y TLI       K+
Sbjct: 322 IGLVPDSV--SYNILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKI 379

Query: 144 DA---MFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +A   +   ++      D V +N +I    Q G   +AF +  EM  +   + P   T  
Sbjct: 380 EAAEILIREIREKGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMTD--GIKPTQFTYT 437

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+       +   A E+++ +    +K    +    ++    TG+ + A S+  +M + 
Sbjct: 438 SLIYVLCRRNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCATGNMDRAFSLLKEMDRM 497

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + PD+V  + L+      GK E A E++ E K +GI    ISY++L+   S   + + A
Sbjct: 498 NIDPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHA 557

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             + + M S+   PT+ T NAL+  L          E+L +MKS G+ PN  ++  ++ A
Sbjct: 558 FIVRDEMLSLGFNPTLLTYNALLKGLSKNQDGELAEELLREMKSEGIVPNDSSFCSVIEA 617

Query: 376 CERKDD 381
             + D+
Sbjct: 618 MSKSDN 623



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 156/376 (41%), Gaps = 36/376 (9%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           ++F+ ++    Q   VD A +    M  +    DP   T   ++   +   +++ A   Y
Sbjct: 157 ILFDFMVRFYCQLRMVDEAIECFYLMKEK--GFDPKTETCNHILSLLSRLNRIENAWVFY 214

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             +++  IK     + I IN   + G  + A      M   G+ P  V  + L+      
Sbjct: 215 ADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMESFGIKPTIVTYNTLVQGYSLR 274

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G++E A  I+ E K++G    + +Y+ ++    N     +A E+   MK I L P   + 
Sbjct: 275 GRIEGARMIISEMKSKGFQPDLQTYNPILSWMCNEG---RASEVLREMKGIGLVPDSVSY 331

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N LI    +   L        +M   G+ P   TY+ L+     ++ +E   +L+ + +E
Sbjct: 332 NILIRGCSNNGDLETAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIRE 391

Query: 395 DGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 452
            G++ + V +  +I G C     +KA  L++ +++   G    +  +TSL  ++ R    
Sbjct: 392 KGIVLDSVTYNIVINGYCQHGDAKKAFALHDEMMT--DGIKPTQFTYTSLIYVLCRR--- 446

Query: 453 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDP 509
             T    E+  KV+G                  G+  D +    + +L+DG    G  D 
Sbjct: 447 NKTREADELFEKVVG-----------------KGMKPDLVM---MNTLMDGHCATGNMD- 485

Query: 510 RAFSLLEEAASFGIVP 525
           RAFSLL+E     I P
Sbjct: 486 RAFSLLKEMDRMNIDP 501


>gi|168038568|ref|XP_001771772.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676903|gb|EDQ63380.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 614

 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 173/371 (46%), Gaps = 30/371 (8%)

Query: 33  NRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           NR I R   +SE ++++ +M+  G+   ++  +     VC+ Q+    A   ++ + +  
Sbjct: 155 NRSISRCSSLSEALEVVNEMKAAGVNAANEGTYLALITVCRRQQEGDRALSIYEAMKDAG 214

Query: 90  --PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG------ 141
             P++ T+N L+S C  +K  E A+++   ++ +G+K D   YT L+    K+G      
Sbjct: 215 VIPSVLTYNTLISCCQQAKRLEDAYRIKAEMEASGVKPDVVTYTALMALVVKTGPYRGRS 274

Query: 142 -------KVDAMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
                  K   +++     N++PD + +N L+ A  Q+   ++  ++   M A   P  P
Sbjct: 275 SPAQRLEKALQLYQEMQDRNIRPDSITYNTLMFAGAQAKVPEKVLEIYRTMVAAGVP--P 332

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT--GDWEFACS 247
           D  T   ++++ A  G++  A EV++ +    +      +   I  C+     D E A +
Sbjct: 333 DQFTFSFILESAAAGGRLKVALEVFEEMRAAGVAPKTNTFNFLIEACASAPYPDAEKAWA 392

Query: 248 VYDDM-TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMG 304
           ++++M T +GV+P+    + LI  +   G    A +  +   N G   +V   +++ L+ 
Sbjct: 393 LFEEMKTIEGVVPNAQTYNHLITASCKGGDNARALKAYELMWNSGYQRAVTTATFNKLIQ 452

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
           + S  +  + AL++Y  M     KP   T + L+ A    D L + + +  +M+ LG+ P
Sbjct: 453 SASQTEGLESALKMYRKMLDAGYKPDAITYSTLVVACNRADDLEQALSISQEMEGLGVKP 512

Query: 365 NTITYSILLVA 375
           N +    L+ A
Sbjct: 513 NQVVQHSLIAA 523



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 179/397 (45%), Gaps = 44/397 (11%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANAGQVDRAREVYK 215
            N  I+ C    ++  A +V+ EM A  V+  +    T  AL+  C    + DRA  +Y+
Sbjct: 154 INRSISRCS---SLSEALEVVNEMKAAGVNAANEG--TYLALITVCRRQQEGDRALSIYE 208

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            +    +  +   Y   I+CC Q    E A  +  +M   GV PD V  +AL+      G
Sbjct: 209 AMKDAGVIPSVLTYNTLISCCQQAKRLEDAYRIKAEMEASGVKPDVVTYTALMALVVKTG 268

Query: 276 ----------KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
                     ++E A ++ QE +++ I    I+Y++LM A + AK  +K LE+Y  M + 
Sbjct: 269 PYRGRSSPAQRLEKALQLYQEMQDRNIRPDSITYNTLMFAGAQAKVPEKVLEIYRTMVAA 328

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK--DDVE 383
            + P   T + ++ +   G +L   +EV  +M++ G+ P T T++ L+ AC      D E
Sbjct: 329 GVPPDQFTFSFILESAAAGGRLKVALEVFEEMRAAGVAPKTNTFNFLIEACASAPYPDAE 388

Query: 384 VGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG----------- 431
               L  + K  +GV+PN   +  +I    +  + AR L  + L +NSG           
Sbjct: 389 KAWALFEEMKTIEGVVPNAQTYNHLITASCKGGDNARALKAYELMWNSGYQRAVTTATFN 448

Query: 432 ---RPQIENKWTSLALMVYREAIVAGTIP-TVEVVSKVLGCLQLPYNADIRERL-----V 482
              +   + +    AL +YR+ + AG  P  +   + V+ C +     D+ + L     +
Sbjct: 449 KLIQSASQTEGLESALKMYRKMLDAGYKPDAITYSTLVVACNRAD---DLEQALSISQEM 505

Query: 483 ENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEE 517
           E LGV  + + + +L +     G+++     F +L+E
Sbjct: 506 EGLGVKPNQVVQHSLIAAYGQAGQWEDAVATFRVLQE 542



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 126/285 (44%), Gaps = 22/285 (7%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ--KAIKEAFRFFKL--VPNPTLSTF 95
           R+ + + L ++M+ + +      Y+   F   +++  + + E +R      VP P   TF
Sbjct: 279 RLEKALQLYQEMQDRNIRPDSITYNTLMFAGAQAKVPEKVLEIYRTMVAAGVP-PDQFTF 337

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-----MFENV 150
           + ++   A+    + A +V   ++ AG+      +  LI  CA +   DA     +FE +
Sbjct: 338 SFILESAAAGGRLKVALEVFEEMRAAGVAPKTNTFNFLIEACASAPYPDAEKAWALFEEM 397

Query: 151 K------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           K      P+   +N LITA  + G   RA      M    +       T   L+++ +  
Sbjct: 398 KTIEGVVPNAQTYNHLITASCKGGDNARALKAYELMWNSGYQRAVTTATFNKLIQSASQT 457

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
             ++ A ++Y+ +     K     Y+  +  C++  D E A S+  +M   GV P++V  
Sbjct: 458 EGLESALKMYRKMLDAGYKPDAITYSTLVVACNRADDLEQALSISQEMEGLGVKPNQVVQ 517

Query: 265 SALIDFAGHAGKVE---AAFEILQEAKNQGISVGIISYSSLMGAC 306
            +LI   G AG+ E   A F +LQE + Q  SV   SYS +  AC
Sbjct: 518 HSLIAAYGQAGQWEDAVATFRVLQEGEEQLTSV---SYSIIFDAC 559



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/223 (19%), Positives = 97/223 (43%), Gaps = 22/223 (9%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYH--------ARFFNVCKSQKAIKEAFRFFKLVPNP 90
           GR+   +++ E+M   G+      ++        A + +  K+    +E      +VPN 
Sbjct: 348 GRLKVALEVFEEMRAAGVAPKTNTFNFLIEACASAPYPDAEKAWALFEEMKTIEGVVPNA 407

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK--ADCKLYTTLITTCAKSGKVDAMFE 148
              T+N L++      D+  A +   L+  +G +       +  LI + +++  +++  +
Sbjct: 408 --QTYNHLITASCKGGDNARALKAYELMWNSGYQRAVTTATFNKLIQSASQTEGLESALK 465

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                     KPD + ++ L+ AC ++  +++A  +  EM  E   V P+ +   +L+ A
Sbjct: 466 MYRKMLDAGYKPDAITYSTLVVACNRADDLEQALSISQEM--EGLGVKPNQVVQHSLIAA 523

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
              AGQ + A   ++++ +   + T   Y+I  + C   G  E
Sbjct: 524 YGQAGQWEDAVATFRVLQEGEEQLTSVSYSIIFDACFGKGGAE 566


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 177/406 (43%), Gaps = 33/406 (8%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SY  LI      GRI+E + L  DM         + Y    + +  S + + EA   F  
Sbjct: 266 SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKV-EALNLFNE 324

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +      P + T+ +L+  +C  +K  E A ++L  + E GL      Y  LI    K G
Sbjct: 325 MKEKGCEPNVHTYTVLIDGLCKENKMDE-ARKMLSEMSEKGLIPSVVTYNALIDGYCKEG 383

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            +D  FE        +  P+   +N LI    +   V +A  +L +M      + P  IT
Sbjct: 384 MIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLER--KLSPSLIT 441

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +L+        ++ A  +  ++++  +      Y++ I+   + G  E A +++D + 
Sbjct: 442 YNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVK 501

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            KGV  +EV  +ALID     GK++ A+ +L+   N        +Y+ L+      K  +
Sbjct: 502 AKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMK 561

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A  L   M ++ +KPTV T   LI  +         ++V + M SLG  P+  TY+  L
Sbjct: 562 EASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFL 621

Query: 374 VA------CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            A       E  DDV      +++  E+G++P+LV +  +I   +R
Sbjct: 622 HAYFSQGMLEEVDDV------IAKMNEEGILPDLVTYTVLIDGYAR 661



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 197/443 (44%), Gaps = 32/443 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    ++G I +  ++L+ ME        + Y+     +CK +K  K      K+
Sbjct: 371 TYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKM 430

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +    +P+L T+N L+       D E A+++L L+ E GL  D   Y+  I T  K G+V
Sbjct: 431 LERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRV 490

Query: 144 D---AMFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +    +F++VK      + V++ ALI    + G +D A+ +L  M  +     P+  T  
Sbjct: 491 EEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDA--CLPNSYTYN 548

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            L++      ++  A  +   +    +K T   YTI I    + G ++ A  V++ M   
Sbjct: 549 VLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSL 608

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  PD    +A +      G +E   +++ +   +GI   +++Y+ L+   +      +A
Sbjct: 609 GYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRA 668

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            +  + M     KP++  ++ LI  L   +++ +T         +G+   +   S+ +  
Sbjct: 669 FDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKET------RSEIGIDSVSNVNSVDIAD 722

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRP 433
             +  + E+ L L  +  E G   ++ ++  +I G C + R E+A+ L  H+     G  
Sbjct: 723 VWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKE--RGMS 780

Query: 434 QIENKWTSL-----ALMVYREAI 451
             E+ + SL      L VY EA+
Sbjct: 781 PSEDIYNSLLDCCCKLGVYAEAV 803



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 135/278 (48%), Gaps = 4/278 (1%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           + PD   + +LI    ++  VD A++V   M  +      + ++   L+     AG+++ 
Sbjct: 225 LHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQK--GCQRNEVSYTNLIHGLCEAGRINE 282

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A +++  + + N   T   YT+ I   S +G    A +++++M +KG  P+    + LID
Sbjct: 283 ALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLID 342

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                 K++ A ++L E   +G+   +++Y++L+           A E+ + M+S    P
Sbjct: 343 GLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGP 402

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
              T N LI  LC   ++ K M +L+ M    L P+ ITY+ L+    + +D+E    LL
Sbjct: 403 NTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLL 462

Query: 390 SQAKEDGVIPNLVMFKCIIG-MCSR-RYEKARTLNEHV 425
           S   E+G++P+   +   I  +C   R E+A TL + V
Sbjct: 463 SLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSV 500



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 146/361 (40%), Gaps = 49/361 (13%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           ++A     CK    ++      K+V    +P   T+  L+     +K  + A++V  ++ 
Sbjct: 197 FNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMP 256

Query: 120 EAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVD 171
           + G + +   YT LI    ++G++        D   +N  P    +  LI A   SG   
Sbjct: 257 QKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKV 316

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
            A ++  EM  +    +P+  T   L+       ++D AR   KM+              
Sbjct: 317 EALNLFNEMKEK--GCEPNVHTYTVLIDGLCKENKMDEAR---KML-------------- 357

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
                              +M++KG+IP  V  +ALID     G ++ AFEIL   ++  
Sbjct: 358 ------------------SEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNS 399

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
                 +Y+ L+      +   KA+ L   M   KL P++ T N+LI   C  + L    
Sbjct: 400 CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAY 459

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
            +LS M   GL P+  TYS+ +    ++  VE    L    K  GV  N V++  +I G 
Sbjct: 460 RLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGY 519

Query: 411 C 411
           C
Sbjct: 520 C 520



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 159/393 (40%), Gaps = 46/393 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           + L ++GR+ E   L + ++ KG+   + +Y A     CK  K I  A+   + + N   
Sbjct: 482 DTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGK-IDVAYSLLERMLNDAC 540

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P   T+N+L+  +C   K  E +  V +++   G+K     YT LI    K G  D   
Sbjct: 541 LPNSYTYNVLIEGLCKEKKMKEASSLVAKMLT-MGVKPTVVTYTILIGEMLKDGAFDHAL 599

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +          +PD   + A + A    G ++   DV+A+MN E   + PD +T   L+ 
Sbjct: 600 KVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEE--GILPDLVTYTVLID 657

Query: 200 ACANAGQVDRAREVYKMI--------------------HKYNIKGT---------PEVYT 230
             A  G   RA +  K +                    H+  +K T           V +
Sbjct: 658 GYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNS 717

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
           + I    +T ++E A  +++ M + G   D     ALI       ++E A  ++   K +
Sbjct: 718 VDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKER 777

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G+S     Y+SL+  C     + +A+ L + M    L P + +   L+  L       K 
Sbjct: 778 GMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKA 837

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
             V   + S G   + + + +L+    ++D V+
Sbjct: 838 KAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVD 870



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 7/232 (3%)

Query: 196 ALMKACANAGQVDRAREVYKMIH---KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +++K+C +   V    EV++ ++   ++  K T   Y   +   S+    +   +VY ++
Sbjct: 126 SMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLEL 185

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL-MGACSNAKN 311
               + P+    +A+++     G V  A     +    G+     +Y+SL +G C N K 
Sbjct: 186 LNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRN-KG 244

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
              A E++  M     +    +   LI  LC+  ++ + +++ +DM     CP   TY++
Sbjct: 245 VDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTV 304

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTL 421
           L+ A          L L ++ KE G  PN+  +  +I G+C   + ++AR +
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKM 356


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 147/314 (46%), Gaps = 18/314 (5%)

Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP--------DRVV 156
           SK  E  FQ L      G   D +    L+    ++GK+D  F   K         DRV 
Sbjct: 500 SKALELWFQFL----NKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVS 555

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +N LI+ C     +D AF  L EM      + PD+ T   L+    N  +V+ A + +  
Sbjct: 556 YNTLISGCCGKKKLDEAFMFLDEMVK--RGLKPDNYTYSILICGLFNMNKVEEAIQFWDD 613

Query: 217 IHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             +  +   P+VYT  + I+ C +    E     +D+M  K V P+ V  + LI     +
Sbjct: 614 CKRNGM--LPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRS 671

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G++  A E+ ++ K++GIS    +Y+SL+   S     ++A  L+E M+   L+P V   
Sbjct: 672 GRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHY 731

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            ALI       Q+ K   +L +M S  + PN ITY++++    R  +V     LL++ +E
Sbjct: 732 TALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMRE 791

Query: 395 DGVIPNLVMFKCII 408
            G++P+ + +K  I
Sbjct: 792 KGIVPDSITYKEFI 805



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 163/385 (42%), Gaps = 13/385 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFKLVPNPT 91
           L R  RI +   +L++M +KG      VY+     F       KAI+          + T
Sbjct: 353 LTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLT 412

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA------ 145
            ST+N L+     +  ++ A ++L+ +   G   +   +T++I         D+      
Sbjct: 413 SSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVG 472

Query: 146 --MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
             +  N+ P   +   LI+   + G   +A ++  +   +   VD    T  AL+     
Sbjct: 473 EMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTR--TSNALLHGLCE 530

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           AG++D A  + K I           Y   I+ C      + A    D+M K+G+ PD   
Sbjct: 531 AGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYT 590

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            S LI    +  KVE A +   + K  G+   + +YS ++  C  A+  ++  E ++ M 
Sbjct: 591 YSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMM 650

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           S  ++P     N LI A C   +L   +E+  DMK  G+ PN+ TY+ L+        VE
Sbjct: 651 SKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVE 710

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
              +L  + + +G+ PN+  +  +I
Sbjct: 711 EAKLLFEEMRMEGLEPNVFHYTALI 735



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 98/496 (19%), Positives = 198/496 (39%), Gaps = 28/496 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L+R     +C +   D+  KG+     ++       CK  K ++EA + F  +      P
Sbjct: 249 LVRANEFQKCCEAF-DVVCKGVSPDVYLFTTAINAFCKGGK-VEEAVKLFSKMEEAGVAP 306

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMF-- 147
            + TFN ++         + AF     + E G++     Y+ L+    ++ ++ DA F  
Sbjct: 307 NVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVL 366

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                +   P+ +V+N LI +  ++G++++A ++   M ++   +     T   L+K   
Sbjct: 367 KEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS--TYNTLIKGYC 424

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             GQ D A  + K +           +T  I        ++ A     +M  + + P   
Sbjct: 425 KNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGG 484

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
            L+ LI      GK   A E+  +  N+G  V   + ++L+     A    +A  + + +
Sbjct: 485 LLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEI 544

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
                     + N LI+  C   +L +    L +M   GL P+  TYSIL+      + V
Sbjct: 545 LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKV 604

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG--------- 431
           E  +      K +G++P++  +  +I  C +  R E+ +   + ++S N           
Sbjct: 605 EEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHL 664

Query: 432 -RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSAD 490
            R    +   S+AL +  +    G  P     + ++  + +    +  + L E + +   
Sbjct: 665 IRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGL 724

Query: 491 ALKRSNLCSLIDGFGE 506
                +  +LIDG+G+
Sbjct: 725 EPNVFHYTALIDGYGK 740



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 137/316 (43%), Gaps = 15/316 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L + G+ S+ ++L      KG +   +  +A    +C++ K + EAFR  K +       
Sbjct: 493 LCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGK-LDEAFRIQKEILGRGCVM 551

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
              ++N L+S C   K  + AF  L  + + GLK D   Y+ LI       KV+   +  
Sbjct: 552 DRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFW 611

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  + PD   ++ +I  C ++   +   +   EM ++   V P+ +    L++A  
Sbjct: 612 DDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSK--NVQPNTVVYNHLIRAYC 669

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            +G++  A E+ + +    I      YT  I   S     E A  ++++M  +G+ P+  
Sbjct: 670 RSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVF 729

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +ALID  G  G++     +L+E  ++ +    I+Y+ ++G  +   N  +A  L   M
Sbjct: 730 HYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEM 789

Query: 323 KSIKLKPTVSTMNALI 338
           +   + P   T    I
Sbjct: 790 REKGIVPDSITYKEFI 805



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 155/383 (40%), Gaps = 22/383 (5%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFN 96
           +S C D  E++ RK    + +VY  +F      +     A   F ++ N    P+ +T N
Sbjct: 191 LSLCFD--EEIRRKMSDLLIEVYCTQF-----KRDGCYLALDVFPVLANKGMFPSKTTCN 243

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------- 148
           +L++    + + +   +   +V + G+  D  L+TT I    K GKV+   +        
Sbjct: 244 ILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEA 302

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            V P+ V FN +I   G  G  D AF +  E   E   ++P  IT   L+K    A ++ 
Sbjct: 303 GVAPNVVTFNTVIDGLGMCGRYDEAF-MFKEKMVE-RGMEPTLITYSILVKGLTRAKRIG 360

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A  V K + K        VY   I+   + G    A  + D M  KG+       + LI
Sbjct: 361 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 420

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                 G+ + A  +L+E  + G +V   S++S++    +   +  AL     M    + 
Sbjct: 421 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 480

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P    +  LI+ LC   +  K +E+     + G   +T T + LL        ++    +
Sbjct: 481 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 540

Query: 389 LSQAKEDGVIPNLVMFKCIIGMC 411
             +    G + + V +  +I  C
Sbjct: 541 QKEILGRGCVMDRVSYNTLISGC 563



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 121/293 (41%), Gaps = 46/293 (15%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L   G++ E   + +++  +G + MD+V +    + C  +K + EAF F     K    P
Sbjct: 528 LCEAGKLDEAFRIQKEILGRGCV-MDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKP 586

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----- 145
              T+++L+    +    E A Q     +  G+  D   Y+ +I  C K+ + +      
Sbjct: 587 DNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFF 646

Query: 146 ---MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHP--------------- 186
              M +NV+P+ VV+N LI A  +SG +  A ++  +M  + + P               
Sbjct: 647 DEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSII 706

Query: 187 -----------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
                            ++P+     AL+      GQ+ +   + + +H  N+      Y
Sbjct: 707 SRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITY 766

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           T+ I   ++ G+   A  + ++M +KG++PD +     I      G V  AF+
Sbjct: 767 TVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 819


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 147/314 (46%), Gaps = 18/314 (5%)

Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP--------DRVV 156
           SK  E  FQ L      G   D +    L+    ++GK+D  F   K         DRV 
Sbjct: 487 SKALELWFQFL----NKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVS 542

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +N LI+ C     +D AF  L EM      + PD+ T   L+    N  +V+ A + +  
Sbjct: 543 YNTLISGCCGKKKLDEAFMFLDEMVK--RGLKPDNYTYSILICGLFNMNKVEEAIQFWDD 600

Query: 217 IHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             +  +   P+VYT  + I+ C +    E     +D+M  K V P+ V  + LI     +
Sbjct: 601 CKRNGM--LPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRS 658

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G++  A E+ ++ K++GIS    +Y+SL+   S     ++A  L+E M+   L+P V   
Sbjct: 659 GRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHY 718

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            ALI       Q+ K   +L +M S  + PN ITY++++    R  +V     LL++ +E
Sbjct: 719 TALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMRE 778

Query: 395 DGVIPNLVMFKCII 408
            G++P+ + +K  I
Sbjct: 779 KGIVPDSITYKEFI 792



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 163/385 (42%), Gaps = 13/385 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFKLVPNPT 91
           L R  RI +   +L++M +KG      VY+     F       KAI+          + T
Sbjct: 340 LTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLT 399

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA------ 145
            ST+N L+     +  ++ A ++L+ +   G   +   +T++I         D+      
Sbjct: 400 SSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVG 459

Query: 146 --MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
             +  N+ P   +   LI+   + G   +A ++  +   +   VD    T  AL+     
Sbjct: 460 EMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTR--TSNALLHGLCE 517

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           AG++D A  + K I           Y   I+ C      + A    D+M K+G+ PD   
Sbjct: 518 AGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYT 577

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            S LI    +  KVE A +   + K  G+   + +YS ++  C  A+  ++  E ++ M 
Sbjct: 578 YSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMM 637

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           S  ++P     N LI A C   +L   +E+  DMK  G+ PN+ TY+ L+        VE
Sbjct: 638 SKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVE 697

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
              +L  + + +G+ PN+  +  +I
Sbjct: 698 EAKLLFEEMRMEGLEPNVFHYTALI 722



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 98/496 (19%), Positives = 198/496 (39%), Gaps = 28/496 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L+R     +C +   D+  KG+     ++       CK  K ++EA + F  +      P
Sbjct: 236 LVRANEFQKCCEAF-DVVCKGVSPDVYLFTTAINAFCKGGK-VEEAVKLFSKMEEAGVAP 293

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMF-- 147
            + TFN ++         + AF     + E G++     Y+ L+    ++ ++ DA F  
Sbjct: 294 NVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVL 353

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                +   P+ +V+N LI +  ++G++++A ++   M ++   +     T   L+K   
Sbjct: 354 KEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS--TYNTLIKGYC 411

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             GQ D A  + K +           +T  I        ++ A     +M  + + P   
Sbjct: 412 KNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGG 471

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
            L+ LI      GK   A E+  +  N+G  V   + ++L+     A    +A  + + +
Sbjct: 472 LLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEI 531

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
                     + N LI+  C   +L +    L +M   GL P+  TYSIL+      + V
Sbjct: 532 LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKV 591

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG--------- 431
           E  +      K +G++P++  +  +I  C +  R E+ +   + ++S N           
Sbjct: 592 EEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHL 651

Query: 432 -RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSAD 490
            R    +   S+AL +  +    G  P     + ++  + +    +  + L E + +   
Sbjct: 652 IRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGL 711

Query: 491 ALKRSNLCSLIDGFGE 506
                +  +LIDG+G+
Sbjct: 712 EPNVFHYTALIDGYGK 727



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 137/316 (43%), Gaps = 15/316 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L + G+ S+ ++L      KG +   +  +A    +C++ K + EAFR  K +       
Sbjct: 480 LCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGK-LDEAFRIQKEILGRGCVM 538

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
              ++N L+S C   K  + AF  L  + + GLK D   Y+ LI       KV+   +  
Sbjct: 539 DRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFW 598

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  + PD   ++ +I  C ++   +   +   EM ++   V P+ +    L++A  
Sbjct: 599 DDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSK--NVQPNTVVYNHLIRAYC 656

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            +G++  A E+ + +    I      YT  I   S     E A  ++++M  +G+ P+  
Sbjct: 657 RSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVF 716

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +ALID  G  G++     +L+E  ++ +    I+Y+ ++G  +   N  +A  L   M
Sbjct: 717 HYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEM 776

Query: 323 KSIKLKPTVSTMNALI 338
           +   + P   T    I
Sbjct: 777 REKGIVPDSITYKEFI 792



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 155/383 (40%), Gaps = 22/383 (5%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFN 96
           +S C D  E++ RK    + +VY  +F      +     A   F ++ N    P+ +T N
Sbjct: 178 LSLCFD--EEIRRKMSDLLIEVYCTQF-----KRDGCYLALDVFPVLANKGMFPSKTTCN 230

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------- 148
           +L++    + + +   +   +V + G+  D  L+TT I    K GKV+   +        
Sbjct: 231 ILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEA 289

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            V P+ V FN +I   G  G  D AF +  E   E   ++P  IT   L+K    A ++ 
Sbjct: 290 GVAPNVVTFNTVIDGLGMCGRYDEAF-MFKEKMVE-RGMEPTLITYSILVKGLTRAKRIG 347

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A  V K + K        VY   I+   + G    A  + D M  KG+       + LI
Sbjct: 348 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 407

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                 G+ + A  +L+E  + G +V   S++S++    +   +  AL     M    + 
Sbjct: 408 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 467

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P    +  LI+ LC   +  K +E+     + G   +T T + LL        ++    +
Sbjct: 468 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 527

Query: 389 LSQAKEDGVIPNLVMFKCIIGMC 411
             +    G + + V +  +I  C
Sbjct: 528 QKEILGRGCVMDRVSYNTLISGC 550



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 121/293 (41%), Gaps = 46/293 (15%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L   G++ E   + +++  +G + MD+V +    + C  +K + EAF F     K    P
Sbjct: 515 LCEAGKLDEAFRIQKEILGRGCV-MDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKP 573

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----- 145
              T+++L+    +    E A Q     +  G+  D   Y+ +I  C K+ + +      
Sbjct: 574 DNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFF 633

Query: 146 ---MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHP--------------- 186
              M +NV+P+ VV+N LI A  +SG +  A ++  +M  + + P               
Sbjct: 634 DEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSII 693

Query: 187 -----------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
                            ++P+     AL+      GQ+ +   + + +H  N+      Y
Sbjct: 694 SRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITY 753

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           T+ I   ++ G+   A  + ++M +KG++PD +     I      G V  AF+
Sbjct: 754 TVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 806


>gi|356551785|ref|XP_003544254.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g09900-like [Glycine max]
          Length = 603

 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 187/434 (43%), Gaps = 30/434 (6%)

Query: 1   MQDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKG-LLDM 59
           +  G  N ++    NG + +   + SE +H  + LI+ G + E    LE M  KG ++  
Sbjct: 90  LPKGALNGVESSSANGVNTSLNFEESE-IHHLHVLIKNGELDEASRFLEYMTNKGNIMPC 148

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFFKL------VPNPTLSTF-------NMLMSVCASSK 106
                A     CK  +  K A R   +      V + T+  F       N+L+     S 
Sbjct: 149 VIACTALISEFCKIGRT-KNATRIMGILEESGAVIDITIYNFFCLPKKNNVLIGGYCXSG 207

Query: 107 DSEGAFQVLRL--VQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK----PDRVVFNAL 160
           + E A +VL    V   G+  D  +  +L   C     ++ +   ++    PD V +  L
Sbjct: 208 EVEEALRVLDCMSVSPNGINYD-TILRSLCDRCKLKQGMEVLDRQLQIKCYPDVVTYTEL 266

Query: 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220
           I A  +   V +A  +L EM ++     P+ +T  AL+K   N G++D      K +  Y
Sbjct: 267 IDAACKDSRVGQAMKLLIEMVSK--ECKPNVVTYNALIKGICNEGRLDEVIRFLKNLPSY 324

Query: 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
             +     YTI ++  S  G W  A  +   M  KG   + V  + LI+F    G +  A
Sbjct: 325 GYQPDVISYTIVLHSLSSGGRWTDAMKLLASMLCKGCSLNVVTFNTLINFLCQKGLLGKA 384

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
           F +L+       +   ISY+  +G   N K+        E M S    P + T N L+ A
Sbjct: 385 FNVLEMIXKHVCTPNSISYNPSIGGFCNEKS-----XYLEIMVSRGCYPDIVTYNILLAA 439

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           LC   ++   +E+L  +   GL P+ ITYSI++    +    ++ L LL +A   G+ PN
Sbjct: 440 LCKDRKVDDAVEILKQLSFKGLKPDVITYSIIIDGLLKVGKTDLALELLEEACTKGLKPN 499

Query: 401 LVMFKCIIGMCSRR 414
           L+ F  ++G  SR+
Sbjct: 500 LITFTSVVGGISRK 513



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 134/297 (45%), Gaps = 36/297 (12%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAM- 146
           P + T+N L+  +C   +  E   + L+ +   G + D   YT ++ + +  G+  DAM 
Sbjct: 293 PNVVTYNALIKGICNEGRLDE-VIRFLKNLPSYGYQPDVISYTIVLHSLSSGGRWTDAMK 351

Query: 147 ------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT----IGA 196
                  +    + V FN LI    Q G + +AF+VL EM  + H   P+ I+    IG 
Sbjct: 352 LLASMLCKGCSLNVVTFNTLINFLCQKGLLGKAFNVL-EMIXK-HVCTPNSISYNPSIGG 409

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
                +   ++  +R  Y  I  YNI        +A  C  +  D   A  +   ++ KG
Sbjct: 410 FCNEKSXYLEIMVSRGCYPDIVTYNI-------LLAALCKDRKVDD--AVEILKQLSFKG 460

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD +  S +ID     GK + A E+L+EA  +G+   +I+++S++G  S      +A+
Sbjct: 461 LKPDVITYSIIIDGLLKVGKTDLALELLEEACTKGLKPNLITFTSVVGGISRKGKVHEAI 520

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +++  ++ + ++P     N +I  LC   Q            S G  P   TY+IL+
Sbjct: 521 KIFHFLEGLGIRPNAFAYNLIIMGLCKTQQ-----------TSRGCKPTEATYNILV 566


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 184/401 (45%), Gaps = 23/401 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+      GR+S+   L E M + G       Y+      CK  + + EA + F  
Sbjct: 12  TYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE-LDEALKIFDG 70

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
                  P + T+N L++  C + K  E    + R+V E  L  D   Y +L+    K+G
Sbjct: 71  AVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSE-NLVPDVVTYNSLVNGLCKNG 129

Query: 142 KVDA-----MFENVKPDRVVFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +VD      + +   P+ + ++ LI+  C +   V  A  +   +  + +  +P+  T  
Sbjct: 130 RVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGY--EPEVPTYN 187

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            L+       +V+ A E++  + K+ ++     YT+ I+   + G  E A  +  DM +K
Sbjct: 188 ILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEK 247

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G +PD V  +A+I+      +V+ A  +L   + +G S   IS+++L+     A  W+KA
Sbjct: 248 GCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKA 307

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---GLCPNTITYSIL 372
           +  ++ M    +KPTV T N L+  LC   Q  +  E ++   ++   G  P+ +TYS L
Sbjct: 308 MTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSAL 367

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
           +    +   ++    LL   +  G IPN+  +  +I G+C 
Sbjct: 368 IDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCG 408



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 149/336 (44%), Gaps = 20/336 (5%)

Query: 20  NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           N   DV       N L + GR+ E   L+ D   KG       Y      +C+  + + E
Sbjct: 110 NLVPDVVTYNSLVNGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCRELRGVSE 166

Query: 80  AFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A + F  V      P + T+N+L+           AF++   + + GL+ D   YT  I 
Sbjct: 167 ALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFID 226

Query: 136 TCAKSGKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K+G+V DA+        +   PD V  NA+I    +   VD A  +L+ M  E    
Sbjct: 227 GLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGM--EAKGC 284

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--C-CSQTGDWEF 244
            P+ I+   L+     AG+  +A   +K + K  +K T   Y I ++  C   Q G  + 
Sbjct: 285 SPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKE 344

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A +++D M +KG +PD V  SALID  G AGK++ A  +L   + +G    + +Y+SL+ 
Sbjct: 345 AITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLIS 404

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
                +   +ALEL+  M      P   T   +I+A
Sbjct: 405 GLCGLEKVDEALELFVAMVEKGCVPDTITYGTIISA 440



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 148/322 (45%), Gaps = 49/322 (15%)

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
           H   P+ IT  AL+    N G++  A+ +Y+ + K         Y   ++   + G+ + 
Sbjct: 4   HGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDE 63

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ------------------- 285
           A  ++D   K+G +PD V  +ALI+    A K++ A  ILQ                   
Sbjct: 64  ALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVN 123

Query: 286 ---------EAK----NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTV 331
                    EA+    ++G S  +I+YS+L+ G C   +   +AL+L+  +     +P V
Sbjct: 124 GLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEV 183

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T N LI  L   D++ +  E+ S +   GL P+ ITY++ +    +   VE  L++L  
Sbjct: 184 PTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKD 243

Query: 392 AKEDGVIPNLVMFKCII-GMC-SRRYEKARTL---------NEHVLSFNS---GRPQIEN 437
             E G +P++V    +I G+C  +R ++A  L         + + +SFN+   G+ +   
Sbjct: 244 MDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCR-AG 302

Query: 438 KWTSLALMVYREAIVAGTIPTV 459
           KW   A+  ++E +  G  PTV
Sbjct: 303 KWKK-AMTTFKEMLKRGVKPTV 323



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 148/337 (43%), Gaps = 15/337 (4%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
           P   T+N L+S +C   + S+      R+++ AG   D   Y TL+    K G++D    
Sbjct: 8   PNRITYNALLSGLCNGGRMSDAQALYERMIK-AGYSPDVVTYNTLLHGFCKVGELDEALK 66

Query: 145 ----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
               A+     PD V +NALI    ++  +D A  +L  M +E   + PD +T  +L+  
Sbjct: 67  IFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSE--NLVPDVVTYNSLVNG 124

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G+VD AR +  ++ K          T+    C +      A  ++  + K+G  P+
Sbjct: 125 LCKNGRVDEARML--IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPE 182

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID      +V  AFE+       G+    I+Y+  +     A   + AL + +
Sbjct: 183 VPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLK 242

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M      P V + NA+I  LC   ++ +   +LS M++ G  PN I+++ L+    R  
Sbjct: 243 DMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAG 302

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYE 416
             +  +    +  + GV P +V +  ++ G+C  R E
Sbjct: 303 KWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQE 339



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 85/180 (47%), Gaps = 8/180 (4%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M K G  P+ +  +AL+    + G++  A  + +     G S  +++Y++L+        
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +AL++++        P V T NALI   C  D+L +   +L  M S  L P+ +TY+ 
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS 430
           L+    +   V+   ML+    + G  PN++ +  +I G+C     + R ++E +  F S
Sbjct: 121 LVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLISGLC----RELRGVSEALKLFGS 173


>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
          Length = 730

 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 140/289 (48%), Gaps = 10/289 (3%)

Query: 130 YTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGA-VDRAFDVLAEMN--AEV-- 184
           YT L+      G        +KP+ V +NA+I ACG+ G   +RA ++  EMN  +E+  
Sbjct: 151 YTFLLRELGNRGD-----SGLKPNLVTYNAVIDACGKGGVDFNRAAEIFDEMNLFSEMLY 205

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             ++ D  T   L+ A    GQ+D A ++   + + +I      Y+  I+  ++ G  + 
Sbjct: 206 RGIEQDIFTYNTLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDE 265

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A +++++M    +  D V  + L+      G+ E A  + +E ++ GI    ++Y++L+G
Sbjct: 266 ALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLG 325

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                  +++   ++E MK+ ++ P + T + LI     G    + MEV  + K  GL  
Sbjct: 326 GYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKA 385

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           + + YS L+ A  +   VE  +  L +  ++G+ PN+V +  II    R
Sbjct: 386 DVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGR 434



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 175/417 (41%), Gaps = 63/417 (15%)

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           +++A++ A RF            N    +C S  D     + L    ++GLK +   Y  
Sbjct: 117 AEEALRHAIRFASDDKGIDSVLLNFESRLCGSD-DYTFLLRELGNRGDSGLKPNLVTYNA 175

Query: 133 LITTCAKSGKVD----------------AMFENVKPDRVVFNALITACGQSGAVDRAFDV 176
           +I  C K G VD                 ++  ++ D   +N L+ A  + G +D AF +
Sbjct: 176 VIDACGKGG-VDFNRAAEIFDEMNLFSEMLYRGIEQDIFTYNTLLDAVCKGGQMDLAFQI 234

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
           ++EM  +   + P+ +T   ++   A AG++D A  ++  +   +I      Y   ++  
Sbjct: 235 MSEMPRK--HIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIY 292

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           ++ G +E A +V  +M   G+  D V  +AL+   G  GK E    + +E K + I   +
Sbjct: 293 AKLGRFEEALNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNL 352

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           ++YS+L+   S    +Q+A+E++   K   LK  V   +ALI ALC    +   +  L +
Sbjct: 353 LTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDE 412

Query: 357 MKSLGLCPNTITYSILLVACERKDDV------EVG------------------------- 385
           M   G+ PN +TY+ ++ A  R   V      EVG                         
Sbjct: 413 MTKEGIRPNVVTYNSIIDAFGRSGIVEDATESEVGDKEDNQIIKIFGQLAAEKTCHAKKE 472

Query: 386 ----------LMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNS 430
                     L +  +  E  + PN+V F  I+  CSR   +E A  L E +  F++
Sbjct: 473 NRGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDN 529



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 142/329 (43%), Gaps = 62/329 (18%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN L+    + GR  E +++ ++ME  G+   D V +         Q   +E  R F+ 
Sbjct: 284 SYNTLLSIYAKLGRFEEALNVCKEMESSGI-KKDAVTYNALLGGYGKQGKYEEVKRVFEE 342

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P L T++ L+ V +     + A +V R  ++AGLKAD  LY+ LI    K+G 
Sbjct: 343 MKAERIFPNLLTYSTLIDVYSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGL 402

Query: 143 VDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFD-------------VLAEMN 181
           V++          E ++P+ V +N++I A G+SG V+ A +             +  ++ 
Sbjct: 403 VESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIVEDATESEVGDKEDNQIIKIFGQLA 462

Query: 182 AE------------------------VHPVD--PDHITIGALMKACANAGQVDRAREVYK 215
           AE                        +H +D  P+ +T  A++ AC+     + A  + +
Sbjct: 463 AEKTCHAKKENRGRQEILCILAVFHKMHELDIKPNVVTFSAILNACSRCNSFEDASMLLE 522

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGD--WEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
            +  ++     +VY +A       GD  W  A S++D++ +        F +AL D   H
Sbjct: 523 ELRLFD----NQVYGVAHGLLMGYGDNVWVQAQSLFDEVKQMDSSTASAFYNALTDMLWH 578

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSL 302
            G+   A  ++ E K + +   + S S L
Sbjct: 579 FGQRRGAQLVVLEGKRRHVWENMWSNSCL 607


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 172/400 (43%), Gaps = 20/400 (5%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V    ++YN LI     +G++ + + +L+DM  +G       Y+      CK  +  ++A
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKG-RGYRQA 61

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL--- 133
                L+      P   T+N+LM       D + A ++LR +   G K     Y T+   
Sbjct: 62  MELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKG 121

Query: 134 ITTCAKSGKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
           + +  + G  D +      EN  P+   FN +I +  + G + +A  +L +M+   H   
Sbjct: 122 LCSAERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSK--HGCT 179

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
            + +T  A++        VD A  +   +  Y  K     Y   +        W  A  +
Sbjct: 180 ANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEEL 239

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            D+MT+ G +PD V  + LI F    G +  A E+ ++  ++G +   I+YS+++   + 
Sbjct: 240 MDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAK 299

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           A    +ALEL+  M      P       L   L D D + + ++ +  ++  G+ P+T+ 
Sbjct: 300 ATKLDQALELFNEMGHKGFNPD-KIYQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVL 358

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           Y+ +L+   R    E  + +++     G +P+ + +  +I
Sbjct: 359 YNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVILI 398



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 135/312 (43%), Gaps = 22/312 (7%)

Query: 130 YTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y  LI T  + G+V        D +     PD V +N L+ A  +     +A +++  M 
Sbjct: 10  YNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMR 69

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
           AE     P+++T   LM      G VD A E+ + +  +  K +   Y   +        
Sbjct: 70  AE--GCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAER 127

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
           W  A  +  +M ++   P+E   + +I      G ++ A ++L++    G +  I++Y++
Sbjct: 128 WGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNA 187

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           ++      +N   A+ L   MKS   KP + T N L+  LC   +     E++ +M   G
Sbjct: 188 IINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNG 247

Query: 362 LCPNTITYSILL-VACERK---DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK 417
             P+ +T++ L+   C++    D +EV      Q  + G  PN + +  II        K
Sbjct: 248 CLPDNVTFNTLIGFLCQKGLMVDAIEV----FKQMPDKGCTPNSITYSTIIS----GLAK 299

Query: 418 ARTLNEHVLSFN 429
           A  L++ +  FN
Sbjct: 300 ATKLDQALELFN 311



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 6/161 (3%)

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V P+    + LI      G+V  A  +L +   +G +  +++Y+ L+ A    + +++A+
Sbjct: 3   VQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAM 62

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---L 373
           EL + M++    P   T N L+  +C    +   +E+L ++ S G  P+T+ Y+ +   L
Sbjct: 63  ELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGL 122

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
            + ER  D +    L+++   +   PN   F  +I    R+
Sbjct: 123 CSAERWGDAD---ELVTEMLRENCPPNEATFNVVIYSLCRK 160


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 114/515 (22%), Positives = 219/515 (42%), Gaps = 54/515 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + G++ +    L +++ KG+   D V +    +   SQ  ++EAF     +P+   
Sbjct: 233 NALCKDGKMEKVGTFLSEVQEKGVYP-DIVTYNTLISAYSSQGLMEEAFELMHAMPSKGF 291

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P + T+N +++        E A +V   +  +GL  D   Y +L+    K G       
Sbjct: 292 SPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETEN 351

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGAL 197
              D    +V PD V F+++++   +SG +D+A   F+ + E       + PD++    L
Sbjct: 352 IFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG-----LIPDNVIYTIL 406

Query: 198 MKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++     G +  A  +  +M+ +          TI    C +    E A  ++++MT++G
Sbjct: 407 IQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGE-ADKLFNEMTERG 465

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD   L+ LID     G ++ A E+ ++ K + I + +++Y++L+       +   A 
Sbjct: 466 LFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAK 525

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           E++  M S ++ PT  + + L+ ALC    L +   V  +M S  + P  +  + ++   
Sbjct: 526 EIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGY 585

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIE 436
            R  +   G + L +   +G +P+ + +  +I                      G  + E
Sbjct: 586 CRSGNASDGEIFLEKMISEGFVPDCISYNTLI---------------------YGFVKEE 624

Query: 437 NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADAL 492
           N   +  L+   E    G +P V   + +L       Q+     +  +++E  GV+ D  
Sbjct: 625 NMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIER-GVNPD-- 681

Query: 493 KRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
            RS   SLI+GF   D    AF   +E    G  P
Sbjct: 682 -RSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSP 715



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 161/332 (48%), Gaps = 16/332 (4%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F    + +LS   M+  +  S + S+    VLR+++ +G+ +  ++  +L++T +  G  
Sbjct: 96  FPNFKHTSLSLSAMIHILVRSGRLSDAQSCVLRMIRRSGV-SRVEIVNSLVSTYSNCGSN 154

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           D+          VF+ LI    Q+  +  A++    + ++ + V  D     AL+ +   
Sbjct: 155 DS----------VFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSID--ACNALIGSLVR 202

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G V+ A  +Y+ I +  +        I +N   + G  E   +   ++ +KGV PD V 
Sbjct: 203 IGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVT 262

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHM 322
            + LI      G +E AFE++    ++G S G+ +Y++++ G C + K +++A E++  M
Sbjct: 263 YNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGK-YERAKEVFAEM 321

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               L P  +T  +L+   C      +T  + SDM+S  + P+ + +S ++    R  ++
Sbjct: 322 LRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNL 381

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           +  LM  +  KE G+IP+ V++  +I G C +
Sbjct: 382 DKALMYFNSVKEAGLIPDNVIYTILIQGYCRK 413



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 102/261 (39%), Gaps = 42/261 (16%)

Query: 207 VDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           V R   V  ++  Y N      V+ + I    Q      A   +  +  KG        +
Sbjct: 135 VSRVEIVNSLVSTYSNCGSNDSVFDLLIRTFVQARKLREAYEAFTLLRSKGYTVSIDACN 194

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           ALI      G VE A+ I QE    G+ V + + + ++ A       +K       ++  
Sbjct: 195 ALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEK 254

Query: 326 KLKPTVSTMNALITA-----------------------------------LCDGDQLPKT 350
            + P + T N LI+A                                   LC   +  + 
Sbjct: 255 GVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERA 314

Query: 351 MEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            EV ++M   GL P++ TY S+L+ AC++ D VE    + S  +   V+P+LV F  ++ 
Sbjct: 315 KEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETE-NIFSDMRSRDVVPDLVCFSSMMS 373

Query: 410 MCSRRYEKARTLNEHVLSFNS 430
           + +R    +  L++ ++ FNS
Sbjct: 374 LFTR----SGNLDKALMYFNS 390



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 75/182 (41%), Gaps = 8/182 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           PT  +F++L++   S      AF+V   +    +K    +  ++I    +SG        
Sbjct: 538 PTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIF 597

Query: 145 ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               + E   PD + +N LI    +   + +AF ++ +M  +   + PD  T  +++   
Sbjct: 598 LEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGF 657

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               Q+  A  V + + +  +      YT  IN      +   A   +D+M ++G  PD+
Sbjct: 658 CRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPDD 717

Query: 262 VF 263
            F
Sbjct: 718 KF 719


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 193/419 (46%), Gaps = 34/419 (8%)

Query: 35  LIRQGRISECIDLLEDMERK--GLLDMDKV-YHARFFNVCKS---QKAIK--EAFRFFKL 86
           L R+ RI E  +L ++ME +  G    D V Y A     CKS   +KA+K        K 
Sbjct: 161 LCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKC 220

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA- 145
           VPN  + T++ L+     + D + A  + R +   G   +   YTTLI     + KVDA 
Sbjct: 221 VPN--VVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAA 278

Query: 146 ------MFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                 M     P D V +NAL+    + G ++ A  +  EM A+     PD IT   L+
Sbjct: 279 RLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAK--SCLPDRITYTCLV 336

Query: 199 KACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +   NA +++ AR + + M     I      Y+I +   S+   +  A     +M  + V
Sbjct: 337 RGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNV 396

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P+ V  S+LID    AG+V  A E+L+      +    ++Y+ ++         ++AL 
Sbjct: 397 APNAVTYSSLIDGLCKAGRVNHAMEVLKNVDKPDV----VTYTIVIEGLCGTDRTEEALT 452

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L E M + +++P+V T N++I ALC    + +  ++L  M + GL P  +TY+ LL    
Sbjct: 453 LLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFS 512

Query: 378 RKDDVEVGLMLLS----QAKEDGVIPNLV---MFKCII-GMC-SRRYEKARTLNEHVLS 427
           R   +E+   L      +AK+     NLV    F  +I G+C +R  +KA  + E + S
Sbjct: 513 RTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRS 571



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 184/408 (45%), Gaps = 23/408 (5%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           A DV       + L R G++    +++ +M+ KG+      + A     C ++K + EA 
Sbjct: 78  APDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARK-VDEAL 136

Query: 82  RFFKLVPNPT-----LSTFNMLMSVCASSKDSEG--AFQVLRLVQEAGLKADCKLYTTLI 134
           + +K +   +     +S+  ++  +C   +  E    FQ + + ++   K D   YT LI
Sbjct: 137 KLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALI 196

Query: 135 TTCAKSGKVD------AMFENVK--PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               KSG ++       + E  K  P+ V +++L+    ++G +D+A D+   M ++   
Sbjct: 197 DGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSK--G 254

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             P+ +T   L+     A +VD AR +   +           Y   ++   + G  E A 
Sbjct: 255 CVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAK 314

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN-QGISVGIISYSSLMGA 305
            ++ +M  K  +PD +  + L+    +A ++E A  +L+  K   GI   +++YS ++  
Sbjct: 315 QLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAG 374

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
            S AK + +A E  + M +  + P   T ++LI  LC   ++   MEVL ++      P+
Sbjct: 375 YSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVLKNVDK----PD 430

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            +TY+I++      D  E  L LL +     V P++  F  +IG   R
Sbjct: 431 VVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCR 478



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/361 (24%), Positives = 171/361 (47%), Gaps = 17/361 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFE 148
           P   T+N++++    ++ +  A++VL+ +++   +  D   Y+T+I    K G++D   E
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 149 NVK---------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            ++         PD V + +++    + G +DRA +++ EM  ++  V+PD  T  AL+ 
Sbjct: 67  ILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREM--KLKGVEPDKFTFSALIT 124

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---G 256
              NA +VD A ++YK I   + +      +  I    +      A  ++ +M  +    
Sbjct: 125 GWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGA 184

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
             PD V  +ALID    +G +E A ++L   + +     +++YSSL+     A +  +AL
Sbjct: 185 WKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQAL 244

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +L+  M S    P V T   LI  LC   ++     ++ +M +     +T++Y+ LL   
Sbjct: 245 DLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGY 304

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQ 434
            R   +E    L  +      +P+ + + C++ G C + R E+AR L E++ +     P 
Sbjct: 305 CRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPD 364

Query: 435 I 435
           +
Sbjct: 365 V 365



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 169/404 (41%), Gaps = 53/404 (13%)

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQV 114
           ++ Y+     +CK++   K A+   K + +     P L T++ +++      + + A ++
Sbjct: 9   ERTYNVVVNGLCKARLTSK-AYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEI 67

Query: 115 LR-LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACG 165
           LR +V   G+  D   YT+++    + GK+D   E         V+PD+  F+ALIT   
Sbjct: 68  LREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWC 127

Query: 166 QSGAVDRAFDVLAEMNAEVHPVD------------------------------------P 189
            +  VD A  +  E+      +D                                    P
Sbjct: 128 NARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKP 187

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D +T  AL+     +G +++A ++  ++           Y+  ++   + GD + A  ++
Sbjct: 188 DVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLF 247

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
             MT KG +P+ V  + LI     A KV+AA  ++ E          +SY++L+      
Sbjct: 248 RRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRL 307

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTIT 368
              ++A +L++ M +    P   T   L+   C+  +L +   +L +MK+  G+ P+ +T
Sbjct: 308 GRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVT 367

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           YSI++    R          + +     V PN V +  +I G+C
Sbjct: 368 YSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLC 411



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 63/287 (21%), Positives = 124/287 (43%), Gaps = 33/287 (11%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +Y  L+R      R+ E   LLE+M+    +D D V ++         K   EA  F + 
Sbjct: 331 TYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQE 390

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                + PN    T++ L+     +     A +VL+ V     K D   YT +I     +
Sbjct: 391 MIARNVAPNAV--TYSSLIDGLCKAGRVNHAMEVLKNVD----KPDVVTYTIVIEGLCGT 444

Query: 141 GKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            + +           + V+P    FN++I A  + G +D A+ +L  M A  H ++P  +
Sbjct: 445 DRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAA--HGLEPGMV 502

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGT------PE-VYTIAINCCSQTGDWEFA 245
           T   L++  +  G+++ A E+++++ +   K +      PE  ++  I    +  + + A
Sbjct: 503 TYTTLLEGFSRTGRMEIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKA 562

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
            +V +++  +   P E    A++D    AG+ E A +++      G+
Sbjct: 563 MAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 609


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 156/329 (47%), Gaps = 17/329 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCA--KSGKVDAM 146
           P + T+N++++        + A ++L  +   G + D   YTT++   CA  +   V  +
Sbjct: 220 PNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVL 279

Query: 147 F-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F     +   P+ V F+ L+    + G V+RA  VL +M+   H   P+      ++ A 
Sbjct: 280 FAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQ--HGCTPNTTLCNIVINAI 337

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+VD A +    +  Y        YT  +    + G WE A  +  +M +K   P+E
Sbjct: 338 CKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNE 397

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
           V  +  I      G +E A ++++     G SVGI++Y++L+ G C   +    ALEL+ 
Sbjct: 398 VTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGR-VDSALELFN 456

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERK 379
           ++     +P   T   L+T LC  ++L    E+L++M     CP N +T+++L+    +K
Sbjct: 457 NLPC---EPNTITYTTLLTGLCHAERLDAAAELLAEMIQKD-CPLNAVTFNVLVSFFCQK 512

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             VE  + L++Q  E G  PNL+ F  ++
Sbjct: 513 GFVEEAMELVNQMMEHGCTPNLITFNTLL 541



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/393 (20%), Positives = 173/393 (44%), Gaps = 17/393 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N + R+GR+ +  ++L  +   G       Y      +C +++       F ++V     
Sbjct: 230 NGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCV 289

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   TF+ML+         E A QVL+ + + G   +  L   +I    K G+VD  ++ 
Sbjct: 290 PNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDF 349

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                     PD + +  ++    ++G  + A ++L EM  +  P  P+ +T    +   
Sbjct: 350 LNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCP--PNEVTFNTFICIL 407

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G +++A ++ +++ +Y        Y   ++     G  + A  +++++  +   P+ 
Sbjct: 408 CQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCE---PNT 464

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + L+    HA +++AA E+L E   +   +  ++++ L+         ++A+EL   
Sbjct: 465 ITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQ 524

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M      P + T N L+  +       + +E+L  + S G+  +TITYS ++    R+D 
Sbjct: 525 MMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDR 584

Query: 382 VEVGLMLLSQAKEDGVIPNLVMF-KCIIGMCSR 413
            E  + +L   ++ G+ P + M+ K +  +C R
Sbjct: 585 TEEAIQMLHAVQDMGMRPKVGMYNKILFALCKR 617



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 114/243 (46%), Gaps = 5/243 (2%)

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            YT+ +    ++  +  A +V D+M  KG  P+ V  + +I+     G+V+ A EIL   
Sbjct: 189 TYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRL 248

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
            + G    I+SY++++     A+ W     L+  M   K  P   T + L+   C G  +
Sbjct: 249 SSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMV 308

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            + ++VL  M   G  PNT   +I++ A  ++  V+     L+     G  P+ + +  +
Sbjct: 309 ERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTV 368

Query: 408 I-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 465
           + G+C + R+E A+ L   ++  N   P  E  + +   ++ ++ ++   I  +E++ + 
Sbjct: 369 LRGLCRAGRWEHAKELLPEMVRKNC--PPNEVTFNTFICILCQKGLIEQAIKLIELMPE- 425

Query: 466 LGC 468
            GC
Sbjct: 426 YGC 428



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 106/262 (40%), Gaps = 3/262 (1%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           +P  V +  L+ A  +S     A +VL EM A+     P+ +T   ++      G+VD A
Sbjct: 184 QPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAK--GCTPNIVTYNVIINGMCREGRVDDA 241

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           +E+   +  Y  +     YT  +        W+    ++ +M  K  +P+EV    L+ F
Sbjct: 242 KEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRF 301

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G VE A ++LQ+    G +      + ++ A         A +   +M      P 
Sbjct: 302 FCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPD 361

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
             +   ++  LC   +     E+L +M      PN +T++  +    +K  +E  + L+ 
Sbjct: 362 TISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIE 421

Query: 391 QAKEDGVIPNLVMFKCII-GMC 411
              E G    +V +  ++ G C
Sbjct: 422 LMPEYGCSVGIVTYNALVHGFC 443



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/157 (19%), Positives = 66/157 (42%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M ++G  P  V  + L++    +     A  +L E + +G +  I++Y+ ++        
Sbjct: 178 MLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGR 237

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
              A E+   + S   +P + +   ++  LC   +      + ++M      PN +T+ +
Sbjct: 238 VDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDM 297

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L+    R   VE  + +L Q  + G  PN  +   +I
Sbjct: 298 LVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVI 334


>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
          Length = 604

 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 176/404 (43%), Gaps = 21/404 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCK---SQKAIKEAFRFFKLVPNP 90
           L+ +G+  +   L  +M  +G    D V Y A     CK      AI+      ++   P
Sbjct: 171 LMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQP 230

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
           T   + ML+++     D+ GA  +   ++    + D   YT LI    K+G++D  +   
Sbjct: 231 TTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFF 290

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                E  +PD V  N +I   G++G +D A  +  EM  E     P  +T   ++KA  
Sbjct: 291 CEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEM--ETLRCIPSVVTYNTIIKALF 348

Query: 203 NAGQVDRAREV---YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            +    RA EV   ++ + +  I  +   Y+I I+   +T   E A  + ++M +KG  P
Sbjct: 349 ESKS--RASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPP 406

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
                 +LID  G A + + A E+ QE K    S     Y+ ++     A     A+ ++
Sbjct: 407 CPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMF 466

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M  +   P V   NAL++ L     L + +  +  M+  G  P+  +Y+I+L    + 
Sbjct: 467 DEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKT 526

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 421
                 + +LS  K+  V P++V +  ++G  S    +E+A  L
Sbjct: 527 GGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKL 570



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 154/363 (42%), Gaps = 47/363 (12%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LIR     GRI E      +M+R+G    D V+     N       + +A + F+ 
Sbjct: 269 TYTELIRGLGKAGRIDEAYHFFCEMQREGCRP-DTVFMNNMINFLGKAGRLDDAMKLFQE 327

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P++ T+N ++     SK                               +++ +
Sbjct: 328 METLRCIPSVVTYNTIIKALFESK-------------------------------SRASE 356

Query: 143 VDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
           V + FE +K     P    ++ LI    ++  +++A  +L EM+ +  P  P      +L
Sbjct: 357 VPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCP--AAYCSL 414

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           + A   A + D A E+++ + +     +  VY + I    + G  + A +++D+M K G 
Sbjct: 415 IDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGC 474

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD    +AL+      G ++ A   ++  +  G    I SY+ ++   +      +A+E
Sbjct: 475 APDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAME 534

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           +  +MK   ++P V + N ++ AL       +  +++ +M +LG   + ITYS +L A  
Sbjct: 535 MLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLITYSSILEAIG 594

Query: 378 RKD 380
           + D
Sbjct: 595 KVD 597



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 154/379 (40%), Gaps = 45/379 (11%)

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
           AE   EV  +  DH  +  +MK   + G   + +       + N +     Y   I+C  
Sbjct: 44  AEKALEVLMLRVDHWLVREVMKT--DVGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLE 101

Query: 238 QTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
               +     +  +M +     V P E  LS ++   G+A  V  A  I  + K +    
Sbjct: 102 VVEQYGEMWKMIQEMVRNPICVVTPTE--LSDVVRMLGNAKMVRQAITIFYQIKTRKCQP 159

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEV 353
              +Y+S++    +   ++K  +LY  M +     P   T +ALI+A C   +    +++
Sbjct: 160 IAQAYNSMIIMLMHEGQYEKVHQLYNEMSTEGHCFPDTVTYSALISAFCKLGRRDSAIQL 219

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           L++MK +G+ P T  Y++L+    + +D    L L  + +     P++  +  +I    R
Sbjct: 220 LNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELI----R 275

Query: 414 RYEKARTLNEHVLSF-----NSGRPQ---IENKWTSL--------ALMVYREAIVAGTIP 457
              KA  ++E    F        RP    + N    L        A+ +++E      IP
Sbjct: 276 GLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIP 335

Query: 458 TVEVVSKVLGCLQLPYNADIR--------ERLVENLGVSADALKRSNLCSLIDGFGEYD- 508
           +V   + ++  L   + +  R        ER+ E+ G+S  +   S    LIDGF + + 
Sbjct: 336 SVVTYNTIIKAL---FESKSRASEVPSWFERMKES-GISPSSFTYS---ILIDGFCKTNR 388

Query: 509 -PRAFSLLEEAASFGIVPC 526
             +A  LLEE    G  PC
Sbjct: 389 MEKAMMLLEEMDEKGFPPC 407


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 151/319 (47%), Gaps = 14/319 (4%)

Query: 114 VLRLVQE---AGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALIT 162
           VL+L++E    GLK +   Y  +I    K+GKV        + + E + PD V++  LI 
Sbjct: 207 VLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLID 266

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
              + G V  A+ +  EM  +   + PD IT  A++      G+V  A +++  +    +
Sbjct: 267 GFCKLGNVSSAYRLFDEM--QKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRL 324

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           +     YT  I+   + G  + A S+++ M + G+ P+ V  +AL D     G+V+ A E
Sbjct: 325 EPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANE 384

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +L E   +G+ + I +Y+SL+     A N  +A++L + M+     P   T   L+ A C
Sbjct: 385 LLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYC 444

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
              ++ +  E+L  M    L P  +T+++L+        +E G  LL    E G++PN  
Sbjct: 445 KSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNAT 504

Query: 403 MFKCIIGM-CSRRYEKART 420
            +  +I   C R   +A T
Sbjct: 505 TYNSLIKQYCIRNNMRATT 523



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 158/343 (46%), Gaps = 19/343 (5%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVPNPTLSTFNML 98
           + L+E+M+ KGL      Y+     +CK+ K + EA R  +      + P+  + T  ++
Sbjct: 208 LKLIEEMQIKGLKPNPYTYNGVILLLCKTGK-VAEAERVLREMISEGIAPDGVIYT-TLI 265

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMF-----ENV 150
              C     S  A+++   +Q+  +  D   YT +I    ++G+V   D +F     + +
Sbjct: 266 DGFCKLGNVS-SAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRL 324

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           +PD V + ALI    + G +  AF +  +M      + P+ +T  AL       G+VD A
Sbjct: 325 EPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQ--MGLTPNIVTYTALADGLCKCGEVDTA 382

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            E+   + +  ++     Y   +N   + G+ + A  +  DM   G  PD V  + L+D 
Sbjct: 383 NELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDA 442

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
              + ++  A E+L++  ++ +   +++++ LM     +   +   +L + M    + P 
Sbjct: 443 YCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPN 502

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            +T N+LI   C  + +  T E+   M + G+ P+  TY+IL+
Sbjct: 503 ATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILI 545



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 165/383 (43%), Gaps = 25/383 (6%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           G +S    L ++M+++ +      Y A    +C++ + ++    F ++V     P   T+
Sbjct: 272 GNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTY 331

Query: 96  NMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------ 148
             L+   C   K  E AF +   + + GL  +   YT L     K G+VD   E      
Sbjct: 332 TALIDGYCKEGKMKE-AFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMC 390

Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              ++ +   +N+L+    ++G +D+A  ++ +M  EV    PD +T   LM A   + +
Sbjct: 391 RKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDM--EVAGFHPDAVTYTTLMDAYCKSRE 448

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           + RA E+ + +    ++ T   + + +N    +G  E    +   M +KG++P+    ++
Sbjct: 449 MVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNS 508

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LI        + A  EI +    +G+     +Y+ L+     A+N ++A  L+  M    
Sbjct: 509 LIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKG 568

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
              TVS+ NALI       +  +  E+   M+  GL  +   Y+I       +  +E+ L
Sbjct: 569 FNLTVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTL 628

Query: 387 MLLSQAKEDGVIPNLVMFKCIIG 409
            L  +A E          KC++G
Sbjct: 629 ELCDEAIE----------KCLVG 641



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 85/173 (49%), Gaps = 3/173 (1%)

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G+W     + ++M  KG+ P+    + +I      GKV  A  +L+E  ++GI+   + Y
Sbjct: 204 GEW--VLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIY 261

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           ++L+       N   A  L++ M+  K+ P   T  A+I  LC   ++ +  ++  +M  
Sbjct: 262 TTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVC 321

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             L P+ +TY+ L+    ++  ++    L +Q  + G+ PN+V +  +  G+C
Sbjct: 322 KRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLC 374



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 105/248 (42%), Gaps = 17/248 (6%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +++YN L+    + G I + + L++DME  G       Y       CKS++ ++     
Sbjct: 397 NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELL 456

Query: 84  FKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +++     PT+ TFN+LM+    S   E   ++L+ + E G+  +   Y +LI      
Sbjct: 457 RQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIR 516

Query: 141 GKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
             + A  E         V PD   +N LI    ++  +  A+ +  +M  +   +     
Sbjct: 517 NNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVS-- 574

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +  AL+K      +   ARE+++ + +  +    E+Y I  +     G  E    + D+ 
Sbjct: 575 SYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKMELTLELCDEA 634

Query: 253 TKKGVIPD 260
            +K ++ D
Sbjct: 635 IEKCLVGD 642



 Score = 46.6 bits (109), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 124/327 (37%), Gaps = 77/327 (23%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L + G +    +LL +M RKGL                                   + T
Sbjct: 373 LCKCGEVDTANELLHEMCRKGL--------------------------------ELNIYT 400

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------ 148
           +N L++    + + + A ++++ ++ AG   D   YTTL+    KS ++    E      
Sbjct: 401 YNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQML 460

Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              ++P  V FN L+     SG ++    +L  M  +   + P+  T  +L+K       
Sbjct: 461 DRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEK--GIMPNATTYNSLIK------- 511

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
                   +   + N++ T E+Y                      M  KGV+PD    + 
Sbjct: 512 --------QYCIRNNMRATTEIYR--------------------GMCAKGVVPDGNTYNI 543

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LI     A  ++ A+ + ++   +G ++ + SY++L+      K + +A EL+E M+   
Sbjct: 544 LIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKKFLEARELFEQMRREG 603

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEV 353
           L       N       D  ++  T+E+
Sbjct: 604 LVADREIYNIFADINYDEGKMELTLEL 630


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 179/395 (45%), Gaps = 16/395 (4%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
           + +S    S N ++ +  + E + L +++  K     + +  A    +C + + IK+A +
Sbjct: 220 YGISPSPESCNAVLCRLPLDEAVQLFQELPEKNTCSYNILLKA----LCTAGR-IKDAHQ 274

Query: 83  FF-KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            F ++   P + T+ +++    +  + E A ++L  +   GL+ +   YT++I      G
Sbjct: 275 LFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEG 334

Query: 142 KV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +V        D +   V  D  VF  +++   + G +  A +   EM  +   +  D +T
Sbjct: 335 QVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEM--QKRGLAADGVT 392

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+     AG++  A  V + +    +      YT+ I+   + G    A  V++ M 
Sbjct: 393 YTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMV 452

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +K V P+ V  +AL D     G V AA E+L E  ++G+ + I +Y+SL+     A N +
Sbjct: 453 QKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLE 512

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A+     M    LKP V T   +I ALC   +L +   +L +M   G+ P  +TY++L+
Sbjct: 513 QAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLM 572

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                   VE G  LL    E  + PN   +  ++
Sbjct: 573 NGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLM 607



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 181/431 (41%), Gaps = 21/431 (4%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LV 87
           +H Y  L     +   I LL +M  +GL +++ V +     +   +  + +A R  + +V
Sbjct: 292 VHGYCTL---SELETAIKLLSEMAARGL-ELNPVAYTSVIALLCDEGQVSDAVRVVEDMV 347

Query: 88  PNPTL---STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV- 143
            +  +   + F  +MS      D   A      +Q+ GL AD   YT LI    ++G++ 
Sbjct: 348 MHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELK 407

Query: 144 -------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                  +   + +  D V +  LI    + G +  AF V  +M  +   V P+ +T  A
Sbjct: 408 EAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKR--VTPNVVTYTA 465

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L       G V  A E+   +    ++     Y   IN   + G+ E A     DM + G
Sbjct: 466 LSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAG 525

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD    + +I     + +++ A  +LQE  ++GI   I++Y+ LM     +   +   
Sbjct: 526 LKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGK 585

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            L E M    + P  +T N+L+   C    +  T E+   M S  + PN  TY+IL+   
Sbjct: 586 RLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGH 645

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFN-SGRP 433
            +  +++  L   S+  E G       +  +I + +  +++ +AR L E +     +  P
Sbjct: 646 CKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEP 705

Query: 434 QIENKWTSLAL 444
            + N +  L+ 
Sbjct: 706 DVYNFYIDLSF 716



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 167/407 (41%), Gaps = 50/407 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L  +G++S+ + ++EDM   G++    V+       C+ +  +  A  +F  +    L+ 
Sbjct: 330 LCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCR-KGDLAAARNWFDEMQKRGLAA 388

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
              T+  L++    + + + A +VL+ +++ GL  D   YT LI    K GK+   F   
Sbjct: 389 DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVH 448

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                + V P+ V + AL     + G V  A ++L EM ++   ++ +  T  +L+    
Sbjct: 449 NKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSK--GLELNIFTYNSLINGLC 506

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AG +++A      + +  +K     YT  I    Q+ + + A S+  +M  KG+ P  V
Sbjct: 507 KAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIV 566

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L++    +G+VE    +L+    + I     +Y+SLM      KN +   E+Y+ M
Sbjct: 567 TYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGM 626

Query: 323 KSIKLKP-----------------------------------TVSTMNALITALCDGDQL 347
            S ++ P                                   T S+ NALI  L    + 
Sbjct: 627 LSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKF 686

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            +   +   M+   L      Y+  +     +D++E  L L  +  E
Sbjct: 687 TEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELVE 733



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 146/381 (38%), Gaps = 93/381 (24%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFF------K 85
           N L R G + E   +L++ME KGL D+D V +    +  CK  K + EAF         +
Sbjct: 398 NGLCRAGELKEAERVLQEMEDKGL-DVDAVTYTVLIDGYCKVGK-MTEAFLVHNKMVQKR 455

Query: 86  LVPNPT---------------------------------LSTFNMLMSVCASSKDSEGAF 112
           + PN                                   + T+N L++    + + E A 
Sbjct: 456 VTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAM 515

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--------AMFENVKPDRVVFNALITAC 164
           + +  + EAGLK D   YTT+I    +S ++D         + + +KP  V +N L+   
Sbjct: 516 RTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575

Query: 165 GQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
             SG V+   R  + + E N     + P+  T  +LMK               +   + N
Sbjct: 576 CMSGRVEGGKRLLEWMLEKN-----IHPNTTTYNSLMK---------------QYCIEKN 615

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           +K T E                    +Y  M  + V+P+E   + LI     A  ++ A 
Sbjct: 616 MKSTTE--------------------IYKGMLSQEVVPNENTYNILIKGHCKARNMKEAL 655

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
               E   +G  +   SY++L+   +  K + +A  L+E M+  +L       N  I   
Sbjct: 656 YFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLS 715

Query: 342 CDGDQLPKTMEVLSDMKSLGL 362
            + D L  T+ +  ++  + L
Sbjct: 716 FNEDNLESTLALCDELVEVTL 736


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 147/314 (46%), Gaps = 18/314 (5%)

Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP--------DRVV 156
           SK  E  FQ L      G   D +    L+    ++GK+D  F   K         DRV 
Sbjct: 476 SKALELWFQFL----NKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVS 531

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +N LI+ C     +D AF  L EM      + PD+ T   L+    N  +V+ A + +  
Sbjct: 532 YNTLISGCCGKKKLDEAFMFLDEMVK--RGLKPDNYTYSILICGLFNMNKVEEAIQFWDD 589

Query: 217 IHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             +  +   P+VYT  + I+ C +    E     +D+M  K V P+ V  + LI     +
Sbjct: 590 CKRNGM--LPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRS 647

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G++  A E+ ++ K++GIS    +Y+SL+   S     ++A  L+E M+   L+P V   
Sbjct: 648 GRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHY 707

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            ALI       Q+ K   +L +M S  + PN ITY++++    R  +V     LL++ +E
Sbjct: 708 TALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMRE 767

Query: 395 DGVIPNLVMFKCII 408
            G++P+ + +K  I
Sbjct: 768 KGIVPDSITYKEFI 781



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 163/385 (42%), Gaps = 13/385 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFKLVPNPT 91
           L R  RI +   +L++M +KG      VY+     F       KAI+          + T
Sbjct: 329 LTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLT 388

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA------ 145
            ST+N L+     +  ++ A ++L+ +   G   +   +T++I         D+      
Sbjct: 389 SSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVG 448

Query: 146 --MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
             +  N+ P   +   LI+   + G   +A ++  +   +   VD    T  AL+     
Sbjct: 449 EMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTR--TSNALLHGLCE 506

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           AG++D A  + K I           Y   I+ C      + A    D+M K+G+ PD   
Sbjct: 507 AGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYT 566

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            S LI    +  KVE A +   + K  G+   + +YS ++  C  A+  ++  E ++ M 
Sbjct: 567 YSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMM 626

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           S  ++P     N LI A C   +L   +E+  DMK  G+ PN+ TY+ L+        VE
Sbjct: 627 SKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVE 686

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
              +L  + + +G+ PN+  +  +I
Sbjct: 687 EAKLLFEEMRMEGLEPNVFHYTALI 711



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 98/496 (19%), Positives = 198/496 (39%), Gaps = 28/496 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L+R     +C +   D+  KG+     ++       CK  K ++EA + F  +      P
Sbjct: 225 LVRANEFQKCCEAF-DVVCKGVSPDVYLFTTAINAFCKGGK-VEEAVKLFSKMEEAGVAP 282

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMF-- 147
            + TFN ++         + AF     + E G++     Y+ L+    ++ ++ DA F  
Sbjct: 283 NVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVL 342

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                +   P+ +V+N LI +  ++G++++A ++   M ++   +     T   L+K   
Sbjct: 343 KEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS--TYNTLIKGYC 400

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             GQ D A  + K +           +T  I        ++ A     +M  + + P   
Sbjct: 401 KNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGG 460

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
            L+ LI      GK   A E+  +  N+G  V   + ++L+     A    +A  + + +
Sbjct: 461 LLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEI 520

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
                     + N LI+  C   +L +    L +M   GL P+  TYSIL+      + V
Sbjct: 521 LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKV 580

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG--------- 431
           E  +      K +G++P++  +  +I  C +  R E+ +   + ++S N           
Sbjct: 581 EEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHL 640

Query: 432 -RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSAD 490
            R    +   S+AL +  +    G  P     + ++  + +    +  + L E + +   
Sbjct: 641 IRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGL 700

Query: 491 ALKRSNLCSLIDGFGE 506
                +  +LIDG+G+
Sbjct: 701 EPNVFHYTALIDGYGK 716



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 137/316 (43%), Gaps = 15/316 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L + G+ S+ ++L      KG +   +  +A    +C++ K + EAFR  K +       
Sbjct: 469 LCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGK-LDEAFRIQKEILGRGCVM 527

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
              ++N L+S C   K  + AF  L  + + GLK D   Y+ LI       KV+   +  
Sbjct: 528 DRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFW 587

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  + PD   ++ +I  C ++   +   +   EM ++   V P+ +    L++A  
Sbjct: 588 DDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSK--NVQPNTVVYNHLIRAYC 645

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            +G++  A E+ + +    I      YT  I   S     E A  ++++M  +G+ P+  
Sbjct: 646 RSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVF 705

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +ALID  G  G++     +L+E  ++ +    I+Y+ ++G  +   N  +A  L   M
Sbjct: 706 HYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEM 765

Query: 323 KSIKLKPTVSTMNALI 338
           +   + P   T    I
Sbjct: 766 REKGIVPDSITYKEFI 781



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 155/383 (40%), Gaps = 22/383 (5%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFN 96
           +S C D  E++ RK    + +VY  +F      +     A   F ++ N    P+ +T N
Sbjct: 167 LSLCFD--EEIRRKMSDLLIEVYCTQF-----KRDGCYLALDVFPVLANKGMFPSKTTCN 219

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------- 148
           +L++    + + +   +   +V + G+  D  L+TT I    K GKV+   +        
Sbjct: 220 ILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEA 278

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            V P+ V FN +I   G  G  D AF +  E   E   ++P  IT   L+K    A ++ 
Sbjct: 279 GVAPNVVTFNTVIDGLGMCGRYDEAF-MFKEKMVE-RGMEPTLITYSILVKGLTRAKRIG 336

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A  V K + K        VY   I+   + G    A  + D M  KG+       + LI
Sbjct: 337 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 396

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                 G+ + A  +L+E  + G +V   S++S++    +   +  AL     M    + 
Sbjct: 397 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 456

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P    +  LI+ LC   +  K +E+     + G   +T T + LL        ++    +
Sbjct: 457 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 516

Query: 389 LSQAKEDGVIPNLVMFKCIIGMC 411
             +    G + + V +  +I  C
Sbjct: 517 QKEILGRGCVMDRVSYNTLISGC 539



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/293 (21%), Positives = 121/293 (41%), Gaps = 46/293 (15%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L   G++ E   + +++  +G + MD+V +    + C  +K + EAF F     K    P
Sbjct: 504 LCEAGKLDEAFRIQKEILGRGCV-MDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKP 562

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----- 145
              T+++L+    +    E A Q     +  G+  D   Y+ +I  C K+ + +      
Sbjct: 563 DNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFF 622

Query: 146 ---MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHP--------------- 186
              M +NV+P+ VV+N LI A  +SG +  A ++  +M  + + P               
Sbjct: 623 DEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSII 682

Query: 187 -----------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
                            ++P+     AL+      GQ+ +   + + +H  N+      Y
Sbjct: 683 SRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITY 742

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           T+ I   ++ G+   A  + ++M +KG++PD +     I      G V  AF+
Sbjct: 743 TVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 795


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 97/436 (22%), Positives = 192/436 (44%), Gaps = 54/436 (12%)

Query: 24  DVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D    + +YN +I      GR++E   + ++ME  GL       +     +CK+ + ++E
Sbjct: 380 DAKPNISTYNIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQ-LEE 438

Query: 80  AFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A R F+       NP   T+  L+         + A+++   + +AG  A+  +YT+LI 
Sbjct: 439 AHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIR 498

Query: 136 T----------------------------------CA-KSGKVD---AMFENVK-----P 152
                                              C  K+G+V+   A+FE++K     P
Sbjct: 499 NFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLP 558

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D   ++ LI    ++G      ++   M+ +   +D       A++     +G+VD+A E
Sbjct: 559 DVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDAR--AYNAVVDGLCKSGKVDKAYE 616

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           V + +   ++  T   Y   ++  ++    + A  ++++   KG+  + +  S+LID  G
Sbjct: 617 VLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFG 676

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
             G+++ A+ IL+E   +G++  + +++SLM A    +   +AL  ++ MK +K  P   
Sbjct: 677 KVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTY 736

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T + LI  LC   +  K      +M+  GL PN +TY+ ++    +  ++     L  + 
Sbjct: 737 TYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERF 796

Query: 393 KEDGVIPNLVMFKCII 408
           K +G IP+   F  +I
Sbjct: 797 KTNGGIPDSASFNALI 812



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/486 (21%), Positives = 213/486 (43%), Gaps = 41/486 (8%)

Query: 75  KAIKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           + +++AFR       L   P  S + +L+   A ++  E A ++LR +Q+ G +    L+
Sbjct: 155 RRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGYEVSVPLF 214

Query: 131 TTLITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
           TTL+   A+ G+++   A+ + VK     PD V++N  I   G++G+VD A+    E+ A
Sbjct: 215 TTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKA 274

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
             H + PD ++  +++     AG++  A E++  +           Y   I        +
Sbjct: 275 --HGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERF 332

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA---FEILQEAKNQGISVGIISY 299
           + A  + + + ++G IP  V  ++++   G   KV+ A   F+++++     IS    +Y
Sbjct: 333 DDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKPNIS----TY 388

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           + ++     A    +A ++ + M+   L P + ++N ++  LC  +QL +   +      
Sbjct: 389 NIIIDMLCMAGRVNEAYKIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASE 448

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRYE 416
            G  PN++TY  L+    +K  ++    L  +  + G   N +++  +I    M  R+ +
Sbjct: 449 RGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKED 508

Query: 417 KARTLNEHVLSFNSGRPQIE--NKWTSLAL---------MVYREAIVAGTIPTVEVVSKV 465
             +   E +     GRP +   N +               ++ +    G +P V   S +
Sbjct: 509 GHKIYKEMIR--RGGRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSIL 566

Query: 466 LGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFG 522
           +  L     A     + + +     AL      +++DG    G+ D +A+ +LEE     
Sbjct: 567 IHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVD-KAYEVLEEMKVKH 625

Query: 523 IVPCVS 528
           + P V+
Sbjct: 626 VHPTVA 631



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 145/349 (41%), Gaps = 28/349 (8%)

Query: 159 ALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAREVYKMI 217
           AL+    +S  ++ AF V+  M    H    P       L+ A A A Q +RA E+ + +
Sbjct: 146 ALVATLVRSRRLEDAFRVIGAMR---HLKFRPPFSAYTVLIGALAEARQPERALELLRQM 202

Query: 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 277
                + +  ++T  +   ++ G  E A ++ D++    + PD V  +  ID  G AG V
Sbjct: 203 QDVGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSV 262

Query: 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
           + A++   E K  G+    +SY+S++     A    +A EL+  M++ +  P     N +
Sbjct: 263 DMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTM 322

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           I      ++     ++L  ++  G  P+ ++++ +L    +K  V+  L L    K+D  
Sbjct: 323 IMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAK 382

Query: 398 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 457
            PN+  +  II M       A  +NE                   A  +  E  +AG  P
Sbjct: 383 -PNISTYNIIIDMLC----MAGRVNE-------------------AYKIRDEMELAGLFP 418

Query: 458 TVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 506
            +  V+ ++  L      +   R+ E+             CSLIDG G+
Sbjct: 419 NLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGK 467



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/404 (22%), Positives = 177/404 (43%), Gaps = 39/404 (9%)

Query: 17  KHANYAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKG------LLD--MDKVYH 64
           K  +  HD +  +  Y  LIR     GR  +   + ++M R+G      LL+  MD V+ 
Sbjct: 480 KMLDAGHDANPII--YTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFK 537

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           A      +  +AI E  + F  +P+  + ++++L+     +  +     + + + + G  
Sbjct: 538 A---GEVEKGRAIFEDMKSFGFLPD--VRSYSILIHGLTKAGQARETSNIFQAMSQQGFA 592

Query: 125 ADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDV 176
            D + Y  ++    KSGKVD  +E        +V P    + +++    +   +D A+ +
Sbjct: 593 LDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYML 652

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTI--AI 233
             E  A+   ++ + I   +L+      G++D   E Y ++ +   KG TP VYT    +
Sbjct: 653 FEE--AKSKGIELNVILYSSLIDGFGKVGRID---EAYLILEEMMKKGLTPNVYTWNSLM 707

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           +   +T + + A   +  M +    P+    S LI+      K   AF   QE + QG+ 
Sbjct: 708 DALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLI 767

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
             +++Y++++   +   N   A  L+E  K+    P  ++ NALI  + + ++  +  +V
Sbjct: 768 PNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQV 827

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVE----VGLMLLSQAK 393
             + +  G   N  T   LL A  + + +E    VG +L   AK
Sbjct: 828 FEETRLRGCRLNVKTCISLLDALNKTECLEQAAIVGAVLSEIAK 871



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/144 (20%), Positives = 70/144 (48%)

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           +AL+     + ++E AF ++   ++        +Y+ L+GA + A+  ++ALEL   M+ 
Sbjct: 145 AALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQD 204

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
           +  + +V     L+ AL    Q+   + ++ ++K   L P+ + Y++ +    +   V++
Sbjct: 205 VGYEVSVPLFTTLVRALAREGQMEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDM 264

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII 408
                 + K  G+ P+ V +  ++
Sbjct: 265 AWKFFHELKAHGLRPDDVSYTSMV 288


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 176/384 (45%), Gaps = 21/384 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           PTL +FN++++          A  ++  ++  G+ A+   Y TLI    K GK+  M+  
Sbjct: 161 PTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKA 220

Query: 148 ---------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                    + + P+ V FN LI    +   V  A  V AEMN +   V P+ +T  +L+
Sbjct: 221 DAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQ--GVKPNVVTYNSLI 278

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
               N G+V+ A  +   +    +K     +   +N   +    + A  ++DDM K+G+ 
Sbjct: 279 NGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGIT 338

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+    + LID       +E AF + +    +G+   + +Y+ L+       + + A  L
Sbjct: 339 PNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNL 398

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
              M +  LK  + T N LI +LC+  ++ K + +L +M   GL P+ +TY+ ++    +
Sbjct: 399 VSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCK 458

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIE 436
           + ++   L L SQ ++ G + N+  +  +I G C + + E A  L   +L     +  I 
Sbjct: 459 EGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLE----KGLIP 514

Query: 437 NKWTSLALMVYREAIVAGTIPTVE 460
           N+ T    +V  E +  G +P +E
Sbjct: 515 NRMT--YEIVTEEMMEKGFVPDIE 536



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 167/383 (43%), Gaps = 39/383 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--------AIKEAFRFF 84
           N L + G++++  D++EDM+ +G+      Y+      CK  K        AI +  R  
Sbjct: 171 NGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRAD 230

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
            + PN    TFN+L+      K+   A +V   +   G+K                    
Sbjct: 231 GICPNEV--TFNILIDGFCKDKNVSAAMKVFAEMNRQGVK-------------------- 268

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                  P+ V +N+LI     +G V+ A  +  +M      + P+ IT  AL+      
Sbjct: 269 -------PNVVTYNSLINGLCNNGKVNEATALRDQMVNSC--LKPNIITHNALLNGFCKN 319

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
             V +A E++  + K  I      Y I I+   +  + E A ++Y  M  KGV PD    
Sbjct: 320 KMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTY 379

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + LI      G +EAA  ++ E   + +   +I+Y+ L+ +  N    +KAL L + M  
Sbjct: 380 NCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCR 439

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             LKP+  T N +I   C    L   + + S M+ +G   N  TY++L+    +KD +E 
Sbjct: 440 KGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLED 499

Query: 385 GLMLLSQAKEDGVIPNLVMFKCI 407
              LL++  E G+IPN + ++ +
Sbjct: 500 ANGLLNEMLEKGLIPNRMTYEIV 522



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 142/322 (44%), Gaps = 46/322 (14%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--------FENVKPDRVVFNALIT 162
            F+  +   + GLK        L++   K G++  M           ++P  + FN +I 
Sbjct: 112 GFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVIN 171

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
              + G +++A D++ +M  +V  V  + IT   L+      G++ +   +YK       
Sbjct: 172 GLCKVGKLNKAGDIIEDM--KVRGVSANVITYNTLIDGYCKMGKIGK---MYK------- 219

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
                                 A ++  +M   G+ P+EV  + LID       V AA +
Sbjct: 220 ----------------------ADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMK 257

Query: 283 ILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           +  E   QG+   +++Y+SL+ G C+N K   +A  L + M +  LKP + T NAL+   
Sbjct: 258 VFAEMNRQGVKPNVVTYNSLINGLCNNGK-VNEATALRDQMVNSCLKPNIITHNALLNGF 316

Query: 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
           C    + +  E+  DM   G+ PN  TY+IL+ A  + +++E    L       GV P++
Sbjct: 317 CKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDV 376

Query: 402 VMFKCII-GMCSR-RYEKARTL 421
             + C+I G+C +   E AR L
Sbjct: 377 STYNCLIAGLCRKGDLEAARNL 398


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 179/395 (45%), Gaps = 16/395 (4%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
           + +S    S N ++ +  + E + L +++  K     + +  A    +C + + IK+A +
Sbjct: 220 YGISPSPESCNAVLCRLPLDEAVQLFQELPEKNTCSYNILLKA----LCTAGR-IKDAHQ 274

Query: 83  FF-KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            F ++   P + T+ +++    +  + E A ++L  +   GL+ +   YT++I      G
Sbjct: 275 LFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEG 334

Query: 142 KV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +V        D +   V  D  VF  +++   + G +  A +   EM  +   +  D +T
Sbjct: 335 QVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEM--QKRGLAADGVT 392

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+     AG++  A  V + +    +      YT+ I+   + G    A  V++ M 
Sbjct: 393 YTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMV 452

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +K V P+ V  +AL D     G V AA E+L E  ++G+ + I +Y+SL+     A N +
Sbjct: 453 QKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLE 512

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A+     M    LKP V T   +I ALC   +L +   +L +M   G+ P  +TY++L+
Sbjct: 513 QAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLM 572

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                   VE G  LL    E  + PN   +  ++
Sbjct: 573 NGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLM 607



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 181/431 (41%), Gaps = 21/431 (4%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LV 87
           +H Y  L     +   I LL +M  +GL +++ V +     +   +  + +A R  + +V
Sbjct: 292 VHGYCTL---SELETAIKLLSEMAARGL-ELNPVAYTSVIALLCDEGQVSDAVRVVEDMV 347

Query: 88  PNPTL---STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV- 143
            +  +   + F  +MS      D   A      +Q+ GL AD   YT LI    ++G++ 
Sbjct: 348 MHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELK 407

Query: 144 -------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                  +   + +  D V +  LI    + G +  AF V  +M  +   V P+ +T  A
Sbjct: 408 EAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKR--VTPNVVTYTA 465

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L       G V  A E+   +    ++     Y   IN   + G+ E A     DM + G
Sbjct: 466 LSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAG 525

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD    + +I     + +++ A  +LQE  ++GI   I++Y+ LM     +   +   
Sbjct: 526 LKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGK 585

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            L E M    + P  +T N+L+   C    +  T E+   M S  + PN  TY+IL+   
Sbjct: 586 RLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGH 645

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFN-SGRP 433
            +  +++  L   S+  E G       +  +I + +  +++ +AR L E +     +  P
Sbjct: 646 CKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEP 705

Query: 434 QIENKWTSLAL 444
            + N +  L+ 
Sbjct: 706 DVYNFYIDLSF 716



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 167/407 (41%), Gaps = 50/407 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L  +G++S+ + ++EDM   G++    V+       C+ +  +  A  +F  +    L+ 
Sbjct: 330 LCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCR-KGDLAAARNWFDEMQKRGLAA 388

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
              T+  L++    + + + A +VL+ +++ GL  D   YT LI    K GK+   F   
Sbjct: 389 DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVH 448

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                + V P+ V + AL     + G V  A ++L EM ++   ++ +  T  +L+    
Sbjct: 449 NKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSK--GLELNIFTYNSLINGLC 506

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AG +++A      + +  +K     YT  I    Q+ + + A S+  +M  KG+ P  V
Sbjct: 507 KAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIV 566

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L++    +G+VE    +L+    + I     +Y+SLM      KN +   E+Y+ M
Sbjct: 567 TYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGM 626

Query: 323 KSIKLKP-----------------------------------TVSTMNALITALCDGDQL 347
            S ++ P                                   T S+ NALI  L    + 
Sbjct: 627 LSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKF 686

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            +   +   M+   L      Y+  +     +D++E  L L  +  E
Sbjct: 687 TEARRLFEKMRKDRLTAEPDVYNFYIDLSFNEDNLESTLALCDELVE 733



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 146/381 (38%), Gaps = 93/381 (24%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFF------K 85
           N L R G + E   +L++ME KGL D+D V +    +  CK  K + EAF         +
Sbjct: 398 NGLCRAGELKEAERVLQEMEDKGL-DVDAVTYTVLIDGYCKVGK-MTEAFLVHNKMVQKR 455

Query: 86  LVPNPT---------------------------------LSTFNMLMSVCASSKDSEGAF 112
           + PN                                   + T+N L++    + + E A 
Sbjct: 456 VTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAM 515

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--------AMFENVKPDRVVFNALITAC 164
           + +  + EAGLK D   YTT+I    +S ++D         + + +KP  V +N L+   
Sbjct: 516 RTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575

Query: 165 GQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
             SG V+   R  + + E N     + P+  T  +LMK               +   + N
Sbjct: 576 CMSGRVEGGKRLLEWMLEKN-----IHPNTTTYNSLMK---------------QYCIEKN 615

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           +K T E                    +Y  M  + V+P+E   + LI     A  ++ A 
Sbjct: 616 MKSTTE--------------------IYKGMLSQEVVPNENTYNILIKGHCKARNMKEAL 655

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
               E   +G  +   SY++L+   +  K + +A  L+E M+  +L       N  I   
Sbjct: 656 YFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKDRLTAEPDVYNFYIDLS 715

Query: 342 CDGDQLPKTMEVLSDMKSLGL 362
            + D L  T+ +  ++  + L
Sbjct: 716 FNEDNLESTLALCDELVEVTL 736


>gi|42570403|ref|NP_850357.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330254930|gb|AEC10024.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 683

 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 183/396 (46%), Gaps = 21/396 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G   E +++ + M   G+   D V H    +  KS +   +A  +F+L
Sbjct: 83  TYNNLINACGSSGNWREALEVCKKMTDNGV-GPDLVTHNIVLSAYKSGRQYSKALSYFEL 141

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQE--AGLKADCKLYTTLITTCAKS 140
           +      P  +TFN+++   +    S  A  +   ++E  A  + D   +T+++   +  
Sbjct: 142 MKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVK 201

Query: 141 GKVD---AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+++   A+FE      +KP+ V +NAL+ A    G    A  VL ++    + + PD +
Sbjct: 202 GEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ--NGIIPDVV 259

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +   L+ +   + Q  +A+EV+ M+ K   K     Y   I+     G    A  ++  M
Sbjct: 260 SYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQM 319

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            + G+ P+ V +  L+     + K      +L  A+++GI++   +Y+S +G+  NA   
Sbjct: 320 EQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAEL 379

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +KA+ LY+ M+  K+K    T   LI+  C   + P+ +  L +M+ L +      YS +
Sbjct: 380 EKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSV 439

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L A  ++  V     + +Q K  G  P+++ +  ++
Sbjct: 440 LCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSML 475



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 156/355 (43%), Gaps = 51/355 (14%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDA 145
           P+ ST+N L++ C SS +   A +V + + + G+  D   +  ++ +  KSG    K  +
Sbjct: 79  PSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTH-NIVLSAYKSGRQYSKALS 137

Query: 146 MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            FE      V+PD   FN +I    + G   +A D+   M  +     PD +T  ++M  
Sbjct: 138 YFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIM-- 195

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                            H Y++KG  E      NC           +V++ M  +G+ P+
Sbjct: 196 -----------------HLYSVKGEIE------NC----------RAVFEAMVAEGLKPN 222

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  +AL+      G    A  +L + K  GI   ++SY+ L+ +   ++   KA E++ 
Sbjct: 223 IVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFL 282

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-K 379
            M+  + KP V T NALI A      L + +E+   M+  G+ PN ++   LL AC R K
Sbjct: 283 MMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSK 342

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 434
             V V   +LS A+  G+  N   +   IG     Y  A  L + +  + S R +
Sbjct: 343 KKVNVD-TVLSAAQSRGINLNTAAYNSAIG----SYINAAELEKAIALYQSMRKK 392



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 158/358 (44%), Gaps = 23/358 (6%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAM 146
           +NM++ + A     + A  +   +Q+   K D + Y  LI    ++G+         D +
Sbjct: 14  YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDML 73

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              + P R  +N LI ACG SG    A +V  +M    + V PD +T   ++ A  +  Q
Sbjct: 74  RAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTD--NGVGPDLVTHNIVLSAYKSGRQ 131

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV--IPDEVFL 264
             +A   ++++    ++     + I I C S+ G    A  +++ M +K     PD V  
Sbjct: 132 YSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTF 191

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++++      G++E    + +    +G+   I+SY++LMGA +       AL +   +K 
Sbjct: 192 TSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ 251

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             + P V +   L+ +     Q  K  EV   M+     PN +TY+ L+ A      +  
Sbjct: 252 NGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAE 311

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK-----------ARTLNEHVLSFNSG 431
            + +  Q ++DG+ PN+V    ++  CSR  +K           +R +N +  ++NS 
Sbjct: 312 AVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSA 369



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/397 (19%), Positives = 162/397 (40%), Gaps = 18/397 (4%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           L+SY R  + G+  E   ++    RK     + V +    +   S   + EA   F+ + 
Sbjct: 265 LNSYGRSRQPGKAKEVFLMMRKERRKP----NVVTYNALIDAYGSNGFLAEAVEIFRQME 320

Query: 89  N----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P + +   L++ C+ SK       VL   Q  G+  +   Y + I +   + +++
Sbjct: 321 QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELE 380

Query: 145 ---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
              A++++     VK D V F  LI+   +      A   L EM     P+  +     +
Sbjct: 381 KAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKE--VYSS 438

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ A +  GQV  A  ++  +     +     YT  ++  + +  W  AC ++ +M   G
Sbjct: 439 VLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANG 498

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD +  SAL+      G+    F ++   + + I      +  +  AC+  + W++A+
Sbjct: 499 IEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAI 558

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +L + M       ++   N ++       ++   M++   + + G+  N  TY+ILL   
Sbjct: 559 DLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHL 618

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
               +    + +L      G+ P+  M++ II    R
Sbjct: 619 LAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGER 655



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 111/260 (42%), Gaps = 4/260 (1%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           ++N +I    +   VD+A  +  EM  +     PD  T  AL+ A   AGQ   A  +  
Sbjct: 13  IYNMMIRLHARHNWVDQARGLFFEM--QKWSCKPDAETYDALINAHGRAGQWRWAMNLMD 70

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            + +  I  +   Y   IN C  +G+W  A  V   MT  GV PD V  + ++       
Sbjct: 71  DMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGR 130

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM--KSIKLKPTVST 333
           +   A    +  K   +     +++ ++   S      +AL+L+  M  K  + +P V T
Sbjct: 131 QYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVT 190

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
             +++       ++     V   M + GL PN ++Y+ L+ A          L +L   K
Sbjct: 191 FTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIK 250

Query: 394 EDGVIPNLVMFKCIIGMCSR 413
           ++G+IP++V + C++    R
Sbjct: 251 QNGIIPDVVSYTCLLNSYGR 270



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 92/192 (47%), Gaps = 2/192 (1%)

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           ++Y + I   ++    + A  ++ +M K    PD     ALI+  G AG+   A  ++ +
Sbjct: 12  DIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDD 71

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
                I+    +Y++L+ AC ++ NW++ALE+ + M    + P + T N +++A   G Q
Sbjct: 72  MLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQ 131

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV--IPNLVMF 404
             K +     MK   + P+T T++I++    +       L L +  +E      P++V F
Sbjct: 132 YSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTF 191

Query: 405 KCIIGMCSRRYE 416
             I+ + S + E
Sbjct: 192 TSIMHLYSVKGE 203


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 193/420 (45%), Gaps = 33/420 (7%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI------KEA 80
           +YN +IR      R+ E I+LLEDM  KG L     Y+     +CK ++ +      K+ 
Sbjct: 314 TYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKM 373

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +   LVP+    T+N L+ +      ++ A   L+  QE G + D   Y+ ++    K 
Sbjct: 374 AKEHGLVPDQV--TYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKE 431

Query: 141 GK-------VDAMFE--NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           G+       ++ M    +  PD V + A++    + G VD+A  +L  M+   H   P+ 
Sbjct: 432 GRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHK--PNT 489

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           ++  AL+      G+   ARE+  M  ++        Y++ ++   + G    AC V  +
Sbjct: 490 VSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVRE 549

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK 310
           M  KG  P  V ++ L+      G+   A + ++E  N+G ++ ++++++++ G C N +
Sbjct: 550 MVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDE 609

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY- 369
               AL + + M  I     V T   L+  L    ++ +  E++  M   G+ P  +TY 
Sbjct: 610 -LDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYR 668

Query: 370 SILLVACE--RKDDVEVGLMLLSQAKEDGVIPNLVMFK-CIIGMCSRRYEKARTLNEHVL 426
           +++   C+  + DD+   L  +   ++   I N V+ K C++G    + E+A TL   VL
Sbjct: 669 TVIHRYCQMGKVDDLVAILEKMISRQKCRTIYNQVIEKLCVLG----KLEEADTLLGKVL 724



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 107/221 (48%), Gaps = 7/221 (3%)

Query: 199 KACANAGQVDRAREVYKMIH----KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           + CA     D  R   K  +    ++  +  P VY   +   S+T   + +  V   M +
Sbjct: 176 QVCAVLRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKR 235

Query: 255 KGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +G+    E F   ++ ++  AG++  A ++L   +  G+   ++  ++ +     A   +
Sbjct: 236 RGIYRTPEAFSRVMVSYS-RAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLE 294

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSIL 372
           KAL   E M+ + + P V T N +I   CD  ++ + +E+L DM S G  P+ ++ Y+I+
Sbjct: 295 KALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIM 354

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
              C+ K  VEV  ++   AKE G++P+ V +  +I M ++
Sbjct: 355 GYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTK 395



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 93/480 (19%), Positives = 206/480 (42%), Gaps = 72/480 (15%)

Query: 70  VCKSQKAIKEAFRFF-------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
           V +SQ   + A +FF       +   +P +  +  ++ V + +K  +G+ +VL L++  G
Sbjct: 180 VLRSQDDERVALKFFYWADRQWRYRHDPMV--YYSMLEVLSKTKLCQGSRRVLVLMKRRG 237

Query: 123 LKADCKLYTTLITTCAKSGKV-DAM-------FENVKPDRVVFNALITACGQSGAVDRAF 174
           +    + ++ ++ + +++G++ DA+          V+P+ ++ N  I    ++  +++A 
Sbjct: 238 IYRTPEAFSRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKAL 297

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
             L  M  +V  + P+ +T   +++   +  +V+ A E+                     
Sbjct: 298 RFLERM--QVVGIVPNVVTYNCMIRGYCDLHRVEEAIELL-------------------- 335

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGIS 293
                          +DM  KG +PD+V    ++ +     ++    +++++ AK  G+ 
Sbjct: 336 ---------------EDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLV 380

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
              ++Y++L+   +   +  +AL   +  +    +      +A++ ALC   ++ +  ++
Sbjct: 381 PDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDL 440

Query: 354 LSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           +++M S G C P+ +TY+ ++    R  +V+    LL      G  PN V +  ++ GMC
Sbjct: 441 INEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMC 500

Query: 412 --SRRYEKARTLN---EHVLSFNSGRPQI-------ENKWTSLALMVYREAIVAGTIPTV 459
              +  E    +N   EH  S NS    +       E K +  A  V RE ++ G  P  
Sbjct: 501 RTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSE-ACDVVREMVLKGFFPGP 559

Query: 460 EVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEE 517
             ++ +L  L          + +E       A+   N  ++I GF + D    A S+L++
Sbjct: 560 VEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDD 619


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 114/484 (23%), Positives = 191/484 (39%), Gaps = 77/484 (15%)

Query: 18  HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR----------- 66
           ++++A +  E  +   +++R G + E    LE+M          VYH             
Sbjct: 95  NSSFALEDVESNNHLRQMVRTGELEEGFKFLENM----------VYHGNVPDIIPCTTLI 144

Query: 67  --FFNVCKSQKAIK--EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
             F  + K++KA K  E       VP+  + T+N+++S    + +   A  VL       
Sbjct: 145 RGFCRLGKTRKAAKILEILEGSGAVPD--VITYNVMISGYCKAGEINNALSVL---DRMS 199

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAF 174
           +  D   Y T++ +   SGK+    E        +  PD + +  LI A  +   V  A 
Sbjct: 200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
            +L EM        PD +T   L+      G++D A +    +     +     + I + 
Sbjct: 260 KLLDEMRD--RGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
               TG W  A  +  DM +KG  P  V  + LI+F    G +  A +IL++    G   
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
             +SY+ L+      K   +A+E  E M S    P + T N ++TALC   ++   +E+L
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437

Query: 355 SDMKSLG-----------------------------------LCPNTITYSILLVACERK 379
           + + S G                                   L P+TITYS L+    R+
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCI-IGMCSRRYEKARTLNEHVLSFNSGRPQIENK 438
             V+  +    + +  G+ PN V F  I +G+C  R +  R ++  V   N G    E  
Sbjct: 498 GKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSR-QTDRAIDFLVFMINRGCKPNETS 556

Query: 439 WTSL 442
           +T L
Sbjct: 557 YTIL 560



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 175/416 (42%), Gaps = 47/416 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN 96
           R G+  +   +LE +E  G +     Y+      CK+ +         ++  +P + T+N
Sbjct: 149 RLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYN 208

Query: 97  -MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-TTCAKSGKVDAMF------- 147
            +L S+C S K  + A +VL  + +     D   YT LI  TC  SG   AM        
Sbjct: 209 TILRSLCDSGKLKQ-AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRD 267

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM-------NAEVHPV------------- 187
               PD V +N L+    + G +D A   L +M       N   H +             
Sbjct: 268 RGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMD 327

Query: 188 -------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
                         P  +T   L+      G + RA ++ + + ++  +     Y   ++
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLH 387

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
              +    + A    + M  +G  PD V  + ++      GKVE A EIL +  ++G S 
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP 447

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
            +I+Y++++   + A    KA++L + M++  LKP   T ++L+  L    ++ + ++  
Sbjct: 448 VLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFF 507

Query: 355 SDMKSLGLCPNTITY-SILLVACE-RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            + + +G+ PN +T+ SI+L  C+ R+ D  +  ++    +  G  PN   +  +I
Sbjct: 508 HEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINR--GCKPNETSYTILI 561


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 129/557 (23%), Positives = 235/557 (42%), Gaps = 55/557 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G + + + L ++M ++G+L     Y      +C+S++ + +A+R F  + +    P
Sbjct: 206 LCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKR-VDDAYRLFDKMKDSGVGP 264

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD------ 144
              T N L++        + AF +LRL ++ G   D + Y+ LI    ++ + +      
Sbjct: 265 DFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLY 324

Query: 145 -AMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
             M E NVKPD  ++  ++    ++G V  A ++L EM      V PD +    L+K   
Sbjct: 325 RKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTES--GVVPDTVCYNVLIKGFC 382

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           + G +  AR +   I +++     + Y+I I+   + G    A  ++++M K G  P  V
Sbjct: 383 DMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAV 442

Query: 263 FLSALIDFAGHAGKVEAA---FEILQEAKN--------QGIS--VGIISYSSLMGACSNA 309
             ++LID     G++E A   F  ++  +N        QG S  +   S   ++    ++
Sbjct: 443 TFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDS 502

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
               KA  +   +      P + T N L+   C         ++  +M+  GL P+T+TY
Sbjct: 503 GLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTY 562

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFN 429
             L+    R    E    +  Q +++G  P+  +++ ++    RR E  R  +  +    
Sbjct: 563 GTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLR 622

Query: 430 SGRPQIENKWTSLALMVYREAI--VAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 487
           + R Q +            EAI  + G     EV   V G L++ +        + +  +
Sbjct: 623 NIRSQED------------EAIKAIEGYFEKQEVEKAVRGLLEMDFK-------LNDFDL 663

Query: 488 SADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAK 547
              A+    LC      GE   + F +LEE       PC   K I  ++    L+     
Sbjct: 664 GPYAIWLIGLCQ-TRRVGE-ALKIFLILEEYKVVITPPC-CVKLIYFLLKEGDLD-RAID 719

Query: 548 VYLLTILKG--LRHRLA 562
           V+L TI KG  LR R+A
Sbjct: 720 VFLYTIEKGYLLRRRVA 736



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 130/286 (45%), Gaps = 12/286 (4%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R  KL   P ++TF++L+     S + + A  +   + + G+  D   Y  +I+   +S 
Sbjct: 186 RMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSK 245

Query: 142 KVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +VD    +F+ +K     PD V  NAL+        VD AF +L     + + +D    +
Sbjct: 246 RVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYS 305

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L++    A + +  + +Y+ + + N+K    +YTI +   ++ G    A  + ++MT
Sbjct: 306 --CLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMT 363

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNW 312
           + GV+PD V  + LI      G +  A  +  E         + +YS L+ G C N    
Sbjct: 364 ESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLT- 422

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           + A E++  M+ +   P+  T N+LI  LC   QL K   +   M+
Sbjct: 423 RDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKME 468



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 146/346 (42%), Gaps = 17/346 (4%)

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            FRFF    N        + +++  +  +    E   Q L  ++  G+K     +  LI 
Sbjct: 75  GFRFFIWASNFKRFRAWESCDLITDLLINQNGLELYCQTLEALKNGGIKVHNDAFFVLIK 134

Query: 136 TCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K G  D   E        +  PD   +N ++    Q   +  A  V   M  +++ +
Sbjct: 135 VYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRM-MKLNCL 193

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P+  T   L+     +G V  A  ++  + +  I      Y + I+   ++   + A  
Sbjct: 194 -PNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYR 252

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           ++D M   GV PD V  +AL++      +V+ AF +L+  +  G  + +  YS L+    
Sbjct: 253 LFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLF 312

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            AK ++    LY  M    +KP V     ++  L +  ++   +E+L++M   G+ P+T+
Sbjct: 313 RAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTV 372

Query: 368 TYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            Y++L+   C+     E   + L  ++ D   PN+  +  +I GMC
Sbjct: 373 CYNVLIKGFCDMGLLSEARSLQLEISRHD-CFPNVKTYSILISGMC 417


>gi|299469706|emb|CBN76560.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 915

 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 145/325 (44%), Gaps = 18/325 (5%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQE---AGLKADCKLYTTLITTCAKSGK--------VDAM 146
           + S  A  K +    + L L+QE    G   + + Y + IT CA++           D  
Sbjct: 330 IASAVADPKPTRAHEKALELIQEMRREGPSPNSQCYASAITACARAHDPRSAMRLLADMR 389

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
            + V P+ VV NA + ACG+  A D A  +L  M  + + V P+ +T  + +   + AG 
Sbjct: 390 EDGVPPNDVVLNAAVDACGKGDAPDEALKLLRGME-KAYGVKPNTVTFNSAISGLSRAG- 447

Query: 207 VDRAREVYKMIHKYNIKG-TPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             RARE   ++++ + +G  P+ ++   A+   +  GD     S+ D+M  +G+  D V 
Sbjct: 448 --RAREAKALLNEMSERGLKPDNFSFNAAMQGFAAAGDPRNTASLSDEMKSRGIGMDVVS 505

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
               +     AG V+ A ++L+E +  G+    + Y+S + AC  A   + A +L   M 
Sbjct: 506 YGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSALDACGRAGKPKVAEKLLRKMG 565

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              +    ++    I A        K +E L  M   G+ P  ITY+  + AC R  +  
Sbjct: 566 ETGVVRDATSYTGAIVACSRNGDGDKALEWLETMSKEGIAPEAITYNYAMAACGRSGNDR 625

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
               LL++ +  GV PN + +   +
Sbjct: 626 QAEWLLNEMRGQGVTPNRISYSAAM 650



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 147/334 (44%), Gaps = 11/334 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P+P    +   ++ CA + D   A ++L  ++E G+  +  +    +  C K    D   
Sbjct: 358 PSPNSQCYASAITACARAHDPRSAMRLLADMREDGVPPNDVVLNAAVDACGKGDAPDEAL 417

Query: 148 E---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
           +          VKP+ V FN+ I+   ++G    A  +L EM+     + PD+ +  A M
Sbjct: 418 KLLRGMEKAYGVKPNTVTFNSAISGLSRAGRAREAKALLNEMSE--RGLKPDNFSFNAAM 475

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           +  A AG       +   +    I      Y  A++ C++ GD + A  +  +M + GV 
Sbjct: 476 QGFAAAGDPRNTASLSDEMKSRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQEAGVE 535

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+ V  ++ +D  G AGK + A ++L++    G+     SY+  + ACS   +  KALE 
Sbjct: 536 PNTVVYNSALDACGRAGKPKVAEKLLRKMGETGVVRDATSYTGAIVACSRNGDGDKALEW 595

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            E M    + P   T N  + A        +   +L++M+  G+ PN I+YS  + A  +
Sbjct: 596 LETMSKEGIAPEAITYNYAMAACGRSGNDRQAEWLLNEMRGQGVTPNRISYSAAMFALGK 655

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
              +   L LL +   +GV  + V +   +   S
Sbjct: 656 AGRLPDVLSLLEEMHREGVEADEVTYHIAVDAAS 689



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 128/268 (47%), Gaps = 5/268 (1%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           E   P+   + + ITAC ++     A  +LA+M  +  P  P+ + + A + AC      
Sbjct: 356 EGPSPNSQCYASAITACARAHDPRSAMRLLADMREDGVP--PNDVVLNAAVDACGKGDAP 413

Query: 208 DRAREVYKMIHK-YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           D A ++ + + K Y +K     +  AI+  S+ G    A ++ ++M+++G+ PD    +A
Sbjct: 414 DEALKLLRGMEKAYGVKPNTVTFNSAISGLSRAGRAREAKALLNEMSERGLKPDNFSFNA 473

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
            +     AG       +  E K++GI + ++SY + + AC+ A + + AL+L + M+   
Sbjct: 474 AMQGFAAAGDPRNTASLSDEMKSRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQEAG 533

Query: 327 LKPTVSTMNALITALCDGDQLPKTME-VLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           ++P     N+ + A C     PK  E +L  M   G+  +  +Y+  +VAC R  D +  
Sbjct: 534 VEPNTVVYNSALDA-CGRAGKPKVAEKLLRKMGETGVVRDATSYTGAIVACSRNGDGDKA 592

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           L  L    ++G+ P  + +   +  C R
Sbjct: 593 LEWLETMSKEGIAPEAITYNYAMAACGR 620



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 162/369 (43%), Gaps = 18/369 (4%)

Query: 43  ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-----KLVPNPTLSTFNM 97
           + ++L+++M R+G     + Y A     C      + A R         VP P     N 
Sbjct: 345 KALELIQEMRREGPSPNSQCY-ASAITACARAHDPRSAMRLLADMREDGVP-PNDVVLNA 402

Query: 98  LMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGK-------VDAMFE- 148
            +  C      + A ++LR +++A G+K +   + + I+  +++G+       ++ M E 
Sbjct: 403 AVDACGKGDAPDEALKLLRGMEKAYGVKPNTVTFNSAISGLSRAGRAREAKALLNEMSER 462

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            +KPD   FNA +     +G       +  EM +    +  D ++ G  + ACA AG V 
Sbjct: 463 GLKPDNFSFNAAMQGFAAAGDPRNTASLSDEMKS--RGIGMDVVSYGTAVSACAKAGDVK 520

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A ++ K + +  ++    VY  A++ C + G  + A  +   M + GV+ D    +  I
Sbjct: 521 GALKLLKEMQEAGVEPNTVVYNSALDACGRAGKPKVAEKLLRKMGETGVVRDATSYTGAI 580

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                 G  + A E L+    +GI+   I+Y+  M AC  + N ++A  L   M+   + 
Sbjct: 581 VACSRNGDGDKALEWLETMSKEGIAPEAITYNYAMAACGRSGNDRQAEWLLNEMRGQGVT 640

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P   + +A + AL    +LP  + +L +M   G+  + +TY I + A     D+   + L
Sbjct: 641 PNRISYSAAMFALGKAGRLPDVLSLLEEMHREGVEADEVTYHIAVDAASIARDLGCAMDL 700

Query: 389 LSQAKEDGV 397
             + +  G+
Sbjct: 701 FREMRARGL 709



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 153/360 (42%), Gaps = 58/360 (16%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAMFE----NVK 151
           A ++D EG  + L    E G K +  + T  IT   ++GK       +D M +    + +
Sbjct: 200 AKARDFEGMLEAL----EEGPK-NAIVCTVAITCLGQAGKWREAVEVLDGMGKGGDGSDR 254

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AGQVDR- 209
           PD   + A I ACG++G    A  +L EM      V PD +  G+ + A    AG  +R 
Sbjct: 255 PDAFAYAATINACGKAGRPVEAVALLTEM--PTRRVKPDVVCFGSAIFALGEVAGTQNRS 312

Query: 210 ---------------------------------AREVYKMIHKYNIKGTPEVYTIAINCC 236
                                            A E+ + + +       + Y  AI  C
Sbjct: 313 TWGRKGADEGGEGGDKPIASAVADPKPTRAHEKALELIQEMRREGPSPNSQCYASAITAC 372

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVG 295
           ++  D   A  +  DM + GV P++V L+A +D  G     + A ++L+   K  G+   
Sbjct: 373 ARAHDPRSAMRLLADMREDGVPPNDVVLNAAVDACGKGDAPDEALKLLRGMEKAYGVKPN 432

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL-CDGDQLPKTMEVL 354
            ++++S +   S A   ++A  L   M    LKP   + NA +      GD  P+    L
Sbjct: 433 TVTFNSAISGLSRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAAGD--PRNTASL 490

Query: 355 SD-MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           SD MKS G+  + ++Y   + AC +  DV+  L LL + +E GV PN V++   +  C R
Sbjct: 491 SDEMKSRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSALDACGR 550



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 130/304 (42%), Gaps = 42/304 (13%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L R GR  E   LL +M  +GL                                 P   +
Sbjct: 443 LSRAGRAREAKALLNEMSERGL--------------------------------KPDNFS 470

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------ 148
           FN  M   A++ D      +   ++  G+  D   Y T ++ CAK+G V    +      
Sbjct: 471 FNAAMQGFAAAGDPRNTASLSDEMKSRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQ 530

Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              V+P+ VV+N+ + ACG++G    A  +L +M  E   V       GA++ AC+  G 
Sbjct: 531 EAGVEPNTVVYNSALDACGRAGKPKVAEKLLRKMG-ETGVVRDATSYTGAIV-ACSRNGD 588

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            D+A E  + + K  I      Y  A+  C ++G+   A  + ++M  +GV P+ +  SA
Sbjct: 589 GDKALEWLETMSKEGIAPEAITYNYAMAACGRSGNDRQAEWLLNEMRGQGVTPNRISYSA 648

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
            +   G AG++     +L+E   +G+    ++Y   + A S A++   A++L+  M++  
Sbjct: 649 AMFALGKAGRLPDVLSLLEEMHREGVEADEVTYHIAVDAASIARDLGCAMDLFREMRARG 708

Query: 327 LKPT 330
           L  T
Sbjct: 709 LPVT 712



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 112/273 (41%), Gaps = 44/273 (16%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWE 243
           +DP  +  G ++   A   ++ +AR+   M+    ++  P+   V T+AI C  Q G W 
Sbjct: 181 LDPQTVEKGKML--AARIKELAKARDFEGMLEA--LEEGPKNAIVCTVAITCLGQAGKWR 236

Query: 244 FACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
            A  V D M K G     PD    +A I+  G AG+   A  +L E   + +   ++ + 
Sbjct: 237 EAVEVLDGMGKGGDGSDRPDAFAYAATINACGKAGRPVEAVALLTEMPTRRVKPDVVCFG 296

Query: 301 SLM------GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP-----K 349
           S +          N   W +  +  +       KP  S +          D  P     K
Sbjct: 297 SAIFALGEVAGTQNRSTWGR--KGADEGGEGGDKPIASAV---------ADPKPTRAHEK 345

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            +E++ +M+  G  PN+  Y+  + AC R  D    + LL+  +EDGV PN V+    + 
Sbjct: 346 ALELIQEMRREGPSPNSQCYASAITACARAHDPRSAMRLLADMREDGVPPNDVVLNAAVD 405

Query: 410 MCS------------RRYEKARTLNEHVLSFNS 430
            C             R  EKA  +  + ++FNS
Sbjct: 406 ACGKGDAPDEALKLLRGMEKAYGVKPNTVTFNS 438


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 191/438 (43%), Gaps = 23/438 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTL 92
           L  +GRI++ +++L++M  KG   +  +YH      C+S    + + R  + +     TL
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRS-GGFRNSVRVLEAMHAKGCTL 179

Query: 93  STFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TTCAKSGKVDAM 146
            T N   +L ++C      E A  +LR +   G +AD   Y  ++       + G V+ +
Sbjct: 180 DTGNCNLVLNAICEQGCVDE-AVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEEL 238

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            +     +  P+ V FN LI    ++G  +R  +VLA+M+   H   PD      ++   
Sbjct: 239 MDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE--HGCTPDIRMYATIIDGI 296

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G ++ A E+   +  Y +K     Y   +        W+ A  +  +M +K    D+
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L+DF    G V+   E+L++  + G    +I+Y++++          +A+ L + 
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S   KP   +   ++  LC   +     E++S M   G  PN +T++ L+    +K  
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNEHVLSFNSGRPQIENK 438
           VE  + LL Q   +G  P+L+ +  +I   G   +  E    LN  V   N G       
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMV---NKGISPNTII 533

Query: 439 WTSLALMVYREAIVAGTI 456
           ++S+A  + RE  V   I
Sbjct: 534 YSSIACALSREGRVNKVI 551



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 163/366 (44%), Gaps = 19/366 (5%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D +  + ++N LI    R G      ++L  M   G     ++Y      +CK +  ++ 
Sbjct: 246 DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICK-EGHLEV 304

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A      +P+    P +  +N ++    S++  + A ++L  + +     D   +  L+ 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 136 TCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              ++G VD + E ++        PD + +  +I    + G +D A  +L  M++     
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSS--CGC 422

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P+ ++   ++K   +AG+   A E+   + +      P  +   IN   + G  E A  
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +   M   G  PD +  S +ID  G AGK E A E+L    N+GIS   I YSS+  A S
Sbjct: 483 LLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALS 542

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                 K +++++++K   ++      NA+I++LC   +  + ++  + M S G  PN  
Sbjct: 543 REGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNES 602

Query: 368 TYSILL 373
           TY++L+
Sbjct: 603 TYTMLI 608



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 104/456 (22%), Positives = 176/456 (38%), Gaps = 83/456 (18%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAF-RFFKLVPN 89
           N +  QG + E + LL  +   G       Y+A    +C +++   ++E      ++   
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P + TFN L+     +   E   +VL  + E G   D ++Y T+I    K G ++     
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 146 --------------------------------------MFENVKP-DRVVFNALITACGQ 166
                                                 MF+   P D V FN L+    Q
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQ 368

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           +G VDR  ++L +M +  H   PD IT   ++      G +D A  + K +     K   
Sbjct: 369 NGLVDRVIELLEQMLS--HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNT 426

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             YTI +      G W  A  +   M ++G  P+ V  + LI+F    G VE A E+L++
Sbjct: 427 VSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               G S  +ISYS+++     A   ++ALEL                            
Sbjct: 487 MLVNGCSPDLISYSTVIDGLGKAGKTEEALEL---------------------------- 518

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
                  L+ M + G+ PNTI YS +  A  R+  V   + +    K+  +  + V++  
Sbjct: 519 -------LNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNA 571

Query: 407 IIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
           +I    +R+E  R ++      ++G    E+ +T L
Sbjct: 572 VISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTML 607



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 2/238 (0%)

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
           PV P+  T   +++     G++  A EV   +        P +Y + +    ++G +  +
Sbjct: 106 PVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNS 165

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             V + M  KG   D    + +++     G V+ A  +L++    G    I+SY++++  
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKG 225

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
              AK W    EL + M  +   P + T N LI  LC      +  EVL+ M   G  P+
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD 285

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 421
              Y+ ++    ++  +EV   +L++    G+ PN+V +  ++ G+CS  R+++A  L
Sbjct: 286 IRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEEL 343


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 191/438 (43%), Gaps = 23/438 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTL 92
           L  +GRI++ +++L++M  KG   +  +YH      C+S    + + R  + +     TL
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRS-GGFRNSVRVLEAMHAKGCTL 179

Query: 93  STFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TTCAKSGKVDAM 146
            T N   +L ++C      E A  +LR +   G +AD   Y  ++       + G V+ +
Sbjct: 180 DTGNCNLVLNAICEQGCVDE-AVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEEL 238

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            +     +  P+ V FN LI    ++G  +R  +VLA+M+   H   PD      ++   
Sbjct: 239 MDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE--HGCTPDIRMYATIIDGI 296

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G ++ A E+   +  Y +K     Y   +        W+ A  +  +M +K    D+
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L+DF    G V+   E+L++  + G    +I+Y++++          +A+ L + 
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S   KP   +   ++  LC   +     E++S M   G  PN +T++ L+    +K  
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNEHVLSFNSGRPQIENK 438
           VE  + LL Q   +G  P+L+ +  +I   G   +  E    LN  V   N G       
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMV---NKGISPNTII 533

Query: 439 WTSLALMVYREAIVAGTI 456
           ++S+A  + RE  V   I
Sbjct: 534 YSSIACALSREGRVNKVI 551



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 163/366 (44%), Gaps = 19/366 (5%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D +  + ++N LI    R G      ++L  M   G     ++Y      +CK +  ++ 
Sbjct: 246 DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICK-EGHLEV 304

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A      +P+    P +  +N ++    S++  + A ++L  + +     D   +  L+ 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 136 TCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              ++G VD + E ++        PD + +  +I    + G +D A  +L  M++     
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSS--CGC 422

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P+ ++   ++K   +AG+   A E+   + +      P  +   IN   + G  E A  
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +   M   G  PD +  S +ID  G AGK E A E+L    N+GIS   I YSS+  A S
Sbjct: 483 LLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALS 542

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                 K +++++++K   ++      NA+I++LC   +  + ++  + M S G  PN  
Sbjct: 543 REGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNES 602

Query: 368 TYSILL 373
           TY++L+
Sbjct: 603 TYTMLI 608



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 104/456 (22%), Positives = 176/456 (38%), Gaps = 83/456 (18%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAF-RFFKLVPN 89
           N +  QG + E + LL  +   G       Y+A    +C +++   ++E      ++   
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P + TFN L+     +   E   +VL  + E G   D ++Y T+I    K G ++     
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 146 --------------------------------------MFENVKP-DRVVFNALITACGQ 166
                                                 MF+   P D V FN L+    Q
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQ 368

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           +G VDR  ++L +M +  H   PD IT   ++      G +D A  + K +     K   
Sbjct: 369 NGLVDRVIELLEQMLS--HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNT 426

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             YTI +      G W  A  +   M ++G  P+ V  + LI+F    G VE A E+L++
Sbjct: 427 VSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               G S  +ISYS+++     A   ++ALEL                            
Sbjct: 487 MLVNGCSPDLISYSTVIDGLGKAGKTEEALEL---------------------------- 518

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
                  L+ M + G+ PNTI YS +  A  R+  V   + +    K+  +  + V++  
Sbjct: 519 -------LNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNA 571

Query: 407 IIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
           +I    +R+E  R ++      ++G    E+ +T L
Sbjct: 572 VISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTML 607



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 2/238 (0%)

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
           PV P+  T   +++     G++  A EV   +        P +Y + +    ++G +  +
Sbjct: 106 PVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNS 165

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             V + M  KG   D    + +++     G V+ A  +L++    G    I+SY++++  
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKG 225

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
              AK W    EL + M  +   P + T N LI  LC      +  EVL+ M   G  P+
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD 285

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 421
              Y+ ++    ++  +EV   +L++    G+ PN+V +  ++ G+CS  R+++A  L
Sbjct: 286 IRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEEL 343


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 181/400 (45%), Gaps = 21/400 (5%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +++N L+     +G +++ +  L  M+  GL   D V +    N    +  + EA     
Sbjct: 209 YTFNLLVHTHCSKGTLADALATLSTMQGFGL-SPDAVTYNTLLNAHCRKGMLGEARALLA 267

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      PT  T+N L+S  A     + A +V+  +   G + D + Y  L     ++G
Sbjct: 268 RMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAG 327

Query: 142 KVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           KVD  F             PD V +N L+ AC +      A  +L EM  +   V P  +
Sbjct: 328 KVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKG--VKPTLV 385

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   ++K+    G+++ A    + I +  +      Y   I+   + G+   A ++ D+M
Sbjct: 386 THNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEM 445

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             KG+  D   L+ ++       + E A E+L     +G     +SY ++M A     N 
Sbjct: 446 VGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNP 505

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           + AL L++ M   KL P++ST N LI  LC  ++L + ++ L+++   GL P+  TY+I+
Sbjct: 506 EPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNII 565

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + A  ++ D+E      ++  E+   P++V    ++ G+C
Sbjct: 566 IHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLC 605



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 164/365 (44%), Gaps = 17/365 (4%)

Query: 75  KAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +A  + FR   +L  +P   TFN+L+    S      A   L  +Q  GL  D   Y TL
Sbjct: 190 QASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTL 249

Query: 134 ITT-CAKS--GKVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +   C K   G+  A+   +K     P +  +N L++A  + G + +A  V+  M A  +
Sbjct: 250 LNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTA--Y 307

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWE 243
             +PD  T   L      AG+VD A  +   + + +    P+V  Y   ++ C +     
Sbjct: 308 GFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLST-ALPDVVTYNTLVDACFKWRCSS 366

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  + ++M  KGV P  V  + ++      GK+E A   L++   +G++  +I+Y++L+
Sbjct: 367 DALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLI 426

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
            A   A N  KA  L + M    LK    T+N ++  LC   +     E+L      G  
Sbjct: 427 DAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFV 486

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKART 420
           P+ ++Y  ++ A  ++ + E  L L  Q  E  +IP++  +  +I G+C   R  E    
Sbjct: 487 PDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDK 546

Query: 421 LNEHV 425
           LNE V
Sbjct: 547 LNELV 551



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/474 (21%), Positives = 193/474 (40%), Gaps = 64/474 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R G I +   ++E M   G     + Y+     +C++ K + EAFR    
Sbjct: 280 TYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGK-VDEAFRLKDE 338

Query: 87  VPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +       P + T+N L+  C   + S  A ++L  +++ G+K     +  ++ +  K G
Sbjct: 339 MERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEG 398

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----- 188
           K++           E + PD + +N LI A  ++G V +AF ++ EM  +   +D     
Sbjct: 399 KLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLN 458

Query: 189 ----------------------------PDHITIGALMKACANAGQVDRAREVYKMIHKY 220
                                       PD ++ G +M A       + A  ++  + + 
Sbjct: 459 TVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIER 518

Query: 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
            +  +   Y   I    +    + A    +++ +KG++PDE   + +I      G +E A
Sbjct: 519 KLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENA 578

Query: 281 FEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           F    +         +++ ++LM G C + K   KAL+L+E       K  V T N LI 
Sbjct: 579 FRFHNKMVENSFKPDVVTCNTLMNGLCLHGK-LDKALKLFESWVEKGKKVDVITYNTLIQ 637

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
           ++C    +   +    DM+  GL P+  TY+++L A       E    +L +  + G + 
Sbjct: 638 SMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLS 697

Query: 400 NLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN--KWTSLALMVYREAI 451
               F C +        K  + +E  +  + G+P+ E+  K    AL  Y E +
Sbjct: 698 Q--SFACPL-------LKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERL 742



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 288 KNQGISVGIISYSSLMGACSNAKNW--QKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           + +G+   + + ++++ A S + +   Q +L+++  +  ++L P   T N L+   C   
Sbjct: 163 RRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKG 222

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
            L   +  LS M+  GL P+ +TY+ LL A  RK  +     LL++ K DG+ P    + 
Sbjct: 223 TLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYN 282

Query: 406 CIIGMCSR 413
            ++   +R
Sbjct: 283 TLVSAFAR 290


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 181/414 (43%), Gaps = 50/414 (12%)

Query: 43  ECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNM 97
           + +DLL  M + KG   +D V +    N    +  + +A+  F  +    P+P + T++ 
Sbjct: 189 QALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSS 248

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFE-----N 149
           ++S  + ++  + A QV   + + G+  DC +YT+L+     SGK      +F+      
Sbjct: 249 IISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHG 308

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V+PD V + AL+    ++G    A  +   +    H   PD  T G L+   A  G +  
Sbjct: 309 VEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHK--PDSTTYGTLLHGYATEGALVE 366

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
             ++  ++ K  ++    ++ + +   ++    + A  V+ +M ++G+ PD V    ++D
Sbjct: 367 MHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLD 426

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL----------- 318
               AG+V+ A       K++G++  I+ +++L+        W K  EL           
Sbjct: 427 ILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICL 486

Query: 319 ------------------------YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
                                   ++ M  I ++P  +T N LI   C   ++ + M++L
Sbjct: 487 DTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLL 546

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             M   G+ P+ +TY+ ++    +   +E GL LL +    GV P +V ++ ++
Sbjct: 547 GVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLL 600



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 84/384 (21%), Positives = 165/384 (42%), Gaps = 57/384 (14%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--------------------- 126
           PNP  S+      +C +   +     VLR + E G K D                     
Sbjct: 134 PNPLQSSSQG--PLCTAGGRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQAL 191

Query: 127 ------------CKL----YTTLITTCAKSGKVD---AMFENV-----KPDRVVFNALIT 162
                       C L    YTT+I    + G++D   ++F+ +      PD V ++++I+
Sbjct: 192 DLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIIS 251

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
           A  ++ A+D+A  V   M    + V PD I   +L+    ++G+   A  ++K + ++ +
Sbjct: 252 ALSKTQAMDKATQVFTRMVK--NGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGV 309

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           +     YT  ++   + G    A  ++D + K+G  PD      L+      G +    +
Sbjct: 310 EPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHD 369

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +L     +G+ +G   ++ +MGA +      +AL ++ +M+   L P +     ++  LC
Sbjct: 370 LLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILC 429

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGLMLLSQAKEDGVIP 399
              ++   +   + +KS GL PN + ++ L   L  C++ D VE    L  +  + G+  
Sbjct: 430 TAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVE---ELAFEMIDRGICL 486

Query: 400 NLVMFKCIIG-MCSR-RYEKARTL 421
           + + F  I+G +C + R  +A+ L
Sbjct: 487 DTIFFNAIMGNLCKKGRVIEAKNL 510



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 128/316 (40%), Gaps = 19/316 (6%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V   + +Y  L+    + G+ +E   + + + ++G    D   +    +   ++ A+ 
Sbjct: 307 HGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGH-KPDSTTYGTLLHGYATEGALV 365

Query: 79  EAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           E      L+    +      FNM+M   A     + A  V   +++ GL  D   Y T++
Sbjct: 366 EMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVL 425

Query: 135 TTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
                +G+VD           E + P+ VVF  LI         D+  ++  EM      
Sbjct: 426 DILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDR--G 483

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           +  D I   A+M      G+V  A+ ++ ++ +  I+     Y   I+     G  + A 
Sbjct: 484 ICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAM 543

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +   M   GV P +V  + +I+     G++E    +L+E   +G++ GI++Y  L+   
Sbjct: 544 KLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGL 603

Query: 307 SNAKNWQKALELYEHM 322
             A     A ELY  M
Sbjct: 604 FQAGRTVAAKELYLRM 619



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 142/339 (41%), Gaps = 35/339 (10%)

Query: 130 YTTLITTCAKSGKVDAMFENVKPDRVVFNAL---------------ITACGQSGAVDRAF 174
           Y  +I  C + G++D  F  V   RV+   L                TA G++  +D   
Sbjct: 102 YGIVIGCCRRLGRLDLAFATVG--RVITTGLRHEPNPLQSSSQGPLCTAGGRAMRMDIVL 159

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI--HKYNIKGTPEVYTIA 232
             + E+  +     PD  +   L+K   +     +A ++  ++  HK         YT  
Sbjct: 160 RRMPELGCK-----PDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTV 214

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           IN   + G  + A S++D M  +G  PD V  S++I        ++ A ++       G+
Sbjct: 215 INGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGV 274

Query: 293 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
               I Y+SL+ G CS+ K  ++A+ +++ M    ++P V T  AL+  LC   +  +  
Sbjct: 275 MPDCIMYTSLVHGYCSSGKP-KEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEAR 333

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           ++   +   G  P++ TY  LL     +  +     LL    + G+     +F  I+G  
Sbjct: 334 KIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGA- 392

Query: 412 SRRYEKARTLNEHVLSFNSGR-----PQIENKWTSLALM 445
              Y K   ++E +L F++ R     P I N  T L ++
Sbjct: 393 ---YAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDIL 428



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 135/325 (41%), Gaps = 18/325 (5%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H Y      G+  E I + + M R G+      Y A    +CK+ K+ +    F  LV 
Sbjct: 285 VHGY---CSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVK 341

Query: 89  ---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P  +T+  L+   A+         +L L+ + G++    ++  ++   AK  KVD 
Sbjct: 342 RGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDE 401

Query: 146 ---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
              +F N++     PD V +  ++     +G VD A      + +E   + P+ +    L
Sbjct: 402 ALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSE--GLAPNIVVFTTL 459

Query: 198 MKACANAGQVDRAREV-YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           +       + D+  E+ ++MI +     T     I  N C +    E A +++D M + G
Sbjct: 460 IHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIE-AKNLFDLMVRIG 518

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + P+    + LID     GK++ A ++L      G+    ++Y++++   S     +  L
Sbjct: 519 IEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGL 578

Query: 317 ELYEHMKSIKLKPTVSTMNALITAL 341
            L   M    + P + T   L+  L
Sbjct: 579 TLLREMDGKGVNPGIVTYEMLLQGL 603



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK-EAFRFFKLVPNPTLS 93
           L   GR+ + +     ++ +GL     V+      +C   K  K E   F  +     L 
Sbjct: 428 LCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLD 487

Query: 94  T--FNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----- 145
           T  FN +M ++C   +  E A  +  L+   G++ +   Y TLI      GK+D      
Sbjct: 488 TIFFNAIMGNLCKKGRVIE-AKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLL 546

Query: 146 ---MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
              +F  VKP  V +N +I    Q+G ++    +L EM+ +   V+P  +T   L++   
Sbjct: 547 GVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGK--GVNPGIVTYEMLLQGLF 604

Query: 203 NAGQVDRAREVYKMIHKYN 221
            AG+   A+E+Y  + K++
Sbjct: 605 QAGRTVAAKELYLRMIKWD 623


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 133/265 (50%), Gaps = 2/265 (0%)

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           + + +N+ PD   FN L+ A  + G +  A ++L  M  E   V P+ +T  +LM     
Sbjct: 268 EMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKE--GVMPNVVTYSSLMDGYCL 325

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             QV++A+ V   I +         Y   IN   +    + A S+++DM  KG+ PD+V 
Sbjct: 326 VNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVT 385

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            ++LID    +G++  A+E++ E  + G    I +Y+ L+ A     +  +A+ L + +K
Sbjct: 386 YNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIK 445

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              ++P + T N LI  LC   +L    +V  D+ S G   N  TY+I++    ++   +
Sbjct: 446 DQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFD 505

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
               LLS+  ++G+IP+ V ++ +I
Sbjct: 506 EAEALLSKMDDNGIIPDAVTYETLI 530



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 169/372 (45%), Gaps = 22/372 (5%)

Query: 82  RFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +  K+   P   TFN L+  +C + K  E A      V   G   D   Y TLI    K 
Sbjct: 128 KILKMGYEPDTITFNTLIKGLCLNGKVKE-ALHFHDHVLALGFHLDQFSYGTLINGLCKI 186

Query: 141 G----------KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           G          K+D     VK + V++N +I +  +   V  A+++ ++M A+   + PD
Sbjct: 187 GETRTALQMLRKIDGKL--VKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAK--KISPD 242

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +T  AL+      GQ++ A  +++ +   NI      + I ++   + G+ + A ++  
Sbjct: 243 VVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLV 302

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            M K+GV+P+ V  S+L+D      +V  A  +L      G +    SY +++      K
Sbjct: 303 VMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIK 362

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
              +AL L+  M+   + P   T N+LI  LC   ++    E++ +M   G   N  TY+
Sbjct: 363 MVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYN 422

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSF 428
            L+ A  +   V+  + L+ + K+ G+ P++  F  +I G+C   R + A+ + + +LS 
Sbjct: 423 CLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLS- 481

Query: 429 NSGRPQIENKWT 440
              +    N WT
Sbjct: 482 ---KGYSVNAWT 490



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 68/284 (23%), Positives = 117/284 (41%), Gaps = 8/284 (2%)

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
           F  + PD   FN LI        ++ AF ++A++    +  +PD IT   L+K     G+
Sbjct: 96  FHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGY--EPDTITFNTLIKGLCLNGK 153

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           V  A   +  +           Y   IN   + G+   A  +   +  K V  + V  + 
Sbjct: 154 VKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNT 213

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           +ID       V  A+E+  +   + IS  ++++S+L+         ++A  L+  M    
Sbjct: 214 IIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKN 273

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           + P   T N L+ ALC    L     +L  M   G+ PN +TYS L+      + V    
Sbjct: 274 INPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAK 333

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFN 429
            +L+   + G  PN   +  +I G C     K + ++E +  FN
Sbjct: 334 HVLNTISQMGAAPNAHSYCTMINGFC-----KIKMVDEALSLFN 372



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 104/230 (45%), Gaps = 1/230 (0%)

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
           E H + PD  T   L+    +  +++ A  +   I K   +     +   I      G  
Sbjct: 95  EFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGKV 154

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           + A   +D +   G   D+     LI+     G+   A ++L++   + + + ++ Y+++
Sbjct: 155 KEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTI 214

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           + +    K    A ELY  M + K+ P V T +ALI   C   QL +   +  +M    +
Sbjct: 215 IDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNI 274

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            P+  T++IL+ A  ++ +++    +L    ++GV+PN+V +  ++ G C
Sbjct: 275 NPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYC 324



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 105/243 (43%), Gaps = 14/243 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           P + T++ LM           A  VL  + + G   +   Y T+I    K   VD     
Sbjct: 311 PNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSL 370

Query: 145 ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                F+ + PD+V +N+LI    +SG +  A++++ EM+    P +    T   L+ A 
Sbjct: 371 FNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANI--FTYNCLIDAL 428

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                VD+A  + K I    I+  P++YT  I I    + G  + A  V+ D+  KG   
Sbjct: 429 CKNHHVDQAIALVKKIKDQGIQ--PDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSV 486

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    + +++     G  + A  +L +  + GI    ++Y +L+ A  +    +KA +L 
Sbjct: 487 NAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLL 546

Query: 320 EHM 322
             M
Sbjct: 547 REM 549


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 180/414 (43%), Gaps = 53/414 (12%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMS-V 101
           + E+M R+     +  Y+     +C+S  A++EAF F + + +  LS    T+  LM+ +
Sbjct: 267 VFEEMRRRDCAMNEVTYNVMISGLCRS-GAVEEAFGFKEEMVDYGLSPDAFTYGALMNGL 325

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPD 153
           C   +  E A  +L  +  +GLK +  +Y TL+    K GK    F+         V+P+
Sbjct: 326 CKGGRLKE-AKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPN 384

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           +++++ LI    + G + RA  +L EM    H   PD  T   LM+        D A E+
Sbjct: 385 KIMYDNLIRGLCKIGQLGRASKLLNEMIKVGH--RPDTFTYHPLMQGHFQHYDKDGAFEL 442

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWE------------------------------ 243
              +    I      Y I IN   Q G+ +                              
Sbjct: 443 LNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSK 502

Query: 244 -----FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
                 AC   ++MTK  V+PD    ++LI      G++E A E   + + +G+     +
Sbjct: 503 EGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFT 562

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           YS L+      +N +KA +L + M +  LKP   T   L+      +   K   +L  M 
Sbjct: 563 YSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSML 622

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             G  P+   Y I++    R +++EV  M+L++ +++G++P+L ++  +I G+C
Sbjct: 623 GSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLC 676



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 114/520 (21%), Positives = 202/520 (38%), Gaps = 63/520 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRFFKLVPNPT 91
            +++G+ +E  D+L +M   G+     +Y      +CK     +A K      K+   P 
Sbjct: 360 FMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPD 419

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------- 143
             T++ LM       D +GAF++L  ++ +G+  +   Y  +I    ++G+         
Sbjct: 420 TFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLE 479

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           + + E +KP+  ++  LI    + G +  A + L  M      V PD     +L+K  + 
Sbjct: 480 EMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKA--NVLPDLFCYNSLIKGLST 537

Query: 204 AGQVDRAREVYK----------------MIHKY-------------------NIKGTPEV 228
            G+++ A E Y                 +IH Y                    +K   + 
Sbjct: 538 VGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADT 597

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           YT  +    ++ D E   S+   M   G  PD      +I     +  +E AF +L E +
Sbjct: 598 YTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVE 657

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
             G+   +  YSSL+       + +KA+ L + M    L+P +   NALI   C    + 
Sbjct: 658 KNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDIS 717

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +   V   + + GL PN +TY+ L+    +  D+     L     + G+ P+  ++  + 
Sbjct: 718 RARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLA 777

Query: 409 GMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 466
             CS     E+A  L E +  FN G   +     SL   + R     G +   E +  V+
Sbjct: 778 TGCSDAADLEQALFLTEEM--FNRGYAHV-----SLFSTLVRGFCKRGRLQETEKLLHVM 830

Query: 467 GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 506
              ++  NA   E ++   G      K   LC     F E
Sbjct: 831 MDREIVPNAQTVENVITEFG------KAGKLCEAHRVFAE 864



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 140/327 (42%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           PT    N L+     +   E  +++   ++ AG+  D   Y+T +    K+   DA   +
Sbjct: 208 PTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKV 267

Query: 147 FENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE ++      + V +N +I+   +SGAV+ AF    EM    + + PD  T GALM   
Sbjct: 268 FEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVD--YGLSPDAFTYGALMNGL 325

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G++  A+ +   +    +K    VY   ++   + G    A  + ++M   GV P++
Sbjct: 326 CKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNK 385

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +    LI      G++  A ++L E    G      +Y  LM       +   A EL   
Sbjct: 386 IMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNE 445

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M++  + P   T   +I  LC   +  +   +L +M S GL PN   Y+ L++   ++  
Sbjct: 446 MRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGH 505

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + +    L    +  V+P+L  +  +I
Sbjct: 506 ISLACESLENMTKANVLPDLFCYNSLI 532



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 174/382 (45%), Gaps = 49/382 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVY------HARFFNV---CKS----QKA--- 76
           N L + G   E  +LLE+M  +GL     +Y      H++  ++   C+S     KA   
Sbjct: 463 NGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVL 522

Query: 77  ------------------IKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQV 114
                             I+EA  ++  V      P   T++ L+     +++ E A Q+
Sbjct: 523 PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQL 582

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMFENV-----KPDRVVFNALITACGQ 166
           L+ +  +GLK +   YT L+    KS    KV ++ +++     KPD  ++  +I    +
Sbjct: 583 LQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSR 642

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           S  ++ AF VL E+  E + + PD     +L+        +++A  +   + K  ++   
Sbjct: 643 SENMEVAFMVLTEV--EKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGI 700

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             Y   I+   ++GD   A +V+D +  KG++P+ V  +ALID     G +  AF++ ++
Sbjct: 701 VCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKD 760

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
             ++GI+     Y+ L   CS+A + ++AL L E M + +    VS  + L+   C   +
Sbjct: 761 MLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFN-RGYAHVSLFSTLVRGFCKRGR 819

Query: 347 LPKTMEVLSDMKSLGLCPNTIT 368
           L +T ++L  M    + PN  T
Sbjct: 820 LQETEKLLHVMMDREIVPNAQT 841



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 127/280 (45%), Gaps = 4/280 (1%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           + P R   N L+    ++ A++  + +   M     P  PD  T    ++A   A   D 
Sbjct: 206 LAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIP--PDVYTYSTFLEAHCKARDFDA 263

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A++V++ + + +       Y + I+   ++G  E A    ++M   G+ PD     AL++
Sbjct: 264 AKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMN 323

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G+++ A  +L E    G+   ++ Y++L+          +A ++   M S  ++P
Sbjct: 324 GLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQP 383

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
                + LI  LC   QL +  ++L++M  +G  P+T TY  L+    +  D +    LL
Sbjct: 384 NKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELL 443

Query: 390 SQAKEDGVIPNLVMFKCII-GMCSRRYEK-ARTLNEHVLS 427
           ++ +  G++PN   +  +I G+C     K A  L E ++S
Sbjct: 444 NEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMIS 483



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/181 (20%), Positives = 77/181 (42%)

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           V  + ++   + G    A  V   M   G+ P     + L+     A  +E  +++    
Sbjct: 177 VLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFM 236

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           +  GI   + +YS+ + A   A+++  A +++E M+         T N +I+ LC    +
Sbjct: 237 EGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAV 296

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            +      +M   GL P+  TY  L+    +   ++    LL +    G+ PN+V++  +
Sbjct: 297 EEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATL 356

Query: 408 I 408
           +
Sbjct: 357 V 357



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 44/164 (26%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           LH Y+ LI    +   + + + LL++M ++GL                            
Sbjct: 665 LHIYSSLISGLCKMADMEKAVGLLDEMAKEGL---------------------------- 696

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P +  +N L+     S D   A  V   +   GL  +C  YT LI    K+G + 
Sbjct: 697 ----EPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDIT 752

Query: 145 AMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
             F+         + PD  V+N L T C  +  +++A  +  EM
Sbjct: 753 DAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEM 796


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 154/333 (46%), Gaps = 12/333 (3%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
           T+  +N +M V A +       ++L L++E G   D   + TLI    KSG ++      
Sbjct: 248 TVQVYNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNLALQ 307

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    ++PD + +N LI+AC +   ++ A  V ++M  E H   PD  T  A++  
Sbjct: 308 LLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDM--ESHRCQPDLWTYNAMISV 365

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                +  +A E++K +           Y   +   S+ G+ E    + ++M K+G   D
Sbjct: 366 YGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQD 425

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           E+  + +I   G  G+ + A +I ++ K+ G +   ++Y+ L+ +   A   ++A  +  
Sbjct: 426 EMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMS 485

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    +KPT+ T +ALI A     +  +  E  + M+  G+ P+ + YS++L    R +
Sbjct: 486 EMLDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFN 545

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +++  + L  +   +G  P+  +++ ++    R
Sbjct: 546 EMKKAMGLYHEMIREGFTPDNGLYEVMMHALVR 578



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/405 (21%), Positives = 174/405 (42%), Gaps = 55/405 (13%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKG----LLDMDKVYHARFFN-VCKSQK 75
           V + +  YN ++    R GR S+  +LL+ M  +G    L+  + + +AR  +   +   
Sbjct: 245 VGDTVQVYNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGAMEPNL 304

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A++      +    P + T+N L+S C+   + E A  V   ++    + D   Y  +I+
Sbjct: 305 ALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMIS 364

Query: 136 T---CAKSGKVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
               CA++ K + +F+ ++     PD V +N+L+ A  + G  ++  D+  EM       
Sbjct: 365 VYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVK--RGF 422

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
             D +T   ++      G+ D+A ++Y+                                
Sbjct: 423 GQDEMTYNTIIHMYGKQGRHDQAMQIYR-------------------------------- 450

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
              DM   G  PD V  + LID  G A KVE A  ++ E  + G+   + +YS+L+ A +
Sbjct: 451 ---DMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYA 507

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            A   ++A E +  M+   +KP     + ++      +++ K M +  +M   G  P+  
Sbjct: 508 KAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNG 567

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMC 411
            Y +++ A  R++  +V   ++   +E  G+ P ++    + G C
Sbjct: 568 LYEVMMHALVRENMWDVVDRIIRDMEELSGMNPQVISSVLVKGGC 612



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 168/391 (42%), Gaps = 31/391 (7%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           F  ++   GQ     RA ++   +N   H   P+   +  ++     A Q   A E++  
Sbjct: 183 FCFVVKWVGQQNW-QRALELYECLNLR-HWYAPNARMVATILGVLGKANQEALAVEIFAR 240

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
               ++  T +VY   +   ++ G +     + D M ++G +PD V  + LI+    +G 
Sbjct: 241 AES-SVGDTVQVYNAMMGVYARNGRFSKVKELLDLMRERGCVPDLVSFNTLINARMKSGA 299

Query: 277 VEA--AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           +E   A ++L E +  GI   II+Y++L+ ACS   N ++A+ ++  M+S + +P + T 
Sbjct: 300 MEPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTY 359

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           NA+I+      +  K  E+  +++S G  P+ +TY+ LL A  R+ + E    +  +  +
Sbjct: 360 NAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVK 419

Query: 395 DGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSL---------- 442
            G   + + +  II M  +  R+++A  +   + S  SGR      +T L          
Sbjct: 420 RGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKS--SGRNPDAVTYTVLIDSLGKASKV 477

Query: 443 --ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL------GVSADALKR 494
             A  V  E + AG  PT+   S ++        A  RE   E        G+  D L  
Sbjct: 478 EEAANVMSEMLDAGVKPTLHTYSALICAYA---KAGKREEAEETFNCMRRSGIKPDRLAY 534

Query: 495 SNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
           S +      F E   +A  L  E    G  P
Sbjct: 535 SVMLDFFLRFNEMK-KAMGLYHEMIREGFTP 564



 Score = 78.2 bits (191), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 73/329 (22%), Positives = 141/329 (42%), Gaps = 10/329 (3%)

Query: 88   PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVD 144
            P+PT+ + N L+      +     + V++ +Q+ GLK         +   A++G   +V 
Sbjct: 840  PSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQ 899

Query: 145  AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             ++  +K     P   V+  ++    +   V     +L EM  E     PD     +++K
Sbjct: 900  KIYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEM--EEAGFQPDLQICNSILK 957

Query: 200  ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                         +Y+ I   ++K   E Y   I    +    E   S+ + M   G+ P
Sbjct: 958  LYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEP 1017

Query: 260  DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
                  +LI         E A E+ +E ++ G  +    Y  +M     + + +KA  L 
Sbjct: 1018 KLDTYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLL 1077

Query: 320  EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
              MK   ++PT+STM+ L+ +     Q  +   VL ++++ G+  +T+ YS ++ A  +K
Sbjct: 1078 AIMKESGIEPTISTMHLLMVSYGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKK 1137

Query: 380  DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             D + G+  L++ KE G+ P+  ++ C I
Sbjct: 1138 GDFKAGIEKLTEMKEAGIEPDHRIWTCFI 1166



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 96/435 (22%), Positives = 181/435 (41%), Gaps = 60/435 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKSQKAIKEAFR-- 82
           +YN LI    R+  + E + +  DME          Y+A    +  C   +  +E F+  
Sbjct: 323 TYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKEL 382

Query: 83  ----FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
               FF     P   T+N L+   +   ++E    +   + + G   D   Y T+I    
Sbjct: 383 ESKGFF-----PDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYG 437

Query: 139 KSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDP 189
           K G+ D    ++ ++K     PD V +  LI + G++  V+ A +V++EM +A V P   
Sbjct: 438 KQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPT-- 495

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
              T  AL+ A A AG+ + A E +  + +  IK     Y++ ++   +  + + A  +Y
Sbjct: 496 -LHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLY 554

Query: 250 DDMTKKGVIPD----EVFLSALI----------------DFAG-----------HAGKVE 278
            +M ++G  PD    EV + AL+                + +G             G  +
Sbjct: 555 HEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDMEELSGMNPQVISSVLVKGGCYD 614

Query: 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338
            A ++L+ A + G  +    + S+M + S++  + +A EL E  +            ALI
Sbjct: 615 HAAKMLKVAISNGYELDHEIFLSIMSSYSSSARYSEACELLEFSREHAPNDIQMITEALI 674

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
             LC   +L   +E       LG   +   Y  L+  C + +  +V   + S  + +GV 
Sbjct: 675 IILCKAKKLDAALEEYRSKGELGQFRSCTMYESLIQECIQNELFDVASQIFSDMRFNGVE 734

Query: 399 PNLVMFKCIIGMCSR 413
            +  +++ ++ +  R
Sbjct: 735 SSECLYQGMVSVYCR 749



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 91/477 (19%), Positives = 186/477 (38%), Gaps = 65/477 (13%)

Query: 88   PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM- 146
            PN        L+ +   +K  + A +  R   E G    C +Y +LI  C ++   D   
Sbjct: 663  PNDIQMITEALIIILCKAKKLDAALEEYRSKGELGQFRSCTMYESLIQECIQNELFDVAS 722

Query: 147  -------FENVKPDRVVFNALITACGQSGAVDRAFDVL--AEMNAEVHPVDPDHITIGAL 197
                   F  V+    ++  +++   +    + A  +L  AE N  +  +D D      +
Sbjct: 723  QIFSDMRFNGVESSECLYQGMVSVYCRMDLPETAHHLLYHAEKNGII--LDNDISVYIDI 780

Query: 198  MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            ++         +A  +   + +   K   +V+   I+  + +G +E A ++++ M + G 
Sbjct: 781  VETYGKLKIWQKAESLVGSLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMRDGP 840

Query: 258  IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             P    ++ L+       ++   + ++QE ++ G+ +   S    + A + A N  +  +
Sbjct: 841  SPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFAQAGNLFEVQK 900

Query: 318  LYEHMKSIKLKPTVSTMNALITALC------DGDQLPKTMEV------------------ 353
            +Y  MK+    PT+     ++  LC      D + +   ME                   
Sbjct: 901  IYNGMKAAGYFPTMHVYRIMLRLLCKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYL 960

Query: 354  -LSDMKSLG----------LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
             + D KS+G          L P+  TY+ L++   R    E G  L+++ +  G+ P L 
Sbjct: 961  GIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGFSLMNKMRSLGLEPKLD 1020

Query: 403  MFKCIIGMCS--RRYEKARTLNEHV-------------LSFNSGRPQIENKWTSLALMVY 447
             ++ +I   +  R YE+A  L E +             L   + R   +++     L + 
Sbjct: 1021 TYRSLITAFNKQRMYEQAEELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIM 1080

Query: 448  REAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
            +E+ +  TI T+ ++    G    P  A   E +++NL  +   L      S+ID +
Sbjct: 1081 KESGIEPTISTMHLLMVSYGKSGQPEEA---ENVLKNLRTTGVVLDTLPYSSVIDAY 1134



 Score = 47.0 bits (110), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 71/367 (19%), Positives = 143/367 (38%), Gaps = 51/367 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R+G   +  D+ E+M ++G    D++ +    ++   Q    +A + ++ 
Sbjct: 393 TYNSLLYAFSREGNTEKVRDICEEMVKRGF-GQDEMTYNTIIHMYGKQGRHDQAMQIYRD 451

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     NP   T+ +L+     +   E A  V+  + +AG+K     Y+ LI   AK+GK
Sbjct: 452 MKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGK 511

Query: 143 VDAMFEN--------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
            +   E         +KPDR+ ++ ++    +   + +A  +  EM  E     PD+   
Sbjct: 512 REEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIRE--GFTPDNGLY 569

Query: 195 GALMKACANAGQVDRAREVYK-----------MIHKYNIKG-----TPEVYTIAINCCSQ 238
             +M A       D    + +           +I    +KG       ++  +AI+   +
Sbjct: 570 EVMMHALVRENMWDVVDRIIRDMEELSGMNPQVISSVLVKGGCYDHAAKMLKVAISNGYE 629

Query: 239 TGDWEF---------------ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                F               AC + +   +      ++   ALI     A K++AA E 
Sbjct: 630 LDHEIFLSIMSSYSSSARYSEACELLEFSREHAPNDIQMITEALIIILCKAKKLDAALEE 689

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
            +     G       Y SL+  C   + +  A +++  M+   ++ +      +++  C 
Sbjct: 690 YRSKGELGQFRSCTMYESLIQECIQNELFDVASQIFSDMRFNGVESSECLYQGMVSVYCR 749

Query: 344 GDQLPKT 350
            D LP+T
Sbjct: 750 MD-LPET 755


>gi|168019209|ref|XP_001762137.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162686541|gb|EDQ72929.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 513

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 155/335 (46%), Gaps = 18/335 (5%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDA 145
           +P L T+N  + V   S   + A  V R +Q  G+      +T +I    K   S K + 
Sbjct: 168 SPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINIYGKAHHSAKAEH 227

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +F++++     P    + ALI A  + G   RA ++ AE+ + V  V PD  T  AL++A
Sbjct: 228 LFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQS-VGFV-PDIYTYNALLEA 285

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            +  G    A+EV++ + +  +K     Y I I+   + G    A ++YD M K G  P 
Sbjct: 286 YSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPT 345

Query: 261 E----VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
                + LSA +     AG+V  A   ++  ++ G+      ++SL+GA  N+    K  
Sbjct: 346 MKSHILLLSAFVK----AGRVTDAENFVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKME 401

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            LYE M+    KP + T+N LI     G  + +  E+ + ++S G  P+ ++++ L+ A 
Sbjct: 402 SLYESMQGSVCKPDIITLNTLINVYAQGGYIERAEEIFNSLESKGFTPDVMSWTSLMGAY 461

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
            ++      + +  +    G IP+    K ++  C
Sbjct: 462 SKRKLYRKCVSVYQKMLIAGCIPDRATAKVLLSSC 496



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 164/414 (39%), Gaps = 38/414 (9%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           KPD   FN L+ A G++     A +    M        P   +   LM A +  GQ++RA
Sbjct: 98  KPDVGCFNMLMDAYGRTKQWTEAENTFHLMKK--FQCLPTETSFNVLMAAYSRGGQLERA 155

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
             V   + + N       Y   +   +++G W+ A  V+ +M  +GV P     + +I+ 
Sbjct: 156 ERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPAVNTFTLMINI 215

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
            G A     A  + Q  +       + +Y++L+ A +   N  +A E++  ++S+   P 
Sbjct: 216 YGKAHHSAKAEHLFQSMRKALCPPSLFTYTALINAHAREGNCVRAEEIFAELQSVGFVPD 275

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           + T NAL+ A   G       EV   M   G+  + ++Y+IL+ A  R      GL+  +
Sbjct: 276 IYTYNALLEAYSRGGHPAGAKEVFETMLEAGVKADHVSYNILIDAFGR-----AGLISDA 330

Query: 391 QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFN----SGR-PQIENKWTSLALM 445
           QA  D +    V FK              T+  H+L  +    +GR    EN    L  M
Sbjct: 331 QAIYDSM--KKVGFK-------------PTMKSHILLLSAFVKAGRVTDAENFVRRLESM 375

Query: 446 VYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF- 504
                   G  P   + + +LG        D  E L E++  S        L +LI+ + 
Sbjct: 376 --------GVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSVCKPDIITLNTLINVYA 427

Query: 505 -GEYDPRAFSLLEEAASFGIVPCV-SFKEIPVVVDARKLEIHTAKVYLLTILKG 556
            G Y  RA  +     S G  P V S+  +      RKL      VY   ++ G
Sbjct: 428 QGGYIERAEEIFNSLESKGFTPDVMSWTSLMGAYSKRKLYRKCVSVYQKMLIAG 481



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/204 (21%), Positives = 99/204 (48%), Gaps = 7/204 (3%)

Query: 216 MIHKYNIKGT---PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           +I+++ ++G+   P+V  + + ++   +T  W  A + +  M K   +P E   + L+  
Sbjct: 86  VIYEWILQGSMFKPDVGCFNMLMDAYGRTKQWTEAENTFHLMKKFQCLPTETSFNVLMAA 145

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G++E A  +L E K    S G+++Y++ +   + + +WQ A +++  M++  + P 
Sbjct: 146 YSRGGQLERAERVLHEMKESNCSPGLVTYNTYLEVLNKSGSWQLAEDVFREMQNRGVPPA 205

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVACERKDDVEVGLMLL 389
           V+T   +I          K   +   M+   LCP ++ TY+ L+ A  R+ +      + 
Sbjct: 206 VNTFTLMINIYGKAHHSAKAEHLFQSMRK-ALCPPSLFTYTALINAHAREGNCVRAEEIF 264

Query: 390 SQAKEDGVIPNLVMFKCIIGMCSR 413
           ++ +  G +P++  +  ++   SR
Sbjct: 265 AELQSVGFVPDIYTYNALLEAYSR 288



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 52/250 (20%)

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           HAR  N  ++++   E  +    VP+  + T+N L+   +      GA +V   + EAG+
Sbjct: 251 HAREGNCVRAEEIFAE-LQSVGFVPD--IYTYNALLEAYSRGGHPAGAKEVFETMLEAGV 307

Query: 124 KADCKLYTTLITTCAKSGKVD---AMFENVK----------------------------- 151
           KAD   Y  LI    ++G +    A+++++K                             
Sbjct: 308 KADHVSYNILIDAFGRAGLISDAQAIYDSMKKVGFKPTMKSHILLLSAFVKAGRVTDAEN 367

Query: 152 -----------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      PD  +FN+L+ A G SG +D+   +   M   V    PD IT+  L+  
Sbjct: 368 FVRRLESMGVEPDTFMFNSLLGAYGNSGRMDKMESLYESMQGSV--CKPDIITLNTLINV 425

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
            A  G ++RA E++  +       TP+V  +T  +   S+   +    SVY  M   G I
Sbjct: 426 YAQGGYIERAEEIFNSLESKGF--TPDVMSWTSLMGAYSKRKLYRKCVSVYQKMLIAGCI 483

Query: 259 PDEVFLSALI 268
           PD      L+
Sbjct: 484 PDRATAKVLL 493


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 116/518 (22%), Positives = 212/518 (40%), Gaps = 30/518 (5%)

Query: 14  PNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR----FFN 69
           P     +Y    +  + + NR  +  +  E +  L+ M  +G    D +   +    FFN
Sbjct: 66  PTKHDQDYDFRDTNFMKTLNRSCKSAKYDESLYFLQHMVNRGY-KPDVILCTKLIKGFFN 124

Query: 70  VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
           + K +KAI +     +    P +  +N ++S    +   + A +VL  +++ G + D   
Sbjct: 125 MKKIEKAI-QVMEILEKHGKPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVT 183

Query: 130 YTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y  LI      G++D           +N KP  + +  LI A    G +D A  +L EM 
Sbjct: 184 YNILIGNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEML 243

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
           +    + PD  T   ++      G +DRA E    I K         Y I +      G 
Sbjct: 244 S--RGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGK 301

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
           WE+   +  DM  KG  P+ +  S LI      GK++ A  +L+  K + ++    SY  
Sbjct: 302 WEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDP 361

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+ A         A+E  + M S    P + + N+++ +LC      + + +   +  +G
Sbjct: 362 LISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVG 421

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
             PN  +Y+ L  A     D    L ++ +   +G+ P+ + +  +I    R     + +
Sbjct: 422 CPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAI 481

Query: 422 NEHVLSFNSGR--PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL--GCLQLPYNADI 477
              V  F S +  P + +  T L  +   + I    I  +EV++ ++  GCL    N   
Sbjct: 482 ELLVDMFESEKCQPTVISYNTVLLGLCKVQRI----IDAIEVLAAMVNEGCLP---NETT 534

Query: 478 RERLVENLGVSA---DALKRSNLCSLIDGFGEYDPRAF 512
              L++ +G +    DA++ +NL   +D   E   + F
Sbjct: 535 YTLLIQGIGFAGWRYDAMELANLLVNMDAISEDSFKRF 572


>gi|357502623|ref|XP_003621600.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496615|gb|AES77818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 890

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/328 (24%), Positives = 152/328 (46%), Gaps = 13/328 (3%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
           T+ +F+ ++S    +     A  + R +   G+  +   Y ++I   AK G+V       
Sbjct: 247 TVHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDAGAK-GEVSFDVVVK 305

Query: 144 --DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             D M  N + PDR+ +N+L++ C   G  + A  +L+EM+     + PD  T    +  
Sbjct: 306 FYDEMIANGLMPDRLTYNSLLSVCASKGMWEMAQKLLSEMDHRC--IVPDVFTYNTYLDT 363

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              AGQ+D AR V++ +    +      Y+  ++  ++    E A ++Y++M  + V  D
Sbjct: 364 LCKAGQIDLARRVFEEMSSKRVWPNVVTYSAMMDGYAKANLLEDALNLYEEMKLRSVCLD 423

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + L+      G ++ A E  +E +  GI+  +++Y++L+        + +   L+E
Sbjct: 424 RVSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRDVVTYNALLSGYGKHGMYDEVRRLFE 483

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            MK+  + P   T + +I     G+   + M+V  + K   L  + + YS ++    +  
Sbjct: 484 EMKARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAIIDTLCKNG 543

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            +E  +MLL    E G+ PN+V F  II
Sbjct: 544 LMESSIMLLMAMMEKGIKPNVVTFNSII 571



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 168/366 (45%), Gaps = 37/366 (10%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +HS++ +I    R GR  + +DL   M   G++     Y++      K + +     +F+
Sbjct: 248 VHSFSAMISAFGRNGRFPDAVDLFRSMSSWGVVPNVITYNSIIDAGAKGEVSFDVVVKFY 307

Query: 85  -KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +++ N   P   T+N L+SVCAS    +G +++ +           KL + +   C   
Sbjct: 308 DEMIANGLMPDRLTYNSLLSVCAS----KGMWEMAQ-----------KLLSEMDHRC--- 349

Query: 141 GKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    + PD   +N  +    ++G +D A  V  EM+++   V P+ +T  A+M  
Sbjct: 350 ---------IVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSK--RVWPNVVTYSAMMDG 398

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A A  ++ A  +Y+ +   ++      Y   +    + G+ + A     +M + G+  D
Sbjct: 399 YAKANLLEDALNLYEEMKLRSVCLDRVSYNTLVGIYEKLGNLDEAIEKCKEMERSGINRD 458

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  +AL+   G  G  +    + +E K + I    ++YS+++   +  + +Q+A+++Y 
Sbjct: 459 VVTYNALLSGYGKHGMYDEVRRLFEEMKARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYR 518

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
             K  +L+  V   +A+I  LC    +  ++ +L  M   G+ PN +T++ ++ A ++  
Sbjct: 519 EFKMARLEIDVVFYSAIIDTLCKNGLMESSIMLLMAMMEKGIKPNVVTFNSIIDASQQSP 578

Query: 381 DVEVGL 386
            +E G+
Sbjct: 579 TLEYGV 584



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 115/236 (48%), Gaps = 11/236 (4%)

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
           + A++      G+++ A  +++         T   ++  I+   + G +  A  ++  M+
Sbjct: 216 VSAMIGTLGRLGEINLALGLFERARLEGYGSTVHSFSAMISAFGRNGRFPDAVDLFRSMS 275

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI----ISYSSLMGACSNA 309
             GV+P+ +  +++ID AG  G+V  +F+++ +  ++ I+ G+    ++Y+SL+  C++ 
Sbjct: 276 SWGVVPNVITYNSIID-AGAKGEV--SFDVVVKFYDEMIANGLMPDRLTYNSLLSVCASK 332

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
             W+ A +L   M    + P V T N  +  LC   Q+     V  +M S  + PN +TY
Sbjct: 333 GMWEMAQKLLSEMDHRCIVPDVFTYNTYLDTLCKAGQIDLARRVFEEMSSKRVWPNVVTY 392

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
           S ++    + + +E  L L  + K   V  + V +  ++G+    YEK   L+E +
Sbjct: 393 SAMMDGYAKANLLEDALNLYEEMKLRSVCLDRVSYNTLVGI----YEKLGNLDEAI 444



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 1/156 (0%)

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + G +     +SA+I   G  G++  A  + + A+ +G    + S+S+++ A      + 
Sbjct: 206 QNGRVDKGKLVSAMIGTLGRLGEINLALGLFERARLEGYGSTVHSFSAMISAFGRNGRFP 265

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGD-QLPKTMEVLSDMKSLGLCPNTITYSIL 372
            A++L+  M S  + P V T N++I A   G+      ++   +M + GL P+ +TY+ L
Sbjct: 266 DAVDLFRSMSSWGVVPNVITYNSIIDAGAKGEVSFDVVVKFYDEMIANGLMPDRLTYNSL 325

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L  C  K   E+   LLS+     ++P++  +   +
Sbjct: 326 LSVCASKGMWEMAQKLLSEMDHRCIVPDVFTYNTYL 361



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 111/264 (42%), Gaps = 45/264 (17%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN L+    + G + E I+  ++MER G+ + D V +    +         E  R F+ 
Sbjct: 426 SYNTLVGIYEKLGNLDEAIEKCKEMERSGI-NRDVVTYNALLSGYGKHGMYDEVRRLFEE 484

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T++ ++ +    +  + A  V R  + A L+ D   Y+ +I T  K+G 
Sbjct: 485 MKARNIYPNTLTYSTMIDMYTKGEMFQEAMDVYREFKMARLEIDVVFYSAIIDTLCKNGL 544

Query: 143 VDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +++        M + +KP+ V FN++I A  QS  ++  + V    +A  +P++     +
Sbjct: 545 MESSIMLLMAMMEKGIKPNVVTFNSIIDASQQSPTLE--YGVNGSSDAIDYPIEQSSPIV 602

Query: 195 --GALMK--------------ACANAGQVDRARE----------VYKMIHKYNIKGTPEV 228
             GA                 A   AG + + R           +++ +H+ NIK     
Sbjct: 603 IDGAFQNKPGEDRILKMFEQLAAEKAGHLKKNRSGRQDKHCILWLFQKMHELNIKPNVVT 662

Query: 229 YTIAINCCSQTGDWEFACSVYDDM 252
           ++  +N CS    +E A  + D +
Sbjct: 663 FSAILNACSLCNSYEDASLLLDTL 686


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 176/404 (43%), Gaps = 37/404 (9%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           Y +DV+  +   N L ++G + +   L+E+M   GL      Y+      C+ +    EA
Sbjct: 247 YPNDVTYNV-LVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQ-KGLFVEA 304

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F   + + N    PTLST+N LM            + + + VQ  G++            
Sbjct: 305 FDLVEEMVNRRAFPTLSTYNTLM------------YGLCKWVQVTGVRLRFS-------- 344

Query: 137 CAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                  D +     PD V FN+L+    ++G +  AF +  E+  +   + P  IT   
Sbjct: 345 -------DMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDEL--KCRDLVPTVITYNT 395

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+      G +D A  + K +    +      YTI +N C + G    A   +++M  KG
Sbjct: 396 LIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKG 455

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD    +  I           AF + +E    G    +I+Y+  + A     N+++A 
Sbjct: 456 LKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEAC 515

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +L E+M S  L P   T  ++I        L K  EV ++M S G+ P+ +TY++L+ A 
Sbjct: 516 DLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAH 575

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA 418
             K  +++  M  S+  E  V  N++ +  II G+C +RR ++A
Sbjct: 576 AAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEA 619



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 156/363 (42%), Gaps = 25/363 (6%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LI    ++G   E  DL+E+M  +        Y+   + +CK  +      RF  
Sbjct: 286 YTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSD 345

Query: 86  LVPN---PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           ++ +   P + +FN +L   C +   SE AF +   ++   L      Y TLI      G
Sbjct: 346 MLKSKFTPDIVSFNSLLYGYCRTGCISE-AFLLFDELKCRDLVPTVITYNTLIHGLCMWG 404

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            +DA          + + PD   +  L+  C + G V  A     EM ++   + PD   
Sbjct: 405 YLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSK--GLKPDRFA 462

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYD 250
               +           A   + M  +    G P     Y + ++   Q G++E AC + +
Sbjct: 463 YNTRIVGEMKIADTSVA---FSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLE 519

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M   G+IPD V  +++I+     G +  A E+  E  ++G++  +++Y+ L+ A +  +
Sbjct: 520 NMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQ 579

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
               A   +  M    +   V T NA+I  LC   ++ +  +   +M+  G+ PN  +Y+
Sbjct: 580 MLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYT 639

Query: 371 ILL 373
           IL+
Sbjct: 640 ILI 642



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 110/231 (47%), Gaps = 1/231 (0%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD      +++   +   + +A+ VY M+ ++ IK T   Y   ++   + G  + A  +
Sbjct: 178 PDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALEL 237

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
             +M ++G  P++V  + L++     G++E A  +++E  N G++V   +Y+ L+     
Sbjct: 238 LSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQ 297

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
              + +A +L E M + +  PT+ST N L+  LC   Q+       SDM      P+ ++
Sbjct: 298 KGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVS 357

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKA 418
           ++ LL    R   +    +L  + K   ++P ++ +  +I G+C   Y  A
Sbjct: 358 FNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDA 408



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 143/327 (43%), Gaps = 19/327 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           S+N L+    R G ISE   L ++++ + L+     Y+     +C     +  A R  K 
Sbjct: 357 SFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCM-WGYLDAALRLKKE 415

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-------- 134
           + +    P + T+ +L++ C        A      +   GLK D   Y T I        
Sbjct: 416 MTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIAD 475

Query: 135 TTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           T+ A S + + +     PD + +N  + A  Q G  + A D+L  M ++   + PDH+T 
Sbjct: 476 TSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSD--GLIPDHVTY 533

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +++      G + +AREV+  +    +  +   YT+ I+  +     + A   +  M +
Sbjct: 534 TSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLE 593

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           K V  + +  +A+I+      +++ A++   E + +GI     SY+ L+    N   W++
Sbjct: 594 KSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEE 653

Query: 315 ALELYEHMKSIKLKPTVSTMNALITAL 341
           AL LY  M   K++P   T +  +  L
Sbjct: 654 ALRLYREMLDRKIQPDSFTHSVFLKNL 680



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 92/430 (21%), Positives = 178/430 (41%), Gaps = 23/430 (5%)

Query: 144 DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M  N + PD    N ++        + +A +V   M  E   + P  +T   ++ +  
Sbjct: 169 DKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMM--EQFGIKPTVVTYNTMLDSYC 226

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G+VD+A E+   + +         Y + +N  S+ G+ E A  + ++M   G+     
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEH 321
             + LI+     G    AF++++E  N+     + +Y++LM G C   +     L   + 
Sbjct: 287 TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDM 346

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +KS K  P + + N+L+   C    + +   +  ++K   L P  ITY+ L+        
Sbjct: 347 LKS-KFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGY 405

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLS---------FNS 430
           ++  L L  +  + G+ P++  +  ++  C +      AR     +LS         +N+
Sbjct: 406 LDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNT 465

Query: 431 ---GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 487
              G  +I +  TS+A  +  E + AG  P V   +  +  L    N +    L+EN+  
Sbjct: 466 RIVGEMKIAD--TSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVS 523

Query: 488 SADALKRSNLCSLIDGFGE--YDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHT 545
                      S+I+GF +  +  +A  +  E  S G+ P V    + +   A K  +  
Sbjct: 524 DGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDL 583

Query: 546 AKVYLLTILK 555
           A +Y   +L+
Sbjct: 584 AFMYFSKMLE 593



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 153/393 (38%), Gaps = 50/393 (12%)

Query: 83  FFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F K++ N   P +   N ++ V         A  V  ++++ G+K     Y T++ +  K
Sbjct: 168 FDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCK 227

Query: 140 SGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEM-----NAEVHP 186
            G+VD   E           P+ V +N L+    + G +++A  ++ EM     N   + 
Sbjct: 228 EGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYT 287

Query: 187 VDP---------------DHI-------------TIGALMKACANAGQVDRAREVYKMIH 218
            +P               D +             T   LM       QV   R  +  + 
Sbjct: 288 YNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDML 347

Query: 219 KYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           K   K TP++  +   +    +TG    A  ++D++  + ++P  +  + LI      G 
Sbjct: 348 KS--KFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGY 405

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           ++AA  + +E  +QG+   I +Y+ L+  C        A   +  M S  LKP     N 
Sbjct: 406 LDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNT 465

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
            I              +  +M + G  P+ ITY++ + A  ++ + E    LL     DG
Sbjct: 466 RIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDG 525

Query: 397 VIPNLVMFKCIIGMCSR--RYEKARTLNEHVLS 427
           +IP+ V +  II    +     KAR +   +LS
Sbjct: 526 LIPDHVTYTSIINGFVKNGHLRKAREVFNEMLS 558



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 4/118 (3%)

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           L +++ M    L P V   N ++  L D + L K   V   M+  G+ P  +TY+ +L +
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDS 224

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSG 431
             ++  V+  L LLS+ +E G  PN V +  ++   S++   E+A+ L E +L  NSG
Sbjct: 225 YCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEML--NSG 280



 Score = 40.8 bits (94), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 42/197 (21%), Positives = 78/197 (39%), Gaps = 15/197 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L +QG   E  DLLE+M   GL+  D V +    N       +++A   F  + +    P
Sbjct: 505 LCQQGNFEEACDLLENMVSDGLIP-DHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAP 563

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
           ++ T+ +L+   A+ +  + AF     + E  + A+   Y  +I     + ++D  +   
Sbjct: 564 SVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYF 623

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                + + P++  +  LI      G  + A  +  EM      + PD  T    +K   
Sbjct: 624 DEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDR--KIQPDSFTHSVFLKNLH 681

Query: 203 NAGQVDRAREVYKMIHK 219
              QV   + V  +I  
Sbjct: 682 RDYQVHAVQCVESLIQN 698


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 179/395 (45%), Gaps = 16/395 (4%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
           + +S    S N ++ +  + E + L +++  K     + +  A    +C + + IK+A +
Sbjct: 220 YGISPSPESCNAVLCRLPLDEAVQLFQELPEKNTCSYNILLKA----LCTAGR-IKDAHQ 274

Query: 83  FF-KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            F ++   P + T+ +++    +  + E A ++L  +   GL+ +   YT++I      G
Sbjct: 275 LFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEG 334

Query: 142 KV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +V        D +   V  D  VF  +++   + G +  A +   EM  +   +  D +T
Sbjct: 335 QVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEM--QKRGLAADGVT 392

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+     AG++  A  V + +    +      YT+ I+   + G    A  V++ M 
Sbjct: 393 YTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMV 452

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +K V P+ V  +AL D     G V AA E+L E  ++G+ + I +Y+SL+     A N +
Sbjct: 453 QKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLE 512

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A+     M    LKP V T   +I ALC   +L +   +L +M   G+ P  +TY++L+
Sbjct: 513 QAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLM 572

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                   VE G  LL    E  + PN   +  ++
Sbjct: 573 NGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLM 607



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 98/431 (22%), Positives = 181/431 (41%), Gaps = 21/431 (4%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LV 87
           +H Y  L     +   I LL +M  +GL +++ V +     +   +  + +A R  + +V
Sbjct: 292 VHGYCTL---SELETAIKLLSEMAARGL-ELNPVAYTSVIALLCDEGQVSDAVRVVEDMV 347

Query: 88  PNPTL---STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV- 143
            +  +   + F  +MS      D   A      +Q+ GL AD   YT LI    ++G++ 
Sbjct: 348 MHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELK 407

Query: 144 -------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                  +   + +  D V +  LI    + G +  AF V  +M  +   V P+ +T  A
Sbjct: 408 EAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKR--VTPNVVTYTA 465

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L       G V  A E+   +    ++     Y   IN   + G+ E A     DM + G
Sbjct: 466 LSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAG 525

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD    + +I     + +++ A  +LQE  ++GI   I++Y+ LM     +   +   
Sbjct: 526 LKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGK 585

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            L E M    + P  +T N+L+   C    +  T E+   M S  + PN  TY+IL+   
Sbjct: 586 RLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGH 645

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFN-SGRP 433
            +  +++  L   S+  E G       +  +I + +  +++ +AR L E +     +  P
Sbjct: 646 CKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEP 705

Query: 434 QIENKWTSLAL 444
            + N +  L+ 
Sbjct: 706 DVYNFYIDLSF 716



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/407 (21%), Positives = 167/407 (41%), Gaps = 50/407 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L  +G++S+ + ++EDM   G++    V+       C+ +  +  A  +F  +    L+ 
Sbjct: 330 LCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCR-KGDLAAARNWFDEMQKRGLAA 388

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
              T+  L++    + + + A +VL+ +++ GL  D   YT LI    K GK+   F   
Sbjct: 389 DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVH 448

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                + V P+ V + AL     + G V  A ++L EM ++   ++ +  T  +L+    
Sbjct: 449 NKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSK--GLELNIFTYNSLINGLC 506

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AG +++A      + +  +K     YT  I    Q+ + + A S+  +M  KG+ P  V
Sbjct: 507 KAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIV 566

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L++    +G+VE    +L+    + I     +Y+SLM      KN +   E+Y+ M
Sbjct: 567 TYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGM 626

Query: 323 KSIKLKP-----------------------------------TVSTMNALITALCDGDQL 347
            S ++ P                                   T S+ NALI  L    + 
Sbjct: 627 LSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKF 686

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            +   +   M+   L      Y+  +     +D++E  L L  +  E
Sbjct: 687 TEARRLFEKMRKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELVE 733



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 146/381 (38%), Gaps = 93/381 (24%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFF------K 85
           N L R G + E   +L++ME KGL D+D V +    +  CK  K + EAF         +
Sbjct: 398 NGLCRAGELKEAERVLQEMEDKGL-DVDAVTYTVLIDGYCKVGK-MTEAFLVHNKMVQKR 455

Query: 86  LVPNP---------------------------------TLSTFNMLMSVCASSKDSEGAF 112
           + PN                                   + T+N L++    + + E A 
Sbjct: 456 VTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAM 515

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--------AMFENVKPDRVVFNALITAC 164
           + +  + EAGLK D   YTT+I    +S ++D         + + +KP  V +N L+   
Sbjct: 516 RTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGF 575

Query: 165 GQSGAVD---RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
             SG V+   R  + + E N     + P+  T  +LMK               +   + N
Sbjct: 576 CMSGRVEGGKRLLEWMLEKN-----IHPNTTTYNSLMK---------------QYCIEKN 615

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           +K T E+Y                      M  + V+P+E   + LI     A  ++ A 
Sbjct: 616 MKSTTEIYK--------------------GMLSQEVVPNENTYNILIKGHCKARNMKEAL 655

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
               E   +G  +   SY++L+   +  K + +A  L+E M+  +L       N  I   
Sbjct: 656 YFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRKERLTAEPDVYNFYIDLS 715

Query: 342 CDGDQLPKTMEVLSDMKSLGL 362
            + D L  T+ +  ++  + L
Sbjct: 716 FNEDNLESTLALCDELVEVTL 736


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 155/347 (44%), Gaps = 12/347 (3%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +  KL   P++ T + L++     K    A  ++  + E G + D   +TTLI       
Sbjct: 69  KMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 128

Query: 142 K-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K       VD M +   +P+ V +  ++    + G +D AF++L +M  E   ++ D + 
Sbjct: 129 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM--EAAKIEADVVI 186

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              ++ +      VD A  ++K +    I+     Y+  I+C    G W  A  +  DM 
Sbjct: 187 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 246

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +K + P+ V  +ALID     GK   A ++  +   + I   I +Y+SL+          
Sbjct: 247 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 306

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA +++E M S    P + T N LI   C   ++    E+  +M   GL  +T+TY+ L+
Sbjct: 307 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 366

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 418
                  D +    +  Q   DGV P+++ +  ++ G+C+  + EKA
Sbjct: 367 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKA 413



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 181/397 (45%), Gaps = 17/397 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L    + SE + L++ M ++G       Y      +CK +  I  AF     +    +  
Sbjct: 124 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCK-RGDIDLAFNLLNKMEAAKIEA 182

Query: 95  ----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------- 142
               FN ++      +  + A  + + ++  G++ +   Y++LI+     G+        
Sbjct: 183 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 242

Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
            D + + + P+ V FNALI A  + G    A  +  +M      +DPD  T  +L+    
Sbjct: 243 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKR--SIDPDIFTYNSLINGFC 300

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              ++D+A+++++ +   +     + Y   I    ++   E    ++ +M+ +G++ D V
Sbjct: 301 MHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 360

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEH 321
             + LI    H G  + A ++ ++  + G+   I++YS L+ G C+N K  +KALE++++
Sbjct: 361 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK-LEKALEVFDY 419

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+  ++K  +     +I  +C   ++    ++   +   G+ PN +TY+ ++     K  
Sbjct: 420 MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRL 479

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
           ++    LL + KEDG +P+   +  +I    R  +KA
Sbjct: 480 LQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKA 516



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 155/361 (42%), Gaps = 15/361 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G I    +LL  ME   +     +++    ++CK  + + +A   FK +     
Sbjct: 157 NGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK-YRHVDDALNLFKEMETKGI 215

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P + T++ L+S   S      A Q+L  + E  +  +   +  LI    K GK      
Sbjct: 216 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 275

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              D +  ++ PD   +N+LI        +D+A  +   M ++     PD  T   L+K 
Sbjct: 276 LHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSK--DCFPDLDTYNTLIKG 333

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              + +V+   E+++ +    + G    YT  I      GD + A  V+  M   GV PD
Sbjct: 334 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 393

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  S L+D   + GK+E A E+    +   I + I  Y++++     A       +L+ 
Sbjct: 394 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 453

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            +    +KP V T N +I+ LC    L +   +L  MK  G  P++ TY+ L+ A  R  
Sbjct: 454 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDG 513

Query: 381 D 381
           D
Sbjct: 514 D 514



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 149/343 (43%), Gaps = 23/343 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           + L +   + + ++L ++ME KG+      Y +    +C   +    +     ++    N
Sbjct: 192 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 251

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK----ADCKLYTTLITTCAKSGKVDA 145
           P L TFN L+         EG F     + +  +K     D   Y +LI       ++D 
Sbjct: 252 PNLVTFNALIDAFVK----EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDK 307

Query: 146 ---MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
              MFE     +  PD   +N LI    +S  V+   ++  EM+     +  D +T   L
Sbjct: 308 AKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHR--GLVGDTVTYTTL 365

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           ++   + G  D A++V+K +    +      Y+I ++     G  E A  V+D M K  +
Sbjct: 366 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 425

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             D    + +I+    AGKV+  +++      +G+   +++Y++++    + +  Q+A  
Sbjct: 426 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 485

Query: 318 LYEHMKSIKLKPTVSTMNALITA-LCDGDQLPKTMEVLSDMKS 359
           L + MK     P   T N LI A L DGD+   + E++ +M+S
Sbjct: 486 LLKKMKEDGPLPDSGTYNTLIRAHLRDGDK-AASAELIREMRS 527



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 144/343 (41%), Gaps = 46/343 (13%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  L ++N LI    ++G+  E   L +DM ++ + D D   +    N       + +A
Sbjct: 250 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI-DPDIFTYNSLINGFCMHDRLDKA 308

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            + F+ + +    P L T+N L+     SK  E   ++ R +   GL  D   YTTLI  
Sbjct: 309 KQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ- 367

Query: 137 CAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                    +F +                  G  D A  V  +M ++  P  PD +T   
Sbjct: 368 --------GLFHD------------------GDCDNAQKVFKQMVSDGVP--PDIMTYSI 399

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD----WEFACSVYDDM 252
           L+    N G++++A EV+  + K  IK    +YT  I    + G     W+  CS    +
Sbjct: 400 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS----L 455

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
           + KGV P+ V  + +I        ++ A+ +L++ K  G      +Y++L+ A     + 
Sbjct: 456 SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDK 515

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
             + EL   M+S +     ST+  +   L DG      +++LS
Sbjct: 516 AASAELIREMRSCRFVGDASTIGLVANMLHDGRLDKSFLDMLS 558



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 89/189 (47%), Gaps = 16/189 (8%)

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKL--KPTVSTMNALITALCDGDQLPKTMEV 353
           I  ++ L+ A +  K +   + L    K +KL  +P++ T+++L+   C G ++   + +
Sbjct: 42  IFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVAL 101

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
           +  M  +G  P+TIT++ L+      +     + L+ +  + G  PNLV +  ++ G+C 
Sbjct: 102 VDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCK 161

Query: 413 R-----------RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVE 460
           R           + E A+ +   V+ FN+    + + +    AL +++E    G  P V 
Sbjct: 162 RGDIDLAFNLLNKMEAAK-IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVV 220

Query: 461 VVSKVLGCL 469
             S ++ CL
Sbjct: 221 TYSSLISCL 229


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/414 (21%), Positives = 181/414 (43%), Gaps = 50/414 (12%)

Query: 43  ECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNM 97
           + +DLL  M + KG   +D V +    N    +  + +A+  F  +    P+P + T++ 
Sbjct: 188 QALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSS 247

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFE-----N 149
           ++S  + ++  + A QV   + + G+  DC +YT+L+     SGK      +F+      
Sbjct: 248 IISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHG 307

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V+PD V + AL+    ++G    A  +   +    H   PD  T G L+   A  G +  
Sbjct: 308 VEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHK--PDSTTYGTLLHGYATEGALVE 365

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
             ++  ++ K  ++    ++ + +   ++    + A  V+ +M ++G+ PD V    ++D
Sbjct: 366 MHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLD 425

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL----------- 318
               AG+V+ A       K++G++  I+ +++L+        W K  EL           
Sbjct: 426 ILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICL 485

Query: 319 ------------------------YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
                                   ++ M  I ++P  +T N LI   C   ++ + M++L
Sbjct: 486 DTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLL 545

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             M   G+ P+ +TY+ ++    +   +E GL LL +    GV P +V ++ ++
Sbjct: 546 GVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLL 599



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/366 (21%), Positives = 158/366 (43%), Gaps = 54/366 (14%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKAD------------------------------ 126
           +L  +C   + S+    VLR + E G K D                              
Sbjct: 140 LLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADH 199

Query: 127 ---CKL----YTTLITTCAKSGKVD---AMFENV-----KPDRVVFNALITACGQSGAVD 171
              C L    YTT+I    + G++D   ++F+ +      PD V ++++I+A  ++ A+D
Sbjct: 200 KGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMD 259

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
           +A  V   M    + V PD I   +L+    ++G+   A  ++K + ++ ++     YT 
Sbjct: 260 KATQVFTRMVK--NGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTA 317

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            ++   + G    A  ++D + K+G  PD      L+      G +    ++L     +G
Sbjct: 318 LMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKG 377

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           + +G   ++ +MGA +      +AL ++ +M+   L P +     ++  LC   ++   +
Sbjct: 378 MQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDAL 437

Query: 352 EVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              + +KS GL PN + ++ L   L  C++ D VE    L  +  + G+  + + F  I+
Sbjct: 438 SQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVE---ELAFEMIDRGICLDTIFFNAIM 494

Query: 409 G-MCSR 413
           G +C +
Sbjct: 495 GNLCKK 500



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 128/316 (40%), Gaps = 19/316 (6%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V   + +Y  L+    + G+ +E   + + + ++G    D   +    +   ++ A+ 
Sbjct: 306 HGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGH-KPDSTTYGTLLHGYATEGALV 364

Query: 79  EAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           E      L+    +      FNM+M   A     + A  V   +++ GL  D   Y T++
Sbjct: 365 EMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVL 424

Query: 135 TTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
                +G+VD           E + P+ VVF  LI         D+  ++  EM      
Sbjct: 425 DILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDR--G 482

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           +  D I   A+M      G+V  A+ ++ ++ +  I+     Y   I+     G  + A 
Sbjct: 483 ICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAM 542

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +   M   GV P +V  + +I+     G++E    +L+E   +G++ GI++Y  L+   
Sbjct: 543 KLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGL 602

Query: 307 SNAKNWQKALELYEHM 322
             A     A ELY  M
Sbjct: 603 FQAGRTVAAKELYLRM 618



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 140/332 (42%), Gaps = 22/332 (6%)

Query: 130 YTTLITTCAKSGKVDAMFENV--------KPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y  +I  C + G++D  F  V        +   ++F+ L+           A D++    
Sbjct: 102 YGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSPLLKGLCDRRRTSDAMDIVLRRM 161

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI--HKYNIKGTPEVYTIAINCCSQT 239
            E+    PD  +   L+K   +     +A ++  ++  HK         YT  IN   + 
Sbjct: 162 PELG-CKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLRE 220

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G  + A S++D M  +G  PD V  S++I        ++ A ++       G+    I Y
Sbjct: 221 GQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMY 280

Query: 300 SSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           +SL+ G CS+ K  ++A+ +++ M    ++P V T  AL+  LC   +  +  ++   + 
Sbjct: 281 TSLVHGYCSSGKP-KEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLV 339

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
             G  P++ TY  LL     +  +     LL    + G+     +F  I+G     Y K 
Sbjct: 340 KRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGA----YAKH 395

Query: 419 RTLNEHVLSFNSGR-----PQIENKWTSLALM 445
             ++E +L F++ R     P I N  T L ++
Sbjct: 396 NKVDEALLVFSNMRQQGLNPDIVNYGTVLDIL 427



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 71/325 (21%), Positives = 135/325 (41%), Gaps = 18/325 (5%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H Y      G+  E I + + M R G+      Y A    +CK+ K+ +    F  LV 
Sbjct: 284 VHGY---CSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVK 340

Query: 89  ---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P  +T+  L+   A+         +L L+ + G++    ++  ++   AK  KVD 
Sbjct: 341 RGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDE 400

Query: 146 ---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
              +F N++     PD V +  ++     +G VD A      + +E   + P+ +    L
Sbjct: 401 ALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSE--GLAPNIVVFTTL 458

Query: 198 MKACANAGQVDRAREV-YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           +       + D+  E+ ++MI +     T     I  N C +    E A +++D M + G
Sbjct: 459 IHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIE-AKNLFDLMVRIG 517

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + P+    + LID     GK++ A ++L      G+    ++Y++++   S     +  L
Sbjct: 518 IEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGL 577

Query: 317 ELYEHMKSIKLKPTVSTMNALITAL 341
            L   M    + P + T   L+  L
Sbjct: 578 TLLREMDGKGVNPGIVTYEMLLQGL 602



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 15/199 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK-EAFRFFKLVPNPTLS 93
           L   GR+ + +     ++ +GL     V+      +C   K  K E   F  +     L 
Sbjct: 427 LCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLD 486

Query: 94  T--FNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----- 145
           T  FN +M ++C   +  E A  +  L+   G++ +   Y TLI      GK+D      
Sbjct: 487 TIFFNAIMGNLCKKGRVIE-AKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLL 545

Query: 146 ---MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
              +F  VKP  V +N +I    Q+G ++    +L EM+ +   V+P  +T   L++   
Sbjct: 546 GVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGK--GVNPGIVTYEMLLQGLF 603

Query: 203 NAGQVDRAREVYKMIHKYN 221
            AG+   A+E+Y  + K++
Sbjct: 604 QAGRTVAAKELYLRMIKWD 622


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 155/341 (45%), Gaps = 11/341 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           PTL   N LM     +      ++V   + EA +  D   YT +I    K G V      
Sbjct: 205 PTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMV 264

Query: 144 -DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
              M +  KP+   +NA I    Q+GAVD A +V   M  +   + PD  T   L+    
Sbjct: 265 LSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEK--GLGPDGHTYTLLVDGFC 322

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              +   A+ +++ +    +      YT  I+   + G+ E A  + D+M  +G+  + V
Sbjct: 323 KQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVV 382

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +A+I     AG++  A  +  E    GI     +Y+ L+     + +  KA EL   M
Sbjct: 383 TYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEM 442

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           K+ KL P+  T + LI+ LC    L K  EVL  M   G+ PN   Y  L+ A  ++   
Sbjct: 443 KARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRY 502

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKC-IIGMC-SRRYEKARTL 421
           E+ + LL     +GV+P+L  + C IIG+C +++ E+A+ L
Sbjct: 503 EMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKML 543



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/357 (23%), Positives = 157/357 (43%), Gaps = 15/357 (4%)

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           H +  +V K +  + E  +  K    P L T+N  +     +   + A +V +L+ E GL
Sbjct: 252 HCKVGDVIKGKMVLSEMEKECK----PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGL 307

Query: 124 KADCKLYTTLITTCAK---SGKVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAFD 175
             D   YT L+    K   S +   +FE+     + P+R  + ALI    + G ++ A  
Sbjct: 308 GPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALR 367

Query: 176 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
           +  EM      +  + +T  A++   A AG++ +A  ++  +    I+     Y + I+ 
Sbjct: 368 IKDEMIT--RGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDG 425

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
             ++ D   AC +  +M  + + P     S LI    H+  ++ A E+L +    G+   
Sbjct: 426 YLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPN 485

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           +  Y +L+ A      ++ A+EL + M +  + P +   N LI  LC   ++ +   +L 
Sbjct: 486 VFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLV 545

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           DM   G+ PN  TY   +    +  +++V           G++PN V++  +I G C
Sbjct: 546 DMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHC 602



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 147/329 (44%), Gaps = 13/329 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P L  +N L+     +K  E A  +L  + E G+K +   Y   I   +KSG++      
Sbjct: 519 PDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERY 578

Query: 144 --DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             D +   + P+ V++  LI      G    A      M  +   + PD     A++ + 
Sbjct: 579 FKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEK--GLIPDIRAYSAIIHSL 636

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           +  G+   A  V+    K  +     +Y   I+   + GD E A  +YD+M   G+ P+ 
Sbjct: 637 SKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNI 696

Query: 262 VFLSALIDFAGH--AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           V  + LI+  G+  +G +  AF++  E  ++GIS     Y  L+  C    N +KAL L+
Sbjct: 697 VVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLF 756

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
            H    K   ++S  N+LI + C   ++ +  E+  DM    L PN +TY+IL+ A  + 
Sbjct: 757 -HEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKA 815

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + +E    L    +   +IPN + +  ++
Sbjct: 816 EMMEEAEQLFLDMETRNIIPNTLTYTSLL 844



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 168/413 (40%), Gaps = 54/413 (13%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
            I++G I E + + ++M  +GL      Y+A    + K+ +  K    F +++     P 
Sbjct: 356 FIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPD 415

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------D 144
             T+N+L+     S D   A ++L  ++   L      Y+ LI+    S  +       D
Sbjct: 416 TWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLD 475

Query: 145 AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            M  N VKP+  ++  LI A  Q    + A ++L  M A  + V PD      L+     
Sbjct: 476 QMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIA--NGVLPDLFCYNCLIIGLCR 533

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           A +V+ A+ +   + +  IK     Y   IN  S++G+ + A   + DM   G++P+ V 
Sbjct: 534 AKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVI 593

Query: 264 LSALIDFAGHA-------------------------------------GKVEAAFEILQE 286
            + LI   GH                                      GK + A  +  +
Sbjct: 594 YTILI--KGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLK 651

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT--ALCDG 344
               G+   +  Y+SL+       + +KA +LY+ M    + P +   N LI     C  
Sbjct: 652 FLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKS 711

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
             L +  ++  +M S G+ P+   Y IL+  C ++ ++E  L L  +A++  V
Sbjct: 712 GNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSV 764



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 172/381 (45%), Gaps = 30/381 (7%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA----FRFFKLVPNPTLST 94
           G   E +   + M  KGL+   + Y A   ++ K+ K  KEA     +F K    P +  
Sbjct: 605 GNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKT-KEAMGVFLKFLKTGVVPDVFL 663

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA--KSGKVDAMFE---- 148
           +N L+S      D E A Q+   +   G+  +  +Y TLI      KSG +   F+    
Sbjct: 664 YNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDE 723

Query: 149 ----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                + PD  ++  LI  CG+ G +++A  +  E  A+   V        +L+ +    
Sbjct: 724 MISKGISPDGYIYCILIDGCGKEGNLEKALSLFHE--AQQKSVGSLS-AFNSLIDSFCKH 780

Query: 205 GQVDRAREVY-KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           G+V  ARE++  M+ K   K TP +  YTI I+   +    E A  ++ DM  + +IP+ 
Sbjct: 781 GKVIEARELFDDMVDK---KLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNT 837

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYE 320
           +  ++L+      G       + ++ + +GI+   I+Y  +  A C   K+ + AL+L  
Sbjct: 838 LTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLE-ALKLLN 896

Query: 321 H--MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
              ++ IKL+  V   +ALI  LC   Q+   +E+LS+M    L  ++ T + LL+   +
Sbjct: 897 KSLVEGIKLEDDV--FDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYK 954

Query: 379 KDDVEVGLMLLSQAKEDGVIP 399
             + +    +L   +  G +P
Sbjct: 955 SGNEDEASKVLGVMQRLGWVP 975



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 77/358 (21%), Positives = 153/358 (42%), Gaps = 19/358 (5%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           S  +HS   L + G+  E + +     + G++    +Y++     CK     K +  + +
Sbjct: 630 SAIIHS---LSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDE 686

Query: 86  LVPN---PTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           ++ N   P +  +N L++    C S   +E AF++   +   G+  D  +Y  LI  C K
Sbjct: 687 MLHNGINPNIVVYNTLINDYGYCKSGNLTE-AFKLFDEMISKGISPDGYIYCILIDGCGK 745

Query: 140 SGKVD---AMFENVKPDRV----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            G ++   ++F   +   V     FN+LI +  + G V  A ++  +M  +   + P+ +
Sbjct: 746 EGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDK--KLTPNIV 803

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+ A   A  ++ A +++  +   NI      YT  +   +Q G+     S++ DM
Sbjct: 804 TYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDM 863

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             +G+  D +    +       GK   A ++L ++  +GI +    + +L+      K  
Sbjct: 864 EARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQI 923

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
              LEL   M   +L  +  T N L+          +  +VL  M+ LG  P +++ +
Sbjct: 924 STVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSLT 981


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 191/438 (43%), Gaps = 23/438 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTL 92
           L  +GRI++ +++L++M  KG   +  +YH      C+S    + + R  + +     TL
Sbjct: 121 LCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRS-GGFRNSVRVLEAMHAKGCTL 179

Query: 93  STFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL---ITTCAKSGKVDAM 146
            T N   +L ++C      E A  +LR +   G +AD   Y  +   +    + G V+ +
Sbjct: 180 DTGNCNLVLNAICEQGCVDE-AVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEEL 238

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            +     +  P+ V FN LI    ++G  +R  +VLA+M+   H   PD      ++   
Sbjct: 239 MDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSE--HGCTPDIRMYATIIDGI 296

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G ++ A E+   +  Y +K     Y   +        W+ A  +  +M +K    D+
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDD 356

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L+DF    G V+   E+L++  + G    +I+Y++++          +A+ L + 
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S   KP   +   ++  LC   +     E++S M   G  PN +T++ L+    +K  
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNEHVLSFNSGRPQIENK 438
           VE  + LL Q   +G  P+L+ +  +I   G   +  E    LN  V   N G       
Sbjct: 477 VEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMV---NKGISPNTII 533

Query: 439 WTSLALMVYREAIVAGTI 456
           ++S+A  + RE  V   I
Sbjct: 534 YSSIACALSREGRVNKVI 551



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/412 (22%), Positives = 179/412 (43%), Gaps = 19/412 (4%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D +  + ++N LI    R G      ++L  M   G     ++Y      +CK +  ++ 
Sbjct: 246 DCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICK-EGHLEV 304

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A      +P+    P +  +N ++    S++  + A ++L  + +     D   +  L+ 
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVD 364

Query: 136 TCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              ++G VD + E ++        PD + +  +I    + G +D A  +L  M++     
Sbjct: 365 FFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSS--CGC 422

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P+ ++   ++K   +AG+   A E+   + +      P  +   IN   + G  E A  
Sbjct: 423 KPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIE 482

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +   M   G  PD +  S +ID  G AGK E A E+L    N+GIS   I YSS+  A S
Sbjct: 483 LLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALS 542

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                 K +++++++K   ++      NA+I++LC   +  + ++  + M S G  PN  
Sbjct: 543 REGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNES 602

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
           TY++L+     +   +    LLS+    G +   +M    I  C++   K +
Sbjct: 603 TYTMLIKGLASEGLAKEAQELLSELCSRGALRKHLMRHFGISNCTQENGKQK 654



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 104/456 (22%), Positives = 176/456 (38%), Gaps = 83/456 (18%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAF-RFFKLVPN 89
           N +  QG + E + LL  +   G       Y+A    +C +++   ++E      ++   
Sbjct: 189 NAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCA 248

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P + TFN L+     +   E   +VL  + E G   D ++Y T+I    K G ++     
Sbjct: 249 PNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEI 308

Query: 146 --------------------------------------MFENVKP-DRVVFNALITACGQ 166
                                                 MF+   P D V FN L+    Q
Sbjct: 309 LNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQ 368

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           +G VDR  ++L +M +  H   PD IT   ++      G +D A  + K +     K   
Sbjct: 369 NGLVDRVIELLEQMLS--HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNT 426

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             YTI +      G W  A  +   M ++G  P+ V  + LI+F    G VE A E+L++
Sbjct: 427 VSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQ 486

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               G S  +ISYS+++     A   ++ALEL                            
Sbjct: 487 MLVNGCSPDLISYSTVIDGLGKAGKTEEALEL---------------------------- 518

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
                  L+ M + G+ PNTI YS +  A  R+  V   + +    K+  +  + V++  
Sbjct: 519 -------LNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNA 571

Query: 407 IIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
           +I    +R+E  R ++      ++G    E+ +T L
Sbjct: 572 VISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTML 607



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 2/238 (0%)

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
           PV P+  T   +++     G++  A EV   +        P +Y + +    ++G +  +
Sbjct: 106 PVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNS 165

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             V + M  KG   D    + +++     G V+ A  +L++    G    I+SY++++  
Sbjct: 166 VRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKG 225

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
              AK W    EL + M  +   P + T N LI  LC      +  EVL+ M   G  P+
Sbjct: 226 LCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPD 285

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 421
              Y+ ++    ++  +EV   +L++    G+ PN+V +  ++ G+CS  R+++A  L
Sbjct: 286 IRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEEL 343


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 160/355 (45%), Gaps = 14/355 (3%)

Query: 82  RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +  KL   P + T N L++  C  ++ S+    V ++V E G K D   +TTLI      
Sbjct: 138 KMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMV-EMGYKPDTVTFTTLIHGLFLH 196

Query: 141 GK-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            K       +D M +   +PD V + A++    + G  D A ++L +M  E   ++ + +
Sbjct: 197 NKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKM--EAAKIEANVV 254

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
               ++ +       D A  ++  +    ++     Y+  I+C    G W  A  +  DM
Sbjct: 255 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDM 314

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            ++ + P+ V  SALID     GK+  A ++ +E   + I   I +YSSL+         
Sbjct: 315 IERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRL 374

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            +A ++ E M      P V T N LI   C   ++ K ME+  +M   GL  NT+TY+ L
Sbjct: 375 GEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTL 434

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
           +    +  D +   M+  Q    GV PN++ +  ++ G+C   +  KA  + E++
Sbjct: 435 IHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 489



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 112/259 (43%), Gaps = 5/259 (1%)

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D A  +   M A+  P  P  I    L+ A A   + D      + +    I      Y
Sbjct: 59  LDDAIGLFGVM-AQSRPF-PSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTY 116

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
            I INC  +      A ++   M K G  PD V L++L++   H  ++  A  ++ +   
Sbjct: 117 NILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVE 176

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            G     +++++L+          +A+ L + M     +P + T  A++  LC       
Sbjct: 177 MGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDL 236

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            + +L+ M++  +  N + YS ++ +  +    +  L L ++ +  GV PN++ +  +I 
Sbjct: 237 ALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS 296

Query: 410 -MCS--RRYEKARTLNEHV 425
            +C+  R  + +R L++ +
Sbjct: 297 CLCNYGRWSDASRLLSDMI 315



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 124/293 (42%), Gaps = 15/293 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G     ++LL  ME   +     +Y     ++CK +    +A   F  + N   
Sbjct: 226 NGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHE-DDALNLFTEMENKGV 284

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DA 145
            P + T++ L+S   +      A ++L  + E  +  +   ++ LI    K GK+   + 
Sbjct: 285 RPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEK 344

Query: 146 MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           ++E     ++ P+   +++LI        +  A  +L  M  +     P+ +T   L+  
Sbjct: 345 LYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRK--DCLPNVVTYNTLING 402

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              A +VD+  E+++ + +  + G    YT  I+   Q  D + A  V+  M   GV P+
Sbjct: 403 FCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 462

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            +  + L+D     GK+  A  + +  +   +   I +Y+ ++     A  W+
Sbjct: 463 ILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWK 515


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 108/463 (23%), Positives = 206/463 (44%), Gaps = 28/463 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLV--QEAGLKADCKLYTTLITTCAKSGK----- 142
           P    +N  +  C ++ D + A  +LR +   E     D   Y  +I    +SGK     
Sbjct: 156 PDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDAL 215

Query: 143 --VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
              D M +  V P+++ +N +I    + G ++  F +  +M  +     P+ +T   L+ 
Sbjct: 216 KVFDEMVDRGVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRK--PNVVTYNVLLS 273

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               AG++D  R +   +  Y++      Y+I  +  ++TGD     S++ +  KKGVI 
Sbjct: 274 GLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVII 333

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
                S L++     GKV  A ++L+   + G+      Y++L+      ++ Q A  ++
Sbjct: 334 GAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIF 393

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E MKS  ++P   T NALI  LC  + + +  +++ +M+  G+ P+  T++ L+ A  R 
Sbjct: 394 EQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRA 453

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNEHVLS--------F 428
             +E    +LS  ++ G+  N++ F  ++   C   +  E    L++ +          +
Sbjct: 454 GQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVY 513

Query: 429 NS-GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL-- 485
           NS     IE+  T  A ++  +   +G   ++   + +L  L      D  E L+ NL  
Sbjct: 514 NSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTN 573

Query: 486 -GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 527
            G+  D +  + + S     G+ D RA  LL+E   + I P +
Sbjct: 574 QGLRPDVVSYNTIISACCNKGDTD-RALELLQEMHKYDIRPTL 615



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 168/364 (46%), Gaps = 25/364 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA------IKEA 80
           +YN L+    R GR+ E   L+++M    +L     Y   F  + ++  +        E+
Sbjct: 267 TYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGES 326

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +   ++   T S   +L  +C   K ++ A QVL ++   GL     +Y TLI    + 
Sbjct: 327 LKKGVIIGAYTCSI--LLNGLCKDGKVAK-AEQVLEMLVHTGLVPTTAIYNTLINGYCQV 383

Query: 141 GKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
             +   F         +++PD + +NALI    +   +  A D++ EM  E   VDP   
Sbjct: 384 RDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEM--EKSGVDPSVE 441

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+ A   AGQ+++   V   +    IK     +   +    + G    A ++ DDM
Sbjct: 442 TFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDM 501

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKN 311
             K V+P+    +++ID    +G  E AF ++++ K+ G+S  I +Y+ L+ G C N++ 
Sbjct: 502 IHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQ- 560

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +A EL  ++ +  L+P V + N +I+A C+     + +E+L +M    + P   TY  
Sbjct: 561 IDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHP 620

Query: 372 LLVA 375
           LL A
Sbjct: 621 LLSA 624



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 150/322 (46%), Gaps = 15/322 (4%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           ++ L R G     + L  +  +KG++            +CK  K  K       LV    
Sbjct: 307 FDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGL 366

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----D 144
            PT + +N L++     +D +GAF +   ++   ++ D   Y  LI    K   +    D
Sbjct: 367 VPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAED 426

Query: 145 AMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            + E     V P    FN LI A G++G +++ F VL++M  +   +  + I+ G+++KA
Sbjct: 427 LVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDK--GIKSNVISFGSVVKA 484

Query: 201 CANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               G++  A  +   MIHK ++    +VY   I+   ++G  E A  + + M   GV  
Sbjct: 485 FCKNGKIPEAVAILDDMIHK-DVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSA 543

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
                + L+       +++ A E++    NQG+   ++SY++++ AC N  +  +ALEL 
Sbjct: 544 SIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELL 603

Query: 320 EHMKSIKLKPTVSTMNALITAL 341
           + M    ++PT+ T + L++AL
Sbjct: 604 QEMHKYDIRPTLRTYHPLLSAL 625



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 88/419 (21%), Positives = 177/419 (42%), Gaps = 25/419 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-----QKAIKEAF 81
           +YN +I    + G +     L + M + G       Y+     +C++      +A+ +  
Sbjct: 232 TYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEM 291

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
             + ++P+    T+++L      + DS     +     + G+       + L+    K G
Sbjct: 292 TSYSMLPDGF--TYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDG 349

Query: 142 KVDAMFENV---------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           KV A  E V          P   ++N LI    Q   +  AF +  +M +    + PDHI
Sbjct: 350 KV-AKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSR--HIRPDHI 406

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T  AL+        +  A ++   + K  +  + E +   I+   + G  E   +V  DM
Sbjct: 407 TYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDM 466

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             KG+  + +   +++      GK+  A  IL +  ++ +      Y+S++ A   +   
Sbjct: 467 QDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGT 526

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           ++A  L E MKS  +  ++ T N L+  LC   Q+ +  E++ ++ + GL P+ ++Y+ +
Sbjct: 527 EQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTI 586

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM--CSRRYEKARTLNEHVLSFN 429
           + AC  K D +  L LL +  +  + P L  +  ++     + R      L +H++  N
Sbjct: 587 ISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKN 645



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 119/277 (42%), Gaps = 50/277 (18%)

Query: 32  YNRLIR---QGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA----FRF 83
           YN LI    Q R +     + E M+ + +      Y+A    +CK  + I EA       
Sbjct: 373 YNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCK-MEMITEAEDLVMEM 431

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K   +P++ TFN L+     +   E  F VL  +Q+ G+K++   + +++    K+GK+
Sbjct: 432 EKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKI 491

Query: 144 --------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEM--------------- 180
                   D + ++V P+  V+N++I A  +SG  ++AF ++ +M               
Sbjct: 492 PEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLL 551

Query: 181 ------NAEVHPVD------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
                 N+++   +            PD ++   ++ AC N G  DRA E+ + +HKY+I
Sbjct: 552 LKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDI 611

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           + T   Y   ++     G       +Y  M  K V P
Sbjct: 612 RPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEP 648


>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
 gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
          Length = 651

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 174/364 (47%), Gaps = 27/364 (7%)

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           + +A  EA R   + PN  +  +  L+   A ++D EGA      +   G++ +  ++ +
Sbjct: 149 AARATFEAMRASHIKPN--VHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCS 206

Query: 133 LITTCAKSGKVDAM--------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE- 183
           +I+  A +G  +A          EN+ P  +V+N+++ A  Q+G ++    +LA+M  E 
Sbjct: 207 IISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEG 266

Query: 184 ---------------VHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                              D +  ++    +K    AG + +A ++ + + K+ +     
Sbjct: 267 FQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKM 326

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           +Y + ++  ++ GD+  A  V++DM   G+ PD V  + L+     AG+++ A  +L+  
Sbjct: 327 IYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGRMDKALGVLENI 386

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           +   +   I +Y+S++       N QKALE+++ +K+  L+P V + N+L++ L    Q+
Sbjct: 387 EANRLLPTIETYTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQM 446

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
                +L++M + G+ P+   Y+ L     R  DVE    +  + K++ +  ++V +  +
Sbjct: 447 ENARLMLNEMLANGVVPSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYGAL 506

Query: 408 IGMC 411
           +  C
Sbjct: 507 LKAC 510



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 163/351 (46%), Gaps = 29/351 (8%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+++  P L  + +L+   A   D   A      ++ + +K +  +YT+LI   A++  +
Sbjct: 123 FQVIDKPVLREYGLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDM 182

Query: 144 DA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +         + + ++ +  VF ++I+    +G  + A     +  AE   + P  I   
Sbjct: 183 EGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAE--NLVPGGIVYN 240

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN----------CCS-------- 237
           ++++A   AG ++    +   + +   +G   +YT  +N          C S        
Sbjct: 241 SIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKVS 300

Query: 238 -QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            Q G+   A  + ++M K GV P+++  + ++D     G   AAF++ ++  + G+   I
Sbjct: 301 PQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDI 360

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           + Y+ L+ A   A    KAL + E++++ +L PT+ T  +++     G  + K +EV   
Sbjct: 361 VIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDR 420

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
           +K+ GL P  ++Y+ LL    +   +E   ++L++   +GV+P+  ++  +
Sbjct: 421 IKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTAL 471



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 97/423 (22%), Positives = 182/423 (43%), Gaps = 37/423 (8%)

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           E F+   LVP   +  +N ++     + + E    +L  ++E G + +  LYTT++   A
Sbjct: 225 EKFKAENLVPGGIV--YNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNGFA 282

Query: 139 K-----------------------SGKVDAMFE----NVKPDRVVFNALITACGQSGAVD 171
           +                       +  +D + E     V P+++++  ++    + G   
Sbjct: 283 EIRDEEKCLSFFHRLKVSPQAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFT 342

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
            AF V  +M +    + PD +    L+ A   AG++D+A  V + I    +  T E YT 
Sbjct: 343 AAFKVWEDMVSA--GLKPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTS 400

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            ++   + G+ + A  V+D +   G+ P  V  ++L+     A ++E A  +L E    G
Sbjct: 401 ILDGYVKGGNIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANG 460

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           +      Y++L    +   + +KA  +++ MK   L   +    AL+ A C+   +    
Sbjct: 461 VVPSERIYTALTEGYARTGDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAA 520

Query: 352 EVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
           EV   +   GL  N ITY  +L  A  R   VE    L+S  + DG  P+ +++  +I  
Sbjct: 521 EVFQQITDAGLKHNQITYCTMLDGAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINA 580

Query: 411 --CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGC 468
              S R+E    L   ++  +S + + +    +  + VY +   AG IP  E + + L  
Sbjct: 581 YGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQ---AGFIPRAEELFQGLAR 637

Query: 469 LQL 471
           L+L
Sbjct: 638 LKL 640



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 158/353 (44%), Gaps = 19/353 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           + G +++ +D+LE+M++ G+   +K+ +A   +          AF+ ++ + +    P +
Sbjct: 302 QAGNMAKALDILEEMDKHGV-SPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDI 360

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---- 148
             +N+L+     +   + A  VL  ++   L    + YT+++    K G +    E    
Sbjct: 361 VIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALEVFDR 420

Query: 149 ----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                ++P  V +N+L++   ++  ++ A  +L EM A  + V P      AL +  A  
Sbjct: 421 IKTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLA--NGVVPSERIYTALTEGYART 478

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G V++A  V++ + K N+      Y   +  C  +G    A  V+  +T  G+  +++  
Sbjct: 479 GDVEKAFGVFQRMKKENLAIDIVAYGALLKACCNSGAMHGAAEVFQQITDAGLKHNQITY 538

Query: 265 SALIDFA-GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM- 322
             ++D A   AG+VE A E++   +  G     + Y+SL+ A   +   +    L   M 
Sbjct: 539 CTMLDGAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHEDMEALLAKMV 598

Query: 323 --KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
              S + KP + T N LI        +P+  E+   +  L L P+  T++ L+
Sbjct: 599 KSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPDATTWTALM 651



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 126/308 (40%), Gaps = 35/308 (11%)

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           G L+   A  G    AR  ++ +   +IK    +YT  I+  ++  D E A +  ++M  
Sbjct: 135 GLLVDFYARHGDKVAARATFEAMRASHIKPNVHIYTSLIHAYAEARDMEGAVACTEEMLS 194

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           +G+  +E    ++I     AG  EAA    ++ K + +  G I Y+S++ A   A N + 
Sbjct: 195 QGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMET 254

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCD-------------------GDQLPKTMEVLS 355
              L   M+    +  +     ++    +                      + K +++L 
Sbjct: 255 VEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKVSPQAGNMAKALDILE 314

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SR 413
           +M   G+ PN + Y++++    R  D      +       G+ P++V++  ++   C + 
Sbjct: 315 EMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAG 374

Query: 414 RYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEV 461
           R +KA  + E++ + N   P IE  +TS+            AL V+     AG  P V  
Sbjct: 375 RMDKALGVLENIEA-NRLLPTIET-YTSILDGYVKGGNIQKALEVFDRIKTAGLRPGVVS 432

Query: 462 VSKVLGCL 469
            + +L  L
Sbjct: 433 YNSLLSGL 440


>gi|225446845|ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Vitis vinifera]
          Length = 844

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 156/329 (47%), Gaps = 11/329 (3%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF----- 147
           +T+N L+++  +      AF+V   ++ AG   D   Y  +I + AKSG++DA F     
Sbjct: 285 ATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQE 344

Query: 148 ---ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
              +N++P  +VF +L+ + G++G +D +  V  EM      + P      +L+++   A
Sbjct: 345 MKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQG--FGLRPSATMYVSLIESFVKA 402

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G+++ A  ++  + K   +    +YT+ +   +++G  E A SV+ DM K G +P     
Sbjct: 403 GKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTY 462

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           S L++    +G+V++A ++     N G+  G+ +Y++L+   +N K    A ++   MK+
Sbjct: 463 SCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKA 522

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
           +     VS  + L+  + DG  +   +  L  M S G+  N      L  +C +    E 
Sbjct: 523 MGFSVDVSASDVLMVYIKDG-SVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYES 581

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
              LL          +L+++  I+    R
Sbjct: 582 AKPLLETYVNSAAKVDLILYTSILAHLVR 610



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 158/338 (46%), Gaps = 13/338 (3%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMFENVKP 152
           N ++   A ++  E AF   + VQ++G K D   Y +LIT     G   K   ++E+++ 
Sbjct: 253 NQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEA 312

Query: 153 -----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
                D   +  +I +  +SG +D AF +  EM  +   + P  +   +L+ +   AG++
Sbjct: 313 AGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEK--NLRPSFLVFASLVDSMGKAGRL 370

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D + +VY  +  + ++ +  +Y   I    + G  E A  ++D+M K G  P+    + +
Sbjct: 371 DTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMV 430

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ++    +GK+E A  +  + +  G      +YS L+   S +     A++LY  M +  L
Sbjct: 431 VESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGL 490

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           +P +ST  AL+T L +   +    +VL +MK++G   +     +L+V   +   V++ L 
Sbjct: 491 RPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSASDVLMVYI-KDGSVDLALR 549

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNE 423
            L      G+  N  + + +   C +   YE A+ L E
Sbjct: 550 WLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLLE 587



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 99/221 (44%)

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           I    +++  A A +++ A   +K +     K     Y   I      G    A  VY+ 
Sbjct: 250 IACNQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYES 309

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M   G + D      +I     +G+++AAF++ QE K + +    + ++SL+ +   A  
Sbjct: 310 MEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGR 369

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
              ++++Y  M+   L+P+ +   +LI +     +L   + +  +MK  G  PN   Y++
Sbjct: 370 LDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTM 429

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           ++ +  +   +E  + + S  ++ G +P    + C++ M S
Sbjct: 430 VVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHS 470


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 153/323 (47%), Gaps = 11/323 (3%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT------TCAKSGKVDAMFENV 150
           +L   C + K +E  +  L  + + G   D  L T LI          K+ +V  + E  
Sbjct: 75  LLNRSCRAGKYNESLY-FLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERY 133

Query: 151 -KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
            KPD   +NALI+   ++  ++ A  VL  M +      PD +T   ++ +  + G++D 
Sbjct: 134 GKPDVFAYNALISGFIKANQLENANRVLDRMKS--RGFLPDVVTYNIMIGSFCSRGKLDL 191

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A E+++ + K N + T   YTI I      G  + A  + D+M  KG+ PD +  +A+I 
Sbjct: 192 ALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIR 251

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                  V+ AFE+L+   ++G    II+Y+ L+    +   W +  +L   M SI  KP
Sbjct: 252 GMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKP 311

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            V T + LI  LC   ++ + + +L  MK  GL P+   Y  L+    R+  +++    L
Sbjct: 312 NVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFL 371

Query: 390 SQAKEDGVIPNLVMFKCII-GMC 411
                DG +P++V +  I+ G+C
Sbjct: 372 EYMISDGCLPDIVNYNTIMAGLC 394



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 160/392 (40%), Gaps = 14/392 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           NR  R G+ +E +  LE M  KG    D +   +      + + I +A R  +++     
Sbjct: 77  NRSCRAGKYNESLYFLECMVDKGYTP-DVILCTKLIKGFFNSRNIGKATRVMEILERYGK 135

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P +  +N L+S    +   E A +VL  ++  G   D   Y  +I +    GK+D   E 
Sbjct: 136 PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEI 195

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  N +P  + +  LI A    G +D A  +L EM ++   ++PD +T  A+++  
Sbjct: 196 FEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSK--GLEPDTLTYNAIIRGM 253

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                VD+A E+ + +     K     Y I +      G W     +  +M   G  P+ 
Sbjct: 254 CKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNV 313

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  S LI      GKVE A  +L+  K +G+      Y  L+           A E  E+
Sbjct: 314 VTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEY 373

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S    P +   N ++  LC   +  + +EV   +  +G  PN  +Y+ L  A     D
Sbjct: 374 MISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGD 433

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
               L ++ +    G+ P+ + +  +I    R
Sbjct: 434 RYRALEMILKLLNQGIDPDEITYNSLISCLCR 465



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 150/351 (42%), Gaps = 52/351 (14%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           I  G I   + LL++M  KGL      Y+A    +CK +  + +AF   + + +    P 
Sbjct: 219 ILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCK-EMMVDKAFELLRSLSSRGCKPD 277

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD------ 144
           + T+N+L+ ++ +  K SEG   +  ++   G K +   ++ LI T  + GKV+      
Sbjct: 278 IITYNILLRTLLSRGKWSEGEKLISEMIS-IGCKPNVVTHSILIGTLCRDGKVEEAVNLL 336

Query: 145 -AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
            +M E  +KPD   ++ LI    + G +D A + L  M ++     PD +    +M    
Sbjct: 337 RSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISD--GCLPDIVNYNTIMAGLC 394

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G+ D+A EV++ + +         Y    +    +GD   A  +   +  +G+ PDE+
Sbjct: 395 RTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEI 454

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             ++LI      G V+ A E+L +                                   M
Sbjct: 455 TYNSLISCLCRDGMVDEAIELLVD-----------------------------------M 479

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +S + +P V + N ++  LC  ++    +EVL+ M   G  PN  TY +L+
Sbjct: 480 QSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLI 530


>gi|298711148|emb|CBJ32373.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 962

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 155/332 (46%), Gaps = 20/332 (6%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN---- 149
           T+   M+ C  +     A   L  ++E G+  +   Y T+I  CA  G+ +  + N    
Sbjct: 269 TYCAAMNACKEAGKWMQAAAFLPRMREDGVPPNTIAYNTVIGACAFFGRPNKAWNNNRET 328

Query: 150 ---VKPDRVVFN---ALITACGQ-SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
              ++P     N    L  A  + S A D A  ++ EM  E   V+PD IT G+LM A +
Sbjct: 329 SSFLRPTSTRENKGRGLSPAQAEASDAGDFALGLMEEMKRE--GVEPDIITYGSLMSALS 386

Query: 203 NAG--QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIP 259
             G    D   E+++ + K  +K     Y  AI      GDWE A  +   M K+ GV P
Sbjct: 387 PRGLAGADIVLELFETLAKSGLKPNSITYVSAIRAYGDKGDWERAEQMLVGMQKEHGVEP 446

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    SA++    + G+ + A E L E +  G+S   + Y++ +GAC     W+KAL+  
Sbjct: 447 NRFCYSAVVKALANGGQWKRALETLDEMRECGLSADPVVYTAAIGACEKFGQWEKALDTL 506

Query: 320 EHMKSIKLKPTVSTM---NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
             + S K  P  S M   NA I+AL    Q+    ++++ MK+ GL P+  TY+ ++ A 
Sbjct: 507 SKLVSEK-PPMRSLMWGYNAAISALGKAKQMEGIKDLVATMKASGLKPDEYTYAAMMRAS 565

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                 E    +L + ++ GV PN V++  +I
Sbjct: 566 GIDGSWEESWSMLVEMEQAGVRPNRVVYNTLI 597



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 173/381 (45%), Gaps = 18/381 (4%)

Query: 44  CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA---FRFFKLVPN----PTLSTFN 96
            + L+E+M+R+G+ + D + +    +   S + +  A      F+ +      P   T+ 
Sbjct: 359 ALGLMEEMKREGV-EPDIITYGSLMSAL-SPRGLAGADIVLELFETLAKSGLKPNSITYV 416

Query: 97  MLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGK-------VDAMFE 148
             +       D E A Q+L  +Q E G++ +   Y+ ++   A  G+       +D M E
Sbjct: 417 SAIRAYGDKGDWERAEQMLVGMQKEHGVEPNRFCYSAVVKALANGGQWKRALETLDEMRE 476

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             +  D VV+ A I AC + G  ++A D L+++ +E  P+        A + A   A Q+
Sbjct: 477 CGLSADPVVYTAAIGACEKFGQWEKALDTLSKLVSEKPPMRSLMWGYNAAISALGKAKQM 536

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           +  +++   +    +K     Y   +      G WE + S+  +M + GV P+ V  + L
Sbjct: 537 EGIKDLVATMKASGLKPDEYTYAAMMRASGIDGSWEESWSMLVEMEQAGVRPNRVVYNTL 596

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I       ++E A +IL   +  G+   + +Y+++M  C    +W++A  L   M+S  +
Sbjct: 597 IASVLKGEQMEKADDILNRMREGGVPPDVTTYTTIMSGCKRESDWRRAEALLSEMESFGV 656

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           KP   T+ A++    D  ++ + + +     + G+  + I ++ L+    +KDD E  L 
Sbjct: 657 KPNSRTLTAVLKVYGDAGEVERALALFEQYDASGMVMDVICFNTLMGPVLKKDDPETVLE 716

Query: 388 LLSQAKEDGVIPNLVMFKCII 408
           L S+ +  GV P+ +    ++
Sbjct: 717 LFSRMESRGVEPDSLTMSLVL 737



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/449 (22%), Positives = 181/449 (40%), Gaps = 64/449 (14%)

Query: 21  YAHDVSEQLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYH------ARFFNV 70
           +A+DV    ++Y    N     G+  +    L  M   G+      Y+      A F   
Sbjct: 259 FANDVPRDEYTYCAAMNACKEAGKWMQAAAFLPRMREDGVPPNTIAYNTVIGACAFFGRP 318

Query: 71  CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKADC 127
            K+    +E   F +  P  T       +S   +     G F  L L++E    G++ D 
Sbjct: 319 NKAWNNNRETSSFLR--PTSTRENKGRGLSPAQAEASDAGDF-ALGLMEEMKREGVEPDI 375

Query: 128 KLYTTLITTCAKSGKVDA-----MFENV-----KPDRVVFNALITACGQSGAVDRAFDVL 177
             Y +L++  +  G   A     +FE +     KP+ + + + I A G  G  +RA  +L
Sbjct: 376 ITYGSLMSALSPRGLAGADIVLELFETLAKSGLKPNSITYVSAIRAYGDKGDWERAEQML 435

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
             M  E H V+P+     A++KA AN GQ  RA E    + +  +   P VYT AI  C 
Sbjct: 436 VGMQKE-HGVEPNRFCYSAVVKALANGGQWKRALETLDEMRECGLSADPVVYTAAIGACE 494

Query: 238 QTGDWEFACSVYDD-------------------------------------MTKKGVIPD 260
           + G WE A                                           M   G+ PD
Sbjct: 495 KFGQWEKALDTLSKLVSEKPPMRSLMWGYNAAISALGKAKQMEGIKDLVATMKASGLKPD 554

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           E   +A++  +G  G  E ++ +L E +  G+    + Y++L+ +    +  +KA ++  
Sbjct: 555 EYTYAAMMRASGIDGSWEESWSMLVEMEQAGVRPNRVVYNTLIASVLKGEQMEKADDILN 614

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+   + P V+T   +++         +   +LS+M+S G+ PN+ T + +L       
Sbjct: 615 RMREGGVPPDVTTYTTIMSGCKRESDWRRAEALLSEMESFGVKPNSRTLTAVLKVYGDAG 674

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           +VE  L L  Q    G++ +++ F  ++G
Sbjct: 675 EVERALALFEQYDASGMVMDVICFNTLMG 703



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/367 (19%), Positives = 146/367 (39%), Gaps = 82/367 (22%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P    ++ ++   A+    + A + L  ++E GL AD  +YT  I  C K G+ +   + 
Sbjct: 446 PNRFCYSAVVKALANGGQWKRALETLDEMRECGLSADPVVYTAAIGACEKFGQWEKALDT 505

Query: 150 V---------------------------------------------KPDRVVFNALITAC 164
           +                                             KPD   + A++ A 
Sbjct: 506 LSKLVSEKPPMRSLMWGYNAAISALGKAKQMEGIKDLVATMKASGLKPDEYTYAAMMRAS 565

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
           G  G+ + ++ +L EM  E   V P+ +    L+ +     Q+++A ++   + +  +  
Sbjct: 566 GIDGSWEESWSMLVEM--EQAGVRPNRVVYNTLIASVLKGEQMEKADDILNRMREGGVPP 623

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
               YT  ++ C +  DW  A ++  +M   GV P+   L+A++   G AG+VE A  + 
Sbjct: 624 DVTTYTTIMSGCKRESDWRRAEALLSEMESFGVKPNSRTLTAVLKVYGDAGEVERALALF 683

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
           ++    G+ + +I +++LMG      + +  LEL+  M+                     
Sbjct: 684 EQYDASGMVMDVICFNTLMGPVLKKDDPETVLELFSRME--------------------- 722

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
                         S G+ P+++T S++L A E+    E   +L+ + +E+G +  + ++
Sbjct: 723 --------------SRGVEPDSLTMSLVLRAAEQAGAAEWAWLLMEKMREEGGVIAMQVY 768

Query: 405 KCIIGMC 411
              I  C
Sbjct: 769 ADGIRAC 775



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 125/519 (24%), Positives = 210/519 (40%), Gaps = 99/519 (19%)

Query: 89  NPTLSTFNMLMSVCASSK--------------------DSEGAFQVLRLVQ----EAGLK 124
           +PT+ T+N+L++  A S+                    DS     V++ +Q     A ++
Sbjct: 157 HPTVFTYNLLIAALARSRRPHSEVLNLLDQMRCDGIKPDSYTYVGVVKGIQGPKKNAMMR 216

Query: 125 A---DCKL----------YTTLITTCAKSGK-------VDAMFENVKP-DRVVFNALITA 163
           A   D KL          Y+ +++  A  G        VD MF N  P D   + A + A
Sbjct: 217 AVLEDAKLELEGLDLSAVYSAVVSGYAVDGSWEDASALVDEMFANDVPRDEYTYCAAMNA 276

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA----REVYKMIHK 219
           C ++G   +A   L  M  +  P  P+ I    ++ ACA  G+ ++A    RE    +  
Sbjct: 277 CKEAGKWMQAAAFLPRMREDGVP--PNTIAYNTVIGACAFFGRPNKAWNNNRETSSFLRP 334

Query: 220 YNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278
            + +       + A    S  GD  FA  + ++M ++GV PD +   +L+      G   
Sbjct: 335 TSTRENKGRGLSPAQAEASDAGD--FALGLMEEMKREGVEPDIITYGSLMSALSPRGLAG 392

Query: 279 A--AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVSTMN 335
           A    E+ +     G+    I+Y S + A  +  +W++A ++   M K   ++P     +
Sbjct: 393 ADIVLELFETLAKSGLKPNSITYVSAIRAYGDKGDWERAEQMLVGMQKEHGVEPNRFCYS 452

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS----- 390
           A++ AL +G Q  + +E L +M+  GL  + + Y+  + ACE+    E  L  LS     
Sbjct: 453 AVVKALANGGQWKRALETLDEMRECGLSADPVVYTAAIGACEKFGQWEKALDTLSKLVSE 512

Query: 391 -------------------QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 431
                              +AK+   I +LV      G+    Y  A  +        SG
Sbjct: 513 KPPMRSLMWGYNAAISALGKAKQMEGIKDLVATMKASGLKPDEYTYAAMMRA------SG 566

Query: 432 RPQIENKW-TSLALMVYREAIVAGTIPTVEV----VSKVLGCLQLPYNADIRERLVENLG 486
              I+  W  S +++V  E   AG  P   V    ++ VL   Q+    DI  R+ E  G
Sbjct: 567 ---IDGSWEESWSMLVEMEQ--AGVRPNRVVYNTLIASVLKGEQMEKADDILNRMREG-G 620

Query: 487 VSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
           V  D    + + S      ++  RA +LL E  SFG+ P
Sbjct: 621 VPPDVTTYTTIMSGCKRESDWR-RAEALLSEMESFGVKP 658



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 171/389 (43%), Gaps = 41/389 (10%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++Y  ++R     G   E   +L +ME+ G+     VY+    +V K ++  K      +
Sbjct: 556 YTYAAMMRASGIDGSWEESWSMLVEMEQAGVRPNRVVYNTLIASVLKGEQMEKADDILNR 615

Query: 86  L----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +    VP P ++T+  +MS C    D   A  +L  ++  G+K + +  T ++     +G
Sbjct: 616 MREGGVP-PDVTTYTTIMSGCKRESDWRRAEALLSEMESFGVKPNSRTLTAVLKVYGDAG 674

Query: 142 KVD---AMFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +V+   A+FE         D + FN L+    +    +   ++ + M  E   V+PD +T
Sbjct: 675 EVERALALFEQYDASGMVMDVICFNTLMGPVLKKDDPETVLELFSRM--ESRGVEPDSLT 732

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAIN-CCSQT----GDWEFA 245
           +  +++A   AG  + A   + ++ K   +G     +VY   I  CC +T     D +  
Sbjct: 733 MSLVLRAAEQAGAAEWA---WLLMEKMREEGGVIAMQVYADGIRACCVKTRTIADDDDDD 789

Query: 246 CSVYDDMTKKGVIPDEVFLS-----ALIDFAGHAGKVEAAFEILQEAKN--QGISVGIIS 298
               D+   +GV  +E  +      A++D A  +  +  A  I  EA+   +G ++  + 
Sbjct: 790 DDGDDEDNGEGVESEEGLVESSLEEAILDNAADSTPLRRAMSIFIEARQVYEGENIARL- 848

Query: 299 YSSLMGACSN---AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           Y+ ++ AC+    A+    A  L + M+  K  P  ++     +AL       + +EVL 
Sbjct: 849 YAGILLACARDERAEGADAARNLLDEMRRSKFPPDKASFGPAASALASAGDWGEAIEVLK 908

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEV 384
           +  ++G  PN I Y  +  A  ++  ++V
Sbjct: 909 EGAAMGALPNNIAYEDIRAAAHQEGQLKV 937


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 160/336 (47%), Gaps = 15/336 (4%)

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           FR F     P   + N L+   A    ++G  +  + +  AG K     Y  +I    K 
Sbjct: 92  FRVF-----PKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKE 146

Query: 141 GKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G ++A   +FE +K     PD V +N++I   G+ G +D       EM +     +PD I
Sbjct: 147 GDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKS--MSCEPDVI 204

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T  +L+     +G++ +  E Y+ + +  +K     Y+  ++   +    + A   Y DM
Sbjct: 205 TYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDM 264

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            + G +P+E   ++L+D     G +  AF +  E    G+   +++Y++L+    +A+  
Sbjct: 265 RRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERM 324

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           ++A +L+  M +  + P +++ NALI        + + +E+L+++K  G+ P+ + Y   
Sbjct: 325 KEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTF 384

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +      + +E   +++++ +E+G+  N +++  ++
Sbjct: 385 IWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLM 420



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/272 (27%), Positives = 132/272 (48%), Gaps = 4/272 (1%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P   VF+AL +     G ++ A    ++M      V P   +   L+   A  G+ D  +
Sbjct: 61  PGFGVFDALFSVLIDLGMLEEATQCFSKMKR--FRVFPKTRSCNGLLHKFAKLGKTDGVK 118

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
             +K +     K T   Y I I+C  + GD E A  ++++M  +G+IPD V  +++ID  
Sbjct: 119 RFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGY 178

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
           G  G+++      +E K+      +I+Y+SL+     +    K LE Y  MK   LKP V
Sbjct: 179 GKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNV 238

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            + + L+ A C  D + + ++   DM+ +G  PN  TY+ L+ A  +  ++     L ++
Sbjct: 239 VSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANE 298

Query: 392 AKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
             E GV  N+V +  +I G+C + R ++A  L
Sbjct: 299 MLEVGVEWNVVTYTALIDGLCDAERMKEAEKL 330



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 95/454 (20%), Positives = 193/454 (42%), Gaps = 65/454 (14%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    ++G I     L E+M+ +GL+     Y++      K  + + +   FF+ 
Sbjct: 135 TYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGR-LDDTVYFFEE 193

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + +    P + T+N L++  C S K  +G  +  R ++++GLK +   Y+TL+    K  
Sbjct: 194 MKSMSCEPDVITYNSLINCFCKSGKLPKG-LEFYREMKQSGLKPNVVSYSTLVDAFCKE- 251

Query: 142 KVDAMFENVK-----------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
             D M + +K           P+   + +L+ A  + G +  AF +  EM  EV  V+ +
Sbjct: 252 --DMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEM-LEV-GVEWN 307

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +T  AL+    +A ++  A +++  +    +      Y   I+   +  + + A  + +
Sbjct: 308 VVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLN 367

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           ++  +G+ PD +     I       K+EAA  ++ E +  GI    + Y++LM A   + 
Sbjct: 368 ELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSG 427

Query: 311 NWQKALELYEHMKSIK------------------------------------LKPTVSTM 334
           N  + L L E M+ +                                     L+P  +  
Sbjct: 428 NPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVY 487

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            A+I  LC  +Q+     +   M   GL P+   Y+ L+    ++ ++   L L  +  E
Sbjct: 488 TAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAE 547

Query: 395 DGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVL 426
            G+  +L+ +  ++   S+  + +KAR+  E ++
Sbjct: 548 IGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMI 581



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 141/304 (46%), Gaps = 16/304 (5%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---PTLST 94
           G +S+   L  +M   G+      Y A    +C +++ +KEA + F K+V     P L++
Sbjct: 287 GNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAER-MKEAEKLFGKMVTAGVIPNLAS 345

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MF 147
           +N L+     +K+ + A ++L  ++  G++ D  LY T I       K++A       M 
Sbjct: 346 YNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQ 405

Query: 148 EN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
           EN +K + +++  L+ A  +SG       +L EM    H V    +T   L+        
Sbjct: 406 ENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTV--VTFCVLIDGLCKNKL 463

Query: 207 VDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           V +A + + +M + + ++    VYT  I+   +    + A ++++ M ++G++PD    +
Sbjct: 464 VSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYT 523

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           +L+D     G +  A  +  +    G+ + +++Y+SL+   S     QKA    E M   
Sbjct: 524 SLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGE 583

Query: 326 KLKP 329
           ++ P
Sbjct: 584 EILP 587



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 80/388 (20%), Positives = 155/388 (39%), Gaps = 53/388 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRF 83
           +YN LI    + G++ + ++   +M++ GL      Y       CK    Q+AIK     
Sbjct: 205 TYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDM 264

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            ++   P   T+  L+       +   AF++   + E G++ +   YT LI     + ++
Sbjct: 265 RRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERM 324

Query: 144 ---DAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
              + +F       V P+   +NALI    ++  +DRA ++L E+      + PD +  G
Sbjct: 325 KEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGR--GIQPDLLLYG 382

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG--------------- 240
             +       +++ A+ V   + +  IK    +YT  ++   ++G               
Sbjct: 383 TFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQEL 442

Query: 241 DWEFA----CSVYDDMTKK-----------------GVIPDEVFLSALIDFAGHAGKVEA 279
           D E      C + D + K                  G+ P+    +A+ID      +V+A
Sbjct: 443 DHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKA 502

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A  + ++   +G+     +Y+SLM       N  +AL L + M  I +K  +    +L+ 
Sbjct: 503 ATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVW 562

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                +QL K    L +M    + P+ +
Sbjct: 563 GFSQCNQLQKARSFLEEMIGEEILPDEV 590


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 145/343 (42%), Gaps = 46/343 (13%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGK-------VDAMFEN-VKPDRVVFNALITACGQS 167
           RLV E  ++ D   Y TLI      G+       +D M      PD V +  L+ A  + 
Sbjct: 21  RLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKR 80

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
               +A  +L EM  +     PD +T   ++      G+VD A E  K +  Y  +    
Sbjct: 81  SGYKQAMKLLDEMRDK--GCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTV 138

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y I +        WE A  +  +M +KG  P+ V  + LI F    G VE A E+L++ 
Sbjct: 139 SYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI 198

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC----- 342
              G +   +SY+ L+ A    K   KA+   + M S    P + + N L+TALC     
Sbjct: 199 PKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEV 258

Query: 343 --------------------------DG----DQLPKTMEVLSDMKSLGLCPNTITYSIL 372
                                     DG     +  + +E+L++M S GL P+ ITYS +
Sbjct: 259 DVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTI 318

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
                R+D +E  +    + ++ G+ PN V++  II G+C RR
Sbjct: 319 AAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRR 361



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/396 (21%), Positives = 173/396 (43%), Gaps = 46/396 (11%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V    ++YN LIR    +GR +  + +L++M R+  +                       
Sbjct: 28  VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCV----------------------- 64

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                    P + T+ +L+         + A ++L  +++ G   D   Y  ++    + 
Sbjct: 65  ---------PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQE 115

Query: 141 GKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+VD   E +K        P+ V +N ++     +   + A +++ EM  +  P  P+ +
Sbjct: 116 GRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP--PNVV 173

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+      G V+ A EV + I KY        Y   ++   +    + A +  D M
Sbjct: 174 TFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLM 233

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             +G  PD V  + L+     +G+V+ A E+L + K++G +  +ISY++++   + A   
Sbjct: 234 VSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKT 293

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           ++ALEL   M S  L+P + T + +   LC  D++   +     ++ +G+ PNT+ Y+ +
Sbjct: 294 KEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAI 353

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ++   ++ +    + L +    +G +PN   +  +I
Sbjct: 354 ILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILI 389



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 124/265 (46%), Gaps = 11/265 (4%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           + +NA++     +G +D A  ++AEM     PV+PD  T   L++     G+   A  V 
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEM-----PVEPDAYTYNTLIRGLCGRGRTANALAVL 55

Query: 215 -KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            +M+ +   +  P+V  YTI +    +   ++ A  + D+M  KG  PD V  + +++  
Sbjct: 56  DEMLRR---RCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGI 112

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G+V+ A E L+   + G     +SY+ ++     A+ W+ A EL   M      P V
Sbjct: 113 CQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNV 172

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T N LI+ LC    +   +EVL  +   G  PN+++Y+ LL A  ++  ++  +  L  
Sbjct: 173 VTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDL 232

Query: 392 AKEDGVIPNLVMFKCIIGMCSRRYE 416
               G  P++V +  ++    R  E
Sbjct: 233 MVSRGCYPDIVSYNTLLTALCRSGE 257



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/256 (19%), Positives = 105/256 (41%), Gaps = 34/256 (13%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L R+G +   +++LE + + G       Y+      CK QK + +A  F  L+ +    P
Sbjct: 182 LCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCK-QKKMDKAMAFLDLMVSRGCYP 240

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
            + ++N L++    S + + A ++L  +++ G              CA            
Sbjct: 241 DIVSYNTLLTALCRSGEVDVAVELLHQLKDKG--------------CA------------ 274

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
            P  + +N +I    ++G    A ++L EM ++   + PD IT   +        +++ A
Sbjct: 275 -PVLISYNTVIDGLTKAGKTKEALELLNEMVSK--GLQPDIITYSTIAAGLCREDRIEDA 331

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
              +  +    I+    +Y   I    +  +   A  ++  M   G +P+E   + LI+ 
Sbjct: 332 IRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEG 391

Query: 271 AGHAGKVEAAFEILQE 286
             + G ++ A ++L E
Sbjct: 392 LAYEGLIKEARDLLDE 407


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 140/605 (23%), Positives = 229/605 (37%), Gaps = 111/605 (18%)

Query: 26  SEQLHS---YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           ++QLHS   YN L+    R   +     +LE+M   G    +        +  KS+K ++
Sbjct: 126 TKQLHSPEAYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRK-LR 184

Query: 79  EAF------RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           EAF      R FK    P  S +  L+   +++ +++    +LR +QE G +    L+TT
Sbjct: 185 EAFGVIETMRKFKF--RPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTT 242

Query: 133 LITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           LI   A+ G+VDA           +   D V++N  I   G+ G VD A+    E+ ++ 
Sbjct: 243 LICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQ- 301

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             + PD +T  +++     A +VD A E+++ +           Y   I      G +  
Sbjct: 302 -GLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNE 360

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A S+ +   +KG IP  +  + ++   G  GKVE A  IL EA     +  + SY+ L+ 
Sbjct: 361 AYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIL-EAMKMDAAPNLTSYNILID 419

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL---------- 354
               A   + AL++ + MK   L P + T+N +I  LC   +L +   +           
Sbjct: 420 MLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTP 479

Query: 355 -------------------------SDMKSLGLCPNTITYSILL---VACERKDD----- 381
                                      M   G  PN + Y+ L+     C RK+D     
Sbjct: 480 DSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIY 539

Query: 382 ---------------------------VEVGLMLLSQAKEDGVIPNLVMFKCII------ 408
                                      +E G  L  + K  G+ P++  +  +I      
Sbjct: 540 KEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKG 599

Query: 409 GMCSRRYEKARTLNEHVLSFNSGRPQI------ENKWTSLALMVYREAIVAGTIPTVEVV 462
           G     Y+    + E  L  ++    I      ++   + A  +  E    G  PTV   
Sbjct: 600 GFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTY 659

Query: 463 SKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAAS 520
             V+  L      D    L E     A  L      SLIDGFG+      A+ +LEE   
Sbjct: 660 GSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQ 719

Query: 521 FGIVP 525
            G+ P
Sbjct: 720 KGLTP 724



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 182/438 (41%), Gaps = 58/438 (13%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D +  L SYN LI    + G +   + + + M+  GL       +     +CK+Q+  + 
Sbjct: 406 DAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEA 465

Query: 80  AFRFFKL---VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F  L   V  P   TF  L+           A+ +   + ++G   +  +YT+LI  
Sbjct: 466 CSIFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRN 525

Query: 137 CAKSGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K G+ +         M     PD ++ N  +    ++G +++   +  E+ A+   + 
Sbjct: 526 FFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQ--GLT 583

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFA 245
           PD  +   L+      G    +++ YK+ ++   +G       Y I I+   ++G    A
Sbjct: 584 PDVRSYSILIHGLVKGG---FSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKA 640

Query: 246 CSVYDDMTKKGVIP------------------DEVFL-----------------SALIDF 270
             + ++M  KG+ P                  DE ++                 S+LID 
Sbjct: 641 YQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDG 700

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
            G  G+++ A+ IL+E   +G++    +++ L+ A   A+   +AL  +++MK++K  P 
Sbjct: 701 FGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPN 760

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
             T + ++  LC   +  K      +M+  GL PNTITY+ ++    R  +V     L  
Sbjct: 761 EVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFE 820

Query: 391 QAKEDGVIPNLVMFKCII 408
           + K  G IP+   +  +I
Sbjct: 821 RFKSSGGIPDSACYNAMI 838



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/461 (22%), Positives = 179/461 (38%), Gaps = 42/461 (9%)

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLI 134
           A+++A   F  +P P L     ++ V    KD   A    R V+    +    + Y  L+
Sbjct: 85  ALEDALNTFDEMPQPEL-----VVGVIRRLKDVRVALHYFRWVERKTKQLHSPEAYNALL 139

Query: 135 TTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
              A++  ++ + + ++        P       ++ +  +S  +  AF V+  M      
Sbjct: 140 MLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRK--FK 197

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             P +     L+ A + A + D    + + + +   + T  ++T  I   ++ G  + A 
Sbjct: 198 FRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAAL 257

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           S+ D+M       D V  +  ID  G  GKV+ A++   E K+QG+    ++++S++G  
Sbjct: 258 SLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVL 317

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
             A+   +A+EL+E + S K  P V   N +I       +  +   +L   K  G  P+ 
Sbjct: 318 CKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSV 377

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL 426
           I Y+ +L    RK  VE  L +L   K D   PNL  +  +I M  +  E          
Sbjct: 378 IAYNCILTCLGRKGKVEEALRILEAMKMDAA-PNLTSYNILIDMLCKAGE---------- 426

Query: 427 SFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLG 486
                           AL V      AG  P +  V+ ++  L      D    +   L 
Sbjct: 427 -------------LEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLD 473

Query: 487 VSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVP 525
                      CSLIDG G +     A+ L E+    G  P
Sbjct: 474 HKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTP 514



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 143/320 (44%), Gaps = 20/320 (6%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + ++++L+        S+  +++   ++E GL  D + Y  +I    KSGKV+  ++
Sbjct: 583 TPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQ 642

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    ++P  V + ++I    +   +D A+ +  E  A+   VD + +   +L+  
Sbjct: 643 LLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEE--AKSKAVDLNVVVYSSLIDG 700

Query: 201 CANAGQVDRAREVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGV 257
               G++D   E Y ++ +   KG TP  YT    ++   +  + + A   + +M     
Sbjct: 701 FGKVGRID---EAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKC 757

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P+EV  S +++      K   AF   QE + QG+    I+Y++++   +   N  +A +
Sbjct: 758 PPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKD 817

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L+E  KS    P  +  NA+I  L + ++      +  + +  G    + T  +LL A  
Sbjct: 818 LFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDALH 877

Query: 378 RKDDVE----VGLMLLSQAK 393
           + D +E    VG +L   AK
Sbjct: 878 KADCLEQAAIVGAVLREMAK 897


>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 727

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 176/391 (45%), Gaps = 21/391 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   + G++ + ++  ++M+ +G+  +++  ++   +          AF  F+ +     
Sbjct: 309 NLYTKLGKMMKALEFCKEMKAQGI-TLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEAGI 367

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T+N+L+     S+    A Q+L  ++  G     + Y T+I    K+G V   ++
Sbjct: 368 EPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYK 427

Query: 149 NV--------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            V        +P+   +N ++    Q G +DRA  V+ EM  E+  V P+  +   LM+ 
Sbjct: 428 TVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEM--ELAGVQPNFRSYTTLMQG 485

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A+ G++  A +  K +++   K     Y   +  C + G  + A +V ++M   GV  +
Sbjct: 486 FASIGEIGLAFKCLKRVNEITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVPMN 545

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + L+D     G +  A+ I+Q+ + +G +  I SY+S + AC  A + QKA E  E
Sbjct: 546 NYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATETIE 605

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-----SILLVA 375
            MK   L+P + T   LI          K +    +MK+ GL P+   Y     S+L  A
Sbjct: 606 EMKQQDLQPNLQTYTILIHGWTSVSHPEKALICYDEMKAAGLIPDKPLYYCIVTSLLSKA 665

Query: 376 CERKDDVEVG-LMLLSQAKEDGVIPNLVMFK 405
              ++ V  G L + S+  + G+  +L   K
Sbjct: 666 AIARETVRNGVLQVTSEMVDQGMCIDLATAK 696



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 99/466 (21%), Positives = 184/466 (39%), Gaps = 67/466 (14%)

Query: 20  NYAHDV---SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           N+ H+V   S  +H+Y    + G +     L+ DME +GL                    
Sbjct: 223 NWNHNVAIYSSIIHAY---CKAGNMERAEALVADMEEQGL-------------------- 259

Query: 77  IKEAFRFFKLVPNPTLSTFNMLM---SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
                         TL  +N+LM   + C         F  L+   + GL      Y  L
Sbjct: 260 ------------EATLGLYNILMDGYARCHIEAQCLNVFHKLKARIDTGLSPTAVTYGCL 307

Query: 134 ITTCAKSGKVDAMFENVKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I    K GK+    E  K         +R  ++ L+    Q G    AF V  +M+    
Sbjct: 308 INLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANAFSVFEDMSEA-- 365

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            ++PD +T   L+KA   + Q+ RA ++   +       T + Y   I+   +TGD   A
Sbjct: 366 GIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMKTGDVRMA 425

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
                +M   G  P+    + ++      G+++ A  ++ E +  G+     SY++LM  
Sbjct: 426 YKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQPNFRSYTTLMQG 485

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
            ++      A +  + +  I  KP + +  +L+ A C   ++   + V  +M   G+  N
Sbjct: 486 FASIGEIGLAFKCLKRVNEITQKPPIISYASLLKACCKAGRMQNAIAVTEEMAFAGVPMN 545

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKA-RTLN 422
              ++ LL    ++ D+     ++ + +++G  P++  +   +  C +    +KA  T+ 
Sbjct: 546 NYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATETIE 605

Query: 423 EHVLSFNSGRPQIE------NKWTSL-----ALMVYREAIVAGTIP 457
           E  +     +P ++      + WTS+     AL+ Y E   AG IP
Sbjct: 606 E--MKQQDLQPNLQTYTILIHGWTSVSHPEKALICYDEMKAAGLIP 649



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/409 (19%), Positives = 173/409 (42%), Gaps = 53/409 (12%)

Query: 22  AHDVSEQLHSYNRLIR--------QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           A  +   +H+YN LIR        QG +S C+   E+ME +G+                 
Sbjct: 151 AAGIDSSVHAYNNLIRAYIMAQNLQGAVS-CV---EEMEIEGIF---------------- 190

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
                           P  +TF+ ++S   SS + E A +  +         +  +Y+++
Sbjct: 191 ----------------PNAATFSAIISGYGSSGNVEAAEKWFQRSVSENWNHNVAIYSSI 234

Query: 134 ITTCAKSG---KVDAMFENVKPDRV-----VFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I    K+G   + +A+  +++   +     ++N L+    +     +  +V  ++ A + 
Sbjct: 235 IHAYCKAGNMERAEALVADMEEQGLEATLGLYNILMDGYARCHIEAQCLNVFHKLKARID 294

Query: 186 P-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             + P  +T G L+      G++ +A E  K +    I      Y++ ++   Q GD+  
Sbjct: 295 TGLSPTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFAN 354

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A SV++DM++ G+ PD V  + L+     + ++  A ++L   K +G S  I +Y +++ 
Sbjct: 355 AFSVFEDMSEAGIEPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIID 414

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                 + + A +    MK    +P  +T N ++  L    Q+ +   V+ +M+  G+ P
Sbjct: 415 GFMKTGDVRMAYKTVSEMKLAGCRPNATTYNVIMHNLVQLGQIDRAASVIDEMELAGVQP 474

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           N  +Y+ L+       ++ +    L +  E    P ++ +  ++  C +
Sbjct: 475 NFRSYTTLMQGFASIGEIGLAFKCLKRVNEITQKPPIISYASLLKACCK 523



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 85/202 (42%), Gaps = 3/202 (1%)

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           AR  ++ +    I  +   Y   I       + + A S  ++M  +G+ P+    SA+I 
Sbjct: 142 ARVTFEKMRAAGIDSSVHAYNNLIRAYIMAQNLQGAVSCVEEMEIEGIFPNAATFSAIIS 201

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
             G +G VEAA +  Q + ++  +  +  YSS++ A   A N ++A  L   M+   L+ 
Sbjct: 202 GYGSSGNVEAAEKWFQRSVSENWNHNVAIYSSIIHAYCKAGNMERAEALVADMEEQGLEA 261

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKS---LGLCPNTITYSILLVACERKDDVEVGL 386
           T+   N L+          + + V   +K+    GL P  +TY  L+    +   +   L
Sbjct: 262 TLGLYNILMDGYARCHIEAQCLNVFHKLKARIDTGLSPTAVTYGCLINLYTKLGKMMKAL 321

Query: 387 MLLSQAKEDGVIPNLVMFKCII 408
               + K  G+  N   +  ++
Sbjct: 322 EFCKEMKAQGITLNRNTYSMLV 343


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 194/485 (40%), Gaps = 77/485 (15%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           P  +TF  LM         E A +V   + E G  A       LI    K G+V+     
Sbjct: 122 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 181

Query: 145 ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               + +  +PD++ +N  +    Q+  V  A  V+  M  E H  DPD  T   ++   
Sbjct: 182 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGH--DPDVFTYNIVVNCL 239

Query: 202 ANAGQVDRAR--------------------------------EVYKMIHKYNIKG-TPEV 228
              GQ++ A+                                E   +  +  +KG +P+V
Sbjct: 240 CKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDV 299

Query: 229 YT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           YT  I IN   + GD   A  ++++M   G  PDEV  + LID     GK+  A ++L++
Sbjct: 300 YTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKD 359

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            ++ G     I+Y++++         ++A E+++ M    +     T N LI  LC   +
Sbjct: 360 MESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 419

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +    E+++ M S GL PN ITY+ +L    ++ D++    +L     +G   ++V +  
Sbjct: 420 IDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGT 479

Query: 407 II-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 465
           +I G+C                  +GR Q+       AL V R   + G  PT +  + V
Sbjct: 480 LINGLCK-----------------AGRTQV-------ALKVLRGMRIKGMRPTPKAYNPV 515

Query: 466 LGCLQLPYNADIRE-----RLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAAS 520
           L  L    N  IR+     R +  +G   DAL    +   +   G     AF  + E   
Sbjct: 516 LQSLFRRNN--IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVD 573

Query: 521 FGIVP 525
            G +P
Sbjct: 574 KGFIP 578



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 146/334 (43%), Gaps = 11/334 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P + TFN LM     +     A  +L  +   G+  D   +TTL+    + G ++A    
Sbjct: 87  PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 146

Query: 146 ---MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
              M E      +V  N LI    + G V+ A   + +  A+    +PD IT    +   
Sbjct: 147 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIAD--GFEPDQITYNTFVNGL 204

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                V  A +V  ++ +         Y I +NC  + G  E A  + + M  +G +PD 
Sbjct: 205 CQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 264

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LI       ++E A ++ ++   +G+S  + +++ L+ A     +   AL L+E 
Sbjct: 265 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 324

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK+    P   T N LI  LC   +L K +++L DM+S G   +TITY+ ++    +K  
Sbjct: 325 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 384

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
           +E    +  Q    G+  N + F  +I G+C  +
Sbjct: 385 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDK 418



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 2/259 (0%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           ++ D VV+N L+    +   +     V +EM A    + PD +T   LMKA   A QV  
Sbjct: 50  IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGA--RGIKPDVVTFNTLMKALCRAHQVRT 107

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A  + + +    +      +T  +    + G  E A  V   M + G    +V ++ LI+
Sbjct: 108 AVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLIN 167

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G+VE A   +Q+    G     I+Y++ +       +   AL++ + M      P
Sbjct: 168 GYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDP 227

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            V T N ++  LC   QL +   +L+ M   G  P+  T++ L+ A    + +E  L L 
Sbjct: 228 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLA 287

Query: 390 SQAKEDGVIPNLVMFKCII 408
            Q    GV P++  F  +I
Sbjct: 288 RQVTVKGVSPDVYTFNILI 306



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 127/288 (44%), Gaps = 26/288 (9%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  ++++N LI    + G     + L E+M+  G    +  Y+    N+C   K + +A
Sbjct: 295 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK-LGKA 353

Query: 81  FRFFKLV-----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
               K +     P  T+ T+N ++         E A +V   +   G+  +   + TLI 
Sbjct: 354 LDLLKDMESTGCPRSTI-TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 412

Query: 136 TCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K  K+D  F        E ++P+ + +N+++T   + G + +A D+L  M A    V
Sbjct: 413 GLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV 472

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           D   +T G L+     AG+   A +V + +    ++ TP+ Y   +    +  +   A S
Sbjct: 473 DV--VTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALS 530

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAG---HAGKVEAAFEILQEAKNQGI 292
           ++ +M + G  PD   L+  I F G     G ++ AF+ + E  ++G 
Sbjct: 531 LFREMAEVGEPPDA--LTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGF 576


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/322 (27%), Positives = 156/322 (48%), Gaps = 11/322 (3%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLI------TTCAKSGKVDAMFENV-KPDRVVFNALITA 163
           +   LR +   G K D  L T LI       T  K+ +V  + EN   PD + +NA+IT 
Sbjct: 76  SLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHILENHGHPDLIAYNAIITG 135

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
             ++  +D A+ VL  M  +     PD +T   L+ +  + G +D A E    + K N K
Sbjct: 136 FCRANRIDSAYQVLDRMKNK--GFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCK 193

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
            T   YTI I      G  + A  + D+M +  + PD    +++I      G V+ AF+I
Sbjct: 194 PTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQI 253

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           +    ++G +  +I+Y+ L+    N   W+   EL   M +   +  V T + LI+++C 
Sbjct: 254 ISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCR 313

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
             ++ + + +L DMK  GL P+   Y  L+ A  ++  V++ + +L     DG +P++V 
Sbjct: 314 DGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVN 373

Query: 404 FKCIIG-MC-SRRYEKARTLNE 423
           +  I+  +C  +R ++A ++ E
Sbjct: 374 YNTILACLCKQKRADEALSIFE 395



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 184/398 (46%), Gaps = 31/398 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L     I + I ++  +E  G  D+   Y+A     C++ + I  A++    + N    P
Sbjct: 102 LFTSKTIDKAIQVMHILENHGHPDL-IAYNAIITGFCRANR-IDSAYQVLDRMKNKGFSP 159

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDA 145
            + T+N+L+ S+C     S G        +   LK +CK     YT LI      G +D 
Sbjct: 160 DIVTYNILIGSLC-----SRGMLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDE 214

Query: 146 -------MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
                  M E N++PD   +N++I    + G VDRAF +++ ++++ +   PD IT   L
Sbjct: 215 AMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKGYA--PDVITYNIL 272

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           ++   N G+ +   E+   +     +     Y++ I+   + G  E    +  DM KKG+
Sbjct: 273 LRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGL 332

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD      LI      G+V+ A E+L    + G    I++Y++++      K   +AL 
Sbjct: 333 KPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCKQKRADEALS 392

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           ++E +  +   P  S+ N++ +AL       + + ++ +M   G+ P+ ITY+  L++C 
Sbjct: 393 IFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYNS-LISCL 451

Query: 378 RKD---DVEVGLMLLSQAKEDGVIPNLVMFKCI-IGMC 411
            +D   D  + L++  + +     P++V +  + +G+C
Sbjct: 452 CRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLC 489



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 101/443 (22%), Positives = 178/443 (40%), Gaps = 57/443 (12%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L S +R  + G  +E +  L  +  KG    ++   K+ H  F     + K I +A +  
Sbjct: 61  LKSLSRSCKAGNFNESLYFLRHLVNKGHKPDVVLCTKLIHGLF-----TSKTIDKAIQVM 115

Query: 85  KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            ++ N   P L  +N +++    +   + A+QVL  ++  G   D   Y  LI +    G
Sbjct: 116 HILENHGHPDLIAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRG 175

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            +D+  E        N KP  V +  LI A    G +D A  +L EM  E++ + PD  T
Sbjct: 176 MLDSALEFKNQLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEM-LEIN-LQPDMFT 233

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             ++++     G VDRA ++   I                                   +
Sbjct: 234 YNSIIRGMCREGYVDRAFQIISSI-----------------------------------S 258

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            KG  PD +  + L+    + GK EA +E++ +   +G    +++YS L+ +       +
Sbjct: 259 SKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVE 318

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           + + L + MK   LKP     + LI ALC   ++   +EVL  M S G  P+ + Y+ +L
Sbjct: 319 EGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTIL 378

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP 433
               ++   +  L +  +  E G  PN   +  +         K R L   +   + G  
Sbjct: 379 ACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVD 438

Query: 434 QIENKWTSLALMVYREAIVAGTI 456
                + SL   + R+ +V   I
Sbjct: 439 PDGITYNSLISCLCRDGMVDEAI 461



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 145/348 (41%), Gaps = 48/348 (13%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLS 93
           QG I E + LL++M    L      Y++    +C+ +  +  AF+    + +    P + 
Sbjct: 209 QGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCR-EGYVDRAFQIISSISSKGYAPDVI 267

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DA 145
           T+N+L+    +    E  ++++  +   G +A+   Y+ LI++  + GKV        D 
Sbjct: 268 TYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDM 327

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             + +KPD   ++ LI A  + G VD A +VL  M ++     PD +    ++       
Sbjct: 328 KKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISD--GCVPDIVNYNTILACLCKQK 385

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           + D A  +++ + +         Y    +    TG    A  +  +M  KGV PD +  +
Sbjct: 386 RADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDGITYN 445

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           +LI      G V+ A E+L + +                                 M+S 
Sbjct: 446 SLISCLCRDGMVDEAIELLVDME---------------------------------MESS 472

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           + KP+V + N ++  LC   ++   +EVL+ M   G  PN  TY+ L+
Sbjct: 473 ECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTYTFLI 520



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 88/209 (42%), Gaps = 13/209 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R G++ E + LL+DM++KGL      Y      +CK  + +  A     ++ +    P +
Sbjct: 313 RDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGR-VDLAIEVLDVMISDGCVPDI 371

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--------VD 144
             +N +++     K ++ A  +   + E G   +   Y ++ +    +G         ++
Sbjct: 372 VNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILE 431

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
            + + V PD + +N+LI+   + G VD A ++L +M  E     P  ++   ++      
Sbjct: 432 MLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKV 491

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
            +V  A EV   +     +     YT  I
Sbjct: 492 SRVSDAIEVLAAMVDKGCRPNETTYTFLI 520



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 117/281 (41%), Gaps = 25/281 (8%)

Query: 21  YAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           YA DV     +YN L+R    QG+     +L+ DM  +G       Y     +VC+  K 
Sbjct: 262 YAPDVI----TYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGK- 316

Query: 77  IKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           ++E     K +      P    ++ L++        + A +VL ++   G   D   Y T
Sbjct: 317 VEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNT 376

Query: 133 LITTCAKSGKVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           ++    K  + D   ++FE +      P+   +N++ +A   +G   RA  ++ EM  + 
Sbjct: 377 ILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDK- 435

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDW 242
             VDPD IT  +L+      G VD A E+   +   + +  P V  Y I +    +    
Sbjct: 436 -GVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRV 494

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
             A  V   M  KG  P+E   + LI+  G  G +  A ++
Sbjct: 495 SDAIEVLAAMVDKGCRPNETTYTFLIEGIGFGGCLNDARDL 535


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 177/406 (43%), Gaps = 33/406 (8%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SY  LI      GRI+E + L  DM         + Y    + +  S + + EA   F  
Sbjct: 266 SYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKV-EALNLFNE 324

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +      P + T+ +L+  +C  +K  E A ++L  + E GL      Y  LI    K G
Sbjct: 325 MKEKGCEPNVHTYTVLIDGLCKENKMDE-ARKMLSEMSEKGLIPSVVTYNALIDGYCKEG 383

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            +D  FE        +  P+   +N LI    +   V +A  +L +M      + P  IT
Sbjct: 384 MIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLE--RKLSPSLIT 441

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +L+        ++ A  +  ++++  +      Y++ I+   + G  E A +++D + 
Sbjct: 442 YNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVK 501

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            KGV  +EV  +ALID     GK++ A+ +L+   N        +Y+ L+      K  +
Sbjct: 502 AKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMK 561

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A  L   M ++ +KPTV T   LI  +         ++V + M SLG  P+  TY+  L
Sbjct: 562 EASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFL 621

Query: 374 VA------CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            A       E  DDV      +++  E+G++P+LV +  +I   +R
Sbjct: 622 HAYFSQGMLEEVDDV------IAKMNEEGILPDLVTYTVLIDGYAR 661



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/278 (25%), Positives = 135/278 (48%), Gaps = 4/278 (1%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           + PD   + +LI    ++  VD A++V   M  +      + ++   L+     AG+++ 
Sbjct: 225 LHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQK--GCQRNEVSYTNLIHGLCEAGRINE 282

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A +++  + + N   T   YT+ I   S +G    A +++++M +KG  P+    + LID
Sbjct: 283 ALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLID 342

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                 K++ A ++L E   +G+   +++Y++L+           A E+ + M+S    P
Sbjct: 343 GLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGP 402

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
              T N LI  LC   ++ K M +L+ M    L P+ ITY+ L+    + +D+E    LL
Sbjct: 403 NTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLL 462

Query: 390 SQAKEDGVIPNLVMFKCIIG-MCSR-RYEKARTLNEHV 425
           S   E+G++P+   +   I  +C   R E+A TL + V
Sbjct: 463 SLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSV 500



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 168/409 (41%), Gaps = 39/409 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           + L ++GR+ E   L + ++ KG+   + +Y A     CK  K I  A+   + + N   
Sbjct: 482 DTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGK-IDVAYSLLERMLNDAC 540

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P   T+N+L+  +C   K  E +  V +++   G+K     YT LI    K G  D   
Sbjct: 541 LPNSYTYNVLIEGLCKEKKMKEASSLVAKMLT-MGVKPTVVTYTILIGEMLKDGAFDHAL 599

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +          +PD   + A + A    G ++   DV+A+MN E   + PD +T   L+ 
Sbjct: 600 KVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEE--GILPDLVTYTVLID 657

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYT--------------------IAINCCSQT 239
             A  G   RA +  K +     K  P +Y                     I I+  S T
Sbjct: 658 GYARLGLTHRAFDFLKCMVDTGCK--PSLYIVSILIKNLSHENRMKETRSEIGIDSVSNT 715

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
            ++E A  +++ M + G   D     ALI       ++E A  ++   K +G+S     Y
Sbjct: 716 LEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIY 775

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           +SL+  C     + +A+ L + M    L P + +   L+  L       K   V   + S
Sbjct: 776 NSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLS 835

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            G   + + + +L+    ++D V+    L+   +E G  PN + +  +I
Sbjct: 836 CGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLI 884



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 147/371 (39%), Gaps = 50/371 (13%)

Query: 51  MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSK 106
           M +KG    +  Y      +C++ + I EA + F  +      PT+ T+ +L+   + S 
Sbjct: 255 MPQKGCQRNEVSYTNLIHGLCEAGR-INEALKLFADMTEDNCCPTVRTYTVLIYALSGSG 313

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MFEN-VKPDRVVFN 158
               A  +   ++E G + +   YT LI    K  K+D        M E  + P  V +N
Sbjct: 314 RKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYN 373

Query: 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 218
           ALI    + G +D AF++L  M  E +   P+  T   L+       +V +A  +   + 
Sbjct: 374 ALIDGYCKEGMIDDAFEILDLM--ESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKML 431

Query: 219 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278
           +  +  +   Y   I+   +  D E A  +   M + G++PD+   S  ID     G+VE
Sbjct: 432 ERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVE 491

Query: 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338
            A  +    K +G+    + Y+                                   ALI
Sbjct: 492 EAGTLFDSVKAKGVKANEVIYT-----------------------------------ALI 516

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
              C   ++     +L  M +    PN+ TY++L+    ++  ++    L+++    GV 
Sbjct: 517 DGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVK 576

Query: 399 PNLVMFKCIIG 409
           P +V +  +IG
Sbjct: 577 PTVVTYTILIG 587



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 7/232 (3%)

Query: 196 ALMKACANAGQVDRAREVYKMIH---KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +++K+C +   V    EV++ ++   ++  K T   Y   +   S+    +   +VY ++
Sbjct: 126 SMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLEL 185

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL-MGACSNAKN 311
               + P+    +A+++     G V  A     +    G+     +Y+SL +G C N K 
Sbjct: 186 LNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRN-KG 244

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
              A E++  M     +    +   LI  LC+  ++ + +++ +DM     CP   TY++
Sbjct: 245 VDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTV 304

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTL 421
           L+ A          L L ++ KE G  PN+  +  +I G+C   + ++AR +
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKM 356


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 179/382 (46%), Gaps = 25/382 (6%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSG---KVDAM 146
           T+  F+++    A+  D   A ++ + +Q +   K    +YT +I    + G   K   +
Sbjct: 45  TMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEI 104

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE+     VK +   F ALI A G++G  + +  +LA M  E   V+P+ IT   ++ AC
Sbjct: 105 FEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKE--RVEPNLITYNTVLNAC 162

Query: 202 ANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           +  G   +    ++  +    I+     Y   ++ CS  G  E A  V+  M + GV+ D
Sbjct: 163 SKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVAD 222

Query: 261 EVFLSALID-FAG--HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            V   +L+D FAG    G+VE   E+L+E +++G S  I  Y+SL+ A ++A N   A  
Sbjct: 223 AVTYKSLVDTFAGSNQLGRVE---ELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAG 279

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           +++ M+     P V T + L+    +     +   + SDMK L   P   TY+ L+    
Sbjct: 280 VFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFG 339

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSGRPQI 435
                +  + L     + GV P+   +  ++ +C R     +A  +++H+L+ N   P +
Sbjct: 340 EGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLT-NESTPSL 398

Query: 436 ENKWTSLA----LMVYREAIVA 453
           E     ++    + +Y++A+V+
Sbjct: 399 EASAGLISSYGKMAMYKDALVS 420



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 153/685 (22%), Positives = 267/685 (38%), Gaps = 131/685 (19%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           +DV   ++++  LI    R G+    + LL  M +K  ++ + + +    N C       
Sbjct: 111 NDVKWNVYAFTALINAYGRNGQYEASLHLLARM-KKERVEPNLITYNTVLNACSKGGLDW 169

Query: 79  EAF-RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           E     F  + +    P L T+N L+S C+S    E A  V + + E+G+ AD   Y +L
Sbjct: 170 EGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSL 229

Query: 134 ITTCAKS---GKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           + T A S   G+V+ +      E   PD   +N+LI A   +G V  A  V  +M  +  
Sbjct: 230 VDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYADAGNVHGAAGVFKQM--QRG 287

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
              PD  T   L++   N G  ++ R ++  + + +   T   Y   I    + G ++ +
Sbjct: 288 GCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKELSTPPTVATYNSLIQVFGEGGYFQES 347

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
            +++ DM   GV PD+   SAL+   G  G    A +I Q       +  + + + L+ +
Sbjct: 348 INLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISS 407

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL-CP 364
                 ++ AL  Y  ++   L P VS  +ALI     G    +    L  M   G   P
Sbjct: 408 YGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAP 467

Query: 365 NTITYSIL---------------LVACERKDDVEV-------------GLMLLSQAKEDG 396
            +   S++                   ++K+  EV              + LL +AKE+ 
Sbjct: 468 VSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEVDERTHETLLGVYCDMGLLEEAKEEF 527

Query: 397 VI-------PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 449
           VI       P   ++  ++ +C RR                      +KW   A  +  E
Sbjct: 528 VIIKETSKVPGARVYCLLLSLCVRR----------------------SKW-DYATQLLDE 564

Query: 450 AIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFG---- 505
            I AG +  V     V+G ++  Y+AD   ++VE    + D LK  ++   +D +     
Sbjct: 565 MIAAGGLHQV-----VVGIVRGTYDADFSWQVVE---YAFDGLKLRDMEESMDFYNALVE 616

Query: 506 -----EYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHR 560
                    RA  +L +A   G  P              +  I T +V+ + +     HR
Sbjct: 617 LLVYCNQKARAARVLADAMQRGAFP--------------EAFIKTRRVWSVNV-----HR 657

Query: 561 LAAGAKLPNVNIL---------LPVEKTQIMSVGG----EKTIDIAERTTQAIAALLRRL 607
           ++AGA +  ++           LP   + ++S G      K  D+     + + A L+  
Sbjct: 658 MSAGATVTALSTWFNDLQECEKLPFMTSIVVSCGDIEDHRKVEDLP--VAKVVQAFLKHY 715

Query: 608 GLPYQ-GNGSYGKIRINGLALKRWF 631
             P +  + + G+I   G ALK W 
Sbjct: 716 AAPLETASWNEGRIVCKGEALKPWL 740


>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 156/329 (47%), Gaps = 11/329 (3%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF----- 147
           +T+N L+++  +      AF+V   ++ AG   D   Y  +I + AKSG++DA F     
Sbjct: 198 ATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQE 257

Query: 148 ---ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
              +N++P  +VF +L+ + G++G +D +  V  EM      + P      +L+++   A
Sbjct: 258 MKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQG--FGLRPSATMYVSLIESFVKA 315

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G+++ A  ++  + K   +    +YT+ +   +++G  E A SV+ DM K G +P     
Sbjct: 316 GKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTY 375

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           S L++    +G+V++A ++     N G+  G+ +Y++L+   +N K    A ++   MK+
Sbjct: 376 SCLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKA 435

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
           +     VS  + L+  + DG  +   +  L  M S G+  N      L  +C +    E 
Sbjct: 436 MGFSVDVSASDVLMVYIKDG-SVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYES 494

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
              LL          +L+++  I+    R
Sbjct: 495 AKPLLETYVNSAAKVDLILYTSILAHLVR 523



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 158/338 (46%), Gaps = 13/338 (3%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMFENVKP 152
           N ++   A ++  E AF   + VQ++G K D   Y +LIT     G   K   ++E+++ 
Sbjct: 166 NQVVRDLAKAEKLEVAFCCFKKVQDSGCKIDTATYNSLITLFLNKGLPYKAFEVYESMEA 225

Query: 153 -----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
                D   +  +I +  +SG +D AF +  EM  +   + P  +   +L+ +   AG++
Sbjct: 226 AGCLLDGSTYELMIPSLAKSGRLDAAFKLFQEMKEK--NLRPSFLVFASLVDSMGKAGRL 283

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D + +VY  +  + ++ +  +Y   I    + G  E A  ++D+M K G  P+    + +
Sbjct: 284 DTSMKVYMEMQGFGLRPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMV 343

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ++    +GK+E A  +  + +  G      +YS L+   S +     A++LY  M +  L
Sbjct: 344 VESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLLEMHSASGQVDSAMKLYNSMTNAGL 403

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           +P +ST  AL+T L +   +    +VL +MK++G   +     +L+V   +   V++ L 
Sbjct: 404 RPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFSVDVSASDVLMVYI-KDGSVDLALR 462

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNE 423
            L      G+  N  + + +   C +   YE A+ L E
Sbjct: 463 WLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLLE 500



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/302 (19%), Positives = 133/302 (44%), Gaps = 13/302 (4%)

Query: 170 VDRAFDVLAEMNAEVHPVDPDHIT----IGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
           V +A  ++ + +A ++  D + ++       +++  A A +++ A   +K +     K  
Sbjct: 137 VIQALKIVTDTDASLNSGDNNGVSSVIACNQVVRDLAKAEKLEVAFCCFKKVQDSGCKID 196

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
              Y   I      G    A  VY+ M   G + D      +I     +G+++AAF++ Q
Sbjct: 197 TATYNSLITLFLNKGLPYKAFEVYESMEAAGCLLDGSTYELMIPSLAKSGRLDAAFKLFQ 256

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           E K + +    + ++SL+ +   A     ++++Y  M+   L+P+ +   +LI +     
Sbjct: 257 EMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSATMYVSLIESFVKAG 316

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           +L   + +  +MK  G  PN   Y++++ +  +   +E  + + S  ++ G +P    + 
Sbjct: 317 KLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYS 376

Query: 406 CIIGMCSRRYEKARTLNEHVLSFNSG-RPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 464
           C++ M S   +    +  +    N+G RP +      L L+  ++         V+V +K
Sbjct: 377 CLLEMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKK--------LVDVAAK 428

Query: 465 VL 466
           VL
Sbjct: 429 VL 430


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/347 (24%), Positives = 160/347 (46%), Gaps = 16/347 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P       L++  A + D +   ++L  VQ   ++ +  +Y  L++   K  +V      
Sbjct: 106 PDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSVLVKQNQVHEAIYL 165

Query: 144 --DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             + +     PD   FN LI    + G VDRAF+V  +M  E     PD +T   L+   
Sbjct: 166 FKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDM--ESFGCLPDVVTYNTLINGL 223

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
             A +V R  E++K I   +   +P++  YT  I+   ++G  + A +++++M + G+ P
Sbjct: 224 CKANEVQRGCELFKEIQSRS-DCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQP 282

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + +  + LID  G  G +  A  + ++      S  +++++SL+     A      L+ +
Sbjct: 283 NVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFW 342

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             MK+  + PTV T   LI ALC  ++L +  + L  +K+  + P    Y+ ++    + 
Sbjct: 343 NVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKA 402

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMC--SRRYEKARTLNE 423
            +V+ G ++L + +E    P+ V F   IIG C   R +E     N 
Sbjct: 403 GNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNR 449



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 5/210 (2%)

Query: 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
           N+      Y + +    Q G  +    V+D M   G +PD   L  L+ +   A   +  
Sbjct: 68  NVNHCYSTYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMV 127

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
            ++L E + + + +    Y++L+          +A+ L++    ++  P   T N LI  
Sbjct: 128 KKLLAEVQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRG 187

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS--QAKEDGVI 398
           LC    + +  EV  DM+S G  P+ +TY+ L+    + ++V+ G  L    Q++ D   
Sbjct: 188 LCRVGGVDRAFEVFKDMESFGCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSD-CS 246

Query: 399 PNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
           P++V +  II G C S + ++A  L E ++
Sbjct: 247 PDIVTYTSIISGFCKSGKMKEASNLFEEMM 276



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 132/321 (41%), Gaps = 53/321 (16%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L R G +    ++ +DME  G L                                P + T
Sbjct: 188 LCRVGGVDRAFEVFKDMESFGCL--------------------------------PDVVT 215

Query: 95  FNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKV------ 143
           +N L++ +C +++   G      L +E   ++DC      YT++I+   KSGK+      
Sbjct: 216 YNTLINGLCKANEVQRGC----ELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNL 271

Query: 144 --DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             + M   ++P+ + FN LI   G+ G +  A  +  +M         D +T  +L+   
Sbjct: 272 FEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKM--AYFDCSADVVTFTSLIDGY 329

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AGQV+   + + ++   N+  T   Y + IN   +      A      +    +IP  
Sbjct: 330 CRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKP 389

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL-MGACSNAKNWQKALELYE 320
              + +ID    AG V+    IL+E + +      ++++ L +G C   + ++ A+ ++ 
Sbjct: 390 FMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFE-AINIFN 448

Query: 321 HMKSIKLKPTVSTMNALITAL 341
            M + +  P   T+N+LI+ L
Sbjct: 449 RMLATRCAPDNITVNSLISCL 469



 Score = 39.3 bits (90), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 65/159 (40%), Gaps = 22/159 (13%)

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           +F+NV K++              +PT+ T+ +L++          A   L  ++ + +  
Sbjct: 340 KFWNVMKTRNV------------SPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIP 387

Query: 126 DCKLYTTLITTCAKSGKVDA-------MFEN-VKPDRVVFNALITACGQSGAVDRAFDVL 177
              +Y  +I    K+G VD        M E    PD+V F  LI      G +  A ++ 
Sbjct: 388 KPFMYNPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIF 447

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
             M A      PD+IT+ +L+     AG  + A  + KM
Sbjct: 448 NRMLAT--RCAPDNITVNSLISCLLKAGMPNEAYRIRKM 484


>gi|449443502|ref|XP_004139516.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
 gi|449492820|ref|XP_004159111.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Cucumis sativus]
          Length = 704

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 168/357 (47%), Gaps = 16/357 (4%)

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           N+  SQ A+  A R+F+ +   +  T  +N+ + V    +D EGA ++   +   G+K D
Sbjct: 155 NMSNSQTALL-ALRYFQDMLKSSKQTIFYNVTLKVFRKCRDMEGAEKLFEEMINRGVKPD 213

Query: 127 CKLYTTLITT---CAKSGKVDAMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLA 178
              ++T+I+    C+   K    FE     +  PD V ++ +I A G++G VD AF +  
Sbjct: 214 NVTFSTIISCARLCSLPSKAVEWFEKMPSFDCNPDDVTYSTMIDAYGRAGNVDMAFSLYD 273

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
               E   +DP   T   ++K    AG  D    VY+ +    IK    +Y   ++   +
Sbjct: 274 RARTENWRIDP--ATFSTMIKIHGVAGNYDGCLNVYEEMKAIGIKPNLVIYNCLLDAMGR 331

Query: 239 TG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
               W+   ++Y +M K G  P     ++L+   G A   E A  + +E K +G+ + +I
Sbjct: 332 AKRPWQIK-TIYKEMIKNGFSPSWATYASLLRAYGRARYGEDALIVYKEMKEKGLQLNVI 390

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
            Y++L+  C++     +A+E+++ MKS     P   T +++IT    G ++ +  E+L+D
Sbjct: 391 LYNTLLAMCADVGYVNEAVEIFQDMKSSGTCSPDSWTFSSMITIYSCGGKVSEAEEMLND 450

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           M   G  PN    + L+    +   V+  +   +Q  E G+ P+     C++ + ++
Sbjct: 451 MVEAGFDPNIFVLTSLIQCYGKAKRVDDVVRTFNQLIELGLTPDDRFCGCLLNVITQ 507


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 176/404 (43%), Gaps = 37/404 (9%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           Y +DV+  +   N L ++G + +   L+E+M   GL      Y+      C+    + EA
Sbjct: 247 YPNDVTYNV-LVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFV-EA 304

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F   + + N    PTLST+N LM            + + + VQ  G++            
Sbjct: 305 FDLVEEMVNRRAFPTLSTYNTLM------------YGLCKWVQVTGVRLRFS-------- 344

Query: 137 CAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                  D +     PD V FN+L+    ++G +  AF +  E+  +   + P  IT   
Sbjct: 345 -------DMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDEL--KCRDLVPTVITYNT 395

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+      G +D A  + K +    +      YTI +N C + G    A   +++M  KG
Sbjct: 396 LIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKG 455

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD    +  I           AF + +E    G    +I+Y+  + A     N+++A 
Sbjct: 456 LKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEAC 515

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +L E+M S  L P   T  ++I        L K  EV ++M S G+ P+ +TY++L+ A 
Sbjct: 516 DLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAH 575

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA 418
             K  +++  M  S+  E  V  N++ +  II G+C +RR ++A
Sbjct: 576 AAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEA 619



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 157/363 (43%), Gaps = 25/363 (6%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LI    ++G   E  DL+E+M  +        Y+   + +CK  +      RF  
Sbjct: 286 YTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSD 345

Query: 86  LVPN---PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           ++ +   P + +FN +L   C +   SE AF +   ++   L      Y TLI      G
Sbjct: 346 MLKSKFTPDIVSFNSLLYGYCRTGCISE-AFLLFDELKCRDLVPTVITYNTLIHGLCMWG 404

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            +DA          + + PD   +  L+  C + G V  A     EM ++   + PD   
Sbjct: 405 YLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSK--GLKPDRF- 461

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYD 250
             A         ++      + M  +    G P     Y + ++   Q G++E AC + +
Sbjct: 462 --AYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLE 519

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M   G+IPD V  +++I+     G +  A E+  E  ++G++  +++Y+ L+ A +  +
Sbjct: 520 NMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQ 579

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
               A   +  M    +   V T NA+I  LC   ++ +  +   +M+  G+ PN  +Y+
Sbjct: 580 MLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYT 639

Query: 371 ILL 373
           IL+
Sbjct: 640 ILI 642



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 110/231 (47%), Gaps = 1/231 (0%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD      +++   +   + +A+ VY M+ ++ IK T   Y   ++   + G  + A  +
Sbjct: 178 PDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALEL 237

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
             +M ++G  P++V  + L++     G++E A  +++E  N G++V   +Y+ L+     
Sbjct: 238 LSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQ 297

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
              + +A +L E M + +  PT+ST N L+  LC   Q+       SDM      P+ ++
Sbjct: 298 KGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVS 357

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKA 418
           ++ LL    R   +    +L  + K   ++P ++ +  +I G+C   Y  A
Sbjct: 358 FNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDA 408



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/327 (23%), Positives = 143/327 (43%), Gaps = 19/327 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           S+N L+    R G ISE   L ++++ + L+     Y+     +C     +  A R  K 
Sbjct: 357 SFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCM-WGYLDAALRLKKE 415

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-------- 134
           + +    P + T+ +L++ C        A      +   GLK D   Y T I        
Sbjct: 416 MTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIAD 475

Query: 135 TTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           T+ A S + + +     PD + +N  + A  Q G  + A D+L  M ++   + PDH+T 
Sbjct: 476 TSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSD--GLIPDHVTY 533

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +++      G + +AREV+  +    +  +   YT+ I+  +     + A   +  M +
Sbjct: 534 TSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLE 593

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           K V  + +  +A+I+      +++ A++   E + +GI     SY+ L+    N   W++
Sbjct: 594 KSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEE 653

Query: 315 ALELYEHMKSIKLKPTVSTMNALITAL 341
           AL LY  M   K++P   T +  +  L
Sbjct: 654 ALRLYREMLDRKIQPDSFTHSVFLKNL 680



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 92/430 (21%), Positives = 178/430 (41%), Gaps = 23/430 (5%)

Query: 144 DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M  N + PD    N ++        + +A +V   M  E   + P  +T   ++ +  
Sbjct: 169 DKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMM--EQFGIKPTVVTYNTMLDSYC 226

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G+VD+A E+   + +         Y + +N  S+ G+ E A  + ++M   G+     
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEH 321
             + LI+     G    AF++++E  N+     + +Y++LM G C   +     L   + 
Sbjct: 287 TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDM 346

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +KS K  P + + N+L+   C    + +   +  ++K   L P  ITY+ L+        
Sbjct: 347 LKS-KFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGY 405

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLS---------FNS 430
           ++  L L  +  + G+ P++  +  ++  C +      AR     +LS         +N+
Sbjct: 406 LDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNT 465

Query: 431 ---GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 487
              G  +I +  TS+A  +  E + AG  P V   +  +  L    N +    L+EN+  
Sbjct: 466 RIVGEMKIAD--TSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVS 523

Query: 488 SADALKRSNLCSLIDGFGE--YDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHT 545
                      S+I+GF +  +  +A  +  E  S G+ P V    + +   A K  +  
Sbjct: 524 DGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDL 583

Query: 546 AKVYLLTILK 555
           A +Y   +L+
Sbjct: 584 AFMYFSKMLE 593



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 153/393 (38%), Gaps = 50/393 (12%)

Query: 83  FFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F K++ N   P +   N ++ V         A  V  ++++ G+K     Y T++ +  K
Sbjct: 168 FDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCK 227

Query: 140 SGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEM-----NAEVHP 186
            G+VD   E           P+ V +N L+    + G +++A  ++ EM     N   + 
Sbjct: 228 EGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYT 287

Query: 187 VDP---------------DHI-------------TIGALMKACANAGQVDRAREVYKMIH 218
            +P               D +             T   LM       QV   R  +  + 
Sbjct: 288 YNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDML 347

Query: 219 KYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           K   K TP++  +   +    +TG    A  ++D++  + ++P  +  + LI      G 
Sbjct: 348 KS--KFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGY 405

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           ++AA  + +E  +QG+   I +Y+ L+  C        A   +  M S  LKP     N 
Sbjct: 406 LDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNT 465

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
            I              +  +M + G  P+ ITY++ + A  ++ + E    LL     DG
Sbjct: 466 RIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDG 525

Query: 397 VIPNLVMFKCIIGMCSR--RYEKARTLNEHVLS 427
           +IP+ V +  II    +     KAR +   +LS
Sbjct: 526 LIPDHVTYTSIINGFVKNGHLRKAREVFNEMLS 558



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 4/118 (3%)

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           L +++ M    L P V   N ++  L D + L K   V   M+  G+ P  +TY+ +L +
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDS 224

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSG 431
             ++  V+  L LLS+ +E G  PN V +  ++   S++   E+A+ L E +L  NSG
Sbjct: 225 YCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEML--NSG 280



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 15/196 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L +QG   E  DLLE+M   GL+  D V +    N       +++A   F  + +    P
Sbjct: 505 LCQQGNFEEACDLLENMVSDGLIP-DHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAP 563

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
           ++ T+ +L+   A+ +  + AF     + E  + A+   Y  +I     + ++D  +   
Sbjct: 564 SVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYF 623

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                + + P++  +  LI      G  + A  +  EM      + PD  T    +K   
Sbjct: 624 DEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDR--KIQPDSFTHSVFLKNLH 681

Query: 203 NAGQVDRAREVYKMIH 218
              QV   + V  +I 
Sbjct: 682 RDYQVHAVQCVESLIQ 697


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/409 (22%), Positives = 179/409 (43%), Gaps = 15/409 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT--- 91
           L R GR SE   L  +M++ G+      Y     ++ K Q+  +      ++V       
Sbjct: 304 LCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMD 363

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
           L  +  +M         E A  VLR      +  +C  YT L+    ++G +D   +   
Sbjct: 364 LVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLL 423

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                +V P+ V F++++    + G + +A   + +M      + P+ +T G L+     
Sbjct: 424 QMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDS--GIAPNVVTYGTLIDGFFK 481

Query: 204 AGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
               + A +VY+ M+H+  ++    +    +N   + G+ E A +++ DM ++G++ D V
Sbjct: 482 CQGQEAALDVYRDMLHE-GVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHV 540

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L+D     G + AA ++ QE   + +S   + Y+  +        + +A    + M
Sbjct: 541 NYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFINCLCRLGKFSEAKSFLKEM 600

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           ++  L+P  +T N +I+A C      K +++L++MK   + PN ITY+ L+V       V
Sbjct: 601 RNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVV 660

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 431
           E    LL++    G  P  + ++ ++  CS        L  H L   +G
Sbjct: 661 EKAKYLLNEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAG 709



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 184/434 (42%), Gaps = 58/434 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR----FFNVCKSQKAIKEAFRFFKLVP 88
           N L + G I E   L +DM  +GLL +D V +A      F       A+K      +   
Sbjct: 512 NGLRKNGNIEEAEALFKDMGERGLL-LDHVNYATLMDGLFKTGNMPAALKVGQELMERNL 570

Query: 89  NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
           +P    +N+ ++ +C   K SE A   L+ ++  GL+ D   Y T+I+   + G      
Sbjct: 571 SPDAVVYNVFINCLCRLGKFSE-AKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKAL 629

Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
               +  + ++KP+ + +  L+    ++G V++A  +L EM +      P  +T   +++
Sbjct: 630 KLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASA--GFTPTPLTYRRVLQ 687

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           AC+ +       EV++++    +     VY   ++     G    A  V D+M  +G+ P
Sbjct: 688 ACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAP 747

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---------- 309
           D +  +ALI     +  ++ AF    +  +QG+S  I ++++L+G   +A          
Sbjct: 748 DTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVI 807

Query: 310 -------------------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
                                     N  +AL LY  M S    P  ST N+LI+     
Sbjct: 808 CEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFAKA 867

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVIPNLVM 403
             + +  E+ S+MK  G+   + TY ILL    + ++  EV + LL   KE G  P+   
Sbjct: 868 GMMNQAKELFSEMKRRGVLHTSSTYDILLNGWSKLRNGTEVRI-LLKDMKELGFKPS--- 923

Query: 404 FKCIIGMCSRRYEK 417
            K  I   SR + K
Sbjct: 924 -KGTISSMSRAFSK 936



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 132/284 (46%), Gaps = 6/284 (2%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V  D V +N  +    + G    A  VL+EM     P D   +T+   +   +  G V  
Sbjct: 113 VAADTVSYNIFLAGLSEQGHGRLAPPVLSEMCKRGVPWD--GVTMSTALVGLSRTGLVGE 170

Query: 210 AREVYKM-IHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           A  + +M +    I G   V +   I+   +  D   A +V + MT +G+  D V  + L
Sbjct: 171 AAALAEMLVRGRGIDGLGVVGWNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTL 230

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           +    ++G  +AA+E+ +  K  G+   ++++++L+G     K  ++A  LYE M    +
Sbjct: 231 VAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGV 290

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P V T++AL+  LC   +  +   +  +M  +G+ PN +TY   + +  +   V   L 
Sbjct: 291 LPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLG 350

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 429
           LL +    GV  +LVM+  ++    +  + E+A+ +  H LS N
Sbjct: 351 LLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDN 394



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 100/457 (21%), Positives = 180/457 (39%), Gaps = 81/457 (17%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK--LVPN- 89
           + L +  R++E + LL +M  +G+  MD V +    +    +  I+EA    +  L  N 
Sbjct: 337 DSLAKVQRVNESLGLLGEMVSRGV-AMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNI 395

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDA 145
            P   T+ +L+     + + +GA Q+L  ++E  +  +   +++++    K G   K   
Sbjct: 396 TPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAG 455

Query: 146 MFENVK-----PDRVVFNALITA---C-GQSGAVDRAFDVLAE-MNAEVHPVDP------ 189
               +K     P+ V +  LI     C GQ  A+D   D+L E + A    VD       
Sbjct: 456 YMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLR 515

Query: 190 ----------------------DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                                 DH+    LM      G +  A +V + + + N+     
Sbjct: 516 KNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAV 575

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           VY + INC  + G +  A S   +M   G+ PD+   + +I      G    A ++L E 
Sbjct: 576 VYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEM 635

Query: 288 KNQGISVGIISYSSL-----------------------------------MGACSNAKNW 312
           K   I   +I+Y++L                                   + ACS +++ 
Sbjct: 636 KWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSGSRSP 695

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
              LE++E M    L   ++  N L+  LC      K   VL +M   G+ P+TIT++ L
Sbjct: 696 YVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEMLGRGIAPDTITFNAL 755

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           ++   +   ++      +Q    G+ PN+  F  ++G
Sbjct: 756 ILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLG 792



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/287 (24%), Positives = 123/287 (42%), Gaps = 10/287 (3%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------ 148
           +N L+      +D   A  V+  +   GL  D   Y TL+     SG  DA +E      
Sbjct: 192 WNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMK 251

Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              V+P  V    LI    +   ++ AF +   M      V PD +T+ AL+      G+
Sbjct: 252 ADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRS--GVLPDVVTLSALVDGLCRDGR 309

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
              A  +++ + K  +      Y   I+  ++      +  +  +M  +GV  D V  + 
Sbjct: 310 FSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTT 369

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           ++D  G  GK+E A ++L+ A +  I+   ++Y+ L+ A   A N   A ++   M+   
Sbjct: 370 VMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKS 429

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           + P V T ++++  L     + K    +  MK  G+ PN +TY  L+
Sbjct: 430 VSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLI 476



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/362 (22%), Positives = 157/362 (43%), Gaps = 14/362 (3%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           V +NALI    +   +  A  V+  M  +   +  D +    L+     +G  D A EV 
Sbjct: 190 VGWNALIDGYCKVQDMAAALAVVERMTTQ--GLSLDVVGYNTLVAGFFYSGDADAAWEVA 247

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           + +    ++ +   +T  I    +    E A ++Y+ M + GV+PD V LSAL+D     
Sbjct: 248 ERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRD 307

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G+   A+ + +E    G++   ++Y + + + +  +   ++L L   M S  +   +   
Sbjct: 308 GRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMY 367

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
             ++  L    ++ +  +VL    S  + PN +TY++L+ A  R  +++    +L Q +E
Sbjct: 368 TTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEE 427

Query: 395 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG-RPQIENKWTSL----------- 442
             V PN+V F  I+    +R   A+         +SG  P +    T +           
Sbjct: 428 KSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEA 487

Query: 443 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 502
           AL VYR+ +  G      +V  ++  L+   N +  E L +++G     L   N  +L+D
Sbjct: 488 ALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMD 547

Query: 503 GF 504
           G 
Sbjct: 548 GL 549


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 112/466 (24%), Positives = 201/466 (43%), Gaps = 41/466 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L++ G   + + + E M   G+L     Y       CK  + + EAF F K +      P
Sbjct: 231 LVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGR-VDEAFNFVKEMERSCCEP 289

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----- 145
            + T+N L+    S  D  GA +VL L+ E G+  + + YT LI    K G+++      
Sbjct: 290 NVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLI 349

Query: 146 ---MFENVKPDRVVFNALITACGQSGAVDRAF---DVLAEMNAEVHPVDPDHITIGALMK 199
              M +N+  D  V+  LI A   +G VD A    D + ++  +++ V        +L+ 
Sbjct: 350 GCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTV-----ICNSLIN 404

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G V++A EV   +  +N+K     Y   ++   +  D+  A  + D+M  KGV  
Sbjct: 405 GYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNF 464

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
             V  + L+    H G VE A  I      +G++   ++Y +L+ A      + +A+ ++
Sbjct: 465 TVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIW 524

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           +   S     +++  N +I   C  ++L +  E+   MK LG  P+ ITY  L+    + 
Sbjct: 525 KDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKV 584

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE-----------KARTLNEHVLSF 428
            ++   L L   ++ DG+  +  M+  +I    R  E           K R L+ +V+++
Sbjct: 585 GNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTY 644

Query: 429 NSGRPQIENKWTSLALM-----VYREAIVAGTIPTVEVVSKVLGCL 469
            S    +   W    +M      Y + I  G  P + + SK++  L
Sbjct: 645 GS----LIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSL 686



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/419 (21%), Positives = 172/419 (41%), Gaps = 54/419 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL----VPNP 90
             + G     + + +D   KG      +Y+      CK +K ++    F K+     P  
Sbjct: 511 FFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPD 570

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---GKVDAMF 147
            ++   ++   C      E A ++  + +  G+ +  ++Y +LIT   +S    K++ + 
Sbjct: 571 EITYRTLIDGYCKVGNLVE-ALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLL 629

Query: 148 ENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
             +K     P+ V + +LI      G +D+A++   +M  +   + P+ I    ++ +  
Sbjct: 630 AEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDK--GIAPNIIIGSKIVSSLY 687

Query: 203 NAGQVDRAR-----------------------------EVYKMIHKYNIKGTPE------ 227
             G++D A                              E  K++  +  K          
Sbjct: 688 RHGKIDEANLILHQIADIDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPISNNI 747

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           VY IAI    ++ + +    +  D+  KG  PD     +LI      GKV  AF +  + 
Sbjct: 748 VYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDM 807

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
            N G+   I+ Y++L+     + N  +A  L+  +    L PTV T N LI   C G + 
Sbjct: 808 INAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRT 867

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILL--VACERKDDVEVGLM--LLSQAKEDGVIPNLV 402
            + +E+   M+  G+CP++ITYS L+  +  E K +  VGL+  ++   K   V+  LV
Sbjct: 868 TEALELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAGKGSSVMDPLV 926



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 1/155 (0%)

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
           +P V+ + +   ++ G  +FA  V+D+M K G +P     ++L+      G+   A  + 
Sbjct: 185 SPTVFDMILKVFAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVY 244

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
           ++    GI   I SY+ ++ A        +A    + M+    +P V T N+LI      
Sbjct: 245 EQMIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSL 304

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CER 378
             +    +VL+ M   G+  N+ TY++L+   C+R
Sbjct: 305 GDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKR 339



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 74/379 (19%), Positives = 139/379 (36%), Gaps = 45/379 (11%)

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY-T 131
           S + +    R  +L P+ +L  F +         D     +++ ++  A +  + ++Y  
Sbjct: 97  SNELMDLVLRNLRLNPDASLEFFKLASKQPKFRPDVSSYCKIVHILSRARMYKEVRVYLN 156

Query: 132 TLITTCAKSGKVDAMFENVKP-------DRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
            L+  C  +    A+++ +            VF+ ++    + G    A  V   M  + 
Sbjct: 157 ELVVLCKNNYIASAVWDELVSVYREFSFSPTVFDMILKVFAEKGMTKFALCVFDNM-GKC 215

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             V P   +  +L+      G+  +A  VY+ +    I      YTI +N   + G  + 
Sbjct: 216 GRV-PSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDE 274

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM- 303
           A +   +M +    P+ V  ++LID     G V  A ++L     +GI     +Y+ L+ 
Sbjct: 275 AFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIK 334

Query: 304 GACSNAKNWQ----------------------------------KALELYEHMKSIKLKP 329
           G C   +  Q                                   AL + + M  + LK 
Sbjct: 335 GYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKM 394

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
                N+LI   C    + K  EVL  MK   L P++  Y+ LL    +++D      L 
Sbjct: 395 NTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLC 454

Query: 390 SQAKEDGVIPNLVMFKCII 408
            +    GV   +V +  ++
Sbjct: 455 DEMHNKGVNFTVVTYNTLL 473


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 166/356 (46%), Gaps = 10/356 (2%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           F  + ++Q A       F++    +L TFN++++V       + A + +  ++  G+K +
Sbjct: 191 FLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPN 250

Query: 127 CKLYTTLITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLA 178
              Y T+I      GK      +F+ +K     PD   +N+ I+   + G ++ A  ++ 
Sbjct: 251 VVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLIC 310

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
           +M  E   V P+ +T  AL+    N G +D+A      +    I  +   Y + I+    
Sbjct: 311 KM-LEGGLV-PNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFM 368

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G    A ++  +M +KG++PD V  + LI+     G  + AF +L E   +GI   +++
Sbjct: 369 EGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVT 428

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y+SL+         ++A  L+  ++   L P +   NALI   C    + +  ++L +M 
Sbjct: 429 YTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMD 488

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           ++ + P+ ITY+ L+    R+  VE    LL + K  G+ P+ + +  +I   S+R
Sbjct: 489 NMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKR 544



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 162/370 (43%), Gaps = 21/370 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN +I     +G+      + + M+ KGL      Y++    +CK  +  + +    K 
Sbjct: 253 TYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKM 312

Query: 86  ----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC---A 138
               LVPN    T+N L+    +  D + A+     +   G+ A    Y   I       
Sbjct: 313 LEGGLVPNAV--TYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEG 370

Query: 139 KSGKVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           + G  D M + ++     PD V  N LI    + G   RAF +L EM  +   + P  +T
Sbjct: 371 RMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGK--GIQPTLVT 428

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +L+       ++  A  ++  I +  +     V+   I+     G+ + A  +  +M 
Sbjct: 429 YTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMD 488

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
              V+PDE+  + L+      GKVE A ++L E K +GI    ISY++L+   S   + +
Sbjct: 489 NMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMK 548

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A  + + M +    PT+ T NALI  LC   +     E+L +M S G+ P+  TY  ++
Sbjct: 549 DAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSII 608

Query: 374 VACERKDDVE 383
            A E  DD+E
Sbjct: 609 EAMETVDDLE 618



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 171/359 (47%), Gaps = 18/359 (5%)

Query: 70  VCKSQKAIKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           +CK  K +K+A  F      L   P + T+N ++         + A  + + +++ GL+ 
Sbjct: 226 LCKEGK-LKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEP 284

Query: 126 DCKLYTTLITTCAKSGKVD-------AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVL 177
           DC  Y + I+   K G+++        M E  + P+ V +NALI      G +D+A+   
Sbjct: 285 DCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYR 344

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            EM ++   +    +T    + A    G++  A  + K + +  +      + I IN   
Sbjct: 345 DEMISK--GIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYC 402

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           + GD + A  + D+M  KG+ P  V  ++LI   G   +++ A  +  + + +G+   II
Sbjct: 403 RCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDII 462

Query: 298 SYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
            +++L+ G C+N  N  +A +L + M ++K+ P   T N L+   C   ++ +  ++L +
Sbjct: 463 VFNALIDGHCANG-NIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDE 521

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
           MK  G+ P+ I+Y+ L+    ++ D++    +  +    G  P ++ +  +I G+C  +
Sbjct: 522 MKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQ 580



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 128/296 (43%), Gaps = 40/296 (13%)

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +KG +P+    + ++       + + A+ +  E     I   + +++ ++         +
Sbjct: 174 EKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLK 233

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA E   HM+++ +KP V T N +I   C   +  +   +   MK  GL P+  TY+  +
Sbjct: 234 KAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFI 293

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSG 431
               ++  +E    L+ +  E G++PN V +  +I G C++   +KA    + ++S    
Sbjct: 294 SGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMIS---- 349

Query: 432 RPQIENKWTSLALMVYREAIVA----GTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 487
                 K    +L+ Y   I A    G +   + + K           ++RE+     G+
Sbjct: 350 ------KGIMASLVTYNLFIHALFMEGRMGDADNMIK-----------EMREK-----GM 387

Query: 488 SADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVPC-VSFKEIPVVVDAR 539
             DA+  +    LI+G+   G+   RAF LL+E    GI P  V++  +  V+  R
Sbjct: 388 MPDAVTHN---ILINGYCRCGDAK-RAFGLLDEMVGKGIQPTLVTYTSLIYVLGKR 439


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 163/359 (45%), Gaps = 21/359 (5%)

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPN--------PTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           +++N+  ++   + + R  KL+ N        PT  +FN L++    S++ +  F++ + 
Sbjct: 224 QYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKT 283

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDA---MFEN-----VKPDRVVFNALITACGQSGA 169
           ++E  +  D   Y+ LI    K G++D    +F+      ++P+ + F ALI    +S  
Sbjct: 284 MEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRR 343

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D A +   +M      V PD +    L+      G V++AR++   +    +K     Y
Sbjct: 344 IDSAMNTYHQM--LTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITY 401

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           T  I+   + GD E A  +   M ++GV+ D V  +ALI      G+V  A   L+E   
Sbjct: 402 TTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVE 461

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            G+     +Y+ ++       N +   +L + M+    KP V T N L+  LC   Q+  
Sbjct: 462 AGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKN 521

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              +L  M +LG+ P+ ITY+ILL    +    E    LL    E G+I +   +  ++
Sbjct: 522 ANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAED---LLKLRNEKGLIVDYAYYTSLV 577



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 131/311 (42%), Gaps = 46/311 (14%)

Query: 156 VFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           VF+AL+ A   SG V  A   F ++   N ++    P H   G L+    N+        
Sbjct: 155 VFDALMIAYWDSGFVSDAIQCFRLVRNSNFQI----PFH-GCGYLLDKMINSNSPVTIWT 209

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---------------- 256
            Y  I +Y      + Y I IN   + G    A  +++++ K+G                
Sbjct: 210 FYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLC 269

Query: 257 -------------------VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
                              + PD    S LI      G+++ A ++  E + +G+    I
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           ++++L+     ++    A+  Y  M ++ +KP +   N L+  LC    + K  +++ +M
Sbjct: 330 TFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRR 414
           + +G+ P+ ITY+ L+    ++ D+E  + +     E+GV+ + V F  +I G C   R 
Sbjct: 390 RMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRV 449

Query: 415 YEKARTLNEHV 425
            +  RTL E V
Sbjct: 450 RDAERTLREMV 460



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 124/283 (43%), Gaps = 22/283 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           L ++GR+     L ++M+++GL      + A     C+S++   A+    +   +   P 
Sbjct: 303 LCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPD 362

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF---- 147
           L  +N L++      D   A +++  ++  G+K D   YTTLI    K G +++      
Sbjct: 363 LVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRK 422

Query: 148 ----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
               E V  D V F ALI+   + G V  A   L EM      + PD  T   ++     
Sbjct: 423 GMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEA--GMKPDDATYTMVIDGYCK 480

Query: 204 AGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            G V      +K++ +  I G  P V  Y + +N   + G  + A  + + M   GV PD
Sbjct: 481 KGNVKMG---FKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPD 537

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
           ++  + L++     GK E   ++L+    +G+ V    Y+SL+
Sbjct: 538 DITYNILLEGHCKNGKAE---DLLKLRNEKGLIVDYAYYTSLV 577


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 165/361 (45%), Gaps = 18/361 (4%)

Query: 82  RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           R F L+P P + TFN+++  +C   +  E     +R+ +  G   D   Y +LI    K 
Sbjct: 190 RLFDLLPVPNVFTFNIVIDFLCKEGELVEARALFVRM-KAMGCSPDVVTYNSLIDGYGKC 248

Query: 141 GKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G ++ + + V          D V +NALI    + G +++A+    EM  +   V  + +
Sbjct: 249 GDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQ--GVVANVV 306

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T    + A    G V  A +++  +    +      YT  ++   + G  + A  + D+M
Sbjct: 307 TFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEM 366

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             +G++P+ V  + ++D     GKV  A  +L   +  G+    + Y++L+       N 
Sbjct: 367 VHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNS 426

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           ++AL+L   MK+  ++  VS    LI  LC   ++ +   +L  M   GL PNT+ Y+ +
Sbjct: 427 ERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTI 486

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSG 431
           + A  +       + LL +  + G  PN+V +  +I G+C     KA +++E +  FN  
Sbjct: 487 MDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLC-----KAGSISEAISHFNKM 541

Query: 432 R 432
           R
Sbjct: 542 R 542



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 153/335 (45%), Gaps = 8/335 (2%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---GKVDAMFEN 149
           S  + L+S+ A     + A + L  V++  +  + +    ++   A++   G V  +F+ 
Sbjct: 135 SVVDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFDL 194

Query: 150 VK-PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           +  P+   FN +I    + G +  A  +   M A      PD +T  +L+      G ++
Sbjct: 195 LPVPNVFTFNIVIDFLCKEGELVEARALFVRMKA--MGCSPDVVTYNSLIDGYGKCGDLE 252

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
              ++   + K         Y   INC S+ G  E A S + +M ++GV+ + V  S  +
Sbjct: 253 EVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFV 312

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           D     G V+ A ++  + + +G+     +Y+SL+     A     A+ L + M    L 
Sbjct: 313 DAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLV 372

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P V T   ++  LC   ++ +   VLS M+  G+  N + Y+ L+      ++ E  L L
Sbjct: 373 PNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDL 432

Query: 389 LSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
           L+Q K  G+  ++ ++  +I G+C  ++ ++A++L
Sbjct: 433 LNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSL 467



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 158/364 (43%), Gaps = 25/364 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVPNP 90
           ++G + E + L   M  +G++  +  Y +     CK+ + + +A           LVPN 
Sbjct: 317 KEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGR-LDDAIVLLDEMVHQGLVPNV 375

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
              T  M+  +C   K +E A  VL L++  G+KA+  LYTTLI     +   +   +  
Sbjct: 376 VTYTV-MVDGLCKEGKVAE-ADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLL 433

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  ++ D  ++  LI    +   VD A  +L +M      + P+ +    +M A  
Sbjct: 434 NQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAG--CGLRPNTVIYTTIMDALF 491

Query: 203 NAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            AG   +  E   ++HK    G  P V  Y   I+   + G    A S ++ M + G+ P
Sbjct: 492 KAG---KESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDP 548

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    +ALID     G +  A  ++ E  ++G+S+  + Y+SL+       N Q A  L 
Sbjct: 549 NVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALK 608

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M    L+  +      I+  C+ + + +   VLS+M   G+ P+   Y+ L+   ++ 
Sbjct: 609 TKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKL 668

Query: 380 DDVE 383
            ++E
Sbjct: 669 GNME 672



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/364 (20%), Positives = 150/364 (41%), Gaps = 48/364 (13%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENV 150
           T+N L++  +     E A+     ++  G+ A+   ++T +    K G V     +F  +
Sbjct: 272 TYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQM 331

Query: 151 K-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANA 204
           +     P+   + +L+    ++G +D A  +L EM   VH  + P+ +T   ++      
Sbjct: 332 RVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEM---VHQGLVPNVVTYTVMVDGLCKE 388

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-------- 256
           G+V  A  V  ++ +  +K    +YT  I+      + E A  + + M  KG        
Sbjct: 389 GKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLY 448

Query: 257 ---------------------------VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
                                      + P+ V  + ++D    AGK   A  +L +  +
Sbjct: 449 GTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILD 508

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            G    +++Y +L+     A +  +A+  +  M+ + L P V    ALI   C    L K
Sbjct: 509 SGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNK 568

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
            M ++++M   G+  + + Y+ L+    ++ +++    L ++  E G+  +L  + C I 
Sbjct: 569 AMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFIS 628

Query: 409 GMCS 412
           G C+
Sbjct: 629 GFCN 632


>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
 gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
          Length = 413

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 176/420 (41%), Gaps = 69/420 (16%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTL-ITTCAKSGKVDAM- 146
           P +  +N L++    + D + A  + R L QE   K +   + TL I  C  S   DA+ 
Sbjct: 9   PDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALA 68

Query: 147 -FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            F+      ++ D  V N LI    + G + +A  +L  M A  H    D  T   LM A
Sbjct: 69  VFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTA--HAFVLDVFTYSYLMDA 126

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              AG+  +A EV+  + K        VY + I+C  + G  + A  + +DM +KG++PD
Sbjct: 127 LGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPD 186

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + +ID     G+ E A+      K +  S  +++Y++L+      +   +A +L++
Sbjct: 187 CRTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFD 246

Query: 321 HMKSIKLKPTVSTM-----------------------------------NALITALCDGD 345
            M++ K  P ++T                                    NALI+  C   
Sbjct: 247 EMQANKCMPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMGHVPNSYIYNALISGFCRSG 306

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           Q+ K  E+  DM      P++ITY+IL++   R+    + + LL +   +G  P L  + 
Sbjct: 307 QVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYN 366

Query: 406 CIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 465
            +I          R+L        S   Q+E+ +T     +++E I  G  P ++  S +
Sbjct: 367 VLI----------RSL--------SMAGQVEDAYT-----LFKEMIAKGFNPDMQTYSAL 403


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 172/408 (42%), Gaps = 17/408 (4%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----N 89
           L++ G+  E I+L   M ER+     D V +    +       ++     F L+      
Sbjct: 161 LVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVK 220

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P +  +N L+   AS      A  +  L+++ GL+ D   YT+L+    +S + +   E 
Sbjct: 221 PNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREV 280

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  + KP++V +NALI A G +G +  A  +L EM  E   + PD ++I  L+ AC
Sbjct: 281 FNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEM--EKDGIQPDVVSISTLLAAC 338

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               Q+ R   + +      I      Y   I      GD+E A  +Y  M +  V PD 
Sbjct: 339 GRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDA 398

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LI  +   GK   +    ++  +  +S     YSSL+ +        +A   +  
Sbjct: 399 VTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSS 458

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK     P V T   LI A   G    +  ++  +M+  G+ P+ I  S L+ A  +  +
Sbjct: 459 MKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGE 518

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLS 427
            E  L L+   K+  +  N   +  II  C+  R ++ A  + E++ S
Sbjct: 519 PERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIEYLDS 566



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 169/358 (47%), Gaps = 23/358 (6%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAM 146
           + M++ + A     + A  +   +QE   K D  +Y +LI   +++G+         D +
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              + P R  +N +I ACG +G   +A ++  +M    + V PD +T   ++ A  N  Q
Sbjct: 74  RAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTE--NGVGPDLVTHNIVLSALKNGAQ 131

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVFL 264
             +A   ++++   N+        I I+C  + G    A  +++ M ++     PD V  
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTY 191

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++++      G+VE    I      +G+   I++Y+SL+GA ++    ++AL ++  +K 
Sbjct: 192 TSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKK 251

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             L+P + +  +L+ A     Q  K  EV + MK     PN ++Y+ L+ A      ++ 
Sbjct: 252 NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKE 311

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----RYE------KARTLNEHVLSFNSG 431
            + LL + ++DG+ P++V    ++  C R     R E      ++R ++ + +++NSG
Sbjct: 312 AVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSG 369



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 180/396 (45%), Gaps = 21/396 (5%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I      G   + ++L + M   G+   D V H    +  K+     +A  +F++
Sbjct: 83  TYNNVINACGAAGNWKKALELCKKMTENGV-GPDLVTHNIVLSALKNGAQYSKAISYFEI 141

Query: 87  V--PNPTLSTF--NMLMSVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTCAKS 140
           +   N T  TF  N+++           A ++   ++E   K   D   YT+++ +    
Sbjct: 142 MKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIY 201

Query: 141 GKVD---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+V+   A+F     E VKP+ V +N+L+ A    G    A  +   +    + + PD +
Sbjct: 202 GQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKK--NGLRPDIV 259

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +  +L+ A   + Q ++AREV+  + K + K     Y   I+     G  + A  +  +M
Sbjct: 260 SYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEM 319

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            K G+ PD V +S L+   G   ++     IL+ A+++GI +  ++Y+S + +  +  ++
Sbjct: 320 EKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDY 379

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +KALELY  M+   +KP   T N LI+      +  +++    DM    +      YS L
Sbjct: 380 EKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSL 439

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + +  ++  +       S  K+ G  P+++ +  +I
Sbjct: 440 IYSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLI 475



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 153/332 (46%), Gaps = 8/332 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC---AKSGKVDAM 146
           PT +T+N +++ C ++ + + A ++ + + E G+  D   +  +++     A+  K  + 
Sbjct: 79  PTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISY 138

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE     NV  D    N +I    + G    A ++   M        PD +T  ++M + 
Sbjct: 139 FEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSY 198

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              GQV+  + ++ ++    +K     Y   +   +  G    A ++++ + K G+ PD 
Sbjct: 199 CIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDI 258

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  ++L++  G + + E A E+  + K        +SY++L+ A  +A   ++A+ L   
Sbjct: 259 VSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHE 318

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+   ++P V +++ L+ A     Q+ +   +L   +S G+  NT+ Y+  + +     D
Sbjct: 319 MEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGD 378

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            E  L L +  +E  V P+ V +  +I   S+
Sbjct: 379 YEKALELYTSMRESNVKPDAVTYNILISGSSK 410



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/416 (20%), Positives = 164/416 (39%), Gaps = 56/416 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN LI      G + E + LL +ME+ G+                              
Sbjct: 295 SYNALIDAYGSAGMLKEAVGLLHEMEKDGI------------------------------ 324

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              P + + + L++ C   +       +L   +  G+  +   Y + I +    G  +  
Sbjct: 325 --QPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKA 382

Query: 147 FE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            E        NVKPD V +N LI+   + G    +     +M      V        +L+
Sbjct: 383 LELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDS--KVSSTKEVYSSLI 440

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
            +    G++  A   +  + K         YT  I   +  G W+ A  ++ +M   G+ 
Sbjct: 441 YSYIKQGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIP 500

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD +  S+L++     G+ E   ++++  K + I +   SY  ++ +C+  ++W+ A E+
Sbjct: 501 PDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEM 560

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM----KSLGLCPNTITYSILLV 374
            E++ S     +V T+N ++  L    +    M++   M     ++GL    +    LLV
Sbjct: 561 IEYLDSSLSSISVGTLNHVLNFLGKCGKTENMMKLFYKMVTSCSTVGLSTYAVVLRNLLV 620

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSF 428
             + +  +EV    L   ++ GV P L MF+ ++    R    + A T+ E + S 
Sbjct: 621 VGKWRKYIEV----LQWMEDSGVHPTLYMFQNVLPYIWRENGMDFAATMQEKISSL 672



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 129/275 (46%), Gaps = 20/275 (7%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           ++  +I    +   VD+A  +  EM  +     PD     +L+ A + AGQ   A  + +
Sbjct: 13  IYGMMIRLYARHNQVDQARGLFFEM--QEWRCKPDADIYNSLIHAHSRAGQWRWAINIME 70

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFA 271
            + +  I  T   Y   IN C   G+W+ A  +   MT+ GV PD     + LSAL + A
Sbjct: 71  DMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGA 130

Query: 272 GHAGKVEAAFEILQEAK--NQGISVGIISYSSL-MGACSNAKNWQKALELYEHMKSIKLK 328
            ++ K  + FEI++ A   +   ++ II +  + +G C       +A+EL+  M+  + K
Sbjct: 131 QYS-KAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCG------EAIELFNSMRERRTK 183

Query: 329 --PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
             P V T  +++ + C   Q+     +   M + G+ PN + Y+ LL A   +      L
Sbjct: 184 CPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREAL 243

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKAR 419
            + +  K++G+ P++V +  ++    R  + EKAR
Sbjct: 244 AIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAR 278



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 73/147 (49%)

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           ++Y + I   ++    + A  ++ +M +    PD    ++LI     AG+   A  I+++
Sbjct: 12  DIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMED 71

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
                I     +Y++++ AC  A NW+KALEL + M    + P + T N +++AL +G Q
Sbjct: 72  MLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILL 373
             K +     MK   +  +T T +I++
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIII 158


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 180/400 (45%), Gaps = 21/400 (5%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +++N L+     +G +++ +  L  M+  GL   D V +    N    +  + EA     
Sbjct: 209 YTFNLLVHTHCSKGTLADALATLSTMQGFGL-SPDAVTYNTLLNAHCRKGMLGEARALLA 267

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      PT  T+N L+S  A     + A +V+  +   G + D + Y  L     ++G
Sbjct: 268 RMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAG 327

Query: 142 KVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           KVD  F             PD V +N L+ AC +      A  +L EM  +   V P  +
Sbjct: 328 KVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKG--VKPTLV 385

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   ++K+    G+++ A    + I +  +      Y   I+   + G+   A ++ D+M
Sbjct: 386 THNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEM 445

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             KG+  D   L+ ++       + E A E+L     +G     +SY ++M A     N 
Sbjct: 446 VGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNP 505

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           + AL L++ M   KL P++ST N LI  LC  ++L + ++ L++    GL P+  TY+I+
Sbjct: 506 EPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNII 565

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + A  ++ D+E      ++  E+   P++V    ++ G+C
Sbjct: 566 IHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLC 605



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 166/367 (45%), Gaps = 21/367 (5%)

Query: 75  KAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +A  + FR   +L  +P   TFN+L+    S      A   L  +Q  GL  D   Y TL
Sbjct: 190 QASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTL 249

Query: 134 ITT-CAKS--GKVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +   C K   G+  A+   +K     P +  +N L++A  + G + +A  V+  M A  +
Sbjct: 250 LNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTA--Y 307

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEV--YTIAINCCSQTGD 241
             +PD  T   L      AG+VD   E +++  +    GT  P+V  Y   ++ C +   
Sbjct: 308 GFEPDLRTYNVLAMGLCQAGKVD---EAFRLKDEMERLGTALPDVVTYNTLVDACFKWRC 364

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
              A  + ++M  KGV P  V  + ++      GK+E A   L++   +G++  +I+Y++
Sbjct: 365 SSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNT 424

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+ A   A N  KA  L + M    LK    T+N ++  LC   +     E+L      G
Sbjct: 425 LIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRG 484

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKA 418
             P+ ++Y  ++ A  ++ + E  L L  Q  E  +IP++  +  +I G+C   R  E  
Sbjct: 485 FVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAI 544

Query: 419 RTLNEHV 425
             LNE V
Sbjct: 545 DKLNEFV 551



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/474 (21%), Positives = 192/474 (40%), Gaps = 64/474 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R G I +   ++E M   G     + Y+     +C++ K + EAFR    
Sbjct: 280 TYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGK-VDEAFRLKDE 338

Query: 87  VPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +       P + T+N L+  C   + S  A ++L  +++ G+K     +  ++ +  K G
Sbjct: 339 MERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEG 398

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----- 188
           K++           E + PD + +N LI A  ++G V +AF ++ EM  +   +D     
Sbjct: 399 KLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLN 458

Query: 189 ----------------------------PDHITIGALMKACANAGQVDRAREVYKMIHKY 220
                                       PD ++ G +M A       + A  ++  + + 
Sbjct: 459 TVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIER 518

Query: 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
            +  +   Y   I    +    + A    ++  +KG++PDE   + +I      G +E A
Sbjct: 519 KLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENA 578

Query: 281 FEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           F    +         +++ ++LM G C + K   KAL+L+E       K  V T N LI 
Sbjct: 579 FRFHNKMVENSFKPDVVTCNTLMNGLCLHGK-LDKALKLFESWVEKGKKVDVITYNTLIQ 637

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
           ++C    +   +    DM+  GL P+  TY+++L A       E    +L +  + G + 
Sbjct: 638 SMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSGKLS 697

Query: 400 NLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN--KWTSLALMVYREAI 451
               F C +        K  + +E  +  + G+P+ E+  K    AL  Y E +
Sbjct: 698 Q--SFACPL-------LKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERL 742



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 2/128 (1%)

Query: 288 KNQGISVGIISYSSLMGACSNAKNW--QKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           + +G+   + + ++++ A S + +   Q +L+++  +  ++L P   T N L+   C   
Sbjct: 163 RRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKG 222

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
            L   +  LS M+  GL P+ +TY+ LL A  RK  +     LL++ K DG+ P    + 
Sbjct: 223 TLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYN 282

Query: 406 CIIGMCSR 413
            ++   +R
Sbjct: 283 TLVSAFAR 290


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 133/560 (23%), Positives = 243/560 (43%), Gaps = 46/560 (8%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---- 87
           ++ LI  G + E I     M+R  +    +  +       K  K   +  RFFK +    
Sbjct: 199 FSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKT-DDVKRFFKDMIGAG 257

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--- 144
             PT+ T+N+++       D E A  +   ++  GL  D   Y ++I    K G++D   
Sbjct: 258 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 317

Query: 145 AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             FE +K     PD + +NALI    + G +    +   EM    + + P+ ++   L+ 
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKG--NGLKPNVVSYSTLVD 375

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A    G + +A + Y  + +  +      YT  I+   + G+   A  + ++M + GV  
Sbjct: 376 AFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEW 435

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V  +ALID    A +++ A E+  +    G+   + SY++L+     AKN  +ALEL 
Sbjct: 436 NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELL 495

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             +K   +KP +      I  LC  +++     V+++MK  G+  N++ Y+ L+ A  + 
Sbjct: 496 NELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 555

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY-EKA-----RTLNEHVLSFNSG- 431
            +   GL LL + KE  +   +V F  +I G+C  +   KA     R  N+  L  N+  
Sbjct: 556 GNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAI 615

Query: 432 -----RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA----DIRERLV 482
                    ++     A  ++ + +  G +P     + ++       N      +R+++ 
Sbjct: 616 FTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMA 675

Query: 483 ENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP----CVSF----KEI 532
           E +G+  D L  +   SL+ G    +   +A S LEE    GI P    C+S      E+
Sbjct: 676 E-IGMKLDLLAYT---SLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYEL 731

Query: 533 PVVVDARKLEIHTAKVYLLT 552
             + +A +L+ +  K  LLT
Sbjct: 732 GCIDEAVELQSYLMKHQLLT 751



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 141/301 (46%), Gaps = 16/301 (5%)

Query: 124 KADCKLYTTLITTCAKSGKVDAMFENV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
           KADC ++  L +T            NV  P   VF+AL +     G ++ A    ++M  
Sbjct: 172 KADCDVFDVLWST-----------RNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKR 220

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
               V P   +   L+   A  G+ D  +  +K +     + T   Y I I+C  + GD 
Sbjct: 221 --FRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDV 278

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           E A  ++++M  +G++PD V  +++ID  G  G+++      +E K+      +I+Y++L
Sbjct: 279 EAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNAL 338

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +            LE Y  MK   LKP V + + L+ A C    + + ++   DM+ +GL
Sbjct: 339 INCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 398

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKART 420
            PN  TY+ L+ A  +  ++     L ++  + GV  N+V +  +I G+C + R ++A  
Sbjct: 399 VPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEE 458

Query: 421 L 421
           L
Sbjct: 459 L 459



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 143/317 (45%), Gaps = 20/317 (6%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++Y  LI    + G +S+   L  +M + G+      Y A    +C +++ +KEA   F 
Sbjct: 403 YTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAER-MKEAEELFG 461

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P L+++N L+     +K+ + A ++L  ++  G+K D  LY T I       
Sbjct: 462 KMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLE 521

Query: 142 KVDA----MFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K++A    M E     +K + +++  L+ A  +SG       +L EM      ++   +T
Sbjct: 522 KIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKE--LDIEVTVVT 579

Query: 194 IGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              L+        V +A + +  I + + ++    ++T  I+   +    E A ++++ M
Sbjct: 580 FCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQM 639

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            +KG++PD    ++L+D     G V  A  +  +    G+ + +++Y+SL+   S+    
Sbjct: 640 VQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQL 699

Query: 313 QKALELYEHMKSIKLKP 329
           QKA    E M    + P
Sbjct: 700 QKARSFLEEMIGEGIHP 716



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 158/393 (40%), Gaps = 63/393 (16%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN LI    + G++   ++   +M+  GL      Y       CK +  +++A +F+  
Sbjct: 334 TYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCK-EGMMQQAIKFYVD 392

Query: 85  ----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                LVPN    T+  L+       +   AF++   + + G++ +   YT LI     +
Sbjct: 393 MRRVGLVPNE--YTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDA 450

Query: 141 ----------GKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
                     GK+D     V P+   +NALI    ++  +DRA ++L E+      + PD
Sbjct: 451 ERMKEAEELFGKMDT--AGVIPNLASYNALIHGFVKAKNMDRALELLNELKG--RGIKPD 506

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG---------- 240
            +  G  +    +  +++ A+ V   + +  IK    +YT  ++   ++G          
Sbjct: 507 LLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLD 566

Query: 241 -----DWEFA----CSVYDDMTKKGVIPDEV-----------------FLSALIDFAGHA 274
                D E      C + D + K  ++   V                   +A+ID     
Sbjct: 567 EMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKD 626

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
            +VEAA  + ++   +G+     +Y+SLM       N  +AL L + M  I +K  +   
Sbjct: 627 NQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAY 686

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            +L+  L   +QL K    L +M   G+ P+ +
Sbjct: 687 TSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEV 719


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 138/317 (43%), Gaps = 13/317 (4%)

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQS 167
           RLV +  ++ D   Y TLI      G+         D       PD V +  L+ A  + 
Sbjct: 155 RLVADMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKR 214

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
               +A  +L EM+ +     PD +T   ++      G+V+ A E  K +  Y  +    
Sbjct: 215 SGYKQAMKLLDEMHDK--GCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTV 272

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y I +        WE A  + ++M  KG  P+ V  + LI F    G VE A E+L++ 
Sbjct: 273 SYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQM 332

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
              G +   +SY+ L+ A    K   KA+E  E M S    P + + N L+TALC   ++
Sbjct: 333 PQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEV 392

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
              +E+L  +K  G  P  I+Y+ ++    +    +  L LL +    G+ P+++ +  I
Sbjct: 393 DVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTI 452

Query: 408 I-GMC--SRRYEKARTL 421
             G+C   R  E  RT 
Sbjct: 453 ASGLCREDRIEEAVRTF 469



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 179/402 (44%), Gaps = 19/402 (4%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V    ++YN LIR    +GR S  + +LEDM R+G L     Y       CK +   K+A
Sbjct: 162 VEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCK-RSGYKQA 220

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT- 135
            +    + +    P + T+N++++        E A + L+ +   G + +   Y  ++  
Sbjct: 221 MKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKG 280

Query: 136 --TCAKSGKVDAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             T  +    + + E +      P+ V FN LI+   + G V+ A +VL +M    +   
Sbjct: 281 LFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQ--YGCT 338

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ ++   L+ A     ++ +A E  +++           Y   +    + G+ + A  +
Sbjct: 339 PNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIEL 398

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
              +  KG  P  +  + +ID    AGK + A E+L E  ++G+   II+YS++      
Sbjct: 399 LHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCR 458

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
               ++A+  +  ++ + ++PT +  NA++  LC   +    +++ + M S G  PN  T
Sbjct: 459 EDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNEST 518

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
           Y+IL+     +  V+    L +Q    GV+   +M K  I M
Sbjct: 519 YTILVEGLAYEGLVKEARELFAQLCSRGVVNKKLMKKGSIKM 560



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 127/282 (45%), Gaps = 7/282 (2%)

Query: 137 CAKSGKVDA--MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           CA     DA  +     PD +V+NA++     +G +D A  ++A+M     PV+PD  T 
Sbjct: 115 CASGRTADARRVLAASGPDVMVYNAMVAGYCGAGQLDAARRLVADM-----PVEPDAYTY 169

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L++     G+   A  V + + +         YTI +    +   ++ A  + D+M  
Sbjct: 170 NTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHD 229

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           KG  PD V  + +++     G+VE A E L+   + G     +SY+ ++     A+ W+ 
Sbjct: 230 KGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWED 289

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A +L E M      P V T N LI+ LC    +   MEVL  M   G  PN+++Y+ LL 
Sbjct: 290 AEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLH 349

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
           A  ++  +   +  +      G  P++V +  ++    R  E
Sbjct: 350 AFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGE 391


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 151/301 (50%), Gaps = 11/301 (3%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKV-------DAM-FENVKPDRVVFNALITACGQSGAVD 171
           +AGL  + KL+  L+    + G++       D M    V+   V FN +I+   ++G +D
Sbjct: 233 DAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLD 292

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
            A  +   M+     V PD  T GAL++     G+++ AR V++ +    +K    V+TI
Sbjct: 293 GAETLHRRMSEA--GVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTI 350

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            I+   + GD E    ++ +M ++GV PD V  +A+++    A  +++A  I+ E ++ G
Sbjct: 351 LIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAG 410

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           +    ++Y++L+      +    A+E+ ++M +  +     T  ALI+ L    +     
Sbjct: 411 LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAE 470

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
            VL +M   GL P+  TY++++ A  RK DV+ GL LL + +  G  P +V +  I+ G 
Sbjct: 471 RVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGF 530

Query: 411 C 411
           C
Sbjct: 531 C 531



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 143/331 (43%), Gaps = 11/331 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P    FN+LM       +   A  V   +Q  G++     + T+I+   ++G +D     
Sbjct: 238 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 297

Query: 146 ---MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
              M E  V PD   + ALI    + G ++ A  V  +M      + P+ +    L+ A 
Sbjct: 298 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGR--GMKPNAVVFTILIDAH 355

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G  +   E+++ + +  ++     Y   +N   +  D + A  +  +M   G+ PD 
Sbjct: 356 CKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDT 415

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LID      +++ A EI Q    +G+ +  ++Y++L+   S A     A  +   
Sbjct: 416 VTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGE 475

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    L+P  +T   +I A C    +   + +L +M++ G  P  +TY++++    +   
Sbjct: 476 MMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 535

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           ++   MLL+     GV P+ + +  ++ G C
Sbjct: 536 MKNADMLLNAMINIGVSPDDITYNILLDGHC 566



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 113/238 (47%), Gaps = 3/238 (1%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+      LM+     G++  A+ V+  +    ++ T   +   I+   + GD + A ++
Sbjct: 238 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 297

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +  M++ GV PD     ALI      G++E A  + ++   +G+    + ++ L+ A   
Sbjct: 298 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCK 357

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
             + +  LEL+  M+   ++P   T NA++  LC    L     ++ +M+S GL P+T+T
Sbjct: 358 KGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVT 417

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS---RRYEKARTLNE 423
           Y+ L+    +++++++ + +      +GV  + V +  +I   S   R  +  R L E
Sbjct: 418 YTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGE 475



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 161/389 (41%), Gaps = 57/389 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPT 91
           L+R G ++   ++ ++M+ +G+      ++     +C++     A     R  +    P 
Sbjct: 250 LVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPD 309

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
           + T+  L+         E A  V   +   G+K +  ++T LI    K G  + M E   
Sbjct: 310 VYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHR 369

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 V+PD V +NA++    ++  +  A  ++ EM +    + PD +T   L+     
Sbjct: 370 EMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSA--GLRPDTVTYTTLIDGYCK 427

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             ++D A E+ + +    +      YT  I+  S+ G    A  V  +M + G+ PD   
Sbjct: 428 EEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTT 487

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + +ID     G V+    +L+E +N+G   G+++Y                        
Sbjct: 488 YTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTY------------------------ 523

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CE--RKD 380
                      N ++   C   Q+     +L+ M ++G+ P+ ITY+ILL   C+  +  
Sbjct: 524 -----------NVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVT 572

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           D+E     L  AK  G +P+L ++  I+G
Sbjct: 573 DIEE----LKSAK--GTVPDLGVYTSIVG 595



 Score = 39.3 bits (90), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 6/122 (4%)

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +G  ++A+N      +++ M+S  ++ TV + N +I+ +C    L     +   M   G+
Sbjct: 253 LGELASAQN------VFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGV 306

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
            P+  TY  L+    R   +E    +  +    G+ PN V+F  +I    ++ +    L 
Sbjct: 307 TPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLE 366

Query: 423 EH 424
            H
Sbjct: 367 LH 368


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 183/406 (45%), Gaps = 22/406 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFK 85
           ++N LI      G +S+ +    D+  KG   +D+  +    N +CK+ +  ++A +  +
Sbjct: 127 TFNTLINGFCINGMVSKAMAFRLDLMAKGY-PLDEFSYGSLINGLCKNGQT-RDALQLLQ 184

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P L T++ ++      +    A ++  LV   G+  D   Y +LI  C   G
Sbjct: 185 KMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVG 244

Query: 142 K-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +       +  M   N+ PD   FN L+ A  + G +  A  V A M        PD +T
Sbjct: 245 QWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGE--KPDIVT 302

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             ALM+    +  V  ARE++  + K  ++     Y + IN   +    + A  ++ ++ 
Sbjct: 303 YNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIR 362

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            K ++P+    ++LID     G++    E++ E  ++G S  I++Y+  + A   +K ++
Sbjct: 363 CKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYE 422

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA+ L+  +    + P     + ++   C G++L    E L  +   G CPN  TY+I++
Sbjct: 423 KAISLFRQIVQ-GIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMI 481

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
            A  +    +  + LLS+  ++   P+ V F+ IIG    R E  +
Sbjct: 482 NALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDK 527



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/423 (22%), Positives = 176/423 (41%), Gaps = 37/423 (8%)

Query: 18  HANYAHDVSEQLHSYNRLIRQ-------------------GRISECIDLLEDMERKGLLD 58
           H    H V + L S+NR++R+                   G     I L   +  KG+  
Sbjct: 29  HPPKFHTVDDTLLSFNRMLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITP 88

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPTLSTFNMLMS-VCASSKDSEGAFQ 113
                     N    Q  +  AF       K+   P + TFN L++  C +   S+    
Sbjct: 89  SIATL-TILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAF 147

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAMFEN-VKPDRVVFNALITACG 165
            L L+ + G   D   Y +LI    K+G+       +  M E+ V+P+ + ++ +I    
Sbjct: 148 RLDLMAK-GYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLC 206

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
           +   +  A  + + + +    VD   +   +L+  C + GQ   A  +  M+ + NI   
Sbjct: 207 KDRLIADALRLFSLVTSRGILVDV--VAYNSLIHGCCSVGQWREATRLLTMMVRGNINPD 264

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
              + I ++   + G    A  V+  M K+G  PD V  +AL++    +  V  A E+  
Sbjct: 265 DYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFN 324

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
               +G+   +++Y+ L+          +A+ L++ ++   L P ++T N+LI  LC   
Sbjct: 325 RMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLG 384

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           ++    E++ +M   G  P+ +TY+I L A  +    E  + L  Q  + G+ P+  M+ 
Sbjct: 385 RMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPDFYMYD 443

Query: 406 CII 408
            I+
Sbjct: 444 VIV 446


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 169/402 (42%), Gaps = 27/402 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDM----ERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
           +Y+ L+R     G++     LL+ M     R   +  + +    F +  K     K+AFR
Sbjct: 364 TYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSK-----KDAFR 418

Query: 83  FFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
               + N    P + T+++++     S + E A  +L  +   GLK +  +Y  LI+   
Sbjct: 419 LLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYC 478

Query: 139 KSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           + G V    E        NV PD   +N+LI    + G V+ +    A+M  +   + P+
Sbjct: 479 REGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQM--QERGLLPN 536

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
             T   L+      G ++ A ++ + +    +K    +Y   +    ++ D E   S + 
Sbjct: 537 EFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFK 596

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            M  +GV+ D      LI     +G +EAAF +L   +  G    +  YSSL+       
Sbjct: 597 SMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTA 656

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
           + +KA  + + M    + P +   NALI  LC    +     V + + + GL PN +TY+
Sbjct: 657 DREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYT 716

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
            L+    +  D+     L ++    G+ P+  ++  +   CS
Sbjct: 717 SLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCS 758



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 181/399 (45%), Gaps = 22/399 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----KAIKEAF 81
           +YN LI    R G + E     +DME  GL+     Y A    +CKS+     KA+ +  
Sbjct: 259 TYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEM 318

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              +L PN  +  +  L+       +++ AF++++ +  AG++ +   Y  L+    K G
Sbjct: 319 SCAELKPN--VVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMG 376

Query: 142 KVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++D         + ++ +PD + +N +I    +  +   AF +L+EM  E   + P+  T
Sbjct: 377 QMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEM--ENAGISPNVYT 434

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              ++     +G+ ++A ++ + +    +K    VY   I+   + G+   AC ++D MT
Sbjct: 435 YSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMT 494

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           K  V+PD    ++LI      G+VE + +   + + +G+     +YS L+       + +
Sbjct: 495 KVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLE 554

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A +L + M    LKP       L+ +    D + K       M   G+  +   Y IL+
Sbjct: 555 SAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI 614

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
                  ++E    +LS  +++G +P++ ++  +I G+C
Sbjct: 615 HNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLC 653



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 118/256 (46%), Gaps = 2/256 (0%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           + V +N LI    +SGAV+ AF    +M  E + + PD  T GAL+     + + + A+ 
Sbjct: 256 NTVTYNVLIAGLCRSGAVEEAFGFKKDM--EDYGLVPDGFTYGALINGLCKSRRSNEAKA 313

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           +   +    +K    VY   I+   + G+ + A  +  +M   GV P+++    L+    
Sbjct: 314 LLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLC 373

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
             G+++ A  +L++          I+Y+ ++       + + A  L   M++  + P V 
Sbjct: 374 KMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVY 433

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T + +I  LC   +  K  ++L +M + GL PN   Y+ L+    R+ +V +   +  + 
Sbjct: 434 TYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM 493

Query: 393 KEDGVIPNLVMFKCII 408
            +  V+P+L  +  +I
Sbjct: 494 TKVNVLPDLYCYNSLI 509



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 2/233 (0%)

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           G+ ++A     + D A++V   + +         Y + I    ++G  E A     DM  
Sbjct: 226 GSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMED 285

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G++PD     ALI+    + +   A  +L E     +   ++ Y++L+       N  +
Sbjct: 286 YGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADE 345

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ++ + M +  ++P   T + L+  LC   Q+ +   +L  M      P+TITY++++ 
Sbjct: 346 AFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIE 405

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHV 425
              R    +    LLS+ +  G+ PN+  +  +I G+C S   EKA  L E +
Sbjct: 406 GHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM 458



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 153/396 (38%), Gaps = 68/396 (17%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H Y   ++ G +     L++ M   GL   D +Y     +  KS    K +  F  ++ 
Sbjct: 544 IHGY---LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLD 600

Query: 89  NPTL---STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
              +     + +L+   +SS + E AF+VL  +++ G   D  +Y++LI+   K+   + 
Sbjct: 601 QGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREK 660

Query: 146 MF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
            F        + V P+ V +NALI    +SG +  A +V   + A+   + P+ +T  +L
Sbjct: 661 AFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAK--GLVPNCVTYTSL 718

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM----- 252
           +      G +  A  +Y  +    I     VY++    CS  GD E A  + ++M     
Sbjct: 719 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 778

Query: 253 -----------------------------TKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                                          +G++P+ + +  +I     AGK+     I
Sbjct: 779 ASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTI 838

Query: 284 LQEAKNQGISVGIISYSSL-MGACSNAK-----------------NWQKALELYEHMKSI 325
             E + +        +SSL M   +  K                 N  KAL L + + + 
Sbjct: 839 FVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAK 898

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
                 S+  A++  LC   +L + + +L +M   G
Sbjct: 899 SAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRG 934


>gi|297827821|ref|XP_002881793.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
 gi|297327632|gb|EFH58052.1| EMB2654 [Arabidopsis lyrata subsp. lyrata]
          Length = 822

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 184/396 (46%), Gaps = 21/396 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G   + +++ + M   G+   D V H    +  KS +   +A  +F+L
Sbjct: 215 TYNNLINACGSSGNWRQALEVCKKMTDNGV-GPDLVTHNIVLSAYKSGRQYSKALSYFEL 273

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE--AGLKADCKLYTTLITTCAKS 140
           +      P  +TFN+++   +    S  A  V   +++  A  + D   +T+++   +  
Sbjct: 274 MKGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVR 333

Query: 141 GKVD---AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+++   A+FE      +KP+ V +NAL+ A    G  + A  V  ++  + + + PD +
Sbjct: 334 GEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDI--KRNGIVPDVV 391

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +  +L+ +   + Q  +A+EV+ M+ K   K     Y   I+     G    A  ++  M
Sbjct: 392 SYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQM 451

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            + G  P+ V +  L+     + K      +L  A+++GI++   +Y+S +G+  NA   
Sbjct: 452 EQDGTKPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAEL 511

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +KA+ LY+ M+  K+K    T   LI+  C   + P+ +  L +M+ L +      YS +
Sbjct: 512 EKAIALYQTMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSV 571

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L A  ++  V     + +Q K  G  P+++ +  ++
Sbjct: 572 LCAYSKQGQVTEAESIFNQMKMAGCKPDVIAYTSML 607



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 156/348 (44%), Gaps = 14/348 (4%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAM 146
           +NM++ + A     + A  +   +Q+   K D + Y  LI    ++G+         D +
Sbjct: 146 YNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDML 205

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              + P R  +N LI ACG SG   +A +V  +M    + V PD +T   ++ A  +  Q
Sbjct: 206 RAAIAPSRSTYNNLINACGSSGNWRQALEVCKKMTD--NGVGPDLVTHNIVLSAYKSGRQ 263

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV--IPDEVFL 264
             +A   ++++    ++     + I I C S+ G    A  V++ M  K     PD V  
Sbjct: 264 YSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTF 323

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++++      G++E    + +    +G+   I+SY++LMGA +     + AL ++  +K 
Sbjct: 324 TSIMHLYSVRGEIENCRAVFEAMLAEGLKPNIVSYNALMGAYAVHGMSENALSVFGDIKR 383

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             + P V +  +L+ +     Q  K  EV   M+     PN +TY+ L+ A      +  
Sbjct: 384 NGIVPDVVSYTSLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAE 443

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
            + +  Q ++DG  PN+V    ++  CSR  +K     E VLS    R
Sbjct: 444 AVEIFRQMEQDGTKPNVVSVCTLLAACSRSKKKVNV--ETVLSAAQSR 489



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 147/341 (43%), Gaps = 10/341 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---GKVDAM 146
           P + ++N LM   A    SE A  V   ++  G+  D   YT+L+ +  +S   GK   +
Sbjct: 353 PNIVSYNALMGAYAVHGMSENALSVFGDIKRNGIVPDVVSYTSLLNSYGRSRQPGKAKEV 412

Query: 147 F-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F     E  KP+ V +NALI A G +G +  A ++  +M  E     P+ +++  L+ AC
Sbjct: 413 FLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQM--EQDGTKPNVVSVCTLLAAC 470

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           + + +      V        I      Y  AI       + E A ++Y  M KK V  D 
Sbjct: 471 SRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQTMRKKKVKADS 530

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LI  +    K   A   L+E ++  I +    YSS++ A S      +A  ++  
Sbjct: 531 VTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQVTEAESIFNQ 590

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK    KP V    +++ A    ++  K  E+  +M++ G+ P++I  S L+ A  +   
Sbjct: 591 MKMAGCKPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQ 650

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
                +L+   +E  V     +F  I   C+   E  R ++
Sbjct: 651 PSNVFVLMDLMREKEVPFTGAVFFEIFSACNTLQEWKRAID 691



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 125/258 (48%), Gaps = 3/258 (1%)

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           R  F  LI    + G ++   +V   M ++ +    + I    +++  A    VD+AR +
Sbjct: 107 RKNFPVLIRELSRRGCIELCVNVFKWMKSQKNYCARNDI-YNMMIRLHARHNWVDQARGL 165

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           +  + K++ K   E Y   IN   + G W +A ++ DDM +  + P     + LI+  G 
Sbjct: 166 FFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGS 225

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           +G    A E+ ++  + G+   +++++ ++ A  + + + KAL  +E MK  K++P  +T
Sbjct: 226 SGNWRQALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTT 285

Query: 334 MNALITALCDGDQLPKTMEVLSDMKS-LGLC-PNTITYSILLVACERKDDVEVGLMLLSQ 391
            N +I  L    Q  + ++V + M+     C P+ +T++ ++     + ++E    +   
Sbjct: 286 FNIIIYCLSKLGQSSQALDVFNSMRDKRAECRPDVVTFTSIMHLYSVRGEIENCRAVFEA 345

Query: 392 AKEDGVIPNLVMFKCIIG 409
              +G+ PN+V +  ++G
Sbjct: 346 MLAEGLKPNIVSYNALMG 363



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 79/397 (19%), Positives = 162/397 (40%), Gaps = 18/397 (4%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           L+SY R  + G+  E   ++    RK     + V +    +   S   + EA   F+ + 
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKP----NVVTYNALIDAYGSNGFLAEAVEIFRQME 452

Query: 89  N----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P + +   L++ C+ SK       VL   Q  G+  +   Y + I +   + +++
Sbjct: 453 QDGTKPNVVSVCTLLAACSRSKKKVNVETVLSAAQSRGINLNTAAYNSAIGSYINAAELE 512

Query: 145 ---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
              A+++      VK D V F  LI+   +      A   L EM     P+  +     +
Sbjct: 513 KAIALYQTMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKE--VYSS 570

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ A +  GQV  A  ++  +     K     YT  ++  + +  W  AC ++ +M   G
Sbjct: 571 VLCAYSKQGQVTEAESIFNQMKMAGCKPDVIAYTSMLHAYNASEKWGKACELFLEMEANG 630

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD +  SAL+      G+    F ++   + + +      +  +  AC+  + W++A+
Sbjct: 631 IEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEVPFTGAVFFEIFSACNTLQEWKRAI 690

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +L + M       ++   N ++       ++   M++   + + G+  N  TY+ILL   
Sbjct: 691 DLIQMMDPYLPSLSIGLTNQMLYLFGKSGKVEAMMKLFYKIIASGVEINFKTYAILLEHL 750

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
               +    + +L    + G+ P+  M++ II    R
Sbjct: 751 LAVGNWRKYIEVLEWMSDAGIQPSNQMYRDIISFGER 787


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 163/381 (42%), Gaps = 52/381 (13%)

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F  F L+ N    P+L T N L+S    + + + ++QV  ++   G+  D  L++T++  
Sbjct: 147 FELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNA 206

Query: 137 CAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
               G+VD   E         V P+ V +N +I    ++G +D AF    +M  E   V 
Sbjct: 207 FCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKE--RVK 264

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P  +T G L+       + D A  + K +          VY   I+   + G+   A  +
Sbjct: 265 PSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQI 324

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE------AKNQGISVGIISY--- 299
            DDM   G+ P+ V  ++LI     + ++E A  +L+E        NQG    +I     
Sbjct: 325 RDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCL 384

Query: 300 -----SSLM----------------------GACSNAKNWQKALELYEHMKSIKLKPTVS 332
                S+L+                      G C N K   +A+EL+  +          
Sbjct: 385 KCRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQ-SEAIELWYRLLEKGFAANTV 443

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T NALI  LC+     +  ++L +M   GL  ++I+Y+ L++AC ++  VE G  L  + 
Sbjct: 444 TSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEM 503

Query: 393 KEDGVIPNLVMFKCII-GMCS 412
              G+ P++  +  ++ G+C+
Sbjct: 504 VRRGIQPDMYTYNMLLHGLCN 524



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 139/310 (44%), Gaps = 12/310 (3%)

Query: 72  KSQKAIKEAFRFF-KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           K  +AI+  +R   K     T+++  ++  +C +    E A ++L+ + E GL  D   Y
Sbjct: 422 KQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAA-KLLKEMLERGLVLDSISY 480

Query: 131 TTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
            TLI  C K GKV+  F+         ++PD   +N L+      G ++ A  +  E   
Sbjct: 481 NTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKK 540

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
             +   PD  T G ++     A +V+   ++++ +    I+    VY   I    + G+ 
Sbjct: 541 NGNF--PDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNM 598

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
             A  + DDM  +G+       S+LI    + G V++A ++L E + +G+S  ++ Y++L
Sbjct: 599 REAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTAL 658

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +G         K   + + M    + P   T   +I   C    +    ++L++M   G+
Sbjct: 659 IGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGI 718

Query: 363 CPNTITYSIL 372
            P+ +TY+ L
Sbjct: 719 VPDAVTYNAL 728



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 188/424 (44%), Gaps = 19/424 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N     GR+ + I+L   ME+ G+      Y+     +CK+ + + EAF+F + +     
Sbjct: 205 NAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGR-LDEAFQFKEKMEKERV 263

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P+L T+ +L++     +  + A  +L+ + + G   +  +Y TLI    + G +     
Sbjct: 264 KPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQ 323

Query: 144 --DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             D M  N + P+ V  N+LI    +S  ++ A  +L EM      ++    T   + + 
Sbjct: 324 IRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFT-SVIHRL 382

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           C    + D A      +   N K    + T+ ++   Q G    A  ++  + +KG   +
Sbjct: 383 CLKC-RFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAAN 441

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  +ALI     AG  E A ++L+E   +G+ +  ISY++L+ AC      ++  +L E
Sbjct: 442 TVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKE 501

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    ++P + T N L+  LC+  ++ +   +  + K  G  P+  TY I++    + +
Sbjct: 502 EMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKAN 561

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENK 438
            VE G  L  +     +  N V++  +I   C      +A  L + + S   G PQ    
Sbjct: 562 RVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRS--RGIPQTSAT 619

Query: 439 WTSL 442
           ++SL
Sbjct: 620 YSSL 623



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/391 (20%), Positives = 167/391 (42%), Gaps = 19/391 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-----SQKAIKEAFRFFKLV 87
           N L++  R  E   +L++M  +G    + VY+      C+     +   I++      + 
Sbjct: 275 NGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGIS 334

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-- 145
           PN    T N L+     S   E A  +L  +   G   +   +T++I       + D+  
Sbjct: 335 PNSV--TCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSAL 392

Query: 146 ------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                 +  N KP+  +   L++   Q+G    A ++   +  +    +   +T  AL+ 
Sbjct: 393 LFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANT--VTSNALIH 450

Query: 200 ACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
               AG  + A ++ K M+ +  +  +    T+ + CC + G  E    + ++M ++G+ 
Sbjct: 451 GLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKE-GKVEEGFKLKEEMVRRGIQ 509

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD    + L+    + GK+E A  +  E K  G      +Y  ++     A   ++  +L
Sbjct: 510 PDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKL 569

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++ M ++K++        LI A C+   + +   +  DM+S G+   + TYS L+     
Sbjct: 570 FQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSN 629

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
              V+    LL + +++G+ PN+V +  +IG
Sbjct: 630 IGLVDSANQLLDEMRKEGLSPNVVCYTALIG 660



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 92/183 (50%), Gaps = 4/183 (2%)

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GAC 306
           V+D M   GV PD    S +++     G+V+ A E+ ++ +  G++  +++Y++++ G C
Sbjct: 184 VFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLC 243

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            N +   +A +  E M+  ++KP++ T   LI  L   ++  +   +L +M   G  PN 
Sbjct: 244 KNGR-LDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNN 302

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEH 424
           + Y+ L+    R  ++   L +      +G+ PN V    +I G C S + E A  L E 
Sbjct: 303 VVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEE 362

Query: 425 VLS 427
           +L+
Sbjct: 363 MLT 365



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/308 (21%), Positives = 125/308 (40%), Gaps = 60/308 (19%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +   +++YN L+      G+I E   L  + ++ G       Y       CK+ + ++E 
Sbjct: 508 IQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANR-VEEG 566

Query: 81  FRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            + F+ +    +      +  L+     + +   AF++   ++  G+      Y++LI  
Sbjct: 567 EKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHG 626

Query: 137 CAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
            +  G VD+          E + P+ V + ALI    + G + +   +L EM+  ++ V 
Sbjct: 627 LSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQEMS--INNVH 684

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ IT                                   YTI IN   + G+ + A  +
Sbjct: 685 PNKIT-----------------------------------YTIMINGHCKLGNMKAAAKL 709

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            ++M +KG++PD V  +AL +     GK+E A ++       GIS+  I+Y++L+     
Sbjct: 710 LNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDG--- 766

Query: 309 AKNWQKAL 316
              W K L
Sbjct: 767 ---WHKPL 771


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 151/301 (50%), Gaps = 11/301 (3%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKV-------DAM-FENVKPDRVVFNALITACGQSGAVD 171
           +AGL  + KL+  L+    + G++       D M    V+   V FN +I+   ++G +D
Sbjct: 109 DAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLD 168

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
            A  +   M+     V PD  T GAL++     G+++ AR V++ +    +K    V+TI
Sbjct: 169 GAETLHRRMSEA--GVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTI 226

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            I+   + GD E    ++ +M ++GV PD V  +A+++    A  +++A  I+ E ++ G
Sbjct: 227 LIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAG 286

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           +    ++Y++L+      +    A+E+ ++M +  +     T  ALI+ L    +     
Sbjct: 287 LRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAE 346

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
            VL +M   GL P+  TY++++ A  RK DV+ GL LL + +  G  P +V +  I+ G 
Sbjct: 347 RVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGF 406

Query: 411 C 411
           C
Sbjct: 407 C 407



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 143/331 (43%), Gaps = 11/331 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P    FN+LM       +   A  V   +Q  G++     + T+I+   ++G +D     
Sbjct: 114 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 173

Query: 146 ---MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
              M E  V PD   + ALI    + G ++ A  V  +M      + P+ +    L+ A 
Sbjct: 174 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCG--RGMKPNAVVFTILIDAH 231

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G  +   E+++ + +  ++     Y   +N   +  D + A  +  +M   G+ PD 
Sbjct: 232 CKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDT 291

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LID      +++ A EI Q    +G+ +  ++Y++L+   S A     A  +   
Sbjct: 292 VTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGE 351

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    L+P  +T   +I A C    +   + +L +M++ G  P  +TY++++    +   
Sbjct: 352 MMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ 411

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           ++   MLL+     GV P+ + +  ++ G C
Sbjct: 412 MKNADMLLNAMINIGVSPDDITYNILLDGHC 442



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 161/389 (41%), Gaps = 57/389 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPT 91
           L+R G ++   ++ ++M+ +G+      ++     +C++     A     R  +    P 
Sbjct: 126 LVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPD 185

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
           + T+  L+         E A  V   +   G+K +  ++T LI    K G  + M E   
Sbjct: 186 VYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHR 245

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 V+PD V +NA++    ++  +  A  ++ EM +    + PD +T   L+     
Sbjct: 246 EMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSA--GLRPDTVTYTTLIDGYCK 303

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             ++D A E+ + +    +      YT  I+  S+ G    A  V  +M + G+ PD   
Sbjct: 304 EEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTT 363

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + +ID     G V+    +L+E +N+G   G+++Y                        
Sbjct: 364 YTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTY------------------------ 399

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CE--RKD 380
                      N ++   C   Q+     +L+ M ++G+ P+ ITY+ILL   C+  +  
Sbjct: 400 -----------NVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVT 448

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           D+E     L  AK  G +P+L ++  I+G
Sbjct: 449 DIEE----LKSAK--GTVPDLGVYTSIVG 471



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 113/238 (47%), Gaps = 3/238 (1%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+      LM+     G++  A+ V+  +    ++ T   +   I+   + GD + A ++
Sbjct: 114 PEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETL 173

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +  M++ GV PD     ALI      G++E A  + ++   +G+    + ++ L+ A   
Sbjct: 174 HRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCK 233

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
             + +  LEL+  M+   ++P   T NA++  LC    L     ++ +M+S GL P+T+T
Sbjct: 234 KGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVT 293

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS---RRYEKARTLNE 423
           Y+ L+    +++++++ + +      +GV  + V +  +I   S   R  +  R L E
Sbjct: 294 YTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGE 351


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 179/428 (41%), Gaps = 24/428 (5%)

Query: 23  HDVSEQLHSYN----RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           + V+  L ++N     L + G++   +D  E     G       Y A    + K++K I+
Sbjct: 124 YGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKK-IQ 182

Query: 79  EAFRFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +A     K+  N   PT++T+N L++        E A  +LR + + G   D   YT+LI
Sbjct: 183 DAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLI 242

Query: 135 TTCAKSGKVDAMFENVKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               K  +    ++  K         D V + ALI    Q+G + +A  V   M ++   
Sbjct: 243 DGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQ--G 300

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             PD +T+  ++     AG++  A  ++K +    +     VY+  I+   +    + A 
Sbjct: 301 CVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCAL 360

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +   M K    PD +  + LID    +G VEAA     E    G    + +Y+ L+   
Sbjct: 361 EMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGF 420

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
             A N   A  +++ M S    P V T   LI+ LC   QL K       MK  G  P++
Sbjct: 421 CKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDS 480

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL 426
             YS L+    +   +E G ML  + +  GV  +    + I  +C     KA  ++E V 
Sbjct: 481 FVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQTRTRLIFHLC-----KANRVDEAVS 535

Query: 427 SFNSGRPQ 434
            FN+ R +
Sbjct: 536 LFNAIRKE 543



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 156/373 (41%), Gaps = 53/373 (14%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQE----------------------------- 120
           P + T+N+L++    +++ E AF V+R ++E                             
Sbjct: 92  PDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMD 151

Query: 121 -------AGLKADCKLYTTLITTCAKSGKVD---AMFENV-----KPDRVVFNALITACG 165
                   G   D   YT ++   AK+ K+    A+ E +      P    +NAL+    
Sbjct: 152 HFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLC 211

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG- 224
           + G ++ A D+L ++    +   PD +T  +L+      G+  R+ E YK+  +  ++G 
Sbjct: 212 KMGRLEEAIDLLRKIVD--NGCTPDVVTYTSLIDG---LGKEKRSFEAYKLFKEMALRGL 266

Query: 225 --TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
                 YT  I    Q G    A SVY  MT +G +PD V LS +ID    AG++ AA  
Sbjct: 267 VLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVR 326

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           I +  + +G++   + YS+L+     A+    ALE+   MK     P   T N LI  LC
Sbjct: 327 IFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLC 386

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
               +        +M   G  P+  TY+IL+    +  + +    +          PN+V
Sbjct: 387 KSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVV 446

Query: 403 MFKCII-GMCSRR 414
            +  +I G+C RR
Sbjct: 447 TYGTLISGLCKRR 459



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/399 (21%), Positives = 162/399 (40%), Gaps = 53/399 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L + GR+ E IDLL  +   G                                  P +
Sbjct: 208 NGLCKMGRLEEAIDLLRKIVDNGC--------------------------------TPDV 235

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFEN 149
            T+  L+      K S  A+++ + +   GL  D   YT LI    ++GK+    ++++ 
Sbjct: 236 VTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKT 295

Query: 150 VK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           +      PD V  + +I    ++G +  A  +   M  E   + P+ +   AL+     A
Sbjct: 296 MTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSM--EARGLAPNEVVYSALIHGLCKA 353

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
            ++D A E+   + K         Y I I+   ++GD E A + +D+M + G  PD    
Sbjct: 354 RKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTY 413

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + L+     AG  +AA  +  +  +   S  +++Y +L+      +   KA   ++HMK 
Sbjct: 414 NILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKE 473

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
               P     ++L+  LC   +L     +  +M+  G+  N+ T + L+    + + V+ 
Sbjct: 474 RGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDE 532

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGM---------CSRR 414
            + L +  +++G +P+   +  II           C+RR
Sbjct: 533 AVSLFNAIRKEG-MPHPYAYNSIISTLIKSAKVNPCTRR 570


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 167/349 (47%), Gaps = 10/349 (2%)

Query: 71  CKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
           CK  +   + FR   L    P + ++N+++S   ++ D   A ++L  ++ AG   D   
Sbjct: 90  CKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFT 149

Query: 130 YTTLITTCAKSGKVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           +T +IT  A +G +D   ++++     P+ V + ALI A  ++  ++ A  +L EM    
Sbjct: 150 HTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERG 209

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
            P  P+ +T   L+ A      V  A++V K + +         +   ++   + G+ + 
Sbjct: 210 CP--PNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDD 267

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  +   M  KG+ P+ V  SALID    + K   A E+L+E K +G++    +YS+L+ 
Sbjct: 268 ARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIH 327

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
               A   ++A ++   M      P V   +++I A C   +L +  + L +M+     P
Sbjct: 328 GLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSP 387

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPNLVMFKCII-GMC 411
           + +TY+ ++    +   +    ++L Q +E G V+P++V +  +I G+C
Sbjct: 388 DVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLC 436



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 179/420 (42%), Gaps = 21/420 (5%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           K A +A D          +   G +   +D L  M      D + V +          K 
Sbjct: 139 KSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMG----CDPNVVTYTALIAAFARAKK 194

Query: 77  IKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           ++EA +  + +      P L T+N+L+           A  V++ + E G   +   + +
Sbjct: 195 LEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNS 254

Query: 133 LITTCAKSGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           L+    K G VD         + + ++P+ V ++ALI    +S     A +VL EM  + 
Sbjct: 255 LVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEM--KT 312

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             V PD  T  AL+     A +++ A ++ + +          VY+  I+   ++G    
Sbjct: 313 RGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLE 372

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLM 303
           A     +M K+   PD V  + +ID     GK+  A  IL++ +  G +   +++YS+++
Sbjct: 373 AQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVI 432

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                +    +A +L + M      P V T   +I  LC   +L +   +L  MK  G  
Sbjct: 433 NGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCA 492

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
           PN +TY+ L+    +   V+    ++ + +  G  PNLV +  ++ G+C S R ++A+ L
Sbjct: 493 PNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQL 552



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 158/360 (43%), Gaps = 26/360 (7%)

Query: 70  VCKSQKAIKEAFRFFKLVP------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           V  S K  K A  FF+  P      + T  ++N L+ V    K    A  + R    A  
Sbjct: 49  VVNSLKDAKLALAFFRWAPASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASC 108

Query: 124 KADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFD 175
           + D   Y  +I+    +G + A  E           PD      +ITA   +G +D A D
Sbjct: 109 EPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMD 168

Query: 176 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIA 232
            L  M       DP+ +T  AL+ A A A +++   E  K++ +   +G P     Y + 
Sbjct: 169 HLRSMGC-----DPNVVTYTALIAAFARAKKLE---EAMKLLEEMRERGCPPNLVTYNVL 220

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           ++   +      A  V   M + G  P+ +  ++L+D     G V+ A ++L     +G+
Sbjct: 221 VDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGM 280

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
              +++YS+L+     ++ + +A E+ E MK+  + P   T +ALI  LC  D++ +  +
Sbjct: 281 RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQ 340

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           +L  M   G  P+ + YS ++ A  +   +      L + ++    P++V +  +I G+C
Sbjct: 341 MLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLC 400



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 147/317 (46%), Gaps = 17/317 (5%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T++ L+  +C S K  E A +VL  ++  G+  D   Y+ LI    K+ K++   +
Sbjct: 282 PNVVTYSALIDGLCKSQKFLE-AKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQ 340

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            ++        PD VV++++I A  +SG +  A   L EM  +     PD +T   ++  
Sbjct: 341 MLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRK--SPDVVTYNTVIDG 398

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
               G++  A+ + + + +      P+V  Y+  IN   ++     A  + D M K G  
Sbjct: 399 LCKLGKIAEAQVILEQMQESG-DVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCN 457

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD V  + +ID     G++E A  +LQ  K  G +  +++Y++L+     A+   +A  +
Sbjct: 458 PDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERV 517

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--LGLCPNTITYSILLVAC 376
            E M++    P + T N ++  LC   ++ +  +++  MK       P+  TY  ++ A 
Sbjct: 518 MEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNAL 577

Query: 377 ERKDDVEVGLMLLSQAK 393
              D V+    LL Q K
Sbjct: 578 MSSDLVQEAEQLLEQMK 594


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 203/463 (43%), Gaps = 30/463 (6%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + ++N L++    +K  + A  +L  ++ AG   +    TTL+    K G++D   E
Sbjct: 176 SPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAME 235

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                       D V++  LI+    +G +DR  ++  EM  +   +  + +T   L+  
Sbjct: 236 LLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGK--GISANVVTYSCLVHG 293

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               GQ   A  V   + ++ I      YT  I+   + G    A  + + M +KG  P 
Sbjct: 294 LCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPS 353

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + L+      G V  AF+IL+    +G    +++Y++LM    +     +AL+L+ 
Sbjct: 354 NVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFN 413

Query: 321 HMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            M   +  L+P V T N LI  LC   +L K +++   M   G C N +TY++LL  C +
Sbjct: 414 SMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLK 473

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR--------YEKART--LNEHVLS 427
              ++  + L  Q  + G +PN   +  +I G C  R        + + RT  LN  +  
Sbjct: 474 AGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFD 533

Query: 428 FNSGRPQIENKWT-SLALMVYREAIVAGTIPTV----EVVSKVLGCLQLPYNADIRERLV 482
           +N+    +  + +   A  +++E   A   P +     ++   L      +  +++ ++V
Sbjct: 534 YNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMV 593

Query: 483 ENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
           E +G+  DAL  S L + +   GE D  A S LE   + G  P
Sbjct: 594 E-MGLRPDALTFSTLINRLSKLGELD-EAKSALERMVASGFTP 634



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 105/461 (22%), Positives = 198/461 (42%), Gaps = 29/461 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L + GR+ E ++LLE M++KG  D D V +    +   +   +      F  +    +S 
Sbjct: 224 LCKDGRMDEAMELLEAMKKKG-FDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISA 282

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------V 143
              T++ L+         + A  VL  + E G+  D   YT LI    K G+       +
Sbjct: 283 NVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLL 342

Query: 144 DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           + M E   +P  V +N L++   + G V  AF +L  M  +    D   +T   LMK   
Sbjct: 343 NLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADV--VTYNTLMKGLC 400

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           + G+VD A +++  +        P V+T  + I    + G    A  ++  M KKG   +
Sbjct: 401 DKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGN 460

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + L+     AGK++ A E+ ++  + G      +YS L+      +    A  L+ 
Sbjct: 461 LVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFC 520

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M++  L P +   N L+ +LC    L +   +  +M +    P+ I+++ ++    +  
Sbjct: 521 EMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAG 580

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV---------LSFN 429
           D +    L  +  E G+ P+ + F  +I   S+    ++A++  E +         L ++
Sbjct: 581 DFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYD 640

Query: 430 SGRPQIENKW-TSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
           S    + +K  T+  + +  +    GT+   ++VS +L CL
Sbjct: 641 SLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCL 681



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 177/441 (40%), Gaps = 67/441 (15%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAM-- 146
           P+  + + L+   A ++  +  F V+ LV + G   +  +   ++   C   G  +AM  
Sbjct: 107 PSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGL 166

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 ++V PD V +N LI    ++  +  A  +L EM  E     P+ +T   LM   
Sbjct: 167 IREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEM--EAAGCFPNSVTCTTLMDGL 224

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G++D A E+                                    + M KKG   D 
Sbjct: 225 CKDGRMDEAMELL-----------------------------------EAMKKKGFDADV 249

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V    LI    + G ++   E+  E   +GIS  +++YS L+        W++A  +   
Sbjct: 250 VLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNA 309

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    + P V T   LI  LC   +    M++L+ M   G  P+ +TY++LL    ++  
Sbjct: 310 MAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGL 369

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR------------RYEKARTLNEHVLSF 428
           V     +L    E G   ++V +  ++ G+C +             ++    L  +V +F
Sbjct: 370 VIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTF 429

Query: 429 NS--GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADIRE--RLVE 483
           N   G    E + T  A+ ++R+ +  G+   +   + +L GCL+     +  E  + V 
Sbjct: 430 NMLIGGLCKEGRLTK-AVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVL 488

Query: 484 NLGVSADALKRSNLCSLIDGF 504
           +LG   ++   S    LIDGF
Sbjct: 489 DLGFVPNSFTYS---ILIDGF 506



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 106/224 (47%), Gaps = 4/224 (1%)

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           Q   A  ++     +N+  +       ++  +++ ++  A SVY  MT   V+P    LS
Sbjct: 54  QFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLS 113

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKS 324
           ALI+    A K +  F ++     +G +V + I    L G C N   ++ A+ L   M  
Sbjct: 114 ALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFE-AMGLIREMGR 172

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             + P + + N LI  LC   +L + + +L +M++ G  PN++T + L+    +   ++ 
Sbjct: 173 KSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDE 232

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVL 426
            + LL   K+ G   ++V++  +I G C+    ++ + L + +L
Sbjct: 233 AMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEML 276



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 104/235 (44%), Gaps = 2/235 (0%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P   T   L+ A A +     A  VY+ +   ++  +    +  I C +     +    V
Sbjct: 72  PSWATCNFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSALIECFADAQKPQLGFGV 131

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
              + K+G   +   ++ ++      G V  A  +++E   + +S  I+SY++L+     
Sbjct: 132 VGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCK 191

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           AK  ++A+ L   M++    P   T   L+  LC   ++ + ME+L  MK  G   + + 
Sbjct: 192 AKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVL 251

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTL 421
           Y  L+       +++ G  L  +    G+  N+V + C++ G+C   ++++A T+
Sbjct: 252 YGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTV 306



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 118/283 (41%), Gaps = 22/283 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI    ++GR+++ + +   M +KG    + V +      C     IKEA   +K 
Sbjct: 428 TFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCG-NLVTYNMLLGGCLKAGKIKEAMELWKQ 486

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           V +    P   T+++L+      +    A  +   ++  GL      Y TL+ +  K G 
Sbjct: 487 VLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGS 546

Query: 143 VD---AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           ++   ++F+     N +PD + FN +I    ++G  D  F    +M      + PD +T 
Sbjct: 547 LEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAG--DFQFVKELQMKMVEMGLRPDALTF 604

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+   +  G++D A+   + +          VY   +   S  GD     ++   M  
Sbjct: 605 STLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAA 664

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQ---EAKNQGISV 294
           KG + D   +S ++    H+ +     E+L    +  ++G S+
Sbjct: 665 KGTVLDRKIVSTILTCLCHSIQEVDVMELLPTFFQGTSEGASI 707


>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 726

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/383 (21%), Positives = 163/383 (42%), Gaps = 13/383 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           R+G++ E I++ + M++ GL+     Y      +CK    +       ++  N   PTL 
Sbjct: 293 REGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLV 352

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DA 145
           +++ L+     +   E AF++ R ++E G K D  +Y+ ++  C +   +        D 
Sbjct: 353 SYSSLLHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDM 412

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           +  N  PD   + +LI A  +   +  A  V   M      V P+ +T   L+       
Sbjct: 413 VHHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDS--GVSPNVVTCTILVDGFGKER 470

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +D A      + ++ I     +Y + IN   +    +    ++ DM K+G +PD V  S
Sbjct: 471 MIDEAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYS 530

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            +ID    A K+  AF +  +  ++G    + +Y+SL+    +     + + L++HM   
Sbjct: 531 IIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWE 590

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            L P      +LI   C    +   +E+   M  LGL  +   Y+ L+    +   ++  
Sbjct: 591 GLTPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLGLSADAFLYTCLIGGFSKVLAMDGA 650

Query: 386 LMLLSQAKEDGVIPNLVMFKCII 408
             L+ +    G+ P++V +  +I
Sbjct: 651 QCLMEEMTNKGLTPSVVTYTNLI 673



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 162/381 (42%), Gaps = 29/381 (7%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + VKP+   +   +    ++  V  A++ L  +    +P +       A+++     GQV
Sbjct: 240 KGVKPNAATYGTYLYGLSRTRQVASAWNFLQMLCQRGNPCNT--YCFNAVIQGFCREGQV 297

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             A EV+  + K  +      Y+I ++   + GD      +  +M + G+ P  V  S+L
Sbjct: 298 QEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSL 357

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           +     AGKVE AFE+ +  + QG     I YS ++  C    N +   +L+  M     
Sbjct: 358 LHGLCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNF 417

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P      +LI A C    L   + V   M   G+ PN +T +IL+    ++  ++   +
Sbjct: 418 VPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFL 477

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 446
            L + ++ G++PNL M++ II G+C  +  K+    +HV             W   A M+
Sbjct: 478 FLHKVRQFGIVPNLCMYRVIINGLC--KVNKS----DHV-------------WGIFADMI 518

Query: 447 YREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 506
            R   V  T+    ++   +  L+LP    +  ++++  G   +    +   SLI+G   
Sbjct: 519 KR-GYVPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDE-GTKPNVFTYT---SLINGLCH 573

Query: 507 YD--PRAFSLLEEAASFGIVP 525
            D  P   +L +     G+ P
Sbjct: 574 DDRLPEVVTLFKHMIWEGLTP 594



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 133/316 (42%), Gaps = 30/316 (9%)

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK--VEAAFEILQEAKNQ 290
           + C  +     +A S++DDM   G  P+    S L+    H  +  +  AFE+L E + +
Sbjct: 181 LKCLVERNQIIYARSLFDDMKSSGPSPNVYSYSVLMSAYTHGDRLYLAEAFELLSEMEMK 240

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G+     +Y + +   S  +    A    + +            NA+I   C   Q+ + 
Sbjct: 241 GVKPNAATYGTYLYGLSRTRQVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQEA 300

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 409
           +EV   MK  GL P+T +YSIL+    ++ DV  G  LL +   +G+ P LV +  ++ G
Sbjct: 301 IEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHG 360

Query: 410 MCS-----------RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPT 458
           +C            RR E+    ++H++         ++    +   ++ + +    +P 
Sbjct: 361 LCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPD 420

Query: 459 VEVVSKVLGCLQLPYNADIRER-LVENLGV---SADALKRSNLCS---LIDGFGEYD--P 509
               + ++        A  R R L + LGV     D+    N+ +   L+DGFG+     
Sbjct: 421 AYNYTSLI-------YAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMID 473

Query: 510 RAFSLLEEAASFGIVP 525
            AF  L +   FGIVP
Sbjct: 474 EAFLFLHKVRQFGIVP 489



 Score = 46.6 bits (109), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 4/173 (2%)

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
           F+ +++D+ G +G+       +  +   G    +  Y++++        ++ AL  Y   
Sbjct: 108 FIRSIVDYCGSSGRELFELAPMLVSSLGGSMTLLQVYATIIRIFVELSMFEDALLTYTEA 167

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           K + ++  +   N L+  L + +Q+     +  DMKS G  PN  +YS+L+ A    D +
Sbjct: 168 KKVGVE--LQLCNFLLKCLVERNQIIYARSLFDDMKSSGPSPNVYSYSVLMSAYTHGDRL 225

Query: 383 EV--GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP 433
            +     LLS+ +  GV PN   +   +   SR  + A   N   +    G P
Sbjct: 226 YLAEAFELLSEMEMKGVKPNAATYGTYLYGLSRTRQVASAWNFLQMLCQRGNP 278


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 185/399 (46%), Gaps = 35/399 (8%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN----VCKSQKAIKE 79
           +V + L+ +++++ QG                   +D+V +    N    V +++ A++ 
Sbjct: 143 EVHKALYFHDKVVAQG-----------------FQLDQVSYGTLINGLCRVGETKAAVQL 185

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             R    +  P +  ++ ++      K    AF +   +    +  D   Y++LI+    
Sbjct: 186 LRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCV 245

Query: 140 SGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            GK+          + +N+ P+   F+ LI    + G V  A +VLA M  +   V  D 
Sbjct: 246 VGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKK--NVKLDV 303

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVY 249
           +T  +LM       QV++A+ ++ ++ +  +  TP+V  Y+I IN   +    + A  ++
Sbjct: 304 VTYNSLMDGYCLVKQVNKAKSLFNVMAQRGV--TPDVWSYSIMINGFCKIKMVDEAMKLF 361

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           ++M  K + P+ V  ++L+D    +G+   A E++ E  ++G    II+Y+S++ A    
Sbjct: 362 EEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKN 421

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
            +  KA+ L   +K   ++P + T   LI  LC   +L    +V  D+   G  PN  TY
Sbjct: 422 NHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTY 481

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + L+     K   + GL +LS+ K++G IPN + ++ +I
Sbjct: 482 TSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILI 520



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 124/272 (45%), Gaps = 4/272 (1%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P  + F  ++ +  ++     A  +  +M  E + + PD IT   LM   +  G +  + 
Sbjct: 56  PPAIEFGKILGSLLKAKQYQTALSLSQQM--EFNGIKPDFITCNLLMNCFSQLGHIKFSF 113

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            V+  I K         +TI I      G+   A   +D +  +G   D+V    LI+  
Sbjct: 114 SVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGL 173

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G+ +AA ++L+    + +   ++ YS+++ +    K    A +LY  M S ++ P V
Sbjct: 174 CRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDV 233

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T ++LI+  C   +L   +++ + M S  + PN  T+SIL+    ++  V     +L+ 
Sbjct: 234 VTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAV 293

Query: 392 AKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
             +  V  ++V +  ++ G C  ++  KA++L
Sbjct: 294 MMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSL 325



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 34/164 (20%), Positives = 67/164 (40%), Gaps = 1/164 (0%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           + K   IP  +    ++     A + + A  + Q+ +  GI    I+ + LM   S   +
Sbjct: 49  LHKNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGH 108

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            + +  ++  +      P   T   LI  LC   ++ K +     + + G   + ++Y  
Sbjct: 109 IKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGT 168

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
           L+    R  + +  + LL +     V PN+VM+  II  MC  +
Sbjct: 169 LINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDK 212


>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 913

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 174/388 (44%), Gaps = 13/388 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKSQKAIKEAF-RFFKLVPNPTLS 93
           + G +    +L+ +ME  G+      YH+    + + + +K     F R  +    P++ 
Sbjct: 394 QSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSII 453

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT--------TCAKSGKVDA 145
           ++  L+++         A  + + ++ +G+K + K Y+ LI+        T A     + 
Sbjct: 454 SYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEM 513

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           +   ++PDR ++N LI A  + G +DRA  +L +M  E   + P +     +++  A AG
Sbjct: 514 LKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKE--RMQPSNRAFRPIIEGFAVAG 571

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            + RA ++  ++ +     T   Y   I+   +    E A SV + M+  G+ P+E   +
Sbjct: 572 DMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYT 631

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            ++      G +  AFE   + K  G+ + +  Y +L+ AC  +   Q AL +   M S 
Sbjct: 632 IIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQ 691

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           K+       N LI        + +  +++  MK  G+ PN  TY+  + AC +  D++  
Sbjct: 692 KIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 751

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             ++ +  + G+ PNL  +  +I   +R
Sbjct: 752 QTVIDEMSDVGLKPNLKTYTTLIKGWAR 779



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/323 (23%), Positives = 138/323 (42%), Gaps = 10/323 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF------ 147
           T++ML+S      D   AF++   + ++GL+ D  +Y  LI    K G +D         
Sbjct: 489 TYSMLISGFIHLHDFTNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKM 548

Query: 148 --ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             E ++P    F  +I     +G + RA D+L  M        P  +T  AL+       
Sbjct: 549 QKERMQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRS--GCAPTVMTYNALIHGLIRKN 606

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           QV+RA  V   +    I      YTI +   + TGD   A   +  + + G+  D     
Sbjct: 607 QVERAVSVLNKMSIAGITPNEHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYE 666

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+     +G++++A  + +E  +Q I+     Y+ L+   +   +  +A +L + MK  
Sbjct: 667 TLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDVWEAADLMKQMKED 726

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + P + T  + I A C    + +   V+ +M  +GL PN  TY+ L+    R    +  
Sbjct: 727 GVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLPDRA 786

Query: 386 LMLLSQAKEDGVIPNLVMFKCII 408
           L    + K  G+ P+   + C++
Sbjct: 787 LKCFEEMKLAGLKPDEAAYHCLV 809



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/354 (21%), Positives = 159/354 (44%), Gaps = 13/354 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRFFKLVPN 89
           N  ++ G++++ I + ++ME  G+   +K Y    + F ++     A +      K    
Sbjct: 460 NLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNAFRIFEEMLKSGLQ 519

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P  + +N+L+       + + A ++L  +Q+  ++   + +  +I   A +G +    + 
Sbjct: 520 PDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALDI 579

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                     P  + +NALI    +   V+RA  VL +M+  +  + P+  T   +M+  
Sbjct: 580 LDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMS--IAGITPNEHTYTIIMRGY 637

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A  G + +A E +  I +  +K    +Y   +  C ++G  + A +V  +M+ + +  + 
Sbjct: 638 AATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNT 697

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LID     G V  A +++++ K  G+   I +Y+S + AC  A + Q+A  + + 
Sbjct: 698 FVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDE 757

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           M  + LKP + T   LI          + ++   +MK  GL P+   Y  L+ +
Sbjct: 758 MSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAYHCLVTS 811



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/408 (19%), Positives = 163/408 (39%), Gaps = 80/408 (19%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +P P+   F +++   A   D   A      ++  G++ +  ++T+L+   A +  +
Sbjct: 269 FERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 328

Query: 144 DAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                       E ++   V ++ LI+  G+      A ++  E  A+ +  D + I   
Sbjct: 329 RGALSCTEEMKAEGIELTIVTYSILISGFGKINDTQSADNLFKE--AKTNLGDLNGIIYS 386

Query: 196 ALMKACANAGQVDRAREV----------------YKMIHKYNIKG--------------- 224
            ++ A   +G +DRA E+                + M+H Y I                 
Sbjct: 387 NIIHAHCQSGNMDRAEELVHEMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKEC 446

Query: 225 --TPEV--YTIAINCCSQTG-----------------------------------DWEFA 245
             TP +  Y   IN   + G                                   D+  A
Sbjct: 447 CFTPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDFTNA 506

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             ++++M K G+ PD    + LI+     G ++ A  IL++ + + +     ++  ++  
Sbjct: 507 FRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEG 566

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
            + A + ++AL++ + M+     PTV T NALI  L   +Q+ + + VL+ M   G+ PN
Sbjct: 567 FAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPN 626

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             TY+I++       D+       ++ KE G+  ++ +++ ++  C +
Sbjct: 627 EHTYTIIMRGYAATGDIAKAFEYFTKIKEGGLKLDVYIYETLLRACCK 674


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 184/420 (43%), Gaps = 21/420 (5%)

Query: 25  VSEQLHSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  L++YN LI   R+G +  E + L + M+ +G    DKV +    +V    +  +EA
Sbjct: 260 VAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTP-DKVTYNALLDVFGKSRRPQEA 318

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            +  + +     +PT  T+N L+S  A     E A  +   +   G+K D   YTTL++ 
Sbjct: 319 MKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTTLLSG 378

Query: 137 CAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K+GK D   +          KP+   FNALI   G  G       V  ++  ++    
Sbjct: 379 FEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDI--KLCNCS 436

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD +T   L+      G   +   ++K + +       + +   I+  S+ G ++ A +V
Sbjct: 437 PDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAV 496

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           Y  M + GV+PD    +A++      G  E + ++L E ++       +SYSSL+ A +N
Sbjct: 497 YKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYAN 556

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            K  ++     E + S  ++     +  L+      D L +T     +++  G+ P+  T
Sbjct: 557 GKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPDITT 616

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVL 426
            + +L    RK  V     +L+   E    P+L  +  ++ M SR   ++K+  +   VL
Sbjct: 617 LNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILREVL 676



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/330 (24%), Positives = 149/330 (45%), Gaps = 13/330 (3%)

Query: 89  NPTLSTFNMLMSVCAS-SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-- 145
           NPTL T+N++++V             ++  ++  G+  D   Y TLI+ C +    +   
Sbjct: 225 NPTLITYNVVLNVYGKMGMPWSNVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAV 284

Query: 146 -MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            +F+ +K     PD+V +NAL+   G+S     A  VL EM  E +   P  +T  +L+ 
Sbjct: 285 HLFQQMKLEGFTPDKVTYNALLDVFGKSRRPQEAMKVLQEM--EANGFSPTSVTYNSLIS 342

Query: 200 ACANAGQVDRAREV-YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           A A  G ++ A ++  +M+HK  IK     YT  ++   + G  +FA  V+ +M   G  
Sbjct: 343 AYAKGGLLEEALDLKTQMVHK-GIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCK 401

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+    +ALI   G+ GK     ++  + K    S  I+++++L+          +   +
Sbjct: 402 PNICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGI 461

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++ MK         T N LI+A        + M V   M   G+ P+  TY+ +L A  R
Sbjct: 462 FKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALAR 521

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
               E    +L++ ++    PN + +  ++
Sbjct: 522 GGLWEQSEKVLAEMEDGRCKPNELSYSSLL 551



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 140/293 (47%), Gaps = 10/293 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
           +P + T+N L++V   +        + + ++ AG  A+   + TLI+  ++ G  D    
Sbjct: 436 SPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMA 495

Query: 145 ---AMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              +M E  V PD   +NA++ A  + G  +++  VLAEM  E     P+ ++  +L+ A
Sbjct: 496 VYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEM--EDGRCKPNELSYSSLLHA 553

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            AN  +++R     + I+  +++    +    +   S++         + ++ ++G+ PD
Sbjct: 554 YANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLLIETERAFLELRRRGISPD 613

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
              L+A++   G    V  A EIL        +  + +Y+SLM   S ++N+QK+ E+  
Sbjct: 614 ITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSLMYMYSRSENFQKSEEILR 673

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            +    +KP   + N +I A C   ++ +   + S+MK   L P+ +TY+  +
Sbjct: 674 EVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFI 726



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 135/331 (40%), Gaps = 17/331 (5%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFE-- 148
           +  L++  +SS     A  +   +Q+ G       Y  ++    K G     V A+ E  
Sbjct: 196 YTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSNVTALVEAM 255

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               V PD   +N LI+ C +    + A  +  +M  E     PD +T  AL+      G
Sbjct: 256 RSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLE--GFTPDKVTYNALLDVF---G 310

Query: 206 QVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           +  R +E  K++ +    G   T   Y   I+  ++ G  E A  +   M  KG+ PD  
Sbjct: 311 KSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVF 370

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L+     AGK + A ++  E +  G    I ++++L+    N   + + +++++ +
Sbjct: 371 TYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEMMKVFDDI 430

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           K     P + T N L+          +   +  +MK  G      T++ L+ A  R    
Sbjct: 431 KLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSF 490

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +  + +     E GV+P+L  +  ++   +R
Sbjct: 491 DQAMAVYKSMLEAGVVPDLSTYNAVLAALAR 521



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 111/233 (47%), Gaps = 8/233 (3%)

Query: 188 DPDHITIGA---LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWE 243
           D  HI + A   L+ A +++G+   A  ++  + +     T   Y + +N   + G  W 
Sbjct: 187 DGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWS 246

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
              ++ + M  +GV PD    + LI         E A  + Q+ K +G +   ++Y++L+
Sbjct: 247 NVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALL 306

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                ++  Q+A+++ + M++    PT  T N+LI+A   G  L + +++ + M   G+ 
Sbjct: 307 DVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIK 366

Query: 364 PNTITYSILLVACER--KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           P+  TY+ LL   E+  KDD  + + L  + +  G  PN+  F  +I M   R
Sbjct: 367 PDVFTYTTLLSGFEKAGKDDFAIQVFL--EMRAVGCKPNICTFNALIKMHGNR 417



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 145/360 (40%), Gaps = 34/360 (9%)

Query: 119 QEAGLKADCKLYTTLITTCAKSGKV-DA--MFENVK-----PDRVVFNALITACGQSGAV 170
           Q  G+  D   YT LI   + SG+  DA  +F  ++     P  + +N ++   G+ G  
Sbjct: 185 QNDGVHIDVYAYTCLINAYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMP 244

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
                 L E       V PD  T   L+  C      + A  +++ +           Y 
Sbjct: 245 WSNVTALVEA-MRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYN 303

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             ++   ++   + A  V  +M   G  P  V  ++LI      G +E A ++  +  ++
Sbjct: 304 ALLDVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHK 363

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           GI   + +Y++L+     A     A++++  M+++  KP + T NALI    +  +  + 
Sbjct: 364 GIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIKMHGNRGKFAEM 423

Query: 351 MEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           M+V  D+K     P+ +T++ LL V  +   D +V   +  + K  G +     F  +I 
Sbjct: 424 MKVFDDIKLCNCSPDIVTWNTLLAVFGQNGMDSQVS-GIFKEMKRAGFVAERDTFNTLIS 482

Query: 410 MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
             SR             SF+             A+ VY+  + AG +P +   + VL  L
Sbjct: 483 AYSR-----------CGSFDQ------------AMAVYKSMLEAGVVPDLSTYNAVLAAL 519



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/308 (18%), Positives = 128/308 (41%), Gaps = 41/308 (13%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG------KVDAMF 147
           TFN L+S  +     + A  V + + EAG+  D   Y  ++   A+ G      KV A  
Sbjct: 476 TFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALARGGLWEQSEKVLAEM 535

Query: 148 EN--VKPDRVVFNALITACGQSGAVDRAFDVLAEM---NAEVHPV--------------- 187
           E+   KP+ + +++L+ A      ++R      E+   + E H V               
Sbjct: 536 EDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAVLLKTLVLVNSKSDLL 595

Query: 188 ---------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
                           PD  T+ A++        V +A E+   +H+     +   Y   
Sbjct: 596 IETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSLTTYNSL 655

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           +   S++ +++ +  +  ++ +KG+ PD +  + +I      G+++ A  I  E K+  +
Sbjct: 656 MYMYSRSENFQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSAL 715

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
              +++Y++ +   +    + +A+++  +M     KP  +T N+++   C  DQ  +   
Sbjct: 716 VPDVVTYNTFIATYAADSMFAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEANS 775

Query: 353 VLSDMKSL 360
            + ++ +L
Sbjct: 776 FVKNLSNL 783


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 178/410 (43%), Gaps = 33/410 (8%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPNPT 91
           N ++ +  + E I+L +     GL D +   +     V      +++A + F ++   P 
Sbjct: 239 NAVLSRLPLDEAIELFQ-----GLPDKNVCSYNILLKVLCGAGRVEDARQLFDEMASPPD 293

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------- 143
           + T+ +L+    +  + E A ++L  +   G++ +  +YT+++      G+V        
Sbjct: 294 VVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVE 353

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           D +   V  D  V+  +++     G +  A     EM  +   +  D +T   L+     
Sbjct: 354 DMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRK--GLATDGVTYTTLINGLCR 411

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           AG++  A +V + +    +      YT+ ++   + G    A  V++ M ++GV P+ V 
Sbjct: 412 AGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVT 471

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +AL D     G V+AA E+L E  N+G+ +   +Y+SL+     A    +A+     M 
Sbjct: 472 YTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMD 531

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           +  LKP V T   LI ALC   +L +  ++L +M   G+ P  +TY++L+        VE
Sbjct: 532 AAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVE 591

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII-----------------GMCSRRYE 416
            G  LL    E  + PN   +  ++                 GMCSR  E
Sbjct: 592 GGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVE 641



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 151/358 (42%), Gaps = 20/358 (5%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAFRF 83
           +H Y  L   G +   + LL+DM  +G+     VY +    +C   +      + E    
Sbjct: 301 IHGYCAL---GELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVH 357

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K++ +   + +  ++S   +  D   A +    +Q  GL  D   YTTLI    ++G++
Sbjct: 358 HKVILDE--AVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGEL 415

Query: 144 --------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                   + +   +  D V +  L+    + G +  AF V   M      V P+ +T  
Sbjct: 416 KEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQR--GVAPNVVTYT 473

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           AL       G V  A E+   +    ++     Y   IN   + G  + A     DM   
Sbjct: 474 ALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAA 533

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G+ PD    + LID    +G+++ A ++LQE  + GI   I++Y+ LM     +   +  
Sbjct: 534 GLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGG 593

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            +L E M    + P  +T N+L+   C G+ +  T E+   M S  + PN  TY+IL+
Sbjct: 594 KKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILI 651



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/384 (22%), Positives = 164/384 (42%), Gaps = 17/384 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L  +GR+S+ + ++EDM    ++  + VY       C     +  A R+F  +    L+T
Sbjct: 339 LCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVS-ARRWFDEMQRKGLAT 397

Query: 95  ----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
               +  L++    + + + A +VL+ +    L  D   YT L+    K GK+   F+  
Sbjct: 398 DGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVH 457

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  V P+ V + AL     + G V  A ++L EM+ +   ++ +  T  +L+    
Sbjct: 458 NTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNK--GLELNACTYNSLINGLC 515

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AG +D+A      +    +K     YT  I+   ++G+ + A  +  +M   G+ P  V
Sbjct: 516 KAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIV 575

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L++    +G+VE   ++L+    + I     +Y+SLM       N +   E+Y+ M
Sbjct: 576 TYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGM 635

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            S  ++P  +T N LI   C    + +     ++M   G      +YS L+    +K   
Sbjct: 636 CSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKF 695

Query: 383 EVGLMLLSQAKEDGVI--PNLVMF 404
                L    +++G    P++  F
Sbjct: 696 VEARKLFHDMRKEGFTAEPDVYNF 719



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 162/364 (44%), Gaps = 17/364 (4%)

Query: 48  LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMS-VC 102
            ++M+RKGL      Y      +C++ + +KEA +  + +    L     T+ +L+   C
Sbjct: 387 FDEMQRKGLATDGVTYTTLINGLCRAGE-LKEAEKVLQEMLARRLDVDEVTYTVLVDGYC 445

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDR 154
              K +E AFQV   + + G+  +   YT L     K G V A  E         ++ + 
Sbjct: 446 KRGKMAE-AFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNA 504

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
             +N+LI    ++G +D+A   +A+M+A    + PD  T   L+ A   +G++DRA ++ 
Sbjct: 505 CTYNSLINGLCKAGYLDQAMRTMADMDAA--GLKPDVYTYTTLIDALCKSGELDRAHDLL 562

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           + +    IK T   Y + +N    +G  E    + + M +K + P+    ++L+      
Sbjct: 563 QEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIG 622

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
             +++  EI +   ++ +     +Y+ L+     A++ ++A   +  M     + T S+ 
Sbjct: 623 NNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSY 682

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           +ALI  L    +  +  ++  DM+  G       Y+  +     +D++E  L L  +  E
Sbjct: 683 SALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVE 742

Query: 395 DGVI 398
             ++
Sbjct: 743 ASIV 746



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/295 (24%), Positives = 123/295 (41%), Gaps = 17/295 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS--- 93
           ++G+++E   +   M ++G+      Y A    +CK Q  ++ A      + N  L    
Sbjct: 446 KRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCK-QGDVQAANELLHEMSNKGLELNA 504

Query: 94  -TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-------A 145
            T+N L++    +   + A + +  +  AGLK D   YTTLI    KSG++D        
Sbjct: 505 CTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQE 564

Query: 146 MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACAN 203
           M +N +KP  V +N L+     SG V+    +L  M    +HP   +  T  +LMK    
Sbjct: 565 MLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHP---NATTYNSLMKQYCI 621

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
              +    E+YK +   N++     Y I I    +    + A   +++M +KG       
Sbjct: 622 GNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASS 681

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
            SALI       K   A ++  + + +G +     Y+  +    N  N +  L L
Sbjct: 682 YSALIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYIDFNFNEDNLEATLAL 736


>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
 gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
 gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 632

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 167/394 (42%), Gaps = 21/394 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVP----N 89
           LI +G+  +  +L  +M  +G    D V Y A     CK  +    A R    +      
Sbjct: 204 LIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQ-DSAIRLLNEMKENGMQ 262

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           PT   + M++S+     +  GA  +   ++    + D   YT LI    K+G++D  +  
Sbjct: 263 PTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHF 322

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E+ KPD VV N +I   G++G +D    +  EM   V    P+ +T   ++KA 
Sbjct: 323 YHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMG--VSHCIPNVVTYNTIIKAL 380

Query: 202 ANAGQVDRAREVYKMIHKYN---IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
             +    R  EV+    +     I  +P  Y+I I+   +T   E A  + ++M +KG  
Sbjct: 381 FESKS--RVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFP 438

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P      +LID  G A + + A E+ QE K    S     Y+ ++     A     A+ L
Sbjct: 439 PCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINL 498

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++ M  +   P V   NAL++ L     L + +  +  M+  G  P+  +Y+I+L    +
Sbjct: 499 FDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAK 558

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
                  + +L+  K   + P+ V +  ++   S
Sbjct: 559 TGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALS 592



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/403 (20%), Positives = 169/403 (41%), Gaps = 57/403 (14%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIK--EAF 81
           +Y+ LI    + GR    I LL +M+  G+    K+Y    + FF +     A+   E  
Sbjct: 232 TYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEM 291

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R+  +   P + T+  L+     +   + A+     +Q    K D  +   +I    K+G
Sbjct: 292 RY--MYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAG 349

Query: 142 KVD--------------------------AMFEN------------------VKPDRVVF 157
           ++D                          A+FE+                  + P    +
Sbjct: 350 RLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTY 409

Query: 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 217
           + LI    ++  +++A  +L EM+ +  P  P      +L+ A   A + D A E+++ +
Sbjct: 410 SILIDGFCKTNRIEKAMMLLEEMDEKGFPPCP--AAYCSLIDALGKAKRYDLACELFQEL 467

Query: 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 277
            +     +  VY + I    + G  + A +++D+M+K G  P+    +AL+     A  +
Sbjct: 468 KENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACML 527

Query: 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
           + A   +++ +  G    I SY+ ++   +      +A+E+  +MK+  +KP   + N +
Sbjct: 528 DEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTV 587

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           ++AL       +  E++ +M +LG   + ITYS +L A  + D
Sbjct: 588 LSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKVD 630



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/318 (20%), Positives = 133/318 (41%), Gaps = 33/318 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + GR+ + + L E+M     +     Y+     + +S+  + E F +F+ +     
Sbjct: 343 NFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGI 402

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P+  T+++L+     +   E A  +L  + E G       Y +LI    K+ + D   E
Sbjct: 403 SPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACE 462

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
                  +F  L   CG S A  R + V+                    +K    AG++D
Sbjct: 463 -------LFQELKENCGSSSA--RVYAVM--------------------IKHLGKAGRLD 493

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A  ++  + K         Y   ++  ++    + A +    M + G +PD    + ++
Sbjct: 494 DAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIIL 553

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +     G    A E+L   KN  I    +SY++++ A S+A  +++A EL + M ++  +
Sbjct: 554 NGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFE 613

Query: 329 PTVSTMNALITALCDGDQ 346
             + T ++++ A+   DQ
Sbjct: 614 YDLITYSSILEAIGKVDQ 631



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 112/264 (42%), Gaps = 21/264 (7%)

Query: 281 FEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           ++++QE     I V   +  S ++    NAK   KA+ ++  +K+ K +PT    N++I 
Sbjct: 143 WKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMII 202

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
            L    Q  K  E+ ++M + G C P+T+TYS L+ A  +    +  + LL++ KE+G+ 
Sbjct: 203 MLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQ 262

Query: 399 PNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSL------------AL 444
           P   ++  II +  +      A +L E  + +   RP +   +T L            A 
Sbjct: 263 PTAKIYTMIISLFFKLDNVHGALSLFEE-MRYMYCRPDVFT-YTELIRGLGKAGRIDEAY 320

Query: 445 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
             Y E       P   V++ ++  L      D   +L E +GVS          ++I   
Sbjct: 321 HFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKAL 380

Query: 505 GEYDPR---AFSLLEEAASFGIVP 525
            E   R    FS  E     GI P
Sbjct: 381 FESKSRVSEVFSWFERMKGSGISP 404



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 150/379 (39%), Gaps = 45/379 (11%)

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
           AE   EV  +  DH  +  +MK   + G   + +       K N +     Y   I+C  
Sbjct: 77  AERALEVLMLRVDHWLVREVMKT--DVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLE 134

Query: 238 QTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
               +     +  +M +     V P E  LS +I   G+A  +  A  I  + K +    
Sbjct: 135 LVEQYGEMWKMIQEMVRSPICVVTPME--LSQVIRMLGNAKMIGKAITIFYQIKARKCQP 192

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEV 353
              +Y+S++    +   ++K  ELY  M +     P   T +ALI+A C   +    + +
Sbjct: 193 TAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRL 252

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           L++MK  G+ P    Y++++    + D+V   L L  + +     P++  +  +I    R
Sbjct: 253 LNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELI----R 308

Query: 414 RYEKARTLNE-----HVLSFNSGRPQ--IENKWTSL---------ALMVYREAIVAGTIP 457
              KA  ++E     H +     +P   + N   +           L ++ E  V+  IP
Sbjct: 309 GLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIP 368

Query: 458 TVEVVSKVLGCLQLPYNADIR--------ERLVENLGVSADALKRSNLCSLIDGFGEYD- 508
            V   + ++  L   + +  R        ER+ +  G+S      S    LIDGF + + 
Sbjct: 369 NVVTYNTIIKAL---FESKSRVSEVFSWFERM-KGSGISPSPFTYS---ILIDGFCKTNR 421

Query: 509 -PRAFSLLEEAASFGIVPC 526
             +A  LLEE    G  PC
Sbjct: 422 IEKAMMLLEEMDEKGFPPC 440


>gi|440794290|gb|ELR15456.1| pentatricopeptide repeat domain/PPR repeatcontaining protein,
           partial [Acanthamoeba castellanii str. Neff]
          Length = 551

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 3/235 (1%)

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D      L+K  A  G   R   + + +    IK T   YT  +  C +   W  A  V 
Sbjct: 62  DVAIFSTLIKIFAAGGDWARCEALMQHMRDEKIKPTVVTYTNLLKYCERVESWHKAAEVL 121

Query: 250 DDMTKK--GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           + M  +  G+ PD VF +A+++       +  A  +L E +N+G+   I +Y+SL+  C 
Sbjct: 122 EQMKAEAPGLKPDVVFYTAMVNVCCKRNDLTQALRVLAEMRNEGVKPNIFTYASLVNICE 181

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNT 366
             KN +KAL+L E MK   ++P V    +LI        L   M++  DM  L  + PNT
Sbjct: 182 REKNLKKALDLLEEMKDENIQPNVYIYTSLINVCEKKRDLVTAMKLFDDMTRLYRIRPNT 241

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
            T++ LL  C  K D++ G+ +L+  ++  V+PN   F  +  +C++    A+ L
Sbjct: 242 FTFNSLLNVCVEKRDLDRGMEVLALMRQHQVVPNTSTFNSLASLCAKTGNAAKGL 296



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 166/388 (42%), Gaps = 16/388 (4%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D  +F+ LI      G   R   ++  M  E   + P  +T   L+K C       +A E
Sbjct: 62  DVAIFSTLIKIFAAGGDWARCEALMQHMRDE--KIKPTVVTYTNLLKYCERVESWHKAAE 119

Query: 213 VYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           V + +        P+V  YT  +N C +  D   A  V  +M  +GV P+    ++L++ 
Sbjct: 120 VLEQMKAEAPGLKPDVVFYTAMVNVCCKRNDLTQALRVLAEMRNEGVKPNIFTYASLVNI 179

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKP 329
                 ++ A ++L+E K++ I   +  Y+SL+  C   ++   A++L++ M  + +++P
Sbjct: 180 CEREKNLKKALDLLEEMKDENIQPNVYIYTSLINVCEKKRDLVTAMKLFDDMTRLYRIRP 239

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
              T N+L+    +   L + MEVL+ M+   + PNT T++ L   C +  +   GL LL
Sbjct: 240 NTFTFNSLLNVCVEKRDLDRGMEVLALMRQHQVVPNTSTFNSLASLCAKTGNAAKGLELL 299

Query: 390 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF------NSGRPQIENKWTSLA 443
           +  K  GV P+ + F  +I  C  R  +     +   S       ++  P +E   + L 
Sbjct: 300 ATMKTTGVSPDNLTFTSLIAACRARDTEGNDAADTADSTAAQARESTASPPLEQALSLLD 359

Query: 444 LMVYREAIVAGTIPTVEVVSKVLGCLQLPYN----ADIRERLVENLGVSADALKRSNLCS 499
            M     +    I  + ++S  L   +L Y        +  L  N  +  D      L +
Sbjct: 360 RMQREFNVAPDNITLITLMSVCLRSRRLGYALRAYGQAKAELARNRALQLDKENYYELVN 419

Query: 500 LIDGFGEYDPRAFSLLEEAASFGIVPCV 527
           L    G++  R   ++ +  + G+ P V
Sbjct: 420 LCAKNGQW-RRGLEIVSDMENAGLTPSV 446



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 152/358 (42%), Gaps = 46/358 (12%)

Query: 46  DLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMS 100
           ++LE M+ +   L  D V++    NVC  +  + +A R    + N    P + T+  L++
Sbjct: 119 EVLEQMKAEAPGLKPDVVFYTAMVNVCCKRNDLTQALRVLAEMRNEGVKPNIFTYASLVN 178

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAM--FEN------VK 151
           +C   K+ + A  +L  +++  ++ +  +YT+LI  C K    V AM  F++      ++
Sbjct: 179 ICEREKNLKKALDLLEEMKDENIQPNVYIYTSLINVCEKKRDLVTAMKLFDDMTRLYRIR 238

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P+   FN+L+  C +   +DR  +VLA M    H V P+  T  +L   CA  G   +  
Sbjct: 239 PNTFTFNSLLNVCVEKRDLDRGMEVLALMRQ--HQVVPNTSTFNSLASLCAKTGNAAKGL 296

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCC------------------------SQTGDWEFACS 247
           E+   +    +      +T  I  C                        + +   E A S
Sbjct: 297 ELLATMKTTGVSPDNLTFTSLIAACRARDTEGNDAADTADSTAAQARESTASPPLEQALS 356

Query: 248 VYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK-----NQGISVGIISYSS 301
           + D M ++  V PD + L  L+     + ++  A     +AK     N+ + +   +Y  
Sbjct: 357 LLDRMQREFNVAPDNITLITLMSVCLRSRRLGYALRAYGQAKAELARNRALQLDKENYYE 416

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           L+  C+    W++ LE+   M++  L P+V   N+ +        L    EV+  M+S
Sbjct: 417 LVNLCAKNGQWRRGLEIVSDMENAGLTPSVRIYNSFLRNFDPTQDLEDAKEVVRLMRS 474



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 119/277 (42%), Gaps = 45/277 (16%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-----PT 91
           R+  + + +DLLE+M+ + +     +Y +   NVC+ ++ +  A + F  +       P 
Sbjct: 182 REKNLKKALDLLEEMKDENIQPNVYIYTS-LINVCEKKRDLVTAMKLFDDMTRLYRIRPN 240

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
             TFN L++VC   +D +   +VL L+++  +  +   + +L + CAK+G      E   
Sbjct: 241 TFTFNSLLNVCVEKRDLDRGMEVLALMRQHQVVPNTSTFNSLASLCAKTGNAAKGLELLA 300

Query: 149 -----NVKPDRVVFNALITAC------------------------GQSGAVDRAFDVLAE 179
                 V PD + F +LI AC                          S  +++A  +L  
Sbjct: 301 TMKTTGVSPDNLTFTSLIAACRARDTEGNDAADTADSTAAQARESTASPPLEQALSLLDR 360

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-----KMIHKYNIKGTPEVYTIAIN 234
           M  E + V PD+IT+  LM  C  + ++  A   Y     ++     ++   E Y   +N
Sbjct: 361 MQREFN-VAPDNITLITLMSVCLRSRRLGYALRAYGQAKAELARNRALQLDKENYYELVN 419

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDF 270
            C++ G W     +  DM   G+ P   ++ S L +F
Sbjct: 420 LCAKNGQWRRGLEIVSDMENAGLTPSVRIYNSFLRNF 456


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 178/384 (46%), Gaps = 35/384 (9%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFN-VCKS--QKAIKEAFRFFK-LVPNPTLSTF 95
           ++ E +   +D+  KG   +++V +    + +CK+   +A  +  R    L+  P +  +
Sbjct: 64  KVKETLHFHDDVIAKGF-QLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMY 122

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMF 147
           + ++      K    AF +   +    +  D   Y TL+  C   G++          + 
Sbjct: 123 STIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLL 182

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           +N+KPD   FN L+    + G + +A +VLA M  +   VDPD IT  +LM       Q 
Sbjct: 183 KNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQ--SVDPDVITYNSLMDGYFLVKQE 240

Query: 208 DRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++A  V+  + +  +  TP+V  Y++ IN   +T   + A ++  +M  K + P+ V  S
Sbjct: 241 NKATFVFNTMARRGV--TPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYS 298

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           +LID    +G++  A++++ E  N+G    +I+Y+SL+ A        KA+ L   +K  
Sbjct: 299 SLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQ 358

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EV 384
            ++P + T   L+  LC   +L    EV               Y ILL+     D + + 
Sbjct: 359 GIQPDIYTYTILVDGLCKNGRLKDAQEV---------------YQILLIKGYHLDSLFDK 403

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII 408
            L LLS+ +++G  PN V F+ +I
Sbjct: 404 ALSLLSKMEDNGCTPNPVTFEILI 427



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 142/343 (41%), Gaps = 48/343 (13%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           N  ++ F  L  VC + K  E        V   G + +   Y TLI    K+G+  A  +
Sbjct: 47  NILVNCFCHLGQVCLNDKVKE-TLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQ 105

Query: 149 N--------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    V+P+ V+++ +I +  +   V  AFD+ ++M   +  + PD IT   LM  
Sbjct: 106 VLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQM--LLKRISPDVITYNTLMYG 163

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           C   G   R +E                                A  +++ M  K + PD
Sbjct: 164 CLIVG---RLKE--------------------------------AVGLFNQMLLKNIKPD 188

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + L+D     G+++ A  +L     Q +   +I+Y+SLM      K   KA  ++ 
Sbjct: 189 IYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFN 248

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    + P V + + +I  LC    + + + +L +M S  + PNT+TYS L+    +  
Sbjct: 249 TMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSG 308

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
            +     L+++    G   +++ +  ++  +C + + +KA TL
Sbjct: 309 RIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITL 351



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/285 (21%), Positives = 118/285 (41%), Gaps = 26/285 (9%)

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG------KVEAAFEILQEAKNQGISVG 295
           +    S+   M  +G+  D V L+ L++   H G      KV+       +   +G  + 
Sbjct: 24  FHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDKVKETLHFHDDVIAKGFQLN 83

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
            +SY +L+     A   + A+++  ++  + ++P V   + +I +LC    +    ++ S
Sbjct: 84  QVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYS 143

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR- 413
            M    + P+ ITY+ L+  C     ++  + L +Q     + P++  F  ++ G+C   
Sbjct: 144 QMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEG 203

Query: 414 RYEKAR---------TLNEHVLSFNSGRP-----QIENKWTSLALMVYREAIVAGTIPTV 459
             +KAR         +++  V+++NS        + ENK T     V+      G  P V
Sbjct: 204 EMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKAT----FVFNTMARRGVTPDV 259

Query: 460 EVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
              S ++  L      D    L++ +   + A       SLIDG 
Sbjct: 260 HSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGL 304


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 177/404 (43%), Gaps = 19/404 (4%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF--RFF 84
           +N+L+    +  +    I L E M+R  ++     Y+      C+ SQ ++  A   +  
Sbjct: 88  FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMM 147

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-- 142
           KL   P++ T + L++     K    A  ++  + E G + D   +TTLI       K  
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 207

Query: 143 -----VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                VD M +   +P+ V +  ++    + G  D A ++L +M  E   ++ D +    
Sbjct: 208 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM--EAAKIEADVVIFNT 265

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ +      VD A  ++K +    I+     Y+  I+C    G W  A  +  DM +K 
Sbjct: 266 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 325

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + P+ V  +ALID     GK   A ++  +   + I   I +Y+SL+          KA 
Sbjct: 326 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAK 385

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +++E M S    P V T N LI   C   ++    E+  +M   GL  +T+TY+ L+   
Sbjct: 386 QMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 445

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 418
               D +    +  Q   DGV P+++ +  ++ G+C+  + EKA
Sbjct: 446 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKA 489



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 158/333 (47%), Gaps = 12/333 (3%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--------VDAM 146
           FN ++      +  + A  + + ++  G++ +   Y++LI+     G+         D +
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
            + + P+ V FNALI A  + G    A  +  +M      +DPD  T  +L+       +
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDR 380

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           +D+A+++++ +   +       Y   I    ++   E    ++ +M+ +G++ D V  + 
Sbjct: 381 LDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 440

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 325
           LI    H G  + A ++ ++  + G+   I++YS L+ G C+N K  +KALE++++M+  
Sbjct: 441 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKS 499

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           ++K  +     +I  +C   ++    ++   +   G+ PN +TY+ ++     K  ++  
Sbjct: 500 EIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEA 559

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
             LL + KEDG +PN   +  +I    R  +KA
Sbjct: 560 YALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKA 592



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 156/361 (43%), Gaps = 15/361 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G     ++LL  ME   +     +++    ++CK  + + +A   FK +     
Sbjct: 233 NGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK-YRHVDDALNLFKEMETKGI 291

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P + T++ L+S   S      A Q+L  + E  +  +   +  LI    K GK      
Sbjct: 292 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 351

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              D +  ++ PD   +N+L+        +D+A  +   M ++     PD +T   L+K 
Sbjct: 352 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK--DCFPDVVTYNTLIKG 409

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              + +V+   E+++ +    + G    YT  I      GD + A  V+  M   GV PD
Sbjct: 410 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 469

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  S L+D   + GK+E A E+    +   I + I  Y++++     A       +L+ 
Sbjct: 470 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 529

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            +    +KP V T N +I+ LC    L +   +L  MK  G  PN+ TY+ L+ A  R  
Sbjct: 530 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDG 589

Query: 381 D 381
           D
Sbjct: 590 D 590



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 149/339 (43%), Gaps = 15/339 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           + L +   + + ++L ++ME KG+      Y +    +C   +    +     ++    N
Sbjct: 268 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 327

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P L TFN L+           A ++   + +  +  D   Y +L+       ++D    M
Sbjct: 328 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 387

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE     +  PD V +N LI    +S  V+   ++  EM+     +  D +T   L++  
Sbjct: 388 FEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHR--GLVGDTVTYTTLIQGL 445

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            + G  D A++V+K +    +      Y+I ++     G  E A  V+D M K  +  D 
Sbjct: 446 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 505

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + +I+    AGKV+  +++      +G+   +++Y++++    + +  Q+A  L + 
Sbjct: 506 YIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 565

Query: 322 MKSIKLKPTVSTMNALITA-LCDGDQLPKTMEVLSDMKS 359
           MK     P   T N LI A L DGD+   + E++ +M+S
Sbjct: 566 MKEDGPLPNSGTYNTLIRAHLRDGDK-AASAELIREMRS 603



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 140/337 (41%), Gaps = 23/337 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L   GR S+   LL DM  K +      ++A      K  K + EA + +    K   +P
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFV-EAEKLYDDMIKRSIDP 363

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
            + T+N L++        + A Q+   +       D   Y TLI    KS +V+   E  
Sbjct: 364 DIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELF 423

Query: 151 KP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +         D V +  LI      G  D A  V  +M ++  P  PD +T   L+    
Sbjct: 424 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP--PDIMTYSILLDGLC 481

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD----WEFACSVYDDMTKKGVI 258
           N G++++A EV+  + K  IK    +YT  I    + G     W+  CS    ++ KGV 
Sbjct: 482 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS----LSLKGVK 537

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+ V  + +I        ++ A+ +L++ K  G      +Y++L+ A     +   + EL
Sbjct: 538 PNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAEL 597

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
              M+S +     ST+  +   L DG      +++LS
Sbjct: 598 IREMRSCRFVGDASTIGLVANMLHDGRLDKSFLDMLS 634



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/283 (20%), Positives = 118/283 (41%), Gaps = 37/283 (13%)

Query: 223 KGTPEVYTIAINCC----------SQTGDW-------------EFACSVYDDMTKKGVIP 259
           KG P +   +I+ C          S +GD+             + A  ++  M K   +P
Sbjct: 24  KGNPRIAPSSIDLCGMCYWGRAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLP 83

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
             V  + L+       K +    + ++ +   I  G+ +Y+ L+           AL L 
Sbjct: 84  SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 143

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M  +  +P++ T+++L+   C G ++   + ++  M  +G  P+TIT++ L+      
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-----------RYEKARTLNEHVLS 427
           +     + L+ +  + G  PNLV +  ++ G+C R           + E A+ +   V+ 
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK-IEADVVI 262

Query: 428 FNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
           FN+    + + +    AL +++E    G  P V   S ++ CL
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 305



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/253 (19%), Positives = 109/253 (43%), Gaps = 11/253 (4%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P  +    L+ A A   + D    + + + +  I      Y I INC  +      A ++
Sbjct: 83  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
              M K G  P  V LS+L++   H  ++  A  ++ +    G     I++++L+     
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                +A+ L + M     +P + T   ++  LC        + +L+ M++  +  + + 
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKA-------- 418
           ++ ++ +  +   V+  L L  + +  G+ PN+V +  +I  +CS  R+  A        
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 419 -RTLNEHVLSFNS 430
            + +N ++++FN+
Sbjct: 323 EKKINPNLVTFNA 335


>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
          Length = 632

 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 166/394 (42%), Gaps = 21/394 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVP----N 89
           LI +G+  +  +L  +M  +G    D V Y A     CK  +    A R    +      
Sbjct: 204 LIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQ-DSAIRLLNEMKENGMQ 262

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           PT   + M++S+     +  GA  +   ++    + D   YT LI    K+G++D  +  
Sbjct: 263 PTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLGKAGRIDEAYHF 322

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E  KPD VV N +I   G++G +D    +  EM   V    P+ +T   ++KA 
Sbjct: 323 YHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMG--VSHCIPNVVTYNTIIKAL 380

Query: 202 ANAGQVDRAREVYKMIHKYN---IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
             +    R  EV+    +     I  +P  Y+I I+   +T   E A  + ++M +KG  
Sbjct: 381 FESK--SRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEKAMMLLEEMDEKGFP 438

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P      +LID  G A + + A E+ QE K    S     Y+ ++     A     A+ L
Sbjct: 439 PCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINL 498

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++ M  +   P V   NAL++ L     L + +  +  M+  G  P+  +Y+I+L    +
Sbjct: 499 FDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAK 558

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
                  + +L+  K   + P+ V +  ++   S
Sbjct: 559 TGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALS 592



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/403 (21%), Positives = 170/403 (42%), Gaps = 57/403 (14%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIK--EAF 81
           +Y+ LI    + GR    I LL +M+  G+    K+Y    + FF +     A+   E  
Sbjct: 232 TYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEM 291

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R+  +   P + T+  L+     +   + A+     +Q  G K D  +   +I    K+G
Sbjct: 292 RY--MYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAG 349

Query: 142 KVD--------------------------AMFEN------------------VKPDRVVF 157
           ++D                          A+FE+                  + P    +
Sbjct: 350 RLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTY 409

Query: 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 217
           + LI    ++  +++A  +L EM+ +  P  P      +L+ A   A + D A E+++ +
Sbjct: 410 SILIDGFCKTNRIEKAMMLLEEMDEKGFPPCP--AAYCSLIDALGKAKRYDLACELFQEL 467

Query: 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 277
            +     +  VY + I    + G  + A +++D+M+K G  P+    +AL+     A  +
Sbjct: 468 KENCGSSSARVYAVMIKHLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMSGLARACML 527

Query: 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
           + A   +++ +  G    I SY+ ++   +      +A+E+  +MK+  +KP   + N +
Sbjct: 528 DEALTTMRKMQEHGCLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTV 587

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           ++AL       +  E++ +M +LG   + ITYS +L A  + D
Sbjct: 588 LSALSHAGMFEEAAELMKEMNALGFEYDLITYSSILEAIGKVD 630



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 113/264 (42%), Gaps = 21/264 (7%)

Query: 281 FEILQEAKNQGISVGI-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           ++++QE     I V   +  S ++    NAK   KA+ ++  +K+ K +PT    N++I 
Sbjct: 143 WKMIQEMVRSPICVVTPMELSQVIRMLGNAKMIGKAITIFYQIKARKCQPTAQAYNSMII 202

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
            L    Q  K  E+ ++M + G C P+T+TYS L+ A  +    +  + LL++ KE+G+ 
Sbjct: 203 MLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQ 262

Query: 399 PNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSL------------AL 444
           P   ++  II +  +      A +L E  + +   RP +   +T L            A 
Sbjct: 263 PTAKIYTMIISLFFKLDNVHGALSLFEE-MRYMYCRPDVFT-YTELIRGLGKAGRIDEAY 320

Query: 445 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
             Y E    G  P   V++ ++  L      D   +L E +GVS          ++I   
Sbjct: 321 HFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKAL 380

Query: 505 GEYDPR---AFSLLEEAASFGIVP 525
            E   R    FS  E     GI P
Sbjct: 381 FESKSRVSEVFSWFERMKGSGISP 404



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 151/379 (39%), Gaps = 45/379 (11%)

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
           AE   EV  +  DH  +  +MK   + G   + +       K N +     Y   I+C  
Sbjct: 77  AERALEVLMLRVDHWLVREVMKT--DVGVNVKMQFFRWAAKKRNYQHDTSTYMALIHCLE 134

Query: 238 QTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
               +     +  +M +     V P E  LS +I   G+A  +  A  I  + K +    
Sbjct: 135 LVEQYGEMWKMIQEMVRSPICVVTPME--LSQVIRMLGNAKMIGKAITIFYQIKARKCQP 192

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEV 353
              +Y+S++    +   ++K  ELY  M +    +P   T +ALI+A C   +    + +
Sbjct: 193 TAQAYNSMIIMLIHEGQYEKVHELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRL 252

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           L++MK  G+ P    Y++++    + D+V   L L  + +     P++  +  +I    R
Sbjct: 253 LNEMKENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELI----R 308

Query: 414 RYEKARTLNE-----HVLSFNSGRPQ--IENKWTSL---------ALMVYREAIVAGTIP 457
              KA  ++E     H +     +P   + N   +           L ++ E  V+  IP
Sbjct: 309 GLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIP 368

Query: 458 TVEVVSKVLGCLQLPYNADIR--------ERLVENLGVSADALKRSNLCSLIDGFGEYD- 508
            V   + ++  L   + +  R        ER+ +  G+S      S    LIDGF + + 
Sbjct: 369 NVVTYNTIIKAL---FESKSRVSEVFSWFERM-KGSGISPSPFTYS---ILIDGFCKTNR 421

Query: 509 -PRAFSLLEEAASFGIVPC 526
             +A  LLEE    G  PC
Sbjct: 422 IEKAMMLLEEMDEKGFPPC 440


>gi|449448705|ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/418 (23%), Positives = 176/418 (42%), Gaps = 66/418 (15%)

Query: 70  VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
           +C   +  K A R+  ++P+  +  F   ++     +D + A+      +     ++  +
Sbjct: 205 LCVDYRNPKMAIRYASILPHADI-LFCTTINEFGKKRDLKSAYIAYTESKANMNGSNMYI 263

Query: 130 YTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y T+I  C   G          D + +NV P+  VFN+L+       A D  +      N
Sbjct: 264 YRTIIDVCGLCGDYKKSRNIYQDLVNQNVIPNIFVFNSLMNV----NAHDLNYTFQLYKN 319

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV----YTIAINCCS 237
            +   V  D  +   L+KAC  AG+VD A+++Y+ +      G  ++    Y+  +   +
Sbjct: 320 MQNLGVPADMASYNILLKACCLAGRVDLAQDIYREVKHLETTGVLKLDVFTYSTIVKVFA 379

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
               W+ A  V +DM   GV P+ V  S+LI    ++G VE A ++ +E  + G      
Sbjct: 380 DAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCANSGLVELAIQLFEEMVSAGCEPNTQ 439

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKL------------------------------ 327
             ++L+ AC   + + +A  L+   K  +L                              
Sbjct: 440 CCNTLLHACVEGRQFDRAFRLFRSWKEKELWDGIERKSSTDNNLDADSTSQLCNTKMPNA 499

Query: 328 ---------------KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
                          KPT++T N L+ A   G        ++ +MKS+GL PN I++SIL
Sbjct: 500 PSHVHQISFVGNFAFKPTITTYNILMKAC--GTDYYHAKALMEEMKSVGLTPNHISWSIL 557

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLSF 428
           +  C R  DVE  + +L+  +  GV P++V +   I +C   + ++ A +L E +  F
Sbjct: 558 VDICGRSHDVESAVQILTTMRMAGVDPDVVAYTTAIKVCVEGKNWKLAFSLFEEMKRF 615



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 138/292 (47%), Gaps = 23/292 (7%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENV 150
           T++ ++ V A +K  + A +V   +Q AG+  +   +++LI++CA SG V+    +FE +
Sbjct: 370 TYSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCANSGLVELAIQLFEEM 429

Query: 151 -----KPDRVVFNALITACGQSGAVDRAFDVLAEMNA-------EVHPVDPDHITIGALM 198
                +P+    N L+ AC +    DRAF +             E      +++   +  
Sbjct: 430 VSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSWKEKELWDGIERKSSTDNNLDADSTS 489

Query: 199 KACANAGQVDRAREVYKM--IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           + C N    +    V+++  +  +  K T   Y I +  C    D+  A ++ ++M   G
Sbjct: 490 QLC-NTKMPNAPSHVHQISFVGNFAFKPTITTYNILMKACGT--DYYHAKALMEEMKSVG 546

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + P+ +  S L+D  G +  VE+A +IL   +  G+   +++Y++ +  C   KNW+ A 
Sbjct: 547 LTPNHISWSILVDICGRSHDVESAVQILTTMRMAGVDPDVVAYTTAIKVCVEGKNWKLAF 606

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS---DMKSLGLCPN 365
            L+E MK  +++P + T + L+ A      L +  + L+   DM+  G   N
Sbjct: 607 SLFEEMKRFEIQPNLVTYSTLLRARSTYGSLHEVQQCLAIYQDMRKSGFKSN 658


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/392 (22%), Positives = 174/392 (44%), Gaps = 17/392 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVY----HARFFNVCKSQKAIKEAFRFFKLVPNP 90
           L   GRI E I L + M         + Y    HA F N  ++ + +       +    P
Sbjct: 294 LCEAGRIDEGISLFKKMREDDCYPTVRTYTVIIHALFGND-RNLEGMDLFNEMRERSCEP 352

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            + T+ +++      +  + + ++L  + E GL      Y  LI    + G+++A  E  
Sbjct: 353 NVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEIL 412

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                 N +P+   +N LI    +   V +A  +L++M      + P  +T  +L+    
Sbjct: 413 GLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLES--KLTPSLVTYNSLIHVQC 470

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AG  D A ++  ++ +  +      Y++ I+   ++   E AC +++ + +KG+  +EV
Sbjct: 471 KAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEV 530

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEH 321
             +ALID    AGK++ A  +L+   ++       +Y+SL+ G C   K  Q+ L + E+
Sbjct: 531 MYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGK-VQEGLSMVEN 589

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M  + +KPTV+T   LI  +           V + M S G  P+  TY+  +       +
Sbjct: 590 MSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGN 649

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           V+    ++++  E GV+P+ + +  +I    R
Sbjct: 650 VKEAEGMMARMIEAGVMPDSLTYTLLISAYER 681



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 189/413 (45%), Gaps = 21/413 (5%)

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           ARF  + + ++   E      +VPN  + T N +++  +   +   A   +  + +AGL 
Sbjct: 190 ARFLMIDEMKRVYTEMLNDM-IVPN--IYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLS 246

Query: 125 ADCKLYTTLITTCAKSGKVDAMFE--NVKPDR------VVFNALITACGQSGAVDRAFDV 176
            D   YT+LI    ++  V++ ++  N+ P++      V +  +I    ++G +D    +
Sbjct: 247 PDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISL 306

Query: 177 LAEMNA-EVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
             +M   + +P V    + I AL     N   +D   E+ +   + N+      YT+ ++
Sbjct: 307 FKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNV----HTYTVMVD 362

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
              +    + +  + ++M +KG++P  V  +ALI      G++EAA EIL   ++     
Sbjct: 363 AMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRP 422

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
              +Y+ L+   S  K+  KA+ L   M   KL P++ T N+LI   C         ++L
Sbjct: 423 NERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLL 482

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-S 412
             +K  GL P+  TYS+ +    +   +E    L +  KE G+  N VM+  +I G C +
Sbjct: 483 DLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKA 542

Query: 413 RRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 465
            + ++A +L E + S     P   + + SL   V +E  V   +  VE +SK+
Sbjct: 543 GKIDEAISLLERMHS-EDCLPN-SSTYNSLIYGVCKEGKVQEGLSMVENMSKM 593



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 144/323 (44%), Gaps = 17/323 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LIR    +GRI   +++L  ME       ++ Y+       K +   K      K+
Sbjct: 391 TYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKM 450

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + +   P+L T+N L+ V   +   + A+++L L++E GL  D   Y+  I T  KS ++
Sbjct: 451 LESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRM 510

Query: 144 DA---MFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +    +F +     +K + V++ ALI    ++G +D A  +L  M++E     P+  T  
Sbjct: 511 EEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSE--DCLPNSSTYN 568

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+      G+V     + + + K  +K T   YTI I    + GD++ A  V++ M   
Sbjct: 569 SLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSF 628

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  PD    +A I     +G V+ A  ++      G+    ++Y+ L+ A         A
Sbjct: 629 GHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDA 688

Query: 316 LELYEHMKSIKLKPTVSTMNALI 338
             + + M      P+    N LI
Sbjct: 689 FNVLKRMLDAGCDPSHPIWNNLI 711



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/267 (20%), Positives = 117/267 (43%), Gaps = 4/267 (1%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +N L+    +   +D    V  EM  ++  + P+  T+  ++ A +  G +  A      
Sbjct: 182 YNELLMMLARFLMIDEMKRVYTEMLNDM--IVPNIYTLNTMVNAYSKMGNIVEANLYVSK 239

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           I +  +      YT  I    +  D   A  V++ M  KG   +EV  + +I     AG+
Sbjct: 240 IFQAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGR 299

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           ++    + ++ +       + +Y+ ++ A        + ++L+  M+    +P V T   
Sbjct: 300 IDEGISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTV 359

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           ++ A+C   +L ++  +L++M   GL P+ +TY+ L+     +  +E  L +L   + + 
Sbjct: 360 MVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNN 419

Query: 397 VIPNLVMF-KCIIGMCSRRY-EKARTL 421
             PN   + + I G   R++  KA TL
Sbjct: 420 CRPNERTYNELICGFSKRKHVHKAMTL 446


>gi|115475728|ref|NP_001061460.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|38175588|dbj|BAD01297.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|38175668|dbj|BAD01373.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113623429|dbj|BAF23374.1| Os08g0290000 [Oryza sativa Japonica Group]
 gi|125602875|gb|EAZ42200.1| hypothetical protein OsJ_26764 [Oryza sativa Japonica Group]
          Length = 806

 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 151/360 (41%), Gaps = 13/360 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPT 91
           L R  R+   + +  +M  +G+   D +  A    +CK    Q+A+   F+         
Sbjct: 407 LQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVN 466

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------- 143
           L+T N L+      K  + A +V++ +   G++ D   Y  +I  C K  K+        
Sbjct: 467 LATSNALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHG 526

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           D      KPD   FN L+ A    G ++  F +L +M  E   + PD ++ G ++     
Sbjct: 527 DMTRRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTE--GLQPDIVSYGTIIDGHCK 584

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           A  + +A+E    +    +K    +Y   I    + GD   A    + M   G+ P  V 
Sbjct: 585 AKDIRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVT 644

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
             +L+ +  HAG VE A  I  +A+   + +G+I Y+ ++          +A+  +E M+
Sbjct: 645 YGSLMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMR 704

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           S  + P   T   L+ A        +  ++  +M   G+ P+ ITY  L+  C   + ++
Sbjct: 705 SRGISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLD 764



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 186/458 (40%), Gaps = 44/458 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L R  R  E   +L++ME+ G+   + +Y+      C+ +    +A R F  +     
Sbjct: 299 NGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCR-KGHCSQALRLFDEMVLKKM 357

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-----V 143
            PT  T+N++        + E A ++L  +   G+   C L+ T++    +  +     V
Sbjct: 358 KPTAVTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVV 417

Query: 144 DAMFENVKPDRVVFNALITAC--------GQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
               E V       + L+TAC            AV   F  L +       +  +  T  
Sbjct: 418 SITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFKTLNK------GLGVNLATSN 471

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           AL+        +  A +V + +    I+     Y I I  C +    E A  ++ DMT++
Sbjct: 472 ALIHGLCEGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRR 531

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  PD    + L+    + GK+E  F +L + K +G+   I+SY +++     AK+ +KA
Sbjct: 532 GFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKA 591

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            E    +    LKP V   NALI        +   ++ +  MKS G+ P  +TY  L+  
Sbjct: 592 KEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYW 651

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ- 434
                 VE    + SQA+E+ V   ++ +  +I    + Y K   + E V  F   R + 
Sbjct: 652 MCHAGLVEEAKTIFSQARENNVDLGVIGYTIMI----QGYCKLGKMVEAVAYFEEMRSRG 707

Query: 435 -IENKWTSLALM--------------VYREAIVAGTIP 457
              NK T   LM              ++ E + +G IP
Sbjct: 708 ISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIP 745



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 88/428 (20%), Positives = 187/428 (43%), Gaps = 52/428 (12%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFR----FFKLVPN 89
           L+R G++    ++ ++M E + +   +  Y A    +CK+ K +   F      ++    
Sbjct: 195 LVRAGQLDAAREVFDEMRESRNVALNEYSYTAMIKALCKAGK-VDAGFEMLAELWRAGLQ 253

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---GKVDAM 146
           PT+ T+N+LM     S   E AF++   +++ G+      +  LI   A+    G+V  +
Sbjct: 254 PTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIV 313

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            +      V P+ V++N LI    + G   +A  +  EM   +  + P  +T   + KA 
Sbjct: 314 LQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEM--VLKKMKPTAVTYNLIAKAL 371

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVY-TIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              G+++RA  + + +    +     ++ T+      +T   E   S+ ++M  +G+ P+
Sbjct: 372 CKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPN 431

Query: 261 EVFLSALIDFAGHAGK-----------------------------------VEAAFEILQ 285
           +  ++A +      GK                                   ++ A +++Q
Sbjct: 432 DPLMTACMRELCKGGKHQEAVGIWFKTLNKGLGVNLATSNALIHGLCEGKYMKEATKVIQ 491

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
              N+GI +  I+Y+ ++  C      ++A++L+  M     KP + T N L+ A C+  
Sbjct: 492 TMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFNTLLHAYCNLG 551

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           ++ +T  +L  MK+ GL P+ ++Y  ++    +  D+      L++  + G+ PN+ ++ 
Sbjct: 552 KMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDRGLKPNVFIYN 611

Query: 406 CIIGMCSR 413
            +IG   R
Sbjct: 612 ALIGGYGR 619



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 132/286 (46%), Gaps = 15/286 (5%)

Query: 41  ISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQK---AIKEAFRFFKLVPNPTLSTFN 96
           + E   +++ M  KG+ ++D + Y+      CK  K   AIK      +    P L TFN
Sbjct: 483 MKEATKVIQTMLNKGI-ELDSITYNIMIRGCCKDSKMEEAIKLHGDMTRRGFKPDLFTFN 541

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMFE 148
            L+    +    E  F +L  ++  GL+ D   Y T+I    K+  +        + M  
Sbjct: 542 TLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRKAKEYLTELMDR 601

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            +KP+  ++NALI   G++G +  A D +  M +  + + P ++T G+LM    +AG V+
Sbjct: 602 GLKPNVFIYNALIGGYGRNGDISGAIDAVETMKS--NGIQPTNVTYGSLMYWMCHAGLVE 659

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A+ ++    + N+      YTI I    + G    A + +++M  +G+ P+++  + L+
Sbjct: 660 EAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRGISPNKLTYTTLM 719

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
                +G  E A ++  E    G+    I+Y +L+  CS   +  K
Sbjct: 720 YAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEVNSLDK 765



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 123/266 (46%), Gaps = 11/266 (4%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P     NA + A  ++G +D A +V  EM  E   V  +  +  A++KA   AG+VD   
Sbjct: 183 PSIKTCNAFLEALVRAGQLDAAREVFDEMR-ESRNVALNEYSYTAMIKALCKAGKVDAGF 241

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           E+   + +  ++ T   Y + ++   ++G  E A  +   M + G+ P  V    LI+  
Sbjct: 242 EMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFGILINGL 301

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
               +      +LQE +  G+S   + Y+ L+G      +  +AL L++ M   K+KPT 
Sbjct: 302 ARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLKKMKPTA 361

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCP-----NTITYSILLVACERKDDVEVGL 386
            T N +  ALC   ++ +   +L DM S+G+       NT+   +L    +R   +E  +
Sbjct: 362 VTYNLIAKALCKEGEMERAERILEDMLSIGMTVHCGLFNTVVAWLL----QRTRRLESVV 417

Query: 387 MLLSQAKEDGVIPN-LVMFKCIIGMC 411
            + ++    G+ PN  +M  C+  +C
Sbjct: 418 SITNEMVTRGMRPNDPLMTACMRELC 443



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 39/275 (14%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           + +  IT+  Q G++ RA D    +++   P  P   T  A ++A   AGQ+D AREV+ 
Sbjct: 153 LIHTFITSPAQ-GSLCRAADAFRVLSSRGAP--PSIKTCNAFLEALVRAGQLDAAREVFD 209

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            +         E   +A+N                          E   +A+I     AG
Sbjct: 210 EMR--------ESRNVALN--------------------------EYSYTAMIKALCKAG 235

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           KV+A FE+L E    G+   +++Y+ LM A   +   ++A  L   M+   + P+V T  
Sbjct: 236 KVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGRVEEAFRLKGRMEQGGMTPSVVTFG 295

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI  L  G++  +   VL +M+ LG+ PN + Y+ L+    RK      L L  +    
Sbjct: 296 ILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNELIGWHCRKGHCSQALRLFDEMVLK 355

Query: 396 GVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSF 428
            + P  V +  I   +C     E+A  + E +LS 
Sbjct: 356 KMKPTAVTYNLIAKALCKEGEMERAERILEDMLSI 390


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 177/404 (43%), Gaps = 19/404 (4%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF--RFF 84
           +N+L+    +  +    I L E M+R  ++     Y+      C+ SQ ++  A   +  
Sbjct: 50  FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMM 109

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-- 142
           KL   P++ T + L++     K    A  ++  + E G + D   +TTLI       K  
Sbjct: 110 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 169

Query: 143 -----VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                VD M +   +P+ V +  ++    + G  D A ++L +M  E   ++ D +    
Sbjct: 170 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM--EAAKIEADVVIFNT 227

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ +      VD A  ++K +    I+     Y+  I+C    G W  A  +  DM +K 
Sbjct: 228 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 287

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + P+ V  +ALID     GK   A ++  +   + I   I +Y+SL+          KA 
Sbjct: 288 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAK 347

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +++E M S    P V T N LI   C   ++    E+  +M   GL  +T+TY+ L+   
Sbjct: 348 QMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 407

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 418
               D +    +  Q   DGV P+++ +  ++ G+C+  + EKA
Sbjct: 408 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKA 451



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/333 (22%), Positives = 158/333 (47%), Gaps = 12/333 (3%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--------VDAM 146
           FN ++      +  + A  + + ++  G++ +   Y++LI+     G+         D +
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 284

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
            + + P+ V FNALI A  + G    A  +  +M      +DPD  T  +L+       +
Sbjct: 285 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDR 342

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           +D+A+++++ +   +       Y   I    ++   E    ++ +M+ +G++ D V  + 
Sbjct: 343 LDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 402

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 325
           LI    H G  + A ++ ++  + G+   I++YS L+ G C+N K  +KALE++++M+  
Sbjct: 403 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKS 461

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           ++K  +     +I  +C   ++    ++   +   G+ PN +TY+ ++     K  ++  
Sbjct: 462 EIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEA 521

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
             LL + KEDG +PN   +  +I    R  +KA
Sbjct: 522 YALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKA 554



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/361 (24%), Positives = 156/361 (43%), Gaps = 15/361 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G     ++LL  ME   +     +++    ++CK  + + +A   FK +     
Sbjct: 195 NGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK-YRHVDDALNLFKEMETKGI 253

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P + T++ L+S   S      A Q+L  + E  +  +   +  LI    K GK      
Sbjct: 254 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 313

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              D +  ++ PD   +N+L+        +D+A  +   M ++     PD +T   L+K 
Sbjct: 314 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK--DCFPDVVTYNTLIKG 371

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              + +V+   E+++ +    + G    YT  I      GD + A  V+  M   GV PD
Sbjct: 372 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 431

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  S L+D   + GK+E A E+    +   I + I  Y++++     A       +L+ 
Sbjct: 432 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 491

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            +    +KP V T N +I+ LC    L +   +L  MK  G  PN+ TY+ L+ A  R  
Sbjct: 492 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDG 551

Query: 381 D 381
           D
Sbjct: 552 D 552



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 149/339 (43%), Gaps = 15/339 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           + L +   + + ++L ++ME KG+      Y +    +C   +    +     ++    N
Sbjct: 230 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 289

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P L TFN L+           A ++   + +  +  D   Y +L+       ++D    M
Sbjct: 290 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 349

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE     +  PD V +N LI    +S  V+   ++  EM+     +  D +T   L++  
Sbjct: 350 FEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHR--GLVGDTVTYTTLIQGL 407

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            + G  D A++V+K +    +      Y+I ++     G  E A  V+D M K  +  D 
Sbjct: 408 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 467

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + +I+    AGKV+  +++      +G+   +++Y++++    + +  Q+A  L + 
Sbjct: 468 YIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 527

Query: 322 MKSIKLKPTVSTMNALITA-LCDGDQLPKTMEVLSDMKS 359
           MK     P   T N LI A L DGD+   + E++ +M+S
Sbjct: 528 MKEDGPLPNSGTYNTLIRAHLRDGDK-AASAELIREMRS 565



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 140/337 (41%), Gaps = 23/337 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L   GR S+   LL DM  K +      ++A      K  K + EA + +    K   +P
Sbjct: 267 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFV-EAEKLYDDMIKRSIDP 325

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
            + T+N L++        + A Q+   +       D   Y TLI    KS +V+   E  
Sbjct: 326 DIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELF 385

Query: 151 KP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +         D V +  LI      G  D A  V  +M ++  P  PD +T   L+    
Sbjct: 386 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP--PDIMTYSILLDGLC 443

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD----WEFACSVYDDMTKKGVI 258
           N G++++A EV+  + K  IK    +YT  I    + G     W+  CS    ++ KGV 
Sbjct: 444 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS----LSLKGVK 499

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+ V  + +I        ++ A+ +L++ K  G      +Y++L+ A     +   + EL
Sbjct: 500 PNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAEL 559

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
              M+S +     ST+  +   L DG      +++LS
Sbjct: 560 IREMRSCRFVGDASTIGLVANMLHDGRLDKSFLDMLS 596



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/238 (21%), Positives = 104/238 (43%), Gaps = 14/238 (5%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  ++  M K   +P  V  + L+       K +    + ++ +   I  G+ +Y+ L+ 
Sbjct: 31  AIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILIN 90

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                     AL L   M  +  +P++ T+++L+   C G ++   + ++  M  +G  P
Sbjct: 91  CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRP 150

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 413
           +TIT++ L+      +     + L+ +  + G  PNLV +  ++ G+C R          
Sbjct: 151 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLL 210

Query: 414 -RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
            + E A+ +   V+ FN+    + + +    AL +++E    G  P V   S ++ CL
Sbjct: 211 NKMEAAK-IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 267



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/253 (19%), Positives = 109/253 (43%), Gaps = 11/253 (4%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P  +    L+ A A   + D    + + + +  I      Y I INC  +      A ++
Sbjct: 45  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 104

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
              M K G  P  V LS+L++   H  ++  A  ++ +    G     I++++L+     
Sbjct: 105 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 164

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                +A+ L + M     +P + T   ++  LC        + +L+ M++  +  + + 
Sbjct: 165 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 224

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKA-------- 418
           ++ ++ +  +   V+  L L  + +  G+ PN+V +  +I  +CS  R+  A        
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 284

Query: 419 -RTLNEHVLSFNS 430
            + +N ++++FN+
Sbjct: 285 EKKINPNLVTFNA 297


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 106/467 (22%), Positives = 205/467 (43%), Gaps = 36/467 (7%)

Query: 71  CKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           C       EAF  F  +      PT+ T N L+S+      +E A+ +   +    +K+ 
Sbjct: 161 CCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSS 220

Query: 127 CKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLA 178
              +  +I    K GK+    +         VKP+ V +N ++     SG V+ A  +L 
Sbjct: 221 VYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILT 280

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
            M  +   ++PD  T G+L+      G+++ A ++++ + +  ++ +  +Y   I+    
Sbjct: 281 TMKRQ--KIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCN 338

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G+ + A +  D+M KKG+ P     ++LI       + + A  +++E + +GIS   I+
Sbjct: 339 KGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAIT 398

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y+ L+       N +KA  L++ M +  +KPT  T  +L+  L   +++ +  ++   + 
Sbjct: 399 YNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKIT 458

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYE 416
           S G+ P+ I ++ L+       +V+    LL       V P+ V F  I+ G C   + E
Sbjct: 459 SEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVE 518

Query: 417 KARTLNEHV---------LSFN------SGRPQIENKWTSLALMVYREAIVAGTIPTVEV 461
           +AR L + +         +SFN      S R  I++     A  V  E +  G  PTV  
Sbjct: 519 EARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKD-----AFRVRNEMLDTGFNPTVLT 573

Query: 462 VSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD 508
            + ++  L      D+ E L++ +         +   +LI+G  + +
Sbjct: 574 YNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVN 620



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 150/327 (45%), Gaps = 19/327 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-KSQKAIKEAFR--F 83
           +Y  LI    +QGR+ E   + E+M +KGL     +Y+      C K    +  A++   
Sbjct: 293 TYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEM 352

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKS 140
            K   +PT+ST+N L+      + ++ A  +++ +QE G+  D   Y  LI     CA +
Sbjct: 353 LKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANA 412

Query: 141 GKV----DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            K     D M  + +KP +  + +L+    +   +  A D+  ++ +E   V PD I   
Sbjct: 413 KKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSE--GVLPDAIMFN 470

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           AL+    +   V  A E+ K + +  +      +   +    + G  E A  ++D+M ++
Sbjct: 471 ALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRR 530

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQK 314
           G+ PD +  + LI      G ++ AF +  E  + G +  +++Y++L+ G C N +    
Sbjct: 531 GIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKN-QEGDL 589

Query: 315 ALELYEHMKSIKLKPTVSTMNALITAL 341
           A EL + M S  + P  +T   LI  +
Sbjct: 590 AEELLKEMVSKGMTPDDTTYFTLIEGI 616



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 12/293 (4%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           +VF+ LI +C      D AF+    M  +   V P   T  +L+       + + A  +Y
Sbjct: 152 IVFDYLIKSCCDMNRADEAFECFYTMKEK--GVLPTIETCNSLLSLFLKLNRTEAAWVLY 209

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             + +  IK +   + I IN   + G  + A      M   GV P+ V  + ++     +
Sbjct: 210 AEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSS 269

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G+VEAA  IL   K Q I     +Y SL+         ++A +++E M    L+P+    
Sbjct: 270 GRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIY 329

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC---ERKDDVEVGLMLLSQ 391
           N LI   C+   L        +M   G+ P   TY+ L+ A    +R D+ E    ++ +
Sbjct: 330 NTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAEC---MIKE 386

Query: 392 AKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            +E G+ P+ + +  +I G C     +KA  L++ +L+  SG    +  +TSL
Sbjct: 387 IQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLA--SGIKPTKKTYTSL 437



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 69/354 (19%), Positives = 153/354 (43%), Gaps = 26/354 (7%)

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           I    L+K+C +  + D A E +  + +  +  T E     ++   +    E A  +Y +
Sbjct: 152 IVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAE 211

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK 310
           M +  +       + +I+     GK++ A + +   +  G+   I++Y++++ G CS+ +
Sbjct: 212 MFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGR 271

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             + A  +   MK  K++P   T  +LI+ +C   +L +  ++  +M   GL P+ + Y+
Sbjct: 272 -VEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYN 330

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-----------GMCSRRYEKAR 419
            L+     K ++++      +  + G+ P +  +  +I             C  +  + +
Sbjct: 331 TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEK 390

Query: 420 TLNEHVLSFN---SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLP---Y 473
            ++   +++N   +G  +  N     A +++ E + +G  PT +  + +L  L       
Sbjct: 391 GISPDAITYNILINGYCRCAN--AKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMK 448

Query: 474 NADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
            AD   + + + GV  DA+      +LIDG         AF LL++     + P
Sbjct: 449 EADDLFKKITSEGVLPDAIM---FNALIDGHCSNSNVKGAFELLKDMDRMKVPP 499



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 123/308 (39%), Gaps = 57/308 (18%)

Query: 271 AGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
            G    +   FE L  ++++ G    I+ +  L+ +C +     +A E +  MK   + P
Sbjct: 126 GGTTNSIREIFEFLAASRDRLGFKSSIV-FDYLIKSCCDMNRADEAFECFYTMKEKGVLP 184

Query: 330 TVSTMNAL-----------------------------------ITALCDGDQLPKTMEVL 354
           T+ T N+L                                   I  LC   +L K  + +
Sbjct: 185 TIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFV 244

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
             M++ G+ PN +TY+ ++        VE    +L+  K   + P+   +  +I GMC +
Sbjct: 245 GHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQ 304

Query: 414 -RYEKARTLNEHVLS---------FNSGRPQIENKWTSLALMVYR-EAIVAGTIPTVEVV 462
            R E+A  + E ++          +N+      NK        Y+ E +  G  PT+   
Sbjct: 305 GRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTY 364

Query: 463 SKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGFGE--YDPRAFSLLEE 517
           + ++  L +    D  E +++ +   G+S DA+  +    LI+G+       +AF L +E
Sbjct: 365 NSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYN---ILINGYCRCANAKKAFLLHDE 421

Query: 518 AASFGIVP 525
             + GI P
Sbjct: 422 MLASGIKP 429


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 189/406 (46%), Gaps = 19/406 (4%)

Query: 31  SYNRLI----RQGRISEC-IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           SYN +I    ++G + +  I   E ++R+  +  D V +          +A+  A     
Sbjct: 13  SYNTIIDGLFKEGDVDKAYITYHEMLDRR--VSPDAVTYNSIIAALSKAQAMDRAMEVLT 70

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--- 142
           ++  P   T+N +M    SS  SE A  + R +   G++ D   Y +L+    K+GK   
Sbjct: 71  VMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTE 130

Query: 143 ----VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
                D+M +  +KPD   +  L+      GA+    D+LA M    + +  DH     L
Sbjct: 131 ARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQ--NGMQLDHHVFNIL 188

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           + A     +VD    V+  + +  +      Y   I+   + G  + A   ++ M  KG+
Sbjct: 189 ICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGL 248

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P+ V  ++LI       K E A E++ E  +QGI+  I+ +++++ +        ++ +
Sbjct: 249 TPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKK 308

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L++ +  I + P V T + LI   C   ++   M++L+ M S+GL P+++TYS L+    
Sbjct: 309 LFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYC 368

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
           + + +E  L L  + + +GV P+++ +  I+ G+  +RR   A+ L
Sbjct: 369 KINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKEL 414



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 168/380 (44%), Gaps = 19/380 (5%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMS-VCASSKDSEGAFQVLRLV 118
           Y++     C S ++ K    F K+  +   P + T+N LM  +C + K +E A ++   +
Sbjct: 80  YNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTE-ARKIFDSM 138

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAV 170
            + GLK D   Y TL+   A  G +  M +         ++ D  VFN LI A  +   V
Sbjct: 139 VKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKV 198

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
           D    V ++M  +   + P+ +    ++      G++D A   ++ +    +     VYT
Sbjct: 199 DEVVLVFSKMRQQ--GLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYT 256

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             I+       WE A  +  ++  +G+ P+ VF + ++D     G+V  + ++     + 
Sbjct: 257 SLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHI 316

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G++  +I+YS+L+     A     A++L   M S+ LKP   T + LI   C  +++   
Sbjct: 317 GVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDA 376

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
           + +  +M+S G+ P+ ITY+I+L    R         L ++  E G    L  +  I+  
Sbjct: 377 LALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIIL-- 434

Query: 411 CSRRYEKARTLNEHVLSFNS 430
               + K  +L  H   F +
Sbjct: 435 --MDFAKTNSLMMHFGCFRT 452



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 174/401 (43%), Gaps = 46/401 (11%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           PD V +N +I    + G VD+A+    EM      V PD +T  +++ A + A  +DRA 
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDR--RVSPDAVTYNSIIAALSKAQAMDRAM 66

Query: 212 EVYKMIHKYNIKGTPEVYT---IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
           EV        +   P  +T   I    CS +G  E A  ++  M   G+ PD V  ++L+
Sbjct: 67  EV------LTVMVMPNCFTYNSIMHGYCS-SGQSEKAIGIFRKMCSDGIEPDVVTYNSLM 119

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           D+    GK   A +I      +G+   I +Y +L+   ++     +  +L   M    ++
Sbjct: 120 DYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQ 179

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
                 N LI A    +++ + + V S M+  GL PN + Y  ++    +   ++  ++ 
Sbjct: 180 LDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLN 239

Query: 389 LSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTL---------NEHVLSFNS------- 430
             Q  + G+ PN+V++  +I  +C+  ++EKA  L         N +++ FN+       
Sbjct: 240 FEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCK 299

Query: 431 -GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---G 486
            GR     K   L   +       G  P V   S ++    L    D   +L+  +   G
Sbjct: 300 EGRVIESKKLFDLLGHI-------GVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVG 352

Query: 487 VSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
           +  D++  S   +LI+G+ + +    A +L +E  S G+ P
Sbjct: 353 LKPDSVTYS---TLINGYCKINRMEDALALFKEMESNGVNP 390


>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
 gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
          Length = 638

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 155/350 (44%), Gaps = 17/350 (4%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            PT   + ML+++     D  GA  +   ++    + D   YT LI    K+G++D  + 
Sbjct: 262 QPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYH 321

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                  E  +PD VV N +I   G++G +D A  +  EM        P  +T   ++KA
Sbjct: 322 FFYEMQREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMG--TLRCIPSVVTYNTIIKA 379

Query: 201 CANAGQVDRAREV---YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
              +    RA EV   ++ + +  I  +   Y+I I+   +T   E A  + ++M +KG 
Sbjct: 380 LFESK--SRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF 437

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P      +LID  G A + + A E+ QE K    S     Y+ ++     A     A+ 
Sbjct: 438 PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAIN 497

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           +++ M  +   P V   NAL++ L     L + +  +  M+  G  P+  +Y+I+L    
Sbjct: 498 MFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLA 557

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV 425
           +       + +LS  K+  V P++V +  ++G  S    +E+A  L E +
Sbjct: 558 KTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEM 607



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/368 (21%), Positives = 154/368 (41%), Gaps = 47/368 (12%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LIR     GRI E      +M+R+G    D V      N       + +A + F+ 
Sbjct: 302 TYTELIRGLGKAGRIDEAYHFFYEMQREGCRP-DTVVMNNMINFLGKAGRLDDAMKLFQE 360

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P++ T+N ++     SK                               +++ +
Sbjct: 361 MGTLRCIPSVVTYNTIIKALFESK-------------------------------SRASE 389

Query: 143 VDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
           V + FE +K     P    ++ LI    ++  +++A  +L EM+ +  P  P      +L
Sbjct: 390 VPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCP--AAYCSL 447

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           + A   A + D A E+++ + +     +  VY + I    + G  + A +++D+M K G 
Sbjct: 448 IDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGC 507

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD    +AL+      G ++ A   ++  +  G    I SY+ ++   +      +A+E
Sbjct: 508 APDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAME 567

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           +  +MK   ++P V + N ++ AL       +  +++ +M +LG   + ITYS +L A  
Sbjct: 568 MLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLITYSSILEAIG 627

Query: 378 RKDDVEVG 385
           + D    G
Sbjct: 628 KVDHEYTG 635



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 125/297 (42%), Gaps = 40/297 (13%)

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V P E  LS ++   G+A  V  A  I  + K +       +Y+S++    +   + K  
Sbjct: 157 VTPTE--LSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYGKVH 214

Query: 317 ELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           ELY  M +     P   T +ALI+A C   +     ++L++MK  G+ P T  Y++L+  
Sbjct: 215 ELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITL 274

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF-----NS 430
             + DDV   L L  + +     P++  +  +I    R   KA  ++E    F       
Sbjct: 275 FFKLDDVHGALSLFEEMRHQYCRPDVFTYTELI----RGLGKAGRIDEAYHFFYEMQREG 330

Query: 431 GRPQ--IENKWTSL---------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR- 478
            RP   + N   +          A+ +++E      IP+V   + ++  L   + +  R 
Sbjct: 331 CRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKAL---FESKSRA 387

Query: 479 -------ERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPC 526
                  ER+ E+ G+S  +   S    LIDGF + +   +A  LLEE    G  PC
Sbjct: 388 SEVPSWFERMKES-GISPSSFTYS---ILIDGFCKTNRMEKAMMLLEEMDEKGFPPC 440


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 168/366 (45%), Gaps = 18/366 (4%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           ++ L R G     + L  +  +KG++            +CK  K  K    F  LV    
Sbjct: 306 FDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGL 365

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----D 144
            PT   +N L++     +D  GAF +   ++   ++ D   Y  LI    K   V    D
Sbjct: 366 VPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAED 425

Query: 145 AMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            + E     V P    FN LI A G +G +++ F VL++M  +   +  D I+ G+++KA
Sbjct: 426 LVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQK--GIKSDVISFGSVVKA 483

Query: 201 CANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               G++  A  +   MI+K ++    +VY   I+   ++GD E A  + + M   GV  
Sbjct: 484 FCKNGKIPEAVAILDDMIYK-DVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSA 542

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
             V  + L+     + +++ A E++   +NQG+   ++SY++++ AC N  +  KALEL 
Sbjct: 543 SIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELL 602

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VAC 376
           + M    ++PT+ T + L++AL    ++     +   M    + P++  Y I++   V C
Sbjct: 603 QEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYVRC 662

Query: 377 ERKDDV 382
           E    V
Sbjct: 663 ENDSKV 668



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 165/363 (45%), Gaps = 23/363 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA------IKEA 80
           +YN L+    R GR+ E   L+++M    +L     Y   F  + ++ ++        E+
Sbjct: 266 TYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAES 325

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +   ++   T S   +L  +C   K ++ A QV  ++   GL     +Y TLI    + 
Sbjct: 326 LKKGVMLGAYTCSI--LLNGLCKDGKVAK-AKQVFEMLVHTGLVPTTVIYNTLINGYCQV 382

Query: 141 GKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
             +   F         +++PD + +NALI    +   V +A D++ EM  E   VDP   
Sbjct: 383 RDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEM--EKSGVDPSVE 440

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+ A   AGQ+++   V   + +  IK     +   +    + G    A ++ DDM
Sbjct: 441 TFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDM 500

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             K V P+    +++ID    +G  E A  ++++ KN G+S  I++Y+ L+     +   
Sbjct: 501 IYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQI 560

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            +A EL   +++  L+P V + N +I+A C+     K +E+L +M   G+ P   T   L
Sbjct: 561 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTL 620

Query: 373 LVA 375
           + A
Sbjct: 621 VSA 623



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/437 (21%), Positives = 189/437 (43%), Gaps = 57/437 (13%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P   ++N++++    S     A +V   + + G+  +   Y T+I    K G ++A F
Sbjct: 190 PPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGF 249

Query: 148 --------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT------ 193
                   +  KP+ V +N L++   ++G +D    ++ EM +  H + PD  T      
Sbjct: 250 RLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMAS--HSMLPDGFTYSILFD 307

Query: 194 ------------------------IGA-----LMKACANAGQVDRAREVYKMIHKYNIKG 224
                                   +GA     L+      G+V +A++V++M+    +  
Sbjct: 308 GLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVP 367

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
           T  +Y   IN   Q  D   A  +++ M  + + PD +  +ALI+       V  A +++
Sbjct: 368 TTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLV 427

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
            E +  G+   + ++++L+ A   A   +K   +   M+   +K  V +  +++ A C  
Sbjct: 428 MEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKN 487

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            ++P+ + +L DM    + PN   Y+ ++ A     D E  L+L+ + K  GV  ++V +
Sbjct: 488 GKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTY 547

Query: 405 KCII-GMC-SRRYEKA---------RTLNEHVLSFNSGRPQIENKW-TSLALMVYREAIV 452
             ++ G+C S + ++A         + L   V+S+N+      NK  T  AL + +E   
Sbjct: 548 NLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNK 607

Query: 453 AGTIPTVEVVSKVLGCL 469
            G  PT+     ++  L
Sbjct: 608 YGIRPTLRTCHTLVSAL 624



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 129/320 (40%), Gaps = 27/320 (8%)

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
           G+   V  AF +L    A      PD      +++AC  AG +D A  + + + +     
Sbjct: 136 GRHADVRAAFGLLVAAGAR-----PDTFAWNKVVQACVAAGDLDVALAMLRRMGRSEGAP 190

Query: 225 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
            P+   Y + I    ++G    A  V+D+M   GV P+ +  + +ID     G +EA F 
Sbjct: 191 PPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFR 250

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +  +  + G    +++Y+ L+          +   L + M S  + P   T + L   L 
Sbjct: 251 LRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLT 310

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
              +    + + ++    G+     T SILL    +   V     +       G++P  V
Sbjct: 311 RTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTV 370

Query: 403 MFKCII-GMCSRR--------YE--KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAI 451
           ++  +I G C  R        +E  K+R +    +++N+    + N    L ++   E +
Sbjct: 371 IYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNA----LINGLCKLEMVTKAEDL 426

Query: 452 V-----AGTIPTVEVVSKVL 466
           V     +G  P+VE  + ++
Sbjct: 427 VMEMEKSGVDPSVETFNTLI 446


>gi|299117464|emb|CBN73967.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 731

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/438 (22%), Positives = 183/438 (41%), Gaps = 56/438 (12%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--------- 88
            GR  E + LL+DM R+G+      Y A     C++     EA    + +          
Sbjct: 175 SGRWKEALALLKDMPRQGVRPDIHTYSA-AMRACRAAGRTGEALSLLETMRRSARGERER 233

Query: 89  --------------NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
                          P    FN+ +  CA  +  E A  +L +++  G+  D   + ++I
Sbjct: 234 GGDAESGEANAASLRPDAFCFNICIDACAKGRLHERAKALLGVMRSDGVSPDVVSFNSVI 293

Query: 135 TTCAKSG----KVDAMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
                +G     +  M E      V P+ V + + I ACG S  +DRA  +L E  A + 
Sbjct: 294 NALGMAGLWKEALGVMEEMVMDGGVTPNSVTYASAINACGNSRQLDRALGLLKE--ARLA 351

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            ++       A + AC +AG  D A  + K + +  +  T   Y+  I+ C + G  + A
Sbjct: 352 GIEVGASAYNAAIAACGHAGSADEALPLLKEMEERRVPRTVITYSSLIDVCGKGGLPDEA 411

Query: 246 CSVYDDMTKKGVIPDEVFLSALID-----------------FAGHAGKVEAAFEILQEAK 288
            +++  M  +G++P+ +  +ALI                   +G  G++ A+     + +
Sbjct: 412 LNLFQKMISEGILPNAITYNALIHASAGGGLKSGDGTVSSPVSGGRGRIGASGGGEDDPR 471

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
           ++G  V + +  +        + W++ + L E M+    +P + + N  ++A        
Sbjct: 472 DEGGEV-LGAEPAGGKGLGGIRRWERVMPLVEEMQKAGYQPDLLSFNLALSACARRGDAN 530

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +T+ +L DM+   L P T ++S  + +CER    +  L LL + K  GV   L+ F   +
Sbjct: 531 RTLRLLGDMRRADLLPTTYSFSSAVKSCERAGKADEVLALLGRMKSGGVSRTLITFNSAL 590

Query: 409 GMCS---RRYEKARTLNE 423
             C+   RR +  R L+E
Sbjct: 591 LACAKDGRREDSLRILSE 608



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 100/461 (21%), Positives = 188/461 (40%), Gaps = 79/461 (17%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   +H+Y+  +R     GR  E + LLE M R    + ++   A      +S +A   +
Sbjct: 193 VRPDIHTYSAAMRACRAAGRTGEALSLLETMRRSARGERERGGDA------ESGEANAAS 246

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            R       P    FN+ +  CA  +  E A  +L +++  G+  D   + ++I     +
Sbjct: 247 LR-------PDAFCFNICIDACAKGRLHERAKALLGVMRSDGVSPDVVSFNSVINALGMA 299

Query: 141 G----KVDAMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           G     +  M E      V P+ V + + I ACG S  +DRA  +L E  A +  ++   
Sbjct: 300 GLWKEALGVMEEMVMDGGVTPNSVTYASAINACGNSRQLDRALGLLKE--ARLAGIEVGA 357

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
               A + AC +AG  D A  + K + +  +  T   Y+  I+ C + G  + A +++  
Sbjct: 358 SAYNAAIAACGHAGSADEALPLLKEMEERRVPRTVITYSSLIDVCGKGGLPDEALNLFQK 417

Query: 252 MTKKGVIPDEVFLSALIDFAGHAG------------------------------------ 275
           M  +G++P+ +  +ALI  +   G                                    
Sbjct: 418 MISEGILPNAITYNALIHASAGGGLKSGDGTVSSPVSGGRGRIGASGGGEDDPRDEGGEV 477

Query: 276 ---------------KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
                          + E    +++E +  G    ++S++  + AC+   +  + L L  
Sbjct: 478 LGAEPAGGKGLGGIRRWERVMPLVEEMQKAGYQPDLLSFNLALSACARRGDANRTLRLLG 537

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+   L PT  + ++ + +     +  + + +L  MKS G+    IT++  L+AC +  
Sbjct: 538 DMRRADLLPTTYSFSSAVKSCERAGKADEVLALLGRMKSGGVSRTLITFNSALLACAKDG 597

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
             E  L +LS+ K++GV P+   F+  +  C R  + A  L
Sbjct: 598 RREDSLRILSEMKKEGVSPDGKSFRLAMQACGRAGDPAGAL 638



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 139/299 (46%), Gaps = 35/299 (11%)

Query: 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVF 157
           +D  GA   LR  + A   A  + +T+ +   A SG+         D   + V+PD   +
Sbjct: 144 RDWRGALHALRSAEGA---ACARCHTSAVEAMATSGRWKEALALLKDMPRQGVRPDIHTY 200

Query: 158 NALITACGQSGAVDRAFDVLAEMN-----------------AEVHPVDPDHITIGALMKA 200
           +A + AC  +G    A  +L  M                  A    + PD       + A
Sbjct: 201 SAAMRACRAAGRTGEALSLLETMRRSARGERERGGDAESGEANAASLRPDAFCFNICIDA 260

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMT-KKGV 257
           CA     +RA+ +  ++    +  +P+V  +   IN     G W+ A  V ++M    GV
Sbjct: 261 CAKGRLHERAKALLGVMRSDGV--SPDVVSFNSVINALGMAGLWKEALGVMEEMVMDGGV 318

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P+ V  ++ I+  G++ +++ A  +L+EA+  GI VG  +Y++ + AC +A +  +AL 
Sbjct: 319 TPNSVTYASAINACGNSRQLDRALGLLKEARLAGIEVGASAYNAAIAACGHAGSADEALP 378

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLP-KTMEVLSDMKSLGLCPNTITYSILLVA 375
           L + M+  ++  TV T ++LI  +C    LP + + +   M S G+ PN ITY+ L+ A
Sbjct: 379 LLKEMEERRVPRTVITYSSLID-VCGKGGLPDEALNLFQKMISEGILPNAITYNALIHA 436



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 155/397 (39%), Gaps = 39/397 (9%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  + S+N +I      G   E + ++E+M   G +  + V +A   N C + + +  A
Sbjct: 282 VSPDVVSFNSVINALGMAGLWKEALGVMEEMVMDGGVTPNSVTYASAINACGNSRQLDRA 341

Query: 81  FRFFKLVPNPTLST----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
               K      +      +N  ++ C  +  ++ A  +L+ ++E  +      Y++LI  
Sbjct: 342 LGLLKEARLAGIEVGASAYNAAIAACGHAGSADEALPLLKEMEERRVPRTVITYSSLIDV 401

Query: 137 CAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PV 187
           C K G  D           E + P+ + +NALI A    G        L   +  V  PV
Sbjct: 402 CGKGGLPDEALNLFQKMISEGILPNAITYNALIHASAGGG--------LKSGDGTVSSPV 453

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
                 IGA      + G  D  R+    +      G   +  I          WE    
Sbjct: 454 SGGRGRIGA------SGGGEDDPRDEGGEVLGAEPAGGKGLGGIR--------RWERVMP 499

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           + ++M K G  PD +  +  +      G       +L + +   +     S+SS + +C 
Sbjct: 500 LVEEMQKAGYQPDLLSFNLALSACARRGDANRTLRLLGDMRRADLLPTTYSFSSAVKSCE 559

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            A    + L L   MKS  +  T+ T N+ + A     +   ++ +LS+MK  G+ P+  
Sbjct: 560 RAGKADEVLALLGRMKSGGVSRTLITFNSALLACAKDGRREDSLRILSEMKKEGVSPDGK 619

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           ++ + + AC R  D    L++L    + G+ P    F
Sbjct: 620 SFRLAMQACGRAGDPAGALVILRGMAKAGIPPGDRSF 656


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 180/398 (45%), Gaps = 27/398 (6%)

Query: 31  SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNV----CKSQKAIKEAFRFF-- 84
           +YN LI+    S   D+ E + ++ L     V    F +V    C S      A RF   
Sbjct: 394 TYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLC-SHHMFDSALRFVGE 452

Query: 85  ----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                + P   L T  ++  +C   K S+     L+ + + G   D K    L+    ++
Sbjct: 453 MLLRNMSPGGGLLT-TLISGLCKHGKHSKAVELWLKFLNK-GFLVDTKTSNALLHGLCEA 510

Query: 141 GKVDAMFENVKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           GK++  F   K         DRV +N LI+ C  +  +D AF  + EM  +   + PD+ 
Sbjct: 511 GKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKK--GLKPDNY 568

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYD 250
           T   L++   N  +V+ A + +    +  +   P+VYT  + I+ C +    E    ++D
Sbjct: 569 TYSILIRGLLNMNKVEEAIQFWGDCKRNGM--IPDVYTYSVMIDGCCKAERTEEGQKLFD 626

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M    + P+ V  + LI     +G++  A E+ ++ K++GIS    +Y+SL+   S   
Sbjct: 627 EMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIIS 686

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             ++A  L E M+   L+P V    ALI       Q+ K   +L +M S  + PN ITY+
Sbjct: 687 RVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYT 746

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +++    R  +V     LL + +E G++P+ + +K  I
Sbjct: 747 VMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFI 784



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 112/486 (23%), Positives = 206/486 (42%), Gaps = 38/486 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVP--- 88
           N   + G++ E I+L   ME  G++     Y+     +  S +   EAF F  K+V    
Sbjct: 260 NAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGR-YDEAFMFKEKMVERGV 318

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            PTL T+++L+     +K    A+ VL+ + E G   +  +Y  LI +  ++G ++   E
Sbjct: 319 EPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIE 378

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    +      +N LI    +SG  D A  +L EM +    V+    T   +   
Sbjct: 379 IKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFT-SVICLL 437

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           C++       R V +M+ + N+     + T  I+   + G    A  ++     KG + D
Sbjct: 438 CSHHMFDSALRFVGEMLLR-NMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVD 496

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               +AL+     AGK+E  F I +E   +G  +  +SY++L+  C   K   +A    +
Sbjct: 497 TKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMD 556

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    LKP   T + LI  L + +++ + ++   D K  G+ P+  TYS+++  C + +
Sbjct: 557 EMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAE 616

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 440
             E G  L  +   + + PN V++  +IG   R                SGR        
Sbjct: 617 RTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCR----------------SGR-------L 653

Query: 441 SLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSL 500
           S+AL +  +    G  P     + ++  + +    +  + L+E + +        +  +L
Sbjct: 654 SMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTAL 713

Query: 501 IDGFGE 506
           IDG+G+
Sbjct: 714 IDGYGK 719



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 6/227 (2%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY--TIAINCCSQTGDWEFAC 246
           P   T   L+ +   A +  +  E + ++ K     +P+VY  T AIN   + G  E A 
Sbjct: 216 PSKTTCNILLTSLVRATEFQKCCEAFHVVCK---GVSPDVYLFTTAINAFCKGGKVEEAI 272

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            ++  M + GV+P+ V  + +ID  G +G+ + AF   ++   +G+   +I+YS L+   
Sbjct: 273 ELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGL 332

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
           + AK    A  + + M      P V   N LI +L +   L K +E+   M S GL   +
Sbjct: 333 TKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTS 392

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCS 412
            TY+ L+    +    ++   LL +    G   N   F  +I  +CS
Sbjct: 393 STYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCS 439



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 119/274 (43%), Gaps = 15/274 (5%)

Query: 152 PDRVVFNALITACGQSGAVDR---AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           P +   N L+T+  ++    +   AF V+ +       V PD       + A    G+V+
Sbjct: 216 PSKTTCNILLTSLVRATEFQKCCEAFHVVCK------GVSPDVYLFTTAINAFCKGGKVE 269

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A E++  + +  +      Y   I+    +G ++ A    + M ++GV P  +  S L+
Sbjct: 270 EAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILV 329

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                A ++  A+ +L+E   +G    +I Y++L+ +   A +  KA+E+ + M S  L 
Sbjct: 330 KGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLS 389

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVE--- 383
            T ST N LI   C   Q      +L +M S+G   N  + T  I L+      D     
Sbjct: 390 LTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRF 449

Query: 384 VGLMLL-SQAKEDGVIPNLVMFKCIIGMCSRRYE 416
           VG MLL + +   G++  L+   C  G  S+  E
Sbjct: 450 VGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVE 483



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/238 (22%), Positives = 104/238 (43%), Gaps = 23/238 (9%)

Query: 54  KGLLDMDKVYHA-RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAF 112
           +GLL+M+KV  A +F+  CK    I            P + T+++++  C  ++ +E   
Sbjct: 575 RGLLNMNKVEEAIQFWGDCKRNGMI------------PDVYTYSVMIDGCCKAERTEEGQ 622

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITAC 164
           ++   +    L+ +  +Y  LI    +SG++        D   + + P+   + +LI   
Sbjct: 623 KLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGM 682

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
                V+ A  +L EM  E   ++P+     AL+      GQ+ +   + + +H  N+  
Sbjct: 683 SIISRVEEAKLLLEEMRME--GLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHP 740

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
               YT+ I   ++ G+   A  +  +M +KG++PD +     I      G V  AF+
Sbjct: 741 NKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGYLKQGGVLQAFK 798


>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
 gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
          Length = 886

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 170/388 (43%), Gaps = 13/388 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKSQKAIKEAFRFFKLVP-NPTLS 93
           + G +    +L+ +ME  G+     VYH+    + V + +K     F   K     PT+ 
Sbjct: 368 QSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTII 427

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT--------TCAKSGKVDA 145
           ++  L+++         A  + + ++  G+K + K Y+ LI           A S   D 
Sbjct: 428 SYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDM 487

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           +   ++PDR ++N L+ A  + G +DRA  +   M  E   + P + T   +++  A AG
Sbjct: 488 IKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKER--MQPSNRTFRPIIEGFAVAG 545

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            + RA +   ++ +     T   Y   I+   +    E A SV D M+  G+ P+E   +
Sbjct: 546 DMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYT 605

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            ++     +G +  AFE   + K  G+ + +  Y +L+ AC  +   Q AL +   M   
Sbjct: 606 IIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ 665

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           K+       N LI        + +  ++L  MK  G+ PN  T++  + AC +  D++  
Sbjct: 666 KIPRNTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRA 725

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             ++ +  + G+ PN+  F  +I   +R
Sbjct: 726 ENVIQEMADVGLKPNVKTFTTLIKGWAR 753



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 160/355 (45%), Gaps = 15/355 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N  ++ G++ + I + ++ME  G+   +K Y +   N          AF  F    K   
Sbjct: 434 NLYVKVGKVPKAIAISKEMESHGIKHNNKTY-SMLINGFIHLHDFANAFSIFEDMIKSGL 492

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P  + +N+L+       + + A ++   +Q+  ++   + +  +I   A +G +   F+
Sbjct: 493 QPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFD 552

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            +         P  + +NALI    +   V++A  VL +M+  +  + P+  T   +M+ 
Sbjct: 553 TLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMS--IAGIAPNEHTYTIIMRG 610

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A +G + +A E +  I +  +K    +Y   +  C ++G  + A +V  +M+ + +  +
Sbjct: 611 YAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRN 670

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID     G V  A ++L++ K  GI   I +++S + AC  A + Q+A  + +
Sbjct: 671 TFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQ 730

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            M  + LKP V T   LI          + ++   +MKS GL P+   Y  L+ +
Sbjct: 731 EMADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTS 785



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 158/365 (43%), Gaps = 41/365 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
           P    F  L+   A + D  GA   +  ++  G++     Y+ LI+   K+      D +
Sbjct: 284 PNAFVFTSLVHAYAVAGDMRGALSCVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNL 343

Query: 147 FENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAE--VHPVD----------- 188
           F+  K      + ++++ +I A  QSG +DRA +++ EM  +    P+D           
Sbjct: 344 FKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTV 403

Query: 189 --------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                               P  I+ G L+      G+V +A  + K +  + IK   + 
Sbjct: 404 VQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKT 463

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y++ IN      D+  A S+++DM K G+ PD    + L++     G ++ A  I +  +
Sbjct: 464 YSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQ 523

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            + +     ++  ++   + A + ++A +  + M+     PTV T NALI  L    Q+ 
Sbjct: 524 KERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVE 583

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           K + VL  M   G+ PN  TY+I++       D+       ++ KE G+  ++ +++ ++
Sbjct: 584 KAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLL 643

Query: 409 GMCSR 413
             C +
Sbjct: 644 RACCK 648



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 137/339 (40%), Gaps = 10/339 (2%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF---- 147
           +  ++ +M      +D +    V   ++E G K     Y  LI    K GKV        
Sbjct: 391 IDVYHSMMHGYTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISK 450

Query: 148 ----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 +K +   ++ LI           AF +  +M      + PD      L++A   
Sbjct: 451 EMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKS--GLQPDRAIYNLLVEAFCK 508

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G +DRA  +++ + K  ++ +   +   I   +  GD + A    D M + G  P  + 
Sbjct: 509 MGNMDRAIRIFERMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMT 568

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +ALI       +VE A  +L +    GI+    +Y+ +M   + + +  KA E +  +K
Sbjct: 569 YNALIHGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIK 628

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              LK  V     L+ A C   ++   + V  +M    +  NT  Y+IL+    R+ DV 
Sbjct: 629 ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVW 688

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
               LL Q KEDG+ PN+  F   I  C +  +  R  N
Sbjct: 689 EAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAEN 727



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 140/321 (43%), Gaps = 15/321 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPN 89
           N  I     +    + EDM + GL     +Y+      CK     +AI+   R  K    
Sbjct: 469 NGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQ 528

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P+  TF  ++   A + D + AF  L L++ +G       Y  LI    +  +V      
Sbjct: 529 PSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSV 588

Query: 144 -DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M    + P+   +  ++     SG + +AF+   ++      +  D      L++AC
Sbjct: 589 LDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKES--GLKLDVYIYETLLRAC 646

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPD 260
             +G++  A  V + +    I     +Y I I+  ++ GD WE A  +   M + G+ P+
Sbjct: 647 CKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWE-AADLLKQMKEDGIPPN 705

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               ++ I+    AG ++ A  ++QE  + G+   + ++++L+   +      +AL+ +E
Sbjct: 706 IHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDRALKCFE 765

Query: 321 HMKSIKLKPTVSTMNALITAL 341
            MKS  LKP  +  + L+T+L
Sbjct: 766 EMKSAGLKPDEAAYHCLVTSL 786



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/341 (18%), Positives = 146/341 (42%), Gaps = 10/341 (2%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +P P+   F +++   A   D   A      ++  G++ +  ++T+L+   A +G +
Sbjct: 243 FERIPKPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAGDM 302

Query: 144 DAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                       E ++   V ++ LI+  G++     A ++  E   ++  ++   I   
Sbjct: 303 RGALSCVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLN--GIIYS 360

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++ A   +G +DRA E+ + + +  I    +VY   ++  +   D +    V++ + + 
Sbjct: 361 NIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFERLKEC 420

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  P  +    LI+     GKV  A  I +E ++ GI     +YS L+    +  ++  A
Sbjct: 421 GFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDFANA 480

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             ++E M    L+P  +  N L+ A C    + + + +   M+   + P+  T+  ++  
Sbjct: 481 FSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPIIEG 540

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
                D++     L   +  G  P ++ +  +I    R+++
Sbjct: 541 FAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQ 581



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 120/267 (44%), Gaps = 3/267 (1%)

Query: 143 VDAMFENV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           V + FE + KP R  F  ++    + G    A      M A    ++P+     +L+ A 
Sbjct: 239 VVSAFERIPKPSRREFGLMVVYYAKRGDKHHARATFENMRA--RGIEPNAFVFTSLVHAY 296

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A AG +  A    + +    I+ T   Y+I I+   +T D + A +++ +   K    + 
Sbjct: 297 AVAGDMRGALSCVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADNLFKEAKTKLDNLNG 356

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  S +I     +G ++ A E+++E +  GI   I  Y S+M   +  ++ +K L ++E 
Sbjct: 357 IIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVVQDEKKCLIVFER 416

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +K    KPT+ +   LI       ++PK + +  +M+S G+  N  TYS+L+       D
Sbjct: 417 LKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHD 476

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
                 +     + G+ P+  ++  ++
Sbjct: 477 FANAFSIFEDMIKSGLQPDRAIYNLLV 503


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 156/366 (42%), Gaps = 46/366 (12%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           P  +TF  LM         E A +V   + E G          LI    K G+V+     
Sbjct: 228 PDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGY 287

Query: 145 ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               + +  +PD+V +N  +    Q+G V  A  V+  M  E H  DPD  T   ++   
Sbjct: 288 IQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGH--DPDVFTYNTVINCL 345

Query: 202 ANAGQVDRAR--------------------------------EVYKMIHKYNIKG-TPEV 228
           +  G++D A+                                E   +  +  +KG +P+V
Sbjct: 346 SKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDV 405

Query: 229 YT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           YT  I IN   + GD      ++++M   G  PDEV  + LID     GK+  A ++L+E
Sbjct: 406 YTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKE 465

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            ++ G     ++Y++++ A       ++A E+++ M +  +  +  T N LI  LC   +
Sbjct: 466 MESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKR 525

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +    E++  M   GL P+ ITY+ +L    ++ D++    +L     +G   ++V +  
Sbjct: 526 IDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGT 585

Query: 407 II-GMC 411
           +I G+C
Sbjct: 586 LINGLC 591



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/424 (23%), Positives = 178/424 (41%), Gaps = 21/424 (4%)

Query: 18  HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           H   A  V   + SY RL    R  + +DL+ +      +  D   +    NV      +
Sbjct: 120 HEAGAGVVRSFVESYARL---RRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRM 176

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           K     +  + +    P + T N L+     +     A  +L  +    +  D   +TTL
Sbjct: 177 KLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTL 236

Query: 134 ITTCAKSGKVDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV- 184
           +    + G ++A        M     P RV  N LI    + G V+   D L  +  E+ 
Sbjct: 237 MQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVE---DALGYIQKEIA 293

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
              +PD +T    +      G V  A +V  ++ +         Y   INC S+ G+ + 
Sbjct: 294 DGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDE 353

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  + + M  +G +PD    + LI       ++E A ++ +E   +G+S  + +++ L+ 
Sbjct: 354 AKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILIN 413

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
           A     +    + L+E MKS    P   T N LI  LC   +L   +++L +M+S G   
Sbjct: 414 ALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPR 473

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLN 422
           +T+TY+ ++ A  ++  +E    +  Q    G+  + V F  +I G+C ++R + A  L 
Sbjct: 474 STVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELI 533

Query: 423 EHVL 426
           E ++
Sbjct: 534 EQMV 537



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 120/270 (44%), Gaps = 3/270 (1%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           E+  P R V+  +I   G +GA D    ++ EM  E H        + + +++ A   + 
Sbjct: 83  EDFAPSRAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAG--VVRSFVESYARLRRF 140

Query: 208 DRARE-VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           D A + V   ++ + ++    VY   +N  ++    +   SVY++MT +G+ PD V L+ 
Sbjct: 141 DDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNT 200

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LI     A +V  A  +L+E  +  ++    ++++LM       + + AL +   M    
Sbjct: 201 LIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETG 260

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
             PT  T+N LI   C   ++   +  +    + G  P+ +TY+  +    +   V   L
Sbjct: 261 CSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHAL 320

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
            ++    ++G  P++  +  +I   S+  E
Sbjct: 321 KVMDLMLQEGHDPDVFTYNTVINCLSKNGE 350



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 119/283 (42%), Gaps = 43/283 (15%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G++   +DLL++ME  G       Y+     +CK Q  I+EA   F  
Sbjct: 442 TYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCK-QMRIEEAEEVFDQ 500

Query: 87  VPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +    +S    TFN L+     +K  + A                   T LI    K G 
Sbjct: 501 MDAHGISRSAVTFNTLIDGLCKAKRIDDA-------------------TELIEQMVKEG- 540

Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  ++P  + +N+++T   + G + +A D+L  M A    +D   +T G L+    
Sbjct: 541 -------LQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDV--VTYGTLINGLC 591

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AG+   A ++ + +    I+ TP+ Y   I    +  +   A S++ +MT+ G  PD  
Sbjct: 592 KAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDA- 650

Query: 263 FLSALIDFAG---HAGKVEAAFEILQEAKNQGISVGIISYSSL 302
            L+  I F G     G ++ AF+ L E  N+G      S+  L
Sbjct: 651 -LTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRML 692


>gi|168004269|ref|XP_001754834.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693938|gb|EDQ80288.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 504

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 157/342 (45%), Gaps = 11/342 (3%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAMFE 148
           ++T+N  + V   S     A    R +Q+ G+      +T +I    K   S K D +F 
Sbjct: 162 IATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMINIYGKAYYSDKADDLFR 221

Query: 149 NVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           +++     P+   + AL+ A  + G   RA ++ AE+ +      PD  T  AL++A + 
Sbjct: 222 SMRKALCPPNLYTYTALMNAHAREGNCVRAEEIFAELQSV--GFIPDVYTYNALLEAYSR 279

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
                 A+EV++ + +  ++     Y I I+   + G    A +VYD M + G  P    
Sbjct: 280 GEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLTADAQAVYDSMKEAGFKPTMKS 339

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
              L+     AGKV  A  +++E +N G+      ++SL+ A  N+    +   L E M 
Sbjct: 340 HMLLLSSYAKAGKVTEAERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMV 399

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           S   KP +ST+N LI A   G  + K  EV + ++S GL P+ ++++ L+ A  ++    
Sbjct: 400 SSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLESKGLTPDVMSWTSLMGAYAQRKLFR 459

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
             + +  +  + G IP+    K  +  C R  E+ + + + +
Sbjct: 460 KCVSIFQKMVKAGCIPDRATAKVFLSSC-RSPEQVKEVTDMI 500



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 163/365 (44%), Gaps = 36/365 (9%)

Query: 17  KHANYAHDVSEQL-----HSYNRLI----RQGRISECIDLLEDMERKGLLD-------MD 60
           K +NY+    E +      +YN  +    + GR+S+  D   DM+++G+L        M 
Sbjct: 145 KESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGILPAVNTFTIMI 204

Query: 61  KVYHARFFNVCKSQKAIKEAFRFFK--LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            +Y   ++    S KA  + FR  +  L P P L T+  LM+  A   +   A ++   +
Sbjct: 205 NIYGKAYY----SDKA-DDLFRSMRKALCP-PNLYTYTALMNAHAREGNCVRAEEIFAEL 258

Query: 119 QEAGLKADCKLYTTLITTCAKSGK-------VDAMFE-NVKPDRVVFNALITACGQSGAV 170
           Q  G   D   Y  L+   ++            AM E  V+PD+V +N LI A G++G  
Sbjct: 259 QSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGRAGLT 318

Query: 171 DRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
             A  V   M  A   P    H+    L+ + A AG+V  A  + + I    +K    ++
Sbjct: 319 ADAQAVYDSMKEAGFKPTMKSHML---LLSSYAKAGKVTEAERLVREIENSGVKPDTFMF 375

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
              ++    +G  +   S+ + M      PD   L+ LI+     G +E A E+    ++
Sbjct: 376 NSLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLNTLINAYAQGGYIEKAEEVFNSLES 435

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           +G++  ++S++SLMGA +  K ++K + +++ M      P  +T    +++    +Q+ +
Sbjct: 436 KGLTPDVMSWTSLMGAYAQRKLFRKCVSIFQKMVKAGCIPDRATAKVFLSSCRSPEQVKE 495

Query: 350 TMEVL 354
             +++
Sbjct: 496 VTDMI 500



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 158/391 (40%), Gaps = 42/391 (10%)

Query: 151 KPDRVVFNALITACGQSGA---VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           KPD   FN LI A G+S      ++ F ++ +         P   +   L+ A +   Q+
Sbjct: 80  KPDVGCFNMLIDAYGKSKQWREAEKTFHLMKDFQCL-----PTETSFNVLLAAYSRGVQL 134

Query: 208 DRAREVYKMIHKYNIK-GTPE--------VYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           ++A +++  + + N   GT E         Y   +    ++G    A   + DM K+G++
Sbjct: 135 EKAEKLFHEMKESNYSPGTVEWMIFSGIATYNTYLEVLGKSGRLSQAEDTFRDMQKQGIL 194

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P     + +I+  G A   + A ++ +  +       + +Y++LM A +   N  +A E+
Sbjct: 195 PAVNTFTIMINIYGKAYYSDKADDLFRSMRKALCPPNLYTYTALMNAHAREGNCVRAEEI 254

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           +  ++S+   P V T NAL+ A   G+      EV   M   G+ P+ ++Y+IL+ A  R
Sbjct: 255 FAELQSVGFIPDVYTYNALLEAYSRGEHPTGAKEVFQAMVEAGVRPDQVSYNILIDAFGR 314

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENK 438
                    +    KE G  P +     ++      Y KA  + E               
Sbjct: 315 AGLTADAQAVYDSMKEAGFKPTMKSHMLLLS----SYAKAGKVTE--------------- 355

Query: 439 WTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLC 498
               A  + RE   +G  P   + + +L         D  E L+E++  S      S L 
Sbjct: 356 ----AERLVREIENSGVKPDTFMFNSLLSAYGNSGRIDEMESLLESMVSSVAKPDISTLN 411

Query: 499 SLIDGF--GEYDPRAFSLLEEAASFGIVPCV 527
           +LI+ +  G Y  +A  +     S G+ P V
Sbjct: 412 TLINAYAQGGYIEKAEEVFNSLESKGLTPDV 442


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 159/347 (45%), Gaps = 27/347 (7%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P  ST++ ++    ++   E AFQ+ + ++  G+  D  +YTTLI +  K+G ++     
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNW 279

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F+ ++     P+ V + ALI A  +S  V +A +V   M ++     P+ +T  AL+   
Sbjct: 280 FDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSK--GCTPNIVTYTALIDGL 337

Query: 202 ANAGQVDRAREVYKMIHKYNIK---------------GTPEVYTIA--INCCSQTGDWEF 244
             AG++++A ++YK++ K N++                 P V+T    ++   +    + 
Sbjct: 338 CKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKE 397

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  +   M+ +G  P+ V   ALID    AGK++ A E+       G    + +YSSL+ 
Sbjct: 398 ARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLID 457

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                K    AL++   M      P V     +I  LC   +  +  +++  M+  G  P
Sbjct: 458 RLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNP 517

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           N +TY+ ++    +   VE  L LL Q    G  PN V ++ +I  C
Sbjct: 518 NVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHC 564



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/383 (22%), Positives = 160/383 (41%), Gaps = 28/383 (7%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           G+  +  +++ +M  KG +     Y      +C + K +++AF+ F+ +      P +  
Sbjct: 201 GKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASK-VEKAFQLFQEMKRNGIAPDVYV 259

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------ 148
           +  L+     +   E A      ++  G   +   YT LI    KS KV    E      
Sbjct: 260 YTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMML 319

Query: 149 --NVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVD------------PDH 191
                P+ V + ALI    ++G +++A   + ++ + N E+  VD            P+ 
Sbjct: 320 SKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNV 379

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
            T GAL+     A QV  AR++ K +     +    VY   I+ C + G  + A  V+  
Sbjct: 380 FTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTT 439

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M + G  P+    S+LID      +++ A ++L +      +  ++ Y+ ++        
Sbjct: 440 MLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGK 499

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +A +L   M+     P V T  A+I       ++ K +E+L  M S G  PN +TY +
Sbjct: 500 TDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRV 559

Query: 372 LLVACERKDDVEVGLMLLSQAKE 394
           L+  C     ++    LL + K+
Sbjct: 560 LINHCCSTGLLDEAHKLLEEMKQ 582



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 160/366 (43%), Gaps = 37/366 (10%)

Query: 69  NVCKSQKAIKEAFRFFK---LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           ++CKS K  +EA    +    VP+  L T  M+  +C +S   E A   L  ++ +    
Sbjct: 19  SLCKSGKW-REALSLLEKEEFVPDTVLYT-KMISGLCEASLFEE-AMDFLTRMRASSCLP 75

Query: 126 DCKLYTTLITTCAKSGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVL 177
           +   Y  L+  C    K+          + E   P   +FN+L+ A  +SG    A+ +L
Sbjct: 76  NVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLL 135

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQ-----VDRAREVYK-------MIHKYNIKGT 225
            +M        P ++    L+    ++ +     +D A + Y        +++K NI   
Sbjct: 136 KKMVQ--CGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNF 193

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
                    C    G +E A +V  +M  KG IPD    S +I +  +A KVE AF++ Q
Sbjct: 194 SR-------CLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQ 246

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           E K  GI+  +  Y++L+ +   A   ++A   ++ M+     P V T  ALI A     
Sbjct: 247 EMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSR 306

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV-IPNLVM- 403
           ++ K  EV   M S G  PN +TY+ L+    +   +E    +    K++ V IP++ M 
Sbjct: 307 KVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMH 366

Query: 404 FKCIIG 409
           F+ + G
Sbjct: 367 FRVVDG 372



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 112/542 (20%), Positives = 219/542 (40%), Gaps = 56/542 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           + L + G+  E + LLE  E       D V + +  +        +EA  F   +     
Sbjct: 18  HSLCKSGKWREALSLLEKEE----FVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSC 73

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T+ +L+  C + +      ++L ++   G     +++ +L+    +SG     ++
Sbjct: 74  LPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYK 133

Query: 149 NVK--------PDRVVFNALITA-CGQSGAVDRAFDVLAEMNAEV--HPVDPDHITIGAL 197
            +K        P  VV+N LI   C          D+  +   E+    V  + + I   
Sbjct: 134 LLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNF 193

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            +     G+ ++A  V + +           Y+  I         E A  ++ +M + G+
Sbjct: 194 SRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGI 253

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD    + LID    AG +E A     E +  G +  +++Y++L+ A   ++   KA E
Sbjct: 254 APDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANE 313

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-------------- 363
           +YE M S    P + T  ALI  LC   ++ K  ++   MK   +               
Sbjct: 314 VYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGA 373

Query: 364 ---PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
              PN  TY  L+    +   V+    LL     +G  PN V++  +I  C +  + ++A
Sbjct: 374 SNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEA 433

Query: 419 RTL---------NEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGC 468
           + +         + +V +++S   ++ ++K   LAL V  + +     P V + ++++  
Sbjct: 434 QEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDG 493

Query: 469 LQLPYNADIRERL---VENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGI 523
           L      D   +L   +E  G + + +  +   ++IDGFG+     +   LL++ +S G 
Sbjct: 494 LCKVGKTDEAYKLMVMMEEKGCNPNVVTYT---AMIDGFGKSGRVEKCLELLQQMSSKGC 550

Query: 524 VP 525
            P
Sbjct: 551 AP 552



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/339 (22%), Positives = 138/339 (40%), Gaps = 58/339 (17%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L +  ++ E  DLL+ M  +G      VY A     CK+ K + EA   F  +     +P
Sbjct: 389 LCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGK-LDEAQEVFTTMLECGYDP 447

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            + T++ L+      K  + A +VL  + E     +  +YT +I    K GK D  ++  
Sbjct: 448 NVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLM 507

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                    P+ V + A+I   G+SG V++  ++L +M+++     P+ +T   L+  C 
Sbjct: 508 VMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSK--GCAPNFVTYRVLINHCC 565

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY--DDMTKKGVIPD 260
           + G +D A ++ + + +         Y   I    +  + EF  S+Y   ++++   +P 
Sbjct: 566 STGLLDEAHKLLEEMKQTYWPRHVAGYRKVI----EGFNREFIASLYLSFEISENDSVPV 621

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQE--------AKNQGISVGIISYSSLMGACSNA--- 309
                 LID    AG++E A E+ +E        A NQ I + +I   SL      A   
Sbjct: 622 APVYRVLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIHITLIENLSLAHKADKAFEL 681

Query: 310 --------------------------KNWQKALELYEHM 322
                                       W++AL+L + +
Sbjct: 682 YADMISRGSIPELSILVHLIKGLLRVNRWEEALQLLDSI 720


>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Brachypodium distachyon]
          Length = 628

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 176/412 (42%), Gaps = 21/412 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPN---- 89
           L+ +G+  +  +L  +M  +G    D V Y A     CK  +    A R    + +    
Sbjct: 200 LMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQ-DSAIRLLNEMKDNGMQ 258

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           PT   + ML+++     +  GA  +   ++    + D   YT LI    K+G+ D  +  
Sbjct: 259 PTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNF 318

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E  +PD VV N +I   G++G +D A  +  EM        P  +T   ++KA 
Sbjct: 319 FHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMG--TLQCIPSVVTYNTIIKAL 376

Query: 202 ANA-GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             +  ++      ++ +    I  +P  Y+I I+   +T   E A  + ++M +KG  P 
Sbjct: 377 FESKSRISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPC 436

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
                +LID  G A + + A E+ QE K    S     Y+ ++     A     A+ L++
Sbjct: 437 PAAYCSLIDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIKHLGKAGRLDDAVNLFD 496

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M  +   P V   NAL++ L     L + +  +  M+  G  P+  +Y+I+L    +  
Sbjct: 497 EMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTG 556

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR---YEKARTLNE-HVLSF 428
                + +LS  K+  + P+ V +  ++G  S      E A+ + E +VL F
Sbjct: 557 GPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGF 608



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/401 (20%), Positives = 161/401 (40%), Gaps = 53/401 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRF 83
           +Y+ LI    + GR    I LL +M+  G+    K+Y    A FF +     A+      
Sbjct: 228 TYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEM 287

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 P + T+  L+     +   + A+     ++  G + D  +   +I    K+G++
Sbjct: 288 RHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRL 347

Query: 144 D--------------------------AMFEN------------------VKPDRVVFNA 159
           D                          A+FE+                  + P    ++ 
Sbjct: 348 DDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGISPSPFTYSI 407

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
           LI    ++   ++A  +L EM+ +  P  P      +L+ A   A + D A E+++ + +
Sbjct: 408 LIDGFCKTNRTEKAMMLLEEMDEKGFP--PCPAAYCSLIDALGKAKRYDIAHELFQELKE 465

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
                +  VY + I    + G  + A +++D+M K G  P+    +AL+     AG ++ 
Sbjct: 466 NCGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDE 525

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A   ++  +  G    I SY+ ++   +      +A+E+  +MK   +KP   + N ++ 
Sbjct: 526 ALTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLG 585

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           A+       +  +++ +M  LG   + ITYS +L A  + D
Sbjct: 586 AMSHAGLFEEAAKLMKEMNVLGFEYDLITYSSILEAIGKVD 626



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 70/132 (53%), Gaps = 2/132 (1%)

Query: 281 FEILQE-AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           ++++QE  +N    V  +  S ++    NAK   KA+ ++  +K  K +PT    N++I 
Sbjct: 139 WKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKVRKCQPTAQAYNSMII 198

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
            L    Q  K  E+ ++M + G C P+T+TYS L+ A  +    +  + LL++ K++G+ 
Sbjct: 199 MLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQ 258

Query: 399 PNLVMFKCIIGM 410
           P   ++  +I +
Sbjct: 259 PTAKIYTMLIAL 270



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 149/371 (40%), Gaps = 29/371 (7%)

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
           AE   EV  +  DH  +  +MK   + G   + +       K N +     Y   I C  
Sbjct: 73  AEKALEVLMLKVDHWLVREVMKT--DVGVNVKMQFFRWAAKKRNYEHDTSTYMALIRCLE 130

Query: 238 QTGDWEFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
               +     +  +M +  V +   + LS +I   G+A  +  A  I  + K +      
Sbjct: 131 VVEQYGEMWKMIQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKVRKCQPTA 190

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLS 355
            +Y+S++    +   ++K  ELY  M +     P   T +ALI+A C   +    + +L+
Sbjct: 191 QAYNSMIIMLMHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLN 250

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-- 413
           +MK  G+ P    Y++L+    + ++V   L L  + +     P++  +  +I    +  
Sbjct: 251 EMKDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLGKAG 310

Query: 414 RYEKARTLNEHVLSFNSGRPQ---IENKWTSL--------ALMVYREAIVAGTIPTVEVV 462
           R+++A     H +     RP    I N    L        A+ ++ E      IP+V   
Sbjct: 311 RFDEAYNFF-HEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVVTY 369

Query: 463 SKVLGCL-----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLL 515
           + ++  L     ++   +   ER+ +  G+S      S    LIDGF + +   +A  LL
Sbjct: 370 NTIIKALFESKSRISEISSWFERM-KGSGISPSPFTYS---ILIDGFCKTNRTEKAMMLL 425

Query: 516 EEAASFGIVPC 526
           EE    G  PC
Sbjct: 426 EEMDEKGFPPC 436


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 108/476 (22%), Positives = 205/476 (43%), Gaps = 52/476 (10%)

Query: 40  RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RISE + L++ M   G     +  + + H  F +  K+ +A+    R       P L T+
Sbjct: 166 RISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLH-NKASEAVALIDRMVARGCQPDLFTY 224

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
             +++      D + A  +L+ +++  ++A+  +Y T+I    K   +D  F+       
Sbjct: 225 GTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMET 284

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             +KPD   +N+LI+     G    A  +L++M      ++P+ +T  +L+ A A  G++
Sbjct: 285 KGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIE--RKINPNVVTFNSLIDAFAKEGKL 342

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             A +++  + + +I      Y   IN        + A  ++  M  K  +PD V  + L
Sbjct: 343 IEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 402

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I     A +VE   E+ +E   +G+    ++Y++L+     A +   A ++++ M S  +
Sbjct: 403 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 462

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P + T + L+  LC   +L K + V   ++   + PN  TY+I++    +   VE G  
Sbjct: 463 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWD 522

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 446
           L       GV PN++++  +I G C +  ++                         A  +
Sbjct: 523 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEE------------------------ADAL 558

Query: 447 YREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE-NLGVSADALKRSNLCSLI 501
           +RE    GT+P         GC    YN  IR RL + +   SA+ +K    C  +
Sbjct: 559 FREMKEDGTLPDS-------GC----YNTLIRARLRDGDKAASAELIKEMRSCGFV 603



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 173/403 (42%), Gaps = 17/403 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPTLS 93
           +  +    I L E M+  G+      Y       C+  +   A+    +  KL   P + 
Sbjct: 93  KMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIV 152

Query: 94  TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDA 145
           T + L++  C   + SE    V ++V E G K D   + TLI       K       +D 
Sbjct: 153 TLSSLLNGYCHGKRISEAVALVDQMV-EMGYKPDTVTFNTLIHGLFLHNKASEAVALIDR 211

Query: 146 MF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           M     +PD   +  ++    + G +D A  +L +M  E   ++ + +    ++      
Sbjct: 212 MVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM--EKGKIEANVVIYNTIIDGLCKY 269

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
             +D A +++  +    IK     Y   I+C    G W  A  +  DM ++ + P+ V  
Sbjct: 270 KHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTF 329

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++LID     GK+  A ++  E   + I   I++Y+SL+          +A +++  M S
Sbjct: 330 NSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVS 389

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
               P V T N LI   C   ++ + ME+  +M   GL  NT+TY+ L+    +  D ++
Sbjct: 390 KDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 449

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
              +  +   DGV P+++ +  ++ G+C   + EKA  + E++
Sbjct: 450 AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 492



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 168/398 (42%), Gaps = 50/398 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G I   + LL+ ME+  +     +Y+     +CK  K + +AF  F  +     
Sbjct: 229 NGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCK-YKHMDDAFDLFNKMETKGI 287

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P + T+N L+S   +      A ++L  + E  +  +   + +LI   AK GK+     
Sbjct: 288 KPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEK 347

Query: 144 --DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             D M + ++ P+ V +N+LI        +D A  +   M ++     PD +T   L+K 
Sbjct: 348 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK--DCLPDVVTYNTLIKG 405

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              A +V+   E+++ + +  + G    Y   I    Q GD + A  ++  M   GV PD
Sbjct: 406 FCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 465

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  S L+D     GK+E                                   KAL ++E
Sbjct: 466 IITYSILLDGLCKYGKLE-----------------------------------KALVVFE 490

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           +++  K++P + T N +I  +C   ++    ++   +   G+ PN I Y+ ++    RK 
Sbjct: 491 YLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG 550

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
             E    L  + KEDG +P+   +  +I    R  +KA
Sbjct: 551 LKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKA 588



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 154/365 (42%), Gaps = 30/365 (8%)

Query: 17  KHANYAHDVSEQLHS---------YNRLI----RQGRISECIDLLEDM-ERKGLLDMDKV 62
           KH + A D+  ++ +         YN LI      GR S+   LL DM ERK  ++ + V
Sbjct: 270 KHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERK--INPNVV 327

Query: 63  YHARFFNVCKSQKAIKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
                 +    +  + EA + F    +   +P + T+N L++        + A Q+  L+
Sbjct: 328 TFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLM 387

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP--------DRVVFNALITACGQSGAV 170
                  D   Y TLI    K+ +V+   E  +         + V +N LI    Q+G  
Sbjct: 388 VSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDC 447

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
           D A  +  +M ++  P  PD IT   L+      G++++A  V++ + K  ++     Y 
Sbjct: 448 DMAQKIFKKMVSDGVP--PDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYN 505

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
           I I    + G  E    ++  ++ KGV P+ +  + +I      G  E A  + +E K  
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 565

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G       Y++L+ A     +   + EL + M+S       ST++ +I  L DG      
Sbjct: 566 GTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSY 625

Query: 351 MEVLS 355
           +E+LS
Sbjct: 626 LEMLS 630



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 116/272 (42%), Gaps = 13/272 (4%)

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D A  +  EM  +  P  P  I    L+ A A   + D    + + +    I      Y
Sbjct: 62  LDDAVALFGEM-VKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTY 119

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           +I +NC  +      A +V   M K G  PD V LS+L++   H  ++  A  ++ +   
Sbjct: 120 SILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVE 179

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            G     +++++L+          +A+ L + M +   +P + T   ++  LC    +  
Sbjct: 180 MGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL 239

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            + +L  M+   +  N + Y+ ++    +   ++    L ++ +  G+ P++  +  +I 
Sbjct: 240 ALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLIS 299

Query: 410 -MCSR-RYEKA---------RTLNEHVLSFNS 430
            +C+  R+  A         R +N +V++FNS
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFNS 331


>gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Glycine max]
          Length = 918

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 176/379 (46%), Gaps = 15/379 (3%)

Query: 47  LLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           L+ +ME +G+     +YH     +  +   +K +    R  +   +P++ ++  L+++  
Sbjct: 401 LVREMEVQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFSPSVISYGCLINLYT 460

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAMFEN-----VKPDRV 155
                  A Q+ ++++ +G+K + K Y+ LI    K        ++FE+     +KPD V
Sbjct: 461 KIGKVSKALQISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVV 520

Query: 156 VFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           ++N +ITA CG S  +DRA  ++ +M  E +   P   T   ++   A AG++ RA E++
Sbjct: 521 LYNNIITAFCGMSN-MDRAICMVKQMQKERY--RPTTRTFLPIIHGFARAGEMRRALEIF 577

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
            M+ +     T   Y   I    +      A ++ D M   GV P+E   + L+      
Sbjct: 578 DMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGYASL 637

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G  E AF+     +N+G+ + + +Y +L+ +C  +   Q AL + + M +  +       
Sbjct: 638 GDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVY 697

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N LI        + +  +++  M+  G+ P+  TY+  + AC +  D++    ++ + + 
Sbjct: 698 NILIDGWARRGDVWEAADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATEIIQEMEA 757

Query: 395 DGVIPNLVMFKCIIGMCSR 413
            G+ PNL  +  +I   +R
Sbjct: 758 FGIKPNLKTYTTLINGWAR 776



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 162/365 (44%), Gaps = 41/365 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P+   ++ L+   A  +D E A   +R ++E G++     Y+ ++   AK GK DA    
Sbjct: 307 PSSHVYSSLIHAYAVGRDMEEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGKADAADHW 366

Query: 147 FENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAE--VHPVD----------- 188
           F+  K      + V + ++I A  Q+  +DRA  ++ EM  +    P+D           
Sbjct: 367 FKEAKEKLPSLNAVTYGSIIYAHCQTCNMDRAEALVREMEVQGIDAPIDIYHTMMDGYTM 426

Query: 189 --------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                               P  I+ G L+      G+V +A ++ KM+    IK   + 
Sbjct: 427 IGNEEKCLIVFDRLKECGFSPSVISYGCLINLYTKIGKVSKALQISKMMKMSGIKHNMKT 486

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y++ IN   +  DW  A SV++D TK G+ PD V  + +I        ++ A  ++++ +
Sbjct: 487 YSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMSNMDRAICMVKQMQ 546

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +       ++  ++   + A   ++ALE+++ M+     PTV T NALI  L +  ++ 
Sbjct: 547 KERYRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLVEKRKMA 606

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           K + +L  M   G+ PN  TY+ L+       D E      S  + +G+  ++  ++ ++
Sbjct: 607 KAVAILDQMNVAGVGPNEHTYTTLMQGYASLGDTEKAFQYFSVLRNEGLEIDVYTYEALL 666

Query: 409 GMCSR 413
             C +
Sbjct: 667 KSCCK 671



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 139/296 (46%), Gaps = 26/296 (8%)

Query: 55  GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114
           G+ +MD+        +C  ++  KE +R       PT  TF  ++   A + +   A ++
Sbjct: 531 GMSNMDRA-------ICMVKQMQKERYR-------PTTRTFLPIIHGFARAGEMRRALEI 576

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAM-FENVKPDRVVFNALITACGQ 166
             +++ +G       Y  LI    +  K       +D M    V P+   +  L+     
Sbjct: 577 FDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGYAS 636

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
            G  ++AF   + +  E   ++ D  T  AL+K+C  +G++  A  V K +   NI    
Sbjct: 637 LGDTEKAFQYFSVLRNE--GLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNT 694

Query: 227 EVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
            VY I I+  ++ GD WE A  +   M K+GV+PD    ++ ++    AG ++ A EI+Q
Sbjct: 695 FVYNILIDGWARRGDVWE-AADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATEIIQ 753

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           E +  GI   + +Y++L+   + A   +KAL  +E MK  +LKP  +  + L+T+L
Sbjct: 754 EMEAFGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAELKPDKAAYHCLMTSL 809



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/357 (22%), Positives = 159/357 (44%), Gaps = 19/357 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------L 86
           N   + G++S+ + + + M+  G+    K Y +   N     K    AF  F+      L
Sbjct: 457 NLYTKIGKVSKALQISKMMKMSGIKHNMKTY-SMLINGFLKLKDWANAFSVFEDFTKDGL 515

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
            P+  L   N++ + C  S + + A  +++ +Q+   +   + +  +I   A++G++   
Sbjct: 516 KPDVVLYN-NIITAFCGMS-NMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAGEMRRA 573

Query: 147 FE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            E           P    +NALI    +   + +A  +L +MN  V  V P+  T   LM
Sbjct: 574 LEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVAILDQMN--VAGVGPNEHTYTTLM 631

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           +  A+ G  ++A + + ++    ++     Y   +  C ++G  + A +V  +M+ K + 
Sbjct: 632 QGYASLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKNIP 691

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
            +    + LID     G V  A +++Q+ + +G+   I +Y+S + AC  A + QKA E+
Sbjct: 692 RNTFVYNILIDGWARRGDVWEAADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKATEI 751

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            + M++  +KP + T   LI          K +    +MK   L P+   Y  L+ +
Sbjct: 752 IQEMEAFGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAELKPDKAAYHCLMTS 808



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 101/255 (39%), Gaps = 35/255 (13%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P     G ++K  A  G +  AR+ ++ +    I+ +  VY+  I+  +   D E A   
Sbjct: 272 PARKEYGLMVKYYARRGDMHHARQTFESMQARGIEPSSHVYSSLIHAYAVGRDMEEALHC 331

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS------- 301
              M ++G+    V  S ++      GK +AA    +EAK +  S+  ++Y S       
Sbjct: 332 VRKMKEEGIEMTIVTYSIIVGGFAKMGKADAADHWFKEAKEKLPSLNAVTYGSIIYAHCQ 391

Query: 302 ----------------------------LMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
                                       +M   +   N +K L +++ +K     P+V +
Sbjct: 392 TCNMDRAEALVREMEVQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRLKECGFSPSVIS 451

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
              LI       ++ K +++   MK  G+  N  TYS+L+    +  D      +     
Sbjct: 452 YGCLINLYTKIGKVSKALQISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFT 511

Query: 394 EDGVIPNLVMFKCII 408
           +DG+ P++V++  II
Sbjct: 512 KDGLKPDVVLYNNII 526



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/346 (17%), Positives = 127/346 (36%), Gaps = 45/346 (13%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +  P    + +++   A   D   A Q    +Q  G++    +Y++LI   A    +
Sbjct: 266 FERIKKPARKEYGLMVKYYARRGDMHHARQTFESMQARGIEPSSHVYSSLIHAYAVGRDM 325

Query: 144 DAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +           E ++   V ++ ++    + G  D A     E   ++  ++   +T G
Sbjct: 326 EEALHCVRKMKEEGIEMTIVTYSIIVGGFAKMGKADAADHWFKEAKEKLPSLNA--VTYG 383

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +++ A      +DRA  + + +    I    ++Y   ++  +  G+ E    V+D +   
Sbjct: 384 SIIYAHCQTCNMDRAEALVREMEVQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFDRL--- 440

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
                                           K  G S  +ISY  L+   +      KA
Sbjct: 441 --------------------------------KECGFSPSVISYGCLINLYTKIGKVSKA 468

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           L++ + MK   +K  + T + LI              V  D    GL P+ + Y+ ++ A
Sbjct: 469 LQISKMMKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITA 528

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
                +++  + ++ Q +++   P    F  II   +R  E  R L
Sbjct: 529 FCGMSNMDRAICMVKQMQKERYRPTTRTFLPIIHGFARAGEMRRAL 574


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 148/333 (44%), Gaps = 15/333 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P+L T+N L++   +S   E A +VL +++   +  D   Y T+I    + GK    FE 
Sbjct: 165 PSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEK 224

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMK 199
                  NV PD++ +  LI AC   G  D    +  EM+     + P    + IG L  
Sbjct: 225 FRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGL-- 282

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            C     V+      KMI K   K    +YT  I+  ++ G+   A  +++ M K+G+ P
Sbjct: 283 -CKEGKCVEGYAVFEKMIQK-GCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEP 340

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V    +++    +G+++ A E L+  +  G++V  + YSSL+     A    +A +L+
Sbjct: 341 DVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLF 400

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E M      P     NALI AL    +  + +     M+  G      TY+I++    R+
Sbjct: 401 EEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFRE 460

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCI-IGMC 411
              E  L +     + G+ P    F+ + IG+C
Sbjct: 461 HKNEEALKMWDMMIDKGITPTAAAFRALSIGLC 493



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 145/320 (45%), Gaps = 12/320 (3%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           +  V K+QKA  E FR  +L    P   T+  L+  C +  D +    +   + E GL+ 
Sbjct: 212 YCQVGKTQKAF-EKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEI 270

Query: 126 DCKLYTTLITTCAKSGKV---DAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVL 177
               Y+ +I    K GK     A+FE +     K +  ++ ALI +  + G +  A  + 
Sbjct: 271 PPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLF 330

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
             M  E   ++PD +T G ++     +G++D A E  +      +     +Y+  I+   
Sbjct: 331 ERMKKE--GLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLG 388

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           + G    A  ++++M KKG  PD    +ALID     GK + A    +  +++G    + 
Sbjct: 389 KAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVY 448

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +Y+ ++         ++AL++++ M    + PT +   AL   LC   ++ +  ++L ++
Sbjct: 449 TYTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLCLSGKVARACKLLDEL 508

Query: 358 KSLGLCPNTITYSILLVACE 377
             +G+ P T    +L V C+
Sbjct: 509 APMGVIPETAFEDMLNVLCK 528



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 1/186 (0%)

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           + Y  +I+  +  GD +   SV+      G + +    ++LI   G  G VE    + + 
Sbjct: 98  QCYVSSIDVLAINGDLDNVKSVFCKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRG 157

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            K  G+   + +Y+ L+    N+   + A  + E M++ K+ P V T N +I   C   +
Sbjct: 158 MKENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGK 217

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV-IPNLVMFK 405
             K  E   DM+   + P+ ITY  L+ AC  + D ++ L L  +  E+G+ IP      
Sbjct: 218 TQKAFEKFRDMELRNVAPDKITYMTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSL 277

Query: 406 CIIGMC 411
            I G+C
Sbjct: 278 VIGGLC 283


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 163/359 (45%), Gaps = 21/359 (5%)

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPN--------PTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           +++N+  ++   + + R  KL+ N        PT  +FN L++    S++ +  F++ + 
Sbjct: 224 QYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKT 283

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDA---MFEN-----VKPDRVVFNALITACGQSGA 169
           ++E  +  D   Y+ LI    K G++D    +F+      ++P+ + F ALI    +S  
Sbjct: 284 MEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQYRSRR 343

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D A +   +M      V PD +    L+      G V++AR++   +    +K     Y
Sbjct: 344 MDSAMNTYHQM--LTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITY 401

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           T  I+   + GD E A  +   M ++GV+ D V  +ALI      G+V  A   L+E   
Sbjct: 402 TTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVE 461

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            G+     +Y+ ++       N +   +L + M+    KP V T N L+  LC   Q+  
Sbjct: 462 AGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKN 521

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              +L  M +LG+ P+ ITY+ILL    +    E    LL    E G+I +   +  ++
Sbjct: 522 ANMLLEAMLNLGVTPDDITYNILLEGHCKNGKAED---LLKLRNEKGLIVDYAYYTSLV 577



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 131/311 (42%), Gaps = 46/311 (14%)

Query: 156 VFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           VF+AL+ A   SG V  A   F ++   N ++    P H   G L+    N+        
Sbjct: 155 VFDALMIAYWDSGFVSDAIQCFRLVRNSNFQI----PFH-GCGYLLDKMINSNSPVTIWT 209

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---------------- 256
            Y  I +Y      + Y I IN   + G    A  +++++ K+G                
Sbjct: 210 FYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLC 269

Query: 257 -------------------VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
                              + PD    S LI      G+++ A ++  E + +G+    I
Sbjct: 270 KSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGI 329

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           ++++L+     ++    A+  Y  M ++ +KP +   N L+  LC    + K  +++ +M
Sbjct: 330 TFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEM 389

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRR 414
           K +G+ P+ ITY+ L+    ++ D+E  + +     E+GV+ + V F  +I G C   R 
Sbjct: 390 KMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRV 449

Query: 415 YEKARTLNEHV 425
            +  RTL E V
Sbjct: 450 RDAERTLREMV 460


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 203/463 (43%), Gaps = 30/463 (6%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + ++N L++    +K  + A  +L  ++ AG   +    TTL+    K G++D   E
Sbjct: 30  SPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAME 89

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                       D V++  LI+    +G +DR  ++  EM  +   +  + +T   L+  
Sbjct: 90  LLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGK--GISANVVTYSCLVHG 147

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               GQ   A  V   + ++ I      YT  I+   + G    A  + + M +KG  P 
Sbjct: 148 LCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPS 207

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + L+      G V  AF+IL+    +G    +++Y++LM    +     +AL+L+ 
Sbjct: 208 NVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFN 267

Query: 321 HMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            M   +  L+P V T N LI  LC   +L K +++   M   G C N +TY++LL  C +
Sbjct: 268 SMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLK 327

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR--------YEKART--LNEHVLS 427
              ++  + L  Q  + G +PN   +  +I G C  R        + + RT  LN  +  
Sbjct: 328 AGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFD 387

Query: 428 FNSGRPQIENKWT-SLALMVYREAIVAGTIPTV----EVVSKVLGCLQLPYNADIRERLV 482
           +N+    +  + +   A  +++E   A   P +     ++   L      +  +++ ++V
Sbjct: 388 YNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMV 447

Query: 483 ENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
           E +G+  DAL  S L + +   GE D  A S LE   + G  P
Sbjct: 448 E-MGLRPDALTFSTLINRLSKLGELD-EAKSALERMVASGFTP 488



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 105/461 (22%), Positives = 198/461 (42%), Gaps = 29/461 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L + GR+ E ++LLE M++KG  D D V +    +   +   +      F  +    +S 
Sbjct: 78  LCKDGRMDEAMELLEAMKKKG-FDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISA 136

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------V 143
              T++ L+         + A  VL  + E G+  D   YT LI    K G+       +
Sbjct: 137 NVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLL 196

Query: 144 DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           + M E   +P  V +N L++   + G V  AF +L  M  +    D   +T   LMK   
Sbjct: 197 NLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADV--VTYNTLMKGLC 254

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           + G+VD A +++  +        P V+T  + I    + G    A  ++  M KKG   +
Sbjct: 255 DKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGN 314

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + L+     AGK++ A E+ ++  + G      +YS L+      +    A  L+ 
Sbjct: 315 LVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFC 374

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M++  L P +   N L+ +LC    L +   +  +M +    P+ I+++ ++    +  
Sbjct: 375 EMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAG 434

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHV---------LSFN 429
           D +    L  +  E G+ P+ + F  +I   S+    ++A++  E +         L ++
Sbjct: 435 DFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYD 494

Query: 430 SGRPQIENKW-TSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
           S    + +K  T+  + +  +    GT+   ++VS +L CL
Sbjct: 495 SLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCL 535



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 151/375 (40%), Gaps = 59/375 (15%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           ++V PD V +N LI    ++  +  A  +L EM  E     P+ +T   LM      G++
Sbjct: 27  KSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEM--EAAGCFPNSVTCTTLMDGLCKDGRM 84

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A E+                                    + M KKG   D V    L
Sbjct: 85  DEAMELL-----------------------------------EAMKKKGFDADVVLYGTL 109

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I    + G ++   E+  E   +GIS  +++YS L+        W++A  +   M    +
Sbjct: 110 ISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGI 169

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P V T   LI  LC   +    M++L+ M   G  P+ +TY++LL    ++  V     
Sbjct: 170 HPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFK 229

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCSR------------RYEKARTLNEHVLSFNS--GR 432
           +L    E G   ++V +  ++ G+C +             ++    L  +V +FN   G 
Sbjct: 230 ILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGG 289

Query: 433 PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADIRE--RLVENLGVSA 489
              E + T  A+ ++R+ +  G+   +   + +L GCL+     +  E  + V +LG   
Sbjct: 290 LCKEGRLTK-AVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVP 348

Query: 490 DALKRSNLCSLIDGF 504
           ++   S    LIDGF
Sbjct: 349 NSFTYS---ILIDGF 360



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 95/214 (44%), Gaps = 6/214 (2%)

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           C N G  +    + +M  K     +P++  Y   IN   +    + A  +  +M   G  
Sbjct: 9   CRNGGVFEAMGLIREMGRK---SVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCF 65

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+ V  + L+D     G+++ A E+L+  K +G    ++ Y +L+    N  N  +  EL
Sbjct: 66  PNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKEL 125

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++ M    +   V T + L+  LC   Q  +   VL+ M   G+ P+ +TY+ L+    +
Sbjct: 126 FDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCK 185

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
                  + LL+   E G  P+ V +  ++ G+C
Sbjct: 186 DGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLC 219



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 112/270 (41%), Gaps = 19/270 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI    ++GR+++ + +   M +KG    + V +      C     IKEA   +K 
Sbjct: 282 TFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCG-NLVTYNMLLGGCLKAGKIKEAMELWKQ 340

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           V +    P   T+++L+      +    A  +   ++  GL      Y TL+ +  K G 
Sbjct: 341 VLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGS 400

Query: 143 VD---AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           ++   ++F+     N +PD + FN +I    ++G  D  F    +M      + PD +T 
Sbjct: 401 LEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAG--DFQFVKELQMKMVEMGLRPDALTF 458

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+   +  G++D A+   + +          VY   +   S  GD     ++   M  
Sbjct: 459 STLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAA 518

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
           KG + D   +S ++    H+ +     E+L
Sbjct: 519 KGTVLDRKIVSTILTCLCHSIQEVDVMELL 548


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/414 (23%), Positives = 189/414 (45%), Gaps = 26/414 (6%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN +I    ++G +++  DL ++M ++G+      Y++    +CK+ +A+ +A 
Sbjct: 219 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKA-RAMDKAE 277

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
            F + + N    P   T+N L+   +S+   + A +V + ++   +  D    + L+ + 
Sbjct: 278 AFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSL 337

Query: 138 AKSGKV-------DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            K GK+       D M  +   PD   +N ++      G +    D+   M  +   + P
Sbjct: 338 CKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD--GIAP 395

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D  T   L+KA AN G +D+A  ++  +  + +K     Y   I    + G  + A   +
Sbjct: 396 DFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 455

Query: 250 DDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           + M  +GV PD+   + LI  F  H G +  A E++ E  N G+ + I+ +SS++     
Sbjct: 456 NQMIDQGVAPDKYAYNCLIQGFCTH-GSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 514

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                 A  +++   ++ L P     N L+   C   ++ K + V   M S G+ PN + 
Sbjct: 515 LGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVG 574

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTL 421
           Y  L+    +   ++ GL L  +  + G+ P+ +++  II G+    +E  RT+
Sbjct: 575 YGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL----FEAGRTV 624



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 85/411 (20%), Positives = 175/411 (42%), Gaps = 46/411 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+I E  D+ + M  KG  + D   +    N   ++  + +    F L+      P
Sbjct: 337 LCKYGKIKEARDVFDTMAMKGQ-NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 395

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN- 149
              TFN+L+   A+    + A  +   +++ G+K D   Y T+I    + GK+D   E  
Sbjct: 396 DFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 455

Query: 150 -------VKPDRVVFNALITACGQSGAVDRAFDVLAE-MNAEVH---------------- 185
                  V PD+  +N LI      G++ +A ++++E MN  +H                
Sbjct: 456 NQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 515

Query: 186 ----------------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
                            + PD +    LM      G++++A  V+  +    I+     Y
Sbjct: 516 GRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGY 575

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
              +N   + G  +   S++ +M ++G+ P  +  S +ID    AG+   A     E   
Sbjct: 576 GTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTE 635

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            GI++ I +Y+ ++      + + +A+ L++ ++++ +K  + T+N +I  +    ++ +
Sbjct: 636 SGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEE 695

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
             ++ + +    L P+ +TYSI++    ++  VE    + S  +  G  PN
Sbjct: 696 AKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 746



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 93/440 (21%), Positives = 178/440 (40%), Gaps = 64/440 (14%)

Query: 36  IRQG--RISECIDLLEDMERKG--LLDMD------KVYHARFFNVCKSQKAIKEAFRFFK 85
           +R+G  R  E  DLL++++R+G  +L+ D       +  A     C+S  A+  A  F +
Sbjct: 41  VREGTLRPEEAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVAL-FNR 99

Query: 86  L--------VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                    V +PT  T+ +LM  C  +   E A      +   GL+ +  +   L+   
Sbjct: 100 AASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGF 159

Query: 138 AKSGKVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
            ++ + D   +            PD   ++ L+ +    G   +A D+L  M        
Sbjct: 160 CEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCS 219

Query: 189 PDHITIGALMKACANAGQVDRAREVYK-MIHK---------------------------- 219
           P+ +    ++      G V++A +++K M+ +                            
Sbjct: 220 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 279

Query: 220 ----YNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
                N +  P    Y   I   S TG W+ A  V+ +M +  ++PD V LS L+     
Sbjct: 280 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 339

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
            GK++ A ++      +G +  + SY+ ++   +         +L++ M    + P   T
Sbjct: 340 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 399

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            N LI A  +   L K M + ++M+  G+ P+ +TY  ++ A  R   ++  +   +Q  
Sbjct: 400 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 459

Query: 394 EDGVIPNLVMFKCII-GMCS 412
           + GV P+   + C+I G C+
Sbjct: 460 DQGVAPDKYAYNCLIQGFCT 479


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 180/409 (44%), Gaps = 15/409 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT--- 91
           L R G+ SE   L  +M++ G+      Y     ++ K+++  +      ++V       
Sbjct: 302 LCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMD 361

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
           L  +  LM         E A  VLR  Q   +  +   YT L+    ++G +D   +   
Sbjct: 362 LVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLL 421

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                +V P+ V F+++I    + G + +A D + +M      + P+ +T G L+     
Sbjct: 422 QMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDS--GIAPNVVTYGTLIDGFFK 479

Query: 204 AGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
               + A +VY+ M+H+  ++    V    +N   + G+ E A +++ DM ++G++ D V
Sbjct: 480 FQGQEAALDVYRDMLHE-GVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHV 538

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L+D     G + AAF++ QE   + +S   + Y+  +        + +A    + M
Sbjct: 539 NYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEM 598

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           ++  L+P  +T N +I A C   +  K +++L +MK   + PN ITY+ L+V       V
Sbjct: 599 RNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVV 658

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 431
           +    LL++    G  P  +  + ++  CS        L  H L   +G
Sbjct: 659 KKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRPDVILEIHELMMGAG 707



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 174/384 (45%), Gaps = 27/384 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L + G I     L +DM+ +GLL +D V +    +       +  AF+  + +    L
Sbjct: 510 NGLRKNGNIEGAEALFKDMDERGLL-LDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNL 568

Query: 93  S----TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           S     +N+ ++ +C   K SE A   L+ ++  GL+ D   Y T+I    + GK     
Sbjct: 569 SPDAVVYNVFINCLCTLGKFSE-AKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKAL 627

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +        ++KP+ + +  L+    ++G V +A  +L EM +      P  +T   +++
Sbjct: 628 KLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASA--GFAPTSLTHQRVLQ 685

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           AC+ + + D   E+++++    +     VY   ++     G    A  V D+M  +G+ P
Sbjct: 686 ACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAP 745

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D +  +ALI     +  ++ AF I  +  +QG+S  I ++++L+G   +A    +A  + 
Sbjct: 746 DTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVL 805

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             MK + L+P   T + L+T         + + +  +M S G  P   TY+ L+      
Sbjct: 806 SDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLM-----S 860

Query: 380 DDVEVGLM-----LLSQAKEDGVI 398
           D  + G+M     L S+ K  GV+
Sbjct: 861 DFAKAGMMNQAKELFSEMKRRGVL 884



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 132/284 (46%), Gaps = 6/284 (2%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V  D V +N  + A  + G    A  VL+EM      V  D +T+   +      G V  
Sbjct: 111 VAADTVSYNIFLAALSEQGHGRLAPPVLSEMCKR--GVSWDGVTVSTALVGLCRTGLVGE 168

Query: 210 AREVYKM-IHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           A  + +M +    I G   V +   I+   +  D   A +V + MT +GV  D V  ++L
Sbjct: 169 AAALAEMLVRGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSL 228

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           +    H+G  +AA E+++  K  G+   +++Y++L+G     K   +A  LYE M    +
Sbjct: 229 VAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGV 288

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P V T++AL+  LC   Q  +   +  +M  +G+ PN +TY  L+ +  +       L 
Sbjct: 289 LPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLG 348

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 429
           LL +    GV+ +LVM+  ++    +  + E+A+ +  H  S N
Sbjct: 349 LLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDN 392



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 100/457 (21%), Positives = 180/457 (39%), Gaps = 81/457 (17%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           + L +  R SE + LL +M  +G++ MD V +    +    +  I+EA    +   +   
Sbjct: 335 DSLAKARRGSESLGLLGEMVSRGVV-MDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNI 393

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVD 144
            P   T+ +L+     + + +GA QVL  ++E  +  +   ++++I    K G      D
Sbjct: 394 TPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAAD 453

Query: 145 AMFE----NVKPDRVVFNALITAC----GQSGAVDRAFDVLAE-MNAEVHPVDP------ 189
            M +     + P+ V +  LI       GQ  A+D   D+L E + A    VD       
Sbjct: 454 YMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVEANNFVVDSLVNGLR 513

Query: 190 ----------------------DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                                 DH+    LM      G +  A +V + + + N+     
Sbjct: 514 KNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAV 573

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           VY + INC    G +  A S   +M   G+ PD+   + +I      GK   A ++L+E 
Sbjct: 574 VYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEM 633

Query: 288 KNQGISVGIISYSSL-----------------------------------MGACSNAKNW 312
           K   I   +I+Y++L                                   + ACS ++  
Sbjct: 634 KRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACSGSRRP 693

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
              LE++E M    L   ++  N L+  LC          VL +M + G+ P+TIT++ L
Sbjct: 694 DVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNAL 753

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           ++   +   ++    + +Q    G+ PN+  F  ++G
Sbjct: 754 ILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLG 790



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 177/389 (45%), Gaps = 20/389 (5%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D V +NALI    +   +  A  V+  M  +   V  D +   +L+    ++G  D A E
Sbjct: 186 DVVGWNALIDGYCKVQDMAAALAVVERMTTQ--GVALDVVGYNSLVAGFFHSGDADAALE 243

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           V + +    ++     YT  I    +    + A S+Y+ M + GV+PD V LSAL+D   
Sbjct: 244 VVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLC 303

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
             G+   A+ + +E    G++   ++Y +L+ + + A+   ++L L   M S  +   + 
Sbjct: 304 RDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLV 363

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
              AL+  L    ++ +  +VL   +S  + PN +TY++L+ A  R  +++    +L Q 
Sbjct: 364 MYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQM 423

Query: 393 KEDGVIPNLVMFKCII-GMCSR----------RYEKARTLNEHVLSFNS---GRPQIENK 438
           +E  VIPN+V F  II G+  R          R  K   +  +V+++ +   G  + + +
Sbjct: 424 EEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQ 483

Query: 439 WTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLC 498
               AL VYR+ +  G      VV  ++  L+   N +  E L +++      L   N  
Sbjct: 484 EA--ALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYT 541

Query: 499 SLIDGFGEYD--PRAFSLLEEAASFGIVP 525
           +L+DG  +    P AF + +E     + P
Sbjct: 542 TLMDGLFKTGNMPAAFKVGQELMEKNLSP 570



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 17/165 (10%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN L+      G       +L++M  +G+      ++A     CKS   +  AF  +  +
Sbjct: 715 YNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSH-LDNAFAIYAQM 773

Query: 88  PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA-KSGK 142
            +    P ++TFN L+    S+     A  VL  +++ GL+ +   Y  L+T  A KS K
Sbjct: 774 LHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNK 833

Query: 143 VDAM-------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
           V+A+        +   P    +N+L++   ++G +++A ++ +EM
Sbjct: 834 VEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEM 878


>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 492

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 157/355 (44%), Gaps = 20/355 (5%)

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           R FN   S  A+    R  +L P+P   T  +L    AS      A +    + E GL  
Sbjct: 115 RDFN---SAWALVGRMRSLRLGPSP--KTLAILAERYASIGKPHRAVRTFLSMHEHGLHQ 169

Query: 126 DCKLYTTLITTCAKSGKVDAMFE-------NVKPDRVVFNALITACGQSGAVDRAFDVLA 178
           D   + TL+    KS +V+   +         +PD V +N L            A  VL 
Sbjct: 170 DLHSFNTLLDILCKSNRVETAHDLLRTLKSRFRPDTVSYNILANGYCLKKRTPMALRVLK 229

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
           EM      ++P  +T   ++K    + Q+  A E Y  + K   +     YT  I+   +
Sbjct: 230 EMVQR--GIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGE 287

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGII 297
            G+ + A  V+D+M K+GV P+    +ALI        V+ A  + +E   +G+ S  ++
Sbjct: 288 AGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAVFEEMVREGVCSPNVV 347

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +++ ++    +  + ++AL   E M    L+ +V T N +I   CD  ++ K +EV   M
Sbjct: 348 TFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKM 407

Query: 358 KSLGLC-PNTITYSILLVAC---ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              GLC PN  TY++L+ A    ++ +D+ V   LL +  E G +P    F  ++
Sbjct: 408 GD-GLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGFLPRKFTFNRVL 461



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/184 (19%), Positives = 76/184 (41%), Gaps = 1/184 (0%)

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
           +P  +  A++  ++  D+  A ++   M    + P    L+ L +     GK   A    
Sbjct: 100 SPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKPHRAVRTF 159

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
                 G+   + S+++L+     +   + A +L   +KS + +P   + N L    C  
Sbjct: 160 LSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLKS-RFRPDTVSYNILANGYCLK 218

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            + P  + VL +M   G+ P  +TY+ +L    R + ++       + K+     ++V +
Sbjct: 219 KRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSY 278

Query: 405 KCII 408
             +I
Sbjct: 279 TTVI 282


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 170/376 (45%), Gaps = 42/376 (11%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFENV---------KPDRVVFNALITACGQSGAV 170
           E GL  D  LY  L+       K+  + ENV         KPD   FN LI A  ++  +
Sbjct: 151 EFGLALDTLLYNFLLNVLVDGNKL-KLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQI 209

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI------------- 217
             A  V+ EM++  + + PD  T   LM+     G +D A  V + +             
Sbjct: 210 RPAILVMEEMSS--YGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVN 267

Query: 218 ---HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
              H +  +G  E     I+  S  G    A  +Y++M  KG  PDE   + LID   + 
Sbjct: 268 VLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYR 327

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVST 333
           GK++ A  +L+E +  G +  +I+Y++L+ G C N K  ++A E+++ M+   L     T
Sbjct: 328 GKLQEALGLLREMEISGCARNVITYNTLIDGFCKN-KKIEEAEEIFDQMEIQGLSRNSVT 386

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            N LI  LC   ++ +  +++  M   GL P+  TY+ +L    R+ D++    ++    
Sbjct: 387 YNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMT 446

Query: 394 EDGVIPNLVMFKCII-GMC-------SRRYEKARTLNEHVLSFNSGRPQIE----NKWTS 441
            +G  P++V +  +I G+C       + R  ++  L   VL+ ++  P I+     K T 
Sbjct: 447 SNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTK 506

Query: 442 LALMVYREAIVAGTIP 457
            A+ ++RE    G  P
Sbjct: 507 EAMRLFREMEEKGNTP 522



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 152/381 (39%), Gaps = 41/381 (10%)

Query: 70  VCKSQKA-----IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           +CK+ +      + E    + LVP+    TF  LM       + +GAF+V   + +AG  
Sbjct: 203 LCKAHQIRPAILVMEEMSSYGLVPDE--KTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCP 260

Query: 125 ADCKLYTTLITTCAKSGKVDAMFENV------------------------KPDRVVFNAL 160
                   L+    K G+++     +                        +PD   +N L
Sbjct: 261 VTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNML 320

Query: 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220
           I +    G +  A  +L EM  E+     + IT   L+       +++ A E++  +   
Sbjct: 321 IDSLCYRGKLQEALGLLREM--EISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQ 378

Query: 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
            +      Y   I+   ++   + A  + D M  +G+ PD+   ++++ +    G ++ A
Sbjct: 379 GLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKA 438

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST---MNAL 337
            +I+Q   + G    I++Y +L+G    A   + A  L   ++SI+LK  V T    N +
Sbjct: 439 ADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRL---LRSIQLKGMVLTPHAYNPV 495

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD-VEVGLMLLSQAKEDG 396
           I AL    +  + M +  +M+  G  P+  TY I+          +   +  + +  E G
Sbjct: 496 IQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEAVDFVIEMIEKG 555

Query: 397 VIPNLVMFKCII-GMCSRRYE 416
            +P    F  +  G+CS   E
Sbjct: 556 FLPEFSSFYMLAEGLCSLSME 576



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 132/299 (44%), Gaps = 21/299 (7%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           + E L   + +  +G+ +  I+L  +M+ KG    +  Y+    ++C   K ++EA    
Sbjct: 279 IEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGK-LQEALGLL 337

Query: 85  KLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + +        + T+N L+     +K  E A ++   ++  GL  +   Y TLI    KS
Sbjct: 338 REMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKS 397

Query: 141 GKV-------DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            +V       D M  E +KPD+  +N+++T   + G + +A D++  M +  +  +PD +
Sbjct: 398 RRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTS--NGCEPDIV 455

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T G L+     AG+V+ A  + + I    +  TP  Y   I    +    + A  ++ +M
Sbjct: 456 TYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREM 515

Query: 253 TKKGVIPDEVFLSALIDFAG---HAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS 307
            +KG  PD    +  I F G     G +  A + + E   +G      S+  L  G CS
Sbjct: 516 EEKGNTPDA--FTYKIVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLCS 572


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1164

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 185/396 (46%), Gaps = 21/396 (5%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLL---DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +  L+  G + E   + E M   GL+   D   VY AR    C         FR F  V 
Sbjct: 605 FQVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVG 664

Query: 89  N-PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
               ++++N+++  VC   + +E A  +L L++  G   D   Y+T+I    + G++D +
Sbjct: 665 VCWNVASYNIVIHFVCQLGRINE-AHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKV 723

Query: 147 FE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
           ++         +KP+   + ++I    +   +  A +  +EM  +   + PD I    L+
Sbjct: 724 WKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQ--GILPDTIVYTTLV 781

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKG 256
                 G +  A + +  +H  +I  TP+V  YT  I+   Q GD   A  ++ +M  +G
Sbjct: 782 DGFCKRGDIRAASKFFYEMHSRDI--TPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRG 839

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD +  + L++    AG ++ AF +       G S  +++Y++L+       +   A 
Sbjct: 840 LEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSAN 899

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           EL   M  I L+P + T N+++  LC    + + ++++ + ++ GL  +T+TY+ L+ A 
Sbjct: 900 ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAY 959

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            +  +++    +L++    G+ P +V F  ++ G C
Sbjct: 960 CKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFC 995



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 186/413 (45%), Gaps = 32/413 (7%)

Query: 25   VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQ 74
            V   + SYN +I    + GRI+E   LL  ME KG       Y      + RF  + K  
Sbjct: 665  VCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVW 724

Query: 75   KAIKEAFRFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            K I E  +   L PN     S   +L  +C  ++  E   +++      G+  D  +YTT
Sbjct: 725  KLI-EKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIG----QGILPDTIVYTT 779

Query: 133  LITTCAKSGKVDA----MFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
            L+    K G + A     +E    ++ PD + + A+I+   Q G +  A  +  EM    
Sbjct: 780  LVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLC-- 837

Query: 185  HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDW 242
              ++PD IT   LM     AG +  A  V+   H      +P V  YT  I+   + GD 
Sbjct: 838  RGLEPDIITFTELMNGYCKAGHIKDAFRVHN--HMIQAGCSPNVVTYTTLIDGLCKEGDL 895

Query: 243  EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
            + A  +  +M K G+ P+    +++++    +G +E A +++ E +  G++   ++Y++L
Sbjct: 896  DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 955

Query: 303  MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
            M A   +    KA E+   M    L+PT+ T N L+   C    L    ++L+ M + G+
Sbjct: 956  MDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGI 1015

Query: 363  CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
             PN  T++ L+     +++++    +       GV P+   ++ ++ G C+ R
Sbjct: 1016 APNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNAR 1068



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 85/430 (19%), Positives = 164/430 (38%), Gaps = 48/430 (11%)

Query: 21   YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
            Y  DV       N   R G + +   L+E M++KGL      Y +    +C+  K  +  
Sbjct: 700  YTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAE 759

Query: 81   FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              F +++     P    +  L+       D   A +    +    +  D   YT +I+  
Sbjct: 760  EAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 819

Query: 138  AKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
             + G +        + +   ++PD + F  L+    ++G +  AF V   M        P
Sbjct: 820  CQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQA--GCSP 877

Query: 190  DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
            + +T   L+      G +D A E+   + K  ++     Y   +N   ++G+ E A  + 
Sbjct: 878  NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 937

Query: 250  DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSN 308
             +    G+  D V  + L+D    +G+++ A EIL E   +G+   I++++ LM G C +
Sbjct: 938  GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLH 997

Query: 309  AK--------NW--------------------------QKALELYEHMKSIKLKPTVSTM 334
                      NW                          + A  +Y+ M S  ++P   T 
Sbjct: 998  GMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTY 1057

Query: 335  NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
              L+   C+   + +   +  +MK  G   +  TYS+L+    ++        +  Q + 
Sbjct: 1058 ENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRR 1117

Query: 395  DGVIPNLVMF 404
            DG+  +  +F
Sbjct: 1118 DGLAADKEIF 1127



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 73/154 (47%), Gaps = 5/154 (3%)

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN-WQKALELY 319
           +VF   L++F    G +  A ++ ++  N G+ + + S +  +   S   N    A+ ++
Sbjct: 602 DVFFQVLVEF----GMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVF 657

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
                + +   V++ N +I  +C   ++ +   +L  M+  G  P+ I+YS ++    R 
Sbjct: 658 REFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRF 717

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            +++    L+ + K+ G+ PN   +  IIG+  R
Sbjct: 718 GELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCR 751


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 158/336 (47%), Gaps = 19/336 (5%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLR--LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           T+ ++ ++  +   ++    A ++LR  ++ +A LK DC ++  L +T            
Sbjct: 9   TIESYCIVAHILFCARMYYDANRILREMVLSKAELK-DCDVFDVLWST-----------R 56

Query: 149 NV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           NV  P   VF+AL +   +    + A    ++M      V P   +   L+   A  G+ 
Sbjct: 57  NVCVPGFGVFDALFSVLIEEDMFEEALQCFSKMKR--CRVFPKTRSCNGLLHKFARLGKT 114

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D  +  +K +     K T   Y I I+C  + GD E A  ++++M  +G+IPD V  +++
Sbjct: 115 DGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSM 174

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ID  G  G+++      +E K+      +I+Y++L+          K LE +  MK   L
Sbjct: 175 IDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGL 234

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           KP V + + L+ A C  D + + ++   DM+ LGL PN  TY+ L+ A  +  ++     
Sbjct: 235 KPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFR 294

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 421
           L  +  + GV  N+V +  +I G+C   R ++A  L
Sbjct: 295 LADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEEL 330



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 162/354 (45%), Gaps = 14/354 (3%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
            F+V   +   +EA + F  +      P   + N L+   A    ++G  +  + +  AG
Sbjct: 69  LFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAG 128

Query: 123 LKADCKLYTTLITTCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAF 174
            K     Y  +I    K G ++A   +FE +K     PD V +N++I   G+ G +D   
Sbjct: 129 SKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTV 188

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
               EM +     +PD IT   L+      G++ +  E ++ + +  +K     Y+  ++
Sbjct: 189 YFFEEMKS--MSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVD 246

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
              +    + A   Y DM + G++P+E   ++L+D     G +  AF +  E    G+  
Sbjct: 247 AFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEW 306

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
            +++Y++L+    + +  ++A EL+  M +  + P +++  ALI        + + +E+L
Sbjct: 307 NVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELL 366

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            +MK  G+ P+ + Y   + +    + +E   +++++ +E G+  N  ++  ++
Sbjct: 367 DEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLM 420



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/329 (23%), Positives = 144/329 (43%), Gaps = 14/329 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--- 146
           P    F+ L SV       E A Q    ++   +    +    L+   A+ GK D M   
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRF 120

Query: 147 FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F+++     KP    +N +I    + G ++ A  +  EM  +   + PD +T  +++   
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEM--KFRGLIPDTVTYNSMIDGY 178

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              G++D    VY      ++   P+V  Y   INC  + G        + +M + G+ P
Sbjct: 179 GKVGRLDDT--VYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKP 236

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V  S L+D       ++ A +   + +  G+     +Y+SL+ A     N   A  L 
Sbjct: 237 NVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLA 296

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M  + ++  V T  ALI  LCD +++ +  E+   M + G+ PN  +Y+ L+    + 
Sbjct: 297 DEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKA 356

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            +++  L LL + K  G+ P+L+++   I
Sbjct: 357 KNMDRALELLDEMKGRGIKPDLLLYGTFI 385



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 90/421 (21%), Positives = 172/421 (40%), Gaps = 59/421 (14%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    ++G I     L E+M+ +GL+     Y++      K  + + +   FF+ 
Sbjct: 135 TYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGR-LDDTVYFFEE 193

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + +    P + T+N L++  C   K  +G  +  R ++++GLK +   Y+TL+    K  
Sbjct: 194 MKSMSCEPDVITYNTLINCFCKFGKLPKG-LEFFREMKQSGLKPNVVSYSTLVDAFCKED 252

Query: 142 K--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
                    VD     + P+   + +L+ A  + G +  AF +  EM+     V+ + +T
Sbjct: 253 MMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQV--GVEWNVVT 310

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+    +  ++  A E++  +    +      YT  I+   +  + + A  + D+M 
Sbjct: 311 YTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMK 370

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---------- 303
            +G+ PD +     I       K+EAA  ++ E + +GI      Y++LM          
Sbjct: 371 GRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPS 430

Query: 304 --------------------------GACSNAKNWQKALELYEHMKS-IKLKPTVSTMNA 336
                                     G C N K   KA++ +  + +   L+   +   A
Sbjct: 431 EGLHLLEEMLELDIEVTAVTFCVLIDGLCKN-KLVSKAIDYFGRISNDFGLQANAAIYTA 489

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           +I  LC  DQ+     +   M   GL P+   Y+ L+    ++ +V   L L  +  E G
Sbjct: 490 MIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIG 549

Query: 397 V 397
           V
Sbjct: 550 V 550



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 124/283 (43%), Gaps = 20/283 (7%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
           H+Y  L+    + G +S+   L ++M + G+      Y A    +C  ++ IKEA   F 
Sbjct: 274 HTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVER-IKEAEELFG 332

Query: 85  KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           K+V     P L+++  L+     +K+ + A ++L  ++  G+K D  LY T I +     
Sbjct: 333 KMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLE 392

Query: 142 KVDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K++A          + +K +  ++  L+ A  +S        +L EM      V    +T
Sbjct: 393 KIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTA--VT 450

Query: 194 IGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              L+        V +A + +  I + + ++    +YT  I+   +    E A ++++ M
Sbjct: 451 FCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQM 510

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
            +KG++PD    ++LID     G V  A  +  +    G+  G
Sbjct: 511 AQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVESG 553


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 149/347 (42%), Gaps = 14/347 (4%)

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           K+AFR    + N    P + T+++++     S + E A  +L  +   GLK +  +Y  L
Sbjct: 436 KDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPL 495

Query: 134 ITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I+   + G V    E        NV PD   +N+LI    + G V+ +    A+M  +  
Sbjct: 496 ISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQM--QER 553

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + P+  T   L+      G ++ A ++ + +    +K    +Y   +    ++ D E  
Sbjct: 554 GLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKV 613

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
            S +  M  +GV+ D      LI     +G +EAAF +L   +  G    +  YSSL+  
Sbjct: 614 SSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISG 673

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
                + +KA  + + M    + P +   NALI  LC    +     V + + + GL PN
Sbjct: 674 LCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPN 733

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
            +TY+ L+    +  D+     L ++    G+ P+  ++  +   CS
Sbjct: 734 CVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCS 780



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 181/399 (45%), Gaps = 22/399 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----KAIKEAF 81
           +YN LI    R G + E     +DME  GL+     Y A    +CKS+     KA+ +  
Sbjct: 281 TYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEM 340

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              +L PN  +  +  L+       +++ AF++++ +  AG++ +   Y  L+    K G
Sbjct: 341 SCAELKPN--VVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMG 398

Query: 142 KVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++D         + ++ +PD + +N +I    +  +   AF +L+EM  E   + P+  T
Sbjct: 399 QMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEM--ENAGISPNVYT 456

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              ++     +G+ ++A ++ + +    +K    VY   I+   + G+   AC ++D MT
Sbjct: 457 YSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMT 516

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           K  V+PD    ++LI      G+VE + +   + + +G+     +YS L+       + +
Sbjct: 517 KVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLE 576

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A +L + M    LKP       L+ +    D + K       M   G+  +   Y IL+
Sbjct: 577 SAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILI 636

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
                  ++E    +LS  +++G +P++ ++  +I G+C
Sbjct: 637 HNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLC 675



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 136/305 (44%), Gaps = 10/305 (3%)

Query: 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDR--------VVFNALITA 163
           ++V   +  AG+  D   Y+TLI    K  + D   + +   R        V +N LI  
Sbjct: 229 WKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAG 288

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
             +SGAV+ AF    +M  E + + PD  T GAL+     + + + A+ +   +    +K
Sbjct: 289 LCRSGAVEEAFGFKKDM--EDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELK 346

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
               VY   I+   + G+ + A  +  +M   GV P+++    L+      G+++ A  +
Sbjct: 347 PNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLL 406

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           L++          I+Y+ ++       + + A  L   M++  + P V T + +I  LC 
Sbjct: 407 LKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQ 466

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
             +  K  ++L +M + GL PN   Y+ L+    R+ +V +   +  +  +  V+P+L  
Sbjct: 467 SGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYC 526

Query: 404 FKCII 408
           +  +I
Sbjct: 527 YNSLI 531



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 138/323 (42%), Gaps = 13/323 (4%)

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV--------KPDRVVFNALITAC 164
            + R + ++G ++   L   L+ T  KSG+V    E V         P     NAL+   
Sbjct: 161 SIHRALSDSGHRSPAVL-DVLVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDL 219

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
            ++ A+   + V   M      + PD  T   L++A     + D A++V   + +     
Sbjct: 220 LRADAMALLWKVREFMVGA--GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGL 277

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
               Y + I    ++G  E A     DM   G++PD     ALI+    + +   A  +L
Sbjct: 278 NTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALL 337

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
            E     +   ++ Y++L+       N  +A ++ + M +  ++P   T + L+  LC  
Sbjct: 338 DEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKM 397

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            Q+ +   +L  M      P+TITY++++    R    +    LLS+ +  G+ PN+  +
Sbjct: 398 GQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTY 457

Query: 405 KCII-GMC-SRRYEKARTLNEHV 425
             +I G+C S   EKA  L E +
Sbjct: 458 SIMIHGLCQSGEPEKASDLLEEM 480



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 160/409 (39%), Gaps = 68/409 (16%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H Y   ++ G +     L++ M   GL   D +Y     +  KS    K +  F  ++ 
Sbjct: 566 IHGY---LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLD 622

Query: 89  NPTL---STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
              +     + +L+   +SS + E AF+VL  +++ G   D  +Y++LI+   K+   + 
Sbjct: 623 QGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREK 682

Query: 146 MF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
            F        + V P+ V +NALI    +SG +  A +V   + A+   + P+ +T  +L
Sbjct: 683 AFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAK--GLVPNCVTYTSL 740

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM----- 252
           +      G +  A  +Y  +    I     VY++    CS  GD E A  + ++M     
Sbjct: 741 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 800

Query: 253 -----------------------------TKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                                          +G++P+ + +  +I     AGK+     I
Sbjct: 801 ASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTI 860

Query: 284 LQEAKNQGISVGIISYSSL-MGACSNAK-----------------NWQKALELYEHMKSI 325
             E + +        +SSL M   +  K                 N  KAL L + + + 
Sbjct: 861 FVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAK 920

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
                 S+  A++  LC   +L + + +L +M   G+CP+     ILL 
Sbjct: 921 SAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILLT 969


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 115/485 (23%), Positives = 193/485 (39%), Gaps = 77/485 (15%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           P  +TF  LM         E A +V   + E G  A       LI    K G+V+     
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGY 273

Query: 145 ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               + +  +PD++ +N  +    Q+  V  A  V+  M  E H  DPD  T   ++   
Sbjct: 274 IQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGH--DPDVFTYNIVVNCL 331

Query: 202 ANAGQVDRAR--------------------------------EVYKMIHKYNIKG-TPEV 228
              GQ++ A+                                E   +  +  +KG +P+V
Sbjct: 332 CKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDV 391

Query: 229 YT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           YT  I IN   + GD   A  ++++M   G  PDEV  + LID     GK+  A ++L++
Sbjct: 392 YTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKD 451

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            ++ G     I+Y++++         ++A E+++ M    +     T N LI  LC   +
Sbjct: 452 MESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 511

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +     +++ M S GL PN ITY+ +L    ++ D++    +L     +G   ++V +  
Sbjct: 512 IDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGT 571

Query: 407 II-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 465
           +I G+C                  +GR Q+       AL V R   + G  PT +  + V
Sbjct: 572 LINGLCK-----------------AGRTQV-------ALKVLRGMRIKGMRPTPKAYNPV 607

Query: 466 LGCLQLPYNADIRE-----RLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAAS 520
           L  L    N  IR+     R +  +G   DAL    +   +   G     AF  + E   
Sbjct: 608 LQSLFRRNN--IRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVD 665

Query: 521 FGIVP 525
            G +P
Sbjct: 666 KGFIP 670



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 146/334 (43%), Gaps = 11/334 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P + TFN LM     +     A  +L  +   G+  D   +TTL+    + G ++A    
Sbjct: 179 PDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRV 238

Query: 146 ---MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
              M E      +V  N LI    + G V+ A   + +  A+    +PD IT    +   
Sbjct: 239 KARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIAD--GFEPDQITYNTFVNGL 296

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                V  A +V  ++ +         Y I +NC  + G  E A  + + M  +G +PD 
Sbjct: 297 CQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDI 356

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LI       ++E A ++ ++   +G+S  + +++ L+ A     +   AL L+E 
Sbjct: 357 TTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEE 416

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK+    P   T N LI  LC   +L K +++L DM+S G   +TITY+ ++    +K  
Sbjct: 417 MKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMR 476

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
           +E    +  Q    G+  N + F  +I G+C  +
Sbjct: 477 IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDK 510



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 2/259 (0%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           ++ D VV+N L+    +   +     V +EM A    + PD +T   LMKA   A QV  
Sbjct: 142 IQADTVVYNHLLNVLVEGSKMKLLESVYSEMGA--RGIKPDVVTFNTLMKALCRAHQVRT 199

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A  + + +    +      +T  +    + G  E A  V   M + G    +V ++ LI+
Sbjct: 200 AVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLIN 259

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G+VE A   +Q+    G     I+Y++ +       +   AL++ + M      P
Sbjct: 260 GYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDP 319

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            V T N ++  LC   QL +   +L+ M   G  P+  T++ L+ A    + +E  L L 
Sbjct: 320 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLA 379

Query: 390 SQAKEDGVIPNLVMFKCII 408
            Q    GV P++  F  +I
Sbjct: 380 RQVTVKGVSPDVYTFNILI 398



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 130/298 (43%), Gaps = 26/298 (8%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  ++++N LI    + G     + L E+M+  G    +  Y+    N+C   K + +A
Sbjct: 387 VSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK-LGKA 445

Query: 81  FRFFKLV-----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
               K +     P  T+ T+N ++         E A +V   +   G+  +   + TLI 
Sbjct: 446 LDLLKDMESTGCPRSTI-TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLID 504

Query: 136 TCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K  K+D  F        E ++P+ + +N+++T   + G + +A D+L  M A    V
Sbjct: 505 GLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEV 564

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           D   +T G L+     AG+   A +V + +    ++ TP+ Y   +    +  +   A S
Sbjct: 565 DV--VTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALS 622

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAG---HAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           ++ +M + G  PD   L+  I F G     G ++ AF+ + E  ++G      S+  L
Sbjct: 623 LFREMAEVGEPPDA--LTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 678



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 169/396 (42%), Gaps = 28/396 (7%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           ++  P   V+  +I   G  GA+D    ++AEM  E H V      + + + +       
Sbjct: 68  DDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLG--VVHSFLDSYEGQQLF 125

Query: 208 DRAREVY--KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           D A ++   ++   + I+    VY   +N   +    +   SVY +M  +G+ PD V  +
Sbjct: 126 DDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFN 185

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+     A +V  A  +L+E  ++G++    ++++LM       + + AL +   M  +
Sbjct: 186 TLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEM 245

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
               T  T+N LI   C   ++   +  +    + G  P+ ITY+  +    + D V   
Sbjct: 246 GCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHA 305

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKAR-TLNEHV--------LSFNSGRPQ 434
           L ++    ++G  P++  +  ++  +C   + E+A+  LN+ V         +FN+    
Sbjct: 306 LKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAA 365

Query: 435 I-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE---NLGVSAD 490
           +        AL + R+  V G  P V   + ++  L    +  +  RL E   N G + D
Sbjct: 366 LCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPD 425

Query: 491 ALKRS----NLCSLIDGFGEYDPRAFSLLEEAASFG 522
            +  +    NLCSL    G+   +A  LL++  S G
Sbjct: 426 EVTYNTLIDNLCSL----GKLG-KALDLLKDMESTG 456


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 178/382 (46%), Gaps = 25/382 (6%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSG---KVDAM 146
           T+  F+++    A+  D   A ++ + +Q +   K    +YT +I    + G   K   +
Sbjct: 45  TMQDFSLIFREFAARSDWHRALRLFKYMQRQQWCKPTEHIYTIMIGIMGREGLLEKCSEI 104

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE+     VK +   F ALI A G++G  + +  +LA M  E   V+P+ IT   ++ AC
Sbjct: 105 FEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKE--QVEPNLITYNTVLNAC 162

Query: 202 ANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           +  G   +    ++  +    I+     Y   ++ CS  G  E A  V+  M + GV+ D
Sbjct: 163 SKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVAD 222

Query: 261 EVFLSALID-FAG--HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            V   +L+D FAG    G+VE   E+L+E +++G    I  Y+SL+ A ++A N   A  
Sbjct: 223 AVTYKSLVDTFAGSNQLGRVE---ELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAG 279

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           +++ M+     P V T + L+    +     +   + SDMK L   P   TY+ L+    
Sbjct: 280 VFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFG 339

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSGRPQI 435
                +  + L     + GV P+   +  ++ +C R     +A  +++H+L+ N   P +
Sbjct: 340 EGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLT-NESTPSL 398

Query: 436 ENKWTSLA----LMVYREAIVA 453
           E     ++    + +Y++A+V+
Sbjct: 399 EASAGLISSYGKMAMYKDALVS 420



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 153/683 (22%), Positives = 265/683 (38%), Gaps = 127/683 (18%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           +DV   ++++  LI    R G+    + LL  M +K  ++ + + +    N C       
Sbjct: 111 NDVKWNVYAFTALINAYGRNGQYEASLHLLARM-KKEQVEPNLITYNTVLNACSKGGLDW 169

Query: 79  EAF-RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           E     F  + +    P L T+N L+S C+S    E A  V + + E+G+ AD   Y +L
Sbjct: 170 EGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMVFKTMNESGVVADAVTYKSL 229

Query: 134 ITTCAKS---GKVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           + T A S   G+V+ +   ++     PD   +N+LI A   +G V  A  V  +M  +  
Sbjct: 230 VDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYADAGNVHGAAGVFKQM--QRG 287

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
              PD  T   L++   N G  ++ R ++  +   +   T   Y   I    + G ++ +
Sbjct: 288 GCAPDVETYSTLLRIYGNQGCFEQVRSLFSDMKDLSTPPTVATYNSLIQVFGEGGYFQES 347

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
            +++ DM   GV PD+   SAL+   G  G    A +I Q       +  + + + L+ +
Sbjct: 348 INLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISS 407

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL-CP 364
                 ++ AL  Y  ++   L P VS  +ALI     G    +    L  M   G   P
Sbjct: 408 YGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGGLYVEAGSTLYAMNKAGFQAP 467

Query: 365 NTITYSIL---------------LVACERKDDVEV-------------GLMLLSQAKEDG 396
            +   S++                   ++K+  EV              + LL +AKE+ 
Sbjct: 468 VSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEVDERTHETLLGVYCDMGLLEEAKEEF 527

Query: 397 VI-------PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 449
           VI       P   ++  ++ +C RR                      +KW   A  +  E
Sbjct: 528 VIIKETSKVPGARVYCLLLSLCVRR----------------------SKW-DYATQLLDE 564

Query: 450 AIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFG---- 505
            I AG +  V     V+G ++  Y+AD   ++VE    + D LK  ++   +D +     
Sbjct: 565 MIAAGGLHQV-----VVGIVRGTYDADFSWQVVE---YAFDGLKLRDMEESMDFYNALVE 616

Query: 506 -----EYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHR 560
                    RA  +L +A   G  P              +  I T +V+ + +     HR
Sbjct: 617 LLVYCNQKARAARVLADAMQRGAFP--------------EAFIKTRRVWSVNV-----HR 657

Query: 561 LAAGAKLPNV----NILLPVEKTQIMSVGGEKTIDIAER-------TTQAIAALLRRLGL 609
           ++AGA +  +    N L   EK   M+       DI +          + + A L+    
Sbjct: 658 MSAGATVTALSTWFNDLQECEKLPFMTSIVVSCGDIEDHRKVEDLPVAKVVQAFLKHYAA 717

Query: 610 PYQ-GNGSYGKIRINGLALKRWF 631
           P +  + + G+I   G ALK W 
Sbjct: 718 PLETASWNEGRIVCKGEALKPWL 740


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 106/467 (22%), Positives = 205/467 (43%), Gaps = 36/467 (7%)

Query: 71  CKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           C       EAF  F  +      PT+ T N L+S+      +E A+ +   +    +K+ 
Sbjct: 161 CCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSS 220

Query: 127 CKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLA 178
              +  +I    K GK+    +         VKP+ V +N ++     SG V+ A  +L 
Sbjct: 221 VYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILT 280

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
            M  +   ++PD  T G+L+      G+++ A ++++ + +  ++ +  +Y   I+    
Sbjct: 281 TMKRQ--KIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCN 338

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G+ + A +  D+M KKG+ P     ++LI       + + A  +++E + +GIS   I+
Sbjct: 339 KGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAIT 398

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y+ L+       N +KA  L++ M +  +KPT  T  +L+  L   +++ +  ++   + 
Sbjct: 399 YNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKIT 458

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYE 416
           S G+ P+ I ++ L+       +V+    LL       V P+ V F  I+ G C   + E
Sbjct: 459 SEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVE 518

Query: 417 KARTLNEHV---------LSFN------SGRPQIENKWTSLALMVYREAIVAGTIPTVEV 461
           +AR L + +         +SFN      S R  I++     A  V  E +  G  PTV  
Sbjct: 519 EARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKD-----AFRVRNEMLDTGFNPTVLT 573

Query: 462 VSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD 508
            + ++  L      D+ E L++ +         +   +LI+G  + +
Sbjct: 574 YNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVN 620



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 149/327 (45%), Gaps = 11/327 (3%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MF 147
           F+ L+  C     ++ AF+    ++E G+    +   +L++   K  + +A       MF
Sbjct: 154 FDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMF 213

Query: 148 E-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              +K     FN +I    + G + +A D +  M  E   V P+ +T   ++    ++G+
Sbjct: 214 RLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHM--ETSGVKPNIVTYNTIVHGYCSSGR 271

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           V+ A  +   + +  I+     Y   I+   + G  E A  ++++M +KG+ P  V  + 
Sbjct: 272 VEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNT 331

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LID   + G ++ A     E   +GIS  + +Y+SL+ A    +   +A  + + ++   
Sbjct: 332 LIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKG 391

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           + P   T N LI   C      K   +  +M + G+ P   TY+ LL    +K+ ++   
Sbjct: 392 ISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEAD 451

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMCS 412
            L  +   +GV+P+++MF  +I G CS
Sbjct: 452 DLFKKITSEGVLPDVIMFNALIDGHCS 478



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 150/327 (45%), Gaps = 19/327 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-KSQKAIKEAFR--F 83
           +Y  LI    +QGR+ E   + E+M +KGL     +Y+      C K    +  A++   
Sbjct: 293 TYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEM 352

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKS 140
            K   +PT+ST+N L+      + ++ A  +++ +QE G+  D   Y  LI     CA +
Sbjct: 353 LKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANA 412

Query: 141 GKV----DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            K     D M  + +KP +  + +L+    +   +  A D+  ++ +E   V PD I   
Sbjct: 413 KKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSE--GVLPDVIMFN 470

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           AL+    +   V  A E+ K + +  +      +   +    + G  E A  ++D+M ++
Sbjct: 471 ALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRR 530

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQK 314
           G+ PD +  + LI      G ++ AF +  E  + G +  +++Y++L+ G C N +    
Sbjct: 531 GIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKN-QEGDL 589

Query: 315 ALELYEHMKSIKLKPTVSTMNALITAL 341
           A EL + M S  + P  +T   LI  +
Sbjct: 590 AEELLKEMVSKGMTPDDTTYFTLIEGI 616



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 12/293 (4%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           +VF+ LI +C      D AF+    M  +   V P   T  +L+       + + A  +Y
Sbjct: 152 IVFDYLIKSCCDMNRADEAFECFYTMKEK--GVLPTIETCNSLLSLFLKLNRTEAAWVLY 209

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             + +  IK +   + I IN   + G  + A      M   GV P+ V  + ++     +
Sbjct: 210 AEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSS 269

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G+VEAA  IL   K Q I     +Y SL+         ++A +++E M    L+P+    
Sbjct: 270 GRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIY 329

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC---ERKDDVEVGLMLLSQ 391
           N LI   C+   L        +M   G+ P   TY+ L+ A    +R D+ E    ++ +
Sbjct: 330 NTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAEC---MIKE 386

Query: 392 AKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            +E G+ P+ + +  +I G C     +KA  L++ +L+  SG    +  +TSL
Sbjct: 387 IQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLA--SGIKPTKKTYTSL 437



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/354 (19%), Positives = 152/354 (42%), Gaps = 26/354 (7%)

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           I    L+K+C +  + D A E +  + +  +  T E     ++   +    E A  +Y +
Sbjct: 152 IVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAE 211

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK 310
           M +  +       + +I+     GK++ A + +   +  G+   I++Y++++ G CS+ +
Sbjct: 212 MFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGR 271

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             + A  +   MK  K++P   T  +LI+ +C   +L +  ++  +M   GL P+ + Y+
Sbjct: 272 -VEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYN 330

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-----------GMCSRRYEKAR 419
            L+     K ++++      +  + G+ P +  +  +I             C  +  + +
Sbjct: 331 TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEK 390

Query: 420 TLNEHVLSFN---SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLP---Y 473
            ++   +++N   +G  +  N     A +++ E + +G  PT +  + +L  L       
Sbjct: 391 GISPDAITYNILINGYCRCAN--AKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMK 448

Query: 474 NADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
            AD   + + + GV  D +      +LIDG         AF LL++     + P
Sbjct: 449 EADDLFKKITSEGVLPDVIM---FNALIDGHCSNSNVKGAFELLKDMDRMKVPP 499



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 66/308 (21%), Positives = 123/308 (39%), Gaps = 57/308 (18%)

Query: 271 AGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
            G    +   FE L  ++++ G    I+ +  L+ +C +     +A E +  MK   + P
Sbjct: 126 GGTTNSIREIFEFLAASRDRLGFKSSIV-FDYLIKSCCDMNRADEAFECFYTMKEKGVLP 184

Query: 330 TVSTMNAL-----------------------------------ITALCDGDQLPKTMEVL 354
           T+ T N+L                                   I  LC   +L K  + +
Sbjct: 185 TIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFV 244

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
             M++ G+ PN +TY+ ++        VE    +L+  K   + P+   +  +I GMC +
Sbjct: 245 GHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQ 304

Query: 414 -RYEKARTLNEHVLS---------FNSGRPQIENKWTSLALMVYR-EAIVAGTIPTVEVV 462
            R E+A  + E ++          +N+      NK        Y+ E +  G  PT+   
Sbjct: 305 GRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTY 364

Query: 463 SKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGFGE--YDPRAFSLLEE 517
           + ++  L +    D  E +++ +   G+S DA+  +    LI+G+       +AF L +E
Sbjct: 365 NSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYN---ILINGYCRCANAKKAFLLHDE 421

Query: 518 AASFGIVP 525
             + GI P
Sbjct: 422 MLASGIKP 429


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 152/330 (46%), Gaps = 16/330 (4%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R F+ +P P + TFN+++       +   A  +   ++E G   D   + +LI    K G
Sbjct: 178 RLFEQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCG 237

Query: 142 KVDAMFENV--------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++D + + V        K D V +NALI    + G ++ A+   A M  E   V  + +T
Sbjct: 238 ELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKRE--GVMANVVT 295

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYD 250
               + A    G V   RE  K+  +  ++G       YT  I+   + G  + A  + D
Sbjct: 296 FSTFVDAFCKEGLV---REAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLD 352

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M ++GV  + V  + L+D      KV  A ++L+  +  G+    + Y++L+      K
Sbjct: 353 EMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNK 412

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
           N +KAL L   MK+  L+  +S   ALI  LC+  +L +   +L+ M   GL PN I Y+
Sbjct: 413 NSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYT 472

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
            ++ AC +   V   + +L +  + G  PN
Sbjct: 473 TMMDACFKSGKVPEAIAMLQKILDSGFQPN 502



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/335 (22%), Positives = 155/335 (46%), Gaps = 8/335 (2%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK--SGK-VDAMFEN 149
           S  + L+SV A     + A + +  V+E  +  + +    ++   A+  SG+ V  +FE 
Sbjct: 123 SVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFEQ 182

Query: 150 V-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           +  P+   FN +I    + G +  A  + + M  E+  + PD +T  +L+      G++D
Sbjct: 183 LPAPNVFTFNIVIDFLCKEGELAEARSLFSRMK-EMGCL-PDVVTFNSLIDGYGKCGELD 240

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
              ++ + + +   K     Y   INC  + G  E A   +  M ++GV+ + V  S  +
Sbjct: 241 EVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFV 300

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           D     G V  A ++  + + +G+++   +Y+ L+     A     A+ L + M    + 
Sbjct: 301 DAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVP 360

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
             V T   L+  LC   ++ +  +VL  M+  G+  N + Y+ L+       + E  L L
Sbjct: 361 LNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGL 420

Query: 389 LSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 421
           LS+ K  G+  ++ ++  +I G+C+  + ++A++L
Sbjct: 421 LSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSL 455



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 145/339 (42%), Gaps = 38/339 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA------IKEAFRFFKLVPNP 90
           ++G + E + L   M  +G+   +  Y       CK+ +       + E  R  + VP  
Sbjct: 305 KEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVR--QGVPLN 362

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDAMF 147
            ++   ++  +C   K +E A  VLR++++AG++A+  LYTTLI        S K   + 
Sbjct: 363 VVTYTVLVDGLCKERKVAE-AEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLL 421

Query: 148 ENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
             +K      D  ++ ALI        +D A  +L +M+     ++P++I    +M AC 
Sbjct: 422 SEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDES--GLEPNYIIYTTMMDACF 479

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            +G+V    E   M+ K    G               G    A  ++++M  KG+  D+V
Sbjct: 480 KSGKVP---EAIAMLQKILDSGFQ----------PNNGCLNEAVQLFNEMVHKGMSLDKV 526

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +AL+D     G +  AF +  +  + G+ + +  Y+  +    N     +A E++  M
Sbjct: 527 VYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEM 586

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
               + P  +  N LIT      Q+P+  E+    KS G
Sbjct: 587 IGHGIAPDRAVYNCLIT------QIPEIRELGGGNKSSG 619



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/367 (19%), Positives = 144/367 (39%), Gaps = 59/367 (16%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P + TFN L+       + +   Q++  ++ +G KAD   Y  LI    K G+++  +  
Sbjct: 221 PDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGY 280

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E V  + V F+  + A  + G V  A  + A+M   V  +  +  T   L+   
Sbjct: 281 FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQM--RVRGMALNEFTYTCLIDGT 338

Query: 202 ANAGQVD-----------------------------------RAREVYKMIHKYNIKGTP 226
             AG++D                                    A +V +M+ K  ++   
Sbjct: 339 CKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANE 398

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
            +YT  I+      + E A  +  +M  KG+  D     ALI    +  K++ A  +L +
Sbjct: 399 LLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTK 458

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               G+    I Y+++M AC  +    +A+ + + +     +P    +N           
Sbjct: 459 MDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLN----------- 507

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
             + +++ ++M   G+  + + Y+ LL    ++ ++     L ++  + G+  +L  + C
Sbjct: 508 --EAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTC 565

Query: 407 II-GMCS 412
            I G C+
Sbjct: 566 FISGFCN 572


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/363 (25%), Positives = 157/363 (43%), Gaps = 17/363 (4%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV       N L+R+G++ +   L ++M  +G+      Y+      C S K  KEA   
Sbjct: 205 DVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKP-KEAIGI 263

Query: 84  FKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           F+ +      P + T+N LM     +  S  A +V   + + G K D  +Y TL+   A 
Sbjct: 264 FRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYAT 323

Query: 140 SGK-------VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            G        +D M  N  +PD  +FN LI A  + G VD A    ++M  +   + P+ 
Sbjct: 324 EGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQ--GLHPNI 381

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T G +M A    G+VD A   +  +    +     V+   I+       W+ A  +  +
Sbjct: 382 VTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVE 441

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK 310
           M  +G+ P+ +F + L++     G V  A  I        +   +I+Y++L+ G C + K
Sbjct: 442 MIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGK 501

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
              +A +L E M    +KP   T N +I   C   ++     +   M S G+ P  + YS
Sbjct: 502 -VDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYS 560

Query: 371 ILL 373
            +L
Sbjct: 561 TIL 563



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 123/296 (41%), Gaps = 14/296 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQ----EAGLKADCKLYTTLITTCAKSGKVDA 145
           P   ++N+L+        S+ A  +L  +       G   D   YTT+I    + G++D 
Sbjct: 165 PNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDK 224

Query: 146 MF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
            +        + + P+ + +N L+     SG    A  +  +M  +   V+PD +T   L
Sbjct: 225 AYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRD--GVEPDVVTYNTL 282

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           M      G+   AR+V+  + K   K    +Y   ++  +  G       + D M + G 
Sbjct: 283 MVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGT 342

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD    + LI      G V+ A     + + QG+   I++Y ++M A         A+ 
Sbjct: 343 QPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMS 402

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            ++ + S  L P       LI  LC  D+  K  E+  +M   G+CPNTI ++ LL
Sbjct: 403 QFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLL 458



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/389 (21%), Positives = 162/389 (41%), Gaps = 17/389 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    + GR  E   + + M +KG      +Y             ++       +
Sbjct: 278 TYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVM 337

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V N   P    FN+L+   A     + A      +++ GL  +   Y T++    + GKV
Sbjct: 338 VRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKV 397

Query: 144 DAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D           E + P+ VVF  LI         D+A ++  EM      + P+ I   
Sbjct: 398 DDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGR--GICPNTIFFN 455

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            L+      G V RA+ ++ ++ + +++     YT  I+     G  + A  + + M   
Sbjct: 456 TLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLD 515

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           GV P+EV  + +I+     G++E A  + ++  ++G++ GI+ YS+++      +    A
Sbjct: 516 GVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAA 575

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            ELY  M    +K  + T N ++  LC  +     + +  ++  +       T++I++ A
Sbjct: 576 KELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDA 635

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
             +    +    L +     G++PN+V +
Sbjct: 636 LLKGGRHDEAKDLFASLLARGLVPNVVTY 664



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 157/361 (43%), Gaps = 26/361 (7%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           LH Y     +G + +   LL+ M R G      +++       K     +    F K+  
Sbjct: 318 LHGY---ATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQ 374

Query: 89  ---NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TTCAKSG 141
              +P + T+  +M ++C   K  +   Q  RL+ E GL  +  ++ TLI     C K  
Sbjct: 375 QGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISE-GLTPNGVVFRTLIHGLCACDKWD 433

Query: 142 K-----VDAMFENVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHIT 193
           K     V+ +   + P+ + FN L+    + G V RA   FD++  ++ +      D IT
Sbjct: 434 KAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQC-----DVIT 488

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+      G+VD A ++ + +    +K     Y   IN   + G  E ACS++  M 
Sbjct: 489 YTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMA 548

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNW 312
            KGV P  V  S ++       ++ AA E+       GI + I +Y+ ++ G C N    
Sbjct: 549 SKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQN-NCT 607

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
             AL ++ ++  I       T N +I AL  G +  +  ++ + + + GL PN +TY ++
Sbjct: 608 DDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLM 667

Query: 373 L 373
           +
Sbjct: 668 M 668



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 153/345 (44%), Gaps = 20/345 (5%)

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           F +L+   T S F++  ++ A +++S      L L      +AD   Y+ +I  C+++G 
Sbjct: 55  FDELLRRDTTSIFDLNSALSAVARESPAV--ALSLFNRMP-RADLCTYSIVIGCCSRAGH 111

Query: 143 VDAMFENV--------KPDRVVFNALITACGQSGAVDRAFDV-LAEMNAEVHPVDPDHIT 193
           +D  F  +            + F+ L+           A D+ L  M A      P+  +
Sbjct: 112 LDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPAL--GCTPNAFS 169

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEV--YTIAINCCSQTGDWEFACSVY 249
              L+K   +  +  +A  +   +   + +G   P+V  YT  IN   + G  + A  ++
Sbjct: 170 YNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLF 229

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSN 308
           D+M  +G+ P+ +  + L+     +GK + A  I ++    G+   +++Y++LM   C N
Sbjct: 230 DEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKN 289

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            ++ + A ++++ M     KP  S    L+        L +  ++L  M   G  P+   
Sbjct: 290 GRSME-ARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYI 348

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           ++IL+ A  +   V+  ++  S+ ++ G+ PN+V +  ++    R
Sbjct: 349 FNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCR 393


>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
           [Vitis vinifera]
          Length = 811

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 186/424 (43%), Gaps = 22/424 (5%)

Query: 30  HSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LI   R+G +  E   +L++M+  G    DKV +    +V    +  KEA    +
Sbjct: 272 YTYNTLISCCRRGNLYEEAAGVLKEMKLAGF-SPDKVTYNALLDVYGKSRRSKEAMEVLQ 330

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P++ T+N L+S  A     E A ++   + E G+K D   YTTL++   K+G
Sbjct: 331 EMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAG 390

Query: 142 KVDA---MFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K  A   +FE +     KP+   FNALI   G  G       V  ++  +     PD +T
Sbjct: 391 KDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDI--KTFQCSPDIVT 448

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+      G       V+K + +       + +   I+  S+ G ++ A +VY  M 
Sbjct: 449 WNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRML 508

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + GV PD    +A++      G  + + ++L E K+       ++Y SL+ A +N K  +
Sbjct: 509 EAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIE 568

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +   L E + S  ++P    +  L+      D L +T     +++  G  P+  T + ++
Sbjct: 569 RMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQRGFSPDITTLNAMV 628

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG 431
               R+  V     +L   K  G  P+L  +  ++ M SR   +E++  +   +L+    
Sbjct: 629 SIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEEILREILA-KGI 687

Query: 432 RPQI 435
           RP I
Sbjct: 688 RPDI 691



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 181/422 (42%), Gaps = 51/422 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + GR+S    LL ++ + G  D+D   +        S    +EA   FK +      P
Sbjct: 175 LGKGGRVSAAASLLHNLCKDGF-DVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVGCKP 233

Query: 91  TLSTFNMLMSVCAS-SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGK 142
           TL T+N++++V             ++  ++ AG+  D   Y TLI+ C +       +G 
Sbjct: 234 TLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGV 293

Query: 143 VDAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +  M      PD+V +NAL+   G+S     A +VL EM     P  P  +T  +L+ A 
Sbjct: 294 LKEMKLAGFSPDKVTYNALLDVYGKSRRSKEAMEVLQEMEGNGCP--PSIVTYNSLISAY 351

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A  G ++ A E+   + +  IK     YT  ++   + G  + A  ++++M  +G  P+ 
Sbjct: 352 ARDGLLEDALELKNQMVEKGIKPDVFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNI 411

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG----------------- 304
              +ALI   G+ GK     ++ ++ K    S  I+++++L+                  
Sbjct: 412 CTFNALIKMHGNRGKFTEMMKVFEDIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKE 471

Query: 305 ------------------ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
                             + S   ++ +A+ +Y+ M    + P +S+ NA++ AL  G  
Sbjct: 472 MKRAGFVPERDTFNTLISSYSRCGSFDQAMAVYKRMLEAGVNPDLSSYNAVLAALARGGL 531

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
             ++ +VL++MK     PN +TY  LL A     ++E    L  +     + P  V+ K 
Sbjct: 532 WKQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEIERMCALAEEIYSGIIEPRAVLLKT 591

Query: 407 II 408
           ++
Sbjct: 592 LV 593



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 142/300 (47%), Gaps = 20/300 (6%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
           +P + T+N L+SV   +        V + ++ AG   +   + TLI++ ++ G  D    
Sbjct: 443 SPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMA 502

Query: 146 ----MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
               M E  V PD   +NA++ A  + G   ++  VLAEM        P+ +T  +L+ A
Sbjct: 503 VYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKD--GRCKPNELTYCSLLHA 560

Query: 201 CANAGQVDR----AREVYKMIHKYNIKGTPEVYTIAINC-CSQTGDWEFACSVYDDMTKK 255
            AN  +++R    A E+Y  I     +       + +N  C    + E A   + ++ ++
Sbjct: 561 YANGKEIERMCALAEEIYSGI--IEPRAVLLKTLVLVNSKCDLLMETERA---FLELRQR 615

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  PD   L+A++   G    V  A EIL   K  G +  + +Y+SLM   S + N++++
Sbjct: 616 GFSPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERS 675

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            E+   + +  ++P + + N +I A C   ++     VLS+M+  G  P+ ITY+  + +
Sbjct: 676 EEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIAS 735



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 158/393 (40%), Gaps = 59/393 (15%)

Query: 75  KAIKEAFRFFKLVPNPTLSTF-------NMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           K    A R F+ V N   S          +++S+         A  +L  + + G   D 
Sbjct: 141 KKCDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGFDVDV 200

Query: 128 KLYTTLITTCAKSGK-------------------------------------------VD 144
             YT++IT    +G+                                           VD
Sbjct: 201 YAYTSMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVD 260

Query: 145 AMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            M    + PD   +N LI+ C +    + A  VL EM  ++    PD +T  AL+     
Sbjct: 261 RMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEM--KLAGFSPDKVTYNALLDV--- 315

Query: 204 AGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            G+  R++E  +++ +    G P     Y   I+  ++ G  E A  + + M +KG+ PD
Sbjct: 316 YGKSRRSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPD 375

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + L+     AGK +AA +I +E +N+G    I ++++L+    N   + + ++++E
Sbjct: 376 VFTYTTLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFE 435

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            +K+ +  P + T N L++         +   V  +MK  G  P   T++ L+ +  R  
Sbjct: 436 DIKTFQCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCG 495

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             +  + +  +  E GV P+L  +  ++   +R
Sbjct: 496 SFDQAMAVYKRMLEAGVNPDLSSYNAVLAALAR 528



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/377 (22%), Positives = 161/377 (42%), Gaps = 27/377 (7%)

Query: 137 CAKSGKVDAMFENVKPDRVVFNA-----LITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           C  + +V     N K   ++ N      +I+  G+ G V  A  +L  +  +   VD   
Sbjct: 143 CDTALRVFEWVRNRKESELLLNGSIIAVIISILGKGGRVSAAASLLHNLCKDGFDVDVYA 202

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYD 250
            T  +++ A  + G+   A  V+K + +   K T   Y + +N   + G  W     + D
Sbjct: 203 YT--SMITAFTSNGRYREAVMVFKKMEEVGCKPTLITYNVILNVYGKMGMPWNKMVGLVD 260

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            M   G+ PD    + LI         E A  +L+E K  G S   ++Y++L+     ++
Sbjct: 261 RMKSAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSR 320

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             ++A+E+ + M+     P++ T N+LI+A      L   +E+ + M   G+ P+  TY+
Sbjct: 321 RSKEAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYT 380

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSF 428
            LL   E+    +  + +  + + +G  PN+  F  +I M   R  + +   + E + +F
Sbjct: 381 TLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTF 440

Query: 429 NSGRPQIENKWTSLALM-----------VYREAIVAGTIPTVEVVSKVLG----CLQLPY 473
               P I    T L++            V++E   AG +P  +  + ++     C     
Sbjct: 441 QCS-PDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQ 499

Query: 474 NADIRERLVENLGVSAD 490
              + +R++E  GV+ D
Sbjct: 500 AMAVYKRMLE-AGVNPD 515



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/353 (18%), Positives = 158/353 (44%), Gaps = 23/353 (6%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKS-QKAIK 78
           S  + ++N L+    + G  SE   + ++M+R G +     ++     ++ C S  +A+ 
Sbjct: 443 SPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQAMA 502

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
              R  +   NP LS++N +++  A     + + +VL  +++   K +   Y +L+   A
Sbjct: 503 VYKRMLEAGVNPDLSSYNAVLAALARGGLWKQSEKVLAEMKDGRCKPNELTYCSLLHAYA 562

Query: 139 KSGKVD---AMFENV-----KPDRVVFNALI---TACGQSGAVDRAFDVLAEMNAEVHPV 187
              +++   A+ E +     +P  V+   L+   + C      +RAF  L +        
Sbjct: 563 NGKEIERMCALAEEIYSGIIEPRAVLLKTLVLVNSKCDLLMETERAFLELRQ-----RGF 617

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            PD  T+ A++        V +A E+   + +     +   Y   +   S++ ++E +  
Sbjct: 618 SPDITTLNAMVSIYGRRQMVAKANEILDCMKRGGFTPSLTTYNSLMYMYSRSANFERSEE 677

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +  ++  KG+ PD +  + +I      G++  A  +L E +  G +  II+Y++ + + +
Sbjct: 678 ILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIASYA 737

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
               + +A+++  +M     KP  ST N+++   C  ++  +    +++++ L
Sbjct: 738 ADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVDWYCKLNRRDEASMFVNNLRKL 790


>gi|9755888|emb|CAC01941.1| RSP67.2 [Raphanus sativus]
          Length = 700

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 175/381 (45%), Gaps = 34/381 (8%)

Query: 139 KSGKV-DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           KS K+ D M +  VKPD   F  LI+   Q G  +RA +   +M +    ++PD++T+ A
Sbjct: 191 KSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPNRAVEWFEKMPS--FGLEPDNVTLAA 248

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ A   AG V+ A  +Y        +  P  ++  I      G+++   ++Y++M   G
Sbjct: 249 MIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLG 308

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V P+ V  + L+D  G A +   A  I ++  + G      +Y++L+ A   A+  + AL
Sbjct: 309 VKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDAL 368

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVA 375
            +Y  MK   ++ TV   N L++   D   + +  E+  DMKS G C P++ T+S L+  
Sbjct: 369 VIYRQMKGKGMELTVLLYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITV 428

Query: 376 ---CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
              C R  + E     L + +E G  P L +   +I  C   Y KA+ +++ V +F    
Sbjct: 429 YSCCGRVSEAEAA---LREMREAGFEPTLFVLTSLI-QC---YGKAKQVDDVVRTFE--- 478

Query: 433 PQIENKWTSLALMVYREAIVAGTIPTV------EVVSKVLGCLQ--LPYNADIRERLVEN 484
            Q+      L L +  +    G +  V      E + K++GC++   P    + + LVE 
Sbjct: 479 -QV------LELGIEPDDRFCGCLLNVMTQTPKEEIGKLIGCVEKAKPKLGRVEKMLVEE 531

Query: 485 LGVSADALKRSNLCSLIDGFG 505
                  LK+     LID  G
Sbjct: 532 ENCEEGVLKK-EASELIDSIG 551



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 145/318 (45%), Gaps = 22/318 (6%)

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           I     MK    +  ++++ +++  + +  +K     +T  I+C  Q G    A   ++ 
Sbjct: 174 ILYNVTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPNRAVEWFEK 233

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M   G+ PD V L+A+ID  G AG VE A  +   A+ +   +  +++S+L+     A N
Sbjct: 234 MPSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGN 293

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           +   L +YE MKS+ +KP +   N L+ ++    +  +   +  D+ S G  PN  TY+ 
Sbjct: 294 YDGCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAA 353

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 429
           L+ A  R    E  L++  Q K  G+   ++++  ++ MC+     ++A  + + + S  
Sbjct: 354 LIRAYGRARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCADIGYVDEAFEIFQDMKSSG 413

Query: 430 SGRPQIENKWTSLALM-VY-------------REAIVAGTIPTVEVVSKVLGCLQLPYNA 475
           +  P   + WT  +L+ VY             RE   AG  PT+ V++ ++ C       
Sbjct: 414 TCEP---DSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQV 470

Query: 476 DIRERLVEN---LGVSAD 490
           D   R  E    LG+  D
Sbjct: 471 DDVVRTFEQVLELGIEPD 488



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 146/371 (39%), Gaps = 69/371 (18%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +++ LIR     G    C+++ E+M+  G+     +Y+    ++ K+++  +       L
Sbjct: 280 TFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDL 339

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + N   P  ST+  L+     ++  E A  + R ++  G++    LY TL++ CA  G V
Sbjct: 340 ISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQMKGKGMELTVLLYNTLLSMCADIGYV 399

Query: 144 DAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           D  FE           +PD   F++LIT     G V  A   L EM       +P    +
Sbjct: 400 DEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMREA--GFEPTLFVL 457

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE----FACS--- 247
            +L++    A QVD     ++ + +  I+         +N  +QT   E      C    
Sbjct: 458 TSLIQCYGKAKQVDDVVRTFEQVLELGIEPDDRFCGCLLNVMTQTPKEEIGKLIGCVEKA 517

Query: 248 -----------VYDDMTKKGVIPDE--------------VFLSALIDFAGHAGKVEAAFE 282
                      V ++  ++GV+  E               +L+ LID   +  K+E A E
Sbjct: 518 KPKLGRVEKMLVEEENCEEGVLKKEASELIDSIGSDVNKAYLNCLIDLCVNLNKLEKACE 577

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT--- 339
           ILQ      I  G+ S S    +               H+KS+ L   ++ ++  +    
Sbjct: 578 ILQLGLEYDIYSGLQSKSDTQWSL--------------HLKSLSLGAALTALHVWMNDLS 623

Query: 340 --ALCDGDQLP 348
             AL  G++ P
Sbjct: 624 EAALTSGEEFP 634


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 137/282 (48%), Gaps = 4/282 (1%)

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
           F  +KP+ V  N LI    Q G +  AF V A++    +  +P+ IT   L+K     GQ
Sbjct: 115 FRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGY--NPNTITFTTLIKGLCLKGQ 172

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           + +A   +  +     +     Y   I+   + G+   A  +   +  K V P+ V  S 
Sbjct: 173 IHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYST 232

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           +ID       V  AF++  E  ++GIS  +++YS+L+         + A++L+  M S  
Sbjct: 233 IIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISEN 292

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           +KP V T N L+   C   ++   ++++ +M   G  PN +TYS +L A  +   V+  +
Sbjct: 293 IKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAV 352

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
            LL++ K+ G+ PN+  +  +I G+C S + E AR + E +L
Sbjct: 353 ALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLL 394



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/398 (21%), Positives = 165/398 (41%), Gaps = 25/398 (6%)

Query: 18  HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           H+N  +DV + +  +N L+RQ      I+  + +   G L   K YH   +       + 
Sbjct: 63  HSN--NDVDDAVSLFNCLLRQNPTPPAIEFNKIL---GSLVKSKHYHTVLY------LSK 111

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           K  FR  K    P L   N+L++          AF V   + + G   +   +TTLI   
Sbjct: 112 KMEFRGIK----PNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGL 167

Query: 138 AKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
              G++               + +++ +  LI    + G    A D+L  ++ ++  V P
Sbjct: 168 CLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKL--VQP 225

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           + +    ++        V+ A ++Y  +    I      Y+  I+     G  + A  ++
Sbjct: 226 NVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLF 285

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           + M  + + PD    + L+D    +GK+  A +++ E  ++G    I++YSS++ A    
Sbjct: 286 NKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKT 345

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
               KA+ L   +K   ++P + T   LI  LC   +L     +  D+   G     +TY
Sbjct: 346 HRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTY 405

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            ++     +K   +    LLS+ +E+G IP+   ++ I
Sbjct: 406 IVMFYGFCKKGLFDEASALLSKMEENGCIPDAKTYELI 443


>gi|307108031|gb|EFN56272.1| hypothetical protein CHLNCDRAFT_51958 [Chlorella variabilis]
          Length = 1271

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 152/328 (46%), Gaps = 16/328 (4%)

Query: 99   MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF------ENVKP 152
            +SV A     E A  V RL+ + G++     +  LI  C ++G+    F      + +  
Sbjct: 693  VSVAAKDGRLEDALAVYRLMLQDGVQPKAPTFNALIAACMRAGQPAKGFRFLEVMQGMGA 752

Query: 153  DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
            D V  + LI  C + G   RA DV   M  +   ++PD I    ++       Q DRA  
Sbjct: 753  DVVTVSTLIACCERLGDWQRARDVWQWMVDQG--LEPDTICYNTMISCMERCNQPDRALA 810

Query: 213  VYKMIHKYNIKGTPEVYTIAINCCSQTGDW---EFACSVYDDMTKKGVIPDEVFLSALID 269
            V++ + +  + G+   Y    +  ++ G+W     A  V + M  +G  P ++  + L+ 
Sbjct: 811  VFEQMSEAGVAGSSATYATLCDVFAKQGNWAKLRTAVQVKEWMEAQGEDPAQLTYAELMV 870

Query: 270  FAGHAGKVEAAFEILQEAKNQ----GISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
             A   G  + A E+ +  ++     G     ++YS+ + AC+   +WQ+A+EL + M + 
Sbjct: 871  RASEGGNWKRALELFEGMESSLTISGSQPNAVTYSAAIIACARLADWQRAVELKDQMLAR 930

Query: 326  KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD-DVEV 384
             L  +    N+++ A     QL   +++L +M+  G+  +  TYS L+  C   +  +  
Sbjct: 931  GLPASPIVYNSVLAACEASRQLDAALDLLDEMRVAGVPRDQYTYSTLMSCCYHGEGHLGP 990

Query: 385  GLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
             + L  + +E+G+ PN+V+   ++ +C+
Sbjct: 991  AMRLFQEMQEEGLTPNIVVVNALLSVCA 1018



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 183/433 (42%), Gaps = 30/433 (6%)

Query: 20   NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
            NY  D   Q  + +   + GR+ + + +   M + G+      ++A     C       +
Sbjct: 682  NY-RDTHVQTVAVSVAAKDGRLEDALAVYRLMLQDGVQPKAPTFNA-LIAACMRAGQPAK 739

Query: 80   AFRFFKLVPN--PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-- 135
             FRF +++      + T + L++ C    D + A  V + + + GL+ D   Y T+I+  
Sbjct: 740  GFRFLEVMQGMGADVVTVSTLIACCERLGDWQRARDVWQWMVDQGLEPDTICYNTMISCM 799

Query: 136  -TCAKSGKVDAMFENVKPDRVVFNALITAC--------GQSGAVDRAFDVLAEMNAEVHP 186
              C +  +  A+FE +    V  ++   A         G    +  A  V   M A+   
Sbjct: 800  ERCNQPDRALAVFEQMSEAGVAGSSATYATLCDVFAKQGNWAKLRTAVQVKEWMEAQGE- 858

Query: 187  VDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPE---VYTIAINCCSQTGDW 242
             DP  +T   LM   +  G   RA E+++ M     I G+      Y+ AI  C++  DW
Sbjct: 859  -DPAQLTYAELMVRASEGGNWKRALELFEGMESSLTISGSQPNAVTYSAAIIACARLADW 917

Query: 243  EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
            + A  + D M  +G+    +  ++++     + +++AA ++L E +  G+     +YS+L
Sbjct: 918  QRAVELKDQMLARGLPASPIVYNSVLAACEASRQLDAALDLLDEMRVAGVPRDQYTYSTL 977

Query: 303  MGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCD-GDQLPKTMEVLSDMKSL 360
            M  C + + +   A+ L++ M+   L P +  +NAL++     GD    +        +L
Sbjct: 978  MSCCYHGEGHLGPAMRLFQEMQEEGLTPNIVVVNALLSVCATVGDADAASRVYRHATGAL 1037

Query: 361  GLCPNTITYSILLVACERKDDVEVGLMLLSQA-KEDGVIPNLVMFKCIIGMCSRRYEKAR 419
            G+  + IT   ++    R      GL   + + +E G       ++ ++ +   + + A 
Sbjct: 1038 GMPADEITMHCMMEVIGRAGRWAEGLAFFAASYREQGS------YRGVLQLDLSKPDTAA 1091

Query: 420  TLNEHVLSFNSGR 432
             L+ H LS    R
Sbjct: 1092 QLDLHFLSVVGAR 1104



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 122/332 (36%), Gaps = 71/332 (21%)

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           GV  D      ++D    AGK E    ++QE + +G+    ++++ L+ A   A  W++A
Sbjct: 465 GVELDRGMWQHVLDVCAKAGKAEVVLAMMQEMEARGLPPDSVAHTILVMAHEKAGAWREA 524

Query: 316 LELYEHMKSIKLK----------------------------------------------- 328
           L  Y HM+   L+                                               
Sbjct: 525 LAAYRHMRDRGLERNSFTYRRALAGSGPGPAFLWAGGGAAAGGSAGRNPQSGCQASPVSP 584

Query: 329 ----PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
               P  +   AL++AL   D+L    EVL  M   G+  N + Y  L+ A   +D  + 
Sbjct: 585 RLASPAHAACLALVSALVGADRLGDACEVLDWMADDGVAGNAVVYQTLINAFLERDRQDK 644

Query: 385 GLMLLSQAKED--GVIPNLVMFKCII--------GMCSRRYEKARTLNEHVLSFNSGRPQ 434
              LL + + D  G  P    +  ++        G+ + R    +T+   V +   GR  
Sbjct: 645 VDWLLERMRRDGRGRAPGAARWPAVLRIIHGMQMGLPNYRDTHVQTVAVSVAA-KDGR-- 701

Query: 435 IENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADIRERLVENLGVSADALK 493
           +E+     AL VYR  +  G  P     + ++  C++    A     L    G+ AD + 
Sbjct: 702 LED-----ALAVYRLMLQDGVQPKAPTFNALIAACMRAGQPAKGFRFLEVMQGMGADVVT 756

Query: 494 RSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
            S L +  +  G++  RA  + +     G+ P
Sbjct: 757 VSTLIACCERLGDWQ-RARDVWQWMVDQGLEP 787


>gi|358347154|ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503561|gb|AES84764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 989

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 111/457 (24%), Positives = 195/457 (42%), Gaps = 55/457 (12%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN 96
           R G+++E   L  +M   GL D + V +A   N       + EAF    L     +   +
Sbjct: 368 RHGKLTEAAVLFREMYEMGL-DPNHVSYATIINSLFKSGRVMEAF---NLQSQMVVRGIS 423

Query: 97  MLMSVCASSKD-------SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--- 146
             +  C +  D       ++ A +V   + +  L  +C  Y+ L+    K GK++     
Sbjct: 424 FDIVTCTTVMDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELV 483

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E+V P+ + F+++I    + G + +A DVL EM      V P+ I    L+   
Sbjct: 484 LQKMEKEHVPPNVITFSSIINGYAKKGMLSKAVDVLREMVQ--RNVMPNTIVYAILIDGY 541

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AG+ D A +  K +    ++ +  ++ I +N   + G  + A S+  DM  KG+ PD 
Sbjct: 542 FKAGEQDVADDFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYSKGIDPDI 601

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  ++LID     G   AA  I+QE K + I   +++Y++L+        +     +   
Sbjct: 602 VNYASLIDGYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRY-VCSR 660

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M  + L P   T N +I   C   +    +++L++MKS G+ PN +TY+IL+        
Sbjct: 661 MIELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKSYGIMPNAVTYNILI-------- 712

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 441
              GL       + G +P  +  K ++   SR  +  + L            QI  K  +
Sbjct: 713 --GGLC------KTGFVPTPITHKFLVKAYSRSEKADKIL------------QIHEKLVA 752

Query: 442 LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR 478
             L + R+ +V       E+V + +    + YNA IR
Sbjct: 753 SGLELKRQKVVLD-----EMVKRGISADLVTYNALIR 784



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 149/392 (38%), Gaps = 91/392 (23%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L R GR+ E   L+ DM  KG+ D D V +A   +             +FK       
Sbjct: 574 NNLKRVGRMDEARSLIIDMYSKGI-DPDIVNYASLID------------GYFK------- 613

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA------M 146
                         +   A  +++ ++E  ++ D   Y  LI    + GK D       M
Sbjct: 614 ------------EGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRM 661

Query: 147 FE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
            E  + PD + +N +I      G  + A D+L EM +  + + P+ +T   L+      G
Sbjct: 662 IELGLAPDCITYNTIINTYCIKGKTEDALDILNEMKS--YGIMPNAVTYNILIGGLCKTG 719

Query: 206 QVDRAREVYKMIHKYNIKG------TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            V        + HK+ +K         ++  I     +   + +    V D+M K+G+  
Sbjct: 720 FVPTP-----ITHKFLVKAYSRSEKADKILQIHEKLVASGLELKRQKVVLDEMVKRGISA 774

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK--------- 310
           D V  +ALI        VE A +   +    GI+  I +Y++L+G  SNA          
Sbjct: 775 DLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAGLMEEMMEET 834

Query: 311 ------------------------------NWQKALELYEHMKSIKLKPTVSTMNALITA 340
                                         N +K + L+  M +    PT+ T N LI+ 
Sbjct: 835 EKLVSEMNERGLVPNAATYDILVSGYGRVGNRKKTIILHIEMITKGFVPTLKTYNVLISD 894

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
                ++ +  E+L+D+ + G  PN+ TY IL
Sbjct: 895 YAKSGKMIEARELLNDLLTKGRIPNSFTYDIL 926



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 177/398 (44%), Gaps = 29/398 (7%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           +N++P  V +  LI A  +   V+ +  +  +M   ++ + PD +T  +++      G++
Sbjct: 315 KNLQPTLVTYTTLIAAYCKFVGVEESHSLYKKM--IMNGIMPDVVTCSSILYGFCRHGKL 372

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             A  +++ +++  +      Y   IN   ++G    A ++   M  +G+  D V  + +
Sbjct: 373 TEAAVLFREMYEMGLDPNHVSYATIINSLFKSGRVMEAFNLQSQMVVRGISFDIVTCTTV 432

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIK 326
           +D     GK + A E+ +      ++   ++YS+L+ G C   K     L L + M+   
Sbjct: 433 MDGLFKVGKTKEAEEVFETILKLNLAPNCVTYSALLDGYCKLGKMELAELVL-QKMEKEH 491

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           + P V T +++I        L K ++VL +M    + PNTI Y+IL+    +  + +V  
Sbjct: 492 VPPNVITFSSIINGYAKKGMLSKAVDVLREMVQRNVMPNTIVYAILIDGYFKAGEQDVAD 551

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLAL 444
               + K   +  + V+F  ++    R  R ++AR+L   + S     P I N + SL  
Sbjct: 552 DFCKEMKSRRLEESNVIFDILLNNLKRVGRMDEARSLIIDMYS-KGIDPDIVN-YASLID 609

Query: 445 MVYREAIVAGTIPTV-EVVSKVLGCLQLPYNADIR--------------ERLVENLGVSA 489
             ++E      +  V E+  K +    + YNA I+               R++E LG++ 
Sbjct: 610 GYFKEGNQLAALSIVQEMKEKNIRFDVVAYNALIKGLLRLGKYDPRYVCSRMIE-LGLAP 668

Query: 490 DALKRSNLCSL--IDGFGEYDPRAFSLLEEAASFGIVP 525
           D +  + + +   I G  E    A  +L E  S+GI+P
Sbjct: 669 DCITYNTIINTYCIKGKTE---DALDILNEMKSYGIMP 703


>gi|298712094|emb|CBJ26674.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 838

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 127/266 (47%), Gaps = 3/266 (1%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           F   +T  G+ G        L EM +     D    T+   +KA  + G+ + A ++ + 
Sbjct: 39  FMRRMTEAGKRGRWRDVVPALEEMRSLGLVTDGRPYTVA--IKALGDNGKTEEALKLLES 96

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAG 275
           + +  I      YT A + C++TGDW+ A  +   M +K G+ P+E   +A +   G  G
Sbjct: 97  MREGRIPPNEFSYTAAASACAKTGDWKGALRLLGQMREKDGLEPNEFTYTAAVTACGRGG 156

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
            +EAA  +L   + +G+S    +Y+S + AC+    W+ ALEL E MK+  + P ++T +
Sbjct: 157 NLEAALSLLDGMRGKGVSPNCFTYNSAIHACARKGKWKLALELIERMKADGVTPNLTTYS 216

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
           +   A   G      +++L +++SL      I Y+ ++ AC      ++ L LL   ++D
Sbjct: 217 SAADACAKGGNCVAALKILEEVRSLDFEVGEILYNSVMEACAAVGQTKLSLSLLETMRKD 276

Query: 396 GVIPNLVMFKCIIGMCSRRYEKARTL 421
           GV P+   +   I  C R  +  R L
Sbjct: 277 GVKPSPATYTTAITACGRTADWKRAL 302



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 153/349 (43%), Gaps = 32/349 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + ++N  +S C      + A  +L  +  AGLK DC  Y++ I  CA + + +     
Sbjct: 467 PDVVSYNSAISACGYRAKWDKAAGLLAELWLAGLKPDCYSYSSAIHACAGASRWEEAMSL 526

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE---------------VHP 186
                   + P+ V + A ++A       + A ++L E N                  HP
Sbjct: 527 LREMKAVGLGPNVVAYGAAMSALANGKQWEVALELLDEANLLFCCWCCCLFVWEKVCAHP 586

Query: 187 VD----PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTG 240
            D    P+ +  GA ++AC+ AG+     E+ + +H  +   TP +  Y  A++  +  G
Sbjct: 587 EDSGIRPNAVLYGAAIRACSGAGKWRVGLELLENMHTASGV-TPSLVCYNAALHGMASAG 645

Query: 241 DWEFACSVYDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
           + + A  + + M +   I  PD    ++ I   G  G+V  A  +L+  + +G    + S
Sbjct: 646 EGKRARDLIETMQRGPRITRPDHYSYNSAIAACGPGGEVAEARALLECMRQRGTPPDVFS 705

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           ++ +M A     +W  ALEL E MKS  L P V++ N  + A   G Q    M++L +M 
Sbjct: 706 FNGVMQANVWGGDWAAALELLEEMKSEGLMPDVTSFNIAVHACAVGCQWQAAMDLLDEMA 765

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
             GL  +  TY+  + AC    +    + L+ Q ++ G+   +  +  I
Sbjct: 766 EAGLAMDAFTYAHAIEACCNGGNRMTAVALVRQLRDKGMPLRMATYTAI 814



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 114/243 (46%), Gaps = 3/243 (1%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-R 211
           D   +   I A G +G  + A  +L  M     P  P+  +  A   ACA  G    A R
Sbjct: 70  DGRPYTVAIKALGDNGKTEEALKLLESMREGRIP--PNEFSYTAAASACAKTGDWKGALR 127

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            + +M  K  ++     YT A+  C + G+ E A S+ D M  KGV P+    ++ I   
Sbjct: 128 LLGQMREKDGLEPNEFTYTAAVTACGRGGNLEAALSLLDGMRGKGVSPNCFTYNSAIHAC 187

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              GK + A E+++  K  G++  + +YSS   AC+   N   AL++ E ++S+  +   
Sbjct: 188 ARKGKWKLALELIERMKADGVTPNLTTYSSAADACAKGGNCVAALKILEEVRSLDFEVGE 247

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
              N+++ A     Q   ++ +L  M+  G+ P+  TY+  + AC R  D +  L+LL +
Sbjct: 248 ILYNSVMEACAAVGQTKLSLSLLETMRKDGVKPSPATYTTAITACGRTADWKRALLLLVE 307

Query: 392 AKE 394
            ++
Sbjct: 308 MRK 310



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 146/357 (40%), Gaps = 36/357 (10%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-- 145
           P+   +  N  +++C  +   +    +L  +   G+  D   Y + I+ C    K D   
Sbjct: 430 PDGRGAASNAALTLCGKAGRWDPPRGLLEEMPSYGIMPDVVSYNSAISACGYRAKWDKAA 489

Query: 146 ------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                     +KPD   +++ I AC  +   + A  +L EM A    + P+ +  GA M 
Sbjct: 490 GLLAELWLAGLKPDCYSYSSAIHACAGASRWEEAMSLLREMKAV--GLGPNVVAYGAAMS 547

Query: 200 ACANAGQVDRARE-----------------VYKMIHKY----NIKGTPEVYTIAINCCSQ 238
           A AN  Q + A E                 V++ +  +     I+    +Y  AI  CS 
Sbjct: 548 ALANGKQWEVALELLDEANLLFCCWCCCLFVWEKVCAHPEDSGIRPNAVLYGAAIRACSG 607

Query: 239 TGDWEFACSVYDDM-TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--- 294
            G W     + ++M T  GV P  V  +A +     AG+ + A +++ E   +G  +   
Sbjct: 608 AGKWRVGLELLENMHTASGVTPSLVCYNAALHGMASAGEGKRARDLI-ETMQRGPRITRP 666

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
              SY+S + AC       +A  L E M+     P V + N ++ A   G      +E+L
Sbjct: 667 DHYSYNSAIAACGPGGEVAEARALLECMRQRGTPPDVFSFNGVMQANVWGGDWAAALELL 726

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
            +MKS GL P+  +++I + AC      +  + LL +  E G+  +   +   I  C
Sbjct: 727 EEMKSEGLMPDVTSFNIAVHACAVGCQWQAAMDLLDEMAEAGLAMDAFTYAHAIEAC 783



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/374 (21%), Positives = 151/374 (40%), Gaps = 37/374 (9%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC----KSQKAIKEAFRFFKLVPNPTL 92
           + GR      LLE+M   G++  D V +    + C    K  KA       +     P  
Sbjct: 446 KAGRWDPPRGLLEEMPSYGIMP-DVVSYNSAISACGYRAKWDKAAGLLAELWLAGLKPDC 504

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---- 148
            +++  +  CA +   E A  +LR ++  GL  +   Y   ++  A   + +   E    
Sbjct: 505 YSYSSAIHACAGASRWEEAMSLLREMKAVGLGPNVVAYGAAMSALANGKQWEVALELLDE 564

Query: 149 -------------------------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
                                     ++P+ V++ A I AC  +G      ++L  M+  
Sbjct: 565 ANLLFCCWCCCLFVWEKVCAHPEDSGIRPNAVLYGAAIRACSGAGKWRVGLELLENMHT- 623

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGD 241
              V P  +   A +   A+AG+  RAR++ + + +      P+ Y+   AI  C   G+
Sbjct: 624 ASGVTPSLVCYNAALHGMASAGEGKRARDLIETMQRGPRITRPDHYSYNSAIAACGPGGE 683

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
              A ++ + M ++G  PD    + ++      G   AA E+L+E K++G+   + S++ 
Sbjct: 684 VAEARALLECMRQRGTPPDVFSFNGVMQANVWGGDWAAALELLEEMKSEGLMPDVTSFNI 743

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
            + AC+    WQ A++L + M    L     T    I A C+G      + ++  ++  G
Sbjct: 744 AVHACAVGCQWQAAMDLLDEMAEAGLAMDAFTYAHAIEACCNGGNRMTAVALVRQLRDKG 803

Query: 362 LCPNTITYSILLVA 375
           +     TY+ +  A
Sbjct: 804 MPLRMATYTAITEA 817



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 139/328 (42%), Gaps = 47/328 (14%)

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
           A+  C + G W+    + ++M   G++PD V  ++ I   G+  K + A  +L E    G
Sbjct: 440 ALTLCGKAGRWDPPRGLLEEMPSYGIMPDVVSYNSAISACGYRAKWDKAAGLLAELWLAG 499

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           +     SYSS + AC+ A  W++A+ L   MK++ L P V    A ++AL +G Q    +
Sbjct: 500 LKPDCYSYSSAIHACAGASRWEEAMSLLREMKAVGLGPNVVAYGAAMSALANGKQWEVAL 559

Query: 352 EVLSDMKSL---------------------GLCPNTITYSILLVACERKDDVEVGLMLLS 390
           E+L +   L                     G+ PN + Y   + AC       VGL LL 
Sbjct: 560 ELLDEANLLFCCWCCCLFVWEKVCAHPEDSGIRPNAVLYGAAIRACSGAGKWRVGLELLE 619

Query: 391 QA-KEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVY 447
                 GV P+LV +   + GM S    ++AR L E   +   G P+I    T      Y
Sbjct: 620 NMHTASGVTPSLVCYNAALHGMASAGEGKRARDLIE---TMQRG-PRI----TRPDHYSY 671

Query: 448 REAIVA-GTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 506
             AI A G    V     +L C+        R+R       S + + ++N+      +G 
Sbjct: 672 NSAIAACGPGGEVAEARALLECM--------RQRGTPPDVFSFNGVMQANV------WGG 717

Query: 507 YDPRAFSLLEEAASFGIVPCVSFKEIPV 534
               A  LLEE  S G++P V+   I V
Sbjct: 718 DWAAALELLEEMKSEGLMPDVTSFNIAV 745



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/230 (24%), Positives = 98/230 (42%), Gaps = 16/230 (6%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-----PTL 92
            G+  E + LLE M R+G +  ++  +    + C      K A R    +       P  
Sbjct: 84  NGKTEEALKLLESM-REGRIPPNEFSYTAAASACAKTGDWKGALRLLGQMREKDGLEPNE 142

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---- 148
            T+   ++ C    + E A  +L  ++  G+  +C  Y + I  CA+ GK     E    
Sbjct: 143 FTYTAAVTACGRGGNLEAALSLLDGMRGKGVSPNCFTYNSAIHACARKGKWKLALELIER 202

Query: 149 ----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                V P+   +++   AC + G    A  +L E+ +    V    I   ++M+ACA  
Sbjct: 203 MKADGVTPNLTTYSSAADACAKGGNCVAALKILEEVRSLDFEV--GEILYNSVMEACAAV 260

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           GQ   +  + + + K  +K +P  YT AI  C +T DW+ A  +  +M K
Sbjct: 261 GQTKLSLSLLETMRKDGVKPSPATYTTAITACGRTADWKRALLLLVEMRK 310



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/238 (19%), Positives = 108/238 (45%), Gaps = 11/238 (4%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF------- 147
           + + +     +  +E A ++L  ++E  +  +   YT   + CAK+G             
Sbjct: 74  YTVAIKALGDNGKTEEALKLLESMREGRIPPNEFSYTAAASACAKTGDWKGALRLLGQMR 133

Query: 148 --ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             + ++P+   + A +TACG+ G ++ A  +L  M  +   V P+  T  + + ACA  G
Sbjct: 134 EKDGLEPNEFTYTAAVTACGRGGNLEAALSLLDGMRGK--GVSPNCFTYNSAIHACARKG 191

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +   A E+ + +    +      Y+ A + C++ G+   A  + +++        E+  +
Sbjct: 192 KWKLALELIERMKADGVTPNLTTYSSAADACAKGGNCVAALKILEEVRSLDFEVGEILYN 251

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
           ++++     G+ + +  +L+  +  G+     +Y++ + AC    +W++AL L   M+
Sbjct: 252 SVMEACAAVGQTKLSLSLLETMRKDGVKPSPATYTTAITACGRTADWKRALLLLVEMR 309



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 21/169 (12%)

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           +A +   G AG+ +    +L+E  + GI   ++SY+S + AC     W KA  L   +  
Sbjct: 438 NAALTLCGKAGRWDPPRGLLEEMPSYGIMPDVVSYNSAISACGYRAKWDKAAGLLAELWL 497

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             LKP   + ++ I A     +  + M +L +MK++GL PN + Y   + A       EV
Sbjct: 498 AGLKPDCYSYSSAIHACAGASRWEEAMSLLREMKAVGLGPNVVAYGAAMSALANGKQWEV 557

Query: 385 GLMLLSQA---------------------KEDGVIPNLVMFKCIIGMCS 412
            L LL +A                     ++ G+ PN V++   I  CS
Sbjct: 558 ALELLDEANLLFCCWCCCLFVWEKVCAHPEDSGIRPNAVLYGAAIRACS 606


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 173/387 (44%), Gaps = 48/387 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           + L + G  +E +D+  +M   G+L    VY +    +C+  + +KEA  FFK       
Sbjct: 154 DSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGR-LKEALEFFK------- 205

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAMFENV 150
                         + EG           G+ AD   Y +LI   +++G  K    F N+
Sbjct: 206 --------------EMEGR----------GISADVYTYNSLIHGLSRAGLWKEVTWFLNL 241

Query: 151 ------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                  PD   F  LI    + G V  A  +L  M+ +    +PD +T   LM      
Sbjct: 242 MVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGK--EPDILTYNTLMNGLCLV 299

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           GQ++ A ++++ +    IK     Y I IN  C  Q  D  F   ++++M  KG+ P  V
Sbjct: 300 GQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAF--RLFEEMRPKGLKPSTV 357

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEH 321
             + LI     +G+V  A ++  E +  G  + + +Y  L+ G C N  + ++A++L++ 
Sbjct: 358 TYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNG-HLEEAIDLFQS 416

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +K  + KP +   + L+  +C   +L +  +   ++   GL P+TI Y+IL+     K  
Sbjct: 417 IKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGM 476

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +   + LL Q +E G +P+ + F  II
Sbjct: 477 LSEAVKLLWQMEEKGCLPDSITFNVII 503



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 165/376 (43%), Gaps = 17/376 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L R GR+ E ++  ++ME +G+      Y++    + ++    KE   F  L+ +    P
Sbjct: 191 LCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRA-GLWKEVTWFLNLMVDRGFSP 249

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
              TF +L+  +C   K  E A Q+L L+   G + D   Y TL+      G+++    +
Sbjct: 250 DAFTFTILIDGLCKEGKVGE-AQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKL 308

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE+     +K +   +N LI    +   +D AF +  EM  +   + P  +T   L+ A 
Sbjct: 309 FESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPK--GLKPSTVTYNTLIGAL 366

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             +G+V  A++++  +           Y + ++   + G  E A  ++  + K    P+ 
Sbjct: 367 CQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNI 426

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              S L+D    AGK+E A++   E    G+    I+Y+ L+    N     +A++L   
Sbjct: 427 EVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQ 486

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+     P   T N +I  L   +++ + +++L +M++    P+    S+LL        
Sbjct: 487 MEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQ 546

Query: 382 VEVGLMLLSQAKEDGV 397
               L+ L  A + GV
Sbjct: 547 WHAALVSLPNALQKGV 562



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 142/355 (40%), Gaps = 28/355 (7%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           +PD V    L+        +  A  +  EM  +   +  D  T G L+     A +   A
Sbjct: 74  EPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEK--GLFGDAKTYGILINGLCKARKTGLA 131

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            ++++ + K N KG    Y + I+   + G    A  ++ +M   G++PD V  S+L+D 
Sbjct: 132 IKLHEKM-KGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDG 190

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G+++ A E  +E + +GIS  + +Y+SL+   S A  W++       M      P 
Sbjct: 191 LCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPD 250

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
             T   LI  LC   ++ +  ++L  M   G  P+ +TY+ L+        +E    L  
Sbjct: 251 AFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFE 310

Query: 391 QAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 449
              + G+  N+  +  +I G C     K + ++E    F   RP+               
Sbjct: 311 SLADRGIKLNVFSYNILINGYC-----KDQKIDEAFRLFEEMRPK--------------- 350

Query: 450 AIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
               G  P+    + ++G L         ++L   +      LK S  C L+DG 
Sbjct: 351 ----GLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGL 401



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 105/245 (42%), Gaps = 19/245 (7%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           + SYN LI    +  +I E   L E+M  KGL      Y+     +C+S + ++ A + F
Sbjct: 321 VFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGR-VRTAQKLF 379

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +        LST+ +L+     +   E A  + + +++   K + ++++ L+    ++
Sbjct: 380 VEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRA 439

Query: 141 GKVDAMFEN--------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           GK++  ++         ++PD + +N LI      G +  A  +L +M  E     PD I
Sbjct: 440 GKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQM--EEKGCLPDSI 497

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   +++      ++  A ++ + +   N      V ++ +   S    W  A     + 
Sbjct: 498 TFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNA 557

Query: 253 TKKGV 257
            +KGV
Sbjct: 558 LQKGV 562



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 1/160 (0%)

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           K+G  PD V ++ L+        +  A ++  E   +G+     +Y  L+     A+   
Sbjct: 70  KRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTG 129

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A++L+E MK    K  V T   +I +LC      + +++ S+M   G+ P+ + YS L+
Sbjct: 130 LAIKLHEKMKG-NCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 188

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
               R   ++  L    + +  G+  ++  +  +I   SR
Sbjct: 189 DGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSR 228


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 160/359 (44%), Gaps = 49/359 (13%)

Query: 71  CKSQKAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
           C+  +A++   R  ++   PTL T N L++ +C + K S+    + R+V E G + +   
Sbjct: 172 CRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMV-ETGFQPNEVT 230

Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y  ++    KSG+     E        N+K D V ++ +I    + G++D AF++  EM 
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM- 289

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
            E+     D IT   L+    NAG+                                   
Sbjct: 290 -EIKGFKADIITYNTLIGGFCNAGR----------------------------------- 313

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
           W+    +  DM K+ + P+ V  S LID     GK+  A ++L+E   +GI+   I+Y+S
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNS 373

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+         ++A+++ + M S    P + T N LI   C  +++   +E+  +M   G
Sbjct: 374 LIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 418
           +  NT+TY+ L+    +   +EV   L  +     V P++V +K ++ G+C     EKA
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKA 492



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 145/333 (43%), Gaps = 11/333 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P PT+  FN L S  A +K  E    + + ++  G+       + +I    +  K+   F
Sbjct: 84  PLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAF 143

Query: 148 ENV--------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             +        +PD V+FN L+        V  A +++  M    H   P  IT+  L+ 
Sbjct: 144 STMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK--PTLITLNTLVN 201

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G+V  A  +   + +   +     Y   +N   ++G    A  +   M ++ +  
Sbjct: 202 GLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL 261

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  S +ID     G ++ AF +  E + +G    II+Y++L+G   NA  W    +L 
Sbjct: 262 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLL 321

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M   K+ P V T + LI +     +L +  ++L +M   G+ PNTITY+ L+    ++
Sbjct: 322 RDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKE 381

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + +E  + ++      G  P+++ F  +I G C
Sbjct: 382 NRLEEAIQMVDLMISKGCDPDIMTFNILINGYC 414



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 171/393 (43%), Gaps = 17/393 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N + + G+ +  ++LL  ME + +  +D V ++   +      ++  AF  F  +     
Sbjct: 236 NVMCKSGQTALAMELLRKMEERNI-KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF 294

Query: 89  NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
              + T+N L+   C + +  +GA ++LR + +  +  +   ++ LI +  K GK+    
Sbjct: 295 KADIITYNTLIGGFCNAGRWDDGA-KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353

Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
               + M   + P+ + +N+LI    +   ++ A  ++  M ++    DPD +T   L+ 
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISK--GCDPDIMTFNILIN 411

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               A ++D   E+++ +    +      Y   +    Q+G  E A  ++ +M  + V P
Sbjct: 412 GYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP 471

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V    L+D     G++E A EI  + +   + + I  Y  ++    NA     A +L+
Sbjct: 472 DIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF 531

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             +    +K      N +I+ LC  D L K   +   M   G  P+ +TY+IL+ A    
Sbjct: 532 CSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGD 591

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           DD      L+ + K  G   ++   K +I M S
Sbjct: 592 DDATTAAELIEEMKSSGFPADVSTVKMVINMLS 624



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 149/340 (43%), Gaps = 52/340 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           +  +++G++ E   LL++M ++G+      Y++     CK  + ++EA +   L+     
Sbjct: 341 DSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENR-LEEAIQMVDLMISKGC 399

Query: 89  NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-- 145
           +P + TFN+L++  C +++  +G  ++ R +   G+ A+   Y TL+    +SGK++   
Sbjct: 400 DPDIMTFNILINGYCKANRIDDG-LELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAK 458

Query: 146 -MFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            +F+      V+PD V +  L+     +G +++A ++  ++      +D     I  ++ 
Sbjct: 459 KLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMI--IIH 516

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              NA +VD A +++  +    +K     Y I I+   +      A  ++  MT++G  P
Sbjct: 517 GMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAP 576

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           DE+  + LI    H G  +A                                   A EL 
Sbjct: 577 DELTYNILI--RAHLGDDDAT---------------------------------TAAELI 601

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           E MKS      VST+  +I  L  G+     +++LS  ++
Sbjct: 602 EEMKSSGFPADVSTVKMVINMLSSGELDKSFLDMLSTTRA 641



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 4/240 (1%)

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
           D A D+  +M  +  P+ P  I    L  A A   Q +    + K +    I  +    +
Sbjct: 70  DDAVDLFRDM-IQSRPL-PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
           I INC  +     +A S    + K G  PD V  + L++      +V  A E++      
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM 187

Query: 291 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           G    +I+ ++L+ G C N K    A+ L + M     +P   T   ++  +C   Q   
Sbjct: 188 GHKPTLITLNTLVNGLCLNGK-VSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTAL 246

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            ME+L  M+   +  + + YSI++    +   ++    L ++ +  G   +++ +  +IG
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIG 306


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 188/455 (41%), Gaps = 30/455 (6%)

Query: 28  QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           ++    RLIR G + E    LE M  KG         A     CK  +  K A +   ++
Sbjct: 82  EIRHLRRLIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRT-KNASQIMGIL 140

Query: 88  PNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                   ++++N+L+S    S + E   + LR++   G+  +   Y  ++ +    GK+
Sbjct: 141 EESGAVIDVTSYNVLISGYCKSGEIE---EALRVLDRMGVSPNAATYDAVLCSLCDRGKL 197

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
               +           PD V    LI A  +   V +A  +  EM  +     PD +T  
Sbjct: 198 KQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNK--GCKPDVVTYN 255

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            L+K     G++D A    K +  Y  +     + + +      G W  A  +   M +K
Sbjct: 256 VLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRK 315

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G +P  V  + LI+F    G +  A  +L+     G +    S++ L+    N K   +A
Sbjct: 316 GCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRA 375

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           +E  E M S    P + T N L+TALC   ++   + +LS + S G  P+ I+Y+ ++  
Sbjct: 376 IEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDG 435

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----------RYEKARTLNEH 424
             +    E+ + LL +    G+ P+L+    ++G  SR            Y K   +  +
Sbjct: 436 LLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPN 495

Query: 425 VLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPT 458
              +NS    + +++ TSLA+    + +  G  PT
Sbjct: 496 AFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPT 530



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/316 (24%), Positives = 144/316 (45%), Gaps = 17/316 (5%)

Query: 71  CKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKA 125
           CK +  + +A + F  + N    P + T+N+L+   C   +  E A + L+ +   G + 
Sbjct: 227 CK-ESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDE-AIRFLKKLPSYGCQP 284

Query: 126 DCKLYTTLITTCAKSGK-VDAM-------FENVKPDRVVFNALITACGQSGAVDRAFDVL 177
           D   +  ++ +    G+ +DAM        +   P  V FN LI    Q G + +A +VL
Sbjct: 285 DVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVL 344

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
             M    H   P+  +   L++   N   +DRA E  +++           Y I +    
Sbjct: 345 EMMPKHGHT--PNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALC 402

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           + G  + A  +   ++ KG  P  +  + +ID     GK E A E+L+E   +G+   +I
Sbjct: 403 KDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLI 462

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           + +S++G  S     ++A++ + ++K   ++P     N++IT LC   Q    ++ L+DM
Sbjct: 463 TCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADM 522

Query: 358 KSLGLCPNTITYSILL 373
            + G  P   TY+ L+
Sbjct: 523 VAKGCKPTEATYTTLI 538



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 162/396 (40%), Gaps = 26/396 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAFRF 83
           SYN LI    + G I E + +L+ M   G+      Y A   ++C   K ++A++   R 
Sbjct: 151 SYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQ 207

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKADCKLYTTLITTCAKS 140
            +    P + T  +L+   A+ K+S G  Q ++L  E    G K D   Y  LI    K 
Sbjct: 208 LQSKCYPDVVTCTVLID--ATCKES-GVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKG 264

Query: 141 GKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G++D     +K        PD +  N ++ +    G    A  +LA M  +     P  +
Sbjct: 265 GRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRK--GCLPSVV 322

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+      G + +A  V +M+ K+        +   I         + A    + M
Sbjct: 323 TFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIM 382

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             +G  PD V  + L+      GKV+ A  IL +  ++G S  +ISY++++         
Sbjct: 383 VSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKA 442

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           + A+EL E M    LKP + T  +++  L    ++ + M+    +K   + PN   Y+ +
Sbjct: 443 ELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSI 502

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +    +     + +  L+     G  P    +  +I
Sbjct: 503 ITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLI 538


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 179/389 (46%), Gaps = 17/389 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L  +GR++E + L++ M + G    +  Y      +CKS      A   F+ +   ++
Sbjct: 182 NGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNT-ALALDLFRKMEERSI 240

Query: 93  STFNMLMSVCASSKDSEG----AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
               +  S+   S   +G    A  +   ++  G+KAD   Y+++I      G+ D    
Sbjct: 241 KASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAK 300

Query: 145 ----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                +  N+ P+ V F+ALI    + G +  A ++  EM A    + PD IT  +L+  
Sbjct: 301 MLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVA--RGIAPDTITYSSLIDG 358

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                ++  A ++  ++     +     Y+I IN   +    +    ++ +++ KG++ D
Sbjct: 359 FCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVAD 418

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 319
            V  + L+     +GK+  A E+ QE  ++G+   +++Y  L+ G C N +  QKALE++
Sbjct: 419 TVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE-LQKALEIF 477

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E M+  ++   +   N +I  +C+  ++     +   +   G+ P+ +TY++++    +K
Sbjct: 478 EKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKK 537

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             +    ML  + KEDG  P+   +  +I
Sbjct: 538 GSLSEADMLFRKMKEDGCAPSDCTYNILI 566



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 196/425 (46%), Gaps = 29/425 (6%)

Query: 25  VSEQLHSYNRLIRQG----RISECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKA 76
           +SE   SY   +R G    +++E IDL E M +      L+D  K++ A        +K 
Sbjct: 30  ISEAKVSYKERLRNGIVDIKVNEAIDLFESMIQSRPLPSLIDFSKLFSA-----VARRKE 84

Query: 77  IKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
                 F K +        + T N++++     +    AF V+    + G + +   ++T
Sbjct: 85  YDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFST 144

Query: 133 LITTCAKSGKV-------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           LI      G+V       D M E   +P+ V  N LI      G V  A  ++  M    
Sbjct: 145 LINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVK-- 202

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
           +  + + IT G ++     +G    A ++++ + + +IK +   Y+I I+   + G+ + 
Sbjct: 203 YGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVIDSLCKDGNLDD 262

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A S++++M  KG+  D V  S++I    + G+ +   ++L+E   + I   ++++S+L+ 
Sbjct: 263 ALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALID 322

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                    +A ELY  M +  + P   T ++LI   C  ++L +  ++L  M S G  P
Sbjct: 323 VFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEP 382

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLN 422
           N +TYSIL+ +  +   V+ G+ L  +    G++ + V +  ++ G C S +   A+ L 
Sbjct: 383 NIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELF 442

Query: 423 EHVLS 427
           + ++S
Sbjct: 443 QEMVS 447



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/274 (24%), Positives = 130/274 (47%), Gaps = 13/274 (4%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMF 147
           T++  +++   C  ++  E A Q+L L+   G + +   Y+ LI +  K+ +VD    +F
Sbjct: 349 TITYSSLIDGFCKENRLGE-ANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLF 407

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                + +  D V +N L+    QSG ++ A ++  EM +   P  P  +T G L+    
Sbjct: 408 CEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVP--PSVVTYGILLDGLC 465

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           + G++ +A E+++ + K  +     +Y I I+        + A S++  ++ KGV PD +
Sbjct: 466 DNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVL 525

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + +I      G +  A  + ++ K  G +    +Y+ L+ A         ++EL E M
Sbjct: 526 TYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNILIRAHLGGSGVISSVELIEEM 585

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKT-MEVLS 355
           K        ST+  ++  L DG +L KT +++LS
Sbjct: 586 KMRGFAADASTIKMVVVMLSDG-RLDKTFLDMLS 618


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 136/292 (46%), Gaps = 11/292 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P L  F  L+S   S   +E A+QVL  +   G   D  LYT+LI     +G+V      
Sbjct: 536 PGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHV 595

Query: 144 -DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D+M E    PD + +  +I    + G V+ A ++L  M      V PD     +LM   
Sbjct: 596 FDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKS--GVGPDCFAYNSLMDGY 653

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               +VD+A  VY  +    IK     + + ++   + G  + A S++ +M +K  +P  
Sbjct: 654 VKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPT 713

Query: 262 -VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + LID  G AG+V  AF   QE  ++GI     +Y+SL+ + + A    +A +L E
Sbjct: 714 LVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVE 773

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            M  + + P V   +ALIT L D   +    +V  +M   G  PN +TY +L
Sbjct: 774 DMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 825



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 121/490 (24%), Positives = 212/490 (43%), Gaps = 38/490 (7%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPN----PTLSTF 95
           + E +D L++M   GL+  D V      N +CK++K I +A   F  +P+    PT+ ++
Sbjct: 1   MEEALDCLKEMHTTGLMP-DVVNCNIVLNGLCKARK-IDKAIELFLEMPSMGCEPTIVSY 58

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAMFE 148
           N ++S  AS    + A++    + + G + D   +TTLI    K+G+       ++   +
Sbjct: 59  NTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALK 118

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
             +PD  ++ ++I    ++G +D  F +L EM A      PD      L+      G+VD
Sbjct: 119 RFRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAA--GCIPDAAAYFVLIDPLCKLGRVD 176

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A E+++ + K    G    +   I   S  G  + AC +Y +M ++G  P      +LI
Sbjct: 177 EAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLI 236

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                AGKV+ A EI Q    + ++   ++Y+SLM            L+L   M      
Sbjct: 237 FALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNF 296

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P + T N L+      ++L   +E+   + S G  PN  TY+ ++        +E     
Sbjct: 297 PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAF 356

Query: 389 LSQAKE----DGVIPNLVMFKCIIGMCSRRYEKART--LNEHVLSFN--------SGRPQ 434
             +A +      VI  L   K I   C   +EK +T   + +V+++         +GR  
Sbjct: 357 FDEALDVISYTTVIKGLADSKRIDEAC-ELFEKLKTAGCSPNVVAYTAVIDGLLKAGR-- 413

Query: 435 IENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKR 494
           IE+   +   M     +   T  TV V+  +     LP    + E++V+  G   D +  
Sbjct: 414 IEDGLKNFEDMSGSSCVPTRTTYTV-VIDGLCKAQMLPDACKVFEQMVQK-GCVPDTITY 471

Query: 495 SNLCSLIDGF 504
           +   +LIDGF
Sbjct: 472 T---TLIDGF 478



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 106/511 (20%), Positives = 218/511 (42%), Gaps = 58/511 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L   G++ E  +L  +M  +G     +V  +  F +CK+ K + EA   ++ V    ++T
Sbjct: 204 LSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGK-VDEANEIYQTVVAKKVAT 262

Query: 95  ----FNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
               +N LM   C   +  +G   +L++V E     D + Y  L+   +++ ++D   E 
Sbjct: 263 SRVAYNSLMDGYCKLGRVDDGLKLLLQMV-ECDNFPDIQTYNILVAGFSRANRLDDALEL 321

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                    KP+   +  +I     +  ++ A     E          D I+   ++K  
Sbjct: 322 FKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEA--------LDVISYTTVIKGL 373

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A++ ++D A E+++ +           YT  I+   + G  E     ++DM+    +P  
Sbjct: 374 ADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTR 433

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + +ID    A  +  A ++ ++   +G     I+Y++L+   S A    +A +L + 
Sbjct: 434 TTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDV 493

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M +   +PT  T  +++   C  D + +  EV++ M+  G  P    ++ LL     K  
Sbjct: 494 MLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGR 553

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR-PQIENKWT 440
            E    +L++    G  P+++++  +I                 L F++GR P+  + + 
Sbjct: 554 AEEAYQVLTEMTARGCAPDVILYTSLID----------------LLFSTGRVPEARHVFD 597

Query: 441 SLALMVYR----EAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSN 496
           S   M+ +    +A+  GTI  ++  SK+     +    +I E + ++ GV  D    + 
Sbjct: 598 S---MIEKGCAPDALTYGTI--IQNFSKI---GNVEAAGEILELMAKS-GVGPDCFAYN- 647

Query: 497 LCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
             SL+DG+ + +   +AF + +   + GI P
Sbjct: 648 --SLMDGYVKLERVDQAFGVYDRMVASGIKP 676



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 102/485 (21%), Positives = 191/485 (39%), Gaps = 66/485 (13%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SY  +I+      RI E  +L E ++  G       Y A    + K+ + I++  + F+ 
Sbjct: 365 SYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGR-IEDGLKNFED 423

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      PT +T+ +++     ++    A +V   + + G   D   YTTLI   +K+ K
Sbjct: 424 MSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASK 483

Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +D                           +  DV+     E     P  +T G+++    
Sbjct: 484 MDE------------------------ARKLLDVMLTKGPE-----PTAVTYGSIVHGFC 514

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
               ++ A+EV   + +   +    ++T  ++     G  E A  V  +MT +G  PD +
Sbjct: 515 KLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVI 574

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             ++LID     G+V  A  +      +G +   ++Y +++   S   N + A E+ E M
Sbjct: 575 LYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELM 634

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               + P     N+L+      +++ +   V   M + G+ PN +T+++L+    +    
Sbjct: 635 AKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKT 694

Query: 383 EVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 441
           +    L  +  E D V P LV +  +I    +                +GR        S
Sbjct: 695 DRAFSLFKEMLEKDEVPPTLVSYTILIDGLGK----------------AGR-------VS 731

Query: 442 LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN---LGVSADALKRSNLC 498
            A   ++E I  G IP     + ++  L         ++LVE+   LGV+ D    S L 
Sbjct: 732 EAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALI 791

Query: 499 S-LID 502
           + LID
Sbjct: 792 TGLID 796


>gi|298709513|emb|CBJ48528.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 502

 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 123/266 (46%), Gaps = 11/266 (4%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK--------PDR 154
           A+S   E A   +  V+ +GLK D +++T  I      GK   +   +         P+ 
Sbjct: 43  AASGSWEEALAHVAEVRSSGLKLDGRVHTAAIRAALDGGKARPVLATIAAMRADGFVPNI 102

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAR 211
            ++N  I+ CG+ GA + A  +L +      P      D +T  A + AC + G+  +A 
Sbjct: 103 SLYNKAISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTFSAAVAACRDGGEWRQAL 162

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            + + +    IK     Y  A++ C+  G WE A ++  DM +  + PD V  S+ I   
Sbjct: 163 ALMEEMQAAGIKPDQIAYGTAVSACAMAGQWEKAVALLADMRRSKLRPDVVAYSSAIKAC 222

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
           G  G+ E A  +L+E +  G+   +I+Y+  M AC  A  W  AL L   ++   L+P  
Sbjct: 223 GAEGRWEEALGLLKEMQENGVRPNLITYTGAMEACGRAGRWNNALGLLAEVRDRGLRPDT 282

Query: 332 STMNALITALCDGDQLPKTMEVLSDM 357
            T+NA++ AL    +  K + +L  M
Sbjct: 283 FTLNAVMDALGRSGETEKALALLDTM 308



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 175/408 (42%), Gaps = 45/408 (11%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA---FRFFKLVPNP----- 90
           G+    +  +  M   G +    +Y+ +  ++C  Q A ++A    R  + V +P     
Sbjct: 81  GKARPVLATIAAMRADGFVPNISLYN-KAISLCGRQGAWEDAVFLLRDAQRVSSPGQRRG 139

Query: 91  -TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------- 142
             + TF+  ++ C    +   A  ++  +Q AG+K D   Y T ++ CA +G+       
Sbjct: 140 VDVVTFSAAVAACRDGGEWRQALALMEEMQAAGIKPDQIAYGTAVSACAMAGQWEKAVAL 199

Query: 143 -VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             D     ++PD V +++ I ACG  G  + A  +L EM  + + V P+ IT    M+AC
Sbjct: 200 LADMRRSKLRPDVVAYSSAIKACGAEGRWEEALGLLKEM--QENGVRPNLITYTGAMEAC 257

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGV-- 257
             AG+ + A  +   +    ++  P+ +T+   ++   ++G+ E A ++ D M       
Sbjct: 258 GRAGRWNNALGLLAEVRDRGLR--PDTFTLNAVMDALGRSGETEKALALLDTMRPPRPRA 315

Query: 258 -----IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
                 P     S+    +  + +V +A  +  +        G+ +  S+ G     KN 
Sbjct: 316 RPSPGTPPGFLPSSDPPSSYDSRRVHSAATLPTD--------GVEANDSIDG----LKNG 363

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
              L           +  V T +A +TA  +GDQ  K   +L +M+  G+ PN I Y++ 
Sbjct: 364 GGRLSGGGGWGGGGPRADVFTWSAAMTACIEGDQWQKVAGMLEEMRGDGVPPNAINYNLA 423

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKA 418
           + A  +  D E    LL + KE GV  +   F   I  C R   +E+A
Sbjct: 424 IRALGKGGDWERATGLLEEMKEAGVATDERAFNAAIEACGRGGCWERA 471



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 123/271 (45%), Gaps = 17/271 (6%)

Query: 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220
           + A   SG+ + A   +AE+ +    +D    T  A ++A  + G   +AR V   I   
Sbjct: 39  VKASAASGSWEEALAHVAEVRSSGLKLDGRVHT--AAIRAALDGG---KARPVLATIAAM 93

Query: 221 NIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTK-------KGVIPDEVFLSALIDF 270
              G  P +  Y  AI+ C + G WE A  +  D  +       +GV  D V  SA +  
Sbjct: 94  RADGFVPNISLYNKAISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGV--DVVTFSAAVAA 151

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G+   A  +++E +  GI    I+Y + + AC+ A  W+KA+ L   M+  KL+P 
Sbjct: 152 CRDGGEWRQALALMEEMQAAGIKPDQIAYGTAVSACAMAGQWEKAVALLADMRRSKLRPD 211

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           V   ++ I A     +  + + +L +M+  G+ PN ITY+  + AC R       L LL+
Sbjct: 212 VVAYSSAIKACGAEGRWEEALGLLKEMQENGVRPNLITYTGAMEACGRAGRWNNALGLLA 271

Query: 391 QAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
           + ++ G+ P+      ++    R  E  + L
Sbjct: 272 EVRDRGLRPDTFTLNAVMDALGRSGETEKAL 302



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 2/112 (1%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           + D   ++A +TAC +     +   +L EM  +  P  P+ I     ++A    G  +RA
Sbjct: 379 RADVFTWSAAMTACIEGDQWQKVAGMLEEMRGDGVP--PNAINYNLAIRALGKGGDWERA 436

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             + + + +  +      +  AI  C + G WE A  + DDM  +G++PD +
Sbjct: 437 TGLLEEMKEAGVATDERAFNAAIEACGRGGCWERAVRLVDDMHTEGLVPDSL 488



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 49/102 (48%)

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            ++ A+  C +   W+    + ++M   GV P+ +  +  I   G  G  E A  +L+E 
Sbjct: 384 TWSAAMTACIEGDQWQKVAGMLEEMRGDGVPPNAINYNLAIRALGKGGDWERATGLLEEM 443

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
           K  G++    ++++ + AC     W++A+ L + M +  L P
Sbjct: 444 KEAGVATDERAFNAAIEACGRGGCWERAVRLVDDMHTEGLVP 485



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 43/87 (49%)

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +L+E +  G+    I+Y+  + A     +W++A  L E MK   +       NA I A  
Sbjct: 404 MLEEMRGDGVPPNAINYNLAIRALGKGGDWERATGLLEEMKEAGVATDERAFNAAIEACG 463

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITY 369
            G    + + ++ DM + GL P+++TY
Sbjct: 464 RGGCWERAVRLVDDMHTEGLVPDSLTY 490


>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
 gi|224029903|gb|ACN34027.1| unknown [Zea mays]
 gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
          Length = 819

 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 174/408 (42%), Gaps = 17/408 (4%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARF---FNVCKSQKAIKEAFRFFKLVP-N 89
           L++ G   E I+L   M ER+     D V +      ++VC   +  K  F         
Sbjct: 303 LVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVR 362

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------- 142
           P + ++N L+   AS      A +  +L+++ GL+ D   YT+L+    +S +       
Sbjct: 363 PNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREV 422

Query: 143 VDAMFENV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            + M +N  KP++V +NALI A G +G +  A  +L EM  E   + PD I+I  L+ AC
Sbjct: 423 FNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEM--EQDGIQPDVISISTLLTAC 480

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               Q+ +   +        I+     Y   I      GD++ A  +Y  M    V PD 
Sbjct: 481 GRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDA 540

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LI  +   G+   + +  ++  +  I +    YSS++ +        +A   +  
Sbjct: 541 VTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNS 600

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK     P V T   LI A  D     +  ++  +M++ G  P+ I  S L+ A  +   
Sbjct: 601 MKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEALNKGGQ 660

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLS 427
            E  L L+   K+  +  N   +  II  C+  R ++ A  + EH+ S
Sbjct: 661 PERVLQLIEFMKQKKIQLNQKAYFEIISSCTMLRDWKTASQIIEHLDS 708



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/431 (21%), Positives = 185/431 (42%), Gaps = 56/431 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R G+    I++++DM+R  +      Y+    N C +    K+A    K 
Sbjct: 190 TYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYN-NVINACGAAGNWKKALELCKK 248

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKL------------ 129
           +      P L T N+++S   +      A     +++ + +  D C +            
Sbjct: 249 MTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKIGL 308

Query: 130 ------------------------YTTLI---TTCAKSGKVDAMF-----ENVKPDRVVF 157
                                   YT+++   + C ++    A+F     E V+P+ V +
Sbjct: 309 YGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRPNIVSY 368

Query: 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 217
           NAL+ A    G    A +    +    + + PD ++  +L+ A   + Q ++AREV+  +
Sbjct: 369 NALLGAYASHGMHTEALETFKLLKQ--NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEM 426

Query: 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 277
            K   K     Y   I+     G  + A S+  +M + G+ PD + +S L+   G   ++
Sbjct: 427 RKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQL 486

Query: 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
                IL  AK++GI +  ++Y+S +G+  +  +++KAL LY  M++  +KP   T N L
Sbjct: 487 TKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNIL 546

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           I+  C   +  ++++   DM  L +      YS ++ +  ++  +       +  KE G 
Sbjct: 547 ISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETGC 606

Query: 398 IPNLVMFKCII 408
            P+++ +  +I
Sbjct: 607 FPDVLTYTTLI 617



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 145/331 (43%), Gaps = 14/331 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------- 142
           P   T+N L+   A +     A  ++  +Q A +      Y  +I  C  +G        
Sbjct: 186 PNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALEL 245

Query: 143 VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
              M EN V PD +  N +++A        +A      M +    V PD  T+  ++   
Sbjct: 246 CKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSS--KVAPDTCTMNIVIHCL 303

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              G    A E++  + +      P+V  YT  +   S  G  E   +V+D M  +GV P
Sbjct: 304 VKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMVAEGVRP 363

Query: 260 DEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           + V  +AL+  +A H    EA  E  +  K  G+   I+SY+SL+ A   +   +KA E+
Sbjct: 364 NIVSYNALLGAYASHGMHTEA-LETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREV 422

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           +  M+    KP   + NALI A      L + + +L +M+  G+ P+ I+ S LL AC R
Sbjct: 423 FNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGR 482

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
              +    ++L+ AK  G+  N V +   IG
Sbjct: 483 CKQLTKIDIILAAAKSRGIQLNTVAYNSGIG 513



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 121/259 (46%), Gaps = 5/259 (1%)

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           R  F  LI     SG++  A  V   M N E +    D    G +++  A   +VD+AR 
Sbjct: 117 RRNFPLLIREIAISGSLKHAVHVFRWMKNQENYCARND--IYGMMIRLHARHNKVDQARG 174

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           ++  + ++  K   + Y   I+  ++ G W +A ++ DDM +  + P     + +I+  G
Sbjct: 175 LFFEMQEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIPPSRTTYNNVINACG 234

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            AG  + A E+ ++    G+   +I+++ ++ A  N   + KA+  +E MKS K+ P   
Sbjct: 235 AAGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTC 294

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLC--PNTITYSILLVACERKDDVEVGLMLLS 390
           TMN +I  L       + +E+ + M+       P+ +TY+ ++ +       E    +  
Sbjct: 295 TMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFD 354

Query: 391 QAKEDGVIPNLVMFKCIIG 409
               +GV PN+V +  ++G
Sbjct: 355 IMVAEGVRPNIVSYNALLG 373



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 186/421 (44%), Gaps = 71/421 (16%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVDA----MFE- 148
           F +L+   A S   + A  V R ++ +    A   +Y  +I   A+  KVD      FE 
Sbjct: 120 FPLLIREIAISGSLKHAVHVFRWMKNQENYCARNDIYGMMIRLHARHNKVDQARGLFFEM 179

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                KP+   +N+LI A  ++G    A +++ +M     P  P   T   ++ AC  AG
Sbjct: 180 QEWRCKPNTDTYNSLIHAHARAGQWCWAINIMDDMQRAAIP--PSRTTYNNVINACGAAG 237

Query: 206 QVDRAREVYKMIHK---------YNI------------------------KGTPEVYT-- 230
              +A E+ K + +         +NI                        K  P+  T  
Sbjct: 238 NWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMN 297

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVFLSALI---DFAGHAGKVEAAFEILQ 285
           I I+C  + G +  A  +++ M ++     PD V  ++++      G A   +A F+I+ 
Sbjct: 298 IVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQAENCKAVFDIMV 357

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
               +G+   I+SY++L+GA ++     +ALE ++ +K   L+P + +  +L+ A     
Sbjct: 358 A---EGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSA 414

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           Q  K  EV ++M+     PN ++Y+ L+ A      ++  + LL + ++DG+ P+++   
Sbjct: 415 QPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISIS 474

Query: 406 CIIGMCSRRYE-----------KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAG 454
            ++  C R  +           K+R +  + +++NSG        + L+L  Y++A+V  
Sbjct: 475 TLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIG------SYLSLGDYKKALVLY 528

Query: 455 T 455
           T
Sbjct: 529 T 529



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/442 (21%), Positives = 178/442 (40%), Gaps = 62/442 (14%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  V   + SYN L+      G  +E ++  + +++ GL   D V +    N        
Sbjct: 358 AEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRP-DIVSYTSLLNAYGRSAQP 416

Query: 78  KEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           ++A   F    K    P   ++N L+    S+   + A  +L  +++ G++ D    +TL
Sbjct: 417 EKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTL 476

Query: 134 ITTCAKS---GKVDAMFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +T C +     K+D +    K      + V +N+ I +    G   +A  +   M A   
Sbjct: 477 LTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRA--G 534

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY---------------- 229
            V PD +T   L+      G+   + + ++ +   NI  T EVY                
Sbjct: 535 NVKPDAVTYNILISGSCKLGRYVESLKFFEDMLDLNIHLTKEVYSSVICSYVKQGKLTEA 594

Query: 230 -------------------TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
                              T  I   S  G W  A  ++ +M   G  PD +  S+L++ 
Sbjct: 595 ASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRAWDLFKEMENNGTQPDAIVCSSLMEA 654

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G+ E   ++++  K + I +   +Y  ++ +C+  ++W+ A ++ EH+ S     +
Sbjct: 655 LNKGGQPERVLQLIEFMKQKKIQLNQKAYFEIISSCTMLRDWKTASQIIEHLDSSLSSIS 714

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDM----KSLGLCPNTITYSILLVACERKDDVEVGL 386
             T+N ++  L    +    M++   M     ++GL   TI    LL+  + +  VEV  
Sbjct: 715 FGTLNHILNFLGKCGRTESMMKLFYKMVTSCSTVGLSTYTILLRNLLIVGKWRKYVEV-- 772

Query: 387 MLLSQAKEDGVIPNLVMFKCII 408
             L   ++ GV P L M++ ++
Sbjct: 773 --LQWMEDAGVCPTLYMYQSVL 792


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 152/343 (44%), Gaps = 14/343 (4%)

Query: 78  KEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +EA   +K++      P++ T+++LM      +D E    +LR ++  G+K +   YT  
Sbjct: 256 REALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTIC 315

Query: 134 ITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I    ++ + D  +        E  KPD +    LI     +G +  A DV  +M     
Sbjct: 316 IRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQ 375

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
              PD +T   L+   A+ G+     E++  +           YT  I+   Q G    A
Sbjct: 376 --KPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEA 433

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             ++D+M +KG++P++   ++LI     A +   A E+ +     G      ++   +  
Sbjct: 434 LEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINY 493

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
              +    KA++ YE MKS  + P V   NA++  L    +L     V  ++K++G+ P+
Sbjct: 494 YGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPD 553

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           TITY++++  C +    +  + +     E+  +P++++   +I
Sbjct: 554 TITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLI 596



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 166/375 (44%), Gaps = 17/375 (4%)

Query: 47  LLEDMERKGLLDMDKVY-HARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSV 101
           LL +ME  G+     VY +     V    +   EA+R    + N    P + T  +L+ V
Sbjct: 296 LLREMEAHGV--KPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQV 353

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPD 153
              +     A  V   ++++  K D   Y TL+   A +G+  ++ E            +
Sbjct: 354 LCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDN 413

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
            V + A+I A  Q G V  A ++  EM  +   + P+  +  +L+     A +   A E+
Sbjct: 414 VVAYTAVIDALCQVGRVFEALEMFDEMKQK--GIVPEQYSYNSLISGFLKADRFGDALEL 471

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           +K +  +  K     + + IN   ++G+   A   Y+ M  KG++PD V  +A++     
Sbjct: 472 FKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAK 531

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           +G++  A  +  E K  G+S   I+Y+ ++  CS A  + +A++++  M      P V  
Sbjct: 532 SGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLV 591

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
           +N+LI  L    +  +  ++   +K + L P   TY+ LL    R+  V+  + LL +  
Sbjct: 592 VNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMY 651

Query: 394 EDGVIPNLVMFKCII 408
                PNL+ +  I+
Sbjct: 652 HSNYPPNLITYNTIL 666



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 155/361 (42%), Gaps = 17/361 (4%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF------ 147
           T+N L+     S     A +V +++   G+    + Y+ L+    K   V+ +       
Sbjct: 241 TYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREM 300

Query: 148 --ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               VKP+   +   I   GQ+   D A+ +LAEM  E     PD IT   L++   +AG
Sbjct: 301 EAHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENE--GCKPDVITHTVLIQVLCDAG 358

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++  A++V+  + K + K     Y   ++  +  G+ +    +++ M   G   + V  +
Sbjct: 359 RISDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYT 418

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           A+ID     G+V  A E+  E K +GI     SY+SL+     A  +  ALEL+++M   
Sbjct: 419 AVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIH 478

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
             KP   T    I       +  K ++    MKS G+ P+ +  + +L    +   + + 
Sbjct: 479 GPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMA 538

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM 445
             +  + K  GV P+ + +  +I  CS    KA   +E V  F      IEN      L+
Sbjct: 539 KRVFHELKAMGVSPDTITYTMMIKCCS----KASKFDEAVKIFYD---MIENNCVPDVLV 591

Query: 446 V 446
           V
Sbjct: 592 V 592



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/422 (20%), Positives = 170/422 (40%), Gaps = 50/422 (11%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AH V   ++SY   IR      R  E   +L +ME +G    D + H     V      I
Sbjct: 302 AHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGC-KPDVITHTVLIQVLCDAGRI 360

Query: 78  KEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A   F    K    P   T+  L+   A + +S+   ++   ++  G   +   YT +
Sbjct: 361 SDAKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAV 420

Query: 134 ITTCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEM----- 180
           I    + G+V     MF+ +K     P++  +N+LI+   ++     A ++   M     
Sbjct: 421 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGP 480

Query: 181 --NAEVH--------------------------PVDPDHITIGALMKACANAGQVDRARE 212
             N   H                           + PD +   A++   A +G++  A+ 
Sbjct: 481 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 540

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           V+  +    +      YT+ I CCS+   ++ A  ++ DM +   +PD + +++LID   
Sbjct: 541 VFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLY 600

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            AG+ + A++I  + K   +     +Y++L+         ++ + L E M      P + 
Sbjct: 601 KAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 660

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N ++  LC    +   +++L  M + G  P+  +Y+ ++    +++       +  Q 
Sbjct: 661 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 720

Query: 393 KE 394
           K+
Sbjct: 721 KK 722



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 103/499 (20%), Positives = 192/499 (38%), Gaps = 62/499 (12%)

Query: 18   HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
            H+NY  ++       + L + G +++ +D+L  M  KG +     Y+   + + K ++  
Sbjct: 652  HSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEER-Y 710

Query: 78   KEAFRFF-----KLVPN--------PTL--------------------------STFNML 98
             EAF  F      L+P+        P+                           S+ + L
Sbjct: 711  NEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHSL 770

Query: 99   MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVV-- 156
            M        +E + +   ++  +G+  D      LI    K  K     E VK  +    
Sbjct: 771  MEGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGV 830

Query: 157  ------FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
                  +N+LI        +D A  + AEM        PD  T   L+ A   + +++  
Sbjct: 831  SLKTGSYNSLICGLVDENLIDIAEGLFAEMKE--LGCGPDEFTYNLLLDAMGKSMRIEEM 888

Query: 211  REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
             +V + +H+   + T   Y   I+   ++   E A  +Y ++  +G  P       L+D 
Sbjct: 889  LKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDG 948

Query: 271  AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               AG++E A  +  E    G       Y+ L+     A N +K   L++ M    + P 
Sbjct: 949  LLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPD 1008

Query: 331  VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
            + +   +I  LC   QL   +     +  +GL P+ ITY++L+    +   +E  + L +
Sbjct: 1009 IKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFN 1068

Query: 391  QAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNE--------HVLSFNSG-RPQIENK 438
            + ++ G++PNL  +  +I   G   +  E  +   E        +V ++N+  R    + 
Sbjct: 1069 EMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSG 1128

Query: 439  WTSLALMVYREAIVAGTIP 457
             T  A   Y   IV G +P
Sbjct: 1129 STDSAYAAYGRMIVGGCLP 1147



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 4/157 (2%)

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           ++D     G+V    E+    + Q +   + +++++ G        + A      MK   
Sbjct: 175 MLDLMRDHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAG 234

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           +     T N L+  L       + +EV   M   G+ P+  TYS+L+VA  ++ DVE  L
Sbjct: 235 IVLNAYTYNGLVYFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVL 294

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 423
            LL + +  GV PN+  +     +C R   +AR  +E
Sbjct: 295 WLLREMEAHGVKPNVYSYT----ICIRVLGQARRFDE 327



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 6/223 (2%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           V +AL +A G + A++R F   A     VH       +   ++    + G+V    EV+ 
Sbjct: 139 VIHALRSADGPAEALER-FRSAARRPRVVHTT----ASCNYMLDLMRDHGRVGDMAEVFD 193

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
           ++ +  +K     +          G    A      M + G++ +    + L+ F   +G
Sbjct: 194 VMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSG 253

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
               A E+ +     G+   + +YS LM A    ++ +  L L   M++  +KP V +  
Sbjct: 254 FDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYT 313

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACE 377
             I  L    +  +   +L++M++ G  P+ IT+++L+ V C+
Sbjct: 314 ICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCD 356


>gi|356574297|ref|XP_003555285.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 794

 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 178/407 (43%), Gaps = 19/407 (4%)

Query: 23  HDVSEQLHSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H ++  L +YN LI   R G +  E +DL E+++  G    D V +    +V    +  K
Sbjct: 244 HGLAPDLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRP-DAVTYNALLDVYGKSRRPK 302

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA    K + +    P++ T+N L+S        E A  + R + + G+K D   YTTL+
Sbjct: 303 EAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLL 362

Query: 135 TTCAKSGKVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
           +    +GK +    +FE +     KP+   FNALI   G  G  +    V  E+  +V  
Sbjct: 363 SGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEI--KVCK 420

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             PD +T   L+      G       V++ + +       + +   I+   + G ++ A 
Sbjct: 421 CSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAM 480

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           + Y  M + GV PD    +A++      G  E + ++L E K+ G     ++YSSL+ A 
Sbjct: 481 AAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAY 540

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
           +N +  ++   L E + S  +K     +  L+      D L +T     + +  G+ P+ 
Sbjct: 541 ANGREVERMNALAEEIYSGTIKTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDV 600

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            T + +L    RK  V     +L+   E G+  +L  +  ++ M SR
Sbjct: 601 TTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLTSYNSLMYMYSR 647



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/393 (22%), Positives = 164/393 (41%), Gaps = 48/393 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRF 83
           +YN L+    R G + + + L   M  KG+      Y    + F N  K + A++     
Sbjct: 322 TYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNAGKEELAMEVFEEM 381

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-- 141
            K+   P + TFN L+ +       E   +V + ++      D   + TL+    ++G  
Sbjct: 382 RKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVCKCSPDIVTWNTLLAVFGQNGMD 441

Query: 142 -KVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHP-------- 186
            +V  +FE +K     P+R  FN LI+A G+ G+ D+A      M  A V P        
Sbjct: 442 SEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAV 501

Query: 187 ------------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
                                     P+ +T  +L+ A AN  +V+R   + + I+   I
Sbjct: 502 LATLARGGLWEQSEKVLAEMKDGGCKPNEVTYSSLLHAYANGREVERMNALAEEIYSGTI 561

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           K    +    +   S+          + +  K+G+ PD    +A++   G    V  A E
Sbjct: 562 KTHAVLLKTLVLVNSKVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANE 621

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           IL      G+++ + SY+SLM   S  +N+ K+ +++  +    ++P V + N +I A C
Sbjct: 622 ILNFMYESGLTLSLTSYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYC 681

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             D + +   ++ +MK     P+ +TY+  + A
Sbjct: 682 RNDMMDEAKRIIEEMKVPAPVPDVVTYNTFIAA 714



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 143/328 (43%), Gaps = 11/328 (3%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFENV 150
           +  L++  A++K    A +V   ++E G +     Y  ++    K G    K+ A+ +++
Sbjct: 182 YTSLITAYANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDM 241

Query: 151 K-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           K     PD   +N LI+ C      + A D+  E+  +V    PD +T  AL+     + 
Sbjct: 242 KCHGLAPDLCTYNTLISCCRAGSLYEEALDLFEEI--KVAGFRPDAVTYNALLDVYGKSR 299

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +   A EV K +   + + +   Y   ++   + G  E A  +   M  KG+ PD    +
Sbjct: 300 RPKEAMEVLKQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYT 359

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+    +AGK E A E+ +E +  G    I ++++L+    +   +++ +++++ +K  
Sbjct: 360 TLLSGFVNAGKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDRGKFEEMVKVFKEIKVC 419

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           K  P + T N L+          +   V  +MK     P   T++ L+ A  R    +  
Sbjct: 420 KCSPDIVTWNTLLAVFGQNGMDSEVSGVFEEMKRSRFAPERDTFNTLISAYGRCGSFDQA 479

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +    +  E GV P+L  +  ++   +R
Sbjct: 480 MAAYKRMLEAGVSPDLSTYNAVLATLAR 507



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 124/275 (45%), Gaps = 9/275 (3%)

Query: 147 FENVKPDRV------VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           F   + DRV      V   +++  G++G V RA  +L  + A+   VD    T  +L+ A
Sbjct: 131 FIRTRNDRVSLLNGSVIAVIVSILGKTGRVSRAASLLHNLEADGFEVDVYGYT--SLITA 188

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIP 259
            AN  +   A +V+  + +   + T   Y   +N   + G  W    ++  DM   G+ P
Sbjct: 189 YANNKKYRDALKVFGKMKEVGCEPTLITYNAILNVYGKMGMPWAKIIALVQDMKCHGLAP 248

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D    + LI         E A ++ +E K  G     ++Y++L+     ++  ++A+E+ 
Sbjct: 249 DLCTYNTLISCCRAGSLYEEALDLFEEIKVAGFRPDAVTYNALLDVYGKSRRPKEAMEVL 308

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M+S   +P+V T N+L++A   G  L   + +   M   G+ P+  TY+ LL      
Sbjct: 309 KQMESNSFRPSVVTYNSLVSAYVRGGLLEDALVLKRKMVDKGIKPDVYTYTTLLSGFVNA 368

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
              E+ + +  + ++ G  PN+  F  +I M   R
Sbjct: 369 GKEELAMEVFEEMRKVGCKPNICTFNALIKMYGDR 403



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/295 (19%), Positives = 122/295 (41%), Gaps = 43/295 (14%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG------KV 143
           P   TFN L+S        + A    + + EAG+  D   Y  ++ T A+ G      KV
Sbjct: 458 PERDTFNTLISAYGRCGSFDQAMAAYKRMLEAGVSPDLSTYNAVLATLARGGLWEQSEKV 517

Query: 144 DAMFEN--VKPDRVVFNALITACGQSGAVDRAFDVLAE-------------------MNA 182
            A  ++   KP+ V +++L+ A      V+R  + LAE                   +N+
Sbjct: 518 LAEMKDGGCKPNEVTYSSLLHAYANGREVER-MNALAEEIYSGTIKTHAVLLKTLVLVNS 576

Query: 183 EV---------------HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
           +V                 + PD  T  A++        V +A E+   +++  +  +  
Sbjct: 577 KVDLLVETERAFLEFRKRGISPDVTTSNAMLSIYGRKKMVPKANEILNFMYESGLTLSLT 636

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y   +   S+T ++  +  ++ ++  KG+ PD +  + +I        ++ A  I++E 
Sbjct: 637 SYNSLMYMYSRTENFHKSEQIFREILDKGIEPDVISYNIVIYAYCRNDMMDEAKRIIEEM 696

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           K       +++Y++ + A +    + +A+++  +M     KP  +T N+++   C
Sbjct: 697 KVPAPVPDVVTYNTFIAAYAADSMFVEAIDVIRYMIKQGCKPNHNTYNSIVDWYC 751


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 145/327 (44%), Gaps = 45/327 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDAM 146
           P L+  N  M     + D E    +   ++  G   D + Y+ LI    K+G+     ++
Sbjct: 22  PDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSI 81

Query: 147 FENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F  +K      D   +NA++    +SG VD+A++ L EM  +V  V P   T G+++   
Sbjct: 82  FHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEM--KVKHVPPTVATYGSIIDGL 139

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A   ++DR  E Y +                                +++   KG+  + 
Sbjct: 140 A---KIDRLDEAYML--------------------------------FEEAKSKGIELNV 164

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  S+LID  G  G+++ A+ IL+E   +G++  + +++SLM A   A+   +AL  ++ 
Sbjct: 165 IVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQS 224

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK +K  P   T + LI  LC   +  K      +M+  GL PN +TY+ ++    +  +
Sbjct: 225 MKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGN 284

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +     L  + K +G IP+   F  +I
Sbjct: 285 ITDACSLFERFKANGGIPDAASFNALI 311



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 136/296 (45%), Gaps = 21/296 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK--EAFRFFKL--VPNP 90
           L + G+  E   +   M+++G     + Y+A     CKS K  K  EA    K+  VP P
Sbjct: 69  LTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVP-P 127

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
           T++T+  ++   A     + A+ +    +  G++ +  +Y++LI    K G++D  +   
Sbjct: 128 TVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLIL 187

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMK 199
                + + P+   +N+L+ A  ++  ++ A   F  + EM        P+  T   L+ 
Sbjct: 188 EEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKC-----SPNTYTYSILIN 242

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                 + ++A   ++ + K  +      YT  I+  ++ G+   ACS+++     G IP
Sbjct: 243 GLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANGGIP 302

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           D    +ALI+   HA +   A+ + +E + +G  + + +  SL+ A + A+  ++A
Sbjct: 303 DAASFNALIEGMSHANRAIEAYHVFEETRLRGCRINVKACISLLDALNKAECIEQA 358



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 105/226 (46%), Gaps = 4/226 (1%)

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G+ +   +++K +++   +    +    ++C  + GD E   ++++D+   G +PD    
Sbjct: 3   GRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSY 62

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           S LI     AG+      I    K +G ++   +Y++++     +    KA E  E MK 
Sbjct: 63  SILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKV 122

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             + PTV+T  ++I  L   D+L +   +  + KS G+  N I YS L+    +   ++ 
Sbjct: 123 KHVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDE 182

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS 430
             ++L +  + G+ PN+  +  ++        KA  +NE ++ F S
Sbjct: 183 AYLILEEMMKKGLAPNVYTWNSLMDALV----KAEEINEALICFQS 224


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 176/386 (45%), Gaps = 25/386 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P L+TFN+ ++    +     A  V+  ++  G   +   Y TLI    K G    M+  
Sbjct: 198 PNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRA 257

Query: 149 ----------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                      + P+ + FN LI    +   V  A +   EM  +   + P+ +T  +L+
Sbjct: 258 DAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEM--QRQGLKPNIVTYNSLI 315

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              +N G++D A  ++  +    +K     +   IN   +    + A  ++DD+ ++ ++
Sbjct: 316 NGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLV 375

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+ +  + +ID    AG +E  F +     ++GI   + +Y+ L+      +N + A +L
Sbjct: 376 PNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKL 435

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
              M++ +LK  V T N LI   C   +  K  ++L +M ++G+ PN +TY+ L+     
Sbjct: 436 LNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCM 495

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA-RTLNEHV-LSFNSGRPQ 434
           + +++  L + +Q +++G   N+V +  +I G C + + E A R LNE +    N  R  
Sbjct: 496 EGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTT 555

Query: 435 IENKWTSLALMVYREAIVAGTIPTVE 460
            +        +V  E +  G IP +E
Sbjct: 556 YD--------VVRLEMLEKGFIPDIE 573



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 153/339 (45%), Gaps = 45/339 (13%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAMFEN--- 149
           +ML+    ++ +   A +V R VQ+ G K        L++   K   +G++  +++    
Sbjct: 134 DMLVLAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIK 193

Query: 150 --VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             ++P+   FN  I    ++G +++A DV+ ++ A      P+ +T   L+      G  
Sbjct: 194 RRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKA--WGFSPNIVTYNTLIDGHCKKGS- 250

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             A ++Y+                             A ++  +M    + P+E+  + L
Sbjct: 251 --AGKMYR-----------------------------ADAILKEMLANKICPNEITFNTL 279

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ID       V AA    +E + QG+   I++Y+SL+   SN     +A+ L++ M  + L
Sbjct: 280 IDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGL 339

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           KP + T NALI   C    + +  ++  D+    L PN IT++ ++ A  +   +E G  
Sbjct: 340 KPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFA 399

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCSRRYEKA--RTLNE 423
           L +   ++G+ PN+  + C+I G+C  +  +A  + LNE
Sbjct: 400 LHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNE 438



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 163/394 (41%), Gaps = 61/394 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS--------QKAIKEAFRFF 84
           N L + G++++  D++ED++  G       Y+      CK           AI +     
Sbjct: 208 NGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLAN 267

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K+ PN    TFN L+      ++   A      +Q  GLK +   Y +LI   + +GK+D
Sbjct: 268 KICPNEI--TFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLD 325

Query: 145 ---AMFEN-----VKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHIT 193
              A+++      +KP+ V FNALI    +   +  A   FD +AE +     + P+ IT
Sbjct: 326 EAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQD-----LVPNAIT 380

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              ++ A   AG ++                                   FA  +++ M 
Sbjct: 381 FNTMIDAFCKAGMMEEG---------------------------------FA--LHNSML 405

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            +G+ P+    + LI        V AA ++L E +N  +   +++Y+ L+G         
Sbjct: 406 DEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPS 465

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA +L   M ++ +KP   T N L+   C    L   ++V + M+  G   N +TY++L+
Sbjct: 466 KAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLI 525

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
               +   +E    LL++  E G+ PN   +  +
Sbjct: 526 KGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVV 559



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 113/235 (48%), Gaps = 25/235 (10%)

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCS----------QTGDWEFACSVYDDMTKK 255
           ++  A EV++ +  Y  K       +++N C+          +TG+ ++   VY +M K+
Sbjct: 145 EIHSACEVFRRVQDYGFK-------LSLNSCNPLLSALVKGNETGEMQY---VYKEMIKR 194

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GAC--SNAKNW 312
            + P+    +  I+    AGK+  A +++++ K  G S  I++Y++L+ G C   +A   
Sbjct: 195 RIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKM 254

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            +A  + + M + K+ P   T N LI   C  + +        +M+  GL PN +TY+ L
Sbjct: 255 YRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSL 314

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY-EKARTLNEHV 425
           +        ++  + L  +    G+ PN+V F  +I G C ++  ++AR L + +
Sbjct: 315 INGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDI 369


>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
          Length = 1443

 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 145/311 (46%), Gaps = 21/311 (6%)

Query: 89  NPTLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-- 144
            P L +FN L++  A S    +  A ++L  V++AGL+ D   Y TLI+ C++   +D  
Sbjct: 253 EPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDA 312

Query: 145 -AMFENV-----KPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            A+FE +     +PD   +NA+++    CG++   +  F  L E   +     PD +T  
Sbjct: 313 VAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQ-----PDAVTYN 367

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+ A A  G V+R   V + + K   +     Y   I+   + G  + A  +YD+M   
Sbjct: 368 SLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAI 427

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  PD V  + L+D  G   ++  A ++L+E  + G+   ++++S+L+ A + +     A
Sbjct: 428 GCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDA 487

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
              ++ M    +KP       ++      D+  K M +   M   G  P+   Y +LL A
Sbjct: 488 ERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAA 547

Query: 376 CER---KDDVE 383
             +    D++E
Sbjct: 548 LAKGNEHDEIE 558



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 149/333 (44%), Gaps = 12/333 (3%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG------KVD 144
           T+  FN +M V A S   + A Q+L  +++  ++ D   + TLI   AKSG       ++
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVALE 279

Query: 145 AMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            + E     ++PD + +N LI+AC Q   +D A  V  EM A      PD  T  A++  
Sbjct: 280 LLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIAS--ECRPDLWTYNAMVSV 337

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G+   A  ++K + +   +     Y   +   ++ GD E    V +++ K G   D
Sbjct: 338 HGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKD 397

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  + +I   G  G+++ A  +  E +  G +   ++Y+ L+ +        +A ++ E
Sbjct: 398 GITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLE 457

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    LKPT+ T +ALI A     +          M   G+ P+ + Y ++L    R D
Sbjct: 458 EMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSD 517

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +    ++L     +DG  P+  +++ ++   ++
Sbjct: 518 ETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAK 550



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 149/320 (46%), Gaps = 21/320 (6%)

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAMF-ENVKPDRVVFNALITACGQ 166
           LR  +E    A  +++  ++   A+SG+       +DAM  ++++PD V FN LI A  +
Sbjct: 212 LRFAREG---ATVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAK 268

Query: 167 SGAVDRAFDVLAEMNAEVHP--VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
           SG +  A  V  E+  EV    + PD IT   L+ AC+    +D A  V++ +     + 
Sbjct: 269 SGCL--AAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRP 326

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
               Y   ++   + G  + A  ++ ++ +KG  PD V  ++L+      G VE    + 
Sbjct: 327 DLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVC 386

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
           +E    G     I+Y++++           AL LY+ M++I   P   T   L+ +L   
Sbjct: 387 EELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKM 446

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVA---CERKDDVEVGLMLLSQAKEDGVIPNL 401
           D++ +  +VL +M   GL P  +T+S L+ A     R+DD E       +  E GV P+ 
Sbjct: 447 DRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAE---RTFDRMVESGVKPDR 503

Query: 402 VMFKCIIGMCSRRYEKARTL 421
           + +  ++ + +R  E  + +
Sbjct: 504 LAYLVMLDVFARSDETRKLM 523



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 16/336 (4%)

Query: 88   PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P PT+ + N +M         +  + V++ +Q+  +K        ++   AK+G V   F
Sbjct: 813  PLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDV---F 869

Query: 148  ENVK-----------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
            E +K           P+  ++  +I+    +        ++AEM  E     PD + +  
Sbjct: 870  EVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEM--EGAGFKPDLVVLNT 927

Query: 197  LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
            L+      G  DR  EVY  I +  ++   + Y   I   S+    E   ++  +M K+G
Sbjct: 928  LLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRG 987

Query: 257  VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
            + P       L+  +G A   E A  + +E + +G  +    Y  +M    NA+N  KA 
Sbjct: 988  LTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAE 1047

Query: 317  ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
             L   MK   ++PT++TM+ L+T+        +  +VL+ +KS  L  +T+ YS +L A 
Sbjct: 1048 HLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAY 1107

Query: 377  ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
             R  D  +G+  L + K DGV P+  ++   I   S
Sbjct: 1108 LRNRDYSLGITKLLEMKRDGVEPDHQVWTSFIRAAS 1143



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 109/512 (21%), Positives = 194/512 (37%), Gaps = 101/512 (19%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---A 145
            P   T+N L+   A   D E   +V   + +AG + D   Y T+I    K G++D    
Sbjct: 360 QPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALG 419

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +++ ++     PD V +  L+ + G+   +  A  VL EM      + P  +T  AL+ A
Sbjct: 420 LYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADA--GLKPTLVTFSALICA 477

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A +G+ D A   +  + +  +K     Y + ++  +++ +      +Y  M K G  PD
Sbjct: 478 YAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPD 537

Query: 261 ----EVFLSALI------DFAGHAGKVEAAFE----------ILQEAKNQGISV------ 294
               +V L+AL       +  G    +EA FE          I  E  +QG S+      
Sbjct: 538 DGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVISSILIKAECISQGASLLKRACL 597

Query: 295 -----------------------------------------GIISYSSLMGACSNAKNWQ 313
                                                     +IS  S+M  C N K   
Sbjct: 598 QGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQHVPNSHNLISECSIMLLCKNGK-IV 656

Query: 314 KALELYEHMKSIK---LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            A++ Y   + +K             LIT L + +  P+  +V  DM+ LG+ P+   + 
Sbjct: 657 DAIQEYSRKQMLKRGSFGQDCDLYEYLITYLEEAELFPEACQVFCDMQFLGIVPSQKVFP 716

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS 430
             +  C R    E    L+  A    +  +L +  C + M    Y K + L +   +F  
Sbjct: 717 SFIFQCCRLGFPETAYQLMDDAARSDI--SLNILSCRVAMIE-AYGKLK-LWQQAENFVK 772

Query: 431 GRPQ---IENK-WTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 474
           G  Q   ++ + W +L            A  ++   I  G +PTVE V+ ++  L +   
Sbjct: 773 GLKQESGVDRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLPTVESVNGMMRALIVDGR 832

Query: 475 ADIRERLVENLGVSADALKRSNLCSLIDGFGE 506
            D    +V+ L      + +S +  +++ F +
Sbjct: 833 LDELYVVVQELQDLDIKISKSTVLLMLEAFAK 864



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 115/576 (19%), Positives = 209/576 (36%), Gaps = 111/576 (19%)

Query: 153  DRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
            DR ++NALI A  +SG  + A   FD++ +      P+ P   ++  +M+A    G++D 
Sbjct: 781  DRRIWNALIHAYAESGLYEHARAIFDIMIKKG----PL-PTVESVNGMMRALIVDGRLDE 835

Query: 210  AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
               V + +   +IK +     + +   ++ GD      +Y+ M   G +P+      +I 
Sbjct: 836  LYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMIS 895

Query: 270  FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
               H  +      ++ E +  G    ++  ++L+   +   N+ + +E+Y  +    L+P
Sbjct: 896  LLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEP 955

Query: 330  TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML- 388
               T N LI       +  +   +L +M   GL P   +Y ILL A  +    E   +L 
Sbjct: 956  DEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLF 1015

Query: 389  ----------------------------------LSQAKEDGVIPNLVMFKCII---GMC 411
                                              LS  KEDG+ P +     ++   G  
Sbjct: 1016 EEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTS 1075

Query: 412  SRRYEKARTLNEHVLSFNSGRPQI-------------ENKWTSLALMVYREAIVAGTIPT 458
                E  + LN    S  S   +I              N+  SL +    E    G  P 
Sbjct: 1076 GHPDEAEKVLN----SLKSSNLEISTLPYSTVLDAYLRNRDYSLGITKLLEMKRDGVEPD 1131

Query: 459  VEVVSKVLGCLQLPYNADIRERLVENLGVSADAL-------KRSNLCSLIDGFGEYDPRA 511
             +V +  +    L    D    L+++L      L       + S+L + +D F E     
Sbjct: 1132 HQVWTSFIRAASLCEQTDDAILLLKSLQDCGFDLPIRLLTERTSSLFTEVDSFLE----K 1187

Query: 512  FSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRH------------ 559
               LE++AS   V       +  ++ A +     + ++ L + + + H            
Sbjct: 1188 LGTLEDSASLNFV-----NALEDLLWAFERRATASWIFQLAVKRSIYHHNIFRVEEKDWG 1242

Query: 560  ----RLAAGAKLPNVNILL-----------PVEKTQIMSVGGEKTIDIAERTTQAIAALL 604
                +L+AGA L  + + L           P     I+ V GE   ++     + I A L
Sbjct: 1243 ADLRKLSAGAALVALTLWLDQMQDASLQGAPESPKSIVLVTGEGEYNMVS-LRKTIRAYL 1301

Query: 605  RRLGLPYQG-NGSYGKIRINGLALKRWFQPKLASPF 639
              +G P+       G+  +   +LK W +    SPF
Sbjct: 1302 LEMGSPFLPCRSRSGRFVVKAYSLKMWLKD---SPF 1334



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 75/387 (19%), Positives = 159/387 (41%), Gaps = 50/387 (12%)

Query: 87   VPNP-TLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            VPN   L +   +M +C + K  D+   +   ++++      DC LY  LIT   ++   
Sbjct: 634  VPNSHNLISECSIMLLCKNGKIVDAIQEYSRKQMLKRGSFGQDCDLYEYLITYLEEAELF 693

Query: 144  --------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                    D  F  + P + VF + I  C + G  + A+ ++ +       ++     + 
Sbjct: 694  PEACQVFCDMQFLGIVPSQKVFPSFIFQCCRLGFPETAYQLMDDAARSDISLNILSCRV- 752

Query: 196  ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            A+++A        +A    K + K        ++   I+  +++G +E A +++D M KK
Sbjct: 753  AMIEAYGKLKLWQQAENFVKGL-KQESGVDRRIWNALIHAYAESGLYEHARAIFDIMIKK 811

Query: 256  GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            G +P    ++ ++      G+++  + ++QE ++  I +   +   ++ A + A +  + 
Sbjct: 812  GPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEV 871

Query: 316  LELYEHMKSIKLKPTVSTMNALITALCDGDQL---------------------------- 347
            +++Y  MK+    P +     +I+ LC   +                             
Sbjct: 872  MKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLM 931

Query: 348  -------PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
                    +T+EV   +   GL P+  TY+ L+V   R    E G  LL +  + G+ P 
Sbjct: 932  YTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPK 991

Query: 401  LVMFKCIIGMC--SRRYEKARTLNEHV 425
            L  +K ++     ++ +E+A  L E +
Sbjct: 992  LESYKILLAASGKAKLWEQADLLFEEM 1018


>gi|255557937|ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540761|gb|EEF42321.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1429

 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 149/331 (45%), Gaps = 18/331 (5%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
           T+  +N +M V A +        +L L++E G + D   + TLI    K+G   AM  NV
Sbjct: 209 TVQVYNAMMGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAG---AMTPNV 265

Query: 151 -------------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
                        +PD + +N LI+AC +   ++ A  V  +M  E H   PD  T  A+
Sbjct: 266 AIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAVKVFDDM--EAHYCQPDLWTYNAM 323

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +      G   +A +++K +           Y   +   ++ G+ +    + ++M + G 
Sbjct: 324 ISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGF 383

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
           I DE+  + +I   G  G+   A ++ ++ K  G +   I+Y+ L+ +   A    +A  
Sbjct: 384 IRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAAN 443

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           +   M +I +KPT+ T +ALI       Q  +  E    M+  G+ P+ + YS++L    
Sbjct: 444 VMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFL 503

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           R D+    +ML  +   DG+ P+  ++  ++
Sbjct: 504 RFDEATKAMMLYREMVRDGITPDPTVYGAML 534



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 159/340 (46%), Gaps = 16/340 (4%)

Query: 90  PTLSTFNMLMS--VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--- 144
           P L +FN L++  + A +     A ++L  V+ +GL+ D   Y TLI+ C++   ++   
Sbjct: 243 PDLVSFNTLINARLKAGAMTPNVAIELLNEVRRSGLRPDIITYNTLISACSRESNLEEAV 302

Query: 145 AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            +F+++     +PD   +NA+I+  G+ G   +A  +  E+ ++ +   PD +T  +L+ 
Sbjct: 303 KVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYF--PDAVTYNSLLY 360

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A A  G VD+ +E+   + +         Y   I+   + G    A  +Y DM   G  P
Sbjct: 361 AFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTP 420

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D +  + LID  G A K+  A  ++ E  N G+   + +YS+L+   + A    +A E +
Sbjct: 421 DAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETF 480

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M+   ++P     + ++      D+  K M +  +M   G+ P+   Y  +L    R+
Sbjct: 481 DCMRRSGIRPDQLAYSVMLDVFLRFDEATKAMMLYREMVRDGITPDPTVYGAMLRNLGRE 540

Query: 380 DDVEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSRRYEKA 418
           + VE    ++   +E  G+ P  +    + G C   YE A
Sbjct: 541 NKVEDIQRIIRDMEEVCGMNPQAIASILVKGEC---YEDA 577



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/373 (23%), Positives = 166/373 (44%), Gaps = 24/373 (6%)

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
           RA +V   +N   H   P+   +  ++     A Q   A E++ +  +  +  T +VY  
Sbjct: 158 RALEVFEWLNLR-HWYSPNARMLATILAVLGKANQEALAVEIF-IRAESTVDNTVQVYNA 215

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV--EAAFEILQEAKN 289
            +   ++TG +     + D M ++G  PD V  + LI+    AG +    A E+L E + 
Sbjct: 216 MMGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIELLNEVRR 275

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            G+   II+Y++L+ ACS   N ++A+++++ M++   +P + T NA+I+         K
Sbjct: 276 SGLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGK 335

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
             ++  +++S G  P+ +TY+ LL A  R+ +V+    + ++  + G I + + +  II 
Sbjct: 336 AEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIH 395

Query: 410 MCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIP 457
           M  ++ +    L  +     SGR      +T L            A  V  E +  G  P
Sbjct: 396 MYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKP 455

Query: 458 TVEVVSKVL-GCLQLPYNADIRERL--VENLGVSADALKRSNLCSLIDGFGEYD--PRAF 512
           T+   S ++ G  +     +  E    +   G+  D L  S    ++D F  +D   +A 
Sbjct: 456 TLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYS---VMLDVFLRFDEATKAM 512

Query: 513 SLLEEAASFGIVP 525
            L  E    GI P
Sbjct: 513 MLYREMVRDGITP 525



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 90/424 (21%), Positives = 176/424 (41%), Gaps = 39/424 (9%)

Query: 74  QKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           Q+A+ E F +  L    +P       +++V   +     A ++  +  E+ +    ++Y 
Sbjct: 157 QRAL-EVFEWLNLRHWYSPNARMLATILAVLGKANQEALAVEIF-IRAESTVDNTVQVYN 214

Query: 132 TLITTCAKSG---KVDAMFENVK-----PDRVVFNALITACGQSGAV--DRAFDVLAEMN 181
            ++   A++G   KV  M + ++     PD V FN LI A  ++GA+  + A ++L E+ 
Sbjct: 215 AMMGVYARTGRFNKVQGMLDLMRERGCEPDLVSFNTLINARLKAGAMTPNVAIELLNEVR 274

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
                + PD IT   L+ AC+    ++ A +V+  +  +  +     Y   I+   + G 
Sbjct: 275 RS--GLRPDIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGF 332

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
              A  ++ ++  KG  PD V  ++L+      G V+   EI  E    G     ++Y++
Sbjct: 333 SGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNT 392

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           ++           AL+LY  MK     P   T   LI +L   +++ +   V+S+M ++G
Sbjct: 393 IIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIG 452

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
           + P   TYS L+    R              +  G+ P+ + +  ++ +  R  E  +  
Sbjct: 453 VKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVFLRFDEATK-- 510

Query: 422 NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERL 481
                                A+M+YRE +  G  P   V   +L  L      +  +R+
Sbjct: 511 ---------------------AMMLYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRI 549

Query: 482 VENL 485
           + ++
Sbjct: 550 IRDM 553



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 151/346 (43%), Gaps = 18/346 (5%)

Query: 88   PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL---KADCKLYTTLITTCAKSGKVD 144
            P+PT+ + N L+         E  + V + +Q+ G    K+   L        +   +  
Sbjct: 801  PSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSILLILDAFARVSNIAEAK 860

Query: 145  AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             +++ +K     P   ++  +I    +   V     ++ EM  E     PD     ++++
Sbjct: 861  KIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEM--EEAGFRPDLSIWNSMLR 918

Query: 200  ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                     +  ++Y+ I +  ++   + Y   I    +    E  CS+  +M + G+ P
Sbjct: 919  LYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEP 978

Query: 260  DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
                  +LI   G    V  A E+ +E  ++G  +    Y  +M    N+ N  KA +L 
Sbjct: 979  KLDTYKSLIAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYRNSGNHSKAEKLL 1038

Query: 320  EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
              MK   ++PT++TM+ L+ +     Q  +  +VL+++K +GL  +T+ YS ++ A  + 
Sbjct: 1039 SMMKDAGVEPTIATMHLLMVSYGSSGQPQEAEKVLTNLKEMGLSLSTLPYSSVIDAYLKN 1098

Query: 380  DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
             D  VG+  L + K++G+ P+  ++ C I        +A +L+EH 
Sbjct: 1099 KDYSVGIQKLVEMKKEGLEPDHRIWTCFI--------RAASLSEHT 1136



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 91/446 (20%), Positives = 173/446 (38%), Gaps = 84/446 (18%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMS 100
           I+LL ++ R GL   D + +    + C  +  ++EA + F  +      P L T+N ++S
Sbjct: 267 IELLNEVRRSGLRP-DIITYNTLISACSRESNLEEAVKVFDDMEAHYCQPDLWTYNAMIS 325

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--------------- 145
           V      S  A Q+ + ++  G   D   Y +L+   A+ G VD                
Sbjct: 326 VYGRCGFSGKAEQLFKELESKGYFPDAVTYNSLLYAFAREGNVDKVKEICNEMVQMGFIR 385

Query: 146 -----------------------MFENVK-----PDRVVFNALITACGQSGAVDRAFDVL 177
                                  ++ ++K     PD + +  LI + G++  +  A +V+
Sbjct: 386 DEMTYNTIIHMYGKQGQHGLALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVM 445

Query: 178 AEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
           +EM N  V P      T  AL+   A AGQ   A E +  + +  I+     Y++ ++  
Sbjct: 446 SEMLNIGVKPT---LRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVF 502

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVG 295
            +  +   A  +Y +M + G+ PD     A++   G   KVE    I+++ +   G++  
Sbjct: 503 LRFDEATKAMMLYREMVRDGITPDPTVYGAMLRNLGRENKVEDIQRIIRDMEEVCGMNPQ 562

Query: 296 IISYSSLMGACS-----------------NAKNWQ-------------KALELYEHMKSI 325
            I+   + G C                  +++N               +AL+L + +K  
Sbjct: 563 AIASILVKGECYEDAAGMLRLAISGSDEIDSENLLSILSSYSSSGRQAEALDLLQFLKGH 622

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSILLVACERKDDVEV 384
             K       A I  LC   QL   ++  +D +       + T Y  L+  CE  +    
Sbjct: 623 VSKSNQLVAEASIVTLCKAKQLDAALKEYNDTREFDWFTGSCTMYESLIQCCEENEFTAE 682

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGM 410
              + S  + +GV P+  +++ ++ M
Sbjct: 683 ASQIFSDMRFNGVKPSKSLYRSMVLM 708



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 61/297 (20%), Positives = 133/297 (44%), Gaps = 9/297 (3%)

Query: 127 CKLYTTLITTC------AKSGKV--DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLA 178
           C +Y +LI  C      A++ ++  D  F  VKP + ++ +++    + G  + A  ++ 
Sbjct: 664 CTMYESLIQCCEENEFTAEASQIFSDMRFNGVKPSKSLYRSMVLMYCKMGFPETAHYLID 723

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
               E  P D   I + A+++         +A  +   + +       +V+   I   + 
Sbjct: 724 LAEIEGMPFDKISIDV-AVIETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAA 782

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
           +G +E A +V++ M + G  P    ++ L+      G++E  + + QE ++ G  +   S
Sbjct: 783 SGCYEQARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSS 842

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
              ++ A +   N  +A ++Y+ MK+    PT+     +I  LC G ++     ++++M+
Sbjct: 843 ILLILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEME 902

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 415
             G  P+   ++ +L      DD    + +  + KEDG+ P+   +  +I M  R +
Sbjct: 903 EAGFRPDLSIWNSMLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDH 959



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 55/280 (19%), Positives = 107/280 (38%), Gaps = 39/280 (13%)

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN-IKGTP 226
           G    A D+L  +    H    + +   A +     A Q+D A + Y    +++   G+ 
Sbjct: 607 GRQAEALDLLQFLKG--HVSKSNQLVAEASIVTLCKAKQLDAALKEYNDTREFDWFTGSC 664

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
            +Y   I CC +      A  ++ DM   GV P +    +++      G  E A  ++  
Sbjct: 665 TMYESLIQCCEENEFTAEASQIFSDMRFNGVKPSKSLYRSMVLMYCKMGFPETAHYLIDL 724

Query: 287 AKNQGISVGIISYS-SLMGACSNAKNWQKALEL--------------------------- 318
           A+ +G+    IS   +++      K WQKA  L                           
Sbjct: 725 AEIEGMPFDKISIDVAVIETYGKLKLWQKAESLVGNLRQRCTNVDRKVWNALIQAYAASG 784

Query: 319 -YEHMKSI-------KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            YE  +++          PTV ++N L+ AL    +L +   V  +++ +G   +  +  
Sbjct: 785 CYEQARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLEELYVVTQEIQDMGFQISKSSIL 844

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
           ++L A  R  ++     +    K  G  P + +++ +IG+
Sbjct: 845 LILDAFARVSNIAEAKKIYQGMKAAGYFPTMHLYRIMIGL 884



 Score = 46.2 bits (108), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 12/215 (5%)

Query: 89   NPTLSTFNMLMSV-CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---D 144
             P   T+N L+ + C   +  EG   ++  ++  GL+     Y +LI    K   V   +
Sbjct: 942  QPDEDTYNTLIVMYCRDHRPEEGC-SLMHEMRRIGLEPKLDTYKSLIAAFGKQQLVVDAE 1000

Query: 145  AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             +FE +     K DR  ++ ++     SG   +A  +L+ M      V+P   T+  LM 
Sbjct: 1001 ELFEELLSKGSKLDRSFYHIMMKIYRNSGNHSKAEKLLSMMKDA--GVEPTIATMHLLMV 1058

Query: 200  ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            +  ++GQ   A +V   + +  +  +   Y+  I+   +  D+        +M K+G+ P
Sbjct: 1059 SYGSSGQPQEAEKVLTNLKEMGLSLSTLPYSSVIDAYLKNKDYSVGIQKLVEMKKEGLEP 1118

Query: 260  DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
            D    +  I  A  +     A  +LQ  ++ G  +
Sbjct: 1119 DHRIWTCFIRAASLSEHTHDAILLLQALQDSGFDL 1153


>gi|387191507|gb|AFJ68617.1| pentatricopeptide repeat-containing protein, partial
           [Nannochloropsis gaditana CCMP526]
          Length = 646

 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 168/371 (45%), Gaps = 51/371 (13%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIK------EAFRFFK----LVPNPTLSTFN 96
            L D+ R+G    D+V    F  + K   ++       E  R  K    +VP+  + +F 
Sbjct: 267 FLRDLSRRGFAP-DRVT---FNTILKHHASMGKEALALETLRMMKDQAGIVPD--VVSFT 320

Query: 97  MLMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITTCAKSGK---VDAMFENVKP 152
            +++ C   +D +GA +VL +  QE+G++ D ++YT  +  CA +G+   V  +FE +K 
Sbjct: 321 TVITACG--RDWDGAMRVLAQAEQESGVEKDARMYTAAMRVCANAGRRREVLELFERMKA 378

Query: 153 ----------------------DR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
                                 DR    + +NA++ A        +A  VL EM   V  
Sbjct: 379 MQATQEKRKGGKERKGEGESEEDRLSVLIAYNAVLEALKTDKEWRQALQVLQEMR-RVGL 437

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           V P+ +    +M A A AG+   A  + K +    +      YT AI    ++ D     
Sbjct: 438 V-PNVVNHNTVMDAIAEAGEAGEALALLKQMKVSRVPADKRTYTAAIKAMIKSADVLQGR 496

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGA 305
            ++++M   G+ PD V  + L++  G AG  E   E++Q+ ++ +G    + ++++++ A
Sbjct: 497 ELFEEMCAAGITPDAVTYTTLMELYGQAGNKEQMEELVQQMSRKRGFPRDVRAFTAVIRA 556

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
              A  W++ALEL   MK+  +KPTV +    + AL    +  +  E+L  MK  G+ PN
Sbjct: 557 YGRAGLWREALELLGTMKARNVKPTVVSYGTAMAALAASGRHVEAFELLEAMKREGVEPN 616

Query: 366 TITYSILLVAC 376
            +       AC
Sbjct: 617 QVVLEWATEAC 627



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 151/358 (42%), Gaps = 51/358 (14%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------V 143
           T +    +++ C   +D +G  Q+     + GL     L   ++T  AK+GK       +
Sbjct: 172 TPAELKSVVNGCFRRQDWKGLRQLA--GSDNGLPLSKDLLDMMVTVTAKAGKSRTARALM 229

Query: 144 DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-------PDHITIG 195
           D M    +  D   +NAL+ A      +  A   L +   E    D       PD +T  
Sbjct: 230 DLMILRGIVLDVKSYNALLPAV-----LAEAPPFLQQEAVETFLRDLSRRGFAPDRVTFN 284

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMT 253
            ++K  A+ G+   A E  +M+ K      P+V  +T  I  C +  DW+ A  V     
Sbjct: 285 TILKHHASMGKEALALETLRMM-KDQAGIVPDVVSFTTVITACGR--DWDGAMRVLAQAE 341

Query: 254 KK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQ----------------EAKNQG----- 291
           ++ GV  D    +A +    +AG+     E+ +                E K +G     
Sbjct: 342 QESGVEKDARMYTAAMRVCANAGRRREVLELFERMKAMQATQEKRKGGKERKGEGESEED 401

Query: 292 -ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
            +SV +I+Y++++ A    K W++AL++ + M+ + L P V   N ++ A+ +  +  + 
Sbjct: 402 RLSV-LIAYNAVLEALKTDKEWRQALQVLQEMRRVGLVPNVVNHNTVMDAIAEAGEAGEA 460

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + +L  MK   +  +  TY+  + A  +  DV  G  L  +    G+ P+ V +  ++
Sbjct: 461 LALLKQMKVSRVPADKRTYTAAIKAMIKSADVLQGRELFEEMCAAGITPDAVTYTTLM 518


>gi|115466932|ref|NP_001057065.1| Os06g0199100 [Oryza sativa Japonica Group]
 gi|51091829|dbj|BAD36643.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113595105|dbj|BAF18979.1| Os06g0199100 [Oryza sativa Japonica Group]
          Length = 1283

 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 150/334 (44%), Gaps = 12/334 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG------KV 143
           PT+  FN +M V A S   + A Q+L  +++  ++ D   + TLI   AKSG       +
Sbjct: 59  PTVQVFNAMMGVYARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCLAAGVAL 118

Query: 144 DAMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           + + E     ++PD + +N LI+AC Q   +D A  V  EM A      PD  T  A++ 
Sbjct: 119 ELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIAS--ECRPDLWTYNAMVS 176

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G+   A  ++K + +   +     Y   +   ++ GD E    V +++ K G   
Sbjct: 177 VHGRCGKAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRK 236

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D +  + +I   G  G+++ A  +  E +  G +   ++Y+ L+ +        +A ++ 
Sbjct: 237 DGITYNTMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVL 296

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E M    LKPT+ T +ALI A     +          M   G+ P+ + Y ++L    R 
Sbjct: 297 EEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARS 356

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           D+    ++L     +DG  P+  +++ ++   ++
Sbjct: 357 DETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAK 390



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 145/311 (46%), Gaps = 21/311 (6%)

Query: 89  NPTLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-- 144
            P L +FN L++  A S    +  A ++L  V++AGL+ D   Y TLI+ C++   +D  
Sbjct: 93  EPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDA 152

Query: 145 -AMFENV-----KPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            A+FE +     +PD   +NA+++    CG++   +  F  L E   +     PD +T  
Sbjct: 153 VAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQ-----PDAVTYN 207

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+ A A  G V+R   V + + K   +     Y   I+   + G  + A  +YD+M   
Sbjct: 208 SLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAI 267

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  PD V  + L+D  G   ++  A ++L+E  + G+   ++++S+L+ A + +     A
Sbjct: 268 GCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDA 327

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
              ++ M    +KP       ++      D+  K M +   M   G  P+   Y +LL A
Sbjct: 328 ERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAA 387

Query: 376 CER---KDDVE 383
             +    D++E
Sbjct: 388 LAKGNEHDEIE 398



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 16/336 (4%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P PT+ + N +M         +  + V++ +Q+  +K        ++   AK+G V   F
Sbjct: 653 PLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDV---F 709

Query: 148 ENVK-----------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           E +K           P+  ++  +I+    +        ++AEM  E     PD + +  
Sbjct: 710 EVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEM--EGAGFKPDLVVLNT 767

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+      G  DR  EVY  I +  ++   + Y   I   S+    E   ++  +M K+G
Sbjct: 768 LLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRG 827

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + P       L+  +G A   E A  + +E + +G  +    Y  +M    NA+N  KA 
Sbjct: 828 LTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAE 887

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            L   MK   ++PT++TM+ L+T+        +  +VL+ +KS  L  +T+ YS +L A 
Sbjct: 888 HLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVLDAY 947

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
            R  D  +G+  L + K DGV P+  ++   I   S
Sbjct: 948 LRNRDYSLGITKLLEMKRDGVEPDHQVWTSFIRAAS 983



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 115/529 (21%), Positives = 202/529 (38%), Gaps = 104/529 (19%)

Query: 75  KAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           KA +    F +LV     P   T+N L+   A   D E   +V   + +AG + D   Y 
Sbjct: 183 KAQEAELMFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYN 242

Query: 132 TLITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           T+I    K G++D    +++ ++     PD V +  L+ + G+   +  A  VL EM   
Sbjct: 243 TMIHMYGKMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADA 302

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
              + P  +T  AL+ A A +G+ D A   +  + +  +K     Y + ++  +++ +  
Sbjct: 303 --GLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESGVKPDRLAYLVMLDVFARSDETR 360

Query: 244 FACSVYDDMTKKGVIPD----EVFLSALI------DFAGHAGKVEAAFE----------I 283
               +Y  M K G  PD    +V L+AL       +  G    +EA FE          I
Sbjct: 361 KLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIEGVIQDMEAVFEMNPLVISSILI 420

Query: 284 LQEAKNQGISV-----------------------------------------------GI 296
             E  +QG S+                                                +
Sbjct: 421 KAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKMGKHEKGLSLLEWIRQHVPNSHNL 480

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTMNALITALCDGDQLPKTMEV 353
           IS  S+M  C N K    A++ Y   + +K             LIT L + +  P+  +V
Sbjct: 481 ISECSIMLLCKNGK-IVDAIQEYSRKQMLKRGSFGQDCDLYEYLITYLEEAELFPEACQV 539

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             DM+ LG+ P+   Y  ++  C R    E    L+  A    +  N++   C + M   
Sbjct: 540 FCDMQFLGIVPSQKIYQSIIYTCCRLGFPETAYQLMDDAARSDISLNIL--SCRVAMIE- 596

Query: 414 RYEKARTLNEHVLSFNSGRPQ---IENK-WTSL------------ALMVYREAIVAGTIP 457
            Y K + L +   +F  G  Q   ++ + W +L            A  ++   I  G +P
Sbjct: 597 AYGKLK-LWQQAENFVKGLKQESGVDRRIWNALIHAYAESGLYEHARAIFDIMIKKGPLP 655

Query: 458 TVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 506
           TVE V+ ++  L +    D    +V+ L      + +S +  +++ F +
Sbjct: 656 TVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAK 704



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/383 (20%), Positives = 156/383 (40%), Gaps = 38/383 (9%)

Query: 50  DMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109
           DM+  G++   K+Y +  +  C+    +      ++L+ +   S  ++ +  C  +    
Sbjct: 542 DMQFLGIVPSQKIYQSIIYTCCR----LGFPETAYQLMDDAARSDISLNILSCRVAMIE- 596

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGA 169
            A+  L+L Q+A                     V  + +    DR ++NALI A  +SG 
Sbjct: 597 -AYGKLKLWQQA------------------ENFVKGLKQESGVDRRIWNALIHAYAESGL 637

Query: 170 VDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
            + A   FD++ +      P+ P   ++  +M+A    G++D    V + +   +IK + 
Sbjct: 638 YEHARAIFDIMIKKG----PL-PTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISK 692

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
               + +   ++ GD      +Y+ M   G +P+      +I    H  +      ++ E
Sbjct: 693 STVLLMLEAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAE 752

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            +  G    ++  ++L+   +   N+ + +E+Y  +    L+P   T N LI       +
Sbjct: 753 MEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFR 812

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
             +   +L +M   GL P   +Y ILL A  +    E   +L  + +  G   N    + 
Sbjct: 813 PEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLN----RS 868

Query: 407 IIGMCSRRYEKARTLN--EHVLS 427
           I  M  + Y  AR  +  EH+LS
Sbjct: 869 IYHMMMKIYRNARNHSKAEHLLS 891



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 72/387 (18%), Positives = 159/387 (41%), Gaps = 50/387 (12%)

Query: 87  VPNP-TLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           VPN   L +   +M +C + K  D+   +   ++++      DC LY  LIT   ++   
Sbjct: 474 VPNSHNLISECSIMLLCKNGKIVDAIQEYSRKQMLKRGSFGQDCDLYEYLITYLEEAELF 533

Query: 144 --------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                   D  F  + P + ++ ++I  C + G  + A+ ++   +A    +  + ++  
Sbjct: 534 PEACQVFCDMQFLGIVPSQKIYQSIIYTCCRLGFPETAYQLMD--DAARSDISLNILSCR 591

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
             M       ++ +  E +    K        ++   I+  +++G +E A +++D M KK
Sbjct: 592 VAMIEAYGKLKLWQQAENFVKGLKQESGVDRRIWNALIHAYAESGLYEHARAIFDIMIKK 651

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G +P    ++ ++      G+++  + ++QE ++  I +   +   ++ A + A +  + 
Sbjct: 652 GPLPTVESVNGMMRALIVDGRLDELYVVVQELQDLDIKISKSTVLLMLEAFAKAGDVFEV 711

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQL---------------------------- 347
           +++Y  MK+    P +     +I+ LC   +                             
Sbjct: 712 MKIYNGMKAAGYLPNMHLYRIMISLLCHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLM 771

Query: 348 -------PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
                   +T+EV   +   GL P+  TY+ L+V   R    E G  LL +  + G+ P 
Sbjct: 772 YTGTGNFDRTIEVYHSILEAGLEPDEDTYNTLIVMYSRNFRPEEGFTLLYEMGKRGLTPK 831

Query: 401 LVMFKCIIGMC--SRRYEKARTLNEHV 425
           L  +K ++     ++ +E+A  L E +
Sbjct: 832 LESYKILLAASGKAKLWEQADLLFEEM 858


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 92/385 (23%), Positives = 174/385 (45%), Gaps = 16/385 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L R GRI E   LL+ M  +G       Y      +C+  + + EA      +PNP    
Sbjct: 285 LCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQ-VDEARALLNKIPNPNTVL 343

Query: 95  FNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           +N L+S   AS +  E    +   +  AG + D   +  +I    K G + +  E     
Sbjct: 344 YNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEM 403

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                +P+ + +  LI    + G ++ A +++  M+A+   +  + +    L+ A    G
Sbjct: 404 VAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAK--GLSLNTVGYNCLICALCKDG 461

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            ++ A +++  +     K  P++YT    IN   +    E A S+Y DM  +GVI + V 
Sbjct: 462 NIEEALQLFGEMSGKGCK--PDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVT 519

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + L+        ++ AF+++ E   +G  +  I+Y+ L+ A       +K L L+E M 
Sbjct: 520 YNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEML 579

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              + PT+ + N LI+ LC   ++   ++ L DM   GL P+ +TY+ L+    +   V+
Sbjct: 580 GKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQ 639

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
               L ++ + +G+ P+ + +  +I
Sbjct: 640 EASNLFNKLQSEGIRPDAITYNTLI 664



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 185/414 (44%), Gaps = 21/414 (5%)

Query: 14  PNGKHANYAHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFN 69
           PN  +   +  VS  ++++  +++       +     LL DM + G +    +Y      
Sbjct: 190 PNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHA 249

Query: 70  VCKSQKAIKEAFRF----FKLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           +C++ + + EA +     F +   P + TFN ++  +C + +  E A  + R++   G  
Sbjct: 250 LCENNR-VSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLR-GFS 307

Query: 125 ADCKLYTTLITTCAKSGKVD---AMFENV-KPDRVVFNALITACGQSGAVDRAFDVLAEM 180
            D   Y  L+    + G+VD   A+   +  P+ V++N LI+    SG  + A D+L   
Sbjct: 308 TDALTYGYLMHGLCRMGQVDEARALLNKIPNPNTVLYNTLISGYVASGRFEEAKDLLYN- 366

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
           N  +   +PD  T   ++      G +  A E+   +     +     YTI IN   + G
Sbjct: 367 NMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQG 426

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
             E A  + + M+ KG+  + V  + LI      G +E A ++  E   +G    I +++
Sbjct: 427 RLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFN 486

Query: 301 SLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           SL+ G C N K  ++AL LY  M    +     T N L+ A    D + +  +++ +M  
Sbjct: 487 SLINGLCKNHK-MEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLF 545

Query: 360 LGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            G CP + ITY+ L+ A  +   VE GL L  +    G+ P ++    +I G+C
Sbjct: 546 RG-CPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLC 598



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/295 (23%), Positives = 130/295 (44%), Gaps = 16/295 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T+ +L++        E A +++  +   GL  +   Y  LI    K G ++   + 
Sbjct: 410 PNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQL 469

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                    KPD   FN+LI    ++  ++ A  +  +M  E   V  + +T   L+ A 
Sbjct: 470 FGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLE--GVIANTVTYNTLVHAF 527

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                 D  ++ +K++ +   +G P     Y   I    +TG  E    ++++M  KG+ 
Sbjct: 528 L---MRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIF 584

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P  +  + LI      GKV  A + LQ+  ++G++  I++Y+SL+       + Q+A  L
Sbjct: 585 PTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNL 644

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +  ++S  ++P   T N LI+  C          +L      G  PN +T+SIL+
Sbjct: 645 FNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILI 699



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 143/344 (41%), Gaps = 52/344 (15%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
           +PT+ TF ++M       + + A  +LR + + G   +  +Y TLI    ++ +V     
Sbjct: 202 SPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQ 261

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              D      +PD   FN +I    ++G +  A  +L  M   +     D +T G LM  
Sbjct: 262 LLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRM--LLRGFSTDALTYGYLMHG 319

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV-YDDMTKKGVIP 259
               GQVD AR +   I   N      +Y   I+    +G +E A  + Y++M   G  P
Sbjct: 320 LCRMGQVDEARALLNKIPNPNTV----LYNTLISGYVASGRFEEAKDLLYNNMVIAGYEP 375

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D    + +ID     G V+  + +                               ALEL 
Sbjct: 376 DAYTFNIMID-----GLVKKGYLV------------------------------SALELL 400

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M + + +P V T   LI   C   +L +  E+++ M + GL  NT+ Y+ L+ A  + 
Sbjct: 401 NEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKD 460

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
            ++E  L L  +    G  P++  F  +I G+C + + E+A +L
Sbjct: 461 GNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSL 504



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 126/295 (42%), Gaps = 21/295 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   +QGR+ E  +++  M  KGL      Y+     +CK    I+EA + F  +     
Sbjct: 420 NGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGN-IEEALQLFGEMSGKGC 478

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P + TFN L++    +   E A  +   +   G+ A+   Y TL+        +     
Sbjct: 479 KPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFK 538

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              + +F     D + +N LI A  ++GAV++   +  EM  +   + P  I+   L+  
Sbjct: 539 LVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGK--GIFPTIISCNILISG 596

Query: 201 CANAGQVDRAREVYK-MIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGV 257
               G+V+ A +  + MIH+     TP++  Y   IN   + G  + A ++++ +  +G+
Sbjct: 597 LCRTGKVNDALKFLQDMIHR---GLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGI 653

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            PD +  + LI    H G    A  +L +  + G     +++S L+        W
Sbjct: 654 RPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILINYIVKKIPW 708



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 7/228 (3%)

Query: 197 LMKACANAGQVDRA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +MK    AG   +A R +  M   Y+   T + Y + ++          A +V+ DM  +
Sbjct: 140 IMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKSYNVVLDILVDGDCPRVAPNVFYDMLSR 199

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           GV P       ++       +V++A  +L++    G     + Y +L+ A        +A
Sbjct: 200 GVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIYQTLIHALCENNRVSEA 259

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           L+L E M  +  +P V T N +I  LC   ++ +  ++L  M   G   + +TY  L+  
Sbjct: 260 LQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHG 319

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 421
             R   V+    LL++       PN V++  +I   + S R+E+A+ L
Sbjct: 320 LCRMGQVDEARALLNKIPN----PNTVLYNTLISGYVASGRFEEAKDL 363


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 187/418 (44%), Gaps = 46/418 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L R   + +   LLE+M  +G    + V +    N    Q   KEAF    ++  N   P
Sbjct: 46  LCRDNEVDKGCKLLEEMAGRGCAP-NAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPP 104

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
            L TF +++       + E AF+V+  + + G   D +++T L+    + G+VD  +   
Sbjct: 105 ELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAW--- 161

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
                 F   +   G +                     PD +T   ++     AG+++ A
Sbjct: 162 -----FFFQQVLLIGFT---------------------PDAVTYNTMVDGLYKAGRLEAA 195

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
             V +++ +     T   +TIA++  S+ G+   A   +D M + GV P+ V   ALID 
Sbjct: 196 GMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDG 255

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
              AGK++ A  +L++  +Q    G+ ++SSL+     A   ++A++L + M  +   P 
Sbjct: 256 LCKAGKLDIALGLLRDKNSQA---GMFAFSSLLHGLCQAHRLEEAIQLLKAMPCV---PN 309

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLL 389
           V   N+L+  LC   ++ +  E+   MK  G   + ITY+ILL   C+ +   E    + 
Sbjct: 310 VVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVE 369

Query: 390 SQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALM 445
              + +G  PN+V F  +I G+C+  R  +A  + E +++     P   N++T   L+
Sbjct: 370 LMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISP---NRFTYAFLL 424



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 129/537 (24%), Positives = 228/537 (42%), Gaps = 51/537 (9%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +YN L+    + G + + + LLE M   GL      +++    +CK Q+ I +A   F
Sbjct: 473 LVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQR-ILDAHNVF 531

Query: 85  KLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           K        P + T++ L+   +     + A Q+L  + E G +A+   Y+T++    K 
Sbjct: 532 KRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKV 591

Query: 141 GKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDH 191
           G+++     ++        PD V +N LI    +   +  A  +L EM  A  HP     
Sbjct: 592 GRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHP---SV 648

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T   L      +G+ D A E+   +           Y+  ++   + G    A   ++ 
Sbjct: 649 VTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEK 708

Query: 252 MTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           M +  V+ P  +  SALID    AG+++ A+E L+     G    ++++S L+    +A 
Sbjct: 709 MARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAG 768

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
                LEL+  M     K  +   NA+I A C   +      +L +MK+ G+  NT+T+ 
Sbjct: 769 RIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHG 828

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTLNEHVLSF 428
           I++ A    D ++  +       ED    + + +  +I   + SRR E+A  L   +++ 
Sbjct: 829 IVIKALCGNDRIDEAVSYFHSIPED--CRDEISYNTLITSLVASRRSEQALELLRAMVA- 885

Query: 429 NSGRPQIENKWT-----------SLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPY 473
           + G P   N  T            +A  + +E    G  P +   + ++  L    QLP 
Sbjct: 886 DGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPL 945

Query: 474 NADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVPCVS 528
             D  E ++    +  DA+  S   SLID F + D    A+ LL    S GI P ++
Sbjct: 946 ACDYFEEMLRK-NLKPDAIVYS---SLIDAFCKADKVDDAWKLLR---SSGIEPTIT 995



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 157/342 (45%), Gaps = 22/342 (6%)

Query: 92  LSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMF 147
           + T+N+L++ +C + +  + AF   R   + G +     Y+T+I    +  +VD    + 
Sbjct: 1   MVTYNVLINGLCKAGRVCD-AFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLL 59

Query: 148 ENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           E +      P+ V +N L+ A    G    AF +L  M A   P  P+ IT G ++K   
Sbjct: 60  EEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCP--PELITFGLIIKGLC 117

Query: 203 NAGQVDRA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             G+++ A R V +M+ +  +    E++T+ ++   + G  + A   +  +   G  PD 
Sbjct: 118 KEGEIEAAFRVVDEMVDRGFVPDV-EIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDA 176

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + ++D    AG++EAA  +LQ       S  + +++  +   S A N   A E ++ 
Sbjct: 177 VTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDS 236

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    + P   T +ALI  LC   +L   + +L D  S         +S LL    +   
Sbjct: 237 MPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQA---GMFAFSSLLHGLCQAHR 293

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
           +E  + LL   K    +PN+V F  ++ G+C +RR ++A  L
Sbjct: 294 LEEAIQLL---KAMPCVPNVVCFNSLMNGLCQARRVDEAFEL 332



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 118/531 (22%), Positives = 218/531 (41%), Gaps = 68/531 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L +  R+ E  +L + M+  G       Y+     +CK ++ I EA+R  +L+     
Sbjct: 318 NGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRR-IPEAYRHVELMRRTEG 376

Query: 89  -NPTLSTFNMLMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITTCAKSG---KV 143
            +P + TF+ L+    ++     A++V  R+V   G+  +   Y  L+    K+G   ++
Sbjct: 377 CSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRL 436

Query: 144 DAMFENV--------------------------KPDRVVFNALITACGQSGAVDRAFDVL 177
           +  FE +                          +P  V +N L+T   +SG V  A  +L
Sbjct: 437 EQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLL 496

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
             M      + PD IT  +++       ++  A  V+K   +   +     Y+  I+  S
Sbjct: 497 EFMIES--GLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLS 554

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           +    + A  +   M + G   + V  S ++D     G++E A  +L++ ++ G     +
Sbjct: 555 KMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAV 614

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +Y++L+      +  ++A+ L   M      P+V T   L   LC   +  + +E+L  M
Sbjct: 615 TYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYM 674

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ-AKEDGVIPNLVMFKCII-GMCSRRY 415
            + G  PN ITYS ++    +   V   L    + A+++ V P+++ +  +I G+C    
Sbjct: 675 AARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLC---- 730

Query: 416 EKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA 475
                         +GR  I+  +  L  M     I AG IP V   S ++  L      
Sbjct: 731 -------------KAGR--IDEAYEFLERM-----IRAGRIPDVVTFSILINGLCDAGRI 770

Query: 476 DIRERLVENL---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGI 523
           D    L   +   G  AD    + + +     GE+   A++LLEE  + GI
Sbjct: 771 DTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSA-AYALLEEMKTHGI 820



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 157/389 (40%), Gaps = 56/389 (14%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL-----VPN 89
            L R GR  E +++L+ M  +G       Y +    +CK+ + + EA  +F+      V  
Sbjct: 658  LCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGR-VTEALGYFEKMARDEVVA 716

Query: 90   PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P +  ++ L+  +C + +  E A++ L  +  AG   D   ++ LI     +G++D   E
Sbjct: 717  PHVIAYSALIDGLCKAGRIDE-AYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLE 775

Query: 149  --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      K D   +NA+I A    G    A+ +L EM  + H +  + +T G ++KA
Sbjct: 776  LFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEM--KTHGIAKNTVTHGIVIKA 833

Query: 201  -CANAGQVDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
             C N    DR  E     H        E+ Y   I     +   E A  +   M   G  
Sbjct: 834  LCGN----DRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALELLRAMVADGGS 889

Query: 259  PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
            PD      ++D    AG  E A ++LQE +++G S  + +Y+ ++   S AK    A + 
Sbjct: 890  PDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDY 949

Query: 319  YEHMKSIKLKPTVSTMNALITALCDGDQLP------------------------------ 348
            +E M    LKP     ++LI A C  D++                               
Sbjct: 950  FEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLRSSGIEPTITMYSTMVDSLCKNRG 1009

Query: 349  --KTMEVLSDMKSLGLCPNTITYSILLVA 375
              K +EV+ +MKS    P    ++ L  A
Sbjct: 1010 TDKALEVIREMKSKNCEPGIHIWTSLATA 1038



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 158/370 (42%), Gaps = 52/370 (14%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPN---- 89
            L + GR++E +   E M R  ++    + Y A    +CK+ + I EA+ F + +      
Sbjct: 693  LCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGR-IDEAYEFLERMIRAGRI 751

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
            P + TF++L++    +   +   ++   + E G KAD   Y  +I      G+  A   +
Sbjct: 752  PDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYAL 811

Query: 147  FENVKP--------------------------------------DRVVFNALITACGQSG 168
             E +K                                       D + +N LIT+   S 
Sbjct: 812  LEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASR 871

Query: 169  AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
              ++A ++L  M A+     PD      +M     AG  + A ++ + +           
Sbjct: 872  RSEQALELLRAMVADGG--SPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRT 929

Query: 229  YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
            YTI I+  S+      AC  +++M +K + PD +  S+LID    A KV+ A+++L   +
Sbjct: 930  YTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLL---R 986

Query: 289  NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            + GI   I  YS+++ +    +   KALE+   MKS   +P +    +L TA     ++ 
Sbjct: 987  SSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVD 1046

Query: 349  KTMEVLSDMK 358
            + +++++D++
Sbjct: 1047 EAVKLVNDLQ 1056



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 131/320 (40%), Gaps = 27/320 (8%)

Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y  LI    K+G+V   F           +P  V ++ +I    +   VD+   +L EM 
Sbjct: 4   YNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMA 63

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQ 238
                  P+ +T   L+ A    G   RA+E + ++ +    G P     + + I    +
Sbjct: 64  G--RGCAPNAVTYNTLVNALLGQG---RAKEAFSLLERMAANGCPPELITFGLIIKGLCK 118

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G+ E A  V D+M  +G +PD    + L+      G+V+ A+   Q+    G +   ++
Sbjct: 119 EGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVT 178

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y++++     A   + A  + + +      PTV T    +  L     L    E    M 
Sbjct: 179 YNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMP 238

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYE 416
             G+ PNT+TY  L+    +   +++ L LL           +  F  ++ G+C + R E
Sbjct: 239 QTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQA---GMFAFSSLLHGLCQAHRLE 295

Query: 417 KARTLNE------HVLSFNS 430
           +A  L +      +V+ FNS
Sbjct: 296 EAIQLLKAMPCVPNVVCFNS 315


>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
 gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
          Length = 888

 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 159/365 (43%), Gaps = 41/365 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
           P    F  L+   A ++D  GA   +  ++  GL+     Y+ LI    K+      D +
Sbjct: 286 PNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKL 345

Query: 147 FENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAE--VHPVD----------- 188
           F+  K      + ++++ +I A  QSG +DRA +++ EM  +    P+D           
Sbjct: 346 FKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTV 405

Query: 189 --------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                               P  I+ G L+      G+V +A  V K +  + IK   + 
Sbjct: 406 AQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKT 465

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y++ IN      D+  A S+++DM K G+ PD    + L++     G ++ A  I +  K
Sbjct: 466 YSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMK 525

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            + +     ++  ++   + A + ++AL+  + M+     PTV T NALI  L    Q+ 
Sbjct: 526 KERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVE 585

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + + VL  M   G+ PN  TY+I++       D+       ++ KE G+  ++ +++ ++
Sbjct: 586 RAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLL 645

Query: 409 GMCSR 413
             C +
Sbjct: 646 RACCK 650



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/383 (22%), Positives = 167/383 (43%), Gaps = 13/383 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLS 93
           + G +    +L+ +ME  G+     VYH+       +Q   K    F +L      P++ 
Sbjct: 370 QSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSII 429

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT--------TCAKSGKVDA 145
           ++  L+++         A  V + ++  G+K + K Y+ LI           A S   D 
Sbjct: 430 SYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDM 489

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           +   ++PDR ++N L+ A  + G +DRA  +   M  E   + P + T   +++  A AG
Sbjct: 490 IKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKE--RMQPSNRTFRPIIEGFAVAG 547

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            + RA +   ++ +     T   Y   I+   +    E A SV D M+  G+ P+E   +
Sbjct: 548 DMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYT 607

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            ++     +G +  AFE   + K  G+ + +  Y +L+ AC  +   Q AL +   M   
Sbjct: 608 IIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ 667

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           K+       N LI        + +  +++  MK  G+ PN  T++  + AC +  D++  
Sbjct: 668 KIPRNTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRA 727

Query: 386 LMLLSQAKEDGVIPNLVMFKCII 408
             ++ +  + G+ PN+  F  +I
Sbjct: 728 ENVIQEMADVGLKPNVKTFTTLI 750



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/355 (21%), Positives = 159/355 (44%), Gaps = 15/355 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
           N  ++ G++ + + + ++ME  G+   +K Y +   N          AF  F    K   
Sbjct: 436 NLYVKIGKVPKALAVSKEMESHGIKHNNKTY-SMLINGFIHLHDFANAFSIFEDMIKSGL 494

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P  + +N+L+       + + A ++   +++  ++   + +  +I   A +G +    +
Sbjct: 495 QPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALD 554

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            +         P  + +NALI    +   V+RA  VL +M+  +  + P+  T   +M+ 
Sbjct: 555 TLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMS--IAGIAPNEHTYTIIMRG 612

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A +G + +A E +  I +  +K    +Y   +  C ++G  + A +V  +M+ + +  +
Sbjct: 613 YAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRN 672

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID     G V  A +++++ K  GI   I +++S + AC  A + Q+A  + +
Sbjct: 673 TFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVIQ 732

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            M  + LKP V T   LI          + ++   +MKS GL P+   Y  L+ +
Sbjct: 733 EMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAYHCLVTS 787



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 138/339 (40%), Gaps = 10/339 (2%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF---- 147
           +  ++ +M     ++D +    V   ++E G +     Y  LI    K GKV        
Sbjct: 393 IDVYHSMMHGYTVAQDEKKCLIVFERLKECGFRPSIISYGCLINLYVKIGKVPKALAVSK 452

Query: 148 ----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 +K +   ++ LI           AF +  +M      + PD      L++A   
Sbjct: 453 EMESHGIKHNNKTYSMLINGFIHLHDFANAFSIFEDMIKS--GLQPDRAIYNLLVEAFCK 510

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G +DRA  +++ + K  ++ +   +   I   +  GD + A    D M + G  P  + 
Sbjct: 511 MGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMT 570

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +ALI       +VE A  +L +    GI+    +Y+ +M   + + +  KA E +  +K
Sbjct: 571 YNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIK 630

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              LK  V     L+ A C   ++   + V  +M    +  NT  Y+IL+    R+ DV 
Sbjct: 631 ESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVW 690

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
               L+ Q KEDG+ PN+  F   I  C +  +  R  N
Sbjct: 691 EAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAEN 729



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/347 (18%), Positives = 148/347 (42%), Gaps = 10/347 (2%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +P P+   F +++   A   D   A      ++  G++ +  ++T+L+   A +  +
Sbjct: 245 FERIPKPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 304

Query: 144 DAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                       E ++   V ++ LI   G++   + A  +  E   ++  ++   I   
Sbjct: 305 RGALSCVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLN--GIIYS 362

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++ A   +G +DRA E+ + + +  I    +VY   ++  +   D +    V++ + + 
Sbjct: 363 NIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFERLKEC 422

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  P  +    LI+     GKV  A  + +E ++ GI     +YS L+    +  ++  A
Sbjct: 423 GFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDFANA 482

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             ++E M    L+P  +  N L+ A C    + + + +   MK   + P+  T+  ++  
Sbjct: 483 FSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEG 542

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
                D++  L  L   +  G  P ++ +  +I    R+++  R ++
Sbjct: 543 FAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVS 589



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/321 (22%), Positives = 139/321 (43%), Gaps = 15/321 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPN 89
           N  I     +    + EDM + GL     +Y+      CK     +AI+   R  K    
Sbjct: 471 NGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQ 530

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P+  TF  ++   A + D + A   L L++ +G       Y  LI    +  +V      
Sbjct: 531 PSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSV 590

Query: 144 -DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M    + P+   +  ++     SG + +AF+   ++      +  D      L++AC
Sbjct: 591 LDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKES--GLKLDVYIYETLLRAC 648

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPD 260
             +G++  A  V + +    I     +Y I I+  ++ GD WE A  +   M + G+ P+
Sbjct: 649 CKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWE-AADLMKQMKEDGIPPN 707

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               ++ I+    AG ++ A  ++QE  + G+   + ++++L+   +      +AL+ +E
Sbjct: 708 IHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFE 767

Query: 321 HMKSIKLKPTVSTMNALITAL 341
            MKS  LKP  +  + L+T+L
Sbjct: 768 EMKSAGLKPDEAAYHCLVTSL 788



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 118/267 (44%), Gaps = 3/267 (1%)

Query: 143 VDAMFENV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           V + FE + KP R  F  ++    + G    A      M A    ++P+     +L+ A 
Sbjct: 241 VVSAFERIPKPSRREFGLMVVYYAKRGDKHHARATFENMRA--RGIEPNAFVFTSLVHAY 298

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A A  +  A    + +    ++ T   Y+I I    +T D E A  ++ +   K    + 
Sbjct: 299 AVARDMRGALSCVEEMKSEGLEMTVVTYSILIAGYGKTNDAESADKLFKEAKTKLDNLNG 358

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  S +I     +G ++ A E+++E +  GI   I  Y S+M   + A++ +K L ++E 
Sbjct: 359 IIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHGYTVAQDEKKCLIVFER 418

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +K    +P++ +   LI       ++PK + V  +M+S G+  N  TYS+L+       D
Sbjct: 419 LKECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHD 478

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
                 +     + G+ P+  ++  ++
Sbjct: 479 FANAFSIFEDMIKSGLQPDRAIYNLLV 505


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 171/364 (46%), Gaps = 24/364 (6%)

Query: 82  RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           R F+ +P P + TFN+++  +C   +  E     +R+ +  G   D   Y +LI    K 
Sbjct: 189 RLFEHLPAPNVFTFNIVIDFLCKQGELVEARALFVRM-KAMGCSPDVVTYNSLIDGYGKC 247

Query: 141 GK---VDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+   V+ +   ++      D V +NALI    + G +++A+    EM      V  + +
Sbjct: 248 GELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRL--GVMANVV 305

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGT-PE--VYTIAINCCSQTGDWEFACSVY 249
           T+   + A    G V   RE  K+  +  ++G  P    YT  ++   + G  + A  + 
Sbjct: 306 TLSTFVDAFCKEGLV---REAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLL 362

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           D+M  +G++P+ V  + ++D     GKV  A ++L   +  G+    + Y++L+      
Sbjct: 363 DEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMN 422

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
           KN ++AL+L   MK+  ++  VS    LI  LC   +L +   +L  M   GL PNT+ Y
Sbjct: 423 KNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIY 482

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSF 428
           + ++ A  +       + LL +  + G+ PN+V +  +I G+C     KA ++ E +  F
Sbjct: 483 TTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLC-----KAGSIYEAISHF 537

Query: 429 NSGR 432
           +  R
Sbjct: 538 DKMR 541



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 173/402 (43%), Gaps = 26/402 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN LI    + G + E   L+ +M + G    D V +    N       I++A+ +F  
Sbjct: 236 TYNSLIDGYGKCGELEEVELLVSEMRKSGC-AADVVTYNALINCFSKFGWIEKAYSYFGE 294

Query: 86  ------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                 +    TLSTF  + + C      E A ++   ++  G+  +   YT+L+    K
Sbjct: 295 MKRLGVMANVVTLSTF--VDAFCKEGLVRE-AMKLFAQMRVRGMMPNEFTYTSLVDGTCK 351

Query: 140 SGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           +G++D         + + + P+ V +  ++    + G V  A DVL+ M  E   V  + 
Sbjct: 352 AGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLM--ERAGVKANE 409

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +    L+         +RA ++   +    ++    +Y   I    +    + A S+   
Sbjct: 410 LLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHK 469

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M   G+ P+ V  + ++D    AGK   A  +L +  + G+   +++Y +L+     A +
Sbjct: 470 MDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGS 529

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +A+  ++ M+ + L P V     LI   C    L K + ++++M   G+  + + Y+ 
Sbjct: 530 IYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTS 589

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
           L+    ++ D++    L ++  E G+  +L  + C I G C+
Sbjct: 590 LIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCN 631



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 135/314 (42%), Gaps = 15/314 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN 96
           + GR+ + I LL++M  +GL+     Y      +CK  K +  A     L+    +    
Sbjct: 351 KAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGK-VAVADDVLSLMERAGVKANE 409

Query: 97  MLMSVCAS----SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---- 148
           +L +        +K+SE A  +L  ++  G++ D  LY TLI    K  K+D        
Sbjct: 410 LLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHK 469

Query: 149 ----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                ++P+ V++  ++ A  ++G    A  +L ++      + P+ +T  AL+     A
Sbjct: 470 MDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDS--GLQPNVVTYCALIDGLCKA 527

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G +  A   +  + +  +    +VYT  I+   + G    A  + ++M  KG+  D+V  
Sbjct: 528 GSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVY 587

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++LID     G ++ AF +  +    G+ + +  Y+  +    N    Q+A  +   M  
Sbjct: 588 TSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIG 647

Query: 325 IKLKPTVSTMNALI 338
             + P  +  N LI
Sbjct: 648 TGITPDKTAYNCLI 661



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 156/361 (43%), Gaps = 19/361 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVPNP 90
           ++G + E + L   M  +G++  +  Y +     CK+ + + +A           LVPN 
Sbjct: 316 KEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGR-LDDAIVLLDEMVHQGLVPNV 374

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI----TTCAKSGKVDAM 146
              T  M+  +C   K +  A  VL L++ AG+KA+  LYTTLI            +D +
Sbjct: 375 VTYTV-MVDGLCKEGKVAV-ADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLL 432

Query: 147 FE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
            E     ++ D  ++  LI    +   +D A  +L +M+     + P+ +    +M A  
Sbjct: 433 NEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDD--CGLRPNTVIYTTIMDAFF 490

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AG+   A  +   I    ++     Y   I+   + G    A S +D M + G+ P+  
Sbjct: 491 KAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQ 550

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + LID     G +  A  ++ E  ++G+S+  + Y+SL+       + Q A  L   M
Sbjct: 551 VYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKM 610

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               L+  +      I+  C+ + + +   VLS+M   G+ P+   Y+ L+   ++  ++
Sbjct: 611 IETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNM 670

Query: 383 E 383
           E
Sbjct: 671 E 671


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 169/383 (44%), Gaps = 44/383 (11%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
            L + G  +E +D+  +M   G+L    VY +    +C+  + +KEA  FFK         
Sbjct: 1095 LCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGR-LKEALEFFK--------- 1144

Query: 95   FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAMFENV-- 150
                        + EG           G+ AD   Y +LI   +++G  K    F N+  
Sbjct: 1145 ------------EMEGR----------GISADVYTYNSLIHGLSRAGLWKEVTWFLNLMV 1182

Query: 151  ----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
                 PD   F  LI    + G V  A  +L  M  +    +PD +T   LM      GQ
Sbjct: 1183 DRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGK--EPDILTYNTLMNGLCLVGQ 1240

Query: 207  VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            ++ A ++++ +    IK     Y I IN   +    + A   +++M  KG+ P  V  + 
Sbjct: 1241 LEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNT 1300

Query: 267  LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 325
            LI     +G+V  A ++  E +  G  + + +Y  L+ G C N  + ++A++L++ +K  
Sbjct: 1301 LIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNG-HLEEAMDLFQSIKKT 1359

Query: 326  KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + KP +   + L+  +C   +L +  +   ++   GL P+TI Y+IL+     K  +   
Sbjct: 1360 EHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEA 1419

Query: 386  LMLLSQAKEDGVIPNLVMFKCII 408
            + LL Q +E G +P+ + F  II
Sbjct: 1420 VKLLWQMEEKGCLPDSITFNVII 1442



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 100/446 (22%), Positives = 172/446 (38%), Gaps = 36/446 (8%)

Query: 68   FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
            F + K   AIK   R     P P   TFN L++  A        F + R + + G++ D 
Sbjct: 922  FGIIKLNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDL 981

Query: 128  KLYTTLITTCAK--------SGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
                 LI  C                +    +PD V    L+        +  A  +  E
Sbjct: 982  YTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDE 1041

Query: 180  MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
            M  +   +  D  T G L+     A +   A ++++ + K N KG    Y + I+   + 
Sbjct: 1042 MTKK--GLLGDAKTYGILINGLCKARKTGLAIKLHEKM-KGNCKGDVFTYGMIIDALCKD 1098

Query: 240  GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
            G    A  ++ +M   G++PD V  S+L+D     G+++ A E  +E + +GIS  + +Y
Sbjct: 1099 GMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTY 1158

Query: 300  SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
            +SL+   S A  W++       M      P   T   LI  LC   ++ +  ++L  M+ 
Sbjct: 1159 NSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRH 1218

Query: 360  LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKA 418
             G  P+ +TY+ L+        +E    L     + G+  N+  +  +I G C     K 
Sbjct: 1219 KGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYC-----KD 1273

Query: 419  RTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR 478
            + ++E    F   RP+                   G  P+    + ++G L         
Sbjct: 1274 QKIDEAFRFFEEMRPK-------------------GLKPSTVTYNTLIGALCQSGRVRTA 1314

Query: 479  ERLVENLGVSADALKRSNLCSLIDGF 504
            ++L   +      LK S  C L+DG 
Sbjct: 1315 QKLFVEMQTCGQFLKLSTYCVLLDGL 1340



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 165/376 (43%), Gaps = 17/376 (4%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            L R GR+ E ++  ++ME +G+      Y++    + ++    KE   F  L+ +    P
Sbjct: 1130 LCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRA-GLWKEVTWFLNLMVDRGFSP 1188

Query: 91   TLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
               TF +L+  +C   K  E A Q+L L++  G + D   Y TL+      G+++    +
Sbjct: 1189 DAFTFTILIDGLCKEGKVGE-AQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKL 1247

Query: 147  FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            FE+     +K +   +N LI    +   +D AF    EM  +   + P  +T   L+ A 
Sbjct: 1248 FESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPK--GLKPSTVTYNTLIGAL 1305

Query: 202  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              +G+V  A++++  +           Y + ++   + G  E A  ++  + K    P+ 
Sbjct: 1306 CQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNI 1365

Query: 262  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
               S L+D    AGK+E A++   E    G+    I+Y+ L+    N     +A++L   
Sbjct: 1366 EVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQ 1425

Query: 322  MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
            M+     P   T N +I  L   +++ + +++L +M++    P+    S+LL        
Sbjct: 1426 MEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQ 1485

Query: 382  VEVGLMLLSQAKEDGV 397
                L+ L  A + GV
Sbjct: 1486 WHAALVSLPNALQKGV 1501



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 103/243 (42%), Gaps = 19/243 (7%)

Query: 31   SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
            SYN LI    +  +I E     E+M  KGL      Y+     +C+S + ++ A + F  
Sbjct: 1262 SYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGR-VRTAQKLFVE 1320

Query: 87   VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            +        LST+ +L+     +   E A  + + +++   K + ++++ L+    ++GK
Sbjct: 1321 MQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGK 1380

Query: 143  VDAMFEN--------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
            ++  ++         ++PD + +N LI      G +  A  +L +M  E     PD IT 
Sbjct: 1381 LEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQM--EEKGCLPDSITF 1438

Query: 195  GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
              +++      ++  A ++ + +   N      V ++ +   S    W  A     +  +
Sbjct: 1439 NVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNALQ 1498

Query: 255  KGV 257
            KGV
Sbjct: 1499 KGV 1501


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 174/405 (42%), Gaps = 31/405 (7%)

Query: 30  HSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H+YN LIR     G++ + + +  DM+  GLL      +     +C+  + +  A + F+
Sbjct: 33  HTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQ-MSSALKLFR 91

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      PT ++ N+L+     +     A   L+ ++++        Y  ++       
Sbjct: 92  EMQAGPFLPTSASHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWEN 151

Query: 142 KVDAMFEN------------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
           K     E             V+PD   ++ L++A   SG +  A  + + M        P
Sbjct: 152 KSANRLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTC-----SP 206

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D +T   LM      GQ   A+ + K I K   +     Y+I INC  +    E A  V+
Sbjct: 207 DIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVF 266

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSN 308
             M +   +P+ V  + LI     AG +E A ++  E +  G    I++Y++L+ + C  
Sbjct: 267 MKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKK 326

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTI 367
                 A++L+  ++   L PT+ T N+LI   CD  +L + M+   +M+  G C PN I
Sbjct: 327 RGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEME--GKCAPNVI 384

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           TYSIL+    +   ++     L   K  G  P +V +  +I G C
Sbjct: 385 TYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFC 429



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 182/416 (43%), Gaps = 34/416 (8%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAFRF 83
           S+N L+R     GR+ + +  L+DM +         Y+     +C   KS   +++A  F
Sbjct: 104 SHNILLRGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEF 163

Query: 84  FKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           FK +      P L ++++L+S  +   DS    +   L        D   Y  L+    K
Sbjct: 164 FKEMKASGVEPDLESYHILLSALS---DSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCK 220

Query: 140 SGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            G+         + +    +P+   ++ +I    +   V+ A++V  +M  E + V P+ 
Sbjct: 221 IGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKM-IESNCV-PNA 278

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC-CSQTGDWEFACSVYD 250
           +T   L+     AG ++ A +++  + K   K T   Y   I+  C + G    A  +++
Sbjct: 279 VTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFN 338

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            +   G+ P  V  ++LI     A ++  A +   E + +  +  +I+YS L+      +
Sbjct: 339 KLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK-CAPNVITYSILIDGLCKVR 397

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             ++A +  E MK+    PTV T   LI   C   +L   +     MK  G  PNT+ ++
Sbjct: 398 RMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFN 457

Query: 371 IL---LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 421
            L   L   ER +D   GL LL     +G  P+++ + C+I G+CS  R E A+ L
Sbjct: 458 TLIDGLCKAERAND---GLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRL 510



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/378 (20%), Positives = 151/378 (39%), Gaps = 50/378 (13%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM 99
           R+ + ++  ++M+  G+    + YH     +  S +  +    F  +  +P + T+N+LM
Sbjct: 156 RLEQAMEFFKEMKASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCSPDIMTYNVLM 215

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVK 151
                   +  A  +++ + +AG + +   Y+ +I    K  KV+  +E        N  
Sbjct: 216 DGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCV 275

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNA----------------------------- 182
           P+ V FN LI    ++G ++ A  + AEM                               
Sbjct: 276 PNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVD 335

Query: 183 -----EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINC 235
                E   + P  +T  +L++   +A ++  A + +  +     K  P V  Y+I I+ 
Sbjct: 336 LFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEG---KCAPNVITYSILIDG 392

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
             +    + A    +DM   G  P  V    LI+     G++++A    ++ K  G +  
Sbjct: 393 LCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPN 452

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
            + +++L+     A+     L L  HM +   KP V T N LI+ LC  +++     +  
Sbjct: 453 TVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFD 512

Query: 356 DMKSLGLCPNTITYSILL 373
            M      PN  T++ L+
Sbjct: 513 GM---ACAPNVTTFNFLI 527



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 148/359 (41%), Gaps = 33/359 (9%)

Query: 18  HANY-AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           HA + A   S  + +YN L+    + G+  E   L++++ + G       Y       CK
Sbjct: 196 HALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCK 255

Query: 73  SQKAIKEAFR-FFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
             K ++EA+  F K++ +   P   TFN L++    +   E A ++   +++ G KA   
Sbjct: 256 LDK-VEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIV 314

Query: 129 LYTTLITT-CAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
            Y TLI + C K G V    +         + P  V +N+LI     +  +  A     E
Sbjct: 315 TYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDE 374

Query: 180 MNAEVHP-VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIA--INC 235
           M  +  P V    I I  L K       V R +E  K +      G TP V T    IN 
Sbjct: 375 MEGKCAPNVITYSILIDGLCK-------VRRMKEAAKTLEDMKAHGYTPTVVTYGGLING 427

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
             + G+ + A   ++ M   G  P+ V  + LID    A +      +L     +G    
Sbjct: 428 FCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPD 487

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
           +I+Y+ L+    +A   + A  L++ M      P V+T N LI  LC   ++ +   +L
Sbjct: 488 VITYNCLISGLCSANRVEDAQRLFDGMAC---APNVTTFNFLIRGLCAQKKVEEARNIL 543



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 110/288 (38%), Gaps = 72/288 (25%)

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           AL+    +A + D+A  ++K +           Y + I    + G    A SV+ DM   
Sbjct: 2   ALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSS 61

Query: 256 GVIPDEVFLSALI--------------------------DFAGH---------AGKVEAA 280
           G++P+   ++ L+                            A H         AG+V  A
Sbjct: 62  GLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDA 121

Query: 281 FEILQEAKNQGISVGIISYS-SLMGAC---SNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
              LQ+ +    SV   +Y+  L G C    +A   ++A+E ++ MK+  ++P + + + 
Sbjct: 122 LAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHI 181

Query: 337 LITALCDGDQLP-----------------------------KTMEVLSDMKSL---GLCP 364
           L++AL D  ++                              +T E  S MK +   G  P
Sbjct: 182 LLSALSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEP 241

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           N  TYSI++    + D VE    +  +  E   +PN V F  +I G C
Sbjct: 242 NVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFC 289



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%)

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           ++L+    +A+   +AL L++ + +    P   T N LI   C G Q+ + + V SDMKS
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
            GL PN  T + LL+       +   L L  + +    +P
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLP 100



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 53/109 (48%)

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           +AL+     A K + A  + +E      +    +Y+ L+          +A+ ++  MKS
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             L P  STMN L+  LC+  Q+   +++  +M++    P + +++ILL
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILL 109


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 157/332 (47%), Gaps = 13/332 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + TFN+LM+        + A  +   +++ GL+     + TLI    KSG ++  F  
Sbjct: 230 PNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRL 289

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V PD   ++ALI    +   ++ A  +  EM      + P+ +T   L+   
Sbjct: 290 KMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDR--GLVPNDVTFTTLINGQ 347

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+VD A E+Y+ +    +K    +Y   I+   + G +  A     +MTK+G+IPD+
Sbjct: 348 CKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDK 407

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
              + L+D +   G +E A E+ +E   +GI +  +++++++ G C + K       L E
Sbjct: 408 FTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLRE 467

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            +++  LKP   T   ++   C    +    ++L +M+S G  P  ITY++L+    ++ 
Sbjct: 468 MLRA-GLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQG 526

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            V+   MLL+     GV+P+ + +  ++ G C
Sbjct: 527 QVKNADMLLNAMLNLGVVPDDITYNILLQGHC 558



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 152/357 (42%), Gaps = 26/357 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ--------KAIKEAFRFF 84
           NRL ++G++ +   + +++ + GL      ++      CKS         K + E FR F
Sbjct: 240 NRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVF 299

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P + T++ L+         E A  + + + + GL  +   +TTLI    K+G+VD
Sbjct: 300 -----PDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVD 354

Query: 145 AMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
              E         +K D V++N LI    + G    A   + EM      + PD  T   
Sbjct: 355 LALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKR--GLIPDKFTYTT 412

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+      G ++ A E+ K + K  I+     +T  I+   + G    A     +M + G
Sbjct: 413 LLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAG 472

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD+   + ++D     G V+  F++L+E ++ G   G+I+Y+ LM         + A 
Sbjct: 473 LKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNAD 532

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            L   M ++ + P   T N L+   C   +L     V ++M   GL  +  +Y  LL
Sbjct: 533 MLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNVKTEM---GLVSDYASYRSLL 586



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/259 (24%), Positives = 113/259 (43%), Gaps = 20/259 (7%)

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS-------QTGDWEFACSV 248
           ALM      G V  A + +++  K+N+K       I  N C        +      A   
Sbjct: 167 ALMSVYTEFGYVSDAIQCFRLTKKHNLK-------IPFNGCKCLLERMIKMSSPMVALEF 219

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           Y ++   G  P+    + L++     GKV+ A  I  E +  G+    +S+++L+     
Sbjct: 220 YLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCK 279

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           + N ++   L   M+  ++ P V T +ALI  LC   QL     +  +M   GL PN +T
Sbjct: 280 SGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVT 339

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY-EKARTLNEHVL 426
           ++ L+    +   V++ L +  Q    G+  +LV++  +I G+C   Y  +AR     + 
Sbjct: 340 FTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEM- 398

Query: 427 SFNSGRPQIENKWTSLALM 445
              + R  I +K+T   L+
Sbjct: 399 ---TKRGLIPDKFTYTTLL 414



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 13/223 (5%)

Query: 245 ACSVYDDMTK-KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
           A SV+  + + KG +       AL+      G V  A +  +  K   + +       L+
Sbjct: 145 ASSVFASILETKGTLSSSFVFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCKCLL 204

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                  +   ALE Y  +      P V T N L+  LC   ++     +  +++  GL 
Sbjct: 205 ERMIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQ 264

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA--- 418
           P  ++++ L+    +  ++E G  L    +E  V P++  +  +I G+C   + E A   
Sbjct: 265 PTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHL 324

Query: 419 ------RTLNEHVLSFNSG-RPQIENKWTSLALMVYREAIVAG 454
                 R L  + ++F +    Q +N    LAL +Y++    G
Sbjct: 325 FKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKG 367


>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
          Length = 583

 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 169/358 (47%), Gaps = 23/358 (6%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAM 146
           + M++ + A     + A  +   +QE   K D  +Y +LI   +++G+         D +
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              + P R  +N +I ACG +G   +A ++  +M    + V PD +T   ++ A  N  Q
Sbjct: 74  RAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTE--NGVGPDLVTHNIVLSALKNGAQ 131

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVFL 264
             +A   ++++   N+        I I+C  + G    A  +++ M ++     PD V  
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTY 191

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++++      G+VE    I      +G+   I++Y+SL+GA ++    ++AL ++  +K 
Sbjct: 192 TSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKK 251

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             L+P + +  +L+ A     Q  K  EV + MK     PN ++Y+ L+ A      ++ 
Sbjct: 252 NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKE 311

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----RYE------KARTLNEHVLSFNSG 431
            + LL + ++DG+ P++V    ++  C R     R E      ++R ++ + +++NSG
Sbjct: 312 AVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSG 369



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 177/424 (41%), Gaps = 36/424 (8%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----N 89
           L++ G+  E I+L   M ER+     D V +    +       ++     F L+      
Sbjct: 161 LVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVK 220

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P +  +N L+   AS      A  +  L+++ GL+ D   YT+L+    +S + +   E 
Sbjct: 221 PNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREV 280

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  + KP++V +NALI A G +G +  A  +L EM  E   + PD ++I  L+ AC
Sbjct: 281 FNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEM--EKDGIQPDVVSISTLLAAC 338

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               Q+ R   + +      I      Y   I      GD+E A  +Y  M +  V PD 
Sbjct: 339 GRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESNVKPDA 398

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-----VGIISY-SSLMGACSN-----AK 310
           V  + LI  +   GK   +    ++  +  +S     +  I +    +G          +
Sbjct: 399 VTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEFLWTIRWLEESLGPVQRDGSKWIR 458

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM----KSLGLCPNT 366
           +W+ A E+ E++ S     +V T+N ++  L    +    M++   M     ++GL    
Sbjct: 459 DWKTASEMIEYLDSSLSSISVGTLNHVLNFLGKCGKTENMMKLFYKMVTSCSTVGLSTYA 518

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEH 424
           +    LLV  + +  +EV    L   ++ GV P L MF+ ++    R    + A T+ E 
Sbjct: 519 VVLRNLLVVGKWRKYIEV----LQWMEDSGVHPTLYMFQNVLPYIWRENGMDFAATMQEK 574

Query: 425 VLSF 428
           + S 
Sbjct: 575 ISSL 578



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 153/332 (46%), Gaps = 8/332 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC---AKSGKVDAM 146
           PT +T+N +++ C ++ + + A ++ + + E G+  D   +  +++     A+  K  + 
Sbjct: 79  PTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISY 138

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE     NV  D    N +I    + G    A ++   M        PD +T  ++M + 
Sbjct: 139 FEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSY 198

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              GQV+  + ++ ++    +K     Y   +   +  G    A ++++ + K G+ PD 
Sbjct: 199 CIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDI 258

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  ++L++  G + + E A E+  + K        +SY++L+ A  +A   ++A+ L   
Sbjct: 259 VSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHE 318

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+   ++P V +++ L+ A     Q+ +   +L   +S G+  NT+ Y+  + +     D
Sbjct: 319 MEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGD 378

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            E  L L +  +E  V P+ V +  +I   S+
Sbjct: 379 YEKALELYTSMRESNVKPDAVTYNILISGSSK 410



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 160/345 (46%), Gaps = 21/345 (6%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I      G   + ++L + M   G+   D V H    +  K+     +A  +F++
Sbjct: 83  TYNNVINACGAAGNWKKALELCKKMTENGV-GPDLVTHNIVLSALKNGAQYSKAISYFEI 141

Query: 87  V--PNPTLSTF--NMLMSVCASSKDSEGAFQVLRLVQEAGLKA--DCKLYTTLITTCAKS 140
           +   N T  TF  N+++           A ++   ++E   K   D   YT+++ +    
Sbjct: 142 MKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIY 201

Query: 141 GKVD---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+V+   A+F     E VKP+ V +N+L+ A    G    A  +   +    + + PD +
Sbjct: 202 GQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKK--NGLRPDIV 259

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +  +L+ A   + Q ++AREV+  + K + K     Y   I+     G  + A  +  +M
Sbjct: 260 SYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEM 319

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            K G+ PD V +S L+   G   ++     IL+ A+++GI +  ++Y+S + +  +  ++
Sbjct: 320 EKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDY 379

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +KALELY  M+   +KP   T N LI+      +  +++    DM
Sbjct: 380 EKALELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDM 424



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 129/275 (46%), Gaps = 20/275 (7%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           ++  +I    +   VD+A  +  EM  +     PD     +L+ A + AGQ   A  + +
Sbjct: 13  IYGMMIRLYARHNQVDQARGLFFEM--QEWRCKPDADIYNSLIHAHSRAGQWRWAINIME 70

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFA 271
            + +  I  T   Y   IN C   G+W+ A  +   MT+ GV PD     + LSAL + A
Sbjct: 71  DMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGA 130

Query: 272 GHAGKVEAAFEILQEAK--NQGISVGIISYSSL-MGACSNAKNWQKALELYEHMKSIKLK 328
            ++ K  + FEI++ A   +   ++ II +  + +G C       +A+EL+  M+  + K
Sbjct: 131 QYS-KAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCG------EAIELFNSMRERRTK 183

Query: 329 --PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
             P V T  +++ + C   Q+     +   M + G+ PN + Y+ LL A   +      L
Sbjct: 184 CPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREAL 243

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKAR 419
            + +  K++G+ P++V +  ++    R  + EKAR
Sbjct: 244 AIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAR 278



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 73/147 (49%)

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           ++Y + I   ++    + A  ++ +M +    PD    ++LI     AG+   A  I+++
Sbjct: 12  DIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMED 71

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
                I     +Y++++ AC  A NW+KALEL + M    + P + T N +++AL +G Q
Sbjct: 72  MLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILL 373
             K +     MK   +  +T T +I++
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIII 158


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/387 (25%), Positives = 169/387 (43%), Gaps = 16/387 (4%)

Query: 35  LIRQGRISECIDLLEDME-RKGLLDM---DKVYHARFFNVCKSQKAIKEAFRFFKLVPNP 90
           L R+ + S    LL+ +  ++ LLD+     + HA +    K +KAI    R  ++ P+P
Sbjct: 185 LGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHA-YSRTGKYEKAIDLFERMKEMGPSP 243

Query: 91  TLSTFNMLMSVCAS-SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
           TL T+N+++ V     +       VL  ++  GLK D    +T+++ CA+ G   +    
Sbjct: 244 TLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEF 303

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F  +K     P  V +NAL+   G++G    A  VL EM     P   D +T   L+ A 
Sbjct: 304 FAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPA--DSVTYNELVAAY 361

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AG    A  V +M+ K  +      YT  I+   + G  + A  ++  M + G +P+ 
Sbjct: 362 VRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNT 421

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              +A++   G   +     ++L + K+ G S    ++++++  C N    +    ++  
Sbjct: 422 CTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFRE 481

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MKS   +P   T N LI+A           ++  +M   G      TY+ LL A  RK D
Sbjct: 482 MKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGD 541

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
              G  ++S  K  G  P    +  ++
Sbjct: 542 WRSGENVISDMKSKGFKPTETSYSLML 568



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/446 (21%), Positives = 180/446 (40%), Gaps = 61/446 (13%)

Query: 26  SEQLHSYNRLI----RQGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           S  L +YN ++    + GR   + + +L++M  KGL   D+   +   + C  +  ++EA
Sbjct: 242 SPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGL-KFDEFTCSTVLSACAREGLLREA 300

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             FF  + +    P   T+N L+ V   +     A  VL+ ++E    AD   Y  L+  
Sbjct: 301 KEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAA 360

Query: 137 CAKSG-------KVDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             ++G        ++ M +  V P+ + +  +I A G++G  D A  +   M  E   V 
Sbjct: 361 YVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMK-EAGCV- 418

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE--VYTIAINCCSQTGDWEFA 245
           P+  T  A++      G+  R+ E+ KM+      G +P    +   +  C   G  +F 
Sbjct: 419 PNTCTYNAVLSLL---GKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFV 475

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             V+ +M   G  PD    + LI   G  G    A ++  E    G +  + +Y++L+ A
Sbjct: 476 NRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNA 535

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC----------------DGDQLPK 349
            +   +W+    +   MKS   KPT ++ + ++                    +G   P 
Sbjct: 536 LARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPS 595

Query: 350 TM-------------------EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
            M                      +  K  G  P+ + ++ +L    R +  +    +L 
Sbjct: 596 WMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILE 655

Query: 391 QAKEDGVIPNLVMFKCIIGMCSRRYE 416
             +EDG+ P+LV +  ++ M  RR E
Sbjct: 656 SIREDGLSPDLVTYNSLMDMYVRRGE 681



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 137/310 (44%), Gaps = 14/310 (4%)

Query: 126 DCKLYTTLITTCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRA-FDV 176
           D + YTT++   +++GK +    +FE +K     P  V +N ++   G+ G   R    V
Sbjct: 209 DVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGV 268

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
           L EM ++   +  D  T   ++ ACA  G +  A+E +  +     +     Y   +   
Sbjct: 269 LDEMRSK--GLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVF 326

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            + G +  A SV  +M +     D V  + L+     AG  + A  +++    +G+    
Sbjct: 327 GKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNA 386

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           I+Y++++ A   A    +AL+L+  MK     P   T NA+++ L    +  + +++L D
Sbjct: 387 ITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCD 446

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSR 413
           MKS G  PN  T++ +L  C  K   +    +  + K  G  P+   F  +I   G C  
Sbjct: 447 MKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGS 506

Query: 414 RYEKARTLNE 423
             + ++   E
Sbjct: 507 EVDASKMYGE 516



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 104/464 (22%), Positives = 183/464 (39%), Gaps = 80/464 (17%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R G   E   ++E M +KG++     Y        K+ K   EA + F  
Sbjct: 353 TYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKE-DEALKLFYS 411

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T+N ++S+      S    ++L  ++  G   +   + T++  C   G 
Sbjct: 412 MKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGM 471

Query: 143 ---VDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEM-----NAEVHPVDP 189
              V+ +F  +K     PDR  FN LI+A G+ G+   A  +  EM     NA V     
Sbjct: 472 DKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACV----- 526

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW------- 242
              T  AL+ A A  G       V   +     K T   Y++ + C ++ G++       
Sbjct: 527 --TTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIE 584

Query: 243 ---------------------EFACSV-------YDDMTKKGVIPDEVFLSALIDFAGHA 274
                                 F C         +    K G  PD V  ++++      
Sbjct: 585 NRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRN 644

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
              + A  IL+  +  G+S  +++Y+SLM          KA E+ + ++  +LKP + + 
Sbjct: 645 NMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSY 704

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-------VACERKDDVEVGLM 387
           N +I   C    + + + +LS+M   G+ P   TY+  +       +  E +D +E    
Sbjct: 705 NTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIEC--- 761

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFN 429
               AK D   PN + FK ++ G C + +Y +A      + +F+
Sbjct: 762 ---MAKND-CRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFD 801



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 129/298 (43%), Gaps = 9/298 (3%)

Query: 119 QEAGLKADCKLYTTLITTCAKS--GKVDAMFENVKPD--RVVFNALITACGQSGAVDRA- 173
           +   LK  CK    L+ +  +     +   F++VK +  R    +L+     SG  +RA 
Sbjct: 97  RNGSLKLLCKKEVVLVNSIVEQPLTGLSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAV 156

Query: 174 --FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
             F+ L  +++    +  DH  I   ++      Q   A ++   I           YT 
Sbjct: 157 FLFEWLV-LSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTT 215

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFEILQEAKNQ 290
            ++  S+TG +E A  +++ M + G  P  V  + ++D  G  G+       +L E +++
Sbjct: 216 ILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSK 275

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G+     + S+++ AC+     ++A E +  +KS   +P   T NAL+          + 
Sbjct: 276 GLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEA 335

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + VL +M+      +++TY+ L+ A  R    +    ++    + GV+PN + +  +I
Sbjct: 336 LSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVI 393



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/286 (18%), Positives = 113/286 (39%), Gaps = 16/286 (5%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDA 145
           N  ++T+N L++  A   D      V+  ++  G K     Y+ ++   AK G    ++ 
Sbjct: 523 NACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIER 582

Query: 146 MFENVK-----PDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
           +   +K     P  ++   L+ A   C      +RAF +  +     H   PD +   ++
Sbjct: 583 IENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKK-----HGYKPDMVIFNSM 637

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +         D+A  + + I +  +      Y   ++   + G+   A  +   + K  +
Sbjct: 638 LSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQL 697

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD V  + +I      G ++ A  +L E   +GI   I +Y++ +   +    + +  +
Sbjct: 698 KPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIED 757

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
           + E M     +P   T   ++   C   +  + M+ +S +K+   C
Sbjct: 758 VIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPC 803


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 108/486 (22%), Positives = 204/486 (41%), Gaps = 35/486 (7%)

Query: 71  CKSQKAIKEAF------RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           C     ++E F      R FK    P  S +  L+   +S ++S+    +   +QE G +
Sbjct: 173 CIKSNKLREGFDLIQCMRKFKF--RPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYE 230

Query: 125 ADCKLYTTLITTCAKSGKVDA---MFENVKP-----DRVVFNALITACGQSGAVDRAFDV 176
               L+TT+I   A+ G++DA   + + +K      D V++N  I   G++G VD A+  
Sbjct: 231 VSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKF 290

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
             E+ +  H + PD +T  +++       ++D A E+++ + +         Y   I   
Sbjct: 291 FHEIKS--HGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGY 348

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
              G ++ A S+ +    +G IP  +  + ++   G  G++  A    +E K    +  +
Sbjct: 349 GSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDA-APNL 407

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
            +Y+ L+     A   + A ++ + MK   L P V T+N +I  LC   +L +   +   
Sbjct: 408 STYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEG 467

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG---MCSR 413
           M      P+ +T+  L+    ++  V+    L  Q  +   IPN V++  +I     C R
Sbjct: 468 MNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGR 527

Query: 414 RYEKARTLNEHVLSFNSGRPQIENKW---------TSLALMVYREAIVAGTIPTVEVVSK 464
           + +  +   E +    S   ++ N +         T     ++ E    G IP V   S 
Sbjct: 528 KEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSI 587

Query: 465 VL-GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASF 521
           ++ G ++  +  +  E L   +      L      + IDGF +     +A+ LLEE  + 
Sbjct: 588 LIHGLVKAGFARETYE-LFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTK 646

Query: 522 GIVPCV 527
           G  P V
Sbjct: 647 GRQPTV 652



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/412 (22%), Positives = 190/412 (46%), Gaps = 27/412 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL------ 86
           +RL +  ++ E   + E M  K +   D+V      +    Q  + +A+R ++       
Sbjct: 450 DRLCKAKKLDEACSIFEGMNHK-ICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDK 508

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL---YTTLITTCAKSGKV 143
           +PN  + T +++ S     +  +G  ++ + +   G   D +L   Y   +    ++GK 
Sbjct: 509 IPNAVVYT-SLIKSFFKCGRKEDG-HKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKG 566

Query: 144 DAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            A+FE +K     PD + ++ LI    ++G     +++   M  +   +D         +
Sbjct: 567 RALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTH--AYNTFI 624

Query: 199 KACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
                +G+V++A   Y+++ +   KG   T   Y   I+  ++    + A  ++++    
Sbjct: 625 DGFCKSGKVNKA---YQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSN 681

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G+  + V  S+LID  G  G+++ A+ I++E   +G++  + +++ L+ A   A+   +A
Sbjct: 682 GLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEA 741

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           L  +++MK++K  P   T + LI  LC   +  K      +M+  GL PNTITY+ ++  
Sbjct: 742 LVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAG 801

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHV 425
             +  ++     L  + K +G +P+   +  II G+  SRR  +A  + E  
Sbjct: 802 LAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEET 853



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 113/511 (22%), Positives = 204/511 (39%), Gaps = 53/511 (10%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-----KSQKAIKEAFRFFKLVPN-- 89
           R+GR+   + LL++M +   L  D V     +NVC     K+ K +  A++FF  + +  
Sbjct: 245 REGRLDAALSLLDEM-KSNCLHADIV----LYNVCIDCFGKAGK-VDMAWKFFHEIKSHG 298

Query: 90  --PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--- 144
             P   T+  ++ V       + A ++   +++         Y T+I     +GK D   
Sbjct: 299 LLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAY 358

Query: 145 AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           ++ E  K     P  + +N ++T  G+ G +  A     EM  +  P   +  T   L+ 
Sbjct: 359 SLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAP---NLSTYNVLID 415

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               AG+V+ A +V   + +  +        I I+   +    + ACS+++ M  K   P
Sbjct: 416 MLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSP 475

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           DEV   +LID  G  G+V+ A+ + ++  +       + Y+SL+ +       +   +++
Sbjct: 476 DEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIF 535

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M      P +  +NA +  +    +  K   +  ++KS G  P+ ++YSIL+    + 
Sbjct: 536 KEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKA 595

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENK 438
                   L    KE G + +   +   I G C     K+  +N+               
Sbjct: 596 GFARETYELFYAMKEQGCVLDTHAYNTFIDGFC-----KSGKVNK--------------- 635

Query: 439 WTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLC 498
               A  +  E    G  PTV     V+  L      D    L E    +   L      
Sbjct: 636 ----AYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYS 691

Query: 499 SLIDGFGEYD--PRAFSLLEEAASFGIVPCV 527
           SLIDGFG+      A+ ++EE    G+ P V
Sbjct: 692 SLIDGFGKVGRIDEAYLIMEELMQKGLTPNV 722



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 91/421 (21%), Positives = 165/421 (39%), Gaps = 37/421 (8%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAMFENV---- 150
           ++++ V   +KD   A    R  +    +A C + Y +L+   AK+ K D  FE +    
Sbjct: 96  DLVIGVLRRAKDVNQAISYFRWTERKTDQALCPEAYDSLLLVMAKNVKFD-YFEQILGEM 154

Query: 151 -----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                 P       LI +C +S  +   FD++  M        P       L+ A ++  
Sbjct: 155 SIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRK--FKFRPAFSAYTTLIGALSSVQ 212

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           + D    ++  + +   + +  ++T  I   ++ G  + A S+ D+M    +  D V  +
Sbjct: 213 ESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYN 272

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
             ID  G AGKV+ A++   E K+ G+    ++Y+S++G         +A+E++E M+  
Sbjct: 273 VCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQN 332

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           +  P     N +I       +  +   +L   K+ G  P+ I Y+ +L    +K  +   
Sbjct: 333 RNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEA 392

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM 445
           L    + K+D   PNL  +  +I M  +  E                          A  
Sbjct: 393 LRTFEEMKKDAA-PNLSTYNVLIDMLCKAGE-----------------------VEAAFK 428

Query: 446 VYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFG 505
           V      AG  P V  V+ ++  L      D    + E +     +      CSLIDG G
Sbjct: 429 VRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLG 488

Query: 506 E 506
           +
Sbjct: 489 K 489



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 159/370 (42%), Gaps = 26/370 (7%)

Query: 70  VCKSQKAIKEAFRFFKLVPNPT-----LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           V +  K + +A  +F+     T        ++ L+ V A +   +   Q+L  +  AG  
Sbjct: 101 VLRRAKDVNQAISYFRWTERKTDQALCPEAYDSLLLVMAKNVKFDYFEQILGEMSIAGFG 160

Query: 125 ADCKLYTTLITTCAKSGKVDAMFENVK-----PDRVVFNALITACGQSGAVDRA------ 173
              K    LI +C KS K+   F+ ++       R  F+A  T  G   +V  +      
Sbjct: 161 PSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTL 220

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
           F  + E+  EV      H+    +++  A  G++D A  +   +    +     +Y + I
Sbjct: 221 FHQMQELGYEVSV----HL-FTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCI 275

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           +C  + G  + A   + ++   G++PD+V  +++I       +++ A EI ++ +     
Sbjct: 276 DCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNV 335

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
               +Y++++    +A  + +A  L E  K+    P+V   N ++T L    +L + +  
Sbjct: 336 PCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRT 395

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             +MK     PN  TY++L+    +  +VE    +    KE G+ PN++    +I     
Sbjct: 396 FEEMKK-DAAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMID---- 450

Query: 414 RYEKARTLNE 423
           R  KA+ L+E
Sbjct: 451 RLCKAKKLDE 460



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 143/319 (44%), Gaps = 20/319 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P + ++++L+     +  +   +++   ++E G   D   Y T I    KSGKV+  ++ 
Sbjct: 580 PDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQL 639

Query: 150 V--------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +        +P  V + ++I    +   +D A+ +  E  A+ + ++ + +   +L+   
Sbjct: 640 LEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEE--AKSNGLELNVVIYSSLIDGF 697

Query: 202 ANAGQVDRAREVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVI 258
              G++D   E Y ++ +   KG TP VYT    ++   +  +   A   + +M      
Sbjct: 698 GKVGRID---EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGT 754

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+ +  S LI+      K   AF   QE + QG+    I+Y++++   + A N  +A  L
Sbjct: 755 PNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSL 814

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           +E  K+    P  ++ NA+I  L    +  +  ++  + +  G   +T T   LL A ++
Sbjct: 815 FERFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTCIALLDALQK 874

Query: 379 KDDVE----VGLMLLSQAK 393
            + +E    VG +L   AK
Sbjct: 875 DECLEQAAIVGAVLREIAK 893


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 169/358 (47%), Gaps = 23/358 (6%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAM 146
           + M++ + A     + A  +   +QE   K D  +Y +LI   +++G+         D +
Sbjct: 14  YGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDML 73

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              + P R  +N +I ACG +G   +A ++  +M    + V PD +T   ++ A  N  Q
Sbjct: 74  RAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTE--NGVGPDLVTHNIVLSALKNGAQ 131

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVFL 264
             +A   ++++   N+        I I+C  + G    A  +++ M ++     PD V  
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTY 191

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++++      G+VE    I      +G+   I++Y+SL+GA ++    ++AL ++  +K 
Sbjct: 192 TSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKK 251

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             L+P + +  +L+ A     Q  K  EV + MK     PN ++Y+ L+ A      ++ 
Sbjct: 252 NGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKE 311

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----RYE------KARTLNEHVLSFNSG 431
            + LL + ++DG+ P++V    ++  C R     R E      ++R ++ + +++NSG
Sbjct: 312 AVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSG 369



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 153/332 (46%), Gaps = 8/332 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC---AKSGKVDAM 146
           PT +T+N +++ C ++ + + A ++ + + E G+  D   +  +++     A+  K  + 
Sbjct: 79  PTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISY 138

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE     NV  D    N +I    + G    A ++   M        PD +T  ++M + 
Sbjct: 139 FEIMKGANVTSDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSY 198

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              GQV+  + ++ ++    +K     Y   +   +  G    A ++++ + K G+ PD 
Sbjct: 199 CIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDI 258

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  ++L++  G + + E A E+  + K        +SY++L+ A  +A   ++A+ L   
Sbjct: 259 VSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHE 318

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+   ++P V +++ L+ A     Q+ +   +L   +S G+  NT+ Y+  + +     D
Sbjct: 319 MEKDGIQPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGD 378

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            E  L L +  +E  V P+ V +  +I   S+
Sbjct: 379 YEKALELYTSMRESNVKPDAVTYNILISGSSK 410



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 86/416 (20%), Positives = 162/416 (38%), Gaps = 68/416 (16%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN LI      G + E + LL +ME+ G+                              
Sbjct: 295 SYNALIDAYGSAGMLKEAVGLLHEMEKDGI------------------------------ 324

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              P + + + L++ C   +       +L   +  G+  +   Y + I +    G  +  
Sbjct: 325 --QPDVVSISTLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKA 382

Query: 147 FE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            E        NVKPD V +N LI+   + G    +     +M      VD          
Sbjct: 383 LELYTSMRESNVKPDAVTYNILISGSSKLGKYTESLRFFEDM------VDSK-------- 428

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
            +    G++  A   +  + K         YT  I   +  G W+ A  ++ +M   G+ 
Sbjct: 429 VSSTKEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIP 488

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD +  S+L++     G+ E   ++++  K + I +   SY  ++ +C+  ++W+ A E+
Sbjct: 489 PDAIICSSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEM 548

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM----KSLGLCPNTITYSILLV 374
            E++ S     +V T+N ++  L    +    M++   M     ++GL    +    LLV
Sbjct: 549 IEYLDSSLSSISVGTLNHVLNFLGKCGKTENMMKLFYKMVTSCSTVGLSTYAVVLRNLLV 608

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSF 428
             + +  +EV    L   ++ GV P L MF+ ++    R    + A T+ E + S 
Sbjct: 609 VGKWRKYIEV----LQWMEDSGVHPTLYMFQNVLPYIWRENGMDFAATMQEKISSL 660



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 129/275 (46%), Gaps = 20/275 (7%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           ++  +I    +   VD+A  +  EM  +     PD     +L+ A + AGQ   A  + +
Sbjct: 13  IYGMMIRLYARHNQVDQARGLFFEM--QEWRCKPDADIYNSLIHAHSRAGQWRWAINIME 70

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFA 271
            + +  I  T   Y   IN C   G+W+ A  +   MT+ GV PD     + LSAL + A
Sbjct: 71  DMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGA 130

Query: 272 GHAGKVEAAFEILQEAK--NQGISVGIISYSSL-MGACSNAKNWQKALELYEHMKSIKLK 328
            ++ K  + FEI++ A   +   ++ II +  + +G C       +A+EL+  M+  + K
Sbjct: 131 QYS-KAISYFEIMKGANVTSDTFTLNIIIHCLVKIGQCG------EAIELFNSMRERRTK 183

Query: 329 --PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
             P V T  +++ + C   Q+     +   M + G+ PN + Y+ LL A   +      L
Sbjct: 184 CPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREAL 243

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKAR 419
            + +  K++G+ P++V +  ++    R  + EKAR
Sbjct: 244 AIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAR 278



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 73/147 (49%)

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           ++Y + I   ++    + A  ++ +M +    PD    ++LI     AG+   A  I+++
Sbjct: 12  DIYGMMIRLYARHNQVDQARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMED 71

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
                I     +Y++++ AC  A NW+KALEL + M    + P + T N +++AL +G Q
Sbjct: 72  MLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQ 131

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILL 373
             K +     MK   +  +T T +I++
Sbjct: 132 YSKAISYFEIMKGANVTSDTFTLNIII 158


>gi|145356823|ref|XP_001422624.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582867|gb|ABP00941.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 744

 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 109/216 (50%), Gaps = 3/216 (1%)

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-KGVIPDEVFLSALI 268
           A  V +++ +   K     YT  I  C +   WE A   Y+ MTK  G  P+ +  SALI
Sbjct: 62  AAAVERVLRQSVFKPGAPAYTTVIKACGKASQWEKALKAYEMMTKLHGAKPNTITFSALI 121

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +  G A + + AF+I  E  ++GI   I +YS+L+GAC+ AK +Q+A+++++ +      
Sbjct: 122 NALGKAKQCDRAFQIFDEMNDRGIEPNIFTYSALLGACARAKQYQRAMDIFQDLIENHRD 181

Query: 329 PTVS--TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
             V   T  A I     G +  K +E+   M + G+  N ITY+ +L+ACE+  D +   
Sbjct: 182 VEVDRITYGAAIQCCVQGRRADKAIEIFERMLASGIKGNIITYNAVLMACEKSGDSDGAQ 241

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
            +  +   + V  +   F  +IG C R  + ++ ++
Sbjct: 242 EMFERMSAEQVPMDRATFHAMIGACDRARQLSKVMD 277



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 146/333 (43%), Gaps = 51/333 (15%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------- 148
           L  + A  +D+E A  V R+++++  K     YTT+I  C K+ + +   +         
Sbjct: 49  LEDLIARVEDAEDAAAVERVLRQSVFKPGAPAYTTVIKACGKASQWEKALKAYEMMTKLH 108

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
             KP+ + F+ALI A G++   DRAF +  EMN     ++P+  T  AL+ ACA A Q  
Sbjct: 109 GAKPNTITFSALINALGKAKQCDRAFQIFDEMND--RGIEPNIFTYSALLGACARAKQYQ 166

Query: 209 RAREVYKMI--HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           RA ++++ +  +  +++     Y  AI CC Q                            
Sbjct: 167 RAMDIFQDLIENHRDVEVDRITYGAAIQCCVQ---------------------------- 198

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
                    + + A EI +     GI   II+Y++++ AC  + +   A E++E M + +
Sbjct: 199 -------GRRADKAIEIFERMLASGIKGNIITYNAVLMACEKSGDSDGAQEMFERMSAEQ 251

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           +    +T +A+I A     QL K M+    M   G+ P+  T S +L+AC    D    +
Sbjct: 252 VPMDRATFHAMIGACDRARQLSKVMDYYHMMPERGVTPDAGTVSNVLMACSNAKDPLTAI 311

Query: 387 MLLSQAKED-GVIPNLVMFKCIIGMCSR--RYE 416
            +   A+    V     MF  +IG   R  RY+
Sbjct: 312 KVYHDARAKFDVHRTPGMFNNLIGALHRGKRYD 344



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 5/138 (3%)

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTVSTMNALITALCDGDQLPKTMEV 353
           G  +Y++++ AC  A  W+KAL+ YE M  +   KP   T +ALI AL    Q  +  ++
Sbjct: 77  GAPAYTTVIKACGKASQWEKALKAYEMMTKLHGAKPNTITFSALINALGKAKQCDRAFQI 136

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED--GVIPNLVMFKCIIGMC 411
             +M   G+ PN  TYS LL AC R    +  + +     E+   V  + + +   I  C
Sbjct: 137 FDEMNDRGIEPNIFTYSALLGACARAKQYQRAMDIFQDLIENHRDVEVDRITYGAAIQCC 196

Query: 412 --SRRYEKARTLNEHVLS 427
              RR +KA  + E +L+
Sbjct: 197 VQGRRADKAIEIFERMLA 214



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 62/309 (20%), Positives = 117/309 (37%), Gaps = 74/309 (23%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVC----KSQK 75
           +   + +Y+ L+    R  +    +D+ +D+ E    +++D++ +      C    ++ K
Sbjct: 145 IEPNIFTYSALLGACARAKQYQRAMDIFQDLIENHRDVEVDRITYGAAIQCCVQGRRADK 204

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           AI+   R         + T+N ++  C  S DS+GA ++   +                 
Sbjct: 205 AIEIFERMLASGIKGNIITYNAVLMACEKSGDSDGAQEMFERMSA--------------- 249

Query: 136 TCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                       E V  DR  F+A+I AC ++  + +  D    M      V PD  T+ 
Sbjct: 250 ------------EQVPMDRATFHAMIGACDRARQLSKVMDYYHMMPE--RGVTPDAGTVS 295

Query: 196 ALMKACANAGQVDRAREVYKMIH-KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            ++ AC+NA     A +VY     K+++  TP ++   I    +   +        D+  
Sbjct: 296 NVLMACSNAKDPLTAIKVYHDARAKFDVHRTPGMFNNLIGALHRGKRY--------DLVY 347

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           + +  D +  SAL                            + +Y  LM AC    NW+K
Sbjct: 348 EQLFHDSMTQSAL---------------------------SVSTYVHLMMACERFGNWEK 380

Query: 315 ALELYEHMK 323
           + +L+E  K
Sbjct: 381 SFQLFEEFK 389


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 172/414 (41%), Gaps = 20/414 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN-- 89
           N L++ G + +   L ++    G   +D   +    +     K I+EA     K+  N  
Sbjct: 7   NGLVKAGMLIQAHSLAQETTTNGC-TIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGC 65

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            PT++T+N L++        E A  +LR + + G   D   YT+LI    K  +    ++
Sbjct: 66  TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYK 125

Query: 149 NVKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             K         D V + ALI    Q+G + +A  V   M ++     PD +T+  ++  
Sbjct: 126 LFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQ--GCVPDVVTLSTMIDG 183

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              AG++  A  ++K +    +     VY+  I+   +    + A  +   M K    PD
Sbjct: 184 LCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 243

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  + LID    +G V AA     E    G    + +Y+ L+     A N   A  +++
Sbjct: 244 TITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFD 303

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M S +  P V T   LI+ LC   QL K       MK  G  P++  YS L+    +  
Sbjct: 304 DMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSG 363

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 434
            +E G ML  + +  GV  +    + I  +C     KA  ++E V  FN+ R +
Sbjct: 364 KLEGGCMLFDEMERSGVANSQTRTRLIFHLC-----KANRVDEAVSLFNAIRKE 412



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 70/145 (48%)

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            S LI+    AG +  A  + QE    G ++ I +Y++++   +  K  Q+A+ L E + 
Sbjct: 2   FSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKIT 61

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           +    PT++T NAL+  LC   +L + +++L  +   G  P+ +TY+ L+    +K    
Sbjct: 62  ANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSF 121

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
               L  +    G+  + V +  +I
Sbjct: 122 EAYKLFKEMASRGLALDTVCYTALI 146


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 162/370 (43%), Gaps = 14/370 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L + G   E   LL  M  K        Y      +CK  + ++EA    + +     P 
Sbjct: 55  LCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNR-VEEARELIEKMARYAPPD 113

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFE 148
             T+  ++     +K  + A   +  +   G+K D  +Y  +++   +  KV+    +FE
Sbjct: 114 ALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFE 173

Query: 149 N-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 + P+ V +N LI    ++  ++ A+++  EM  + +   P  ++   L+     
Sbjct: 174 KMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYV--PTEVSYNTLIDGFCK 231

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
              +  A++V+  + + N       YT  I+  S++G  + A  V D M KKGV P+   
Sbjct: 232 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 291

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            S LID      +V+ A ++L++   QGI+  +++Y+ L+ +   A   + A +L+  M 
Sbjct: 292 YSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMA 351

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
             +  PTV T N L+ ALC   QL     + ++M + G  P+ ITY  L     R   V 
Sbjct: 352 QRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVH 411

Query: 384 VGLMLLSQAK 393
               L+ + K
Sbjct: 412 EAQELMEKMK 421



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 119/255 (46%), Gaps = 2/255 (0%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           +KPD  ++N +++   Q   V+ A  +  +M  +   ++P+ +T   L+     A +++ 
Sbjct: 145 IKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQ--RINPNVVTYNTLINGLCKAWRIET 202

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A E++K +       T   Y   I+   +  D   A  V+D M +   +P+ V  + LID
Sbjct: 203 AYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLID 262

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
               +GKV+AA E+L     +G++  + +YS L+      +   +A +L E M +  + P
Sbjct: 263 GLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAP 322

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
           TV T N L+ +LC  D+L    ++   M      P  +TY+ LL A      ++    L 
Sbjct: 323 TVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLY 382

Query: 390 SQAKEDGVIPNLVMF 404
           ++    G  P+ + +
Sbjct: 383 AEMIAKGCPPDAITY 397



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 70/330 (21%), Positives = 143/330 (43%), Gaps = 10/330 (3%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK- 151
           S + +L+S      + + A+++L  ++    K     Y+T+I    K  +V+   E ++ 
Sbjct: 46  SGYGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEK 105

Query: 152 ------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                 PD + +  ++    ++  +D A   + EM      + PD      ++       
Sbjct: 106 MARYAPPDALTYGPIVERLCKTKRIDDALATVEEM--ATRGIKPDAFIYNFVLSGLCQEE 163

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +V+ AR +++ + K  I      Y   IN   +    E A  ++ +M  KG +P EV  +
Sbjct: 164 KVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYN 223

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LID       + AA ++  +         +++Y++L+   S +   Q A E+ + M   
Sbjct: 224 TLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKK 283

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + P V+T + LI   C   ++ +  ++L  M + G+ P  +TY+ILL +  R D +E  
Sbjct: 284 GVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDA 343

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
             L     +    P +V +  ++  +C  +
Sbjct: 344 FKLFRGMAQRRCHPTVVTYNTLLRALCHHK 373



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 161/388 (41%), Gaps = 23/388 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P  +TFN +    A +   E   +V + + EAG       Y  LI+   K G  D  ++ 
Sbjct: 8   PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                    K   + ++ +I    +   V+ A +++ +M A   P  PD +T G +++  
Sbjct: 68  LHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM-ARYAP--PDALTYGPIVERL 124

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               ++D A    + +    IK    +Y   ++   Q    E A  +++ M K+ + P+ 
Sbjct: 125 CKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNV 184

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LI+    A ++E A+E+ +E   +G     +SY++L+      K+   A ++++ 
Sbjct: 185 VTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDK 244

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M      P V T   LI  L    ++    EVL  M   G+ PN  TYS L+    +   
Sbjct: 245 MVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRR 304

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----------RYEKARTLNEHVLSFNS 430
           V+    LL Q    G+ P +V +  ++    R           R    R  +  V+++N+
Sbjct: 305 VDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNT 364

Query: 431 -GRPQIENKWTSLALMVYREAIVAGTIP 457
             R    +K    A  +Y E I  G  P
Sbjct: 365 LLRALCHHKQLDGAHRLYAEMIAKGCPP 392



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 131/307 (42%), Gaps = 13/307 (4%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NP 90
           RL +  RI + +  +E+M  +G+     +Y+     +C+ +K  +    F K+V    NP
Sbjct: 123 RLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINP 182

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSGKVDA--MF 147
            + T+N L++    +   E A+++ + +   G       Y TLI   C K   V A  +F
Sbjct: 183 NVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVF 242

Query: 148 E-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +     N  P+ V +  LI    +SG V  A +VL  M  +   V P+  T   L+    
Sbjct: 243 DKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKK--GVTPNVATYSCLIDGFC 300

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              +VD A ++ + +    I  T   Y I +N   +    E A  ++  M ++   P  V
Sbjct: 301 KVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVV 360

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L+    H  +++ A  +  E   +G     I+Y +L    + A    +A EL E M
Sbjct: 361 TYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 420

Query: 323 KSIKLKP 329
           K  K  P
Sbjct: 421 KLTKRNP 427



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/229 (20%), Positives = 98/229 (42%), Gaps = 2/229 (0%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           V P   T   +    A AG++++ +EVY+ + +         Y I I+C  + G+++ A 
Sbjct: 6   VIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAY 65

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +   M  K      +  S +I++     +VE A E++++          ++Y  ++   
Sbjct: 66  KLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYA-PPDALTYGPIVERL 124

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
              K    AL   E M +  +KP     N +++ LC  +++ +   +   M    + PN 
Sbjct: 125 CKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNV 184

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
           +TY+ L+    +   +E    L  +    G +P  V +  +I G C ++
Sbjct: 185 VTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKK 233



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 103/270 (38%), Gaps = 46/270 (17%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    +  RI    +L ++M  KG +                             
Sbjct: 186 TYNTLINGLCKAWRIETAYELFKEMAGKGYV----------------------------- 216

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              PT  ++N L+      KD   A  V   +  +    +   YTTLI   +KSGKV A 
Sbjct: 217 ---PTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAA 273

Query: 147 FE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            E         V P+   ++ LI    +   VD A  +L +M  +   + P  +T   L+
Sbjct: 274 AEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQ--GIAPTVVTYNILL 331

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
            +   A +++ A ++++ + +     T   Y   +         + A  +Y +M  KG  
Sbjct: 332 NSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCP 391

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           PD +    L      AGKV  A E++++ K
Sbjct: 392 PDAITYDTLAWGLTRAGKVHEAQELMEKMK 421



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 94/219 (42%), Gaps = 13/219 (5%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M  + VIP     + + D    AG++E   E+ Q     G ++    Y  L+       N
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           + +A +L   M+  + K      + +I  LC  +++ +  E++  M      P+ +TY  
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAP-PDALTYGP 119

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL-------- 421
           ++    +   ++  L  + +    G+ P+  ++  ++ G+C   + E+AR L        
Sbjct: 120 IVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQR 179

Query: 422 -NEHVLSFNSGRPQIENKW-TSLALMVYREAIVAGTIPT 458
            N +V+++N+    +   W    A  +++E    G +PT
Sbjct: 180 INPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPT 218


>gi|299471432|emb|CBN79384.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 962

 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 140/308 (45%), Gaps = 17/308 (5%)

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MFEN-- 149
           M+ C   +++E    V+  ++   +  D   Y + I   A+ G +DA       M E   
Sbjct: 67  MARCGRPREAEALLTVM--LERDSIAPDTISYNSAINGHARCGDLDAARRLLGRMTELAS 124

Query: 150 ----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               + PD+  +NA+  A  + G    A +VL +M AE   V P+ IT  + + AC   G
Sbjct: 125 GGALLHPDQFTYNAVANAAAKRGDAVAAAEVL-KMMAEAG-VTPNIITYNSCLAACKAKG 182

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            + RA  + +++ +  I      Y+ AI      G WE      + M ++ + PD V  +
Sbjct: 183 DLRRAVVLLEIMREDGIDPDQRSYSAAIATAGIRGLWEEVQGFLETMREEDLTPDTVTFN 242

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
             I      G+ + AF +L E KN+G++   ISY+ ++GAC NA  W+ AL L E M+  
Sbjct: 243 TAIKAVADNGQCDVAFSLLAEMKNEGLTPDQISYNGVLGACGNAGEWKAALRLLEDMRQA 302

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + P     +A + A     +  + + +L  M+  G+  +T  Y+  + AC    D    
Sbjct: 303 GVTPNAYNYSAAMDACGKAGRQREALALLGHMRKAGVRADTACYNAAIDACSVAMDWTAA 362

Query: 386 LMLLSQAK 393
           + LL + K
Sbjct: 363 VQLLQEMK 370



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 158/376 (42%), Gaps = 61/376 (16%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------ 142
           +P   T+N + +  A   D+  A +VL+++ EAG+  +   Y + +  C   G       
Sbjct: 130 HPDQFTYNAVANAAAKRGDAVAAAEVLKMMAEAGVTPNIITYNSCLAACKAKGDLRRAVV 189

Query: 143 -VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            ++ M E+ + PD+  ++A I   G  G  +     L  M  E   + PD +T    +KA
Sbjct: 190 LLEIMREDGIDPDQRSYSAAIATAGIRGLWEEVQGFLETMREE--DLTPDTVTFNTAIKA 247

Query: 201 CANAGQVDRAREVYKMIHKYNIKG-TPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            A+ GQ D A   + ++ +   +G TP+   Y   +  C   G+W+ A  + +DM + GV
Sbjct: 248 VADNGQCDVA---FSLLAEMKNEGLTPDQISYNGVLGACGNAGEWKAALRLLEDMRQAGV 304

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P+    SA +D  G AG+   A  +L   +  G+      Y++ + ACS A +W  A++
Sbjct: 305 TPNAYNYSAAMDACGKAGRQREALALLGHMRKAGVRADTACYNAAIDACSVAMDWTAAVQ 364

Query: 318 LYEHMK--------------------SIKLKPTVSTMNALITALCDGDQLPKTM------ 351
           L + MK                     +   P V +  + ITA     ++ + +      
Sbjct: 365 LLQEMKLGVAGAASGGAPGGGGTAGVEVAPPPDVVSYASAITACARARRVDEALGLLSEL 424

Query: 352 -------------------EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
                              E+L +M + GL PN I    ++ A   +   E  + L+ + 
Sbjct: 425 RVNEAQAAAAAAGDVACGAELLDEMIAAGLRPNKIHCDTMVAAWSAEGKPERAVALMRRL 484

Query: 393 KEDGVIPNLVMFKCII 408
           +  G  P+L  ++ I+
Sbjct: 485 QSHGFEPSLYTYETIV 500



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 136/317 (42%), Gaps = 19/317 (5%)

Query: 113 QVLRLVQE---AGLKADCKLYTTLITTCAKSGK-------VDAMFE--NVKPDRVVFNAL 160
           +V  LV E    G++ +  +Y T I   A+ G+       +  M E  ++ PD + +N+ 
Sbjct: 40  EVAALVSEMGGKGVEGNVYIYNTAIAAMARCGRPREAEALLTVMLERDSIAPDTISYNSA 99

Query: 161 ITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 217
           I     CG   A  R    + E+ +    + PD  T  A+  A A  G    A EV KM+
Sbjct: 100 INGHARCGDLDAARRLLGRMTELASGGALLHPDQFTYNAVANAAAKRGDAVAAAEVLKMM 159

Query: 218 HKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            +  +  TP +  Y   +  C   GD   A  + + M + G+ PD+   SA I  AG  G
Sbjct: 160 AEAGV--TPNIITYNSCLAACKAKGDLRRAVVLLEIMREDGIDPDQRSYSAAIATAGIRG 217

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
             E     L+  + + ++   +++++ + A ++      A  L   MK+  L P   + N
Sbjct: 218 LWEEVQGFLETMREEDLTPDTVTFNTAIKAVADNGQCDVAFSLLAEMKNEGLTPDQISYN 277

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            ++ A  +  +    + +L DM+  G+ PN   YS  + AC +       L LL   ++ 
Sbjct: 278 GVLGACGNAGEWKAALRLLEDMRQAGVTPNAYNYSAAMDACGKAGRQREALALLGHMRKA 337

Query: 396 GVIPNLVMFKCIIGMCS 412
           GV  +   +   I  CS
Sbjct: 338 GVRADTACYNAAIDACS 354



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/331 (19%), Positives = 139/331 (41%), Gaps = 42/331 (12%)

Query: 80  AFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           AF     + N  L+    ++N ++  C ++ + + A ++L  +++AG+  +   Y+  + 
Sbjct: 257 AFSLLAEMKNEGLTPDQISYNGVLGACGNAGEWKAALRLLEDMRQAGVTPNAYNYSAAMD 316

Query: 136 TCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN------ 181
            C K+G+               V+ D   +NA I AC  +     A  +L EM       
Sbjct: 317 ACGKAGRQREALALLGHMRKAGVRADTACYNAAIDACSVAMDWTAAVQLLQEMKLGVAGA 376

Query: 182 -------------AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                         EV P  PD ++  + + ACA A +VD   E   ++ +  +      
Sbjct: 377 ASGGAPGGGGTAGVEVAP-PPDVVSYASAITACARARRVD---EALGLLSELRVNEAQAA 432

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
              A +             + D+M   G+ P+++    ++      GK E A  +++  +
Sbjct: 433 AAAAGDVACGA-------ELLDEMIAAGLRPNKIHCDTMVAAWSAEGKPERAVALMRRLQ 485

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
           + G    + +Y +++   +   NW  A+    ++  + L+P+V + +A I A        
Sbjct: 486 SHGFEPSLYTYETIVWGFAKEANWAAAVRFLAYVLGLGLQPSVRSWDAAIAACSQAGHWE 545

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + + +L+DM+  G+ P+ +TY+  +V   R+
Sbjct: 546 RALALLADMRKQGIRPSKVTYTAAVVGINRR 576



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/338 (18%), Positives = 124/338 (36%), Gaps = 60/338 (17%)

Query: 23  HDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
            D++    ++N  I+     G+      LL +M+ +GL   D++ +      C +    K
Sbjct: 232 EDLTPDTVTFNTAIKAVADNGQCDVAFSLLAEMKNEGLTP-DQISYNGVLGACGNAGEWK 290

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
            A R  + +      P    ++  M  C  +     A  +L  +++AG++AD   Y   I
Sbjct: 291 AALRLLEDMRQAGVTPNAYNYSAAMDACGKAGRQREALALLGHMRKAGVRADTACYNAAI 350

Query: 135 TTCAKSGKVDA---MFENVK-------------------------PDRVVFNALITACGQ 166
             C+ +    A   + + +K                         PD V + + ITAC +
Sbjct: 351 DACSVAMDWTAAVQLLQEMKLGVAGAASGGAPGGGGTAGVEVAPPPDVVSYASAITACAR 410

Query: 167 SGAVDRAFDVLAEMNAE-----------------------VHPVDPDHITIGALMKACAN 203
           +  VD A  +L+E+                             + P+ I    ++ A + 
Sbjct: 411 ARRVDEALGLLSELRVNEAQAAAAAAGDVACGAELLDEMIAAGLRPNKIHCDTMVAAWSA 470

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G+ +RA  + + +  +  + +   Y   +   ++  +W  A      +   G+ P    
Sbjct: 471 EGKPERAVALMRRLQSHGFEPSLYTYETIVWGFAKEANWAAAVRFLAYVLGLGLQPSVRS 530

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
             A I     AG  E A  +L + + QGI    ++Y++
Sbjct: 531 WDAAIAACSQAGHWERALALLADMRKQGIRPSKVTYTA 568


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 179/364 (49%), Gaps = 33/364 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
           P   T+  +++      D+  A  +LR + E+ +KA+  +Y+ ++    K G   K   +
Sbjct: 43  PDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNI 102

Query: 147 F-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F     + + P+ + +N +I      G    A  +L +M      +DPD +T  AL+ A 
Sbjct: 103 FTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIE--RNIDPDVVTFSALINAF 160

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+V  A E+Y+ + + NI  T   Y+  I+   +    E A  ++D M  KG  PD 
Sbjct: 161 VKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDI 220

Query: 262 VFLSALIDFAGHA-----------GKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNA 309
           + L+ LID    A           G V  A ++ QE  + G+S  I++ ++L+ G C N 
Sbjct: 221 ITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENG 280

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
           K  +KALE+++  +  K+    +T N +I  +C G+++ +  ++ + +   G+  + +TY
Sbjct: 281 K-LEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTY 339

Query: 370 SILLVACERKDDV----EVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNE 423
           +IL+    ++ +     ++ L +L +    G+IP+ V +  ++ G C + R E+AR + +
Sbjct: 340 NILIGVFVKEGNFLRAEDIYLEMLCK----GIIPSTVTYNSMVDGFCKQNRLEEARQMVD 395

Query: 424 HVLS 427
            ++S
Sbjct: 396 SMVS 399



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/366 (21%), Positives = 159/366 (43%), Gaps = 23/366 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N  +++G++S   +L  +M R+ +      Y +     CK  + +++A   F L+ +   
Sbjct: 158 NAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSR-LEDAKHMFDLMVSKGC 216

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T N L+  C  +K       +    Q   +     L+  +I+             
Sbjct: 217 SPDIITLNTLIDGCCRAK----RHLIHGFCQVGNVNVAQDLFQEMISN------------ 260

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            V PD V  N L+    ++G +++A ++          +D D  T   ++       +VD
Sbjct: 261 GVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKS--KMDLDTATCNIIINGMCKGNKVD 318

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A +++  +    ++     Y I I    + G++  A  +Y +M  KG+IP  V  ++++
Sbjct: 319 EAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMV 378

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           D      ++E A +++    ++G S  ++++S+L+     A      LEL+  M    L 
Sbjct: 379 DGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLV 438

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
               T NALI   C    L    ++  +M S G+CP+TIT+  +L     K +++ GL +
Sbjct: 439 ADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTM 498

Query: 389 LSQAKE 394
           L   ++
Sbjct: 499 LEDLQK 504



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/417 (21%), Positives = 175/417 (41%), Gaps = 26/417 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           +RL + G   +  ++  +M  KG+      Y+      C   K          ++    +
Sbjct: 88  DRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNID 147

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P + TF+ L++         GA ++ R +    +      Y+++I    K  +++    M
Sbjct: 148 PDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHM 207

Query: 147 FE-----NVKPDRVVFNALITACG-----------QSGAVDRAFDVLAEMNAEVHPVDPD 190
           F+        PD +  N LI  C            Q G V+ A D+  EM +  + V PD
Sbjct: 208 FDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMIS--NGVSPD 265

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +T   L+      G++++A E++K+  K  +        I IN   +    + A  +++
Sbjct: 266 IVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFN 325

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            +   GV  D V  + LI      G    A +I  E   +GI    ++Y+S++       
Sbjct: 326 SLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQN 385

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             ++A ++ + M S    P V T + LI   C   ++   +E+ S+M   GL  +TITY+
Sbjct: 386 RLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYN 445

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
            L+    +  D+     +  +    GV P+ + F+ ++ G+C++   +K  T+ E +
Sbjct: 446 ALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDL 502



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 127/287 (44%), Gaps = 16/287 (5%)

Query: 146 MFENVKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           M E   P  VV F  L+    + G V +A  ++  M  E H   PD +T G ++      
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQ--PDAVTYGTIVNGMCKL 58

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G    A  + + + +  IK    +Y+  ++   + G+   A +++ +M +KG+ P+ +  
Sbjct: 59  GDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTY 118

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + +ID     GK   A ++L++   + I   ++++S+L+ A         A ELY  M  
Sbjct: 119 NCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLR 178

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD---- 380
             + PT  T +++I   C   +L     +   M S G  P+ IT + L+  C R      
Sbjct: 179 RNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLI 238

Query: 381 -------DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 418
                  +V V   L  +   +GV P++V    ++ G+C   + EKA
Sbjct: 239 HGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKA 285


>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
 gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 102/404 (25%), Positives = 186/404 (46%), Gaps = 66/404 (16%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +++    +GR+S+  +LL DM++ GL+     Y+   +  CK   ++KEAF+  +L
Sbjct: 242 TYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCK-LGSLKEAFQIVEL 300

Query: 87  VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +      P L T+N+L++ +C +    EG  +++  ++   L+ D   Y TLI  C + G
Sbjct: 301 MKQTNVLPDLCTYNILINGLCNAGSMREG-LELMDAMKSLKLQPDVVTYNTLIDGCFELG 359

Query: 142 ------KVDAMFEN--VKPDRVVFN-ALITACGQSG--AVDRAFDVLAEMNAEVHPVDPD 190
                 K+    EN  VK ++V  N +L   C +    AV R    L +M    H   PD
Sbjct: 360 LSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDM----HGFSPD 415

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +T   L+KA    G +  A E+ +                                   
Sbjct: 416 IVTYHTLIKAYLKVGDLSGALEMMR----------------------------------- 440

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M +KG+  + + L+ ++D      K++ A  +L  A  +G  V  ++Y +L+      +
Sbjct: 441 EMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREE 500

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             +KALE+++ MK +K+ PTVST N+LI  LC   +    ME   ++   GL P+  T++
Sbjct: 501 KVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFN 560

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMC 411
            +++   ++  VE      +++ +    P+   + C I   G+C
Sbjct: 561 SIILGYCKEGRVEKAFEFYNESIKHSFKPD--NYTCNILLNGLC 602



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 154/365 (42%), Gaps = 23/365 (6%)

Query: 24  DVSEQLHSYNRLIR----QGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIK 78
           +V   L +YN LI      G + E ++L++ M  K L L  D V +    + C       
Sbjct: 305 NVLPDLCTYNILINGLCNAGSMREGLELMDAM--KSLKLQPDVVTYNTLIDGCFELGLSL 362

Query: 79  EAFRFFKLVPNPTLS----TFNM-LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           EA +  + + N  +     T N+ L  +C   K      +V  LV   G   D   Y TL
Sbjct: 363 EARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTL 422

Query: 134 ITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I    K G +    E         +K + +  N ++ A  +   +D A ++L   +    
Sbjct: 423 IKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGF 482

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            VD   +T G L+       +V++A E++  + K  I  T   +   I      G  E A
Sbjct: 483 IVD--EVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELA 540

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
              +D++ + G++PD+   +++I      G+VE AFE   E+          + + L+  
Sbjct: 541 MEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNG 600

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
                  +KAL  +  +   +   TV T N +I+A C   +L +  ++LS+M+  GL P+
Sbjct: 601 LCKEGMTEKALNFFNTLIEEREVDTV-TYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPD 659

Query: 366 TITYS 370
             TY+
Sbjct: 660 RFTYN 664



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 46/199 (23%)

Query: 245 ACSVYDDMTKKGVI------------------------------------PDEVFLSALI 268
           A  V+DDM K GV                                     PD V  + ++
Sbjct: 188 AREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTIL 247

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                 G++    E+L + K  G+    ++Y++L+       + ++A ++ E MK   + 
Sbjct: 248 KAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVL 307

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL-- 386
           P + T N LI  LC+   + + +E++  MKSL L P+ +TY+ L+  C      E+GL  
Sbjct: 308 PDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGC-----FELGLSL 362

Query: 387 ---MLLSQAKEDGVIPNLV 402
               L+ Q + DGV  N V
Sbjct: 363 EARKLMEQMENDGVKANQV 381



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 105/257 (40%), Gaps = 37/257 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHAR----FFNVCKSQKAIKEAFRFFKLVPNP 90
           L ++ ++ E  +LL    ++G + +D+V +      FF   K +KA++      K+   P
Sbjct: 461 LCKERKLDEAHNLLNSAHKRGFI-VDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITP 519

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
           T+STFN L+        +E A +    + E+GL                           
Sbjct: 520 TVSTFNSLIGGLCHHGKTELAMEKFDELAESGLL-------------------------- 553

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
            PD   FN++I    + G V++AF+   E  +  H   PD+ T   L+      G  ++A
Sbjct: 554 -PDDSTFNSIILGYCKEGRVEKAFEFYNE--SIKHSFKPDNYTCNILLNGLCKEGMTEKA 610

Query: 211 REVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
              +  +I +  +      Y   I+   +    + A  +  +M +KG+ PD    ++ I 
Sbjct: 611 LNFFNTLIEEREVDTV--TYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFIS 668

Query: 270 FAGHAGKVEAAFEILQE 286
                GK+    E+L++
Sbjct: 669 LLMEDGKLSETDELLKK 685


>gi|255582603|ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528243|gb|EEF30297.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 841

 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 162/343 (47%), Gaps = 13/343 (3%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMF 147
           ++  +N ++   A ++  E +F   + VQ++G K D + Y  LIT+    G   K   ++
Sbjct: 252 SVYAYNRVIQHLAKAEKLELSFCCFKKVQDSGCKIDTQTYNALITSFLNKGLPYKAFEIY 311

Query: 148 ENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           E+++      D   +  +I +  +SG +D AF +  EM      + P      +L+ +  
Sbjct: 312 ESMQAAQCSLDASTYELMIPSLAKSGRLDVAFKLFQEMKER--KIRPSFGIFSSLVDSMG 369

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            +G++D + ++Y  +  + ++ +  +Y   I   ++ G  + A  ++D+M K G  P+  
Sbjct: 370 KSGRLDTSMKIYMEMQGFGLRSSASMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYG 429

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + +I+    +GK++ A  I ++    G      +YS L+   + +     A++LY  M
Sbjct: 430 LYTLIIESHAKSGKLDIATSIFKDMDKAGFLPTPSTYSCLLEMHAASGQVDSAMKLYNSM 489

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            +  LKP +ST  AL+T L     +    ++L +MK++G   +     +L+V   +   V
Sbjct: 490 TNAGLKPGLSTYTALLTLLASKKLVDVAAKILLEMKAMGFSVDVSASDVLMVYI-KDGSV 548

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNE 423
           ++ L  LS     G+  N  + + +   C ++  YE A+ L E
Sbjct: 549 DLALRWLSFMGSSGIRTNNFIIRQLFESCMKKGLYESAKPLLE 591



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 158/342 (46%), Gaps = 13/342 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           T+N L++   +      AF++   +Q A    D   Y  +I + AKSG++D  F+     
Sbjct: 290 TYNALITSFLNKGLPYKAFEIYESMQAAQCSLDASTYELMIPSLAKSGRLDVAFKLFQEM 349

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               ++P   +F++L+ + G+SG +D +  +  EM      +        +L+++   AG
Sbjct: 350 KERKIRPSFGIFSSLVDSMGKSGRLDTSMKIYMEMQG--FGLRSSASMYVSLIESYTKAG 407

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++D A  ++  + K   +    +YT+ I   +++G  + A S++ DM K G +P     S
Sbjct: 408 KLDTALRLWDEMKKAGFRPNYGLYTLIIESHAKSGKLDIATSIFKDMDKAGFLPTPSTYS 467

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L++    +G+V++A ++     N G+  G+ +Y++L+   ++ K    A ++   MK++
Sbjct: 468 CLLEMHAASGQVDSAMKLYNSMTNAGLKPGLSTYTALLTLLASKKLVDVAAKILLEMKAM 527

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
                VS  + L+  + DG  +   +  LS M S G+  N      L  +C +K   E  
Sbjct: 528 GFSVDVSASDVLMVYIKDG-SVDLALRWLSFMGSSGIRTNNFIIRQLFESCMKKGLYESA 586

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 427
             LL          +L+++  I+    R  E+      H++S
Sbjct: 587 KPLLETYVNSAAKVDLILYTSILANLVRCQEEQH--ERHLMS 626



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/220 (19%), Positives = 92/220 (41%), Gaps = 38/220 (17%)

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTK---KGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
           E Y +  +  ++  D++   S++D+M +   KG I      + +I     A K+E +F  
Sbjct: 216 ECYALLFDGLNKIRDFDGIQSLFDEMVQDSSKGGISSVYAYNRVIQHLAKAEKLELSFCC 275

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE----------------------- 320
            ++ ++ G  +   +Y++L+ +  N     KA E+YE                       
Sbjct: 276 FKKVQDSGCKIDTQTYNALITSFLNKGLPYKAFEIYESMQAAQCSLDASTYELMIPSLAK 335

Query: 321 ------------HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                        MK  K++P+    ++L+ ++    +L  +M++  +M+  GL  +   
Sbjct: 336 SGRLDVAFKLFQEMKERKIRPSFGIFSSLVDSMGKSGRLDTSMKIYMEMQGFGLRSSASM 395

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           Y  L+ +  +   ++  L L  + K+ G  PN  ++  II
Sbjct: 396 YVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGLYTLII 435


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 200/450 (44%), Gaps = 33/450 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L R  +I   I ++E+M   GL   +K +        + +  +  A R  + +      +
Sbjct: 221 LCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIE-EGNMNGALRIREQMVAAGCPS 279

Query: 95  FNMLMSVCASSKDSEGAFQ-VLRLVQE---AGLKADCKLYTTLITTCAKSGKV------- 143
            N+ ++V       EG  + VL  + E    G + D   + +L+    + G V       
Sbjct: 280 SNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEIL 339

Query: 144 DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M  E   PD   +N+LI    + G V+ A ++L +M   +    P+ +T   L+    
Sbjct: 340 DVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMI--LRDFSPNTVTYNTLISTLC 397

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              QV+ A E+ +++    I   P+V T    I     T +   A  ++++M  KG  PD
Sbjct: 398 KENQVEEATELARVLTSKGI--LPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPD 455

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 319
           E   + LID     G++E A  +L+E ++ G S  +++Y++L+ G C N K  ++A E++
Sbjct: 456 EFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKN-KRIEEAEEIF 514

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M+   +   V T N LI  LC   ++ +  +++  M   GL P+  TY+ LL    R 
Sbjct: 515 DEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRA 574

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--------RYEKARTLNEHVLSFNSG 431
            D++    ++     +G  P+ V +  +I   S+        R  +   L   VL+  + 
Sbjct: 575 GDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTY 634

Query: 432 RPQIE----NKWTSLALMVYREAIVAGTIP 457
            P I+     K TS A+ ++RE +  G  P
Sbjct: 635 NPVIKALFREKRTSEAVRLFREMMEKGDPP 664



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 163/368 (44%), Gaps = 16/368 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P ++TFN+L+     +     A  ++  +   GL  D K +TTL+    + G ++     
Sbjct: 209 PDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRI 268

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                        V  N L+    + G ++     + EM+ E     PD  T  +L+   
Sbjct: 269 REQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNE--GFRPDRFTFNSLVNGL 326

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G V  A E+  ++ +         Y   I    + G+ E A  + + M  +   P+ 
Sbjct: 327 CRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNT 386

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LI       +VE A E+ +   ++GI   + +++SL+       N + A+EL+E 
Sbjct: 387 VTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEE 446

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK+    P   T N LI +LC   +L + + +L +M+S G   N +TY+ L+    +   
Sbjct: 447 MKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKR 506

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKW 439
           +E    +  + +  G+  N+V +  +I G+C +RR E+A  L + +L     +P   +K+
Sbjct: 507 IEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQML-MEGLKP---DKF 562

Query: 440 TSLALMVY 447
           T  +L+ Y
Sbjct: 563 TYNSLLTY 570



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 168/397 (42%), Gaps = 19/397 (4%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H Y    ++GRI E +  +++M  +G       +++    +C+    +K A     ++ 
Sbjct: 288 VHGY---CKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGH-VKHALEILDVML 343

Query: 89  ----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
               +P + T+N L+       + E A ++L  +       +   Y TLI+T  K  +V+
Sbjct: 344 QEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVE 403

Query: 145 AMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
              E         + PD   FN+LI     +     A ++  EM  +     PD  T   
Sbjct: 404 EATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTK--GCHPDEFTYNM 461

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ +  + G+++ A  + K +           Y   I+   +    E A  ++D+M  +G
Sbjct: 462 LIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQG 521

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           +  + V  + LID      +VE A +++ +   +G+     +Y+SL+     A + +KA 
Sbjct: 522 ISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAA 581

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           ++ + M S   +P   T   LI  L    ++     +L  ++  G+     TY+ ++ A 
Sbjct: 582 DIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKAL 641

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
            R+      + L  +  E G  P+ V +K +  G+CS
Sbjct: 642 FREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCS 678



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 135/317 (42%), Gaps = 16/317 (5%)

Query: 109 EGAFQVLRLVQEAGLKADCKL----YTTLITTCAK-------SGKVDAMFEN--VKPDRV 155
           +G+F  +R V +      C++    +  LI + AK          VD M E   +K D  
Sbjct: 118 DGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAF 177

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
            +N L+        +     V + M +    + PD  T   L+KA   A Q+  A  + +
Sbjct: 178 TYNFLLNVLVDGNKLKLVEIVNSRMVS--RGIKPDVTTFNILIKALCRAHQIRPAILMME 235

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            +  Y +    + +T  +    + G+   A  + + M   G     V ++ L+      G
Sbjct: 236 EMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEG 295

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           ++E     + E  N+G      +++SL+       + + ALE+ + M      P + T N
Sbjct: 296 RIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYN 355

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
           +LI  LC   ++ + +E+L+ M      PNT+TY+ L+    +++ VE    L       
Sbjct: 356 SLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSK 415

Query: 396 GVIPNLVMFKCII-GMC 411
           G++P++  F  +I G+C
Sbjct: 416 GILPDVCTFNSLIQGLC 432



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 157/379 (41%), Gaps = 26/379 (6%)

Query: 17  KHANYAHDVSEQ------LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR 66
           KHA    DV  Q      + +YN LI    + G + E +++L  M  +        Y+  
Sbjct: 333 KHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTL 392

Query: 67  FFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
              +CK +  ++EA    +++ +    P + TFN L+     + +   A ++   ++  G
Sbjct: 393 ISTLCK-ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKG 451

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFENVKP--------DRVVFNALITACGQSGAVDRAF 174
              D   Y  LI +    G+++     +K         + V +N LI    ++  ++ A 
Sbjct: 452 CHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAE 511

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
           ++  EM  E+  +  + +T   L+       +V+ A ++   +    +K     Y   + 
Sbjct: 512 EIFDEM--ELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLT 569

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
              + GD + A  +   MT  G  PD V    LI     AG+VE A  +L+  + +G+ +
Sbjct: 570 YFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVL 629

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD-GDQLPKTMEV 353
              +Y+ ++ A    K   +A+ L+  M      P   T   +   LC  G  + + ++ 
Sbjct: 630 APQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDF 689

Query: 354 LSDMKSLGLCPNTITYSIL 372
           L +M   G  P+  ++ +L
Sbjct: 690 LVEMTDKGFLPDFSSFLML 708


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 170/358 (47%), Gaps = 24/358 (6%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPNPTL----STFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           + +CK+ + ++EA +   ++    L    +T+  ++  CA ++  E    V + + E G+
Sbjct: 29  WRLCKAGR-LREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGV 87

Query: 124 KADCKLYTTLITTCAKSGKV---DAMFENVK-PDRVVFNALITACGQSGAVDRAFDVLAE 179
           + D  L  +LI   +K   V   + +F  +   D V ++++I A   +    +AFD    
Sbjct: 88  EIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFER 147

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
           M      ++P+ IT  +++KAC N   +++ R+++ ++    ++    V T  I   S+ 
Sbjct: 148 MTDA--NIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKC 205

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G+   AC V+  MT++ V+      +A+I       K+  AFE+ ++    GIS   +++
Sbjct: 206 GEISVACEVFHKMTERNVVS----WTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTF 261

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
            SL+ +C+  +   +   ++ H+    L+  +   NALIT  C  + + +  E+   M  
Sbjct: 262 VSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSK 321

Query: 360 LGLCPNTITYSILLVACER-----KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
                + I++S ++    +     K+ ++    LL + + +GV PN V F  I+  C+
Sbjct: 322 ----RDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACT 375



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 156/355 (43%), Gaps = 25/355 (7%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF--------FKLVPNPTL 92
           I E   LLE M R+G+   +KV        C +  A+++  +         F+L  +   
Sbjct: 345 IDEVFQLLERMRREGVFP-NKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQT 403

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP 152
           + FNM  + C S  ++E  F  +         +    + ++   C      + +F  +  
Sbjct: 404 AIFNMY-AKCGSIYEAEQVFSKMANKNVVAWTS----FLSMYIKCGDLSSAEKVFSEMPT 458

Query: 153 DRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
             VV +N +I    Q+G + + F++L+ M AE     PD +T+  +++AC     ++R +
Sbjct: 459 RNVVSWNLMIAGYAQNGDIVKVFELLSSMKAE--GFQPDRVTVITILEACGALAGLERGK 516

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            V+    K  ++    V T  I   S+ G    A +V+D M+ +    D V  +A++   
Sbjct: 517 LVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNR----DTVAWNAMLAGY 572

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK-SIKLKPT 330
           G  G    A ++ +    + +S   I+ ++++ ACS A   Q+  E++  M+   K+ P 
Sbjct: 573 GQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPR 632

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
                 ++  L    +L +  E +   +S+   P+   +  LL AC+  ++V++ 
Sbjct: 633 KQHYGCMVDLLGRAGRLQEAEEFI---QSMPCEPDISVWHALLGACKSHNNVQLA 684



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/398 (21%), Positives = 163/398 (40%), Gaps = 65/398 (16%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLST 94
           G IS   ++   M  + ++    +  A         + + EAF  ++ +     +P   T
Sbjct: 206 GEISVACEVFHKMTERNVVSWTAIIQAN-----AQHRKLNEAFELYEQMLQAGISPNAVT 260

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFENV- 150
           F  L++ C + +      ++   + E GL+ D  +   LIT   K   V     +F+ + 
Sbjct: 261 FVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMS 320

Query: 151 KPDRVVFNALITACGQSG-----AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           K D + ++A+I    QSG     ++D  F +L  M  E   V P+ +T  ++++AC   G
Sbjct: 321 KRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRRE--GVFPNKVTFMSILRACTAHG 378

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +++ R+++  + K   +    + T   N  ++ G    A  V+  M  K V+    FLS
Sbjct: 379 ALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLS 438

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
             I      G + +A ++  E   +                 N  +W             
Sbjct: 439 MYIK----CGDLSSAEKVFSEMPTR-----------------NVVSW------------- 464

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
                    N +I        + K  E+LS MK+ G  P+ +T   +L AC     +E G
Sbjct: 465 ---------NLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERG 515

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 421
            ++ ++A + G+  + V+   +IGM S+  +  +ART+
Sbjct: 516 KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTV 553



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 15/222 (6%)

Query: 57  LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116
           L+ D V       +      + EA   F  + N     +N +++      D   A  + +
Sbjct: 527 LESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFK 586

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDA-------MFENVK--PDRVVFNALITACGQS 167
            + +  +  +    T +I+ C+++G V         M E+ K  P +  +  ++   G++
Sbjct: 587 RMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRA 646

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
           G +  A + +  M     P +PD     AL+ AC +   V  A      I +        
Sbjct: 647 GRLQEAEEFIQSM-----PCEPDISVWHALLGACKSHNNVQLAERAAHHILELE-PSYAS 700

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           VY    N  +Q G W+ +  V   M  +G+  D    S  ID
Sbjct: 701 VYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEID 742


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 177/404 (43%), Gaps = 20/404 (4%)

Query: 25  VSEQLHSYNR----LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   L ++N+    L ++G + E   LL  + ++G+      Y+     +C++ + + EA
Sbjct: 185 VFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR-LPEA 243

Query: 81  FRF---FKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            R     +    P + T+N L+  +C  S   E A   LR +   G   D   Y T+I  
Sbjct: 244 VRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQE-AMHYLRRMMNQGCLPDDFTYNTIIDG 302

Query: 137 CAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K   V        DA+F+   PD+V + +LI      G V+RA ++  E  A+   + 
Sbjct: 303 YCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE--AQAKGIK 360

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD +   +L+K     G +  A +V   + +       + Y I IN   + G+   A  V
Sbjct: 361 PDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVV 420

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            +D   KG +PD    + LID      K+++A ++++     GI+   I+Y+S++     
Sbjct: 421 MNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCK 480

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           A    +  E ++ M      P   T N LI   C  +++ +  +V+  M   GL P+ ++
Sbjct: 481 AGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVS 540

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           ++ L+    R  D+E   +L  + +E G       F  +IG  S
Sbjct: 541 FNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFS 584



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 162/388 (41%), Gaps = 19/388 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    +   + E  +LL+D   KG +  D+V +    N   ++  ++ A   F  
Sbjct: 295 TYNTIIDGYCKISMVQEATELLKDAVFKGFVP-DQVTYCSLINGLCAEGDVERALELFNE 353

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                  P +  +N L+           A QV+  + E G   D + Y  +I    K G 
Sbjct: 354 AQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGN 413

Query: 143 V--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +        DA+ +   PD   FN LI    +   +D A  ++  M    + + PD IT 
Sbjct: 414 ISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE--YGIAPDTITY 471

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +++     AG+V+   E ++ +        P  Y I I    ++   E A  V   M++
Sbjct: 472 NSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQ 531

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           +G+ PD V  + LI      G +E A+ + Q+ + +G S    ++++L+GA S   N   
Sbjct: 532 EGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHM 591

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ++++ M S   +    T   LI   C    + +    L +M   G  P+  T+  ++ 
Sbjct: 592 AEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVIN 651

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLV 402
           +      V   + ++    + GV+P +V
Sbjct: 652 SLTVNHRVFQAVGIIHIMVKIGVVPEVV 679



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/434 (21%), Positives = 174/434 (40%), Gaps = 53/434 (12%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  L +YN  IR     GR+ E + L++ M    + D+   Y+     +CK     +EA
Sbjct: 220 MSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDV-VTYNTLIRGLCKKSMP-QEA 277

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             + + + N    P   T+N ++         + A ++L+     G   D   Y +LI  
Sbjct: 278 MHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLING 337

Query: 137 CAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHP- 186
               G V+   E         +KPD VV+N+L+      G +  A  V+ EM  E  HP 
Sbjct: 338 LCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPD 397

Query: 187 -------------------------------VDPDHITIGALMKACANAGQVDRAREVYK 215
                                            PD  T   L+       ++D A ++ +
Sbjct: 398 IQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVE 457

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            + +Y I      Y   +N   + G        + +M  KG  P+ +  + LI+    + 
Sbjct: 458 RMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSN 517

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           K+E A +++ +   +G+    +S+++L+ G C N  + + A  L++ ++      T  T 
Sbjct: 518 KMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNG-DLEGAYLLFQKLEEKGYSATADTF 576

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N LI A      +    ++  +M S G   ++ TY +L+    +  +V+   M L +  +
Sbjct: 577 NTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIK 636

Query: 395 DGVIPNLVMFKCII 408
            G IP++  F  +I
Sbjct: 637 KGFIPSMSTFGRVI 650



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 128/324 (39%), Gaps = 44/324 (13%)

Query: 130 YTTLITTCAKSGKVDAMFENVKPDRV---------VFNALITACGQSGAVDRAFDVLAEM 180
           Y  LI   A +G+VDA+   V   R          ++ A I A  ++G +  A D    M
Sbjct: 20  YCALIRPLASAGRVDAVDAAVASARSRLSPATIHPLYVASIRAYARAGRLRDAVDAFERM 79

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KM--------IHKYNIK-------G 224
           +    P  P      A+M A  +A   D+A +VY +M        +H + I+        
Sbjct: 80  DLFACP--PAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTA 137

Query: 225 TPEV---------------YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
            P +               Y   +      G    A  ++D M    V P+    + ++ 
Sbjct: 138 RPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLH 197

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G V  A  +L +   +G+S+ + +Y+  +     A    +A+ L + M++  + P
Sbjct: 198 ALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-P 256

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            V T N LI  LC      + M  L  M + G  P+  TY+ ++    +   V+    LL
Sbjct: 257 DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELL 316

Query: 390 SQAKEDGVIPNLVMFKCII-GMCS 412
             A   G +P+ V +  +I G+C+
Sbjct: 317 KDAVFKGFVPDQVTYCSLINGLCA 340



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 69/362 (19%), Positives = 140/362 (38%), Gaps = 68/362 (18%)

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
           A +HP+        A ++A A AG++  A + ++ +  +        Y   ++       
Sbjct: 50  ATIHPL------YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAY 103

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            + A  VY  M   GV PD    +  +       +   A  +L+   ++G     ++Y +
Sbjct: 104 HDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGA----VAYCT 159

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           ++       +   A +L++ M    + P ++  N ++ ALC    + +   +L  +   G
Sbjct: 160 VVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRG 219

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV----IPNLVMFKCII-GMCSRRYE 416
           +  N  TY+I +     +   E G +  +    DG+    +P++V +  +I G+C +   
Sbjct: 220 MSINLFTYNIWI-----RGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMP 274

Query: 417 KA------RTLNEHVLSFNSGRPQIENKWTSLALM-----VYREAIVAGTIPTVEVVSKV 465
           +       R +N+  L  +     I + +  ++++     + ++A+  G +P        
Sbjct: 275 QEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPD------- 327

Query: 466 LGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF-GEYD-PRAFSLLEEAASFGI 523
               Q+ Y                        CSLI+G   E D  RA  L  EA + GI
Sbjct: 328 ----QVTY------------------------CSLINGLCAEGDVERALELFNEAQAKGI 359

Query: 524 VP 525
            P
Sbjct: 360 KP 361


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 110/468 (23%), Positives = 192/468 (41%), Gaps = 31/468 (6%)

Query: 15  NGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ 74
           NG + +   + SE +H   RLIR G + E    LE M  KG +       A     CK  
Sbjct: 60  NGVNTSLNFEESE-IHHLCRLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIG 118

Query: 75  KAIKEAFRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           +  K A R   ++         +++N+L++    S + E   + LR++    +  +   Y
Sbjct: 119 RT-KNATRIMGILEESGAVIDANSYNVLINAYCKSGEIE---EALRVLDHTSVAPNAATY 174

Query: 131 TTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
             ++ +    GK+    +           PD V    LI A  +   V +A  +  EM  
Sbjct: 175 DAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRG 234

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
           +     PD +T   L+K     G++D A    K +  Y  +     + + +      G W
Sbjct: 235 K--GCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRW 292

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
             A  +   M +KG  P  V  + LI+F    G +  A  +L+     G +    S++ L
Sbjct: 293 MDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPL 352

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +    N K   +A+E  E M S    P + T N L+TALC   ++   + +LS + S G 
Sbjct: 353 IQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGC 412

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--------- 413
            P+ I+Y+ ++    +    E+ + LL +    G+ P+L+    ++G  SR         
Sbjct: 413 SPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIK 472

Query: 414 --RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPT 458
              Y K   +  +   +NS    + + + TSLA+    + +  G  PT
Sbjct: 473 FFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPT 520



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/316 (23%), Positives = 140/316 (44%), Gaps = 17/316 (5%)

Query: 71  CKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKA 125
           CK +  + +A + F  +      P + T+N+L+   C   +  E A   L+ +   G ++
Sbjct: 217 CK-ESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDE-AIIFLKKLPSYGCQS 274

Query: 126 DCKLYTTLITTCAKSGK-VDAM-------FENVKPDRVVFNALITACGQSGAVDRAFDVL 177
           D   +  ++ +    G+ +DAM        +   P  V FN LI    Q G + +A +VL
Sbjct: 275 DVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVL 334

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
             M    H   P+  +   L++   N   +DRA E  +++           Y I +    
Sbjct: 335 EMMPKHGHT--PNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALC 392

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           + G  + A  +   ++ KG  P  +  + +ID     GK E A E+L+E   +G+   +I
Sbjct: 393 KDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLI 452

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           + +S++G  S      +A++ + ++K   +KP     N+++  LC   Q    ++ L DM
Sbjct: 453 TCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDM 512

Query: 358 KSLGLCPNTITYSILL 373
            + G  P   +Y+ L+
Sbjct: 513 VANGCKPTEASYTTLI 528



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 124/317 (39%), Gaps = 15/317 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           ++  + + + L  +M  KG       Y+      CK  + + EA  F K +P+      +
Sbjct: 218 KESGVGQAMKLFNEMRGKGCKPDVVTYNVLIKGFCKEGR-LDEAIIFLKKLPSYGCQSDV 276

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKS--GKVDAMFEN 149
            + NM++    S      A ++L  +   G       +  LI   C K   GK   + E 
Sbjct: 277 ISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEM 336

Query: 150 V-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           +      P+   FN LI        +DRA + L  M +      PD +T   L+ A    
Sbjct: 337 MPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSR--GCYPDIVTYNILLTALCKD 394

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G+VD A  +   +       +   Y   I+   + G  E A  + ++M  KG+ PD +  
Sbjct: 395 GKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITC 454

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++++      GKV  A +     K  GI      Y+S+M     A+    A++    M +
Sbjct: 455 TSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVA 514

Query: 325 IKLKPTVSTMNALITAL 341
              KPT ++   LI  +
Sbjct: 515 NGCKPTEASYTTLIKGI 531


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 145/287 (50%), Gaps = 10/287 (3%)

Query: 130 YTTLIT-TCAKSGKVDAM-------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           YTTLI   C     ++A+        +N+ PD   F+ LI A G+ G +  A  VLA M 
Sbjct: 247 YTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMM 306

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
                V PD +T  +L+       +V  A+ V+  + +  +    + YTI I+   +T  
Sbjct: 307 KAY--VKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKM 364

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            + A S++++M  K VIP+ +  ++LID    +G++   ++++ + +++     +I+YSS
Sbjct: 365 VDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSS 424

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+ A     +  +A+ L++ M + +++P + T   LI  LC G +L    EV   +   G
Sbjct: 425 LIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKG 484

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              +  TY++++    +    +  L LLS+ +++G IPN + F  II
Sbjct: 485 YHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIII 531



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/262 (20%), Positives = 110/262 (41%), Gaps = 37/262 (14%)

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
           F+ +  D V  N LI      G +  +F VLA +    +   PD IT+  L+K     G+
Sbjct: 97  FKGITSDLVTLNILINCFCHLGQITLSFSVLATILKRGY--HPDVITLTTLIKGLCLRGE 154

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           V +A + +                                   DD+       D +    
Sbjct: 155 VKKALKFH-----------------------------------DDVVALEFQLDRISYGT 179

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LI+     G+ +AA ++++  + + I   ++ Y+ ++ +    K   +A  LY  M + +
Sbjct: 180 LINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQ 239

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           + P V T   LI   C    L + + +L++MK   + P+  T+SIL+ A  ++  ++   
Sbjct: 240 IYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAK 299

Query: 387 MLLSQAKEDGVIPNLVMFKCII 408
           ++L+   +  V P++V +  ++
Sbjct: 300 IVLAVMMKAYVKPDVVTYNSLV 321



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 81/168 (48%), Gaps = 1/168 (0%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A S+   +  KG+  D V L+ LI+   H G++  +F +L     +G    +I+ ++L+ 
Sbjct: 88  AISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIK 147

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                   +KAL+ ++ + +++ +    +   LI  LC   +    ++++ +++   + P
Sbjct: 148 GLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKP 207

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + + Y+I++ +  +   V     L S+     + PN+V +  +I G C
Sbjct: 208 DVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFC 255


>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Glycine max]
          Length = 495

 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 159/373 (42%), Gaps = 27/373 (7%)

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           R FN   S  A+    R  +L P+P   T  +L    AS+     A +    + E G++ 
Sbjct: 118 RDFN---SAWALVGRMRSLRLGPSP--KTLAILAERYASNGKPHRAVRTFLSMAEHGIRQ 172

Query: 126 DCKLYTTLITTCAKSGKVDA-------MFENVKPDRVVFNALITACGQSGAVDRAFDVLA 178
           D   + TL+    KS +V+        +    +PD V +N L            A  VL 
Sbjct: 173 DLHSFNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGYCLIKRTPMALRVLK 232

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
           EM      ++P  +T   ++K    + Q+  A E Y  + K   +     YT  I+    
Sbjct: 233 EMVQR--GIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGV 290

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GII 297
            GD + A  V+ +M K+GV+P+    +ALI        VE A  + +E   +G+ V  ++
Sbjct: 291 AGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVV 350

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +Y+ ++    +  + ++AL   E M    L+  V T N +I   CD  ++ K +EV   M
Sbjct: 351 TYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKALEVFGKM 410

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP-NLVMFKCIIGMCSRRYE 416
                 PN  TY++L+ A           M + +  ED V+   L+M     G   R++ 
Sbjct: 411 GDGSCLPNLDTYNVLISA-----------MFVRKKSEDLVVAGKLLMDMVDRGFLPRKFT 459

Query: 417 KARTLNEHVLSFN 429
             R LN  V++ N
Sbjct: 460 FNRVLNGLVITGN 472



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 136/326 (41%), Gaps = 37/326 (11%)

Query: 79  EAFRFFKLV----PNPTLS--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           +A +FFK +    P+ T S  +F+  + + A  +D   A+ ++  ++   L    K    
Sbjct: 85  KALQFFKHLDRHHPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAI 144

Query: 133 LITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           L    A +GK         P R V               R F  +AE     H +  D  
Sbjct: 145 LAERYASNGK---------PHRAV---------------RTFLSMAE-----HGIRQDLH 175

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +   L+     + +V+ A  + K +     +     Y I  N          A  V  +M
Sbjct: 176 SFNTLLDILCKSKRVETAHSLLKTLTS-RFRPDTVTYNILANGYCLIKRTPMALRVLKEM 234

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            ++G+ P  V  + ++     + +++ A+E   E K +   + +++Y++++     A + 
Sbjct: 235 VQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVIHGFGVAGDV 294

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSI 371
           +KA  ++  M    + P V+T NALI  LC  D +   + V  +M   G+C PN +TY++
Sbjct: 295 KKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVCVPNVVTYNV 354

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGV 397
           ++       D+E  L  + +  E G+
Sbjct: 355 VIRGLCHVGDMERALGFMERMGEHGL 380



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 112/266 (42%), Gaps = 23/266 (8%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H + + LHS+N L+    +  R+     LL+ +  +     D V +    N     K   
Sbjct: 168 HGIRQDLHSFNTLLDILCKSKRVETAHSLLKTLTSR--FRPDTVTYNILANGYCLIKRTP 225

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
            A R  K +      PT+ T+N ++     S   + A++    +++   + D   YTT+I
Sbjct: 226 MALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVTYTTVI 285

Query: 135 TTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
                +G V        + + E V P+   +NALI    +  +V+ A  V  EM  E   
Sbjct: 286 HGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMAREGVC 345

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           V P+ +T   +++   + G ++RA    + + ++ ++   + Y + I      G+ E A 
Sbjct: 346 V-PNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEVEKAL 404

Query: 247 SVYDDMTKKGVIPD----EVFLSALI 268
            V+  M     +P+     V +SA+ 
Sbjct: 405 EVFGKMGDGSCLPNLDTYNVLISAMF 430


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 169/424 (39%), Gaps = 55/424 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L+R+G + E + L+    R      D    A       +     EA R       P +  
Sbjct: 77  LVRRGELDEALRLVGSARRP-----DAGTCAALIKKLSASGRTAEARRVLAAC-GPDVMA 130

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAMF 147
           +N +M+    +   + A    R   E  ++ D     TLI      G+       +D M 
Sbjct: 131 YNAMMAGYCGAGQVDAAR---RWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEML 187

Query: 148 EN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
                PD V +  L+ A  +     +A  +L EM  +     PD +T   ++      G+
Sbjct: 188 RRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDK--GCTPDIVTYNVVVNGICQEGR 245

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           VD A E  K +  Y  +     Y I +        WE A  +  +M +KG  P+ V  + 
Sbjct: 246 VDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNM 305

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LI F    G VE A E+L++    G S   +SY+ L+ A    K   KA+   + M S  
Sbjct: 306 LISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG 365

Query: 327 LKPTVSTMNALITALC-------------------------------DG----DQLPKTM 351
             P + + N L+TALC                               DG     +  + +
Sbjct: 366 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEAL 425

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
           E+L++M S GL P+ ITYS +     R+D +E  +    + ++ G+ PN V++  II G+
Sbjct: 426 ELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGL 485

Query: 411 CSRR 414
           C RR
Sbjct: 486 CKRR 489



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 152/327 (46%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P + T+ +L+         + A ++L  +++ G   D   Y  ++    + G+VD   E 
Sbjct: 193 PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEF 252

Query: 150 VK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +K        P+ V +N ++     +   + A +++ EM  +  P  P+ +T   L+   
Sbjct: 253 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP--PNVVTFNMLISFL 310

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G V+ A EV + I KY        Y   ++   +    + A +  D M  +G  PD 
Sbjct: 311 CRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDI 370

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L+     +G+V+ A E+L + K++G +  +ISY++++   + A   ++ALEL   
Sbjct: 371 VSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNE 430

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S  L+P + T + +   LC  D++   +     ++ +G+ PNT+ Y+ +++   ++ +
Sbjct: 431 MVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRE 490

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
               + L +    +G +PN   +  +I
Sbjct: 491 THSAIDLFAYMIGNGCMPNESTYTILI 517



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 136/310 (43%), Gaps = 15/310 (4%)

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFENVKPDRVVFNALITACGQSGA 169
           + LRLV  A  + D      LI   + SG+      +     PD + +NA++     +G 
Sbjct: 85  EALRLVGSA-RRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMMAGYCGAGQ 143

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEV 228
           VD A    AE       V+ D  T   L++     G+   A  V  +M+ +   +  P+V
Sbjct: 144 VDAARRWCAE-----RAVERDAYTCDTLIRGLCGRGRTANALAVLDEMLRR---RCVPDV 195

Query: 229 --YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             YTI +    +   ++ A  + D+M  KG  PD V  + +++     G+V+ A E L+ 
Sbjct: 196 VTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKN 255

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
             + G     +SY+ ++     A+ W+ A EL   M      P V T N LI+ LC    
Sbjct: 256 LPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGL 315

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +   +EVL  +   G  PN+++Y+ LL A  ++  ++  +  L      G  P++V +  
Sbjct: 316 VEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNT 375

Query: 407 IIGMCSRRYE 416
           ++    R  E
Sbjct: 376 LLTALCRSGE 385


>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 917

 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 180/407 (44%), Gaps = 21/407 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----KAIKEAFRFFKLVPNPT 91
           ++G +       +++E  GL     VY+       K++       + E  R   +VP+  
Sbjct: 370 KEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGI 429

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFE 148
             TFN L++        E   ++LR +  +GL  D  L    +     +G+ D    + E
Sbjct: 430 --TFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLE 487

Query: 149 N-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           N     + P  V FN++I A G +G  +RAF     M      + P   T  +L+ +   
Sbjct: 488 NLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVK--FGLTPSSSTCSSLLISLVR 545

Query: 204 AGQVDRAR-EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            G +D A   +Y MI K     T   +T+ ++   + G    A S++++M  +GV PD V
Sbjct: 546 KGSLDEAWIALYDMIDK-GFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAV 604

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +A I+    +G +  A+++  +   +G       Y+SL+G         +AL+L   M
Sbjct: 605 AFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREM 664

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               L P + T+N +I  LC   ++   +E   DM  +GL P+ +TY+ L+    +  DV
Sbjct: 665 NKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDV 724

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLS 427
                L+ +  + G  P+L  +   I G C+ R+  +A  + E ++S
Sbjct: 725 GGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELIS 771



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/432 (21%), Positives = 189/432 (43%), Gaps = 30/432 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           ++N L+    R G+  +   LL D+   GLL    +       +C + +   EA +    
Sbjct: 430 TFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGR-YDEAMKLLEN 488

Query: 85  ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K +P P++  FN +++   ++   E AF    ++ + GL       ++L+ +  + G
Sbjct: 489 LLGKGIP-PSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKG 547

Query: 142 KVD----AMFENVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            +D    A+++ +        + F  L+    + GAV+ A  +  EM      V PD + 
Sbjct: 548 SLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKG--RGVFPDAVA 605

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             A +     +G +  A +V+  + +        VY   I    + G    A  +  +M 
Sbjct: 606 FAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMN 665

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           K+G++PD   ++ +I      G+++ A E   +    G+S  I++Y++L+     A +  
Sbjct: 666 KRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVG 725

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A +L   M     +P ++T N  I   C   ++ + + +L ++ S+G+ PNT+TY+ ++
Sbjct: 726 GADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMI 785

Query: 374 VA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFK------CIIGMCSRRYEKARTLNEHVL 426
            A C     ++  ++L ++  +   +PN V         C  GM  +     + L+E  L
Sbjct: 786 NAVCNVI--LDHAMILTAKLLKMAFVPNTVTVNVLLSQFCKQGMPEKAIFWGQKLSEIHL 843

Query: 427 SFNSGRPQIENK 438
            F+    ++ N+
Sbjct: 844 DFDETTHKLMNR 855



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 155/392 (39%), Gaps = 49/392 (12%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-KSQKAIKEAFRFF--KLVP 88
           +  LIR G       L  D+ RKG    +  ++      C K    I EA      K   
Sbjct: 260 FRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRC 319

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---A 145
            P + ++N++++       S  A  +L L+ E G K     + T+I    K G V+    
Sbjct: 320 EPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARK 379

Query: 146 MFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            F+ ++      + +V+N +I+   ++  + +A  +  EM  +   + PD IT   L+  
Sbjct: 380 YFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTK--DIVPDGITFNTLVAG 437

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G+ +    + +                                   D++  G++ D
Sbjct: 438 HYRYGKEEDGNRLLR-----------------------------------DLSVSGLLHD 462

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
                  +     AG+ + A ++L+    +GI   +++++S++ A  NA   ++A   Y 
Sbjct: 463 SSLCDVTVAGLCWAGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYG 522

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    L P+ ST ++L+ +L     L +    L DM   G     + +++LL    R  
Sbjct: 523 IMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIG 582

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            V +   L ++ K  GV P+ V F   I G+C
Sbjct: 583 AVNMAESLWNEMKGRGVFPDAVAFAAFINGLC 614



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 108/262 (41%), Gaps = 20/262 (7%)

Query: 155 VVFNALITACGQSGAVDRAF-DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           ++F  LI A G  GAV + F DV+ +      P  P++ T   L+      G       +
Sbjct: 258 ILFRLLIRA-GDCGAVWKLFGDVVRK-----GPC-PNNFTFNLLILEFCRKGWTRIGEAL 310

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
             ++ K+  +     Y I IN     G   +A  + + M + G  P       +ID    
Sbjct: 311 LHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCK 370

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
            G VE A +   E ++ G+S   I Y+ ++     A++  +A  L+E M++  + P   T
Sbjct: 371 EGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGIT 430

Query: 334 MNALITALC------DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            N L+          DG++L + + V   +    LC  T+     L    R D+    + 
Sbjct: 431 FNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAG---LCWAGRYDE---AMK 484

Query: 388 LLSQAKEDGVIPNLVMFKCIIG 409
           LL      G+ P++V F  II 
Sbjct: 485 LLENLLGKGIPPSVVAFNSIIA 506


>gi|168014765|ref|XP_001759922.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689052|gb|EDQ75426.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/351 (23%), Positives = 162/351 (46%), Gaps = 41/351 (11%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD------ 144
           ++ TFN L+      +    A +V+R ++  G++ D   +TTL+   ++SGK+D      
Sbjct: 302 SIYTFNALLRAVVEGRGVSHALRVVRSMEAVGVRPDTHTFTTLLDGYSRSGKLDKAEALL 361

Query: 145 AMFENVKPDR----VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           A  E+ KP++      +N LI AC      +RA  V A+M        PD  T  AL+ A
Sbjct: 362 AKMEDSKPNQRPSIYTYNILIKACASKNDPERALRVFAKMKES--GTAPDSHTYCALLSA 419

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           C                    + G P++     +  S+    +   ++  DM + GV   
Sbjct: 420 CG------------------AVSGRPDLS----DAWSRKEVAQRVIAIEKDMAQSGVHHT 457

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-----VGIISYSSLMGACSNAKNWQKA 315
              +SAL+   G  G V+A  + L+  +   ++     +   +Y++ M A   +K + +A
Sbjct: 458 AASVSALMSVLGSEGIVDAMLQNLRACQETDLTTRKKLLDTTAYNTAMNAFVQSKKFDEA 517

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            +++  M+S+ ++P + T N LI A      +   +E++  M+   + P+ ITY+ L+  
Sbjct: 518 WDIFTEMRSLDVRPDIYTYNILINACSHKQSVSTALELMDIMRKAKIAPDLITYNSLIKV 577

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL 426
                +++ GL +L + ++ GV P++  F  ++   S  Y K + L E+++
Sbjct: 578 MCHCGELDSGLRVLGEMQDAGVQPDVTTFNTLLASAS--YHKRKGLAEYLV 626



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 88/366 (24%), Positives = 157/366 (42%), Gaps = 37/366 (10%)

Query: 29  LHSYNRLIR---QGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           ++++N L+R   +GR +S  + ++  ME  G+      +        +S K  K      
Sbjct: 303 IYTFNALLRAVVEGRGVSHALRVVRSMEAVGVRPDTHTFTTLLDGYSRSGKLDKAEALLA 362

Query: 85  KL---VPN--PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC-A 138
           K+    PN  P++ T+N+L+  CAS  D E A +V   ++E+G   D   Y  L++ C A
Sbjct: 363 KMEDSKPNQRPSIYTYNILIKACASKNDPERALRVFAKMKESGTAPDSHTYCALLSACGA 422

Query: 139 KSGK---VDAMFENVKPDRVV-----------------FNALITACGQSGAVDRAFDVL- 177
            SG+    DA        RV+                  +AL++  G  G VD     L 
Sbjct: 423 VSGRPDLSDAWSRKEVAQRVIAIEKDMAQSGVHHTAASVSALMSVLGSEGIVDAMLQNLR 482

Query: 178 --AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAI 233
              E +        D       M A   + + D A +++  +   +++  P++YT  I I
Sbjct: 483 ACQETDLTTRKKLLDTTAYNTAMNAFVQSKKFDEAWDIFTEMRSLDVR--PDIYTYNILI 540

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           N CS       A  + D M K  + PD +  ++LI    H G++++   +L E ++ G+ 
Sbjct: 541 NACSHKQSVSTALELMDIMRKAKIAPDLITYNSLIKVMCHCGELDSGLRVLGEMQDAGVQ 600

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
             + ++++L+ + S  K    A  L E M+   + P   T + +I+       L +  E 
Sbjct: 601 PDVTTFNTLLASASYHKRKGLAEYLVEEMRLCNVAPDTHTCSQVISLYMRSGNLAEASEA 660

Query: 354 LSDMKS 359
           LS + S
Sbjct: 661 LSVLSS 666



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 84/179 (46%), Gaps = 17/179 (9%)

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +ALI+ AG AG+ + A  +  E +N G+ + I ++++L+ A    +    AL +   M+
Sbjct: 271 FNALINAAGQAGQHKLAESLFSEMRNLGLRLSIYTFNALLRAVVEGRGVSHALRVVRSME 330

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDD 381
           ++ ++P   T   L+       +L K   +L+ M+       P+  TY+IL+ AC  K+D
Sbjct: 331 AVGVRPDTHTFTTLLDGYSRSGKLDKAEALLAKMEDSKPNQRPSIYTYNILIKACASKND 390

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 440
            E  L + ++ KE G  P+   +  ++  C                  SGRP + + W+
Sbjct: 391 PERALRVFAKMKESGTAPDSHTYCALLSACGAV---------------SGRPDLSDAWS 434



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 6/149 (4%)

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           AL+ A   AGQ   A  ++  +    ++ +   +   +    +      A  V   M   
Sbjct: 273 ALINAAGQAGQHKLAESLFSEMRNLGLRLSIYTFNALLRAVVEGRGVSHALRVVRSMEAV 332

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK----NQGISVGIISYSSLMGACSNAKN 311
           GV PD    + L+D    +GK++ A  +L + +    NQ  S  I +Y+ L+ AC++  +
Sbjct: 333 GVRPDTHTFTTLLDGYSRSGKLDKAEALLAKMEDSKPNQRPS--IYTYNILIKACASKND 390

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITA 340
            ++AL ++  MK     P   T  AL++A
Sbjct: 391 PERALRVFAKMKESGTAPDSHTYCALLSA 419


>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 506

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 187/410 (45%), Gaps = 25/410 (6%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H +     +YN L+    R GR+ E   LL++M  + ++     Y   F  + ++  +  
Sbjct: 79  HGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKA 138

Query: 79  EAFRFFKLVPNP-TLSTFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
               F K + N  T+  +    +L  +C   K S  A +VL+ +  AGL     +Y TLI
Sbjct: 139 MLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSI-AEEVLQSLVNAGLVPTRVIYNTLI 197

Query: 135 TTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               ++G+++  F         ++KPD + +NALI    ++  +  A D+L EM  + + 
Sbjct: 198 NGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEM--QDNG 255

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           V+P   T   L+ A    GQ+++   V   + +  +K     Y   +N   + G    A 
Sbjct: 256 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 315

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           ++ DDM  K V+P+    +A+ID     G  + AF ++++ K+ GIS  I++Y+ L+   
Sbjct: 316 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 375

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            N     +A E+   + + +L P   + N LI+A C    + K +++   M   G+    
Sbjct: 376 CNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTV 435

Query: 367 ITYSIL---LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            TY  L   L    R +++E    L  +  ++ V+P+  +   ++   S+
Sbjct: 436 RTYHQLISGLGGAGRLNEMEY---LYQKMMQNNVVPSNAIHNIMVEAYSK 482



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 174/384 (45%), Gaps = 21/384 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAF 81
           +YN +I    + G +     L + M   GL      Y+     +C++ +     A+ +  
Sbjct: 52  TYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 111

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K+VP+    T+++L    + + DS+    +     + G+       + L+    K G
Sbjct: 112 ASQKMVPDGF--TYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDG 169

Query: 142 KVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           KV    E ++        P RV++N LI    Q+G ++ AF    +M +    + PDHIT
Sbjct: 170 KVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSR--HIKPDHIT 227

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+     A ++  A+++   +    +  T E +   I+   +TG  E    V  +M 
Sbjct: 228 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 287

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + G+ P+ V   ++++     GK+  A  IL +  ++ +      Y++++ A        
Sbjct: 288 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 347

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A  L E MKS  + P++ T N LI  LC+  Q+ +  E+++ + +  L P+ ++Y+ L+
Sbjct: 348 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 407

Query: 374 VACERKDDVEVGLMLLSQAKEDGV 397
            AC  + +++  L L  +  + G+
Sbjct: 408 SACCYRGNIDKALDLQQRMHKYGI 431



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 162/368 (44%), Gaps = 42/368 (11%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P   ++N++++    +     A +V   + E  +  +   Y T+I    K G ++A F
Sbjct: 11  PPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF 70

Query: 148 --------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----------- 188
                     +KP+ + +N L++   ++G +     +L EM ++    D           
Sbjct: 71  RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 130

Query: 189 -----------------PDHITIG-----ALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
                             + +TIG      L+      G+V  A EV + +    +  T 
Sbjct: 131 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 190

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
            +Y   IN   QTG+ E A S +  M  + + PD +  +ALI+    A ++  A ++L E
Sbjct: 191 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME 250

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            ++ G++  + ++++L+ A       +K   +   M+   LKP V +  +++ A C   +
Sbjct: 251 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 310

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +P+ + +L DM    + PN   Y+ ++ A       +   +L+ + K +G+ P++V +  
Sbjct: 311 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 370

Query: 407 II-GMCSR 413
           +I G+C++
Sbjct: 371 LIKGLCNQ 378



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 131/311 (42%), Gaps = 52/311 (16%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    + G +         M+ + +      Y+A    +CK+++         ++ 
Sbjct: 193 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 252

Query: 88  PN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV- 143
            N   PT+ TFN L+     +   E  F VL  +QE GLK +   Y +++    K+GK+ 
Sbjct: 253 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 312

Query: 144 ------DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE------------- 183
                 D MF ++V P+  V+NA+I A  + G  D+AF ++ +M +              
Sbjct: 313 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLI 372

Query: 184 --------------------VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
                                H + PD ++   L+ AC   G +D+A ++ + +HKY IK
Sbjct: 373 KGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIK 432

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAA-- 280
            T   Y   I+     G       +Y  M +  V+P     + +++ ++ +  +++A   
Sbjct: 433 STVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDL 492

Query: 281 -FEILQEAKNQ 290
             E+LQ+  N 
Sbjct: 493 RKEMLQKRNNH 503



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 79/361 (21%), Positives = 150/361 (41%), Gaps = 30/361 (8%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+  +   ++     AG+   A EV+  + +  +      Y   I+   + GD E    +
Sbjct: 13  PNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRL 72

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            D M   G+ P+ +  + L+     AG++     +L E  +Q +     +YS L    S 
Sbjct: 73  RDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 132

Query: 309 AKNWQKALELYEHMKSIKLKPTVS--TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
             + +  L L+   K +K   T+   T + L+  LC   ++    EVL  + + GL P  
Sbjct: 133 NGDSKAMLSLFG--KYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 190

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL--- 421
           + Y+ L+    +  ++E       Q K   + P+ + +  +I G+C + R   A+ L   
Sbjct: 191 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME 250

Query: 422 ------NEHVLSFNS-----GRP-QIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
                 N  V +FN+     GR  Q+E  +  L+ M     +    +    +V+      
Sbjct: 251 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEM-QENGLKPNVVSYGSIVNAFCKNG 309

Query: 470 QLPYNADIRERLVENLGVSADALKRSNLC-SLIDGFGEYDP--RAFSLLEEAASFGIVPC 526
           ++P    I + +        D L  + +  ++ID + E+ P  +AF L+E+  S GI P 
Sbjct: 310 KIPEAVAILDDMFH-----KDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPS 364

Query: 527 V 527
           +
Sbjct: 365 I 365


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 142/327 (43%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P    FN+LM           A  V   + + GL+     + TLI+ C K+G V+  F  
Sbjct: 140 PNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRL 199

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E V PD   F+ALI    + G +D    +  EM  +   + P+ +T   L+   
Sbjct: 200 KGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGK--GLVPNGVTFTVLIDGQ 257

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+VD A + ++M+    ++     Y   IN   + GD + A  + ++M+  G+ PD 
Sbjct: 258 CKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDR 317

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + LID     G +E+A EI +    +GI +  ++++ L+           A  +   
Sbjct: 318 ITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRD 377

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S   KP   T   ++   C    +    ++L +M+S G  P  +TY+ L+    ++  
Sbjct: 378 MLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQ 437

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           V+   MLL      GV PN + +  ++
Sbjct: 438 VKNAKMLLDAMLNVGVAPNDITYNILL 464



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 9/196 (4%)

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
           W F   V D     G  P+  F + L+      G V +A  +  E   +G+   ++S+++
Sbjct: 127 WAFYLEVLD----SGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNT 182

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+  C  A   ++   L   M+S ++ P V T +ALI  LC   +L +   +  +M   G
Sbjct: 183 LISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKG 242

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKA 418
           L PN +T+++L+    +   V++ L         GV P+LV +  +I G+C      E  
Sbjct: 243 LVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEAR 302

Query: 419 RTLNEHVLSFNSGRPQ 434
           R +NE  +S +  RP 
Sbjct: 303 RLVNE--MSASGLRPD 316



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 118/284 (41%), Gaps = 52/284 (18%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----P 88
           N L ++GR+ E   L ++M  KGL+     +       CK  K +  A + F+++     
Sbjct: 220 NGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGK-VDLALKNFQMMLAQGV 278

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            P L T+N L++      D + A +++  +  +GL+ D   +TTLI  C K G +++   
Sbjct: 279 RPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALE 338

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMK 199
                  E ++ D V F  LI+   + G V  A  +L +M +A   P DP          
Sbjct: 339 IKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDP---------- 388

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                                        YT+ ++C  + G+      +  +M   G +P
Sbjct: 389 ----------------------------TYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVP 420

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
             V  +AL++     G+V+ A  +L    N G++   I+Y+ L+
Sbjct: 421 GVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILL 464



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 96/215 (44%), Gaps = 40/215 (18%)

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---- 303
           V+D++ K+G+ P  V  + LI     AG VE  F +    +++ +   + ++S+L+    
Sbjct: 164 VFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLC 223

Query: 304 --------------------------------GACSNAKNWQKALELYEHMKSIKLKPTV 331
                                           G C   K    AL+ ++ M +  ++P +
Sbjct: 224 KEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGK-VDLALKNFQMMLAQGVRPDL 282

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T NALI  LC    L +   ++++M + GL P+ IT++ L+  C +  D+E  L +  +
Sbjct: 283 VTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRR 342

Query: 392 AKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNE 423
             E+G+  + V F  +I G+C   R ++  R L +
Sbjct: 343 MVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRD 377



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 29/235 (12%)

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           ++E ++    E  + G       ++ LM           A  +++ +    L+PTV + N
Sbjct: 122 ELERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFN 181

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI+  C    + +   +   M+S  +CP+  T+S L+    ++  ++ G +L  +    
Sbjct: 182 TLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGK 241

Query: 396 GVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAG 454
           G++PN V F  +I G C                   G+         LAL  ++  +  G
Sbjct: 242 GLVPNGVTFTVLIDGQCK-----------------GGK-------VDLALKNFQMMLAQG 277

Query: 455 TIPTVEVVSKVLGCLQLPYNADIRE--RLVENLGVSADALKRSNLCSLIDGFGEY 507
             P +   + ++    L    D++E  RLV  +  S     R    +LIDG  +Y
Sbjct: 278 VRPDLVTYNALIN--GLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKY 330


>gi|298712181|emb|CBJ33053.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 845

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 121/269 (44%), Gaps = 19/269 (7%)

Query: 71  CKSQKAIKEAFRFFKLVPN------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           C   KA  E     K + +      P L   +  +     + + E A +VL  ++ AG+K
Sbjct: 155 CGQGKAALEVLERMKTIGDEAGGLKPDLHCLSAAIDAAGGAGEWEAALRVLDDLRAAGIK 214

Query: 125 ADCKLYTTLITTCAKSGKVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFD 175
            D  +Y   IT C    K++   +         +V  D   FNA ITACG+     RA  
Sbjct: 215 PDSFVYRAAITACGNGDKLEMALQLLRDMREDPDVPVDVASFNAAITACGRCKQWQRAIS 274

Query: 176 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
           +L E+  E   + P  ++ GA + ACA   Q D A E+ + +    I     VYT  I+ 
Sbjct: 275 LLREITTE--GLAPGLVSYGAAITACATCNQGDAAVELLRELPIVGITPDSMVYTSVISA 332

Query: 236 CSQTGDWEFACSVYDD--MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           C + G WE A  ++ +  M + G  PD V  SA+I   G  G+ E A   L+E    G+ 
Sbjct: 333 CGRAGQWERAVDLFREISMLRVGFRPDAVSYSAVITALGEGGQWEEALRFLREMPQAGVK 392

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHM 322
             ++ ++S + AC+ +  W++A  L   M
Sbjct: 393 PDVVCFNSAVTACAKSGRWEEAGGLLREM 421



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 123/281 (43%), Gaps = 25/281 (8%)

Query: 79  EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           E  RFF   PN  ++TFN  M    S+ +   A  +LR +    +  +   YT+ I  C 
Sbjct: 509 ETGRFFYCRPN--VATFNAAMQAAGSAGEWREALTLLRGMLAEKIAPNATSYTSAIAACG 566

Query: 139 KSGKVDAMFENVKPDRV--------VFNALITACGQSGAVDRAFDVLAEMNAEVH----- 185
            +G+ +     ++  +          +NA I ACG++G  + A  +L EM A+V      
Sbjct: 567 FAGEWEQALNLLRALKKGEGKLGVGAYNAAIKACGEAGRFEEAVGILREMEADVGLEIPS 626

Query: 186 ------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
                    PD  T  A + AC  AG+  RA  + + +    I  +   Y  A+  C ++
Sbjct: 627 SSTTRTTSRPDVTTYTAAIAACGRAGEYRRAVLLLREMPTVGITPSGISYNAAMTACGRS 686

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVG 295
           G WE + S+  +M K GV PD V  ++++   G AG+ E A  +L E    G    +   
Sbjct: 687 GQWELSLSLLREMAKLGVSPDVVSFNSVMSALGDAGEWERAVGLLGEISGSGGGDAVRPD 746

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
            +S+++ + AC  A     A  L     S+ L P   + +A
Sbjct: 747 YVSFATAIRACEMAGRLDDAAGLRAEAASLGLLPAGESGDA 787



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 136/318 (42%), Gaps = 51/318 (16%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLV-----QEAGLKADCKLYTTLITTCAKSGKV 143
            P ++T + +++ C      + A +VL  +     +  GLK D    +  I     +G+ 
Sbjct: 139 TPNVNTMSAVITACGRCGQGKAALEVLERMKTIGDEAGGLKPDLHCLSAAIDAAGGAGEW 198

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +A            +KPD  V+ A ITACG    ++ A  +L +M       DPD     
Sbjct: 199 EAALRVLDDLRAAGIKPDSFVYRAAITACGNGDKLEMALQLLRDMRE-----DPDV---- 249

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
                      VD A                  +  AI  C +   W+ A S+  ++T +
Sbjct: 250 ----------PVDVAS-----------------FNAAITACGRCKQWQRAISLLREITTE 282

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G+ P  V   A I       + +AA E+L+E    GI+   + Y+S++ AC  A  W++A
Sbjct: 283 GLAPGLVSYGAAITACATCNQGDAAVELLRELPIVGITPDSMVYTSVISACGRAGQWERA 342

Query: 316 LELYEH--MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           ++L+    M  +  +P   + +A+ITAL +G Q  + +  L +M   G+ P+ + ++  +
Sbjct: 343 VDLFREISMLRVGFRPDAVSYSAVITALGEGGQWEEALRFLREMPQAGVKPDVVCFNSAV 402

Query: 374 VACERKDDVEVGLMLLSQ 391
            AC +    E    LL +
Sbjct: 403 TACAKSGRWEEAGGLLRE 420



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 125/270 (46%), Gaps = 19/270 (7%)

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
           F   +P+   FNA + A G +G    A  +L  M AE   + P+  +  + + AC  AG+
Sbjct: 513 FFYCRPNVATFNAAMQAAGSAGEWREALTLLRGMLAE--KIAPNATSYTSAIAACGFAGE 570

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM-------------T 253
            ++A  + + + K   K     Y  AI  C + G +E A  +  +M             T
Sbjct: 571 WEQALNLLRALKKGEGKLGVGAYNAAIKACGEAGRFEEAVGILREMEADVGLEIPSSSTT 630

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +    PD    +A I   G AG+   A  +L+E    GI+   ISY++ M AC  +  W+
Sbjct: 631 RTTSRPDVTTYTAAIAACGRAGEYRRAVLLLREMPTVGITPSGISYNAAMTACGRSGQWE 690

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG----LCPNTITY 369
            +L L   M  + + P V + N++++AL D  +  + + +L ++   G    + P+ +++
Sbjct: 691 LSLSLLREMAKLGVSPDVVSFNSVMSALGDAGEWERAVGLLGEISGSGGGDAVRPDYVSF 750

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIP 399
           +  + ACE    ++    L ++A   G++P
Sbjct: 751 ATAIRACEMAGRLDDAAGLRAEAASLGLLP 780



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 102/221 (46%), Gaps = 14/221 (6%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPNPTL----STFNMLM 99
           + +L+D+   G+     VY A     C +   ++ A +  + +  +P +    ++FN  +
Sbjct: 202 LRVLDDLRAAGIKPDSFVYRA-AITACGNGDKLEMALQLLRDMREDPDVPVDVASFNAAI 260

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVK 151
           + C   K  + A  +LR +   GL      Y   IT CA   + DA  E         + 
Sbjct: 261 TACGRCKQWQRAISLLREITTEGLAPGLVSYGAAITACATCNQGDAAVELLRELPIVGIT 320

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           PD +V+ ++I+ACG++G  +RA D+  E++       PD ++  A++ A    GQ + A 
Sbjct: 321 PDSMVYTSVISACGRAGQWERAVDLFREISMLRVGFRPDAVSYSAVITALGEGGQWEEAL 380

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              + + +  +K     +  A+  C+++G WE A  +  +M
Sbjct: 381 RFLREMPQAGVKPDVVCFNSAVTACAKSGRWEEAGGLLREM 421



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 92/194 (47%), Gaps = 13/194 (6%)

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            +  A+      G+W  A ++   M  + + P+    ++ I   G AG+ E A  +L+  
Sbjct: 522 TFNAAMQAAGSAGEWREALTLLRGMLAEKIAPNATSYTSAIAACGFAGEWEQALNLLRAL 581

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS-------------IKLKPTVSTM 334
           K     +G+ +Y++ + AC  A  +++A+ +   M++                +P V+T 
Sbjct: 582 KKGEGKLGVGAYNAAIKACGEAGRFEEAVGILREMEADVGLEIPSSSTTRTTSRPDVTTY 641

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            A I A     +  + + +L +M ++G+ P+ I+Y+  + AC R    E+ L LL +  +
Sbjct: 642 TAAIAACGRAGEYRRAVLLLREMPTVGITPSGISYNAAMTACGRSGQWELSLSLLREMAK 701

Query: 395 DGVIPNLVMFKCII 408
            GV P++V F  ++
Sbjct: 702 LGVSPDVVSFNSVM 715



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 126/317 (39%), Gaps = 55/317 (17%)

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+    +A +  AG AG+   A  +L+    + I+    SY+S + AC  A  W++AL L
Sbjct: 518 PNVATFNAAMQAAGSAGEWREALTLLRGMLAEKIAPNATSYTSAIAACGFAGEWEQALNL 577

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGL------------CPN 365
              +K  + K  V   NA I A  +  +  + + +L +M++ +GL             P+
Sbjct: 578 LRALKKGEGKLGVGAYNAAIKACGEAGRFEEAVGILREMEADVGLEIPSSSTTRTTSRPD 637

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
             TY+  + AC R  +    ++LL +    G+ P+ + +   +  C R            
Sbjct: 638 VTTYTAAIAACGRAGEYRRAVLLLREMPTVGITPSGISYNAAMTACGR------------ 685

Query: 426 LSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 485
                       +W  L+L + RE    G  P V   + V+  L    +A   ER V  L
Sbjct: 686 ----------SGQW-ELSLSLLREMAKLGVSPDVVSFNSVMSALG---DAGEWERAVGLL 731

Query: 486 G----------VSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIP-- 533
           G          V  D +  +      +  G  D  A  L  EAAS G++P     +    
Sbjct: 732 GEISGSGGGDAVRPDYVSFATAIRACEMAGRLDD-AAGLRAEAASLGLLPAGESGDAAGL 790

Query: 534 ---VVVDARKLEIHTAK 547
              + VDA + E+ T +
Sbjct: 791 SSGLTVDANEGEVVTTR 807



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 118/267 (44%), Gaps = 26/267 (9%)

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-----LKPTVSTMNALIT 339
           +E     ++  + + S+++ AC      + ALE+ E MK+I      LKP +  ++A I 
Sbjct: 131 EEGGGGELTPNVNTMSAVITACGRCGQGKAALEVLERMKTIGDEAGGLKPDLHCLSAAID 190

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
           A     +    + VL D+++ G+ P++  Y   + AC   D +E+ L LL   +ED  +P
Sbjct: 191 AAGGAGEWEAALRVLDDLRAAGIKPDSFVYRAAITACGNGDKLEMALQLLRDMREDPDVP 250

Query: 400 -NLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSL-----------ALM 445
            ++  F   I  C R  ++++A +L   + +     P + +   ++           A+ 
Sbjct: 251 VDVASFNAAITACGRCKQWQRAISLLREITTEGLA-PGLVSYGAAITACATCNQGDAAVE 309

Query: 446 VYREAIVAGTIPTVEVVSKVLGCL----QLPYNADI-RERLVENLGVSADALKRSNLCSL 500
           + RE  + G  P   V + V+       Q     D+ RE  +  +G   DA+  S + + 
Sbjct: 310 LLRELPIVGITPDSMVYTSVISACGRAGQWERAVDLFREISMLRVGFRPDAVSYSAVITA 369

Query: 501 IDGFGEYDPRAFSLLEEAASFGIVPCV 527
           +   G+++  A   L E    G+ P V
Sbjct: 370 LGEGGQWE-EALRFLREMPQAGVKPDV 395


>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
 gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
          Length = 554

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 187/410 (45%), Gaps = 25/410 (6%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H +     +YN L+    R GR+ E   LL++M  + ++     Y   F  + ++  +  
Sbjct: 127 HGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKA 186

Query: 79  EAFRFFKLVPNP-TLSTFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
               F K + N  T+  +    +L  +C   K S  A +VL+ +  AGL     +Y TLI
Sbjct: 187 MLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSI-AEEVLQSLVNAGLVPTRVIYNTLI 245

Query: 135 TTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               ++G+++  F         ++KPD + +NALI    ++  +  A D+L EM  + + 
Sbjct: 246 NGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEM--QDNG 303

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           V+P   T   L+ A    GQ+++   V   + +  +K     Y   +N   + G    A 
Sbjct: 304 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 363

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           ++ DDM  K V+P+    +A+ID     G  + AF ++++ K+ GIS  I++Y+ L+   
Sbjct: 364 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 423

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            N     +A E+   + + +L P   + N LI+A C    + K +++   M   G+    
Sbjct: 424 CNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTV 483

Query: 367 ITYSIL---LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            TY  L   L    R +++E    L  +  ++ V+P+  +   ++   S+
Sbjct: 484 RTYHQLISGLGGAGRLNEMEY---LYQKMMQNNVVPSNAIHNIMVEAYSK 530



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 178/395 (45%), Gaps = 21/395 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAF 81
           +YN +I    + G +     L + M   GL      Y+     +C++ +     A+ +  
Sbjct: 100 TYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 159

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K+VP+    T+++L    + + DS+    +     + G+       + L+    K G
Sbjct: 160 ASQKMVPDGF--TYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDG 217

Query: 142 KVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           KV    E ++        P RV++N LI    Q+G ++ AF    +M +    + PDHIT
Sbjct: 218 KVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSR--HIKPDHIT 275

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+     A ++  A+++   +    +  T E +   I+   +TG  E    V  +M 
Sbjct: 276 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 335

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + G+ P+ V   ++++     GK+  A  IL +  ++ +      Y++++ A        
Sbjct: 336 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 395

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A  L E MKS  + P++ T N LI  LC+  Q+ +  E+++ + +  L P+ ++Y+ L+
Sbjct: 396 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 455

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            AC  + +++  L L  +  + G+   +  +  +I
Sbjct: 456 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLI 490



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 162/368 (44%), Gaps = 42/368 (11%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P   ++N++++    +     A +V   + E  +  +   Y T+I    K G ++A F
Sbjct: 59  PPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF 118

Query: 148 --------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----------- 188
                     +KP+ + +N L++   ++G +     +L EM ++    D           
Sbjct: 119 RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 178

Query: 189 -----------------PDHITIG-----ALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
                             + +TIG      L+      G+V  A EV + +    +  T 
Sbjct: 179 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 238

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
            +Y   IN   QTG+ E A S +  M  + + PD +  +ALI+    A ++  A ++L E
Sbjct: 239 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME 298

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            ++ G++  + ++++L+ A       +K   +   M+   LKP V +  +++ A C   +
Sbjct: 299 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 358

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +P+ + +L DM    + PN   Y+ ++ A       +   +L+ + K +G+ P++V +  
Sbjct: 359 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 418

Query: 407 II-GMCSR 413
           +I G+C++
Sbjct: 419 LIKGLCNQ 426



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 131/311 (42%), Gaps = 52/311 (16%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    + G +         M+ + +      Y+A    +CK+++         ++ 
Sbjct: 241 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 300

Query: 88  PN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV- 143
            N   PT+ TFN L+     +   E  F VL  +QE GLK +   Y +++    K+GK+ 
Sbjct: 301 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 360

Query: 144 ------DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE------------- 183
                 D MF ++V P+  V+NA+I A  + G  D+AF ++ +M +              
Sbjct: 361 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLI 420

Query: 184 --------------------VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
                                H + PD ++   L+ AC   G +D+A ++ + +HKY IK
Sbjct: 421 KGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIK 480

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAA-- 280
            T   Y   I+     G       +Y  M +  V+P     + +++ ++ +  +++A   
Sbjct: 481 STVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDL 540

Query: 281 -FEILQEAKNQ 290
             E+LQ+  N 
Sbjct: 541 RKEMLQKRNNH 551



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 124/327 (37%), Gaps = 69/327 (21%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP------------------------ 186
           +PD   +N  + AC  +G +  A  +L  M  +  P                        
Sbjct: 24  RPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAV 83

Query: 187 ----------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
                     V P+HIT   ++      G ++    +   +  + +K     Y + ++  
Sbjct: 84  EVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGL 143

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            + G      ++ D+M  + ++PD    S L D     G  +A   +  +    G+++G 
Sbjct: 144 CRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGD 203

Query: 297 ISYSSLM-GACSNAK----------------------------------NWQKALELYEH 321
            + S L+ G C + K                                    + A   +  
Sbjct: 204 YTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQ 263

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MKS  +KP   T NALI  LC  +++    ++L +M+  G+ P   T++ L+ A  R   
Sbjct: 264 MKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQ 323

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +E   ++LS+ +E+G+ PN+V +  I+
Sbjct: 324 LEKCFIVLSEMQENGLKPNVVSYGSIV 350


>gi|299473702|emb|CBN78095.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 537

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 149/313 (47%), Gaps = 11/313 (3%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENVKPDRVVFN-----AL 160
           E A + L   +  G+  +  +Y + I+  +K+G+     +M + ++ D + F+     ++
Sbjct: 112 EDATRALVGARVRGVPVNVYMYNSAISAVSKAGRWKEAMSMMKQMEKDGIAFDEFTYSSV 171

Query: 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220
           I ACG+ G   +A ++L EM  +VH + PD I  GA ++AC +AG  + A  + + + + 
Sbjct: 172 IVACGRGGQPRKALELLDEM-VQVHGIAPDMICYGAAIQACGDAGLTEEALSLMEKMSRE 230

Query: 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
            +      Y  AI  C + G WE A ++  +M  KG+ PD+      +      G+ E A
Sbjct: 231 GLLPDKTAYNSAIIACGEKGQWEKALNLLGEMRSKGLRPDQNSYRFAMQACSTGGRWERA 290

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
            ++L E +  G +  + ++ + + A  +A  W+KA++L   M  + + P+     A I A
Sbjct: 291 LQLLHEMEEDGSTPDVAAFQTALDALKDAAQWEKAMDLISEMDELGVPPSEGCFAAAIAA 350

Query: 341 LCD-GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
             + G+ LP +      M   GL P   TY  ++ AC    +  + L  L   ++ G   
Sbjct: 351 CAEVGEWLPAST-ARKLMGYYGLQPELETYKSIIKACLVGKEFNMALTTLFDLQKSGRRA 409

Query: 400 NLVMFKCIIGMCS 412
           +   +  +I +C+
Sbjct: 410 DQETWDMLIEICA 422



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 129/291 (44%), Gaps = 11/291 (3%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAMF 147
           +N  +S  + +   + A  +++ +++ G+  D   Y+++I  C + G+       +D M 
Sbjct: 133 YNSAISAVSKAGRWKEAMSMMKQMEKDGIAFDEFTYSSVIVACGRGGQPRKALELLDEMV 192

Query: 148 E--NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           +   + PD + + A I ACG +G  + A  ++ +M+ E   + PD     + + AC   G
Sbjct: 193 QVHGIAPDMICYGAAIQACGDAGLTEEALSLMEKMSRE--GLLPDKTAYNSAIIACGEKG 250

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           Q ++A  +   +    ++     Y  A+  CS  G WE A  +  +M + G  PD     
Sbjct: 251 QWEKALNLLGEMRSKGLRPDQNSYRFAMQACSTGGRWERALQLLHEMEEDGSTPDVAAFQ 310

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
             +D    A + E A +++ E    G+      +++ + AC+    W  A    + M   
Sbjct: 311 TALDALKDAAQWEKAMDLISEMDELGVPPSEGCFAAAIAACAEVGEWLPASTARKLMGYY 370

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            L+P + T  ++I A   G +    +  L D++  G   +  T+ +L+  C
Sbjct: 371 GLQPELETYKSIIKACLVGKEFNMALTTLFDLQKSGRRADQETWDMLIEIC 421



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 135/312 (43%), Gaps = 22/312 (7%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVL-R 116
           +Y++    V K+ +  KEA    K +    ++    T++ ++  C        A ++L  
Sbjct: 132 MYNSAISAVSKAGR-WKEAMSMMKQMEKDGIAFDEFTYSSVIVACGRGGQPRKALELLDE 190

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSG 168
           +VQ  G+  D   Y   I  C  +G  +           E + PD+  +N+ I ACG+ G
Sbjct: 191 MVQVHGIAPDMICYGAAIQACGDAGLTEEALSLMEKMSREGLLPDKTAYNSAIIACGEKG 250

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE 227
             ++A ++L EM ++   + PD  +    M+AC+  G+ +RA    +++H+    G TP+
Sbjct: 251 QWEKALNLLGEMRSK--GLRPDQNSYRFAMQACSTGGRWERA---LQLLHEMEEDGSTPD 305

Query: 228 V--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
           V  +  A++       WE A  +  +M + GV P E   +A I      G+   A    +
Sbjct: 306 VAAFQTALDALKDAAQWEKAMDLISEMDELGVPPSEGCFAAAIAACAEVGEWLPASTARK 365

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
                G+   + +Y S++ AC   K +  AL     ++    +    T + LI       
Sbjct: 366 LMGYYGLQPELETYKSIIKACLVGKEFNMALTTLFDLQKSGRRADQETWDMLIEICAVVG 425

Query: 346 QLPKTMEVLSDM 357
           +    +E++ D+
Sbjct: 426 KWDAALEIIRDI 437



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 4/201 (1%)

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           Q G WE A         +GV  +    ++ I     AG+ + A  ++++ +  GI+    
Sbjct: 107 QRGQWEDATRALVGARVRGVPVNVYMYNSAISAVSKAGRWKEAMSMMKQMEKDGIAFDEF 166

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           +YSS++ AC      +KALEL + M  +  + P +    A I A  D     + + ++  
Sbjct: 167 TYSSVIVACGRGGQPRKALELLDEMVQVHGIAPDMICYGAAIQACGDAGLTEEALSLMEK 226

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--R 414
           M   GL P+   Y+  ++AC  K   E  L LL + +  G+ P+   ++  +  CS   R
Sbjct: 227 MSREGLLPDKTAYNSAIIACGEKGQWEKALNLLGEMRSKGLRPDQNSYRFAMQACSTGGR 286

Query: 415 YEKARTLNEHVLSFNSGRPQI 435
           +E+A  L  H +  +   P +
Sbjct: 287 WERALQLL-HEMEEDGSTPDV 306



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 1/152 (0%)

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
           G  G+ E A   L  A+ +G+ V +  Y+S + A S A  W++A+ + + M+   +    
Sbjct: 106 GQRGQWEDATRALVGARVRGVPVNVYMYNSAISAVSKAGRWKEAMSMMKQMEKDGIAFDE 165

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSILLVACERKDDVEVGLMLLS 390
            T +++I A   G Q  K +E+L +M  + G+ P+ I Y   + AC      E  L L+ 
Sbjct: 166 FTYSSVIVACGRGGQPRKALELLDEMVQVHGIAPDMICYGAAIQACGDAGLTEEALSLME 225

Query: 391 QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
           +   +G++P+   +   I  C  + +  + LN
Sbjct: 226 KMSREGLLPDKTAYNSAIIACGEKGQWEKALN 257



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/310 (19%), Positives = 114/310 (36%), Gaps = 55/310 (17%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           ++ YN  I    + GR  E + +++ ME+ G+   D+  ++     C      ++A    
Sbjct: 130 VYMYNSAISAVSKAGRWKEAMSMMKQMEKDGIA-FDEFTYSSVIVACGRGGQPRKALELL 188

Query: 85  KLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             +       P +  +   +  C  +  +E A  ++  +   GL  D   Y + I  C +
Sbjct: 189 DEMVQVHGIAPDMICYGAAIQACGDAGLTEEALSLMEKMSREGLLPDKTAYNSAIIACGE 248

Query: 140 SGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            G+ +           + ++PD+  +   + AC   G  +RA  +L EM  E     PD 
Sbjct: 249 KGQWEKALNLLGEMRSKGLRPDQNSYRFAMQACSTGGRWERALQLLHEM--EEDGSTPDV 306

Query: 192 ITIGALMKACANAGQVDRAREV-----------------------------------YKM 216
                 + A  +A Q ++A ++                                    K+
Sbjct: 307 AAFQTALDALKDAAQWEKAMDLISEMDELGVPPSEGCFAAAIAACAEVGEWLPASTARKL 366

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           +  Y ++   E Y   I  C    ++  A +   D+ K G   D+     LI+     GK
Sbjct: 367 MGYYGLQPELETYKSIIKACLVGKEFNMALTTLFDLQKSGRRADQETWDMLIEICAVVGK 426

Query: 277 VEAAFEILQE 286
            +AA EI+++
Sbjct: 427 WDAALEIIRD 436


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 163/335 (48%), Gaps = 13/335 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF------ 147
           ++ +LM+      ++  A Q+LR   +  + AD  +Y+T+I +  K   V   +      
Sbjct: 117 SYAILMNGLCKMGETRAAMQMLR---KTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEM 173

Query: 148 --ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             + + P+   F+ L+ A  +     +A ++LA M  +   V P+ +T GA+M       
Sbjct: 174 IAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKK--GVKPNVVTYGAIMDGYCLVN 231

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           QV++A  ++ ++ +  ++     Y I IN   +    + A +++ +M  K + PD V  +
Sbjct: 232 QVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYN 291

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LID     GK+  + E++ E ++ G +V II+Y+SL+ A     +  +A+ L + +K  
Sbjct: 292 ILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQ 351

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            ++P V T   LI  LC   +L     +  ++ + G      TY++++    +K   +  
Sbjct: 352 GIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEA 411

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 420
           L LLS+ +++  IP+ V ++ II   S + E  +T
Sbjct: 412 LALLSRMEDNACIPDAVSYETIIYALSEKGETVKT 446



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/389 (21%), Positives = 160/389 (41%), Gaps = 48/389 (12%)

Query: 83  FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             ++ P P +  FN +++          A  + R ++  G+K      T L+     +G 
Sbjct: 1   MLQISPTPPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGG 60

Query: 143 VDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +  +F           +P+ + F  LI     +G    A  +L   +   H    D ++ 
Sbjct: 61  ITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEA--LLFHDHVVAHGFKLDQVSY 118

Query: 195 GALMKACANAGQVDRAREV-----------------------------YKMIHKYNIKGT 225
             LM      G+   A ++                             Y++  +   KG 
Sbjct: 119 AILMNGLCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGI 178

Query: 226 -PEVYTIAI----NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
            P VYT +I     C  + G  + A ++   M KKGV P+ V   A++D      +V  A
Sbjct: 179 FPNVYTFSILVDALCKDRKG--KQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKA 236

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
             I      +G+   +  Y+ ++      K   +A+ L++ M   K+ P V T N LI  
Sbjct: 237 LNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDG 296

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           LC   ++  ++E++ +M+S+G   + ITY+ LL A  +   ++  + L+ + K+ G+ PN
Sbjct: 297 LCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPN 356

Query: 401 LVMFKCII-GMCSR-RYEKARTLNEHVLS 427
           +  +  +I G+C   R E A  + + +L+
Sbjct: 357 VCTYTTLIDGLCKDGRLEDAYVIFQEILT 385



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 66/334 (19%), Positives = 142/334 (42%), Gaps = 35/334 (10%)

Query: 51  MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---PTLSTFNMLMSVCASSK 106
           M RK  ++ D V ++   +     K + +A+R + +++     P + TF++L+      +
Sbjct: 137 MLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDR 196

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQ 166
             + A  +L ++ + G                           VKP+ V + A++     
Sbjct: 197 KGKQAMNLLAMMMKKG---------------------------VKPNVVTYGAIMDGYCL 229

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
              V++A ++   M  E   V+P+      ++       +VD A  ++K +H   I    
Sbjct: 230 VNQVNKALNIFNVMVQE--GVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDV 287

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             Y I I+   + G    +  + D+M   G   D +  ++L+        ++ A  +++E
Sbjct: 288 VTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKE 347

Query: 287 AKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
            K+QGI   + +Y++L+ G C + +  + A  +++ + +     TV T N +I  LC   
Sbjct: 348 IKDQGIQPNVCTYTTLIDGLCKDGR-LEDAYVIFQEILTEGYHITVWTYNVMINGLCKKG 406

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
              + + +LS M+     P+ ++Y  ++ A   K
Sbjct: 407 LFDEALALLSRMEDNACIPDAVSYETIIYALSEK 440



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/269 (20%), Positives = 111/269 (41%), Gaps = 17/269 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R+G+  + ++LL  M +KG+      Y A     C   + + +A   F ++      P +
Sbjct: 196 RKGK--QAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQ-VNKALNIFNVMVQEGVEPNV 252

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP 152
             +N++++     K  + A  + + +    +  D   Y  LI    K GK+    E V  
Sbjct: 253 WCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDE 312

Query: 153 --------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                   D + +N+L+ A  ++  +D+A  ++ E+  +   + P+  T   L+      
Sbjct: 313 MRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQ--GIQPNVCTYTTLIDGLCKD 370

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G+++ A  +++ I       T   Y + IN   + G ++ A ++   M     IPD V  
Sbjct: 371 GRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSY 430

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGIS 293
             +I      G+     ++L     +G+S
Sbjct: 431 ETIIYALSEKGETVKTNKLLCAMIVRGLS 459


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 11/293 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P L  F  L+S   S   +E A+QVL  +   G   D  LYT+LI     +G+V     
Sbjct: 280 EPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARH 339

Query: 144 --DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             D+M E    PD + +  +I    + G V+ A ++L  M      V PD     +LM  
Sbjct: 340 VFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKS--GVGPDCFAYNSLMDG 397

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                +VD+A  VY  +    IK     + + ++   + G  + A S++ +M +K  +P 
Sbjct: 398 YVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPP 457

Query: 261 E-VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
             V  + LID  G AG+V  AF   QE  ++GI     +Y+SL+ + + A    +A +L 
Sbjct: 458 TLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLV 517

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           E M  + + P V   +ALIT L D   +    +V  +M   G  PN +TY +L
Sbjct: 518 EDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVL 570



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 102/457 (22%), Positives = 183/457 (40%), Gaps = 64/457 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L++ GRI + +   E+M     +     Y      +CK+Q                    
Sbjct: 153 LLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQ-------------------- 192

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--------M 146
             ML   C          +V   + + G   D   YTTLI   +K+ K+D         +
Sbjct: 193 --MLPDAC----------KVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 240

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
            +  +P  V + +++    +   ++ A +V+A+M       +P      +L+    + G 
Sbjct: 241 TKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRE--RGCEPGLFIFTSLLSYYLSKG- 297

Query: 207 VDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             RA E Y+++ +   +G  P+V  YT  I+    TG    A  V+D M +KG  PD + 
Sbjct: 298 --RAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALT 355

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
              +I      G VEAA EIL+     G+     +Y+SLM      +   +A  +Y+ M 
Sbjct: 356 YGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMV 415

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM-KSLGLCPNTITYSILLVACERKDDV 382
           +  +KP   T N L+  L    +  +   +  +M +   + P  ++Y+IL+    +   V
Sbjct: 416 ASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRV 475

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ------ 434
               +   +  + G+IP    +  +I   ++  R  +A+ L E ++      P       
Sbjct: 476 SEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGV-NPDVQAYSA 534

Query: 435 -----IENKWTSLALMVYREAIVAGTIPTVEVVSKVL 466
                I++     A  V++E +  G  P  EV  KVL
Sbjct: 535 LITGLIDSSMVDTAWDVFQEMMKRGCAPN-EVTYKVL 570



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/451 (20%), Positives = 199/451 (44%), Gaps = 47/451 (10%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------ 142
            PT+ ++N ++S  AS    + A++    + + G + D   +TTLI    K+G+      
Sbjct: 4   EPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHK 63

Query: 143 -VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            ++   +  +PD  ++ ++I    ++G +D  +       A       D I+   ++K  
Sbjct: 64  LLNQALKRFRPDVFLYTSVIHGYCKAGDLDTGY-----FRAVTPKASLDVISYTTVIKGL 118

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A++ ++D A E+++ +           YT  I+   + G  E     +++M+    +P  
Sbjct: 119 ADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTR 178

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + +ID    A  +  A ++ ++   +G     I+Y++L+   S A    +A +L + 
Sbjct: 179 TTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDV 238

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M +   +PT  T  +++   C  D + +  EV++ M+  G  P    ++ LL     K  
Sbjct: 239 MLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGR 298

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR-PQIENKWT 440
            E    +L++    G  P+++++  +I                 L F++GR P+  + + 
Sbjct: 299 AEEAYQVLTEMTARGCAPDVILYTSLID----------------LLFSTGRVPEARHVFD 342

Query: 441 SLALMVYR----EAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSN 496
           S   M+ +    +A+  GTI  ++  SK+     +    +I E + ++ GV  D    + 
Sbjct: 343 S---MIEKGCAPDALTYGTI--IQNFSKI---GNVEAAGEILELMAKS-GVGPDCFAYN- 392

Query: 497 LCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
             SL+DG+ + +   +AF + +   + GI P
Sbjct: 393 --SLMDGYVKLERVDQAFGVYDRMVASGIKP 421



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 101/485 (20%), Positives = 193/485 (39%), Gaps = 66/485 (13%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SY  +I+      RI E  +L E+++  G       Y A    + K+ + I++  + F+ 
Sbjct: 110 SYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGR-IEDGLKNFEE 168

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      PT +T+ +++     ++    A +V   + + G   D   YTTLI   +K+ K
Sbjct: 169 MSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASK 228

Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +D                           +  DV+     E     P  +T G+++    
Sbjct: 229 MDE------------------------ARKLLDVMLTKGPE-----PTAVTYGSIVHGFC 259

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
               ++ A+EV   + +   +    ++T  ++     G  E A  V  +MT +G  PD +
Sbjct: 260 KLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVI 319

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             ++LID     G+V  A  +      +G +   ++Y +++   S   N + A E+ E M
Sbjct: 320 LYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELM 379

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               + P     N+L+      +++ +   V   M + G+ PN +T+++L+    +    
Sbjct: 380 AKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKT 439

Query: 383 EVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 441
           +    L  +  E + V P LV +  +I    +                +GR        S
Sbjct: 440 DRAFSLFKEMLEKEEVPPTLVSYTILIDGLGK----------------AGR-------VS 476

Query: 442 LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN---LGVSADALKRSNLC 498
            A + ++E I  G IP     + ++  L         ++LVE+   LGV+ D    S L 
Sbjct: 477 EAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALI 536

Query: 499 S-LID 502
           + LID
Sbjct: 537 TGLID 541


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 179/419 (42%), Gaps = 22/419 (5%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR-- 66
           ++F    GK   Y H++   +   + L   G +     +    +  GL+    VY +   
Sbjct: 128 IRFFTWAGKQKKYTHNLECYVSLIDVLATNGVLDSVKSVFSKFKEMGLIM--TVYSSNSL 185

Query: 67  ---FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
              F N+   ++ +    R  +    P+L ++N L++   +SK  E A +V  +++   +
Sbjct: 186 IKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKI 245

Query: 124 KADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFD 175
             D   Y T+I    + GK    FE        NV PD++ +  LI AC   G  D    
Sbjct: 246 GPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLG 305

Query: 176 VLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
           +  EM+ +   + P    + IG L   C +  +V+       MI K   K    +YT  I
Sbjct: 306 LYHEMDEKGLEIPPHVYSLVIGGL---CKDGKRVEGYTVFENMISK-GCKANVAIYTALI 361

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           +  ++ G+   A  ++  M K+G+ PDEV    +++    +G+++ A E ++    +G++
Sbjct: 362 DSNAKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVA 421

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
           V  + YSSL+     +    +A  ++  M      P     NALI AL    ++ + + +
Sbjct: 422 VNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEALAL 481

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI-IGMC 411
              M+  G      TY+IL+    R+   E  L L     + G+ P    F+ +  G+C
Sbjct: 482 SKRMEVDGCDQTVYTYTILITGLFREHRNEEALTLWDLMIDKGITPTAAAFRALSTGLC 540



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 165/369 (44%), Gaps = 19/369 (5%)

Query: 25  VSEQLHSYNRLIR---QGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEA 80
           +   L SYN L+      +  E  + + ++   G +  D V Y+      C+  K  ++A
Sbjct: 210 IEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKT-RKA 268

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F   K +      P   T+  L+  C +  D +    +   + E GL+    +Y+ +I  
Sbjct: 269 FEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGG 328

Query: 137 CAKSGK-VDA--MFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K GK V+   +FEN+     K +  ++ ALI +  + G +  A  +   M  E   ++
Sbjct: 329 LCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKE--GLE 386

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD +T G ++ +   +G++D A E  +      +      Y+  I+   ++G  + A  +
Sbjct: 387 PDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERI 446

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           + +M KKG  PD    +ALID     GK++ A  + +  +  G    + +Y+ L+     
Sbjct: 447 FYEMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFR 506

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
               ++AL L++ M    + PT +   AL T LC   ++ +  ++L +M  +G+ P T  
Sbjct: 507 EHRNEEALTLWDLMIDKGITPTAAAFRALSTGLCLSGKVARACKILDEMAPMGVIPETAF 566

Query: 369 YSILLVACE 377
             ++ + C+
Sbjct: 567 DDMINILCK 575


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 108/465 (23%), Positives = 194/465 (41%), Gaps = 31/465 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGL---LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP- 90
           L + G++ E +  L  M   G    ++ D V H        +   +++A  +F  + +  
Sbjct: 191 LAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSL 250

Query: 91  --TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
             T  TFN L++    ++ +E A   ++ + E         YT+L+    K G++D    
Sbjct: 251 DLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALL 310

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            +K        PD V + ++I    + G V+   +   EM    +  +PD +T  AL+  
Sbjct: 311 QLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGY--EPDAVTYAALIDG 368

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              A  + +A  VY+ + +     +   Y I ++   + G    A + +  M ++G +  
Sbjct: 369 FMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVAT 428

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  SAL+D     G V AA E+ +   ++G    ++SY+ ++     A    KA   +E
Sbjct: 429 VVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFE 488

Query: 321 HMKSIKLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
            +   +L P V T N+ +  LC   D +   +E+   M S G  PN  +YSIL+    R 
Sbjct: 489 KLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGICRA 548

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFK------CIIGMCSRRYEKARTLNEHVLSFNSGRP 433
             +EV L +  +    GV P++V+F       CI G      E  R L           P
Sbjct: 549 GGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERR------SAP 602

Query: 434 QIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR 478
              + W+ L  +   E +    + +  +  K+ GC    Y+  +R
Sbjct: 603 DAWSYWSLLDALSRCERMEEARLLSFHM--KLQGCAPRHYDLTVR 645



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 181/423 (42%), Gaps = 31/423 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L +  R+ +   LL+ M+ K  L     Y A    + K+ + + EA    + +     +P
Sbjct: 86  LCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGR-LDEAMAILEQMVEKGNSP 144

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----- 145
           TL T+ +++   + +   E A ++   +   G + D  +YT LI+  AK GK+D      
Sbjct: 145 TLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYL 204

Query: 146 --MFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
             M EN     V+PD V+ N +I     SG ++ A     E++     +D  H T   L+
Sbjct: 205 NQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELD---DSLDLTHFTFNPLV 261

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
            A   A + + A    K + +     T   YT  ++   + G  + A     +  ++G I
Sbjct: 262 AALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFI 321

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD V  +++ID     G+VE   E   E +N+G     ++Y++L+     AK   KA  +
Sbjct: 322 PDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRV 381

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           Y  M       +  T N ++  LC   ++ +       M+  G     +TYS L+     
Sbjct: 382 YRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCS 441

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR--------RYEK--ARTLNEHVLS 427
           + +V   + L  +  + G  PNLV +  II G+C           +EK   R L   V +
Sbjct: 442 EGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYT 501

Query: 428 FNS 430
           FNS
Sbjct: 502 FNS 504



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 100/219 (45%), Gaps = 11/219 (5%)

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMT 253
           AL+      GQ+DRA     M+    +  +P++  +T+ IN   +    + A SV +   
Sbjct: 14  ALLNGLCKTGQLDRA-----MLLLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAV 68

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + G  PD V  +  ID    A +V+ AF++L++   +      ++Y++L+     A    
Sbjct: 69  RAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLD 128

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A+ + E M      PT+ T   +I  L    ++ +   +  DM   G  P+   Y+ L+
Sbjct: 129 EAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALI 188

Query: 374 VACERKDDVEVGLMLLSQAKED----GVIPNLVMFKCII 408
               +   ++  L+ L+Q  E+    GV P++V+   +I
Sbjct: 189 SGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVI 227



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 166/394 (42%), Gaps = 32/394 (8%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D  V  AL+    ++G +DRA  +L EM     P  PD +    ++       ++D A  
Sbjct: 8   DTRVCTALLNGLCKTGQLDRAMLLLDEM-----PCSPDMVAFTVVINGLCREKRLDEAFS 62

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           V +   +   +     Y + I+   +    + A  +   M +K  +P  V  +AL+D   
Sbjct: 63  VLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLL 122

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            AG+++ A  IL++   +G S  + +Y+ ++   S A   ++A  ++  M     +P   
Sbjct: 123 KAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAF 182

Query: 333 TMNALITALCDGDQLPKTMEVLSDMK----SLGLCPNTITYSILLVACERKDDVEVGLML 388
              ALI+ L    +L + +  L+ M     + G+ P+ + +++++       ++E  L  
Sbjct: 183 VYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAY 242

Query: 389 LSQAKEDGVIPNLVMFKCIIGMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSL----- 442
             +  +   + +      +  +C + R E+A    +  +S     P +   +TSL     
Sbjct: 243 FDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKK-MSERRCFPTLFT-YTSLVDGFL 300

Query: 443 -------ALMVYREAIVAGTIP-TVEVVSKVLGCLQLPYNADIRERLVE--NLGVSADAL 492
                  AL+  +EA+  G IP  V   S + G  +L    +  ER  E  N G   DA+
Sbjct: 301 KLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAV 360

Query: 493 KRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIV 524
             +   +LIDGF   +  P+A  +  +    G V
Sbjct: 361 TYA---ALIDGFMKAKMIPKAHRVYRQMLQSGTV 391


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 148/328 (45%), Gaps = 13/328 (3%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC---AKSGKVDAMFENV-- 150
           ++L   C + +  E    +L    E G   D   Y+ L+ +     KSG+ D +   +  
Sbjct: 151 HLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAE 210

Query: 151 -----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                 PD V +N +I    + G V++A D+  EM     P  PD +T  +++ A   A 
Sbjct: 211 GGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIP--PDFVTYSSVVHALCKAR 268

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +D+A    + +    +      Y   I   S TG W+ A  V+ +M ++ ++PD V  +
Sbjct: 269 AMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFN 328

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+      GK++ A ++      +G +  + SY+ ++   +         +L++ M   
Sbjct: 329 MLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD 388

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + P + T N LI A  +   L K M + ++M+  G+ PN +TY+ ++ A  R   ++  
Sbjct: 389 GIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDA 448

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCS 412
           +   +Q  + GV P+   + C+I G C+
Sbjct: 449 MEKFNQMIDQGVAPDKYAYHCLIQGFCT 476



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 187/417 (44%), Gaps = 24/417 (5%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN +I    ++G +++  DL ++M ++G+      Y +    +CK+ +A+ +A 
Sbjct: 216 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKA-RAMDKAE 274

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
            F + + N    P   T+N L+   +S+   + A +V + ++   +  D   +  L+ + 
Sbjct: 275 AFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSL 334

Query: 138 AKSGKV-------DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            K GK+       D M  +   PD   +N ++      G +    D+   M  +   + P
Sbjct: 335 CKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD--GIAP 392

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
              T   L+KA AN G +D+A  ++  +  + +K     YT  I    + G  + A   +
Sbjct: 393 VICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKF 452

Query: 250 DDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           + M  +GV PD+     LI  F  H G +  A E++ E  N G+ + I+ +SS++     
Sbjct: 453 NQMIDQGVAPDKYAYHCLIQGFCTH-GSLLKAKELISEIMNNGMHLDIVLFSSIINNLCK 511

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                 A  +++   ++ L PT    + L+   C   ++ K + V   M S G+ PN + 
Sbjct: 512 LGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVV 571

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
           Y  L+    +   ++ GL L  +  + G+ P+ +++  II      +E  RT+   V
Sbjct: 572 YGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIII---DGLFEAGRTVPAKV 625



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/411 (20%), Positives = 176/411 (42%), Gaps = 46/411 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+I E  D+ + M  KG  + D   +    N   ++  + +    F L+      P
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQ-NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 392

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN- 149
            + TFN+L+   A+    + A  +   +++ G+K +   YTT+I    + GK+D   E  
Sbjct: 393 VICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKF 452

Query: 150 -------VKPDRVVFNALITACGQSGAVDRAFDVLAE-MNAEVH---------------- 185
                  V PD+  ++ LI      G++ +A ++++E MN  +H                
Sbjct: 453 NQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKL 512

Query: 186 ----------------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
                            + P  +    LM      G++++A  V+  +    I+    VY
Sbjct: 513 GRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVY 572

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
              +N   + G  +   S++ +M +KG+ P  +  + +ID    AG+   A     E   
Sbjct: 573 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTE 632

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            GI++   +YS ++      + + +A+ L++ ++++ +K  + T+N +I  +    ++ +
Sbjct: 633 SGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEE 692

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
             ++ + +   GL P  +TYSI++    ++  VE    + S  +  G  P+
Sbjct: 693 AKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPD 743


>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 404

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 140/309 (45%), Gaps = 19/309 (6%)

Query: 124 KADCKLYTTLITTCAKSGKVD---AMFE--------NVKPDRVVFNALITACGQSGAVDR 172
           +AD   YT L+    K+   +   A+F         N +P+ V  NALI A  + G  D+
Sbjct: 78  QADQYTYTALVNAYGKAKMFEEALAVFSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQ 137

Query: 173 AFDVLAEM----NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN----IKG 224
           A  V  +M    N   H  +P+ IT   L+ A    G +D   +V + +   N    ++ 
Sbjct: 138 AIQVFFDMRDGTNGLEHGCEPNVITYNVLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQP 197

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
               Y   IN C + G +E A  + D M + GV PD +  +ALID  G AG  E A    
Sbjct: 198 NSATYNTLINACGKGGLYEKAEELVDLMVEHGVQPDHITYTALIDAYGKAGLWENAENTF 257

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
           +  K   +SV +++Y++++ A      +QKA E+++ M+   L+P   T  +L+ A    
Sbjct: 258 KGMKGTNVSVDVMAYTAMIDAYGREGLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKA 317

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
               ++  V + M+  G   N + YS L+ A  +  +      +L   +  G  PNL+ +
Sbjct: 318 GLPEESRNVFNIMRESGYEGNVLIYSSLIDAYGKAGNYLEAARMLDMMRRAGCQPNLITY 377

Query: 405 KCIIGMCSR 413
             I+  C +
Sbjct: 378 SAILSSCCK 386



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 160/362 (44%), Gaps = 38/362 (10%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLD---MDKVYHARFFNVCKSQKAIKEAFRFF 84
           Y RLI    R+GR+     L ++M    LL+    D+  +    N     K  +EA   F
Sbjct: 49  YTRLIGFLGREGRVHNATLLFQEM----LLEKCQADQYTYTALVNAYGKAKMFEEALAVF 104

Query: 85  KLV-----PN--PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA--GLKADCK----LYT 131
             +     PN  P   T N L+         + A QV   +++   GL+  C+     Y 
Sbjct: 105 SHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNGLEHGCEPNVITYN 164

Query: 132 TLITTCAKSGKVDAMF------------ENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
            LI    K G +D               ++V+P+   +N LI ACG+ G  ++A + L +
Sbjct: 165 VLIDALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKA-EELVD 223

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
           +  E H V PDHIT  AL+ A   AG  + A   +K +   N+      YT  I+   + 
Sbjct: 224 LMVE-HGVQPDHITYTALIDAYGKAGLWENAENTFKGMKGTNVSVDVMAYTAMIDAYGRE 282

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G ++ A  ++  M   G+ P++V   +L++  G AG  E +  +    +  G    ++ Y
Sbjct: 283 GLYQKAEEMFKMMQHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIMRESGYEGNVLIY 342

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           SSL+ A   A N+ +A  + + M+    +P + T +A++++ C  +   +   +L  ++ 
Sbjct: 343 SSLIDAYGKAGNYLEAARMLDMMRRAGCQPNLITYSAILSSCCKSNCWVEAQVLLRRLQV 402

Query: 360 LG 361
            G
Sbjct: 403 FG 404



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 93/198 (46%), Gaps = 18/198 (9%)

Query: 241 DWEFACSVYDDMTKKG-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           DW     V+    K+    P+    + LI F G  G+V  A  + QE   +       +Y
Sbjct: 25  DWRCTLEVFSWSKKQSWYCPNSRLYTRLIGFLGREGRVHNATLLFQEMLLEKCQADQYTY 84

Query: 300 SSLMGACSNAKNWQKALELYEHMKSI---KLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           ++L+ A   AK +++AL ++ HMK       +P   T NALI AL  G    + ++V  D
Sbjct: 85  TALVNAYGKAKMFEEALAVFSHMKESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFD 144

Query: 357 MK------SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-----VIPNLVMFK 405
           M+        G  PN ITY++L+ A  ++  +++G+ +L Q   DG     V PN   + 
Sbjct: 145 MRDGTNGLEHGCEPNVITYNVLIDALCKEGLLDIGMKVL-QYMRDGNTDQSVQPNSATYN 203

Query: 406 CIIGMCSRR--YEKARTL 421
            +I  C +   YEKA  L
Sbjct: 204 TLINACGKGGLYEKAEEL 221



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 13/194 (6%)

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE---AAFEIL 284
           +YT  I    + G    A  ++ +M  +    D+   +AL++  G A   E   A F  +
Sbjct: 48  LYTRLIGFLGREGRVHNATLLFQEMLLEKCQADQYTYTALVNAYGKAKMFEEALAVFSHM 107

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK------LKPTVSTMNALI 338
           +E+         ++ ++L+ A      + +A++++  M+          +P V T N LI
Sbjct: 108 KESNEPNCQPNTVTCNALIDALVKGGLYDQAIQVFFDMRDGTNGLEHGCEPNVITYNVLI 167

Query: 339 TALCDGDQLPKTMEVLSDMK----SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            ALC    L   M+VL  M+       + PN+ TY+ L+ AC +    E    L+    E
Sbjct: 168 DALCKEGLLDIGMKVLQYMRDGNTDQSVQPNSATYNTLINACGKGGLYEKAEELVDLMVE 227

Query: 395 DGVIPNLVMFKCII 408
            GV P+ + +  +I
Sbjct: 228 HGVQPDHITYTALI 241


>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
          Length = 691

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 187/410 (45%), Gaps = 25/410 (6%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H +     +YN L+    R GR+ E   LL++M  + ++     Y   F  + ++  +  
Sbjct: 264 HGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKA 323

Query: 79  EAFRFFKLVPNP-TLSTFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
               F K + N  T+  +    +L  +C   K S  A +VL+ +  AGL     +Y TLI
Sbjct: 324 MLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSI-AEEVLQSLVNAGLVPTRVIYNTLI 382

Query: 135 TTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               ++G+++  F         ++KPD + +NALI    ++  +  A D+L EM  + + 
Sbjct: 383 NGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEM--QDNG 440

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           V+P   T   L+ A    GQ+++   V   + +  +K     Y   +N   + G    A 
Sbjct: 441 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 500

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           ++ DDM  K V+P+    +A+ID     G  + AF ++++ K+ GIS  I++Y+ L+   
Sbjct: 501 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 560

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            N     +A E+   + + +L P   + N LI+A C    + K +++   M   G+    
Sbjct: 561 CNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTV 620

Query: 367 ITYSIL---LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            TY  L   L    R +++E    L  +  ++ V+P+  +   ++   S+
Sbjct: 621 RTYHQLISGLGGAGRLNEMEY---LYQKMMQNNVVPSNAIHNIMVEAYSK 667



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 178/395 (45%), Gaps = 21/395 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAF 81
           +YN +I    + G +     L + M   GL      Y+     +C++ +     A+ +  
Sbjct: 237 TYNTMIDGHIKGGDLEAGFRLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 296

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K+VP+    T+++L    + + DS+    +     + G+       + L+    K G
Sbjct: 297 ASQKMVPDGF--TYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDG 354

Query: 142 KVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           KV    E ++        P RV++N LI    Q+G ++ AF    +M +    + PDHIT
Sbjct: 355 KVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSR--HIKPDHIT 412

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+     A ++  A+++   +    +  T E +   I+   +TG  E    V  +M 
Sbjct: 413 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 472

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + G+ P+ V   ++++     GK+  A  IL +  ++ +      Y++++ A        
Sbjct: 473 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 532

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A  L E MKS  + P++ T N LI  LC+  Q+ +  E+++ + +  L P+ ++Y+ L+
Sbjct: 533 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 592

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            AC  + +++  L L  +  + G+   +  +  +I
Sbjct: 593 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLI 627



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 162/368 (44%), Gaps = 42/368 (11%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P   ++N++++    +     A +V   + E  +  +   Y T+I    K G ++A F
Sbjct: 196 PPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF 255

Query: 148 --------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----------- 188
                     +KP+ + +N L++   ++G +     +L EM ++    D           
Sbjct: 256 RLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 315

Query: 189 -----------------PDHITIG-----ALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
                             + +TIG      L+      G+V  A EV + +    +  T 
Sbjct: 316 SRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 375

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
            +Y   IN   QTG+ E A S +  M  + + PD +  +ALI+    A ++  A ++L E
Sbjct: 376 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME 435

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            ++ G++  + ++++L+ A       +K   +   M+   LKP V +  +++ A C   +
Sbjct: 436 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 495

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +P+ + +L DM    + PN   Y+ ++ A       +   +L+ + K +G+ P++V +  
Sbjct: 496 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 555

Query: 407 II-GMCSR 413
           +I G+C++
Sbjct: 556 LIKGLCNQ 563



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 149/365 (40%), Gaps = 46/365 (12%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
           P P+LS+ N+L+    S        +   ++  AG + D   +   +  C  +G +    
Sbjct: 125 PLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAV 184

Query: 144 ---------------------------------------DAMFEN-VKPDRVVFNALITA 163
                                                  D M E  V P+ + +N +I  
Sbjct: 185 GMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDG 244

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
             + G ++  F +  +M    H + P+ IT   L+     AG++     +   +    + 
Sbjct: 245 HIKGGDLEAGFRLRDQM--VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMV 302

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                Y+I  +  S+ GD +   S++    K GV   +   S L++     GKV  A E+
Sbjct: 303 PDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 362

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           LQ   N G+    + Y++L+         + A   +  MKS  +KP   T NALI  LC 
Sbjct: 363 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 422

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
            +++    ++L +M+  G+ P   T++ L+ A  R   +E   ++LS+ +E+G+ PN+V 
Sbjct: 423 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 482

Query: 404 FKCII 408
           +  I+
Sbjct: 483 YGSIV 487



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 131/311 (42%), Gaps = 52/311 (16%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    + G +         M+ + +      Y+A    +CK+++         ++ 
Sbjct: 378 YNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQ 437

Query: 88  PN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV- 143
            N   PT+ TFN L+     +   E  F VL  +QE GLK +   Y +++    K+GK+ 
Sbjct: 438 DNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIP 497

Query: 144 ------DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE------------- 183
                 D MF ++V P+  V+NA+I A  + G  D+AF ++ +M +              
Sbjct: 498 EAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLI 557

Query: 184 --------------------VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
                                H + PD ++   L+ AC   G +D+A ++ + +HKY IK
Sbjct: 558 KGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIK 617

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAA-- 280
            T   Y   I+     G       +Y  M +  V+P     + +++ ++ +  +++A   
Sbjct: 618 STVRTYHQLISGLGGAGRLNEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDL 677

Query: 281 -FEILQEAKNQ 290
             E+LQ+  N 
Sbjct: 678 RKEMLQKRNNH 688


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 115/528 (21%), Positives = 213/528 (40%), Gaps = 60/528 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P+L TFN ++++       + A  V   + +  L  D   YT+LI    ++ K+D  FE 
Sbjct: 195 PSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEV 254

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                     P+ V ++ LI      G +  A D+L EM  +   ++P   T    + + 
Sbjct: 255 FDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEK--GIEPTVYTYTVPISSL 312

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            + G+VD A  + + + K     + + YT  I+   + G  E A  +Y  M K+G++P+ 
Sbjct: 313 CDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNT 372

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  +ALI+     G+   A +I    +  G      +Y+ ++       + +KA+ ++  
Sbjct: 373 VTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNK 432

Query: 322 MKSIKLKPTVSTMNALI-----------------------------------TALCDGDQ 346
           M      PTV T N LI                                   +  C G +
Sbjct: 433 MLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGK 492

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           L        +M   G+ PN  TY+ ++    ++  ++V L L  + +E+G   ++  +  
Sbjct: 493 LDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNA 552

Query: 407 IIGMCSR--RYEKA---------RTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAG 454
           II   S+  R+ +A         + L  + +++ S    + +N  T+LA  ++ E     
Sbjct: 553 IISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKN 612

Query: 455 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSL 514
            +P     + ++  L      D  ERL EN G        S L S +   G  +  A  L
Sbjct: 613 CLPNAHTYTSLIYGLCQEGKVDAAERLTEN-GCEPTIDTYSTLVSGLCREGRSN-EASQL 670

Query: 515 LEEAASFGIVPCVSFKEIPVVVDARKLEIHTA-KVYLLTILKGLRHRL 561
           +E     G+ P +      +V   + L++  A +++ L  +KG +  L
Sbjct: 671 VENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHL 718



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 175/421 (41%), Gaps = 38/421 (9%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFF 68
           LQF Y   K   Y HD+   +   NRL++                K L   D   H R  
Sbjct: 88  LQFFYWISKRHFYKHDMGCFVSMLNRLVKD---------------KILAPAD---HVRIL 129

Query: 69  NV--CKSQKAIKEAFRFFKLVPNP-------TLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
            +  C+++  +K    F   + +        TL +FN L+           A  V   + 
Sbjct: 130 MIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNTLLLQLGKFDMVTSAQNVYAQIF 189

Query: 120 EAGLKADCKLYTTLITTCAKSGKV-------DAMFE-NVKPDRVVFNALITACGQSGAVD 171
            +G+K     + T+I    K GKV       + +F+ ++ PD   + +LI    ++  +D
Sbjct: 190 SSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLD 249

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
           +AF+V   M  +    +P+ +T   L+    N G++  A ++ + + +  I+ T   YT+
Sbjct: 250 KAFEVFDRMVKD--GCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTV 307

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            I+     G  + A ++   M KKG  P     +A+I     AGK+E A  +  +   +G
Sbjct: 308 PISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEG 367

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           +    ++Y++L+        +  AL++++ M+         T N +I  L   D + K M
Sbjct: 368 LVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAM 427

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF-KCIIGM 410
            V + M   G  P  +TY+ L+V   ++  +      L   KE    P+   + + I G 
Sbjct: 428 VVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGF 487

Query: 411 C 411
           C
Sbjct: 488 C 488



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 95/407 (23%), Positives = 178/407 (43%), Gaps = 23/407 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTLS 93
           L R G++   I +   M ++GL+     Y+A    +C ++     A + F  +  + TL+
Sbjct: 347 LFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELC-TEGRFGIALKIFDWMEGHGTLA 405

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD------ 144
              T+N ++       D E A  V   + + G       Y TLI    K G ++      
Sbjct: 406 NAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFL 465

Query: 145 -AMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
             M E N +PD   +  LI+   + G +D A     EM      + P+  T  A++    
Sbjct: 466 YMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLK--CGISPNQWTYTAMIDGYC 523

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G++D A  +++ + +     + E Y   I+  S+   +  A      MT++G+ P+ +
Sbjct: 524 KEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTI 583

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEH 321
             ++LI+          AF+I  E + +       +Y+SL+ G C   K     ++  E 
Sbjct: 584 TYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGK-----VDAAER 638

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +     +PT+ T + L++ LC   +  +  +++ +MK  GL P+   Y  LLVA  +   
Sbjct: 639 LTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLK 698

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVL 426
           V+  L + +     G  P+L ++K +I  +C   R E+A  + + +L
Sbjct: 699 VDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLL 745



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/406 (21%), Positives = 169/406 (41%), Gaps = 19/406 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAFRFFKLVPN 89
           N L  +GRI E +D+LE+M  KG+      Y     ++C   +   AI       K   +
Sbjct: 275 NGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCS 334

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P++ T+  ++S    +   E A  +   + + GL  +   Y  LI      G+      +
Sbjct: 335 PSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKI 394

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F+ ++      +   +N +I        +++A  V  +M  +     P  +T   L+   
Sbjct: 395 FDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKD--GPSPTVVTYNTLIVEN 452

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G ++ A     M+ + N +     Y   I+   + G  + A S + +M K G+ P++
Sbjct: 453 LKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQ 512

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              +A+ID     GK++ A  + +  +  G S  I +Y++++   S    + +A +    
Sbjct: 513 WTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAK 572

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    L+P   T  +LI  LC         ++  +M+     PN  TY+ L+    ++  
Sbjct: 573 MTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGK 632

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
           V+       +  E+G  P +  +  ++ G+C   R  +A  L E++
Sbjct: 633 VDAA----ERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENM 674



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 82/411 (19%), Positives = 164/411 (39%), Gaps = 44/411 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRFFKLVPN 89
           N L  +GR    + + + ME  G L   + Y+      F +   +KA+    +  K  P+
Sbjct: 380 NELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPS 439

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           PT+ T+N L+           A + L +++E+  + D + Y  LI+   K GK+D+    
Sbjct: 440 PTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSF 499

Query: 146 MFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            +E +K    P++  + A+I    + G +D A  +   M  E +       T  A++   
Sbjct: 500 FYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERM--EENGCSASIETYNAIISGL 557

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           +   +   A +    + +  ++     YT  IN   +      A  ++ +M KK  +P+ 
Sbjct: 558 SKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNA 617

Query: 262 VFLSALIDFAGHAGKVEAA-------------------------------FEILQEAKNQ 290
              ++LI      GKV+AA                                ++++  K +
Sbjct: 618 HTYTSLIYGLCQEGKVDAAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEK 677

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G+S  +  Y SL+ A   +     ALE++  M     +P +     LI ALC   +  + 
Sbjct: 678 GLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEA 737

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
           + +   +       + I +++L+    ++ D ++ +  L   +     P+L
Sbjct: 738 LNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSL 788



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/358 (20%), Positives = 144/358 (40%), Gaps = 23/358 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    ++G ++     L  M+       ++ Y       CK  K       F+++
Sbjct: 444 TYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEM 503

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +    +P   T+  ++         + A  +   ++E G  A  + Y  +I+  +K  + 
Sbjct: 504 LKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRF 563

Query: 144 D-------AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                    M E  ++P+ + + +LI    ++ A + AF +  EM  E     P+  T  
Sbjct: 564 SEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEM--EKKNCLPNAHTYT 621

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+      G+VD A      + +   + T + Y+  ++   + G    A  + ++M +K
Sbjct: 622 SLIYGLCQEGKVDAAER----LTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEK 677

Query: 256 GVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           G+ P  E++ S L+     + KV+ A EI      +G    +  Y  L+ A       ++
Sbjct: 678 GLSPSMEIYCSLLVAHC-KSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEE 736

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           AL +++ +   +    +     L+  L         M+ L  M+S    P+  TY IL
Sbjct: 737 ALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIIL 794


>gi|218197756|gb|EEC80183.1| hypothetical protein OsI_22045 [Oryza sativa Indica Group]
          Length = 577

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 140/300 (46%), Gaps = 18/300 (6%)

Query: 89  NPTLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-- 144
            P L +FN L++  A S    +  A ++L  V++AGL+ D   Y TLI+ C++   +D  
Sbjct: 26  EPDLVSFNTLINARAKSGCLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDA 85

Query: 145 -AMFENV-----KPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            A+FE +     +PD   +NA+++    CG++   +  F  L E   +     PD +T  
Sbjct: 86  VAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAELMFKELVEKGFQ-----PDAVTYN 140

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+ A A  G V+R   V + + K   +     Y   I+   + G  + A  +YD+M   
Sbjct: 141 SLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAI 200

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  PD V  + L+D  G   ++  A ++L+E  + G+   ++++S+L+ A + +     A
Sbjct: 201 GCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDA 260

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
              ++ M    +KP       ++      D+  K M +   M   G  P+   Y +LL A
Sbjct: 261 ERTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAA 320



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/297 (26%), Positives = 139/297 (46%), Gaps = 18/297 (6%)

Query: 138 AKSGK-------VDAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP--V 187
           A+SG+       +DAM  ++++PD V FN LI A  +SG +  A  V  E+  EV    +
Sbjct: 5   ARSGRFDDARQLLDAMRDQDIEPDLVSFNTLINARAKSGCL--AAGVALELLHEVRQAGL 62

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            PD IT   L+ AC+    +D A  V++ +     +     Y   ++   + G  + A  
Sbjct: 63  RPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWTYNAMVSVHGRCGKAQEAEL 122

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           ++ ++ +KG  PD V  ++L+      G VE    + +E    G     I+Y++++    
Sbjct: 123 MFKELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYG 182

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                  AL LY+ M++I   P   T   L+ +L   D++ +  +VL +M   GL P  +
Sbjct: 183 KMGRLDLALGLYDEMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLV 242

Query: 368 TYSILLVA---CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
           T+S L+ A     R+DD E       +  E GV P+ + +  ++ + +R  E  + +
Sbjct: 243 TFSALICAYAKSGRQDDAE---RTFDRMVESGVKPDRLAYLVMLDVFARSDETRKLM 296


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 142/327 (43%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P++ T+++LM      +D E    +LR ++  G+K +   YT  I    ++ + D  +  
Sbjct: 318 PSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRI 377

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E  KPD +    LI     +G +  A DV  +M        PD +T   L+   
Sbjct: 378 LAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQ--KPDRVTYITLLDKF 435

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            + G      E++  +           YT  I+   Q G    A  ++D+M +KG++P++
Sbjct: 436 GDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQ 495

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++LI     A +   A E+ +     G      ++   +     +    KA++ YE 
Sbjct: 496 YSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYEL 555

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MKS  + P V   NA++  L    +L     V  ++K++G+ P+TITY++++  C +   
Sbjct: 556 MKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASK 615

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
            +  + +     E+  +P+++    +I
Sbjct: 616 FDEAVKIFYDMIENNCVPDVLAVNSLI 642



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 163/379 (43%), Gaps = 25/379 (6%)

Query: 47  LLEDMERKGLLDMDKVYHARF-FNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSV 101
           LL +ME  G+     VY       V    K   EA+R    + N    P + T  +L+ V
Sbjct: 342 LLREMEAHGV--KPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQV 399

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG------------KVDAMFEN 149
              +     A  V   ++++  K D   Y TL+     +G            K D   +N
Sbjct: 400 LCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDN 459

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V    V + A+I A  Q G V  A ++  EM  +   + P+  +  +L+     A +   
Sbjct: 460 V----VAYTAVIDALCQVGRVFEALEMFDEMKQK--GIVPEQYSYNSLISGFLKADRFGD 513

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A E++K +  +  K     + + IN   ++G+   A   Y+ M  KG++PD V  +A++ 
Sbjct: 514 ALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLF 573

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
               +G++  A  +  E K  G+S   I+Y+ ++  CS A  + +A++++  M      P
Sbjct: 574 GLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVP 633

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            V  +N+LI  L    +  +   +   +K + L P   TY+ LL    R+  V+  + LL
Sbjct: 634 DVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLL 693

Query: 390 SQAKEDGVIPNLVMFKCII 408
            +       PNL+ +  I+
Sbjct: 694 EEMYHSNYPPNLITYNTIL 712



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/436 (19%), Positives = 174/436 (39%), Gaps = 51/436 (11%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AH V   ++SY   IR      R  E   +L  ME +G    D + H     V      I
Sbjct: 348 AHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGC-KPDVITHTVLIQVLCDAGRI 406

Query: 78  KEA----FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A    ++  K    P   T+  L+     + DS+   ++   ++  G   +   YT +
Sbjct: 407 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 466

Query: 134 ITTCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEM----- 180
           I    + G+V     MF+ +K     P++  +N+LI+   ++     A ++   M     
Sbjct: 467 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGP 526

Query: 181 --NAEVH--------------------------PVDPDHITIGALMKACANAGQVDRARE 212
             N   H                           + PD +   A++   A +G++  A+ 
Sbjct: 527 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 586

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           V+  +    +      YT+ I CCS+   ++ A  ++ DM +   +PD + +++LID   
Sbjct: 587 VFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLY 646

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            AG+ + A+ I  + K   +     +Y++L+         ++ + L E M      P + 
Sbjct: 647 KAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 706

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N ++  LC    +   +++L  M + G  P+  +Y+ ++    +++       +  Q 
Sbjct: 707 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 766

Query: 393 KEDGVIPNLVMFKCII 408
           K+  +IP+      I+
Sbjct: 767 KKV-LIPDYATLCTIL 781



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 104/504 (20%), Positives = 194/504 (38%), Gaps = 70/504 (13%)

Query: 18   HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
            H+NY  +    L +YN ++    + G +++ +D+L  M  KG +     Y+   + + K 
Sbjct: 698  HSNYPPN----LITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 753

Query: 74   QKAIKEAFRFF-----KLVPN--------PTLSTFNMLMSVCASSKDS------------ 108
            ++   EAF  F      L+P+        P+     ++       KD             
Sbjct: 754  ER-YNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSS 812

Query: 109  --------------EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDR 154
                          E + +   ++  +G+  D      LI    K  K     E VK  +
Sbjct: 813  CHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFK 872

Query: 155  V--------VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
                     ++N+LI        +D A  + AEM        PD  T   L+ A   + +
Sbjct: 873  SFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKE--LGCGPDEFTYNLLLDAMGKSMR 930

Query: 207  VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            ++   +V + +H+   + T   Y   I+   ++   E A  +Y ++  +G  P       
Sbjct: 931  IEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGP 990

Query: 267  LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
            L+D    AG++E A  +  E    G       Y+ L+     A N +K   L++ M    
Sbjct: 991  LLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQG 1050

Query: 327  LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
            + P + +   +I  LC   QL   +     +  +GL P+ ITY++L+    +   +E  +
Sbjct: 1051 INPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAV 1110

Query: 387  MLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNE--------HVLSFNSG-RPQ 434
             L ++ ++ G++PNL  +  +I   G   +  E  +   E        +V ++N+  R  
Sbjct: 1111 SLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGY 1170

Query: 435  IENKWTSLALMVYREAIVAGTIPT 458
              +  T  A   Y   IV G +P 
Sbjct: 1171 SVSGSTDSAYAAYGRMIVGGCLPN 1194



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 158/378 (41%), Gaps = 46/378 (12%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           K   Y  +V       + L + GR+ E +++ ++M++KG++     Y++      K+ + 
Sbjct: 452 KADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADR- 510

Query: 77  IKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
             +A   FK +    P P   T  + ++    S +S  A Q   L++  G          
Sbjct: 511 FGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG---------- 560

Query: 133 LITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
                            + PD V  NA++    +SG +  A  V  E+ A    V PD I
Sbjct: 561 -----------------IVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKA--MGVSPDTI 601

Query: 193 TIGALMKACANAGQVDRAREV-YKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVY 249
           T   ++K C+ A + D A ++ Y MI    +   P+V  +   I+   + G  + A  ++
Sbjct: 602 TYTMMIKCCSKASKFDEAVKIFYDMIENNCV---PDVLAVNSLIDTLYKAGRGDEAWRIF 658

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
             + +  + P +   + L+   G  GKV+    +L+E  +      +I+Y++++      
Sbjct: 659 YQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKN 718

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
                AL++   M +    P +S+ N +I  L   ++  +   +   MK + L P+  T 
Sbjct: 719 GAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPDYATL 777

Query: 370 SILLVACERKDDVEVGLM 387
             +L +      V++GLM
Sbjct: 778 CTILPSF-----VKIGLM 790



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 109/276 (39%), Gaps = 2/276 (0%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
            +N L+    +SG    A +V   M   V  V P   T   LM A      V+    + +
Sbjct: 287 TYNGLVYFLVKSGFDREALEVYRVM--MVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLR 344

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            +  + +K     YTI I    Q   ++ A  +   M  +G  PD +  + LI     AG
Sbjct: 345 EMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAG 404

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           ++  A ++  + K        ++Y +L+    +  + Q  +E++  MK+      V    
Sbjct: 405 RISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYT 464

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
           A+I ALC   ++ + +E+  +MK  G+ P   +Y+ L+    + D     L L       
Sbjct: 465 AVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIH 524

Query: 396 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 431
           G  PN       I    +  E  + +  + L  + G
Sbjct: 525 GPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG 560



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
           ++  L+   G  G +   F+++Q    Q +   + +++++ G        + A      M
Sbjct: 220 YMLELMRGHGRVGDMAEVFDVMQR---QIVKANVGTFAAIFGGLGVEGGLRSAPVALPVM 276

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           K   +     T N L+  L       + +EV   M   G+ P+  TYS+L+VA  ++ DV
Sbjct: 277 KEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDV 336

Query: 383 EVGLMLLSQAKEDGVIPNLVMFK-CI--IGMCSRRYEKARTL 421
           E  L LL + +  GV PN+  +  CI  +G   R  E  R L
Sbjct: 337 ETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRIL 378



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 1/174 (0%)

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G+V    EV+ ++ +  +K     +          G    A      M + G++ +    
Sbjct: 229 GRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTY 288

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + L+ F   +G    A E+ +     G+   + +YS LM A    ++ +  L L   M++
Sbjct: 289 NGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEA 348

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACE 377
             +KP V +    I  L    +  +   +L+ M++ G  P+ IT+++L+ V C+
Sbjct: 349 HGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCD 402


>gi|299115398|emb|CBN74228.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1882

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 147/328 (44%), Gaps = 38/328 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           P L+ +N  +S  + S   + A  +L  ++ AG++ D + +T++++  ++SG+VD     
Sbjct: 244 PNLAVYNAAISAVSRSGKWDEALGLLEEMRSAGVQPDVRTFTSVVSAGSRSGRVDLAERV 303

Query: 145 ---AMFENVKPDRVVFNALITACGQSGA-----------VDRAFDVLAEMNAEVHP-VDP 189
                 E V P+   +NA+IT C                V+RA  +L EM A+  P   P
Sbjct: 304 LDTMRAEGVPPNAATYNAVITGCSCGPPPPPRGGSGGGEVERALRLLEEMAADPRPEAQP 363

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----------- 238
           + ++   ++KAC   G+ + A ++   +    ++ T   +  A+  C+            
Sbjct: 364 EALSYTLVLKACGREGRWETALQLLTEMQAKGLEPTVLSFRYALTACASSSSSRGVSGGS 423

Query: 239 -----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
                 G WE   S+ D M + G+ PD +     +D A  AG V AA +++   +N    
Sbjct: 424 GEEDFAGVWERCRSLMDAMGRLGLEPDRLCYKQAVDAAAKAGDVGAALDLMDGMENCEGF 483

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
            G + Y+ ++ AC    +WQ+A+     ++     P   +    +TA     +  + + +
Sbjct: 484 RGAVEYNQIIMACGRRGDWQRAVSTLGRIRRAGGAPDAHSFAMAMTACARAGESRQALRL 543

Query: 354 LSDMK--SLGLCPNTITYSILLVACERK 379
           L ++K    G+ PNT+ Y+ LL  C  K
Sbjct: 544 LDELKREGGGVRPNTVVYNTLLALCRGK 571



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/304 (20%), Positives = 127/304 (41%), Gaps = 32/304 (10%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           ++ P+  V+NA I+A  +SG  D A  +L EM +    V PD  T  +++ A + +G+VD
Sbjct: 241 DLAPNLAVYNAAISAVSRSGKWDEALGLLEEMRS--AGVQPDVRTFTSVVSAGSRSGRVD 298

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-----------DWEFACSVYDDMT---K 254
            A  V   +    +      Y   I  CS              + E A  + ++M    +
Sbjct: 299 LAERVLDTMRAEGVPPNAATYNAVITGCSCGPPPPPRGGSGGGEVERALRLLEEMAADPR 358

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN------ 308
               P+ +  + ++   G  G+ E A ++L E + +G+   ++S+   + AC++      
Sbjct: 359 PEAQPEALSYTLVLKACGREGRWETALQLLTEMQAKGLEPTVLSFRYALTACASSSSSRG 418

Query: 309 ----------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
                     A  W++   L + M  + L+P        + A      +   ++++  M+
Sbjct: 419 VSGGSGEEDFAGVWERCRSLMDAMGRLGLEPDRLCYKQAVDAAAKAGDVGAALDLMDGME 478

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
           +       + Y+ +++AC R+ D +  +  L + +  G  P+   F   +  C+R  E  
Sbjct: 479 NCEGFRGAVEYNQIIMACGRRGDWQRAVSTLGRIRRAGGAPDAHSFAMAMTACARAGESR 538

Query: 419 RTLN 422
           + L 
Sbjct: 539 QALR 542



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/271 (20%), Positives = 109/271 (40%), Gaps = 39/271 (14%)

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY--------- 220
           V  A  +L EM        PD ++   +M+AC NAG+ + A +V++ + +          
Sbjct: 652 VGTAVALLHEMTVGGSECAPDKMSFELVMQACVNAGRPESALKVFRAMARVAAGGGGAVG 711

Query: 221 ------------------NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
                              ++     + + +   ++ GD   A  + ++M   G+  DE 
Sbjct: 712 GGGGGSGERRGGGRGRAVEVRPDRATFRLGLTAAAEAGDGPAAAVLLEEMRDAGIAMDES 771

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
                    G AG       +   A  QGI++   + +S++GAC+    W++AL L +  
Sbjct: 772 AFHLAATAFGRAGLWRQGVRVAVVAAEQGIALAPTTLTSILGACAKQARWREALGLLQGT 831

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           + + L+  +S++            L     V++  +  G       Y++ +VAC R    
Sbjct: 832 RPV-LQQGLSSL-----------PLSTGAGVVAGNERRGEGNVVAAYTLAMVACRRSGRH 879

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             GL +L   +EDG + +   F+  +  C++
Sbjct: 880 SEGLRVLEMLEEDGGVGDEAFFRVALKCCAK 910



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 92/426 (21%), Positives = 157/426 (36%), Gaps = 76/426 (17%)

Query: 47   LLEDMERKGLLDMDKVYH--ARFFNVCKSQK-----AIKEAFRFFKLVPNPTLSTFNMLM 99
            LLE+M   G+   +  +H  A  F      +     A+  A +   L P    +T   ++
Sbjct: 757  LLEEMRDAGIAMDESAFHLAATAFGRAGLWRQGVRVAVVAAEQGIALAP----TTLTSIL 812

Query: 100  SVCASS---KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVV 156
              CA     +++ G  Q  R V + GL       +  ++T A    V A  E      VV
Sbjct: 813  GACAKQARWREALGLLQGTRPVLQQGLS------SLPLSTGAG---VVAGNERRGEGNVV 863

Query: 157  --FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR----- 209
              +   + AC +SG       VL EM  E   V  D       +K CA AG V       
Sbjct: 864  AAYTLAMVACRRSGRHSEGLRVL-EMLEEDGGVG-DEAFFRVALKCCAKAGGVGERGDCS 921

Query: 210  ----AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
                A  V + +    I+   E +T         G WE A ++         +PDE    
Sbjct: 922  GAAVADRVLEGMSAQGIRCGVEGFTDIAQAYGLAGRWEDALALLPRAAALAAVPDERMYC 981

Query: 266  ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG--------------------- 304
            ++I+  G +G  EAA E++Q  + +  S    +  S +G                     
Sbjct: 982  SVINAMGESGAWEAAVELIQSMRRRRPSAAATAGGSGVGTSDSGASGVAAAAVVSPSLEP 1041

Query: 305  -------------ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
                         AC+    W   L L E M+   L+   S   + + A  +     + +
Sbjct: 1042 PPPGRAAYGCACRACARKGEWGAVLGLIEDMREDGLERDSSVYASAMRAFVEAGDWERAV 1101

Query: 352  EVLS-DMKSLGLCPNTITYSILLVACERKDD-----VEVGLMLLSQAKEDGVIPNLVMFK 405
            E+++ +M+  G+ P+ +++   L AC    D      ++ L L+ + +  G+ P +V+ +
Sbjct: 1102 EIVTVEMERDGVSPDALSFGQALRACRAGADGSGRAAQLALALVGEVRSRGLEPGVVILE 1161

Query: 406  CIIGMC 411
                 C
Sbjct: 1162 SAARAC 1167



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 70/331 (21%), Positives = 123/331 (37%), Gaps = 77/331 (23%)

Query: 92   LSTFNMLMSVCA-SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
            ++ + + M  C  S + SEG  +VL +++E G   D   +   +  CAK+G V       
Sbjct: 863  VAAYTLAMVACRRSGRHSEG-LRVLEMLEEDGGVGDEAFFRVALKCCAKAGGVGERGDCS 921

Query: 144  -----DAMFENVK----------------------------------------PDRVVFN 158
                 D + E +                                         PD  ++ 
Sbjct: 922  GAAVADRVLEGMSAQGIRCGVEGFTDIAQAYGLAGRWEDALALLPRAAALAAVPDERMYC 981

Query: 159  ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 218
            ++I A G+SGA + A +++  M               A     +  G  D          
Sbjct: 982  SVINAMGESGAWEAAVELIQSMR--------RRRPSAAATAGGSGVGTSDSGASGVAAAA 1033

Query: 219  KYNIKGTP-----EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAG 272
              +    P       Y  A   C++ G+W     + +DM + G+  D  V+ SA+  F  
Sbjct: 1034 VVSPSLEPPPPGRAAYGCACRACARKGEWGAVLGLIEDMREDGLERDSSVYASAMRAFV- 1092

Query: 273  HAGKVEAAFEILQ-EAKNQGISVGIISYSSLMGAC-----SNAKNWQKALELYEHMKSIK 326
             AG  E A EI+  E +  G+S   +S+   + AC      + +  Q AL L   ++S  
Sbjct: 1093 EAGDWERAVEIVTVEMERDGVSPDALSFGQALRACRAGADGSGRAAQLALALVGEVRSRG 1152

Query: 327  LKPTVSTMNALITALCDGDQLPK-TMEVLSD 356
            L+P V  + +   A C  D  P+  ++++S+
Sbjct: 1153 LEPGVVILESAARA-CLADDRPELALDIVSE 1182



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 10/116 (8%)

Query: 303 MGACSNAKNWQKALELYEHMK----------SIKLKPTVSTMNALITALCDGDQLPKTME 352
           M A      W++A+ +   +K             L P ++  NA I+A+    +  + + 
Sbjct: 208 MKALGKEGKWREAVAVLSQLKEDASAASNGDGSDLAPNLAVYNAAISAVSRSGKWDEALG 267

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +L +M+S G+ P+  T++ ++ A  R   V++   +L   + +GV PN   +  +I
Sbjct: 268 LLEEMRSAGVQPDVRTFTSVVSAGSRSGRVDLAERVLDTMRAEGVPPNAATYNAVI 323


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 175/390 (44%), Gaps = 17/390 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK---SQKAIKEAFRFFKLVPNP 90
           L  +G+I + +   + +   G   ++KV +    N +CK   +  A++   R    +  P
Sbjct: 152 LCLKGQIHQALQFHDKVVALGF-HLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQP 210

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DA---- 145
            +  +N ++      K    AF +   +   G+  D   Y  LI+     GK+ DA    
Sbjct: 211 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLF 270

Query: 146 ---MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
              +FEN+ P+   FN L+    +   +  A +VLA M  +   + PD  T  +LM    
Sbjct: 271 NKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQ--GIKPDVFTYNSLMDRYC 328

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              +V++A+ ++  I +  +      Y+I I+   +    + A +++ +M    +IPD V
Sbjct: 329 LVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVV 388

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             ++LID     GK+  A +++ E  ++G+    I+Y+S++ A        KA+ L   M
Sbjct: 389 TYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKM 448

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           K   ++P + T   L+  LC   +L     V  D+   G   +   Y+ ++         
Sbjct: 449 KDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLF 508

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           +  L LLS+ +E+G IPN V ++ II  CS
Sbjct: 509 DESLDLLSKMEENGCIPNAVTYEIII--CS 536



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 187/411 (45%), Gaps = 27/411 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAFRFFKLVPN 89
           L++    S  + L   ME  G+   D V  +   N C SQ      +     +  K+   
Sbjct: 82  LVKSNHYSTVVSLHRQMEFNGITS-DLVILSILIN-CFSQLGQNPLSFSVLAKILKMGYE 139

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P + T   L+           A Q    V   G   +   Y TLI    K G+  A  + 
Sbjct: 140 PNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQL 199

Query: 150 --------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V+P+ V++N +I +  +   V+ AFD+ +EM ++   + PD +T  AL+   
Sbjct: 200 LRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSK--GISPDVVTYNALISGF 257

Query: 202 ANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAI---NCCSQTGDWEFACSVYDDMTKKGV 257
              G++  A +++ KMI + NI   P VYT  I     C +    E A +V   M K+G+
Sbjct: 258 CIVGKMKDATDLFNKMIFE-NI--NPNVYTFNILVDGFCKERRLKE-AKNVLAMMMKQGI 313

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD    ++L+D      +V  A  I      +G++  I SYS ++      K   +A+ 
Sbjct: 314 KPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMN 373

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L++ M    + P V T N+LI  LC   ++   ++++ +M   G+  + ITY+ +L A  
Sbjct: 374 LFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALC 433

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVL 426
           +   V+  + LL++ K++G+ P++  +  ++ G+C   R E AR + E +L
Sbjct: 434 KNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLL 484



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 114/259 (44%), Gaps = 12/259 (4%)

Query: 171 DRAFDVLAEMNAEVHPVDPDH--ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
           D   ++++  N  +H  +P       G ++ +   +        +++ +    I     +
Sbjct: 50  DNKHNLVSSFNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVI 109

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
            +I INC SQ G    + SV   + K G  P+ + L+ LI      G++  A +   +  
Sbjct: 110 LSILINCFSQLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVV 169

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
             G  +  +SY +L+           AL+L   +    ++P V   N +I ++C    + 
Sbjct: 170 ALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVN 229

Query: 349 KTMEVLSDMKSLGLCPNTITYSILL----VACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           +  ++ S+M S G+ P+ +TY+ L+    +  + KD  +    L ++   + + PN+  F
Sbjct: 230 EAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATD----LFNKMIFENINPNVYTF 285

Query: 405 KCII-GMC-SRRYEKARTL 421
             ++ G C  RR ++A+ +
Sbjct: 286 NILVDGFCKERRLKEAKNV 304



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 136/315 (43%), Gaps = 21/315 (6%)

Query: 25  VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI      G++ +  DL   M  + +      ++      CK ++ +KEA
Sbjct: 243 ISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERR-LKEA 301

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
                ++      P + T+N LM      K+   A  +   + + G+  +   Y+ +I  
Sbjct: 302 KNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHG 361

Query: 137 CAKSGKVDA---MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K  KVD    +F+     N+ PD V +N+LI    + G +  A  ++ EM+    P  
Sbjct: 362 FCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVP-- 419

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
            D IT  +++ A     QVD+A  +   +    I+     YT  ++   + G  E A  V
Sbjct: 420 HDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIV 479

Query: 249 YDDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           ++D+  KG I D    +A+I  F  H G  + + ++L + +  G     ++Y  ++ +  
Sbjct: 480 FEDLLVKGYILDVNIYTAMIQGFCSH-GLFDESLDLLSKMEENGCIPNAVTYEIIICSLF 538

Query: 308 NAKNWQKALELYEHM 322
           +     KA +L   M
Sbjct: 539 DKDENDKAEKLLREM 553



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/285 (20%), Positives = 127/285 (44%), Gaps = 19/285 (6%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           +++  ++++N L+    ++ R+ E  ++L  M ++G+      Y++     C   K + +
Sbjct: 277 NINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLV-KEVNK 335

Query: 80  AFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A   F  +     NP + ++++++      K  + A  + + +    +  D   Y +LI 
Sbjct: 336 AKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLID 395

Query: 136 TCAKSGK-------VDAMFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K GK       VD M +   P D++ +N+++ A  ++  VD+A  +L +M  E   +
Sbjct: 396 GLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDE--GI 453

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            PD  T   L+      G+++ AR V++ +          +YT  I      G ++ +  
Sbjct: 454 QPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLD 513

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           +   M + G IP+ V    +I       + + A ++L+E   +G+
Sbjct: 514 LLSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRGL 558


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 183/408 (44%), Gaps = 49/408 (12%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SV 101
           +  +M  KG    +  Y      +C +++ I EA   F  + +    PT+ T+ +L+ S+
Sbjct: 275 VFNEMPLKGCRRNEVAYTHLIHGLCVARR-IDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPD 153
           C S + SE A  +++ ++E G+K +   YT LI +     K +   E         + P+
Sbjct: 334 CGSERKSE-ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPN 392

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAE--------------------VHP------- 186
            + +NALI    + G ++ A DV+  M +                     VH        
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNK 452

Query: 187 -----VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
                V PD +T  +L+     +G  D A  +  +++   +      YT  I+   ++  
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKR 512

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            E AC ++D + +KGV P+ V  +ALID    AGKV+ A  +L++  ++      +++++
Sbjct: 513 VEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNA 572

Query: 302 LM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           L+ G C++ K  ++A  L E M  I L+PTVST   LI  L               M S 
Sbjct: 573 LIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSS 631

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           G  P+  TY+  +    R+  +     ++++ +E+GV P+L  +  +I
Sbjct: 632 GTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 190/416 (45%), Gaps = 35/416 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS--QKAIKEAFRFF 84
           +YN LI    ++G I + +D++E ME + L    + Y+      CKS   KA+    +  
Sbjct: 395 TYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKML 454

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +    P + T+N L+     S + + A+++L L+ + GL  D   YT++I +  KS +V+
Sbjct: 455 ERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVE 514

Query: 145 A---MFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
               +F++     V P+ V++ ALI    ++G VD A  +L +M ++     P+ +T  A
Sbjct: 515 EACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSK--NCLPNSLTFNA 572

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+      G++  A  + + + K  ++ T    TI I+   + GD++ A S +  M   G
Sbjct: 573 LIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG 632

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
             PD    +  I      G++  A +++ + +  G+S  + +YSSL+    +      A 
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAF 692

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCD---GDQ---------------LPKTMEVLSDMK 358
           ++ + M+    +P+  T  +LI  L +   G Q                   +E+L  M 
Sbjct: 693 DVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMV 752

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQ-AKEDGVIPNLVMFKCIIGMCSR 413
              + PN  +Y  L++      ++ V   +     + +G+ P+ ++F  ++  C +
Sbjct: 753 EHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCK 808



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 164/351 (46%), Gaps = 15/351 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T+N +++      + E A Q +  + EAGL  D   YT+LI    +   +D+ F+ 
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275

Query: 149 -NVKP------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            N  P      + V +  LI     +  +D A D+  +M  +     P   T   L+K+ 
Sbjct: 276 FNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDD--ECFPTVRTYTVLIKSL 333

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             + +   A  + K + +  IK     YT+ I+       +E A  +   M +KG++P+ 
Sbjct: 334 CGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNV 393

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
           +  +ALI+     G +E A ++++  +++ +S    +Y+ L+ G C +  N  KA+ +  
Sbjct: 394 ITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS--NVHKAMGVLN 451

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M   K+ P V T N+LI   C          +LS M   GL P+  TY+ ++ +  +  
Sbjct: 452 KMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSK 511

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFN 429
            VE    L    ++ GV PN+VM+  +I G C + + ++A  + E +LS N
Sbjct: 512 RVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN 562



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/290 (24%), Positives = 135/290 (46%), Gaps = 15/290 (5%)

Query: 130 YTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
           Y +L+T    +G V  +F+       +   +I +C   G      D+  +MN +      
Sbjct: 126 YASLLTLLINNGYVGVVFK-------IRLLMIKSCDSVGDALYVLDLCRKMNKDERFELK 178

Query: 190 DHITIG---ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEF 244
             + IG    L+ + A  G VD  ++VY  +     K  P +YT    +N   + G+ E 
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVY--MEMLEDKVCPNIYTYNKMVNGYCKLGNVEE 236

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A      + + G+ PD    ++LI        +++AF++  E   +G     ++Y+ L+ 
Sbjct: 237 ANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIH 296

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
               A+   +A++L+  MK  +  PTV T   LI +LC  ++  + + ++ +M+  G+ P
Sbjct: 297 GLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKP 356

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           N  TY++L+ +   +   E    LL Q  E G++PN++ +  +I G C R
Sbjct: 357 NIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKR 406



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 139/325 (42%), Gaps = 42/325 (12%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +N L+ +  + G VD    V  EM  +   V P+  T   ++      G V+ A +    
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLED--KVCPNIYTYNKMVNGYCKLGNVEEANQYVSK 243

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           I +  +      YT  I    Q  D + A  V+++M  KG   +EV  + LI     A +
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR 303

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           ++ A ++  + K+      + +Y+ L+ +   ++   +AL L + M+   +KP + T   
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CER----------------- 378
           LI +LC   +  K  E+L  M   GL PN ITY+ L+   C+R                 
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423

Query: 379 ----------------KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKART 420
                           K +V   + +L++  E  V+P++V +  +I G C S  ++ A  
Sbjct: 424 LSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYR 483

Query: 421 LNEHVLSFNSGRPQIENKWTSLALM 445
           L    LS  + R  + ++WT  +++
Sbjct: 484 L----LSLMNDRGLVPDQWTYTSMI 504



 Score = 46.6 bits (109), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 112/303 (36%), Gaps = 36/303 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           +RL++ G         + M   G       Y       C+  + +       K+  N   
Sbjct: 610 HRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVS 669

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-------------- 135
           P L T++ L+        +  AF VL+ +++ G +     + +LI               
Sbjct: 670 PDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSE 729

Query: 136 --TCAKSG--KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
              CA S   + D + E        +V P+   +  LI    + G +  A  V   M   
Sbjct: 730 PELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRN 789

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCS--QTG 240
              + P  +   AL+  C    + + A +V   MI    +   P++ +  +  C   + G
Sbjct: 790 -EGISPSELVFNALLSCCCKLKKHNEAAKVVDDMI---CVGHLPQLESCKVLICGLYKKG 845

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
           + E   SV+ ++ + G   DE+    +ID  G  G VEA +E+    +  G      +YS
Sbjct: 846 EKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYS 905

Query: 301 SLM 303
            L+
Sbjct: 906 LLI 908


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 179/400 (44%), Gaps = 20/400 (5%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           ++++N +I    R  R+ E   L++ M  KG    D  Y      +CK+ + I EA    
Sbjct: 280 VNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCR-IDEAQALL 338

Query: 85  KLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             VP P +  FN L++    + + +E    V   +   G   D   ++TL+    K G  
Sbjct: 339 SKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLF 398

Query: 144 DAMFENV--------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            +  E V        KP+   +  LI    + G ++ A  +L EM  +   ++   +   
Sbjct: 399 GSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNT--VGYN 456

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMT 253
           AL+ A    G++  A +++  +     K  P+++T    I    +  + E A ++Y DM 
Sbjct: 457 ALISALCKHGKIHEALDMFGEMSSKGCK--PDIFTFNSLIFGLCRVDEMEDALALYRDMV 514

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            +GVI + V  + LI      G+++ A +++ +   +G  +  I+Y+ L+ A       +
Sbjct: 515 LEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVE 574

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           K L L+E M    L P++ T N LI   C   ++   +E + DM   G  P+ +TY+ L+
Sbjct: 575 KGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLI 634

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
               ++  ++  L L  + + +G+ P+ + +  +I    R
Sbjct: 635 NGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCR 674



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 161/384 (41%), Gaps = 48/384 (12%)

Query: 11  FPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNV 70
           F Y    +  Y  DV       N L ++G     ++L+ DM+ KG               
Sbjct: 368 FVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKG--------------- 412

Query: 71  CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           CK                 P L+T+ +L+         E A  +LR +   G   +   Y
Sbjct: 413 CK-----------------PNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGY 455

Query: 131 TTLITTCAKSGKVDA---MF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
             LI+   K GK+     MF     +  KPD   FN+LI    +   ++ A  +  +M  
Sbjct: 456 NALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVL 515

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQT 239
           E   V  + +T   L+ A    G++   +E  K+++    +G P     Y   I    +T
Sbjct: 516 E--GVIANSVTFNTLIHAFLRRGEI---QEALKLVNDMLFRGCPLDEITYNGLIKALCKT 570

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G  E    ++++M +KG+ P  +  + LI+    AGKV  A E +++  ++G S  I++Y
Sbjct: 571 GAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTY 630

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           +SL+         Q+AL L+E +++  ++P   T N LI  LC          +L     
Sbjct: 631 NSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVE 690

Query: 360 LGLCPNTITYSILLVACERKDDVE 383
            G  PN +T++IL+    ++ + E
Sbjct: 691 NGFVPNDVTWNILVYNFGKQSNSE 714



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 147/343 (42%), Gaps = 17/343 (4%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P   TF ++M       + + A  +LR + + G   +  +Y TLI   +K  +VD   +
Sbjct: 207 SPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALK 266

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            ++        PD   FN +I    +   V     ++  M   +    P+ +T G LM  
Sbjct: 267 LLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRM--ILKGFTPNDMTYGYLMHG 324

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS-VYDDMTKKGVIP 259
                ++D A+ +   +   N+      +   +N   + G    A + VYD M   G +P
Sbjct: 325 LCKTCRIDEAQALLSKVPGPNVVH----FNTLVNGFVRNGRLNEATAFVYDKMINNGYVP 380

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALEL 318
           D    S L++     G   +A E++ +   +G    + +Y+ L+ G C   +  +  L L
Sbjct: 381 DVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLIL 440

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            E +       TV   NALI+ALC   ++ + +++  +M S G  P+  T++ L+    R
Sbjct: 441 REMLTKGFSLNTVG-YNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCR 499

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
            D++E  L L      +GVI N V F  +I    RR E    L
Sbjct: 500 VDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEAL 542



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 92/457 (20%), Positives = 177/457 (38%), Gaps = 66/457 (14%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           VV + L+     S A +  +D+L++       V P+  T G +MKA     +VD A  + 
Sbjct: 180 VVLDVLVVGNCPSVASNVFYDMLSK------GVSPNDYTFGLVMKALCMVNEVDNACLLL 233

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           + + K+       +Y   I+  S+    + A  + ++M   G  PD    + +I      
Sbjct: 234 RDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRL 293

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLM------------------------------- 303
            +V    +++     +G +   ++Y  LM                               
Sbjct: 294 NRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLV 353

Query: 304 -GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
            G   N +  +    +Y+ M +    P V T + L+  LC        +E+++DM + G 
Sbjct: 354 NGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGC 413

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKAR 419
            PN  TY+IL+    +K  +E   ++L +    G   N V +  +I  +C   + +E   
Sbjct: 414 KPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALD 473

Query: 420 TLNE--------HVLSFNS---GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGC 468
              E         + +FNS   G  +++    +LAL  YR+ ++ G I      + ++  
Sbjct: 474 MFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALAL--YRDMVLEGVIANSVTFNTLIHA 531

Query: 469 LQLPYNADIRE--RLVENL---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGI 523
                  +I+E  +LV ++   G   D +  + L   +   G  + +   L EE    G+
Sbjct: 532 FL--RRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVE-KGLGLFEEMIRKGL 588

Query: 524 VPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHR 560
            P +    I +       ++H A    L  ++ + HR
Sbjct: 589 TPSIITCNILINGFCTAGKVHNA----LEFMRDMIHR 621



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 1/149 (0%)

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LID  G A   +    +L + K +GI      +  +M     A    +A  L   MK + 
Sbjct: 110 LIDKLGAAAGFKVIDRLLLQMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVY 169

Query: 327 L-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
             +P+  + N ++  L  G+       V  DM S G+ PN  T+ +++ A    ++V+  
Sbjct: 170 CCEPSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNA 229

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
            +LL    + G +PN ++++ +I   S+R
Sbjct: 230 CLLLRDMTKHGCVPNSMIYQTLIDALSKR 258


>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
          Length = 724

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 176/405 (43%), Gaps = 61/405 (15%)

Query: 81  FRFFKLVPNPTLS--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           +  F L    TL+  T+N L+  CA + D E A  ++  ++  G  +D   Y+ +I +  
Sbjct: 242 YEAFLLSQRQTLTPLTYNALIGACARNDDLEKALNLMSRMRRDGYPSDFVNYSFIIQSLT 301

Query: 139 KSGKVDA-----MFENVKPDRV-----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
           ++ K D+     ++  ++ D++     + N +I    +SG V+RA   LA +    + + 
Sbjct: 302 RTNKSDSSMLQKIYAEIESDKIELDGQLLNDIIVGFAKSGDVNRAMSFLAMVQG--NGLS 359

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P   T+ A++ A  NAG+ + A  +++ + +  +      Y   +    +TG  + A S+
Sbjct: 360 PKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESI 419

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA---------------------------- 280
             +M + G  PDE   S LID   +AG+ E+A                            
Sbjct: 420 VSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRD 479

Query: 281 -------FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
                  F++L+E +N G+S     Y+ ++           AL  ++ M+   ++P   T
Sbjct: 480 RGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVT 539

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC---ERKDDVEVGLMLLS 390
            N LI   C      K  E+   M+  G  P T TY+I++ +    ER +DV+    LL 
Sbjct: 540 WNTLIDCHCKSGHHNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKT---LLG 596

Query: 391 QAKEDGVIPNLVMFKCIIGMCSR-----RYEKARTLNEHVLSFNS 430
           + +  G++ N+V +   +G+  +     R  +A  L   VL  NS
Sbjct: 597 KMQSQGLLANVVTY-TTLGLSEQAINAFRVMRADGLKPSVLVLNS 640



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 151/349 (43%), Gaps = 22/349 (6%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLST 94
           GR  E   + E+++  GL+   + Y+A      K+  ++K+A      +     +P   T
Sbjct: 376 GRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKT-GSLKDAESIVSEMERSGFSPDEHT 434

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------ 148
           +++L+   A++   E A  VL+ ++ +G++ +  +++ ++ +    GK    F+      
Sbjct: 435 YSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMR 494

Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              V PDR  +N +I   G+   +D A      M  E   V PD +T   L+     +G 
Sbjct: 495 NSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRME--GVQPDAVTWNTLIDCHCKSGH 552

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            ++A E+++ + +         Y I IN   +   WE   ++   M  +G++ + V  + 
Sbjct: 553 HNKAEELFEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTT 612

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           L       G  E A    +  +  G+   ++  +SL+ A    +   +A  + ++MK   
Sbjct: 613 L-------GLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEAFSVLQYMKEND 665

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           LKP V T   L+ AL   ++  K   V  +M   G  P+    ++L  A
Sbjct: 666 LKPDVVTYTTLMKALIRVEKFDKVPAVYEEMTLSGCTPDRKARAMLRSA 714



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 138/350 (39%), Gaps = 79/350 (22%)

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENVK-----PDR 154
           A S D   A   L +VQ  GL         +IT    +G+ +   A+FE +K     P  
Sbjct: 338 AKSGDVNRAMSFLAMVQGNGLSPKTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRT 397

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
             +NAL+    ++G++  A  +++EM  E     PD  T   L+ A ANAG+ + AR V 
Sbjct: 398 RAYNALLKGYVKTGSLKDAESIVSEM--ERSGFSPDEHTYSLLIDAYANAGRWESARIVL 455

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF---- 270
           K +    ++    V++  +      G W+ +  V  +M   GV PD  F + +ID     
Sbjct: 456 KEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKC 515

Query: 271 ----------------------------------AGHAGKVEAAFEILQEAKNQGISVGI 296
                                             +GH  K E  FE +QE+   G S   
Sbjct: 516 NCLDHALATFDRMRMEGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQES---GCSPCT 572

Query: 297 ISYSSLMGACSNAKNWQ----------------------------KALELYEHMKSIKLK 328
            +Y+ ++ +    + W+                            +A+  +  M++  LK
Sbjct: 573 TTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLGLSEQAINAFRVMRADGLK 632

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           P+V  +N+LI A  +  +  +   VL  MK   L P+ +TY+ L+ A  R
Sbjct: 633 PSVLVLNSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKALIR 682


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 148/318 (46%), Gaps = 13/318 (4%)

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENVK-----P 152
           +C   + +E A ++ R ++E G   D   Y  LI    K  +++   ++ + ++     P
Sbjct: 101 LCKKGQIAE-AMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSP 159

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
             V +  LI     +G VD A D+L EM  E   + P+ +T  AL++   + G+V+RA  
Sbjct: 160 TVVTYTTLIHGFCTAGRVDAAMDILDEM--EHRGITPNTVTYTALIQGLCDCGEVERAIL 217

Query: 213 VYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           V K +     +  P V  YT  I+   Q G +E      D+M   G  P+    +ALI  
Sbjct: 218 VLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHG 277

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G    A  +L E    G  + ++ Y+SL+           A E+   M    + P 
Sbjct: 278 LCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPD 337

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           V T  +LI  LCD   L + + ++ +M++ G+ PN++TY+ L+    + D  +  L L++
Sbjct: 338 VFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVN 397

Query: 391 QAKEDGVIPNLVMFKCII 408
           + K +G++P   ++K + 
Sbjct: 398 EMKSNGLMPAGDIYKILF 415



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 129/331 (38%), Gaps = 47/331 (14%)

Query: 58  DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQ 113
           D D + ++R  N    +  I EA   F+ +      P   T+N+L++        E    
Sbjct: 88  DTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVS 147

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACG 165
           ++  +Q  G       YTTLI     +G+VDA  +         + P+ V + ALI    
Sbjct: 148 LMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLC 207

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK---------- 215
             G V+RA  VL EM    +   P+ +T   L+      G  +   E             
Sbjct: 208 DCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPN 267

Query: 216 ------MIHKYNIKGT-------------------PEVYTIAINCCSQTGDWEFACSVYD 250
                 +IH    KG+                     +Y   I+   + G+ +FA  +  
Sbjct: 268 NATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQI 327

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            M +KGV PD    ++LI     AG ++ A  ++QE + +GI    ++Y++L+   + A 
Sbjct: 328 LMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQAD 387

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITAL 341
               AL+L   MKS  L P       L  +L
Sbjct: 388 RTDHALQLVNEMKSNGLMPAGDIYKILFKSL 418



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 153/344 (44%), Gaps = 31/344 (9%)

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           D D I+    +      GQ+  A E+++ + +         Y I IN   +    E   S
Sbjct: 88  DTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVS 147

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           + D+M  +G  P  V  + LI     AG+V+AA +IL E +++GI+   ++Y++L+    
Sbjct: 148 LMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLC 207

Query: 308 NAKNWQKALELYEHMK--SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           +    ++A+ + + MK    +  P V T   LI  LC        ME L +M   G  PN
Sbjct: 208 DCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPN 267

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNE 423
             TY+ L+    +K       +LL++    G   ++V++  +I G+C     + AR +  
Sbjct: 268 NATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREM-- 325

Query: 424 HVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE 483
            +L    G       +TSL         + G +    ++ + LG +Q     ++R +   
Sbjct: 326 QILMVEKGVAPDVFTYTSL---------IQG-LCDAGLLDEALGLMQ-----EMRAK--- 367

Query: 484 NLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
             G+  +++  +   +LI+GF + D    A  L+ E  S G++P
Sbjct: 368 --GIVPNSVTYT---TLINGFTQADRTDHALQLVNEMKSNGLMP 406


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 178/407 (43%), Gaps = 33/407 (8%)

Query: 35  LIRQGRISECIDLLEDM--ERKGLLDMDKVYHARFFNVCKSQK---AIKE--------AF 81
           L R+GR+ + + LL++M   +          H  F  + K  K   A+ E         F
Sbjct: 202 LFRKGRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKF 261

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              ++ PN    T  ++  +C S + ++ A+ VL  + + G   +      L+T   ++ 
Sbjct: 262 AEHEVFPNSIWLT-QLISRLCRSGR-TDRAWDVLHGLMKLGGVMEAASCNALLTALGRAR 319

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN---AEVHPVDPD 190
           +   M          +++P+ V F  LI    +   VD A +V  +MN   +    V+PD
Sbjct: 320 EFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPD 379

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC----SQTGDWEFAC 246
            IT   L+      G   R  E   ++ +   +      T+  NC      +    E A 
Sbjct: 380 VITYNTLIDGLCKVG---RQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAAR 436

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            ++D M K GV P+ V L+ L+D     G++  A E   E + +G+    ++Y++L+ A 
Sbjct: 437 ELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAF 496

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            N  N +KA+EL++ M      P       LI+ L    +L +   VLS MK  G  P+ 
Sbjct: 497 CNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDI 556

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +++++L+    RK+ ++    +L + +  G+ P+ V +  +I   S+
Sbjct: 557 VSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSK 603



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 167/405 (41%), Gaps = 30/405 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-------- 84
           +RL R GR     D+L      GL+ +  V  A   N   +       F+          
Sbjct: 278 SRLCRSGRTDRAWDVLH-----GLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMK 332

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-----LKADCKLYTTLITTCAK 139
           ++   P + TF +L++     +  + A +V   +         ++ D   Y TLI    K
Sbjct: 333 EMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCK 392

Query: 140 SGKVD---AMFENVK------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
            G+ +    + E ++      P+ V +N LI    ++  ++ A ++  +MN +  P  P+
Sbjct: 393 VGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVP--PN 450

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +T+  L+      G+++ A E +  +    +KG    YT  I       + E A  ++D
Sbjct: 451 VVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFD 510

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M + G  PD +    LI     AGK++ A  +L + K  G S  I+S++ L+       
Sbjct: 511 EMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKN 570

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
              +A E+ + M++  +KP   T N LI+             ++  M   GL P  +TY 
Sbjct: 571 KLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYG 630

Query: 371 ILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
            L+ A C   +  E   +    +    V PN V++  +I    R+
Sbjct: 631 ALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRK 675



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 88/406 (21%), Positives = 172/406 (42%), Gaps = 22/406 (5%)

Query: 33  NRLIRQGRISECIDLLEDM---ERKGLLDMDKV--YHARFFNVCKSQKAIKEAFRFFKLV 87
           N L +  R+ E +++ E M   E  G L    V  Y+     +CK  +  +E     + +
Sbjct: 348 NHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQ-EEGLGLVERM 406

Query: 88  PN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            +     P   T+N L+     +   E A ++   + + G+  +     TL+    K G+
Sbjct: 407 RSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGR 466

Query: 143 VDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           ++   E         +K + V + ALI A      +++A ++  EM        PD I  
Sbjct: 467 INGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEA--GCSPDAIVY 524

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+   + AG++DRA  V   + +         + + IN   +    + A  +  +M  
Sbjct: 525 YTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMEN 584

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G+ PD V  + LI      G    A  ++++   +G+   +++Y +L+ A     N  +
Sbjct: 585 AGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDE 644

Query: 315 ALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           A++++  M S  K+ P     N LI +LC  +Q+   + ++ DMK  G+ PNT T++ + 
Sbjct: 645 AMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMF 704

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
              + K+ +     L+ +  E    P+ +  + +    S   E A+
Sbjct: 705 KGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAVGETAK 750


>gi|298711678|emb|CBJ32729.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 832

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 100/410 (24%), Positives = 169/410 (41%), Gaps = 41/410 (10%)

Query: 95  FNMLMSVCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITTCAKSGK----VDAMFEN 149
           FN +M  C  +   + A  +L  +  E G + D   Y   I     +G+    +  + E+
Sbjct: 375 FNRVMQACVDAGRWQEAVALLDHMKDEVGAEPDLVTYGIAINAYGNAGEWRRALGVLKES 434

Query: 150 VKPDR-----------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
           +   R           + F   I AC  +G  D A  VL + +     V P+ + +   +
Sbjct: 435 LPEMRTGGGASCENACLCFAYAIRACKHAGEFDEALGVL-DRDVPATGVVPNALVLHEAL 493

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTP----EVYTIAINCCSQTGDWEFACSVYDDMTK 254
            AC   G+  +A E+          G P      YT AI  C + G WE A +++    +
Sbjct: 494 TACGVGGRWQQALELLPRALAV-ADGKPSSCLRSYTAAIKACGRAGQWEDALALFRRGQR 552

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGACSNAKNWQ 313
            G+ PDEV  + ++      G  +    +L+E     G+   +  Y++ + AC    +W+
Sbjct: 553 DGLQPDEVCYAEVMSACAGGGCADETLGLLREMPAAAGLRPTVPCYNAAIVACGAGGDWR 612

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GL-CPNTITYSI 371
           +++EL E M ++ L P VST N  I AL  G Q  + +++L  M +  GL  P+  +Y+ 
Sbjct: 613 RSVELLEEMPTVGLAPGVSTCNMAINALRRGGQCQRILDLLERMSTAPGLPAPDATSYNT 672

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNEHVLSF 428
            + ACE     E  + L    +  GV P++V +   I   G C R  E    L E     
Sbjct: 673 AITACESAGRFEEAVGLFRAMERIGVAPDVVGYTATIQALGRCGRWEEALALLGEVRSRA 732

Query: 429 NSGRPQIEN------------KWTSLALMVYREAIVAGTIPTVEVVSKVL 466
            +  P +              +W   A+ V+R  +    +PT    S V+
Sbjct: 733 TAAEPNVRTYVAAVHAAGHAGQWER-AVSVFRLMLADSLVPTDRAWSAVI 781



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 115/266 (43%), Gaps = 15/266 (5%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P+  L ++   +  C  +   E A  + R  Q  GL+ D   Y  +++ CA  G  D   
Sbjct: 520 PSSCLRSYTAAIKACGRAGQWEDALALFRRGQRDGLQPDEVCYAEVMSACAGGGCADETL 579

Query: 148 ---------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                      ++P    +NA I ACG  G   R+ ++L EM      + P   T    +
Sbjct: 580 GLLREMPAAAGLRPTVPCYNAAIVACGAGGDWRRSVELLEEM--PTVGLAPGVSTCNMAI 637

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKG 256
            A    GQ  R  ++ + +        P+   Y  AI  C   G +E A  ++  M + G
Sbjct: 638 NALRRGGQCQRILDLLERMSTAPGLPAPDATSYNTAITACESAGRFEEAVGLFRAMERIG 697

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYSSLMGACSNAKNWQK 314
           V PD V  +A I   G  G+ E A  +L E +++  +    + +Y + + A  +A  W++
Sbjct: 698 VAPDVVGYTATIQALGRCGRWEEALALLGEVRSRATAAEPNVRTYVAAVHAAGHAGQWER 757

Query: 315 ALELYEHMKSIKLKPTVSTMNALITA 340
           A+ ++  M +  L PT    +A+I+A
Sbjct: 758 AVSVFRLMLADSLVPTDRAWSAVISA 783



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 119/313 (38%), Gaps = 58/313 (18%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           F   I AC + G  +R   VL E  +E      + +    +M+AC +AG+   A  V  +
Sbjct: 338 FKLAIEACVRGGRWERGLSVLMERTSEKTDRKWEVLPFNRVMQACVDAGRWQEA--VALL 395

Query: 217 IH-KYNIKGTPEV--YTIAINCCSQTGDWEFA------------------------CSVY 249
            H K  +   P++  Y IAIN     G+W  A                        C  Y
Sbjct: 396 DHMKDEVGAEPDLVTYGIAINAYGNAGEWRRALGVLKESLPEMRTGGGASCENACLCFAY 455

Query: 250 -------------------DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA--- 287
                               D+   GV+P+ + L   +   G  G+ + A E+L  A   
Sbjct: 456 AIRACKHAGEFDEALGVLDRDVPATGVVPNALVLHEALTACGVGGRWQQALELLPRALAV 515

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
            +   S  + SY++ + AC  A  W+ AL L+   +   L+P       +++A   G   
Sbjct: 516 ADGKPSSCLRSYTAAIKACGRAGQWEDALALFRRGQRDGLQPDEVCYAEVMSACAGGGCA 575

Query: 348 PKTMEVLSDMK-SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
            +T+ +L +M  + GL P    Y+  +VAC    D    + LL +    G+ P +     
Sbjct: 576 DETLGLLREMPAAAGLRPTVPCYNAAIVACGAGGDWRRSVELLEEMPTVGLAPGVSTCNM 635

Query: 407 II------GMCSR 413
            I      G C R
Sbjct: 636 AINALRRGGQCQR 648



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 161/411 (39%), Gaps = 79/411 (19%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-----MKACANAGQVDRAR 211
           ++A++    + G    A  VL  M+ ++ P   D  T+ A      M AC  A Q     
Sbjct: 261 YHAVMQRLEECGRWREAAAVLRRMHRKLGPRAGDVPTLSAACLHKAMSACFAAEQWGTCS 320

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           ++ +    +  + +   + +AI  C + G WE   SV  + T +                
Sbjct: 321 DLLEEARGWATEASYRSFKLAIEACVRGGRWERGLSVLMERTSE---------------- 364

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK-SIKLKPT 330
               K +  +E+L              ++ +M AC +A  WQ+A+ L +HMK  +  +P 
Sbjct: 365 ----KTDRKWEVL-------------PFNRVMQACVDAGRWQEAVALLDHMKDEVGAEPD 407

Query: 331 VSTMNALITALCDGDQLPKTM----EVLSDMKSLG--LCPNT-ITYSILLVACERKDDVE 383
           + T    I A  +  +  + +    E L +M++ G   C N  + ++  + AC+   + +
Sbjct: 408 LVTYGIAINAYGNAGEWRRALGVLKESLPEMRTGGGASCENACLCFAYAIRACKHAGEFD 467

Query: 384 VGLMLLSQ-AKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLSFNSGRPQI----- 435
             L +L +     GV+PN ++    +  C    R+++A  L    L+   G+P       
Sbjct: 468 EALGVLDRDVPATGVVPNALVLHEALTACGVGGRWQQALELLPRALAVADGKPSSCLRSY 527

Query: 436 ---------ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLG 486
                      +W   AL ++R     G  P     ++V+        AD      E LG
Sbjct: 528 TAAIKACGRAGQWED-ALALFRRGQRDGLQPDEVCYAEVMSACAGGGCAD------ETLG 580

Query: 487 V-----SADALKRSNLCS----LIDGFGEYDPRAFSLLEEAASFGIVPCVS 528
           +     +A  L+ +  C     +  G G    R+  LLEE  + G+ P VS
Sbjct: 581 LLREMPAAAGLRPTVPCYNAAIVACGAGGDWRRSVELLEEMPTVGLAPGVS 631


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 179/419 (42%), Gaps = 29/419 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPNPTLSTF 95
           + G +   + LL+ M + G    D V ++   N    Q  + +A      ++  P    +
Sbjct: 259 QNGLLDRAVQLLDRMPQYGCTP-DVVIYSTLVNGFSEQGRVDDAIELLNGMLCKPNTICY 317

Query: 96  NM-LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC-AKSGKVDAMFE----- 148
           N  L  +C + +  +    ++ +V++  L  +     +++T+C  ++G VD   E     
Sbjct: 318 NAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATF--SMLTSCLCQNGLVDCAMEVLEQM 375

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                +PD V++N LI +  + G VD A  +L  M     P  PD I+  A +K    A 
Sbjct: 376 HKYGCRPDAVIYNTLIYSFSEQGRVDDALKLLNSM-----PCSPDVISFNAALKGLCRAE 430

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           + D A E+   + + +       + I I+   Q G    A  V++ M K G  PD V  S
Sbjct: 431 RWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAIEVFEQMPKYGCTPDIVTYS 490

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           +LI+     G VE+A E+ Q   +      I  Y++++     A  W+ A EL  +M   
Sbjct: 491 SLINGLSEQGLVESAIELFQ---SMPCKPDIFGYNAVLKGLCRAARWEDAGELISNMARK 547

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
              P   T N LI +LC    + + +EV   M   G  P+  TY+ L+     +  ++  
Sbjct: 548 DCPPNEITFNILINSLCQKGLVDRAIEVFEQMPKYGSTPDIFTYNALINGFSEQGRLDDA 607

Query: 386 LMLLS--QAKEDGVIPNLVMFKCIIGMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTS 441
             LLS    K D V  N      + G+C + R+++A  +   +L       ++  K+ +
Sbjct: 608 RRLLSTMSCKPDAVSYN----SALKGLCRAERWKEAEEVVAEMLRMKCPPNEVTFKYAN 662



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 156/382 (40%), Gaps = 24/382 (6%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DA------MFE 148
           N+L+    + +    A +VL  ++ AG  AD   + TL+    + G++ DA         
Sbjct: 116 NILIKKLCAQRRLADAERVLDALKAAG-AADPVSHNTLVAGYCRDGRLADAERLLAAAGL 174

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           +   + V +  LI    +SG +  A  ++A M     PV PD  T   ++     A Q +
Sbjct: 175 SGAANVVTYTTLINGYCRSGRLADALALIASM-----PVAPDTYTYNTVLMGLCGARQWE 229

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A  +   + + +       +   I    Q G  + A  + D M + G  PD V  S L+
Sbjct: 230 DAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLV 289

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +     G+V+ A E+L            I Y++ +     A+ W+   +L   M      
Sbjct: 290 NGFSEQGRVDDAIELL---NGMLCKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCL 346

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P  +T + L + LC    +   MEVL  M   G  P+ + Y+ L+ +   +  V+  L L
Sbjct: 347 PNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKL 406

Query: 389 LSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 446
           L+        P+++ F   + G+C + R++ A  L   +L  +   P IE  +  L   +
Sbjct: 407 LNSMP---CSPDVISFNAALKGLCRAERWDDAEELIVQMLREDC--PLIEMTFNILIDSL 461

Query: 447 YREAIVAGTIPTVEVVSKVLGC 468
            +   V   I   E + K  GC
Sbjct: 462 CQNGRVNNAIEVFEQMPK-YGC 482


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/420 (23%), Positives = 186/420 (44%), Gaps = 21/420 (5%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV+      +RL R G++ E  +L   M  +G       Y+A    +CK +  I+ A++ 
Sbjct: 44  DVATYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALINGLCKDEN-IERAYKL 102

Query: 84  FKLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
            + + +    P   T+N ++S +C   K SE A Q    +   G   D   Y  L+    
Sbjct: 103 LEEMASKGYEPDNITYNTILSGLCRMGKVSE-AKQFFDSMPSRGYSPDVVAYNGLLDALY 161

Query: 139 KSGKV----------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
           K GKV          D     V PD + +N LI    +    D A  +  ++ A+ +   
Sbjct: 162 KEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYM-- 219

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD +T  +++   A    +D A E++K +           Y+I ++   + G+      +
Sbjct: 220 PDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLEL 279

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           Y++MT+K   PD +  +A+ID    A KV+ A ++L+E    G    +++Y+ L+     
Sbjct: 280 YEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCK 339

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                KA EL+  M      P + + + ++  LC  +++     +   M    L P+ +T
Sbjct: 340 TNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVT 399

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
           ++IL+    +   ++    LL    E  V+P+ V    ++ G+C  +R ++A  L ++++
Sbjct: 400 FNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMV 459



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 87/383 (22%), Positives = 171/383 (44%), Gaps = 47/383 (12%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T++ ++S +C + K +E A +++  + E G+  D   YT ++    ++GKVD   E
Sbjct: 8   PDVVTYSTIISGLCKTGKVTE-ALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADE 66

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD------------ 188
                       + V +NALI    +   ++RA+ +L EM ++ +  D            
Sbjct: 67  LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLC 126

Query: 189 ---------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                                PD +    L+ A    G+V  A  ++K +   + K  P+
Sbjct: 127 RMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPD 186

Query: 228 V--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
           +  Y   I+   +    + A  ++ D+  KG +PD V  ++++        ++ A E+ +
Sbjct: 187 LITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFK 246

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           +  + G +    +YS ++       N  + LELYE M   +  P V   NA+I  LC   
Sbjct: 247 KMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAK 306

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           ++    +VL +M  +G  P+ +TY+ILL    + + V+    L S   ++G  P++V + 
Sbjct: 307 KVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYS 366

Query: 406 CII-GMC-SRRYEKARTLNEHVL 426
            ++ G+C + +   AR L + ++
Sbjct: 367 VVLNGLCKTNKVHDARVLFDRMI 389



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 96/449 (21%), Positives = 198/449 (44%), Gaps = 25/449 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L + G+++E ++++E+M  KG+      Y      +C++ K  +    F K++    +  
Sbjct: 20  LCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSAN 79

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------D 144
              +N L++     ++ E A+++L  +   G + D   Y T+++   + GKV       D
Sbjct: 80  TVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRMGKVSEAKQFFD 139

Query: 145 AM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           +M      PD V +N L+ A  + G V  A+ +   M+     V PD IT   L+     
Sbjct: 140 SMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCR 199

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             + D A +++K +           Y   +   ++  + + A  ++  M   G  P+   
Sbjct: 200 VEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGAT 259

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            S ++      G +    E+ +E   +  S  ++  ++++     AK    A ++ E M 
Sbjct: 260 YSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMS 319

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
            I   P V T N L+  LC  + + K  E+ S M   G  P+ ++YS++L    + + V 
Sbjct: 320 KIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVH 379

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQ------- 434
              +L  +  E  ++P++V F  ++ G+C + + ++A+ L + V+S ++  P        
Sbjct: 380 DARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLD-VMSEHNVLPDGVTCTTL 438

Query: 435 ----IENKWTSLALMVYREAIVAGTIPTV 459
                 +K T  A+ +++  +  GT+  V
Sbjct: 439 MHGLCRDKRTDEAVRLFQYMVEKGTVADV 467



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 119/265 (44%), Gaps = 29/265 (10%)

Query: 226 PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
           P+V  Y+  I+   +TG    A  + ++MT+KGV PD    + ++D    AGKV+ A E+
Sbjct: 8   PDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADEL 67

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
             +   +G S   ++Y++L+      +N ++A +L E M S   +P   T N +++ LC 
Sbjct: 68  FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCR 127

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV--EVGLMLLSQAKEDGVIPNL 401
             ++ +  +    M S G  P+ + Y+ LL A  ++  V    GL       +  V P+L
Sbjct: 128 MGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDL 187

Query: 402 VMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 460
           + +  +I G C  R EK                      T  A+ ++++ I  G +P   
Sbjct: 188 ITYNTLIDGFC--RVEK----------------------TDEAMKLFKDVIAKGYMPDTV 223

Query: 461 VVSKVLGCLQLPYNADIRERLVENL 485
             + +L  L    N D  E + + +
Sbjct: 224 TYNSILLGLARKSNMDEAEEMFKKM 248



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/392 (20%), Positives = 161/392 (41%), Gaps = 23/392 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP------ 88
           L R G++SE     + M  +G    D V +    +    +  + EA+  FK +       
Sbjct: 125 LCRMGKVSEAKQFFDSMPSRGY-SPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKV 183

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L T+N L+      + ++ A ++ + V   G   D   Y +++   A+   +D   E
Sbjct: 184 APDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEE 243

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             K        P+   ++ +++   + G + R  ++  EM  +     PD +   A++  
Sbjct: 244 MFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEK--RFSPDVLLCNAVIDM 301

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              A +VD A +V + + K  I   P+V  Y I ++   +T   + A  ++  M   G  
Sbjct: 302 LCKAKKVDDAHKVLEEMSK--IGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCA 359

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD V  S +++      KV  A  +      + +   +++++ LM     A    +A +L
Sbjct: 360 PDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDL 419

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            + M    + P   T   L+  LC   +  + + +   M   G   + + ++I+L    R
Sbjct: 420 LDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCR 479

Query: 379 KDDVEVGLMLL-SQAKEDGVI-PNLVMFKCII 408
           +  +   L+   S  K DG   P++V +  ++
Sbjct: 480 EGKLAQALLFFKSMVKSDGEFSPDVVTYTTLV 511



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 133/303 (43%), Gaps = 21/303 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPTL 92
           R G ++ C++L E+M  K       + +A    +CK++K + +A +      K+   P +
Sbjct: 269 RVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKK-VDDAHKVLEEMSKIGAVPDV 327

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DA 145
            T+N+L+     +   + A ++   + + G   D   Y+ ++    K+ KV       D 
Sbjct: 328 VTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDR 387

Query: 146 MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           M E  + PD V FN L+    ++G +D A D+L  M+   H V PD +T   LM      
Sbjct: 388 MIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSE--HNVLPDGVTCTTLMHGLCRD 445

Query: 205 GQVDRAREVYK-MIHKYNIKGT-PEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIPD 260
            + D A  +++ M+ K  +    P    +A  C  + G    A   +  M K      PD
Sbjct: 446 KRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLC--REGKLAQALLFFKSMVKSDGEFSPD 503

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + L++    AG+V+ A +  Q+    G +   ++Y++LM          +A  L +
Sbjct: 504 VVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQ 563

Query: 321 HMK 323
            MK
Sbjct: 564 AMK 566



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 116/271 (42%), Gaps = 37/271 (13%)

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           +PD +T   ++      G+V  A E+ + + +  +      YTI ++   + G  + A  
Sbjct: 7   EPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADE 66

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL----- 302
           ++  M ++G   + V  +ALI+       +E A+++L+E  ++G     I+Y+++     
Sbjct: 67  LFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLC 126

Query: 303 -MGACSNAKNWQKAL-----------------ELYEH--------------MKSIKLKPT 330
            MG  S AK +  ++                  LY+               M   K+ P 
Sbjct: 127 RMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPD 186

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           + T N LI   C  ++  + M++  D+ + G  P+T+TY+ +L+   RK +++    +  
Sbjct: 187 LITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFK 246

Query: 391 QAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
           +  + G  PN   +  ++    R    AR L
Sbjct: 247 KMVDSGCAPNGATYSIVLSGHCRVGNMARCL 277


>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 754

 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 102/500 (20%), Positives = 196/500 (39%), Gaps = 46/500 (9%)

Query: 19  ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
             Y++DV   ++  + L  +G I+ C+++ ++  +  L D      A  F     +   +
Sbjct: 71  GKYSYDVETLINKLSSLPPRGSIARCLEIFKN--KLSLNDF-----ALVFKEFAQRGDWQ 123

Query: 79  EAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            + R FK +       P    + +++S+       E + ++   +   G+      YT L
Sbjct: 124 RSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKSTEIFEEMPTHGVPRSVFSYTAL 183

Query: 134 ITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG-AVDRAFDVLAEMNAEV 184
           I +  + G+ +   E         V P  + +N +I +C + G   +    + AEM  E 
Sbjct: 184 INSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNWEGLLSLFAEMRHE- 242

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             + PD IT   L+ ACAN G  D A  V++ +++  +      Y   +    +    E 
Sbjct: 243 -GIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEK 301

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
              +  +M   G +PD    + L++     G +  A  + ++ +        ++YS L+ 
Sbjct: 302 VSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLN 361

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                  +    EL+  MK    +P V T N LI    +G    + + +  DM    + P
Sbjct: 362 LYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEP 421

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 424
           N  TY  L+ AC +    E    +L    E G++P+   +  +I      Y +A +  E 
Sbjct: 422 NMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVI----EAYGQAASYEEA 477

Query: 425 VLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN 484
           ++ FN+                       G+ PTVE  + ++            E ++  
Sbjct: 478 LVMFNTMNEM-------------------GSKPTVETYNSLINMFARGGLYKESEAIMWK 518

Query: 485 LGVSADALKRSNLCSLIDGF 504
           +G S  A  R +   +I+G+
Sbjct: 519 MGESGVARDRDSFNGVIEGY 538



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/422 (22%), Positives = 177/422 (41%), Gaps = 24/422 (5%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
            H V   + SY  LI    R G+    ++LLE M+++ +      Y+    +  +     
Sbjct: 170 THGVPRSVFSYTALINSYGRHGQYEVSLELLERMKKEKVTPSILTYNTVINSCARGGLNW 229

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +     F  + +    P + T+N L++ CA+    + A  V R + E G+  D   Y  L
Sbjct: 230 EGLLSLFAEMRHEGIQPDIITYNTLLNACANRGLGDEAEMVFRTMNEGGMVPDITTYRNL 289

Query: 134 ITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           + T  K  K++ + E +K        PD   +N L+ A    G +  A  V  +M  E  
Sbjct: 290 VETFGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAYASKGDIRHAMGVFRQMQ-EAR 348

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            V P+ +T   L+      G+ D  RE++  +   N +     Y + I    + G ++  
Sbjct: 349 CV-PNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEV 407

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
            +++ DM ++ V P+      LI   G  G  E A +IL     +GI     +Y+ ++ A
Sbjct: 408 VTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEA 467

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
              A ++++AL ++  M  +  KPTV T N+LI     G    ++  ++  M   G+  +
Sbjct: 468 YGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESGVARD 527

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK------CIIGMCSRRYEKAR 419
             +++ ++    +    E  +    + ++    P+   F+      C  G+     E+ R
Sbjct: 528 RDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDESEEQFR 587

Query: 420 TL 421
            +
Sbjct: 588 EI 589



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 134/299 (44%), Gaps = 10/299 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P +S++N+L+   AS  D   A  V R +QEA    +   Y+ L+      G+ D + E 
Sbjct: 316 PDISSYNVLLEAYASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVREL 375

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  N +PD   +N LI   G+ G       +  +M  E   V+P+  T   L+ AC
Sbjct: 376 FLEMKVSNTEPDVGTYNVLIEVFGEGGYFKEVVTLFHDMVEE--NVEPNMGTYEGLIYAC 433

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G  + A+++   + +  I  + + YT  I    Q   +E A  +++ M + G  P  
Sbjct: 434 GKGGLHEDAKKILLHMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTV 493

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++LI+     G  + +  I+ +    G++    S++ ++        +++A++ Y  
Sbjct: 494 ETYNSLINMFARGGLYKESEAIMWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVE 553

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           ++  + +P   T  A+++  C    + ++ E   ++++ G+ P+ + Y +++    R +
Sbjct: 554 LEKARFQPDERTFEAVLSVYCTAGLVDESEEQFREIRASGILPSVMCYCMMIAVYARSN 612



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 88/425 (20%), Positives = 164/425 (38%), Gaps = 62/425 (14%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           + ++ +L +  ++SE   LL++ME  G L     Y+        S+  I+ A   F+ + 
Sbjct: 290 VETFGKLNKLEKVSE---LLKEMESSGNLPDISSYNV-LLEAYASKGDIRHAMGVFRQMQ 345

Query: 89  N----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV- 143
                P   T++ML+++       +   ++   ++ +  + D   Y  LI    + G   
Sbjct: 346 EARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVSNTEPDVGTYNVLIEVFGEGGYFK 405

Query: 144 -------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                  D + ENV+P+   +  LI ACG+ G  + A  +L  M+ +   + P       
Sbjct: 406 EVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILLHMDEK--GIVPSTKAYTG 463

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS------------------- 237
           +++A   A   + A  ++  +++   K T E Y   IN  +                   
Sbjct: 464 VIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAIMWKMGESG 523

Query: 238 ----------------QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
                           Q G +E A   Y ++ K    PDE    A++     AG V+ + 
Sbjct: 524 VARDRDSFNGVIEGYRQGGQFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDESE 583

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           E  +E +  GI   ++ Y  ++   + +  W  A E+ + M + K    VS ++ ++  +
Sbjct: 584 EQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEVLDEMVTNK----VSNIHQVVGKM 639

Query: 342 CDGD-----QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
             GD            V   + S G       Y+ LL A       E    +LS+A + G
Sbjct: 640 MKGDYDDYSNWQMVEYVFDKLNSEGCGLGMRFYNTLLEALWWLGQKERAARVLSEAIKRG 699

Query: 397 VIPNL 401
           + P L
Sbjct: 700 LFPEL 704



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/268 (20%), Positives = 98/268 (36%), Gaps = 46/268 (17%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
           P+   +  ++     +   E A  +   + E G K   + Y +LI   A+ G   + +A+
Sbjct: 456 PSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGSKPTVETYNSLINMFARGGLYKESEAI 515

Query: 147 F-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V  DR  FN +I    Q G  + A     E+  E     PD  T  A++   
Sbjct: 516 MWKMGESGVARDRDSFNGVIEGYRQGGQFEEAIKTYVEL--EKARFQPDERTFEAVLSVY 573

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV---- 257
             AG VD + E ++ I    I  +   Y + I   +++  W+ A  V D+M    V    
Sbjct: 574 CTAGLVDESEEQFREIRASGILPSVMCYCMMIAVYARSNRWDDAYEVLDEMVTNKVSNIH 633

Query: 258 ----------------------IPDEV----------FLSALIDFAGHAGKVEAAFEILQ 285
                                 + D++          F + L++     G+ E A  +L 
Sbjct: 634 QVVGKMMKGDYDDYSNWQMVEYVFDKLNSEGCGLGMRFYNTLLEALWWLGQKERAARVLS 693

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQ 313
           EA  +G+   +   S L+ +    + W+
Sbjct: 694 EAIKRGLFPELFRKSKLVWSVDVHRMWE 721


>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/429 (22%), Positives = 179/429 (41%), Gaps = 29/429 (6%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           +   Y++DV   ++  + L  +G I+ C+D+ ++  R  L D   V     F    ++  
Sbjct: 75  EKGKYSYDVETLINKLSSLPPRGSIARCLDIFKN--RLSLNDFSLV-----FKEFAARGD 127

Query: 77  IKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            + + R FK +       P    + +++S+       E   ++   +   G+      YT
Sbjct: 128 WQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYT 187

Query: 132 TLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRA--FDVLAEMN 181
            LI    ++G+ +   E         V P+ + +N +I AC + G +D      + AEM 
Sbjct: 188 ALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACAR-GDLDWEGLLGLFAEMR 246

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
            E   V PD +T   L+ ACA  G  D A  V+K + +  I      Y+  +    + G 
Sbjct: 247 HE--GVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGK 304

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            E    +  +M  +G +PD    + LI+     G ++ A ++ ++ +  G      +YS 
Sbjct: 305 LEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSI 364

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+        +    EL+  MK    +P  +T N LI    +G    + + +  D+    
Sbjct: 365 LLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDEN 424

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
           + PN  TY  L+ AC +    E    +L      G++P+   +  +I      Y +A   
Sbjct: 425 IDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLI----EAYGQAALY 480

Query: 422 NEHVLSFNS 430
           +E +++FN+
Sbjct: 481 DEALVAFNT 489



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 157/366 (42%), Gaps = 20/366 (5%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           +  V   + SY  LI    R G+    ++LLE M+R+ +      Y+    N C      
Sbjct: 176 SQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNT-VINACARGDLD 234

Query: 78  KEAF-RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            E     F  + +    P L T+N L+S CA+    + A  V + + E G+  +   Y+ 
Sbjct: 235 WEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSY 294

Query: 133 LITTCAKSGKVD--AMF------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           ++ T  K GK++  AM       E   PD   +N LI A  + G++  A DV  +M A  
Sbjct: 295 IVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAA- 353

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
               P+  T   L+      G+ D  RE++  + + + +     Y I I    + G ++ 
Sbjct: 354 -GCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKE 412

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
             +++ D+  + + P+      L+   G  G  E A +IL     +GI     +YS L+ 
Sbjct: 413 VVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIE 472

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
           A   A  + +AL  +  M  +  K T+ T N+LI     G    +   +LS M+  G+  
Sbjct: 473 AYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISR 532

Query: 365 NTITYS 370
           N  ++S
Sbjct: 533 NAKSFS 538



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 174/407 (42%), Gaps = 20/407 (4%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFR 82
           H Y  +I    R+G + +C ++ ++M  +G++     Y A    +    + + +++   R
Sbjct: 149 HIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLER 208

Query: 83  FFKLVPNPTLSTFNMLMSVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
             +   +P + T+N +++ CA    D EG   +   ++  G++ D   Y TL++ CA  G
Sbjct: 209 MKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARG 268

Query: 142 KVD-------AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
             D        M E  + P+   ++ ++   G+ G +++   +L EM +E +   PD  +
Sbjct: 269 LGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYL--PDISS 326

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L++A A  G +  A +V+K +           Y+I +N   + G ++    ++  M 
Sbjct: 327 YNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMK 386

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +    PD    + LI   G  G  +    +  +  ++ I   + +Y  L+ AC      +
Sbjct: 387 ESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHE 446

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A ++  HM    + P+    + LI A        + +   + M  +G      TY+ L+
Sbjct: 447 DAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLI 506

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKA 418
               R    +    +LS+ +E G+  N   F  II     S +YE+A
Sbjct: 507 HTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEA 553



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 156/403 (38%), Gaps = 34/403 (8%)

Query: 21  YAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY---------HARF 67
           Y  D+S    SYN LI    + G I E +D+ + M+  G +     Y         H R+
Sbjct: 320 YLPDIS----SYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRY 375

Query: 68  FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
            +V +    +KE+         P  +T+N+L+ V       +    +   + +  +  + 
Sbjct: 376 DDVRELFLQMKES------SAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNM 429

Query: 128 KLYTTLITTCAKSG-KVDA---MF----ENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
           + Y  L+  C K G   DA   +F    + + P    ++ LI A GQ+   D A      
Sbjct: 430 ETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNT 489

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
           MN        D  T  +L+   A  G       +   + +Y I    + ++  I    Q+
Sbjct: 490 MNEVGSKSTID--TYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQS 547

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G +E A   + +M K     DE  L  ++     AG V+ + E   E K  GI   ++ Y
Sbjct: 548 GQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCY 607

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD-MK 358
             ++   +    W  A EL + M   ++      +  +I    D D   + +E + D + 
Sbjct: 608 CMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLN 667

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
           + G       Y+ LL A            +L++A + G+ P L
Sbjct: 668 AEGCGFGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPEL 710



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 148/412 (35%), Gaps = 84/412 (20%)

Query: 16  GKHANYAHDVSEQL------------HSYNRLIR----QGRISECIDLLEDMERKGLLDM 59
           GKH  Y  DV E               +YN LIR     G   E + L  D+  + +   
Sbjct: 370 GKHGRY-DDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPN 428

Query: 60  DKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116
            + Y    F   K    + A K  F        P+   ++ L+     +   + A     
Sbjct: 429 METYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFN 488

Query: 117 LVQEAGLKADCKLYTTLITTCAKSG---KVDAMFENVKPDRVV-----FNALITACGQSG 168
            + E G K+    Y +LI T A+ G   + +A+   ++   +      F+ +I    QSG
Sbjct: 489 TMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSG 548

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
             + A     EM  E    + D  T+  ++     AG VD ++E +  I    I  +   
Sbjct: 549 QYEEAIKAFVEM--EKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLC 606

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTK--------------KGVIPDEV------------ 262
           Y + +   ++ G W+ A  + D+M K              KG   D+             
Sbjct: 607 YCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKL 666

Query: 263 ----------FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
                     F + L++     G+   A  +L EA  +G+   +   S L+ +    + W
Sbjct: 667 NAEGCGFGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRQSKLVWSVDVHRMW 726

Query: 313 Q----KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           +     A+ L+           V+ MN +   L DG+ LP+   V+    SL
Sbjct: 727 EGGAYTAVSLW-----------VNKMNEM---LMDGEDLPQLAAVVVGRGSL 764


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 173/412 (41%), Gaps = 42/412 (10%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  L+SYN LI    R+ ++   + +L  M + G  + D V  +   N     K I EA
Sbjct: 95  ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGY-EPDIVTLSSLLNGYCHGKRISEA 153

Query: 81  F----RFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
                + F +   P   TFN L+  +   +K SE    + R+V                 
Sbjct: 154 VALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG-------------- 199

Query: 136 TCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                          +PD   +  ++    + G +D A  +L +M  E   ++ D +   
Sbjct: 200 --------------CQPDLFTYGTVVNGLCKRGDIDLALSLLKKM--EKGKIEADVVIYT 243

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++ A  N   V+ A  ++  +    I+     Y   I C    G W  A  +  DM ++
Sbjct: 244 TIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 303

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + P+ V  SALID     GK+  A ++  E   + I   I +YSSL+          +A
Sbjct: 304 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 363

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             ++E M S    P V T N LI   C   ++ + ME+  +M   GL  NT+TY+ L+  
Sbjct: 364 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 423

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
             +  D ++   +  +   DGV P+++ +  ++ G+C   + EKA  + E++
Sbjct: 424 LFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 475



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 173/391 (44%), Gaps = 36/391 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G I   + LL+ ME KG ++ D V +    +   + K + +A   F  + N   
Sbjct: 212 NGLCKRGDIDLALSLLKKME-KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGI 270

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P + T+N L+  +C   + S+ +    RL+                         D + 
Sbjct: 271 RPNVVTYNSLIRCLCNYGRWSDAS----RLLS------------------------DMIE 302

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             + P+ V F+ALI A  + G +  A  +  EM      +DPD  T  +L+       ++
Sbjct: 303 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK--RSIDPDIFTYSSLINGFCMHDRL 360

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A+ +++++   +       Y   I    +    E    ++ +M+++G++ + V  + L
Sbjct: 361 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 420

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I     AG  + A +I ++  + G+   II+YS L+         +KAL ++E+++  K+
Sbjct: 421 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 480

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           +P + T N +I  +C   ++    ++   +   G+ PN I Y+ ++    RK   E    
Sbjct: 481 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 540

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
           L  + KEDG +PN   +  +I    R  +KA
Sbjct: 541 LFREMKEDGTLPNSGTYNTLIRARLRDGDKA 571



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 178/387 (45%), Gaps = 16/387 (4%)

Query: 40  RISECIDLLEDM----ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RISE + L++ M     +   +  + + H  F +  K+ +A+    R       P L T+
Sbjct: 149 RISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLH-NKASEAVALIDRMVARGCQPDLFTY 207

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSGKVDAMF------- 147
             +++      D + A  +L+ +++  ++AD  +YTT+I   C      DA+        
Sbjct: 208 GTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDN 267

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + ++P+ V +N+LI      G    A  +L++M      ++P+ +T  AL+ A    G++
Sbjct: 268 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE--RKINPNVVTFSALIDAFVKEGKL 325

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             A ++Y  + K +I      Y+  IN        + A  +++ M  K   P+ V  + L
Sbjct: 326 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 385

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I     A +VE   E+ +E   +G+    ++Y++L+     A +   A ++++ M S  +
Sbjct: 386 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 445

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P + T + L+  LC   +L K + V   ++   + P+  TY+I++    +   VE G  
Sbjct: 446 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 505

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCSR 413
           L       GV PN++++  +I G C +
Sbjct: 506 LFCSLSLKGVKPNVIIYTTMISGFCRK 532



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 148/342 (43%), Gaps = 21/342 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
           +YN LIR     GR S+   LL DM ERK  ++ + V  +   +    +  + EA + + 
Sbjct: 276 TYNSLIRCLCNYGRWSDASRLLSDMIERK--INPNVVTFSALIDAFVKEGKLVEAEKLYD 333

Query: 85  ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K   +P + T++ L++        + A  +  L+       +   Y TLI    K+ 
Sbjct: 334 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 393

Query: 142 KVDAMFENVKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +V+   E  +         + V +N LI    Q+G  D A  +  +M ++  P  PD IT
Sbjct: 394 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVP--PDIIT 451

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+      G++++A  V++ + K  ++     Y I I    + G  E    ++  ++
Sbjct: 452 YSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 511

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            KGV P+ +  + +I      G  E A  + +E K  G      +Y++L+ A     +  
Sbjct: 512 LKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKA 571

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
            + EL + M+S       ST++ +I  L DG      +E+LS
Sbjct: 572 ASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLEMLS 613



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 117/272 (43%), Gaps = 13/272 (4%)

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D A D+  EM  +  P+ P  +    L+ A A   + D    + + +    I      Y
Sbjct: 45  LDDAVDLFGEM-VQSRPL-PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSY 102

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
            I INC  +      A +V   M K G  PD V LS+L++   H  ++  A  ++ +   
Sbjct: 103 NILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFV 162

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
                  +++++L+          +A+ L + M +   +P + T   ++  LC    +  
Sbjct: 163 MEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL 222

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            + +L  M+   +  + + Y+ ++ A     +V   L L ++    G+ PN+V +  +I 
Sbjct: 223 ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 282

Query: 410 -MCSR-RYEKA---------RTLNEHVLSFNS 430
            +C+  R+  A         R +N +V++F++
Sbjct: 283 CLCNYGRWSDASRLLSDMIERKINPNVVTFSA 314



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 97/237 (40%), Gaps = 12/237 (5%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  ++ +M +   +P  V  + L+       K +    + +  +N  IS  + SY+ L+ 
Sbjct: 48  AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILIN 107

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                     AL +   M  +  +P + T+++L+   C G ++ + + ++  M  +   P
Sbjct: 108 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQP 167

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 413
           NT+T++ L+      +     + L+ +    G  P+L  +  ++ G+C R          
Sbjct: 168 NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLL 227

Query: 414 -RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
            + EK +   + V+           K  + AL ++ E    G  P V   + ++ CL
Sbjct: 228 KKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 284


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/462 (23%), Positives = 208/462 (45%), Gaps = 46/462 (9%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ--KAI 77
           D    L +Y+ LI    + G + E + LLE+MER+GL     VY +     C     +  
Sbjct: 180 DCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETG 239

Query: 78  KEAF-RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           +E F    +   +P + T++ LM     +     A ++L+ +   G++ D   YT L   
Sbjct: 240 RELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADG 299

Query: 137 CAKSGK-------VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K+G+       +D M +   +P  + +N ++    +   +D AF V+  M  +     
Sbjct: 300 LCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKK-- 357

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMI--HKYNIKGTPEVYTI--AINCCSQTGDWEF 244
           PD +T   L+K    AG++  A +++K++   K+++K  P+V+T    I    + G    
Sbjct: 358 PDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVK--PDVFTCNNLIQGLCKEGRVHD 415

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  ++  M + G+  + V  + LI+    A K+  A ++ + A   G S   ++YS ++ 
Sbjct: 416 AARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMIN 475

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                +    A  L+  MK   ++PTV   NAL+T+LC  D L +   +  +M+++    
Sbjct: 476 GLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNV 535

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 424
           + ++++I++    +  DV+    LLS+     ++P+ V F  +I     R+ K   L+E 
Sbjct: 536 DVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILIN----RFSKLGMLDE- 590

Query: 425 VLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 466
                             A+ +Y + +  G +P V V   +L
Sbjct: 591 ------------------AMGLYEKMVSCGHVPGVVVFDSLL 614



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 139/333 (41%), Gaps = 49/333 (14%)

Query: 126 DCKLYTTLITTCAKSGKV---DAMFENVK------PDRVVFNALITACGQSGAVDRAFDV 176
           DC  Y TL+    K+ ++     +FE +K      P+ V ++ LI    +SG V     +
Sbjct: 148 DCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGL 207

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
           L EM  E   +  D     +L+ A    G ++  RE++  + +  +      Y+  +   
Sbjct: 208 LEEMERE--GLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGL 265

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALID------FAGHAGKV------------- 277
            +TG W  A  +  DMT +GV PD V  + L D       AG A KV             
Sbjct: 266 GRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGT 325

Query: 278 ----------------EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
                           + AF +++    +G     ++Y++L+     A    +A++L++ 
Sbjct: 326 LTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKL 385

Query: 322 MKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + S K  +KP V T N LI  LC   ++     + S M  +GL  N +TY+ L+      
Sbjct: 386 LLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAA 445

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             +   L L   A E G  PN + +  +I G+C
Sbjct: 446 RKLIEALKLWKYAVESGFSPNSMTYSVMINGLC 478



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 121/257 (47%), Gaps = 2/257 (0%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
            N ++    +SG  D+A  + ++M      V PD +T   L+     A ++  AR +++ 
Sbjct: 115 LNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEA 174

Query: 217 IHKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
           + K  + +     Y++ I+C  ++G+      + ++M ++G+  D    S+LI      G
Sbjct: 175 MKKGGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEG 234

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
            +E   E+  E   + +S  +++YS LM        W++A E+ + M +  ++P V    
Sbjct: 235 DIETGRELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYT 294

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            L   LC   +    ++VL  M   G  P T+TY++++    ++D ++    ++    + 
Sbjct: 295 VLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKK 354

Query: 396 GVIPNLVMFKCII-GMC 411
           G  P+ V +  ++ G+C
Sbjct: 355 GKKPDAVTYNTLLKGLC 371



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 94/424 (22%), Positives = 165/424 (38%), Gaps = 55/424 (12%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  + +Y+ L+    R GR  E  ++L+DM  +G+      Y      +CK+ +A  +A
Sbjct: 251 VSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRA-GDA 309

Query: 81  FRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
            +   L+      P   T+N++++        + AF V+ ++ + G K D   Y TL+  
Sbjct: 310 IKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKG 369

Query: 137 CAKSGKVDAMFE----------NVKPDRVVFNALITACGQSGAVD---RAFDVLAEMNAE 183
              +GK+    +          +VKPD    N LI    + G V    R    + EM  +
Sbjct: 370 LCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQ 429

Query: 184 VHPV------------------------------DPDHITIGALMKACANAGQVDRAREV 213
            + V                               P+ +T   ++        +  AR +
Sbjct: 430 GNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGL 489

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           +  +    I+ T   Y   +    +    E A S++ +M       D V  + +ID    
Sbjct: 490 FCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLK 549

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           AG V++A E+L E     +    +++S L+   S      +A+ LYE M S    P V  
Sbjct: 550 AGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVV 609

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACE--RKDDVEVGLMLLS 390
            ++L+       +  K + +L  M    +  ++ +T +IL   C   R  DVE  L   S
Sbjct: 610 FDSLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTILACLCHMSRNLDVEKILPKFS 669

Query: 391 QAKE 394
           Q  E
Sbjct: 670 QQSE 673



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 77/170 (45%), Gaps = 3/170 (1%)

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
           ++   SVY  M    V+P    LSAL +   +      AF +L     +G  V + + + 
Sbjct: 58  YDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNL 117

Query: 302 LMGACSNAKNWQKALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           ++     +    KA+ L+  MK     + P   T N L+   C   +L +   +   MK 
Sbjct: 118 VLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKK 177

Query: 360 LGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            G C PN +TYS+L+    +  +V  GL LL + + +G+  ++ ++  +I
Sbjct: 178 GGDCRPNLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLI 227


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 158/375 (42%), Gaps = 40/375 (10%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTF 95
           R+ +  +L+E+M  +G+      Y A    +CK ++ + EA    + +      PT+ T+
Sbjct: 89  RVDDARELVEEMLHRGMAANAITYSALVDGLCKCER-LDEAVALVETMAERGCAPTVVTY 147

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-ENVKPDR 154
           N +++           F   R V EA                   G ++ M  E   PD 
Sbjct: 148 NSIIT----------GFCRARRVDEA------------------HGFMEQMVAEGCHPDI 179

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           + + ALI    +S  V R  ++L E+        PD +T   ++     AG   R R+  
Sbjct: 180 ITYTALIGGFCKSRDVGRGLELLGEVTR--RGFTPDIVTYSTVIDGLCKAG---RLRDAV 234

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
            +  + +   T   Y   I    + GD + A  +   M      PD V  + L+      
Sbjct: 235 DIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKM 294

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G+++ A+E+ Q+     +S  +++++SL+         + ALEL E +      PT+ T 
Sbjct: 295 GRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTY 354

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA-K 393
           N ++   C  +Q+ K  E+++D +S G  PNT+TY+IL+  C R    +  L  L Q   
Sbjct: 355 NCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNS 414

Query: 394 EDGVIPNLVMFKCII 408
           E G  P  V    II
Sbjct: 415 EGGPCPTSVAMYAII 429



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 160/382 (41%), Gaps = 49/382 (12%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTF 95
           R+ E + L+E M  +G       Y++     C++++ + EA  F + +     +P + T+
Sbjct: 124 RLDEAVALVETMAERGCAPTVVTYNSIITGFCRARR-VDEAHGFMEQMVAEGCHPDIITY 182

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DA--MFENVK- 151
             L+     S+D     ++L  V   G   D   Y+T+I    K+G++ DA  +FE +  
Sbjct: 183 TALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSC 242

Query: 152 -PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
            P  + +N+LI    ++G +D A  +L +M  +     PD +T   LM A    G++D A
Sbjct: 243 APTAITYNSLIGGYCRAGDMDEAIRLLGKMVDD--KCAPDVVTYTTLMSAFCKMGRLDDA 300

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            E+++ +    +      +T  ++     G  E A  + +++T++G  P     + ++D 
Sbjct: 301 YELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDG 360

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE------------- 317
              A +V  A E++ + +++G     ++Y+ L+  C  A    +AL+             
Sbjct: 361 YCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCP 420

Query: 318 ------------------------LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
                                    YE M      P  +T   ++ ALC   Q  +  E+
Sbjct: 421 TSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHEL 480

Query: 354 LSDMKSLGLCPNTITYSILLVA 375
           L +M   G  P   T   ++ A
Sbjct: 481 LEEMIKYGHTPGPGTCDAVVSA 502



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 142/325 (43%), Gaps = 14/325 (4%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPNPTLSTFNMLMSVCA 103
           ++LL ++ R+G       Y      +CK+ + +++A   F+ +   PT  T+N L+    
Sbjct: 199 LELLGEVTRRGFTPDIVTYSTVIDGLCKAGR-LRDAVDIFEEMSCAPTAITYNSLIGGYC 257

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRV 155
            + D + A ++L  + +     D   YTTL++   K G++D  +E         + PD V
Sbjct: 258 RAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVV 317

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
            F +L+      G ++ A ++L E+     P  P   T   ++     A QV +A E+  
Sbjct: 318 TFTSLVDGLCGEGRMEDALELLEEITRRGCP--PTIYTYNCVVDGYCKANQVRKAEELVA 375

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM-TKKGVIPDEVFLSALI-DFAGH 273
                        Y I +  C + G  + A    D + ++ G  P  V + A+I D    
Sbjct: 376 DFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCR 435

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
            G+ + A +  +E   +G      ++++++ A   A   Q+A EL E M      P   T
Sbjct: 436 DGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGT 495

Query: 334 MNALITALCDGDQLPKTMEVLSDMK 358
            +A+++A C    + K  E+ S+++
Sbjct: 496 CDAVVSAYCRAGMIQKADELASELR 520



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 148/326 (45%), Gaps = 29/326 (8%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           PD + +  L+    ++  +  A  VL EM +  H   PD+ T+  ++++     +VD AR
Sbjct: 37  PDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHV--PDNTTLTVVVQSLCLGDRVDDAR 94

Query: 212 E-VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           E V +M+H+  +      Y+  ++   +    + A ++ + M ++G  P  V  +++I  
Sbjct: 95  ELVEEMLHR-GMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITG 153

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
              A +V+ A   +++   +G    II+Y++L+G    +++  + LEL   +      P 
Sbjct: 154 FCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPD 213

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           + T + +I  LC   +L   +++  +M      P  ITY+ L+    R  D++  + LL 
Sbjct: 214 IVTYSTVIDGLCKAGRLRDAVDIFEEMSCA---PTAITYNSLIGGYCRAGDMDEAIRLLG 270

Query: 391 QAKEDGVIPNLVMFK------CIIGMCSRRYE-----KARTLNEHVLSFNS------GRP 433
           +  +D   P++V +       C +G     YE      A  L+  V++F S      G  
Sbjct: 271 KMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEG 330

Query: 434 QIENKWTSLALMVYREAIVAGTIPTV 459
           ++E+     AL +  E    G  PT+
Sbjct: 331 RMED-----ALELLEEITRRGCPPTI 351



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 10/224 (4%)

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGDWEFACSV 248
           ++ IG L +A    G++  A  VY+ +   N    P+   YT  ++  S+      A  V
Sbjct: 9   NVVIGGLCRA----GRLRHALGVYRQM---NDAHPPDFLTYTKLVHGLSKARRLRDAVQV 61

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
             +M     +PD   L+ ++       +V+ A E+++E  ++G++   I+YS+L+     
Sbjct: 62  LQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCK 121

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            +   +A+ L E M      PTV T N++IT  C   ++ +    +  M + G  P+ IT
Sbjct: 122 CERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIIT 181

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           Y+ L+    +  DV  GL LL +    G  P++V +  +I G+C
Sbjct: 182 YTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLC 225


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 177/413 (42%), Gaps = 42/413 (10%)

Query: 6   KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY-- 63
           ++++QF Y   K   Y H+++  +   NRL+R                      D+V+  
Sbjct: 89  ESVIQFFYWISKRPFYKHNMNCFISMLNRLVR----------------------DRVFAP 126

Query: 64  --HARFFNV--CKSQKAIKEAFRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVL 115
             H R   +  C++++ I+    F   +       +L + N L+   A  +  EGA  + 
Sbjct: 127 ADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLY 186

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKV-------DAMFE-NVKPDRVVFNALITACGQS 167
           + +  +G++     + TLI   +K GKV         +F+ ++ PD   + +LI    ++
Sbjct: 187 KQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRN 246

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
             +D AF V   M  E    DP+ +T   L+    N G+VD A ++ + + +  I+ T  
Sbjct: 247 RNLDLAFGVFDRMVKE--GCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVY 304

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            YT+ I         E A  +   M K+G  P+    +ALI      GK+E A  +  + 
Sbjct: 305 TYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKM 364

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
             +G+    ++Y++L+        +  AL+++  M+         T N +I  LC G  +
Sbjct: 365 LKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDI 424

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
            K M +   M  +G  P  +TY+ L+     K +V     LL   KE+G  P+
Sbjct: 425 EKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPD 477



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 165/387 (42%), Gaps = 13/387 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RFFKLVPN 89
           N L  +GR+ E +D+LE+M  KG+      Y      +C  +   +      R  K    
Sbjct: 276 NGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCR 335

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P + T+  L+S  +     E A  +   + + GL  +   Y  LI      G+      +
Sbjct: 336 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 395

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F  ++      +   +N +I      G +++A  VL E   ++ P+ P  +T   L+   
Sbjct: 396 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAM-VLFEKMLKMGPL-PTVVTYNTLINGY 453

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G V+ A  +  ++ +   +     Y   ++  S+ G  E A   + +M + G+ P+ 
Sbjct: 454 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNP 513

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  +ALID     GKV+ A  +L+  +  G +  + SY++++   S    + +A ++ + 
Sbjct: 514 VSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDK 573

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    L P V T   LI  LC   +     ++  DM+     PN  TYS L+    ++  
Sbjct: 574 MVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGK 633

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
            +   +LL + +  G+ P+ V F  +I
Sbjct: 634 ADEAEILLKEMERKGLAPDEVTFTSLI 660



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 158/357 (44%), Gaps = 38/357 (10%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRF 83
           +YN LI +    GR S  + +   ME  G L   + Y+     +C     +KA+    + 
Sbjct: 375 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 434

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K+ P PT+ T+N L++   +  +   A ++L L++E G + D   Y  L++  +K GK+
Sbjct: 435 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 494

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           ++           F  ++  CG                     ++P+ ++  AL+   + 
Sbjct: 495 ESA-------SFYFQEMV-ECG---------------------LNPNPVSYTALIDGHSK 525

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G+VD A  + K + +       E Y   IN  S+   +  A  + D M ++G++P+ + 
Sbjct: 526 DGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVIT 585

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHM 322
            + LID     G+ + AF+I  + + +     + +YSSL+ G C   K  +  + L E M
Sbjct: 586 YTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKE-M 644

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           +   L P   T  +LI       ++     +L  M  +G  PN  TYS+LL   +++
Sbjct: 645 ERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQKE 701



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 94/445 (21%), Positives = 182/445 (40%), Gaps = 34/445 (7%)

Query: 101 VCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNA 159
           + A  KD+E   Q    + +    K +   + +++    +    D +F      R++   
Sbjct: 81  IVAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVR----DRVFAPADHIRIL--- 133

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
           +I AC     + R  D L E++           +   L+   A    V+ AR +YK +  
Sbjct: 134 MIKACRNEEEIRRVADFLNEISG--MGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLN 191

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
             I+ +   +   IN  S+ G    A  +   + +  + PD    ++LI        ++ 
Sbjct: 192 SGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDL 251

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           AF +      +G     ++YS+L+    N     +AL++ E M    ++PTV T    IT
Sbjct: 252 AFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPIT 311

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
           ALC  +   + +E+++ MK  G  PN  TY+ L+    R   +EV + L  +  ++G++P
Sbjct: 312 ALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVP 371

Query: 400 NLVMFKCIIG-MC-SRRYEKARTLNEHVLSFNSGRPQIENKWT--------------SLA 443
           N V +  +I  +C   R+  A      +  +  G   + N  T                A
Sbjct: 372 NTVTYNALINELCVGGRFSTALK----IFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKA 427

Query: 444 LMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSL 500
           ++++ + +  G +PTV   + ++       N +   RL++ +   G   D    + L S 
Sbjct: 428 MVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSG 487

Query: 501 IDGFGEYDPRAFSLLEEAASFGIVP 525
              +G+ +  +F   +E    G+ P
Sbjct: 488 FSKWGKLESASF-YFQEMVECGLNP 511


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/412 (24%), Positives = 173/412 (41%), Gaps = 42/412 (10%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  L+SYN LI    R+ ++   + +L  M + G  + D V  +   N     K I EA
Sbjct: 111 ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGY-EPDIVTLSSLLNGYCHGKRISEA 169

Query: 81  F----RFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
                + F +   P   TFN L+  +   +K SE    + R+V                 
Sbjct: 170 VALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG-------------- 215

Query: 136 TCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                          +PD   +  ++    + G +D A  +L +M  E   ++ D +   
Sbjct: 216 --------------CQPDLFTYGTVVNGLCKRGDIDLALSLLKKM--EKGKIEADVVIYT 259

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++ A  N   V+ A  ++  +    I+     Y   I C    G W  A  +  DM ++
Sbjct: 260 TIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 319

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + P+ V  SALID     GK+  A ++  E   + I   I +YSSL+          +A
Sbjct: 320 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 379

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             ++E M S    P V T N LI   C   ++ + ME+  +M   GL  NT+TY+ L+  
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 439

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
             +  D ++   +  +   DGV P+++ +  ++ G+C   + EKA  + E++
Sbjct: 440 LFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 491



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 173/391 (44%), Gaps = 36/391 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L ++G I   + LL+ ME KG ++ D V +    +   + K + +A   F  + N   
Sbjct: 228 NGLCKRGDIDLALSLLKKME-KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGI 286

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P + T+N L+  +C   + S+ +    RL+                         D + 
Sbjct: 287 RPNVVTYNSLIRCLCNYGRWSDAS----RLLS------------------------DMIE 318

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             + P+ V F+ALI A  + G +  A  +  EM      +DPD  T  +L+       ++
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK--RSIDPDIFTYSSLINGFCMHDRL 376

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A+ +++++   +       Y   I    +    E    ++ +M+++G++ + V  + L
Sbjct: 377 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 436

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I     AG  + A +I ++  + G+   II+YS L+         +KAL ++E+++  K+
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           +P + T N +I  +C   ++    ++   +   G+ PN I Y+ ++    RK   E    
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
           L  + KEDG +PN   +  +I    R  +KA
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRDGDKA 587



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 178/387 (45%), Gaps = 16/387 (4%)

Query: 40  RISECIDLLEDM----ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
           RISE + L++ M     +   +  + + H  F +  K+ +A+    R       P L T+
Sbjct: 165 RISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLH-NKASEAVALIDRMVARGCQPDLFTY 223

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSGKVDAMF------- 147
             +++      D + A  +L+ +++  ++AD  +YTT+I   C      DA+        
Sbjct: 224 GTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDN 283

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + ++P+ V +N+LI      G    A  +L++M      ++P+ +T  AL+ A    G++
Sbjct: 284 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE--RKINPNVVTFSALIDAFVKEGKL 341

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             A ++Y  + K +I      Y+  IN        + A  +++ M  K   P+ V  + L
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I     A +VE   E+ +E   +G+    ++Y++L+     A +   A ++++ M S  +
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P + T + L+  LC   +L K + V   ++   + P+  TY+I++    +   VE G  
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCSR 413
           L       GV PN++++  +I G C +
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRK 548



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 148/342 (43%), Gaps = 21/342 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
           +YN LIR     GR S+   LL DM ERK  ++ + V  +   +    +  + EA + + 
Sbjct: 292 TYNSLIRCLCNYGRWSDASRLLSDMIERK--INPNVVTFSALIDAFVKEGKLVEAEKLYD 349

Query: 85  ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K   +P + T++ L++        + A  +  L+       +   Y TLI    K+ 
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409

Query: 142 KVDAMFENVKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +V+   E  +         + V +N LI    Q+G  D A  +  +M ++  P  PD IT
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVP--PDIIT 467

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+      G++++A  V++ + K  ++     Y I I    + G  E    ++  ++
Sbjct: 468 YSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 527

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            KGV P+ +  + +I      G  E A  + +E K  G      +Y++L+ A     +  
Sbjct: 528 LKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKA 587

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
            + EL + M+S       ST++ +I  L DG      +E+LS
Sbjct: 588 ASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLEMLS 629



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 117/272 (43%), Gaps = 13/272 (4%)

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D A D+  EM  +  P+ P  +    L+ A A   + D    + + +    I      Y
Sbjct: 61  LDDAVDLFGEM-VQSRPL-PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSY 118

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
            I INC  +      A +V   M K G  PD V LS+L++   H  ++  A  ++ +   
Sbjct: 119 NILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFV 178

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
                  +++++L+          +A+ L + M +   +P + T   ++  LC    +  
Sbjct: 179 MEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL 238

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            + +L  M+   +  + + Y+ ++ A     +V   L L ++    G+ PN+V +  +I 
Sbjct: 239 ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 298

Query: 410 -MCSR-RYEKA---------RTLNEHVLSFNS 430
            +C+  R+  A         R +N +V++F++
Sbjct: 299 CLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/237 (18%), Positives = 97/237 (40%), Gaps = 12/237 (5%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  ++ +M +   +P  V  + L+       K +    + +  +N  IS  + SY+ L+ 
Sbjct: 64  AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILIN 123

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                     AL +   M  +  +P + T+++L+   C G ++ + + ++  M  +   P
Sbjct: 124 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQP 183

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 413
           NT+T++ L+      +     + L+ +    G  P+L  +  ++ G+C R          
Sbjct: 184 NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLL 243

Query: 414 -RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
            + EK +   + V+           K  + AL ++ E    G  P V   + ++ CL
Sbjct: 244 KKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300


>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Cucumis sativus]
          Length = 864

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/429 (22%), Positives = 179/429 (41%), Gaps = 29/429 (6%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           +   Y++DV   ++  + L  +G I+ C+D+ ++  R  L D   V     F    ++  
Sbjct: 75  EKGKYSYDVETLINKLSSLPPRGSIARCLDIFKN--RLSLNDFSLV-----FKEFAARGD 127

Query: 77  IKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            + + R FK +       P    + +++S+       E   ++   +   G+      YT
Sbjct: 128 WQRSLRLFKYMQRQIWCKPNEHIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYT 187

Query: 132 TLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRA--FDVLAEMN 181
            LI    ++G+ +   E         V P+ + +N +I AC + G +D      + AEM 
Sbjct: 188 ALINAYGRNGQYETSLELLERMKRERVSPNILTYNTVINACAR-GDLDWEGLLGLFAEMR 246

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
            E   V PD +T   L+ ACA  G  D A  V+K + +  I      Y+  +    + G 
Sbjct: 247 HE--GVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGK 304

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            E    +  +M  +G +PD    + LI+     G ++ A ++ ++ +  G      +YS 
Sbjct: 305 LEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSI 364

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+        +    EL+  MK    +P  +T N LI    +G    + + +  D+    
Sbjct: 365 LLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDEN 424

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
           + PN  TY  L+ AC +    E    +L      G++P+   +  +I      Y +A   
Sbjct: 425 IDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLI----EAYGQAALY 480

Query: 422 NEHVLSFNS 430
           +E +++FN+
Sbjct: 481 DEALVAFNT 489



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 157/366 (42%), Gaps = 20/366 (5%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           +  V   + SY  LI    R G+    ++LLE M+R+ +      Y+    N C      
Sbjct: 176 SQGVIRSVFSYTALINAYGRNGQYETSLELLERMKRERVSPNILTYNT-VINACARGDLD 234

Query: 78  KEAF-RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            E     F  + +    P L T+N L+S CA+    + A  V + + E G+  +   Y+ 
Sbjct: 235 WEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSY 294

Query: 133 LITTCAKSGKVD--AMF------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           ++ T  K GK++  AM       E   PD   +N LI A  + G++  A DV  +M A  
Sbjct: 295 IVETFGKLGKLEKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAA- 353

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
               P+  T   L+      G+ D  RE++  + + + +     Y I I    + G ++ 
Sbjct: 354 -GCVPNASTYSILLNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKE 412

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
             +++ D+  + + P+      L+   G  G  E A +IL     +GI     +YS L+ 
Sbjct: 413 VVTLFHDLVDENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIE 472

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
           A   A  + +AL  +  M  +  K T+ T N+LI     G    +   +LS M+  G+  
Sbjct: 473 AYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISR 532

Query: 365 NTITYS 370
           N  ++S
Sbjct: 533 NAKSFS 538



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/407 (21%), Positives = 174/407 (42%), Gaps = 20/407 (4%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFR 82
           H Y  +I    R+G + +C ++ ++M  +G++     Y A    +    + + +++   R
Sbjct: 149 HIYTIIISLLGREGLLEKCSEIFDEMASQGVIRSVFSYTALINAYGRNGQYETSLELLER 208

Query: 83  FFKLVPNPTLSTFNMLMSVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
             +   +P + T+N +++ CA    D EG   +   ++  G++ D   Y TL++ CA  G
Sbjct: 209 MKRERVSPNILTYNTVINACARGDLDWEGLLGLFAEMRHEGVQPDLVTYNTLLSACAARG 268

Query: 142 KVD-------AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
             D        M E  + P+   ++ ++   G+ G +++   +L EM +E +   PD  +
Sbjct: 269 LGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYL--PDISS 326

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L++A A  G +  A +V+K +           Y+I +N   + G ++    ++  M 
Sbjct: 327 YNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRYDDVRELFLQMK 386

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +    PD    + LI   G  G  +    +  +  ++ I   + +Y  L+ AC      +
Sbjct: 387 ESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNMETYEGLVFACGKGGLHE 446

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A ++  HM    + P+    + LI A        + +   + M  +G      TY+ L+
Sbjct: 447 DAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNTMNEVGSKSTIDTYNSLI 506

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKA 418
               R    +    +LS+ +E G+  N   F  II     S +YE+A
Sbjct: 507 HTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSGQYEEA 553



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 156/403 (38%), Gaps = 34/403 (8%)

Query: 21  YAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY---------HARF 67
           Y  D+S    SYN LI    + G I E +D+ + M+  G +     Y         H R+
Sbjct: 320 YLPDIS----SYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSILLNLYGKHGRY 375

Query: 68  FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
            +V +    +KE+         P  +T+N+L+ V       +    +   + +  +  + 
Sbjct: 376 DDVRELFLQMKES------SAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPNM 429

Query: 128 KLYTTLITTCAKSG-KVDA---MF----ENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
           + Y  L+  C K G   DA   +F    + + P    ++ LI A GQ+   D A      
Sbjct: 430 ETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFNT 489

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
           MN        D  T  +L+   A  G       +   + +Y I    + ++  I    Q+
Sbjct: 490 MNEVGSKSTID--TYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQS 547

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G +E A   + +M K     DE  L  ++     AG V+ + E   E K  GI   ++ Y
Sbjct: 548 GQYEEAIKAFVEMEKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLCY 607

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD-MK 358
             ++   +    W  A EL + M   ++      +  +I    D D   + +E + D + 
Sbjct: 608 CMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKLN 667

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
           + G       Y+ LL A            +L++A + G+ P L
Sbjct: 668 AEGCGFGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPEL 710



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 148/412 (35%), Gaps = 84/412 (20%)

Query: 16  GKHANYAHDVSEQL------------HSYNRLIR----QGRISECIDLLEDMERKGLLDM 59
           GKH  Y  DV E               +YN LIR     G   E + L  D+  + +   
Sbjct: 370 GKHGRY-DDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEVVTLFHDLVDENIDPN 428

Query: 60  DKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116
            + Y    F   K    + A K  F        P+   ++ L+     +   + A     
Sbjct: 429 METYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDEALVAFN 488

Query: 117 LVQEAGLKADCKLYTTLITTCAKSG---KVDAMFENVKPDRVV-----FNALITACGQSG 168
            + E G K+    Y +LI T A+ G   + +A+   ++   +      F+ +I    QSG
Sbjct: 489 TMNEVGSKSTIDTYNSLIHTFARGGLYKEFEAILSRMREYGISRNAKSFSGIIEGYRQSG 548

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
             + A     EM  E    + D  T+  ++     AG VD ++E +  I    I  +   
Sbjct: 549 QYEEAIKAFVEM--EKMRCELDEQTLEGVLGVYCFAGLVDESKEQFIEIKASGILPSVLC 606

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTK--------------KGVIPDEV------------ 262
           Y + +   ++ G W+ A  + D+M K              KG   D+             
Sbjct: 607 YCMMLAVYAKNGRWDDASELLDEMIKTRVSSIHQVIGQMIKGDYDDDSNWQMVEYVFDKL 666

Query: 263 ----------FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
                     F + L++     G+   A  +L EA  +G+   +   S L+ +    + W
Sbjct: 667 NAEGCGFGMRFYNTLLEALWWLGQKGRAARVLTEATKRGLFPELFRQSKLVWSVDVHRMW 726

Query: 313 Q----KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           +     A+ L+           V+ MN +   L DG+ LP+   V+    SL
Sbjct: 727 EGGAYTAVSLW-----------VNKMNEM---LMDGEDLPQLAAVVVGRGSL 764


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 171/390 (43%), Gaps = 16/390 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF---FKLVPNPT 91
           L ++G + E   LL  + ++G+      Y+     +C++ + + EA R     +    P 
Sbjct: 196 LCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR-LPEAVRLVDGMRAYAVPD 254

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
           + T+N L+  +C  S   E A   LR +   G   D   Y T+I    K   V       
Sbjct: 255 VVTYNTLIRGLCKKSMPQE-AMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELL 313

Query: 144 -DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
            DA+F+   PD+V + +LI      G V+RA ++  E  A+   + PD +   +L+K   
Sbjct: 314 KDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE--AQAKGIKPDIVVYNSLVKGLC 371

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G +  A +V   + +       + Y I IN   + G+   A  V +D   KG +PD  
Sbjct: 372 LQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVF 431

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + LID      K+++A ++++     GI+   I+Y+S++     A    +  E ++ M
Sbjct: 432 TFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 491

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
                 P   T N LI   C  +++ +  +V+  M   GL P+ ++++ L+    R  D+
Sbjct: 492 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 551

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           E   +L  + +E G       F  +IG  S
Sbjct: 552 EGAYLLFQKLEEKGYSATADTFNTLIGAFS 581



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 162/388 (41%), Gaps = 19/388 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    +   + E  +LL+D   KG +  D+V +    N   ++  ++ A   F  
Sbjct: 292 TYNTIIDGYCKISMVQEATELLKDAVFKGFVP-DQVTYCSLINGLCAEGDVERALELFNE 350

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                  P +  +N L+           A QV+  + E G   D + Y  +I    K G 
Sbjct: 351 AQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGN 410

Query: 143 V--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +        DA+ +   PD   FN LI    +   +D A  ++  M    + + PD IT 
Sbjct: 411 ISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE--YGIAPDTITY 468

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +++     AG+V+   E ++ +        P  Y I I    ++   E A  V   M++
Sbjct: 469 NSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQ 528

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           +G+ PD V  + LI      G +E A+ + Q+ + +G S    ++++L+GA S   N   
Sbjct: 529 EGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHM 588

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ++++ M S   +    T   LI   C    + +    L +M   G  P+  T+  ++ 
Sbjct: 589 AEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVIN 648

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLV 402
           +      V   + ++    + GV+P +V
Sbjct: 649 SLTVNHRVFQAVGIIHIMVKIGVVPEVV 676



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 166/397 (41%), Gaps = 25/397 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN LIR    +    E +  L  M  +G L  D  Y+      CK    ++EA    K 
Sbjct: 257 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKI-SMVQEATELLKD 315

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                 VP+    T+  L++   +  D E A ++    Q  G+K D  +Y +L+      
Sbjct: 316 AVFKGFVPDQV--TYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ 373

Query: 141 GKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G +        +   E   PD   +N +I    + G +  A  V+ +  A +    PD  
Sbjct: 374 GLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMND--AIMKGYLPDVF 431

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+       ++D A ++ + + +Y I      Y   +N   + G        + +M
Sbjct: 432 TFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 491

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKN 311
             KG  P+ +  + LI+    + K+E A +++ +   +G+    +S+++L+ G C N  +
Sbjct: 492 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNG-D 550

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            + A  L++ ++      T  T N LI A      +    ++  +M S G   ++ TY +
Sbjct: 551 LEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRV 610

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L+    +  +V+   M L +  + G IP++  F  +I
Sbjct: 611 LIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVI 647



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 128/324 (39%), Gaps = 44/324 (13%)

Query: 130 YTTLITTCAKSGKVDAMFENVKPDRV---------VFNALITACGQSGAVDRAFDVLAEM 180
           Y  LI   A +G+VDA+   V   R          ++ A I A  ++G +  A D    M
Sbjct: 17  YCALIRPLASAGRVDAVDAAVASARSRLSPATIHPLYVASIRAYARAGRLRDAVDAFERM 76

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KM--------IHKYNIK-------G 224
           +    P  P      A+M A  +A   D+A +VY +M        +H + I+        
Sbjct: 77  DLFACP--PAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTA 134

Query: 225 TPEV---------------YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
            P +               Y   +      G    A  ++D M    V P+    + ++ 
Sbjct: 135 RPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLH 194

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G V  A  +L +   +G+S+ + +Y+  +     A    +A+ L + M++  + P
Sbjct: 195 ALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-P 253

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            V T N LI  LC      + M  L  M + G  P+  TY+ ++    +   V+    LL
Sbjct: 254 DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELL 313

Query: 390 SQAKEDGVIPNLVMFKCII-GMCS 412
             A   G +P+ V +  +I G+C+
Sbjct: 314 KDAVFKGFVPDQVTYCSLINGLCA 337


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 171/390 (43%), Gaps = 16/390 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF---FKLVPNPT 91
           L ++G + E   LL  + ++G+      Y+     +C++ + + EA R     +    P 
Sbjct: 197 LCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGR-LPEAVRLVDGMRAYAVPD 255

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
           + T+N L+  +C  S   E A   LR +   G   D   Y T+I    K   V       
Sbjct: 256 VVTYNTLIRGLCKKSMPQE-AMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELL 314

Query: 144 -DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
            DA+F+   PD+V + +LI      G V+RA ++  E  A+   + PD +   +L+K   
Sbjct: 315 KDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE--AQAKGIKPDIVVYNSLVKGLC 372

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G +  A +V   + +       + Y I IN   + G+   A  V +D   KG +PD  
Sbjct: 373 LQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVF 432

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + LID      K+++A ++++     GI+   I+Y+S++     A    +  E ++ M
Sbjct: 433 TFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 492

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
                 P   T N LI   C  +++ +  +V+  M   GL P+ ++++ L+    R  D+
Sbjct: 493 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 552

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           E   +L  + +E G       F  +IG  S
Sbjct: 553 EGAYLLFQKLEEKGYSATADTFNTLIGAFS 582



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 88/388 (22%), Positives = 162/388 (41%), Gaps = 19/388 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    +   + E  +LL+D   KG +  D+V +    N   ++  ++ A   F  
Sbjct: 293 TYNTIIDGYCKISMVQEATELLKDAVFKGFVP-DQVTYCSLINGLCAEGDVERALELFNE 351

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                  P +  +N L+           A QV+  + E G   D + Y  +I    K G 
Sbjct: 352 AQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGN 411

Query: 143 V--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +        DA+ +   PD   FN LI    +   +D A  ++  M    + + PD IT 
Sbjct: 412 ISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWE--YGIAPDTITY 469

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +++     AG+V+   E ++ +        P  Y I I    ++   E A  V   M++
Sbjct: 470 NSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQ 529

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           +G+ PD V  + LI      G +E A+ + Q+ + +G S    ++++L+GA S   N   
Sbjct: 530 EGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHM 589

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ++++ M S   +    T   LI   C    + +    L +M   G  P+  T+  ++ 
Sbjct: 590 AEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVIN 649

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLV 402
           +      V   + ++    + GV+P +V
Sbjct: 650 SLTVNHRVFQAVGIIHIMVKIGVVPEVV 677



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 166/397 (41%), Gaps = 25/397 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN LIR    +    E +  L  M  +G L  D  Y+      CK    ++EA    K 
Sbjct: 258 TYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKI-SMVQEATELLKD 316

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                 VP+    T+  L++   +  D E A ++    Q  G+K D  +Y +L+      
Sbjct: 317 AVFKGFVPDQV--TYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ 374

Query: 141 GKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G +        +   E   PD   +N +I    + G +  A  V+ +  A +    PD  
Sbjct: 375 GLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMND--AIMKGYLPDVF 432

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+       ++D A ++ + + +Y I      Y   +N   + G        + +M
Sbjct: 433 TFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEM 492

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKN 311
             KG  P+ +  + LI+    + K+E A +++ +   +G+    +S+++L+ G C N  +
Sbjct: 493 ILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNG-D 551

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            + A  L++ ++      T  T N LI A      +    ++  +M S G   ++ TY +
Sbjct: 552 LEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRV 611

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L+    +  +V+   M L +  + G IP++  F  +I
Sbjct: 612 LIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVI 648



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 128/324 (39%), Gaps = 44/324 (13%)

Query: 130 YTTLITTCAKSGKVDAMFENVKPDRV---------VFNALITACGQSGAVDRAFDVLAEM 180
           Y  LI   A +G+VDA+   V   R          ++ A I A  ++G +  A D    M
Sbjct: 18  YCALIRPLASAGRVDAVDAAVASARSRLSPATIHPLYVASIRAYARAGRLRDAVDAFERM 77

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KM--------IHKYNIK-------G 224
           +    P  P      A+M A  +A   D+A +VY +M        +H + I+        
Sbjct: 78  DLFACP--PAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTA 135

Query: 225 TPEV---------------YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
            P +               Y   +      G    A  ++D M    V P+    + ++ 
Sbjct: 136 RPHIALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLH 195

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G V  A  +L +   +G+S+ + +Y+  +     A    +A+ L + M++  + P
Sbjct: 196 ALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-P 254

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            V T N LI  LC      + M  L  M + G  P+  TY+ ++    +   V+    LL
Sbjct: 255 DVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELL 314

Query: 390 SQAKEDGVIPNLVMFKCII-GMCS 412
             A   G +P+ V +  +I G+C+
Sbjct: 315 KDAVFKGFVPDQVTYCSLINGLCA 338


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 176/392 (44%), Gaps = 26/392 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFF----KLVPN 89
           L  +GR+ E + LL +   +G    D+V +    N +CK  K  ++A + F    K+   
Sbjct: 150 LCLKGRVLEAVSLLHEYVDRGF-RFDEVCYGTIINGLCKIGKT-RDAIQMFPKMKKIRVY 207

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P L  +N ++  +C      E       +V E G++ D   Y ++I      G+  A  +
Sbjct: 208 PNLIMYNTVIDGLCKQGLVDEACGLCTEMV-ENGIELDVYSYNSMIHGFCSVGRFQAAVK 266

Query: 149 ---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                     V PD   FN LI    + G V  A++V+A M        PD ++  ALM 
Sbjct: 267 LLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKR--GWKPDIVSYNALMN 324

Query: 200 ACANAGQVDRAREVY-KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKG 256
               +G V  A++V+ KM+ +      P V  Y   IN   +    + A  +  +M  K 
Sbjct: 325 GYCLSGSVGEAKQVFDKMVER---TALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKN 381

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           ++PD V  + L+D    +G+    +++++  +  G    +I+Y+ L+      + + KAL
Sbjct: 382 LVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKAL 441

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            L++H+  I + P + T N L+  LC   +L    E+   + + G  PN  TY+I++   
Sbjct: 442 ALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGL 501

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            ++  ++    LL +   +  +PN + F  I+
Sbjct: 502 CKEGFLDEAEALLYKMVNNNYLPNYITFDTIV 533



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 131/313 (41%), Gaps = 47/313 (15%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           +KP  + F+ LI A  Q G +  AF +L  +      +D   +T   LMK     G   R
Sbjct: 101 IKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQIDVRILT--TLMKGLCLKG---R 155

Query: 210 AREVYKMIHKYNIKGT--PEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
             E   ++H+Y  +G    EV Y   IN   + G    A  ++  M K  V P+ +  + 
Sbjct: 156 VLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNT 215

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI- 325
           +ID     G V+ A  +  E    GI + + SY+S++    +   +Q A++L + M    
Sbjct: 216 VIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRG 275

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLS---------DMKSL-----GLC-------- 363
           K+ P V T N LI  LC   ++ +   V++         D+ S      G C        
Sbjct: 276 KVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEA 335

Query: 364 -------------PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
                        PN I+Y  L+    +   V+  ++LL++     ++P+ V + C++  
Sbjct: 336 KQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDG 395

Query: 411 CSRRYEKARTLNE 423
            S+     R+L E
Sbjct: 396 LSK---SGRSLYE 405


>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
 gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
          Length = 558

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/392 (22%), Positives = 177/392 (45%), Gaps = 31/392 (7%)

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           R   +  S K     FR+ K+  N       + M++ + A     + A  +   +QE   
Sbjct: 125 REITISGSLKHAVHVFRWMKIQENYCARNDIYGMMIRLHARHNQVDQARGLFFEMQEWRC 184

Query: 124 KADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFD 175
           K D   Y +LI   A++G+         D     + P R  +N +I ACG +G   +A +
Sbjct: 185 KPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNNVINACGAAGNWKKALE 244

Query: 176 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
           +  +M    + V PD IT   ++ A  N  Q  +A   ++++    +        I I+C
Sbjct: 245 LCKKMTE--NGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHC 302

Query: 236 CSQTGDWEFACSVYDDMTKKGVI--PDEVFLSALI---DFAGHAGKVEAAFEILQEAKNQ 290
             +   +  A  +++ M ++  I  PD V  ++++      G A   +A F+++     +
Sbjct: 303 LVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVA---E 359

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G+   I+SY++L+GA ++     +ALE ++ +K    KP + +  +L+ A        K 
Sbjct: 360 GVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKA 419

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
            EV ++M+     PN ++Y+ L+ A      ++  + LL + ++DG+ P+++    ++  
Sbjct: 420 REVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTA 479

Query: 411 CSRRYE-----------KARTLNEHVLSFNSG 431
           C R  +           K+R +  + +++NSG
Sbjct: 480 CGRCRQPTKIGIILAAAKSRGIQLNTVAYNSG 511



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 165/364 (45%), Gaps = 27/364 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R G+    I++++DM+R  +      Y+    N C +    K+A    K 
Sbjct: 190 TYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYN-NVINACGAAGNWKKALELCKK 248

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTL--ITTCAK 139
           +      P L T N+++S   +      A     +++ + +  D C +   +  +   A 
Sbjct: 249 MTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCTMNIVIHCLVKVAL 308

Query: 140 SGKVDAMFENVK-------PDRVVFNALI---TACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            G+   +F +++       PD V + +++   + CGQ+      FD++         V P
Sbjct: 309 YGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMV-----AEGVRP 363

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           + ++  AL+ A A+ G    A E +K++ +   K     YT  +N   ++   E A  V+
Sbjct: 364 NIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVF 423

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           ++M K    P++V  +ALID  G AG ++ A  +L E +  GI   +IS S+L+ AC   
Sbjct: 424 NEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRC 483

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
           +   K   +    KS  ++      N+ I +        K +E+ + M++  + P+ +TY
Sbjct: 484 RQPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSMRTGNVKPDAVTY 543

Query: 370 SILL 373
           +IL+
Sbjct: 544 NILI 547



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 123/258 (47%), Gaps = 3/258 (1%)

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           R  F  LI     SG++  A  V   M  + +    + I  G +++  A   QVD+AR +
Sbjct: 117 RRNFPLLIREITISGSLKHAVHVFRWMKIQENYCARNDI-YGMMIRLHARHNQVDQARGL 175

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           +  + ++  K   + Y   I+  ++ G W +A ++ DDM +  + P     + +I+  G 
Sbjct: 176 FFEMQEWRCKPDTDTYNSLIHAHARAGQWRWAINIMDDMQRAAIPPSRTTYNNVINACGA 235

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           AG  + A E+ ++    G+   +I+++ ++ A  N   + KA+  +E MKS K+ P   T
Sbjct: 236 AGNWKKALELCKKMTENGVGPDLITHNIVLSAFKNGAQYSKAIAYFEIMKSSKVAPDTCT 295

Query: 334 MNALITALCDGDQLPKTMEVLSDMKS-LGLC-PNTITYSILLVACERKDDVEVGLMLLSQ 391
           MN +I  L       + +E+ + M+    +C P+ +TY+ ++ +       E    +   
Sbjct: 296 MNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDM 355

Query: 392 AKEDGVIPNLVMFKCIIG 409
              +GV PN+V +  ++G
Sbjct: 356 MVAEGVRPNIVSYNALLG 373



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 99/254 (38%), Gaps = 50/254 (19%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARF---FNVCKSQKAIKEAFRFFKLVP-N 89
           L++     E I+L   M ER+ +   D V +      ++VC   +  K  F         
Sbjct: 303 LVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQAENCKAVFDMMVAEGVR 362

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
           P + ++N L+   AS      A +  +L+++ G K D   YT+L+    +S    K   +
Sbjct: 363 PNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREV 422

Query: 147 FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F  +     KP++V +NALI A G +G +  A  +L EM  E   + PD I+I  L+ AC
Sbjct: 423 FNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEM--EQDGIQPDVISISTLLTAC 480

Query: 202 ANA-----------------------------------GQVDRAREVYKMIHKYNIKGTP 226
                                                 G   +A E+Y  +   N+K   
Sbjct: 481 GRCRQPTKIGIILAAAKSRGIQLNTVAYNSGIGSYLSLGDYKKALELYTSMRTGNVKPDA 540

Query: 227 EVYTIAINCCSQTG 240
             Y I I+   + G
Sbjct: 541 VTYNILISGSCKLG 554


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 142/327 (43%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P++ T+++LM      +D E    +LR ++  G+K +   YT  I    ++ + D  +  
Sbjct: 228 PSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRI 287

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E  KPD +    LI     +G +  A DV  +M        PD +T   L+   
Sbjct: 288 LAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQ--KPDRVTYITLLDKF 345

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            + G      E++  +           YT  I+   Q G    A  ++D+M +KG++P++
Sbjct: 346 GDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQ 405

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++LI     A +   A E+ +     G      ++   +     +    KA++ YE 
Sbjct: 406 YSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYEL 465

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MKS  + P V   NA++  L    +L     V  ++K++G+ P+TITY++++  C +   
Sbjct: 466 MKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASK 525

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
            +  + +     E+  +P+++    +I
Sbjct: 526 FDEAVKIFYDMIENNCVPDVLAVNSLI 552



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 164/379 (43%), Gaps = 25/379 (6%)

Query: 47  LLEDMERKGLLDMDKVY-HARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSV 101
           LL +ME  G+     VY +     V    K   EA+R    + N    P + T  +L+ V
Sbjct: 252 LLREMEAHGV--KPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQV 309

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG------------KVDAMFEN 149
              +     A  V   ++++  K D   Y TL+     +G            K D   +N
Sbjct: 310 LCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDN 369

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V    V + A+I A  Q G V  A ++  EM  +   + P+  +  +L+     A +   
Sbjct: 370 V----VAYTAVIDALCQVGRVFEALEMFDEMKQK--GIVPEQYSYNSLISGFLKADRFGD 423

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A E++K +  +  K     + + IN   ++G+   A   Y+ M  KG++PD V  +A++ 
Sbjct: 424 ALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLF 483

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
               +G++  A  +  E K  G+S   I+Y+ ++  CS A  + +A++++  M      P
Sbjct: 484 GLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVP 543

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            V  +N+LI  L    +  +   +   +K + L P   TY+ LL    R+  V+  + LL
Sbjct: 544 DVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLL 603

Query: 390 SQAKEDGVIPNLVMFKCII 408
            +       PNL+ +  I+
Sbjct: 604 EEMYHSNYPPNLITYNTIL 622



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/422 (20%), Positives = 167/422 (39%), Gaps = 50/422 (11%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AH V   ++SY   IR      R  E   +L  ME +G    D + H     V      I
Sbjct: 258 AHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGC-KPDVITHTVLIQVLCDAGRI 316

Query: 78  KEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A   F    K    P   T+  L+     + DS+   ++   ++  G   +   YT +
Sbjct: 317 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 376

Query: 134 ITTCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEM----- 180
           I    + G+V     MF+ +K     P++  +N+LI+   ++     A ++   M     
Sbjct: 377 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGP 436

Query: 181 --NAEVH--------------------------PVDPDHITIGALMKACANAGQVDRARE 212
             N   H                           + PD +   A++   A +G++  A+ 
Sbjct: 437 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 496

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           V+  +    +      YT+ I CCS+   ++ A  ++ DM +   +PD + +++LID   
Sbjct: 497 VFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLY 556

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            AG+ + A+ I  + K   +     +Y++L+         ++ + L E M      P + 
Sbjct: 557 KAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 616

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N ++  LC    +   +++L  M + G  P+  +Y+ ++    +++       +  Q 
Sbjct: 617 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 676

Query: 393 KE 394
           K+
Sbjct: 677 KK 678



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 158/378 (41%), Gaps = 46/378 (12%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           K   Y  +V       + L + GR+ E +++ ++M++KG++     Y++      K+ + 
Sbjct: 362 KADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADR- 420

Query: 77  IKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
             +A   FK +    P P   T  + ++    S +S  A Q   L++  G          
Sbjct: 421 FGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG---------- 470

Query: 133 LITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
                            + PD V  NA++    +SG +  A  V  E+ A    V PD I
Sbjct: 471 -----------------IVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKA--MGVSPDTI 511

Query: 193 TIGALMKACANAGQVDRAREV-YKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVY 249
           T   ++K C+ A + D A ++ Y MI    +   P+V  +   I+   + G  + A  ++
Sbjct: 512 TYTMMIKCCSKASKFDEAVKIFYDMIENNCV---PDVLAVNSLIDTLYKAGRGDEAWRIF 568

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
             + +  + P +   + L+   G  GKV+    +L+E  +      +I+Y++++      
Sbjct: 569 YQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKN 628

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
                AL++   M +    P +S+ N +I  L   ++  +   +   MK + L P+  T 
Sbjct: 629 GAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPDYATL 687

Query: 370 SILLVACERKDDVEVGLM 387
             +L +      V++GLM
Sbjct: 688 CTILPSF-----VKIGLM 700



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 80/398 (20%), Positives = 163/398 (40%), Gaps = 27/398 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R+G++ E + LLE+M           Y+     +CK+  A+ +A      
Sbjct: 582 TYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKN-GAVNDALDMLYS 640

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P LS++N ++      +    AF +   +++  L  D   Y TL T      K
Sbjct: 641 MTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPD---YATLCTILPSFVK 696

Query: 143 VDAMFENV------------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           +  M E +            K DR   ++L+    +   ++++ +  AE+ A    +  D
Sbjct: 697 IGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIE-FAEIIAS-SGITLD 754

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
              +  L+K      +   A E+ K    + +     +Y   I         + A  ++ 
Sbjct: 755 DFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFA 814

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M + G  PDE   + L+D  G + ++E   ++ +E   +G     ++Y++++     ++
Sbjct: 815 EMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSR 874

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             ++A++LY ++ S    PT  T   L+  L    ++     + ++M   G   N   Y+
Sbjct: 875 RLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYN 934

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ILL       + E    L     + G+ P++  +  II
Sbjct: 935 ILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIII 972



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 61/275 (22%), Positives = 109/275 (39%), Gaps = 2/275 (0%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +N L+    +SG    A +V   M   V  V P   T   LM A      V+    + + 
Sbjct: 198 YNGLVYFLVKSGFDREALEVYRVMM--VDGVVPSVRTYSVLMVAFGKRRDVETVLWLLRE 255

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           +  + +K     YTI I    Q   ++ A  +   M  +G  PD +  + LI     AG+
Sbjct: 256 MEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGR 315

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           +  A ++  + K        ++Y +L+    +  + Q  +E++  MK+      V    A
Sbjct: 316 ISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTA 375

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           +I ALC   ++ + +E+  +MK  G+ P   +Y+ L+    + D     L L       G
Sbjct: 376 VIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHG 435

Query: 397 VIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 431
             PN       I    +  E  + +  + L  + G
Sbjct: 436 PKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG 470



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 108/250 (43%), Gaps = 21/250 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           ++++  I + I+  E +   G+   D        ++CK +KA+ EA    K   +  +S 
Sbjct: 730 ILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKAL-EAHELVKKFKSFGVSL 788

Query: 95  FNMLMS--VCASSKD-----SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
              L +  +C    +     +EG F  ++   E G   D   Y  L+    KS +++ M 
Sbjct: 789 KTGLYNSLICGLVDENLIDIAEGLFAEMK---ELGCGPDEFTYNLLLDAMGKSMRIEEML 845

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +          +   V +N +I+   +S  +++A D+   + ++     P   T G L+ 
Sbjct: 846 KVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQ--GFSPTPCTYGPLLD 903

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               AG+++ A  ++  + +Y  K    +Y I +N     G+ E  C ++ DM  +G+ P
Sbjct: 904 GLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINP 963

Query: 260 DEVFLSALID 269
           D    + +ID
Sbjct: 964 DIKSYTIIID 973



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
           ++  L+   G  G +   F+++Q    Q +   + +++++ G        + A      M
Sbjct: 130 YMLELMRGHGRVGDMAEVFDVMQR---QIVKANVGTFAAIFGGLGVEGGLRSAPVALPVM 186

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           K   +     T N L+  L       + +EV   M   G+ P+  TYS+L+VA  ++ DV
Sbjct: 187 KEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDV 246

Query: 383 EVGLMLLSQAKEDGVIPNLVMFK-CI--IGMCSRRYEKARTL 421
           E  L LL + +  GV PN+  +  CI  +G   R  E  R L
Sbjct: 247 ETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRIL 288



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           V +AL +A G + A++R F   A      H       +   +++     G+V    EV+ 
Sbjct: 95  VIHALRSADGPAEALER-FRSAARKPRVAHTT----ASCNYMLELMRGHGRVGDMAEVFD 149

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
           ++ +  +K     +          G    A      M + G++ +    + L+ F   +G
Sbjct: 150 VMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSG 209

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
               A E+ +     G+   + +YS LM A    ++ +  L L   M++  +KP V +  
Sbjct: 210 FDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYT 269

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACE 377
             I  L    +  +   +L+ M++ G  P+ IT+++L+ V C+
Sbjct: 270 ICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCD 312


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/408 (23%), Positives = 188/408 (46%), Gaps = 27/408 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L R+G + E   L + ++  G+     +Y+       K+++  + +  + ++     +P 
Sbjct: 327 LCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPD 386

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK 151
             TFN+L+         E + ++L+ +  +GL  D  LY  ++++   +G++D   + ++
Sbjct: 387 CVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQ 446

Query: 152 P--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                      V FN+LI A  ++G  D+AF+    M        P   T  +L+     
Sbjct: 447 ELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVR--CGFTPSSSTCNSLLMGLCR 504

Query: 204 AGQVDRAR-EVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            G +  AR  +Y+M+ K    G P     YT+ ++   +  + E A  ++ +M ++G+ P
Sbjct: 505 KGWLQEARILLYRMLEK----GFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYP 560

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  +ALID    AG VE A+E+  E    G      +Y+SL+    +     +AL+L 
Sbjct: 561 DAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLE 620

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CER 378
           + M+   L     T N +I   C   Q+   +E   DM+ +GL P+  T++IL+   C+ 
Sbjct: 621 KEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKA 680

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL 426
            D V  G  ++++    G+ P++  +   +      Y + R +N+ V+
Sbjct: 681 FDMVGAG-EIVNKMYSCGLDPDITTYNTYM----HGYCRMRKMNQAVI 723



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 162/378 (42%), Gaps = 48/378 (12%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAI-KEAFRFF--KLVPNPTLSTFNMLMSVCA 103
           L +DM  KG    +  ++A     C+  + +  E+      K + +P + TFN+L++ C 
Sbjct: 234 LFKDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILINACC 293

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFENVK-----PDRV 155
               +  A   L L+  +G++     +TT++    + G V     +F+ ++     P+  
Sbjct: 294 IGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAPNAA 353

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           ++N L+    ++  V +A  +  EM      V PD +T   L+      G+++ +  + K
Sbjct: 354 IYNTLMDGYFKAREVAQASLLYEEMRTT--GVSPDCVTFNILVWGHYKYGRIEDSDRLLK 411

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
                                              D+   G+  D      ++     AG
Sbjct: 412 -----------------------------------DLIVSGLFLDSSLYDVMVSSLCWAG 436

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           +++ A ++LQE   +G+++ +++++SL+GA S A    KA E Y  M      P+ ST N
Sbjct: 437 RLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCN 496

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
           +L+  LC    L +   +L  M   G   N + Y++LL    + +++E    L  + KE 
Sbjct: 497 SLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKER 556

Query: 396 GVIPNLVMFKCIIGMCSR 413
           G+ P+ V F  +I   S+
Sbjct: 557 GIYPDAVAFTALIDGLSK 574



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/253 (20%), Positives = 108/253 (42%), Gaps = 4/253 (1%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           V + LI   G +G  ++  D +   +A     + D   +  L++   N G    A EV +
Sbjct: 146 VVSWLIARVG-TGRTNKIVDFMWRNHAMY---ESDFSVLNTLLRGFLNVGMGFEALEVLR 201

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
           M+    ++      TI +    + GD+     ++ DM  KG  P  +  +A+I       
Sbjct: 202 MMRGVGVRPGLSSITILLRLLLRIGDYGSVWKLFKDMIFKGPRPSNLTFNAMICGFCRQH 261

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           +V     +L        S  +++++ L+ AC        A++    M    ++P+V+T  
Sbjct: 262 RVVVGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAIDWLHLMVRSGVEPSVATFT 321

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            ++ ALC    + +  ++   ++ +G+ PN   Y+ L+    +  +V    +L  + +  
Sbjct: 322 TILHALCREGNVVEARKLFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTT 381

Query: 396 GVIPNLVMFKCII 408
           GV P+ V F  ++
Sbjct: 382 GVSPDCVTFNILV 394


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 131/264 (49%), Gaps = 4/264 (1%)

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
             NV P+   FN LI    + G V +A  VL+ M  +   V+P+ +T  +LM       +
Sbjct: 257 LNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQ--GVEPNVVTYTSLMDGYFLVKE 314

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           V++A+ V+  I    +      Y++ IN   +    + A  ++ +M  K + P+ V  S+
Sbjct: 315 VNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSS 374

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 325
           LID    +G++   ++++ E  N+G    II+Y+SL+ G C N +   KA+ L   MK  
Sbjct: 375 LIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQ-VDKAIALLTKMKDE 433

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            ++P +ST   L+  LC   +L     +  D+   G   N   Y++++    ++   +  
Sbjct: 434 GIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEA 493

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIG 409
           L LLSQ +++G +P+ V ++ +I 
Sbjct: 494 LSLLSQMEDNGCMPDAVTYETLIS 517



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 171/385 (44%), Gaps = 52/385 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL-------------------- 129
           P + TFN+L++  +       AF ++  + + G + D                       
Sbjct: 86  PEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNF 145

Query: 130 ---------------YTTLITTCAKSGKVDAMFE---------NVKPDRVVFNALITACG 165
                          Y TLI    KSG+  A  +          V+PD +++ A+I +  
Sbjct: 146 HDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFC 205

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
           +   V  A+D+ +EM   V  + P+ +T  +L+      GQ+  A  +   +   N+   
Sbjct: 206 KDKLVIDAYDLYSEM--IVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNV--N 261

Query: 226 PEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
           P VYT  I I+   + G+ + A SV   M K+GV P+ V  ++L+D      +V  A  +
Sbjct: 262 PNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHV 321

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
                 +G++  + SYS ++      K   +A++L++ M    + P   T ++LI  LC 
Sbjct: 322 FNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCK 381

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
             ++    +++ ++ + G   N ITY+ LL    +   V+  + LL++ K++G+ P++  
Sbjct: 382 SGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMST 441

Query: 404 FKCII-GMCSR-RYEKARTLNEHVL 426
           +  ++ G+C   R + A+ + + +L
Sbjct: 442 YTTLVDGLCKNGRLKDAQRIYQDLL 466



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 125/280 (44%), Gaps = 16/280 (5%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDA 145
           NP + TFN+L+       + + A  VL ++ + G++ +   YT+L+       +  K   
Sbjct: 261 NPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKH 320

Query: 146 MFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +F       V P+   ++ +I    ++  VD A  +  EM+ +   + P+ +T  +L+  
Sbjct: 321 VFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLK--NMTPNTVTYSSLIDG 378

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
              +G   R  +V+ +I + N +G P     Y   +N   +    + A ++   M  +G+
Sbjct: 379 LCKSG---RISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGI 435

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD    + L+D     G+++ A  I Q+   +G  + I  Y+ ++        + +AL 
Sbjct: 436 QPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALS 495

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           L   M+     P   T   LI+AL   ++  K +++L +M
Sbjct: 496 LLSQMEDNGCMPDAVTYETLISALFKNNKNGKAVKLLREM 535



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 179/416 (43%), Gaps = 74/416 (17%)

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-PEVYT- 230
           +F+ +  MN    P+   +  + +L+K       ++  +       +  +KG  PE++T 
Sbjct: 39  SFNHILHMNNHTPPIFEFNKILSSLVK-------MNHFKIAISFSQQMELKGIQPEMFTF 91

Query: 231 -IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL-------------IDFAGH--- 273
            I INC S      FA S+   + K G  PD V ++ L             ++F  H   
Sbjct: 92  NILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIR 151

Query: 274 -------------------AGKVEAAFEILQEAKNQGISV---GIISYSSLMGACSNAKN 311
                              +G+  AA ++L+  K +G+ +    +I Y++++ +    K 
Sbjct: 152 KRFHLDQVSYGTLINGLCKSGETRAALQLLR--KIEGLLLVRPDVIMYTAIIDSFCKDKL 209

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
              A +LY  M   K+ P V T N+LI   C   QL + + +L++M    + PN  T++I
Sbjct: 210 VIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNI 269

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTLNEHVLSFN 429
           L+    ++ +V+    +LS   + GV PN+V +  ++      +   KA+    HV +  
Sbjct: 270 LIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAK----HVFNTI 325

Query: 430 SGR---PQI-----------ENKWTSLALMVYREAIVAGTIP-TVEVVSKVLGCLQLPYN 474
           S R   P +           +NK    A+ +++E  +    P TV   S + G  +    
Sbjct: 326 SLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRI 385

Query: 475 ADIRERL--VENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 528
           +D+ + +  + N G  A+ +  ++L + +    + D +A +LL +    GI P +S
Sbjct: 386 SDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVD-KAIALLTKMKDEGIQPDMS 440


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 182/400 (45%), Gaps = 21/400 (5%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN +I    ++G +++  DL ++M ++G+      Y++    +CK+ +A+ +A 
Sbjct: 216 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKA-RAMDKAE 274

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
            F + + N    P   T+N L+   +S+   + A +V + ++   +  D    + L+ + 
Sbjct: 275 AFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSL 334

Query: 138 AKSGKV-------DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            K GK+       D M  +   PD   +N ++      G +    D+   M  +   + P
Sbjct: 335 CKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD--GIAP 392

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D  T   L+KA AN G +D+A  ++  +  + +K     Y   I    + G  + A   +
Sbjct: 393 DFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 452

Query: 250 DDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           + M  +GV PD+   + LI  F  H G +  A E++ E  N G+ + I+ +SS++     
Sbjct: 453 NQMIDQGVAPDKYAYNCLIQGFCTH-GSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 511

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                 A  +++   ++ L P     + L+   C   ++ K + V   M S G+ PN + 
Sbjct: 512 LGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVV 571

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           Y  L+    +   ++ GL L  +  + G+ P+ +++  II
Sbjct: 572 YCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIII 611



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/411 (20%), Positives = 176/411 (42%), Gaps = 46/411 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+I E  D+ + M  KG  + D   +    N   ++  + +    F L+      P
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQ-NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 392

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN- 149
              TFN+L+   A+    + A  +   +++ G+K D   Y T+I    + GK+D   E  
Sbjct: 393 DFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 452

Query: 150 -------VKPDRVVFNALITACGQSGAVDRAFDVLAE-MNAEVH---------------- 185
                  V PD+  +N LI      G++ +A ++++E MN  +H                
Sbjct: 453 NQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 512

Query: 186 ----------------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
                            + PD +    LM      G++++A  V+  +    I+    VY
Sbjct: 513 GRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVY 572

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
              +N   + G  +   S++ +M ++G+ P  +  S +ID    AG+   A     E   
Sbjct: 573 CTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTE 632

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            GI++ I +Y+ ++      + + +A+ L++ ++++ +K  + T+N +I  +    ++ +
Sbjct: 633 SGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEE 692

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
             ++ + +    L P+ +TYSI++    ++  VE    + S  +  G  PN
Sbjct: 693 AKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 743



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/440 (21%), Positives = 178/440 (40%), Gaps = 64/440 (14%)

Query: 36  IRQG--RISECIDLLEDMERKG--LLDMD------KVYHARFFNVCKSQKAIKEAFRFFK 85
           +R+G  R  E  DLL++++R+G  +L+ D       +  A     C+S  A+  A  F +
Sbjct: 38  VREGTLRPEEAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVAL-FNR 96

Query: 86  L--------VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                    V +PT  T+ +LM  C  +   E A      +   GL+ +  +   L+   
Sbjct: 97  AASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGF 156

Query: 138 AKSGKVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
            ++ + D   +            PD   ++ L+ +    G   +A D+L  M        
Sbjct: 157 CEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCS 216

Query: 189 PDHITIGALMKACANAGQVDRAREVYK-MIHK---------------------------- 219
           P+ +    ++      G V++A +++K M+ +                            
Sbjct: 217 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 276

Query: 220 ----YNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
                N +  P    Y   I   S TG W+ A  V+ +M +  ++PD V LS L+     
Sbjct: 277 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 336

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
            GK++ A ++      +G +  + SY+ ++   +         +L++ M    + P   T
Sbjct: 337 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 396

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            N LI A  +   L K M + ++M+  G+ P+ +TY  ++ A  R   ++  +   +Q  
Sbjct: 397 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 456

Query: 394 EDGVIPNLVMFKCII-GMCS 412
           + GV P+   + C+I G C+
Sbjct: 457 DQGVAPDKYAYNCLIQGFCT 476


>gi|145341746|ref|XP_001415964.1| pentatrichopeptide repeat (PPR) protein [Ostreococcus lucimarinus
           CCE9901]
 gi|144576187|gb|ABO94256.1| pentatrichopeptide repeat (PPR) protein [Ostreococcus lucimarinus
           CCE9901]
          Length = 632

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 195/430 (45%), Gaps = 40/430 (9%)

Query: 4   GGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQ-GRISECIDLLEDMERKGLLDMDKV 62
           G    L F Y  G +AN A  V++     N ++R+   + E + L+++M   GL  ++  
Sbjct: 38  GTDARLSFLYEEGVNANDAGAVTK----CNDVLRRCASMEEVLGLVKEMRDAGLEPVEST 93

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLV 118
           Y A    VC++  + + A + +  +       T  TF++ + +   ++  + A ++   +
Sbjct: 94  YVAVML-VCQNVGSPERAVQVYDAMTEAQVRMTGRTFHLAIELALKAEMFKDALRIKDDM 152

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLA 178
           +  GL    KLY TL+   A +     M +   P       LI  C       R F+ + 
Sbjct: 153 RYVGLPVSSKLYVTLLRALADND----MGKRKGPQ----ERLIRTC-------RLFEEM- 196

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
            +N +V P    + T   L+ A   A Q D A   +  + +  I    + Y  A++  ++
Sbjct: 197 -LNEDVDPAPAAYHT---LIVAAHRANQHDLAVRTFDELIEEGITPARQTYETALDSMAR 252

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--KVEAAFEILQEAKNQG-ISVG 295
           +G    A  V+  M   G++P +V  + L+    +A   +VEAAFEI +E + +G ++  
Sbjct: 253 SGLLAQALEVFVQMKSNGLMPRKVTYNTLLSACVNAPQPRVEAAFEIFEEMQTKGNVTPD 312

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC-----DGDQLPKT 350
             +YS L+ A   A   + A + + HM+   ++  V T+N LI A       D   +  T
Sbjct: 313 RSTYSLLIDAACKAGKPEMAFDAFSHMRDSGIEIQVGTLNRLIHAAGLNAKEDSTSVQAT 372

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
           +E+   MK LG+ P+ ITY  L+  C +  D    + +  + +  GV PN ++F  +I  
Sbjct: 373 LELYDAMKKLGVEPDVITYGSLIATCAKARDAATAIKVYEEMRAAGVEPNRILFNVLINA 432

Query: 411 CSR--RYEKA 418
             R  R E+A
Sbjct: 433 LGRANRSEEA 442


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 178/395 (45%), Gaps = 21/395 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAF 81
           +YN +I    + G +     L + M   GL      Y+     +C++ +     A+ +  
Sbjct: 233 TYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEM 292

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K+VP+    T+++L    + + DS+    +     + G+       + L+    K G
Sbjct: 293 ASQKMVPDGF--TYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDG 350

Query: 142 KVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           KV    E ++        P RV++N LI    Q+G ++ AF    +M +    + PDHIT
Sbjct: 351 KVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSR--HIKPDHIT 408

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+     A ++  A+++   +    +  T E +   I+   +TG  E    V  +M 
Sbjct: 409 YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQ 468

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + G+ P+ V   ++++     GK+  A  IL +  ++ +      Y++++ A        
Sbjct: 469 ENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPND 528

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A  L E MKS  + P++ T N LI  LC+  Q+ +  E+++ + +  L P+ ++Y+ L+
Sbjct: 529 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLI 588

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            AC  + +++  L L  +  + G+   +  +  +I
Sbjct: 589 SACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLI 623



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 169/367 (46%), Gaps = 19/367 (5%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H +     +YN L+    R GR+ E   LL++M  + ++     Y   F  + ++  +  
Sbjct: 260 HGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKA 319

Query: 79  EAFRFFKLVPNP-TLSTFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
               F K + N  T+  +    +L  +C   K S  A +VL+ +  AGL     +Y TLI
Sbjct: 320 MLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSI-AEEVLQSLVNAGLVPTRVIYNTLI 378

Query: 135 TTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               ++G+++  F         ++KPD + +NALI    ++  +  A D+L EM  + + 
Sbjct: 379 NGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEM--QDNG 436

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           V+P   T   L+ A    GQ+++   V   + +  +K     Y   +N   + G    A 
Sbjct: 437 VNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAV 496

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           ++ DDM  K V+P+    +A+ID     G  + AF ++++ K+ GIS  I++Y+ L+   
Sbjct: 497 AILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 556

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            N     +A E+   + + +L P   + N LI+A C    + K +++   M   G+    
Sbjct: 557 CNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTV 616

Query: 367 ITYSILL 373
            TY  L+
Sbjct: 617 RTYHQLI 623



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 162/368 (44%), Gaps = 42/368 (11%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P   ++N++++    +     A +V   + E  +  +   Y T+I    K G ++A F
Sbjct: 192 PPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGF 251

Query: 148 --------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----------- 188
                     +KP+ + +N L++   ++G +     +L EM ++    D           
Sbjct: 252 SLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGL 311

Query: 189 -----------------PDHITIG-----ALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
                             + +TIG      L+      G+V  A EV + +    +  T 
Sbjct: 312 SRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTR 371

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
            +Y   IN   QTG+ E A S +  M  + + PD +  +ALI+    A ++  A ++L E
Sbjct: 372 VIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLME 431

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            ++ G++  + ++++L+ A       +K   +   M+   LKP V +  +++ A C   +
Sbjct: 432 MQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGK 491

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +P+ + +L DM    + PN   Y+ ++ A       +   +L+ + K +G+ P++V +  
Sbjct: 492 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNL 551

Query: 407 II-GMCSR 413
           +I G+C++
Sbjct: 552 LIKGLCNQ 559



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 149/365 (40%), Gaps = 46/365 (12%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
           P P+LS+ N+L+    S        +   ++  AG + D   +   +  C  +G +    
Sbjct: 121 PLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWNKAVQACVAAGDLGEAV 180

Query: 144 ---------------------------------------DAMFEN-VKPDRVVFNALITA 163
                                                  D M E  V P+ + +N +I  
Sbjct: 181 GMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDG 240

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
             + G ++  F +  +M    H + P+ IT   L+     AG++     +   +    + 
Sbjct: 241 HIKGGDLEAGFSLRDQM--VCHGLKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMV 298

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                Y+I  +  S+ GD +   S++    K GV   +   S L++     GKV  A E+
Sbjct: 299 PDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 358

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           LQ   N G+    + Y++L+         + A   +  MKS  +KP   T NALI  LC 
Sbjct: 359 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCK 418

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
            +++    ++L +M+  G+ P   T++ L+ A  R   +E   ++LS+ +E+G+ PN+V 
Sbjct: 419 AERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVS 478

Query: 404 FKCII 408
           +  I+
Sbjct: 479 YGSIV 483



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 61/163 (37%), Gaps = 1/163 (0%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNAK 310
           +   G  PD    +  +     AG +  A  +L+     G       SY+ ++     A 
Sbjct: 151 LASAGARPDTFAWNKAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAG 210

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
               A+E+++ M    + P   T N +I     G  L     +   M   GL PN ITY+
Sbjct: 211 RGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYN 270

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +LL    R   +     LL +     ++P+   +  +    SR
Sbjct: 271 VLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSR 313


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 182/400 (45%), Gaps = 21/400 (5%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN +I    ++G +++  DL ++M ++G+      Y++    +CK+ +A+ +A 
Sbjct: 229 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKA-RAMDKAE 287

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
            F + + N    P   T+N L+   +S+   + A +V + ++   +  D    + L+ + 
Sbjct: 288 AFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSL 347

Query: 138 AKSGKV-------DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            K GK+       D M  +   PD   +N ++      G +    D+   M  +   + P
Sbjct: 348 CKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD--GIAP 405

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D  T   L+KA AN G +D+A  ++  +  + +K     Y   I    + G  + A   +
Sbjct: 406 DFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 465

Query: 250 DDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           + M  +GV PD+   + LI  F  H G +  A E++ E  N G+ + I+ +SS++     
Sbjct: 466 NQMIDQGVAPDKYAYNCLIQGFCTH-GSLLKAKELISEIMNNGMHLDIVFFSSIINNLCK 524

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                 A  +++   ++ L P     + L+   C   ++ K + V   M S G+ PN + 
Sbjct: 525 LGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVV 584

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           Y  L+    +   ++ GL L  +  + G+ P+ +++  II
Sbjct: 585 YCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIII 624



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/411 (21%), Positives = 176/411 (42%), Gaps = 46/411 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+I E  D+ + M  KG  + D   +    N   ++  + +    F L+      P
Sbjct: 347 LCKYGKIKEARDVFDTMAMKGQ-NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAP 405

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN- 149
              TFN+L+   A+    + A  +   +++ G+K D   Y T+I    + GK+D   E  
Sbjct: 406 DFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 465

Query: 150 -------VKPDRVVFNALITACGQSGAVDRAFDVLAE-MNAEVH---------------- 185
                  V PD+  +N LI      G++ +A ++++E MN  +H                
Sbjct: 466 NQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 525

Query: 186 ----------------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
                            + PD +    LM      G++++A  V+  +    I+    VY
Sbjct: 526 GRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVY 585

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
              +N   + G  +   S++ +M ++G+ P  +  S +ID    AG+   A     E   
Sbjct: 586 CTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTE 645

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            GI++ I +Y+ ++      + + +A+ L++ ++++ +K  + T+N +I  +    ++ +
Sbjct: 646 SGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEE 705

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
             ++ + +    L PN +TYSI++    ++  VE    + S  +  G  PN
Sbjct: 706 AKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPN 756



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/440 (21%), Positives = 178/440 (40%), Gaps = 64/440 (14%)

Query: 36  IRQG--RISECIDLLEDMERKG--LLDMD------KVYHARFFNVCKSQKAIKEAFRFFK 85
           +R+G  R  E  DLL++++R+G  +L+ D       +  A     C+S  A+  A  F +
Sbjct: 51  VREGTLRPEEAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVAL-FNR 109

Query: 86  L--------VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                    V +PT  T+ +LM  C  +   E A      +   GL+ +  +   L+   
Sbjct: 110 AASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGF 169

Query: 138 AKSGKVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
            ++ + D   +            PD   ++ L+ +    G   +A D+L  M        
Sbjct: 170 CEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCS 229

Query: 189 PDHITIGALMKACANAGQVDRAREVYK-MIHK---------------------------- 219
           P+ +    ++      G V++A +++K M+ +                            
Sbjct: 230 PNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 289

Query: 220 ----YNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
                N +  P    Y   I   S TG W+ A  V+ +M +  ++PD V LS L+     
Sbjct: 290 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 349

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
            GK++ A ++      +G +  + SY+ ++   +         +L++ M    + P   T
Sbjct: 350 YGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYT 409

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            N LI A  +   L K M + ++M+  G+ P+ +TY  ++ A  R   ++  +   +Q  
Sbjct: 410 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMI 469

Query: 394 EDGVIPNLVMFKCII-GMCS 412
           + GV P+   + C+I G C+
Sbjct: 470 DQGVAPDKYAYNCLIQGFCT 489


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 148/346 (42%), Gaps = 10/346 (2%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           K   AI       K  P P++  FN L+S     K  +    + + ++  G++ D   + 
Sbjct: 65  KLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFN 124

Query: 132 TLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
            +I       +V               +PDRV   +L+    +   V  A  ++ +M  E
Sbjct: 125 IVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM-VE 183

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
           +    PD +   A++ +     +V+ A + +K I +  I+     YT  +N    +G W 
Sbjct: 184 IG-YRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWN 242

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  +  DM K+ + P+ +  SAL+D     GKV  A EI +E     I   I++YSSL+
Sbjct: 243 DAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLI 302

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                     +A ++++ M S    P V + N LI   C   ++   M++   M   GL 
Sbjct: 303 NGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLV 362

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            NT+TY+ L+    +  DV+      SQ    GV P++  +  ++G
Sbjct: 363 NNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLG 408



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 183/413 (44%), Gaps = 21/413 (5%)

Query: 12  PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           P+P+    N       ++  Y+ +I  G+  E + +     R  L   + V +   F  C
Sbjct: 81  PFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGI-----RNDLYTFNIVINC--FCCC 133

Query: 72  -KSQKAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
            +   A+    +  KL   P   T   L++  C  ++ S+    V ++V E G + D   
Sbjct: 134 FQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV-EIGYRPDIVA 192

Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y  +I +  K+ +V+   +         ++P+ V + AL+     SG  + A  +L +M 
Sbjct: 193 YNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMI 252

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
                + P+ IT  AL+ A    G+V  A+E+++ + + +I      Y+  IN       
Sbjct: 253 K--RKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDR 310

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            + A  ++D M  KG  PD V  + LI+    A +VE   ++ ++   +G+    ++Y++
Sbjct: 311 IDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNT 370

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+       +  KA E +  M S  + P + T N L+  LCD   L K + +  DM+   
Sbjct: 371 LIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSE 430

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           +  + +TY+ ++    +   VE    L       G+ P++V +  ++ G+C++
Sbjct: 431 MDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTK 483



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 169/386 (43%), Gaps = 29/386 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   R+ R+S+ + L++ M   G       Y+A   ++CK+++ + +A  FFK +     
Sbjct: 163 NGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRR-VNDALDFFKEIGRKGI 221

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DA 145
            P + T+  L++   +S     A ++LR + +  +  +   Y+ L+    K+GKV     
Sbjct: 222 RPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKE 281

Query: 146 MFE-----NVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGAL 197
           +FE     ++ PD V +++LI        +D A   FD++           PD ++   L
Sbjct: 282 IFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCF-----PDVVSYNTL 336

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +     A +V+   ++++ + +  +      Y   I    Q GD + A   +  M   GV
Sbjct: 337 INGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGV 396

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKAL 316
            PD    + L+      G +E A  I ++ +   + + I++Y++++ G C   K  + A 
Sbjct: 397 SPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGK-VEDAW 455

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            L+  +    LKP + T   +++ LC      +   + + MK  GL  N    S+L   C
Sbjct: 456 GLFCSLSLKGLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKND---SML---C 509

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLV 402
               D+ +   L+ +    G  P+L+
Sbjct: 510 LGDGDITISAELIKKMLSCGYAPSLL 535


>gi|9755886|emb|CAC01940.1| 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus]
          Length = 700

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 143/296 (48%), Gaps = 15/296 (5%)

Query: 139 KSGKV-DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           KS K+ D M +  VKPD   F  LI+   Q G   RA +   +M +    ++PD++T+ A
Sbjct: 191 KSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPKRAVEWFEKMPS--FGLEPDNVTLAA 248

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ A   AG V+ A  +Y        +  P  ++  I      G+++   ++Y++M   G
Sbjct: 249 MIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGNYDGCLNIYEEMKSLG 308

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V P+ V  + L+D  G A +   A  I ++  + G      +Y++L+ A   A+  + AL
Sbjct: 309 VKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAALIRAYGRARYGEDAL 368

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVA 375
            +Y  MK   L+ TV   N L++   D   + +  E+  DMKS G C P++ T+S L+  
Sbjct: 369 VIYRQMKGKGLELTVILYNTLLSMCADIGYVDEAFEIFQDMKSSGTCEPDSWTFSSLITV 428

Query: 376 ---CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF 428
              C R  + E     L + +E G  P L +   +I  C   Y KA+ +++ V +F
Sbjct: 429 YSCCGRVSEAEAA---LREMREAGFEPTLFVLTSLI-QC---YGKAKQVDDVVRTF 477



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 150/337 (44%), Gaps = 11/337 (3%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGK 142
           L P   +  +N+ M V   SKD E + ++   + + G+K D   +TTLI+    C    +
Sbjct: 167 LKPTREVILYNVTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPKR 226

Query: 143 VDAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
               FE      ++PD V   A+I A G++G V+ A  +      E   +DP  +T   L
Sbjct: 227 AVEWFEKMPSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDP--VTFSTL 284

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           ++    AG  D    +Y+ +    +K    +Y   ++   +      A  ++ D+   G 
Sbjct: 285 IRIYGYAGNYDGCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGF 344

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P+    +ALI   G A   E A  I ++ K +G+ + +I Y++L+  C++     +A E
Sbjct: 345 EPNWSTYAALIRAYGRARYGEDALVIYRQMKGKGLELTVILYNTLLSMCADIGYVDEAFE 404

Query: 318 LYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +++ MKS    +P   T ++LIT      ++ +    L +M+  G  P     + L+   
Sbjct: 405 IFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCY 464

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            +   V+  +    Q  E G+ P+     C++ + ++
Sbjct: 465 GKAKQVDDVVRTFEQVLELGIEPDDRFCGCLLNVMTQ 501



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 146/318 (45%), Gaps = 22/318 (6%)

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           I     MK    +  ++++ +++  + +  +K     +T  I+C  Q G  + A   ++ 
Sbjct: 174 ILYNVTMKVFRKSKDLEKSEKLFDEMLQRGVKPDNATFTTLISCARQCGLPKRAVEWFEK 233

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M   G+ PD V L+A+ID  G AG VE A  +   A+ +   +  +++S+L+     A N
Sbjct: 234 MPSFGLEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDPVTFSTLIRIYGYAGN 293

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           +   L +YE MKS+ +KP +   N L+ ++    +  +   +  D+ S G  PN  TY+ 
Sbjct: 294 YDGCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDLISNGFEPNWSTYAA 353

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 429
           L+ A  R    E  L++  Q K  G+   ++++  ++ MC+     ++A  + + + S  
Sbjct: 354 LIRAYGRARYGEDALVIYRQMKGKGLELTVILYNTLLSMCADIGYVDEAFEIFQDMKSSG 413

Query: 430 SGRPQIENKWTSLALM-VY-------------REAIVAGTIPTVEVVSKVLGCLQLPYNA 475
           +  P   + WT  +L+ VY             RE   AG  PT+ V++ ++ C       
Sbjct: 414 TCEP---DSWTFSSLITVYSCCGRVSEAEAALREMREAGFEPTLFVLTSLIQCYGKAKQV 470

Query: 476 DIRERLVEN---LGVSAD 490
           D   R  E    LG+  D
Sbjct: 471 DDVVRTFEQVLELGIEPD 488



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 147/371 (39%), Gaps = 69/371 (18%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +++ LIR     G    C+++ E+M+  G+     +Y+    ++ K+++  +       L
Sbjct: 280 TFSTLIRIYGYAGNYDGCLNIYEEMKSLGVKPNLVIYNRLLDSMGKAKRPWQATMIHKDL 339

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + N   P  ST+  L+     ++  E A  + R ++  GL+    LY TL++ CA  G V
Sbjct: 340 ISNGFEPNWSTYAALIRAYGRARYGEDALVIYRQMKGKGLELTVILYNTLLSMCADIGYV 399

Query: 144 DAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           D  FE           +PD   F++LIT     G V  A   L EM       +P    +
Sbjct: 400 DEAFEIFQDMKSSGTCEPDSWTFSSLITVYSCCGRVSEAEAALREMREA--GFEPTLFVL 457

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA----CS--- 247
            +L++    A QVD     ++ + +  I+         +N  +QT   E      C    
Sbjct: 458 TSLIQCYGKAKQVDDVVRTFEQVLELGIEPDDRFCGCLLNVMTQTPTEEIGKLIECVEKA 517

Query: 248 -----------VYDDMTKKGVIPDE--------------VFLSALIDFAGHAGKVEAAFE 282
                      V ++  ++GV+  E               +L+ LID   +  K+E A E
Sbjct: 518 KPKLGRVVKMLVEEENCEEGVLKKEASELIDSIGSDVNKAYLNCLIDLCVNLNKLEKACE 577

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT--- 339
           ILQ      I  G+ S S        A  W        H+KS+ L   ++ ++  +    
Sbjct: 578 ILQLGLEYDIYSGLQSKS--------ATQWSL------HLKSLSLGAALTALHVWMNDLS 623

Query: 340 --ALCDGDQLP 348
             AL  G++ P
Sbjct: 624 EAALTSGEEFP 634


>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g19290-like [Cucumis
           sativus]
          Length = 885

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 180/407 (44%), Gaps = 21/407 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----KAIKEAFRFFKLVPNPT 91
           ++G +       +++E  GL     VY+       K++       + E  R   +VP+  
Sbjct: 339 KEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGI 398

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFE 148
             TFN L++        E   ++LR +  +GL  D  L    +     +G+ D    + E
Sbjct: 399 --TFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLE 456

Query: 149 N-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           N     + P  V FN++I A G +G  +RAF     M      + P   T  +L+ +   
Sbjct: 457 NLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVK--FGLTPSSSTCSSLLISLVR 514

Query: 204 AGQVDRAR-EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            G +D A   +Y MI K     T   +T+ ++   + G    A S++++M  +GV PD V
Sbjct: 515 KGSLDEAWIALYDMIDK-GFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAV 573

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +A I+    +G +  A+++  +   +G       Y+SL+G         +AL+L   M
Sbjct: 574 AFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREM 633

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               L P + T+N +I  LC   ++   +E   DM  +GL P+ +TY+ L+    +  DV
Sbjct: 634 NKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDV 693

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLS 427
                L+ +  + G  P+L  +   I G C+ R+  +A  + E ++S
Sbjct: 694 GGADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELIS 740



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 92/432 (21%), Positives = 189/432 (43%), Gaps = 30/432 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           ++N L+    R G+  +   LL D+   GLL    +       +C + +   EA +    
Sbjct: 399 TFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGR-YDEAMKLLEN 457

Query: 85  ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              K +P P++  FN +++   ++   E AF    ++ + GL       ++L+ +  + G
Sbjct: 458 LLEKGIP-PSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKG 516

Query: 142 KVD----AMFENVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            +D    A+++ +        + F  L+    + GAV+ A  +  EM      V PD + 
Sbjct: 517 SLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKG--RGVFPDAVA 574

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             A +     +G +  A +V+  + +        VY   I    + G    A  +  +M 
Sbjct: 575 FAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMN 634

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           K+G++PD   ++ +I      G+++ A E   +    G+S  I++Y++L+     A +  
Sbjct: 635 KRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVG 694

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A +L   M     +P ++T N  I   C   ++ + + +L ++ S+G+ PNT+TY+ ++
Sbjct: 695 GADDLMMKMSDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMI 754

Query: 374 VA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFK------CIIGMCSRRYEKARTLNEHVL 426
            A C     ++  ++L ++  +   +PN V         C  GM  +     + L+E  L
Sbjct: 755 NAVCNVI--LDHAMILTAKLLKMAFVPNTVTVNVLLSQFCKQGMPEKAIFWGQKLSEIHL 812

Query: 427 SFNSGRPQIENK 438
            F+    ++ N+
Sbjct: 813 DFDETTHKLMNR 824



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 155/392 (39%), Gaps = 49/392 (12%)

Query: 32  YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-KSQKAIKEAFRFF--KLVP 88
           +  LIR G       L  D+ RKG    +  ++      C K    I EA      K   
Sbjct: 229 FRLLIRAGDCGAVWKLFGDVVRKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRC 288

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---A 145
            P + ++N++++       S  A  +L L+ E G K     + T+I    K G V+    
Sbjct: 289 EPDVYSYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARK 348

Query: 146 MFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            F+ ++      + +V+N +I+   ++  + +A  +  EM  +   + PD IT   L+  
Sbjct: 349 YFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTK--DIVPDGITFNTLVAG 406

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G+ +    + +                                   D++  G++ D
Sbjct: 407 HYRYGKEEDGNRLLR-----------------------------------DLSVSGLLHD 431

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
                  +     AG+ + A ++L+    +GI   +++++S++ A  NA   ++A   Y 
Sbjct: 432 SSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYG 491

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    L P+ ST ++L+ +L     L +    L DM   G     + +++LL    R  
Sbjct: 492 IMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIG 551

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            V +   L ++ K  GV P+ V F   I G+C
Sbjct: 552 AVNMAESLWNEMKGRGVFPDAVAFAAFINGLC 583



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 125/308 (40%), Gaps = 23/308 (7%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSG 168
           E  F VL  + +A +K++       I +  +   V     N     ++F  LI A G  G
Sbjct: 184 ESDFSVLDTLMQAFVKSEMHFEALEILSKMREVGVTP---NPSAISILFRLLIRA-GDCG 239

Query: 169 AVDRAF-DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
           AV + F DV+ +      P  P++ T   L+      G       +  ++ K+  +    
Sbjct: 240 AVWKLFGDVVRK-----GPC-PNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVY 293

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y I IN     G   +A  + + M + G  P       +ID     G VE A +   E 
Sbjct: 294 SYNIVINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEI 353

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC----- 342
           ++ G+S   I Y+ ++     A++  +A  L+E M++  + P   T N L+         
Sbjct: 354 EDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKE 413

Query: 343 -DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
            DG++L + + V   +    LC  T+     L    R D+    + LL    E G+ P++
Sbjct: 414 EDGNRLLRDLSVSGLLHDSSLCDVTVAG---LCWAGRYDE---AMKLLENLLEKGIPPSV 467

Query: 402 VMFKCIIG 409
           V F  II 
Sbjct: 468 VAFNSIIA 475


>gi|298705959|emb|CBJ29080.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 692

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 123/273 (45%), Gaps = 11/273 (4%)

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAMFEN-V 150
           +   A++K  E A  +L  ++EAG       Y   I  C K+GK       +D M  + V
Sbjct: 351 LKAAANTKSWERALNLLDGMREAGYAPHPGAYACAIRACGKAGKWEHSLALMDEMRSSGV 410

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           +P        + AC  +G  ++   +L +M A    V+    T    MKAC +AG+ + A
Sbjct: 411 EPGEGCNVMALKACADAGLWEKTLGMLKDMRA--SGVNRSESTFVVAMKACGDAGRWEEA 468

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
             V   + +  I      YT A+  C   G WE A  ++D+M   G+ P E   +A I  
Sbjct: 469 LAVMDDMRRDGIPPMETTYTTAMKACGSVGKWEQALKLFDEMKDIGIAPTEQCYTAAIRA 528

Query: 271 AGHAGKVEAAFE-ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
              A K E A   +LQ     G+S  + S+ + M A   A +W  AL L E  +  +LKP
Sbjct: 529 CAKADKAEKASSLLLQMCSAPGVSTNMSSFRAAMDAYCRAGDWASALRLLEDARRYQLKP 588

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
             + +  ++ A    +Q  + + +L +M+S G+
Sbjct: 589 NTADLRTMVEACGKAEQHERALSLLEEMRSEGM 621



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 118/257 (45%), Gaps = 4/257 (1%)

Query: 143 VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +D M E    P    +   I ACG++G  + +  ++ EM +    V+P        +KAC
Sbjct: 367 LDGMREAGYAPHPGAYACAIRACGKAGKWEHSLALMDEMRS--SGVEPGEGCNVMALKAC 424

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A+AG  ++   + K +    +  +   + +A+  C   G WE A +V DDM + G+ P E
Sbjct: 425 ADAGLWEKTLGMLKDMRASGVNRSESTFVVAMKACGDAGRWEEALAVMDDMRRDGIPPME 484

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              +  +   G  GK E A ++  E K+ GI+     Y++ + AC+ A   +KA  L   
Sbjct: 485 TTYTTAMKACGSVGKWEQALKLFDEMKDIGIAPTEQCYTAAIRACAKADKAEKASSLLLQ 544

Query: 322 MKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           M S   +   +S+  A + A C        + +L D +   L PNT     ++ AC + +
Sbjct: 545 MCSAPGVSTNMSSFRAAMDAYCRAGDWASALRLLEDARRYQLKPNTADLRTMVEACGKAE 604

Query: 381 DVEVGLMLLSQAKEDGV 397
             E  L LL + + +G+
Sbjct: 605 QHERALSLLEEMRSEGM 621



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 158/399 (39%), Gaps = 12/399 (3%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS 93
           R  RQ R+   + +      KG    +      F +V  +  +          VP   LS
Sbjct: 215 RDFRQRRVKSVVRVTSGKGGKGARPSENNSRGTFRHVGTTAASSPAGSAVLVEVPPKALS 274

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK------LYTTLITTCAKSG--KVDA 145
           +F M      S+     +  +L  ++EA LK   K       ++  + + A  G  KV  
Sbjct: 275 SFRMENCKFQSTSCRRFSENILPPLREAYLKETSKNLTSSPTFSNAVASSAADGDDKVGV 334

Query: 146 MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           +      P    F + + A   + + +RA ++L  M    +   P        ++AC  A
Sbjct: 335 LLTAETPPGEKFFLSELKAAANTKSWERALNLLDGMREAGYAPHPGAYACA--IRACGKA 392

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G+ + +  +   +    ++       +A+  C+  G WE    +  DM   GV   E   
Sbjct: 393 GKWEHSLALMDEMRSSGVEPGEGCNVMALKACADAGLWEKTLGMLKDMRASGVNRSESTF 452

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
              +   G AG+ E A  ++ + +  GI     +Y++ M AC +   W++AL+L++ MK 
Sbjct: 453 VVAMKACGDAGRWEEALAVMDDMRRDGIPPMETTYTTAMKACGSVGKWEQALKLFDEMKD 512

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSILLVACERKDDVE 383
           I + PT     A I A    D+  K   +L  M S  G+  N  ++   + A  R  D  
Sbjct: 513 IGIAPTEQCYTAAIRACAKADKAEKASSLLLQMCSAPGVSTNMSSFRAAMDAYCRAGDWA 572

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
             L LL  A+   + PN    + ++  C +  +  R L+
Sbjct: 573 SALRLLEDARRYQLKPNTADLRTMVEACGKAEQHERALS 611



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 111/268 (41%), Gaps = 38/268 (14%)

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +KA AN    +RA  +   + +      P  Y  AI  C + G WE + ++ D+M   GV
Sbjct: 351 LKAAANTKSWERALNLLDGMREAGYAPHPGAYACAIRACGKAGKWEHSLALMDEMRSSGV 410

Query: 258 IPDE----VFLSALIDFA-------------------------------GHAGKVEAAFE 282
            P E    + L A  D                                 G AG+ E A  
Sbjct: 411 EPGEGCNVMALKACADAGLWEKTLGMLKDMRASGVNRSESTFVVAMKACGDAGRWEEALA 470

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           ++ + +  GI     +Y++ M AC +   W++AL+L++ MK I + PT     A I A  
Sbjct: 471 VMDDMRRDGIPPMETTYTTAMKACGSVGKWEQALKLFDEMKDIGIAPTEQCYTAAIRACA 530

Query: 343 DGDQLPKTMEVLSDMKSL-GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
             D+  K   +L  M S  G+  N  ++   + A  R  D    L LL  A+   + PN 
Sbjct: 531 KADKAEKASSLLLQMCSAPGVSTNMSSFRAAMDAYCRAGDWASALRLLEDARRYQLKPNT 590

Query: 402 VMFKCIIGMCSR--RYEKARTLNEHVLS 427
              + ++  C +  ++E+A +L E + S
Sbjct: 591 ADLRTMVEACGKAEQHERALSLLEEMRS 618



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 84/207 (40%), Gaps = 30/207 (14%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           N + STF + M  C  +   E A  V+                            D   +
Sbjct: 446 NRSESTFVVAMKACGDAGRWEEALAVMD---------------------------DMRRD 478

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            + P    +   + ACG  G  ++A  +  EM  ++  + P      A ++ACA A + +
Sbjct: 479 GIPPMETTYTTAMKACGSVGKWEQALKLFDEMK-DIG-IAPTEQCYTAAIRACAKADKAE 536

Query: 209 RARE-VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           +A   + +M     +      +  A++   + GDW  A  + +D  +  + P+   L  +
Sbjct: 537 KASSLLLQMCSAPGVSTNMSSFRAAMDAYCRAGDWASALRLLEDARRYQLKPNTADLRTM 596

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISV 294
           ++  G A + E A  +L+E +++G+++
Sbjct: 597 VEACGKAEQHERALSLLEEMRSEGMNL 623



 Score = 40.0 bits (92), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 13/158 (8%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P  +T+   M  C S    E A ++   +++ G+    + YT  I  CAK+ K +     
Sbjct: 482 PMETTYTTAMKACGSVGKWEQALKLFDEMKDIGIAPTEQCYTAAIRACAKADKAEKASSL 541

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    V  +   F A + A  ++G    A  +L   +A  + + P+   +  +++A
Sbjct: 542 LLQMCSAPGVSTNMSSFRAAMDAYCRAGDWASALRLLE--DARRYQLKPNTADLRTMVEA 599

Query: 201 CANAGQVDRAREVYKMIHK--YNIKGTPEVYTIAINCC 236
           C  A Q +RA  + + +     N++ T E      N C
Sbjct: 600 CGKAEQHERALSLLEEMRSEGMNLRRTGEKLWWVFNTC 637


>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 187/400 (46%), Gaps = 28/400 (7%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           ++SYN L+      G + E ++   DME  G+ + D V +    N  +    I  A++  
Sbjct: 305 VYSYNILLHGLCVAGSMEEALEFTNDMENHGV-EPDIVTYNILANGFRILGLISGAWKVV 363

Query: 85  KLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + +     NP L T+ +L+       + E +F++   +   GLK     YT L+++  KS
Sbjct: 364 QRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKS 423

Query: 141 GKVDA----MFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G++D     + E     +KPD + ++         GAV+ A ++  EM ++   + P+  
Sbjct: 424 GRIDEAVILLHEMEVIGLKPDLLTYS--------RGAVEEAIELYEEMCSK--RIYPNSF 473

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              A++      G +  A+  +  + K ++     +Y I I+  ++ G+   A   Y  +
Sbjct: 474 VCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQI 533

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            +KG+ P  V  ++LI      GK+  A ++L   K  G+    ++Y++LM       + 
Sbjct: 534 IEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDM 593

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
               ++   M++  +KPT  T   ++  LC   +L +++++L  M + GL P+ ITY+ +
Sbjct: 594 HSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTV 653

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + +  +  D++    L +Q  +  + P+ V +  +I G+C
Sbjct: 654 IQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLC 693



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 174/387 (44%), Gaps = 25/387 (6%)

Query: 51  MERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSK 106
           M + GLL     Y+     +C +  +++EA  F   + N    P + T+N+L +      
Sbjct: 296 MIKYGLLPDVYSYNILLHGLCVA-GSMEEALEFTNDMENHGVEPDIVTYNILANGFRILG 354

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFN 158
              GA++V++ +   GL  D   YT LI    + G ++  F        + +K   V + 
Sbjct: 355 LISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYT 414

Query: 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 218
            L+++  +SG +D A  +L EM  EV  + PD +T         + G V+ A E+Y+ + 
Sbjct: 415 VLLSSLCKSGRIDEAVILLHEM--EVIGLKPDLLTY--------SRGAVEEAIELYEEMC 464

Query: 219 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278
              I     V +  I+   + G    A   +D +TK  V  + +  + +ID     G + 
Sbjct: 465 SKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIG 524

Query: 279 AAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
            A    ++   +GIS  I++++SL+ G C   K   +A++L + +K   L PT  T   L
Sbjct: 525 EAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGK-LAEAVKLLDTIKVHGLVPTSVTYTTL 583

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           +   C+   +    ++L +M++  + P  ITY++++    ++  +   + LL      G+
Sbjct: 584 MNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGL 643

Query: 398 IPNLVMFKCIIGMCSRRYEKARTLNEH 424
            P+ + +  +I    + ++  +    H
Sbjct: 644 FPDQITYNTVIQSFCKAHDLQKAFQLH 670



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 86/451 (19%), Positives = 185/451 (41%), Gaps = 54/451 (11%)

Query: 31  SYNRLIRQGRISECI-DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN 89
           +YN L+   R ++ + D+  +++  G+   +         +C+ Q  +++A  F +    
Sbjct: 205 TYNSLLYNLRHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCR-QSRLQDAVTFLRETGG 263

Query: 90  ----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P++ +FN LMS        + A     ++ + GL  D   Y  L+     +G ++ 
Sbjct: 264 EEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEE 323

Query: 146 MFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
             E         V+PD V +N L       G +  A+ V+  M   ++ ++PD +T   L
Sbjct: 324 ALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRM--LLNGLNPDLVTYTIL 381

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW--------------- 242
           +      G ++ + ++ + +    +K +   YT+ ++   ++G                 
Sbjct: 382 ICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGL 441

Query: 243 ------------EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
                       E A  +Y++M  K + P+    SA+I      G +  A          
Sbjct: 442 KPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKS 501

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
            ++  II Y+ ++   +   N  +A+  Y+ +    + PT+ T N+LI   C   +L + 
Sbjct: 502 DVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEA 561

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 409
           +++L  +K  GL P ++TY+ L+     + D+     +L + +   + P  + +  ++ G
Sbjct: 562 VKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKG 621

Query: 410 MCSR----------RYEKARTLNEHVLSFNS 430
           +C            +Y  AR L    +++N+
Sbjct: 622 LCKEGRLHESVQLLKYMYARGLFPDQITYNT 652



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 146/339 (43%), Gaps = 21/339 (6%)

Query: 99  MSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVV 156
           M  CA S+      A  VL  ++   L+     Y +L+     +  +  ++  +K   V 
Sbjct: 173 MLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIKASGVP 232

Query: 157 FNA-----LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
            N      LI    +   +  A   L E   E     P  ++  ALM      G VD A+
Sbjct: 233 QNEYTNPILIDGLCRQSRLQDAVTFLRETGGE--EFGPSVVSFNALMSGFCKMGSVDVAK 290

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
             + M+ KY +      Y I ++     G  E A    +DM   GV PD V  + L +  
Sbjct: 291 SFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGF 350

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G +  A++++Q     G++  +++Y+ L+       N +++ +L E M S  LK ++
Sbjct: 351 RILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSI 410

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T   L+++LC   ++ + + +L +M+ +GL P+ +TYS        +  VE  + L  +
Sbjct: 411 VTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYS--------RGAVEEAIELYEE 462

Query: 392 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS 430
                + PN  +   II   S  +EK   ++E  + F+S
Sbjct: 463 MCSKRIYPNSFVCSAII---SGLFEKG-AISEAQMYFDS 497


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 179/418 (42%), Gaps = 25/418 (5%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH-ARFFNVCKSQKAIKEAF- 81
           +L  ++RL     R  +    +DL + ME KG+     +Y  +   N C   + +  AF 
Sbjct: 71  RLIDFSRLFSVVARTKQYDLVLDLCKQMELKGI--AHNLYTLSIMINCCCRCRKLSLAFS 128

Query: 82  ---RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              +  KL   P   TF+ L++ +C   + SE    V R+V E G K        L+   
Sbjct: 129 AMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMV-EMGHKPTLITLNALVNGL 187

Query: 138 AKSGKV-------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
             +GKV       D M E   +P+ V +  ++    +SG    A ++L +M  E   +  
Sbjct: 188 CLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM--EERKIKL 245

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D +    ++      G +D A  ++  +     K    +YT  I      G W+    + 
Sbjct: 246 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLL 305

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
            DM K+ + PD V  SALID     GK+  A E+ +E   +GIS   ++Y+SL+      
Sbjct: 306 RDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKE 365

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
               KA  + + M S    P + T N LI   C  + +   +E+   M   G+  +T+TY
Sbjct: 366 NQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTY 425

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
           + L+        +EV   L  +     V P++V +K ++ G+C     EKA  + E +
Sbjct: 426 NTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 176/390 (45%), Gaps = 19/390 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-QKAIKEAFRFFKLVPNPT 91
           N L   G++S+ + L++ M   G    +  Y      +CKS Q A+  A    + +    
Sbjct: 185 NGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTAL--AMELLRKMEERK 242

Query: 92  LS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--- 144
           +      +++++         + AF +   ++  G KAD  +YTTLI     +G+ D   
Sbjct: 243 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGA 302

Query: 145 -----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                 +   + PD V F+ALI    + G +  A ++  EM      + PD +T  +L+ 
Sbjct: 303 KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQ--RGISPDTVTYTSLID 360

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                 Q+D+A  +  ++           + I IN   +    +    ++  M+ +GV+ 
Sbjct: 361 GFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVA 420

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALEL 318
           D V  + LI      GK+E A E+ QE  ++ +   I+SY  L+ G C N +  +KALE+
Sbjct: 421 DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEP-EKALEI 479

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           +E ++  K++  +   N +I  +C+  ++    ++   +   G+ P+  TY+I++    +
Sbjct: 480 FEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCK 539

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           K  +    +L  + +EDG  PN   +  +I
Sbjct: 540 KGSLSEADLLFRKMEEDGHSPNGCTYNILI 569



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 168/393 (42%), Gaps = 14/393 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L  +GR+SE ++L++ M   G        +A    +C + K         ++V     
Sbjct: 150 NGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQ 209

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P   T+  ++ V   S  +  A ++LR ++E  +K D   Y+ +I    K G +D  F  
Sbjct: 210 PNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNL 269

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 +  K D +++  LI     +G  D    +L +M      + PD +   AL+   
Sbjct: 270 FNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIK--RKITPDVVAFSALIDCF 327

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G++  A E++K + +  I      YT  I+   +    + A  + D M  KG  P+ 
Sbjct: 328 VKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNI 387

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LI+    A  ++   E+ ++   +G+    ++Y++L+         + A EL++ 
Sbjct: 388 RTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQE 447

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S +++P + +   L+  LCD  +  K +E+   ++   +  +   Y+I++        
Sbjct: 448 MVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK 507

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           V+    L       GV P++  +  +I G+C +
Sbjct: 508 VDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKK 540



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 83/396 (20%), Positives = 166/396 (41%), Gaps = 37/396 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
            +++G++ E  +L ++M ++G+      Y +     CK  +  K       +V     P 
Sbjct: 327 FVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPN 386

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
           + TFN+L++    +   +   ++ R +   G+ AD   Y TLI    + GK++   E   
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 V+PD V +  L+     +G  ++A ++  ++      +D     I  ++    N
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNI--IIHGMCN 504

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           A +VD A +++  +    +K   + Y I I    + G    A  ++  M + G  P+   
Sbjct: 505 ASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCT 564

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVG----------------------IISYSS 301
            + LI      G    + ++++E K  G SV                       + ++++
Sbjct: 565 YNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTT 624

Query: 302 LMGACSNAKNWQ--KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           L+      +N     A  L+++MK++  KP V T N +I  L +G+ + +   VL  M  
Sbjct: 625 LLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFE 684

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            G  PN +T S  +    ++D     ++LL + + D
Sbjct: 685 RGCQPNAVTKSTFISGLCKQDLHGSAILLLRKMEND 720



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 136/340 (40%), Gaps = 37/340 (10%)

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
           D A D+  EM     P  P  I    L    A   Q D   ++ K +    I       +
Sbjct: 54  DDAVDLFQEMTRS-RP-RPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS 111

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
           I INCC +      A S    + K G  PD V  S LI+     G+V  A E++      
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171

Query: 291 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           G    +I+ ++L+ G C N K    A+ L + M     +P   T   ++  +C   Q   
Sbjct: 172 GHKPTLITLNALVNGLCLNGK-VSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTAL 230

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
            ME+L  M+   +  + + YSI++    +   ++    L ++ +  G   +++++  +I 
Sbjct: 231 AMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIR 290

Query: 409 GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGC 468
           G C                  +GR      W   A ++ R+ I     P V   S ++ C
Sbjct: 291 GFCY-----------------AGR------WDDGAKLL-RDMIKRKITPDVVAFSALIDC 326

Query: 469 L----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
                +L    ++ + +++  G+S D +  +   SLIDGF
Sbjct: 327 FVKEGKLREAEELHKEMIQR-GISPDTVTYT---SLIDGF 362



 Score = 43.5 bits (101), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           K + A ++ QE         +I +S L    +  K +   L+L + M+   +   + T++
Sbjct: 52  KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS 111

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            +I   C   +L      +  +  LG  P+T+T+S L+     +  V   L L+ +  E 
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171

Query: 396 GVIPNLVMFKCII-GMC 411
           G  P L+    ++ G+C
Sbjct: 172 GHKPTLITLNALVNGLC 188


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 148/328 (45%), Gaps = 13/328 (3%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC---AKSGKVDAMFENV-- 150
           ++L   C + +  E    +L    E G   D   Y  L+ +     KSG+ D +   +  
Sbjct: 153 HLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAE 212

Query: 151 -----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                 PD V +N +I    + G V++A D+  EM     P  PD +T  +++ A   A 
Sbjct: 213 GGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIP--PDLVTYSSVVHALCKAR 270

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +D+A    + +    +      Y   I   S TG W+ A  V+ +M ++ ++PD V L+
Sbjct: 271 AMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALN 330

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+      GK++ A ++      +G +  + SY+ ++   +         +L++ M   
Sbjct: 331 TLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGD 390

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + P + T N LI A  +   L K M + ++M+  G+ P+ +TY  ++ A  R   ++  
Sbjct: 391 GIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDA 450

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCS 412
           +   +Q  + GV+P+   + C+I G C+
Sbjct: 451 MEKFNQMIDQGVVPDKYAYHCLIQGFCT 478



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 184/417 (44%), Gaps = 24/417 (5%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN +I    ++G +++  DL ++M ++G+      Y +    +CK+ +A+ +A 
Sbjct: 218 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKA-RAMDKAE 276

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
            F + + N    P   T+N L+   +S+   + A +V + ++   +  D     TL+ + 
Sbjct: 277 AFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSL 336

Query: 138 AKSGKV-------DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            K GK+       D M  +   PD   +  ++      G +    D+   M  +   + P
Sbjct: 337 CKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGD--GIAP 394

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
              T   L+KA AN G +D+A  ++  +  + +K     Y   I    + G  + A   +
Sbjct: 395 VICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKF 454

Query: 250 DDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           + M  +GV+PD+     LI  F  H G +  A E++ E  N G+ + I+ + S++     
Sbjct: 455 NQMIDQGVVPDKYAYHCLIQGFCTH-GSLLKAKELISEIMNNGMRLDIVFFGSIINNLCK 513

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                 A  +++   ++ L P     N L+   C   ++ K + V   M S G+ PN + 
Sbjct: 514 LGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVG 573

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
           Y  L+    +   ++ GL L  +  + G+ P+ +++  II      +E  RT+   V
Sbjct: 574 YGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIII---DGLFEAGRTVPAKV 627



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/414 (19%), Positives = 173/414 (41%), Gaps = 52/414 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+I E  D+ + M  KG  + D   +    N   ++  + +    F L+      P
Sbjct: 336 LCKYGKIKEARDVFDTMAMKGQ-NPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAP 394

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            + TFN+L+   A+    + A  +   +++ G+K     Y T+I    + GK+D   E  
Sbjct: 395 VICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKF 454

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEM---------------------- 180
                  V PD+  ++ LI      G++ +A ++++E+                      
Sbjct: 455 NQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKL 514

Query: 181 --------------NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
                         N  +HP   D +    LM      G++++A  V+  +    I+   
Sbjct: 515 GRVMDAQNIFDLTVNVGLHP---DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV 571

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             Y   +N   + G  +   S++ +M +KG+ P  +  + +ID    AG+   A     E
Sbjct: 572 VGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHE 631

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               GI++   +YS ++      + + +A+ L++ ++++ +K  + T+N +I  +    +
Sbjct: 632 MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 691

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           + +  ++ + +   GL P  +TYSI++    ++  VE    + S  +  G  P+
Sbjct: 692 VEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPD 745


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 146/319 (45%), Gaps = 40/319 (12%)

Query: 141 GKVDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           G VD M    +     VF  LI    ++G +  A ++  EM    +  +P+ +T  ALM 
Sbjct: 241 GLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGY--EPNIVTCTALMG 298

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G VD ARE++  I ++  K     Y + I+   + G    A  V+D+M ++GV+P
Sbjct: 299 GYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVP 358

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII---------------------- 297
           + V  ++LID    AG+V  A+EI++     G++  I+                      
Sbjct: 359 NIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLF 418

Query: 298 -------------SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
                        SY+ L+  C  ++   +A+ L   M    L P + T + LI  LC  
Sbjct: 419 NQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRS 478

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            ++     +L++M   G  P+TITYSILL A  +K  ++  + L +Q  + G+ P+++ +
Sbjct: 479 GRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCY 538

Query: 405 KCII-GMC-SRRYEKARTL 421
             +I G C S R ++A  L
Sbjct: 539 TIMIDGYCKSERIDEAINL 557



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/362 (25%), Positives = 167/362 (46%), Gaps = 21/362 (5%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LIR     G+  E   L+++M R+GL     V+      +CK+   ++    F ++
Sbjct: 222 TYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEM 281

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V     P + T   LM       + + A ++   + E G K D   Y   I    K G+V
Sbjct: 282 VNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRV 341

Query: 144 -------DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                  D M  E V P+ V +N+LI    ++G V  A++++  M+     + PD +T  
Sbjct: 342 RDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRS--GLTPDIVTCC 399

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMT 253
            L+     + ++D+A  ++  + +  +  TP+V  YTI I+ C  +     A ++  DM 
Sbjct: 400 ILLDGLCKSKRLDQAILLFNQLVESGL--TPDVWSYTILIHGCCTSRRMGEAMNLLRDMH 457

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            K ++P  V  S LID    +G++  A+ +L E   +G     I+YS L+ A    ++  
Sbjct: 458 LKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLD 517

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A+ L+  M    L+P V     +I   C  +++ + + +  +M    L P+ +TY+IL 
Sbjct: 518 EAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILF 577

Query: 374 VA 375
            A
Sbjct: 578 NA 579



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 78/187 (41%), Gaps = 11/187 (5%)

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
           C    G   F+ S++  + K+G   D V L+ ++      G V  A E   E  N G S+
Sbjct: 81  CFFHLGHVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSL 140

Query: 295 GIISYSSLM-GACSNAKNWQKALELYEHM--------KSIKLKPTVSTMNALITALCDGD 345
             +SY  L+ G C N +   +A+ L   +            +K  V   + +I  LC   
Sbjct: 141 NEVSYGILINGLCENGRV-NEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNG 199

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
            + +  E  ++M   G+CPN  TY  L+           G  L+ +    G+  ++ +F 
Sbjct: 200 FVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFT 259

Query: 406 CII-GMC 411
            +I G+C
Sbjct: 260 VLIDGLC 266


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1080

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 142/327 (43%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
           P++ T+++LM      +D E    +LR ++  G+K +   YT  I    ++ + D  +  
Sbjct: 193 PSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRI 252

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E  KPD +    LI     +G +  A DV  +M        PD +T   L+   
Sbjct: 253 LAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQ--KPDRVTYITLLDKF 310

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            + G      E++  +           YT  I+   Q G    A  ++D+M +KG++P++
Sbjct: 311 GDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQ 370

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++LI     A +   A E+ +     G      ++   +     +    KA++ YE 
Sbjct: 371 YSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYEL 430

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MKS  + P V   NA++  L    +L     V  ++K++G+ P+TITY++++  C +   
Sbjct: 431 MKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASK 490

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
            +  + +     E+  +P+++    +I
Sbjct: 491 FDEAVKIFYDMIENNCVPDVLAVNSLI 517



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 163/375 (43%), Gaps = 17/375 (4%)

Query: 47  LLEDMERKGLLDMDKVY-HARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSV 101
           LL +ME  G+     VY +     V    K   EA+R    + N    P + T  +L+ V
Sbjct: 217 LLREMEAHGV--KPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQV 274

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPD 153
              +     A  V   ++++  K D   Y TL+     +G   ++ E            +
Sbjct: 275 LCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDN 334

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
            V + A+I A  Q G V  A ++  EM  +   + P+  +  +L+     A +   A E+
Sbjct: 335 VVAYTAVIDALCQVGRVFEALEMFDEMKQK--GIVPEQYSYNSLISGFLKADRFGDALEL 392

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           +K +  +  K     + + IN   ++G+   A   Y+ M  KG++PD V  +A++     
Sbjct: 393 FKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAK 452

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           +G++  A  +  E K  G+S   I+Y+ ++  CS A  + +A++++  M      P V  
Sbjct: 453 SGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLA 512

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
           +N+LI  L    +  +   +   +K + L P   TY+ LL    R+  V+  + LL +  
Sbjct: 513 VNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMY 572

Query: 394 EDGVIPNLVMFKCII 408
                PNL+ +  I+
Sbjct: 573 HSNYPPNLITYNTIL 587



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 104/504 (20%), Positives = 194/504 (38%), Gaps = 70/504 (13%)

Query: 18   HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
            H+NY  +    L +YN ++    + G +++ +D+L  M  KG +     Y+   + + K 
Sbjct: 573  HSNYPPN----LITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 628

Query: 74   QKAIKEAFRFF-----KLVPN--------PTLSTFNMLMSVCASSKDS------------ 108
            ++   EAF  F      L+P+        P+     ++       KD             
Sbjct: 629  ER-YNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSS 687

Query: 109  --------------EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDR 154
                          E + +   ++  +G+  D      LI    K  K     E VK  +
Sbjct: 688  CHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFK 747

Query: 155  V--------VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
                     ++N+LI        +D A  + AEM        PD  T   L+ A   + +
Sbjct: 748  SFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKE--LGCGPDEFTYNLLLDAMGKSMR 805

Query: 207  VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            ++   +V + +H+   + T   Y   I+   ++   E A  +Y ++  +G  P       
Sbjct: 806  IEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGP 865

Query: 267  LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
            L+D    AG++E A  +  E    G       Y+ L+     A N +K   L++ M    
Sbjct: 866  LLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQG 925

Query: 327  LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
            + P + +   +I  LC   QL   +     +  +GL P+ ITY++L+    +   +E  +
Sbjct: 926  INPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAV 985

Query: 387  MLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNE--------HVLSFNSG-RPQ 434
             L ++ ++ G++PNL  +  +I   G   +  E  +   E        +V ++N+  R  
Sbjct: 986  SLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGY 1045

Query: 435  IENKWTSLALMVYREAIVAGTIPT 458
              +  T  A   Y   IV G +P 
Sbjct: 1046 SVSGSTDSAYAAYGRMIVGGCLPN 1069



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/422 (20%), Positives = 167/422 (39%), Gaps = 50/422 (11%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AH V   ++SY   IR      R  E   +L  ME +G    D + H     V      I
Sbjct: 223 AHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGC-KPDVITHTVLIQVLCDAGRI 281

Query: 78  KEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A   F    K    P   T+  L+     + DS+   ++   ++  G   +   YT +
Sbjct: 282 SDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAV 341

Query: 134 ITTCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEM----- 180
           I    + G+V     MF+ +K     P++  +N+LI+   ++     A ++   M     
Sbjct: 342 IDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGP 401

Query: 181 --NAEVH--------------------------PVDPDHITIGALMKACANAGQVDRARE 212
             N   H                           + PD +   A++   A +G++  A+ 
Sbjct: 402 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 461

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           V+  +    +      YT+ I CCS+   ++ A  ++ DM +   +PD + +++LID   
Sbjct: 462 VFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLY 521

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            AG+ + A+ I  + K   +     +Y++L+         ++ + L E M      P + 
Sbjct: 522 KAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLI 581

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N ++  LC    +   +++L  M + G  P+  +Y+ ++    +++       +  Q 
Sbjct: 582 TYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQM 641

Query: 393 KE 394
           K+
Sbjct: 642 KK 643



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 158/378 (41%), Gaps = 46/378 (12%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           K   Y  +V       + L + GR+ E +++ ++M++KG++     Y++      K+ + 
Sbjct: 327 KADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADR- 385

Query: 77  IKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
             +A   FK +    P P   T  + ++    S +S  A Q   L++  G          
Sbjct: 386 FGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG---------- 435

Query: 133 LITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
                            + PD V  NA++    +SG +  A  V  E+ A    V PD I
Sbjct: 436 -----------------IVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKA--MGVSPDTI 476

Query: 193 TIGALMKACANAGQVDRAREV-YKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVY 249
           T   ++K C+ A + D A ++ Y MI    +   P+V  +   I+   + G  + A  ++
Sbjct: 477 TYTMMIKCCSKASKFDEAVKIFYDMIENNCV---PDVLAVNSLIDTLYKAGRGDEAWRIF 533

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
             + +  + P +   + L+   G  GKV+    +L+E  +      +I+Y++++      
Sbjct: 534 YQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKN 593

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
                AL++   M +    P +S+ N +I  L   ++  +   +   MK + L P+  T 
Sbjct: 594 GAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKV-LIPDYATL 652

Query: 370 SILLVACERKDDVEVGLM 387
             +L +      V++GLM
Sbjct: 653 CTILPSF-----VKIGLM 665



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 109/276 (39%), Gaps = 2/276 (0%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
            +N L+    +SG    A +V   M   V  V P   T   LM A      V+    + +
Sbjct: 162 TYNGLVYFLVKSGFDREALEVYRVM--MVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLR 219

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            +  + +K     YTI I    Q   ++ A  +   M  +G  PD +  + LI     AG
Sbjct: 220 EMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAG 279

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           ++  A ++  + K        ++Y +L+    +  + Q  +E++  MK+      V    
Sbjct: 280 RISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYT 339

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
           A+I ALC   ++ + +E+  +MK  G+ P   +Y+ L+    + D     L L       
Sbjct: 340 AVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIH 399

Query: 396 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 431
           G  PN       I    +  E  + +  + L  + G
Sbjct: 400 GPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKG 435



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
           ++  L+   G  G +   F+++Q    Q +   + +++++ G        + A      M
Sbjct: 95  YMLELMRGHGRVGDMAEVFDVMQR---QIVKANVGTFAAIFGGLGVEGGLRSAPVALPVM 151

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           K   +     T N L+  L       + +EV   M   G+ P+  TYS+L+VA  ++ DV
Sbjct: 152 KEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDV 211

Query: 383 EVGLMLLSQAKEDGVIPNLVMFK-CI--IGMCSRRYEKARTL 421
           E  L LL + +  GV PN+  +  CI  +G   R  E  R L
Sbjct: 212 ETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRIL 253



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 6/223 (2%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           V +AL +A G + A++R F   A      H       +   +++     G+V    EV+ 
Sbjct: 60  VIHALRSADGPAEALER-FRSAARKPRVAHTT----ASCNYMLELMRGHGRVGDMAEVFD 114

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
           ++ +  +K     +          G    A      M + G++ +    + L+ F   +G
Sbjct: 115 VMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSG 174

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
               A E+ +     G+   + +YS LM A    ++ +  L L   M++  +KP V +  
Sbjct: 175 FDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYT 234

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACE 377
             I  L    +  +   +L+ M++ G  P+ IT+++L+ V C+
Sbjct: 235 ICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCD 277


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 156/333 (46%), Gaps = 15/333 (4%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
           P +  FN+LM  +C   K +E    +   + + GL+     + TLI    KSG +D    
Sbjct: 223 PDVCKFNVLMHRLCKEHKINEAQL-LFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFR 281

Query: 146 ----MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
               M EN V PD   ++ LI    + G +D A  +  EM      + P+ +T   L+  
Sbjct: 282 LKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDR--GLVPNDVTFTTLING 339

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G+ D   E+Y+ + +  +K     Y   IN   + GD   A  +  +MT++G+ PD
Sbjct: 340 HCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPD 399

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 319
           +   + LID     G +E+A EI +E   +GI +  +++++L+ G C   +  +    L 
Sbjct: 400 KFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLR 459

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E +++  +KP  +T   +I   C    +    ++L +M+  G  P  +TY++LL    ++
Sbjct: 460 EMLEA-GIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQ 518

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             ++   MLL      GV+P+ + +  ++ G C
Sbjct: 519 GQMKNANMLLDAMLNLGVVPDDITYNILLEGHC 551



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 169/394 (42%), Gaps = 24/394 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST-- 94
           R+G+ S        +E +G    + V+ +   N         +A + F+LV    L    
Sbjct: 132 RKGKNSASSVFTSVLEARGTHQSNLVF-SVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPF 190

Query: 95  ------FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
                 F+ LM +  +S     A+     + + G   D   +  L+    K  K++    
Sbjct: 191 HSCGYLFDRLMKLNLTSP----AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQL 246

Query: 146 MF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +F       ++P  V FN LI    +SG +D+ F +   M    + V PD  T   L+  
Sbjct: 247 LFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMME--NRVFPDVFTYSVLING 304

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               GQ+D A +++  +    +      +T  IN    TG  +    +Y  M +KGV PD
Sbjct: 305 LCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPD 364

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  + LI+     G +  A +++ E   +G+     +Y+ L+  C    + + ALE+ +
Sbjct: 365 VITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRK 424

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    ++       ALI+  C   Q+ +    L +M   G+ P+  TY++++    +K 
Sbjct: 425 EMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKG 484

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           DV+ G  LL + + DG +P +V +  ++ G+C +
Sbjct: 485 DVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQ 518


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 140/611 (22%), Positives = 257/611 (42%), Gaps = 60/611 (9%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + SYN +I    R+G +S+  +L  +M ++G++     Y +    +CK++   K   
Sbjct: 224 SPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAEL 283

Query: 82  RFFKLVPN---PTLSTFNMLM---SVCASSKDSEGAFQVLRLVQEAGLKAD---CKLYTT 132
              +++ N   P   T+N ++   S+    K++ G F   R +   GL  D   C  Y +
Sbjct: 284 VLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMF---REMTRRGLMPDIFTCNSYMS 340

Query: 133 LITTCAKSGKVDAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
            +    KS +    F+++     KPD V ++ L+      G V    ++   M  E + +
Sbjct: 341 SLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSM--EGNGI 398

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
             DH     L+ A    G +D A  ++  + +  +      Y   I   S+ G    A  
Sbjct: 399 VADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMD 458

Query: 248 VYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGA 305
            ++ M   G+ PD +  ++LI  F  H   V+A  E++ E  ++GI     + ++S++ +
Sbjct: 459 KFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAK-ELISEMMSRGIPRPNTVFFNSIINS 517

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
                   +A ++++ +  I  +P V T N+LI       ++ K   VL  M S+G+ P+
Sbjct: 518 LCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPD 577

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
            +TYS LL    R   ++ GL+L  +    GV P  + +  I+               H 
Sbjct: 578 VVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIIL---------------HG 622

Query: 426 LSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 485
           L FN GR       T  A  +  E I +GT   +     +LG L      D    L + L
Sbjct: 623 L-FNDGR-------TVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKL 674

Query: 486 GVSADALKRSNLCSLIDGFGEYDPR--AFSLLEEAASFGIVPCVSFKEIPVVVDARKLEI 543
           G        + + ++ID   +   R  A  L +  ++ G+VP  S   + +    ++  +
Sbjct: 675 GAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSV 734

Query: 544 HTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGE------KTIDIAERTT 597
             A   + ++++  +   A  ++L N  I + +EK +I   G        KTI +   T 
Sbjct: 735 EEAD-NMFSLME--KSGCAPSSRLLNNIIRVLLEKGEISKAGNYLSKVDGKTISLEASTA 791

Query: 598 QAIAALLRRLG 608
             + +L  R G
Sbjct: 792 SLMLSLFSRKG 802



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 162/380 (42%), Gaps = 44/380 (11%)

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           A F  +C+ +   + A         PT+ T+N+LM  C  +      F +     + GLK
Sbjct: 100 ALFNRICREEARPRVAL--------PTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLK 151

Query: 125 ADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
            D                            +V N L+     +   D A +VL     E+
Sbjct: 152 TDV---------------------------IVANILLKCLCHAKRSDDAVNVLLHRMPEL 184

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDW 242
             V+PD I+   ++K+     +  RA ++   + K +   +P V  Y   I+   + G+ 
Sbjct: 185 -GVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEV 243

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
             AC+++ +M ++GV+PD V  S+ ID    A  ++ A  +L++  + G     ++Y+ +
Sbjct: 244 SKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCM 303

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +   S    W++   ++  M    L P + T N+ +++LC   +  +  E    M + G 
Sbjct: 304 IHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGH 363

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
            P+ +TYS+LL     +  V   L L +  + +G++ +  ++  +I      Y K   ++
Sbjct: 364 KPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDA----YGKRGMMD 419

Query: 423 EHVLSFN--SGRPQIENKWT 440
           E +L F     R  + + WT
Sbjct: 420 EAMLIFTQMQERGVMPDAWT 439


>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
 gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
          Length = 631

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 169/386 (43%), Gaps = 73/386 (18%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
           P + T+N+L+++C  SK  E A  + +  ++ G+  D   Y+ L+    K+G   K   +
Sbjct: 299 PDVFTYNLLIALC-KSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEV 357

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F N++     PD VV+N LI+  G+ G VD A ++L +MN +   + PD  T   ++   
Sbjct: 358 FYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRK--GIMPDCRTYNIVIDVL 415

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           ++ G+ ++A   + M+ +   K +P+V  Y   +N   +    + AC ++D+M     +P
Sbjct: 416 SSCGRYEKAYSFFGMMKRR--KHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMP 473

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D      LID    AG++E A E  Q A+                               
Sbjct: 474 DLTTFGTLIDTLAKAGRMEDALE--QSAR------------------------------- 500

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             +  +   P     NALI+  C   Q+ K  E+  DM      P++ITY+IL++   R+
Sbjct: 501 --LVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRR 558

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 439
               + + LL +   +G  P L  +  +I          R+L        S   Q+E+ +
Sbjct: 559 GHTSMAMELLQEMVREGHTPALATYNVLI----------RSL--------SMAGQVEDAY 600

Query: 440 TSLALMVYREAIVAGTIPTVEVVSKV 465
           T     +++E I  G  P ++  S +
Sbjct: 601 T-----LFKEMIAKGFNPDMQTYSAL 621



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 144/322 (44%), Gaps = 18/322 (5%)

Query: 31  SYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHAR----FFNVCKSQKAIKEAFRF 83
           +YN LI   +  ++ E + L ++ E+ G++ +D   ++     F    ++ KA++  +  
Sbjct: 303 TYNLLIALCKSKQLEEALTLFQEAEQGGVV-LDVFTYSYLMDAFGKAGRAAKALEVFYNM 361

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TTCAKS 140
            K    P    +N+L+S        + A ++L  +   G+  DC+ Y  +I   ++C + 
Sbjct: 362 QKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRY 421

Query: 141 GKVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            K  + F  +K     PD V +N L+    +    D A D+  EM A  +   PD  T G
Sbjct: 422 EKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQA--NKCMPDLTTFG 479

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            L+   A AG+++ A E    + K        +Y   I+   ++G  +    ++ DM + 
Sbjct: 480 TLIDTLAKAGRMEDALEQSARLVKMGHAPNSYIYNALISGFCRSGQVDKGYELFQDMIEC 539

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
              PD +  + L+      G    A E+LQE   +G +  + +Y+ L+ + S A   + A
Sbjct: 540 SCFPDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDA 599

Query: 316 LELYEHMKSIKLKPTVSTMNAL 337
             L++ M +    P + T +AL
Sbjct: 600 YTLFKEMIAKGFNPDMQTYSAL 621



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 88/378 (23%), Positives = 151/378 (39%), Gaps = 43/378 (11%)

Query: 40  RISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           R+ + + L +DM        D V Y+      CK+    +    F +L       P   +
Sbjct: 104 RVEQAMTLFDDMRETCDCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQEGSCKPNAVS 163

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-TTCAKSGKVDAMFENVKPD 153
           F+ L+        +  A  V + +  AGLKAD  +  TLI  TC                
Sbjct: 164 FDTLVIFLCKMSRATDALAVFQEMLGAGLKADVNVCNTLIHCTC---------------- 207

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
                       + G + +A  +L  M A  H    D  T G L+ A   AGQ+      
Sbjct: 208 ------------RLGMLRQARRLLHHMTA--HACARDAFTYGILVNAHCRAGQMHEVASF 253

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
            ++        +   Y   I    + G    A  +++    K  +PD VF   L+     
Sbjct: 254 MELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPD-VFTYNLLIALCK 312

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           + ++E A  + QEA+  G+ + + +YS LM A   A    KALE++ +M+     P    
Sbjct: 313 SKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVV 372

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI---LLVACERKDDVEVGLMLLS 390
            N LI+ L    ++ + +E+L DM   G+ P+  TY+I   +L +C R +       ++ 
Sbjct: 373 YNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSSCGRYEKAYSFFGMMK 432

Query: 391 QAKEDGVIPNLVMFKCII 408
           + K     P++V +  ++
Sbjct: 433 RRKHS---PDVVTYNTLL 447



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/310 (21%), Positives = 123/310 (39%), Gaps = 39/310 (12%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           +  PD V +N LI    ++G  DRA D+   +  E     P+ ++   L+       +  
Sbjct: 120 DCAPDVVAYNTLIAGYCKAGDGDRALDMFRRLKQE-GSCKPNAVSFDTLVIFLCKMSRAT 178

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A  V++ +    +K    V    I+C  + G    A  +   MT      D      L+
Sbjct: 179 DALAVFQEMLGAGLKADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILV 238

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +    AG++      ++ A++ G ++  ++Y+ ++          +A +L+E   + +  
Sbjct: 239 NAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESV 298

Query: 329 PTVSTMNALITALCDGDQL-----------------------------------PKTMEV 353
           P V T N LI ALC   QL                                    K +EV
Sbjct: 299 PDVFTYNLLI-ALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEV 357

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             +M+  G  P+T+ Y++L+    ++  V+  L LL      G++P+   +  +I + S 
Sbjct: 358 FYNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVIDVLSS 417

Query: 414 --RYEKARTL 421
             RYEKA + 
Sbjct: 418 CGRYEKAYSF 427



 Score = 45.4 bits (106), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 85/412 (20%), Positives = 154/412 (37%), Gaps = 73/412 (17%)

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
           PVD    T  A++K     G+ +   E+   + +  +  +    T  I    + GD + A
Sbjct: 15  PVDAH--TATAMVKEVCKLGRTELLAELLAELRQKGVGLSEVTCTECIQAFGRAGDLDAA 72

Query: 246 CSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLM 303
             + DDM +     PD V  +A + +     +VE A  +  + +     +  +++Y++L+
Sbjct: 73  MGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTLI 132

Query: 304 GACSNAKNWQKALELYEHMK---SIK---------------------------------L 327
                A +  +AL+++  +K   S K                                 L
Sbjct: 133 AGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLVIFLCKMSRATDALAVFQEMLGAGL 192

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           K  V+  N LI   C    L +   +L  M +     +  TY IL+ A  R   +     
Sbjct: 193 KADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHACARDAFTYGILVNAHCRAGQMHEVAS 252

Query: 388 LLSQAKEDGVIPNLVMFKCIIG---MCSRRYEKARTLNE--------HVLSFNSGRPQIE 436
            +  A+ DG   + V +  II     C R  E  +             V ++N      +
Sbjct: 253 FMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLIALCK 312

Query: 437 NKWTSLALMVYREAIVAGTIPTVEVVSKVLG----------CLQLPYNADIRERLVENLG 486
           +K    AL +++EA   G +  V   S ++            L++ YN       ++  G
Sbjct: 313 SKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYN-------MQKAG 365

Query: 487 VSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP-CVSFKEIPVVVD 537
              D +  + L S +   G+ D  A  LLE+    GI+P C ++    +V+D
Sbjct: 366 CMPDTVVYNVLISCLGKQGKVD-EALELLEDMNRKGIMPDCRTYN---IVID 413


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/439 (22%), Positives = 186/439 (42%), Gaps = 61/439 (13%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-------VCKS 73
           V+  + +YN LI    R  R ++   LL DM RK ++  ++V +    N       V  +
Sbjct: 259 VNADVCTYNMLIHDLCRSNRSAKGYLLLRDM-RKRMIHPNEVTYNTLLNGFSNEGKVLIA 317

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           ++ + E   F  L PN    TFN L+    S  + + A ++  +++  GL      Y  L
Sbjct: 318 RQLLNEMLTF-GLSPNHV--TFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVL 374

Query: 134 ITTCAKSGKVD---AMFENVKPD-----RVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +    K+ + D     +  +K +     R+ +  +I    ++G +D A  +L EM+ +  
Sbjct: 375 LDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKD-- 432

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            +DPD +T  AL+      G++  A+E+   I++  +     +Y+  I  C + G  +  
Sbjct: 433 GIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKET 492

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +Y+ M  +G  PD    + L+     AGKV  A E ++   + GI    +S+  L+  
Sbjct: 493 IRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLING 552

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTM------------------------------- 334
             ++    KA  +++ M  +   PT  T                                
Sbjct: 553 YGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVD 612

Query: 335 ----NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
               N LITA+C    L K + +  +M    + P++ TY+ L+    RK    + ++   
Sbjct: 613 TVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAK 672

Query: 391 QAKEDG-VIPNLVMFKCII 408
           +A+  G ++PN VM+ C +
Sbjct: 673 EAEARGNLVPNKVMYTCFV 691



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/363 (22%), Positives = 151/363 (41%), Gaps = 47/363 (12%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P ++TFN+L++V  +    + +  +++ ++++G       Y T++    K G+  A  E 
Sbjct: 191 PDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V  D   +N LI    +S    + + +L +M   +  + P+ +T   L+   
Sbjct: 251 LDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRM--IHPNEVTYNTLLNGF 308

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           +N G+V  AR++   +  + +      +   I+     G+++ A  ++  M  KG+I  E
Sbjct: 309 SNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTE 368

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
           V    L+D      + + A       K  G+ VG I+Y+ ++ G C N     +A+ +  
Sbjct: 369 VSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGF-LDEAVVMLN 427

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-- 378
            M    + P + T +ALI   C   +L    E++  +  +GL PN I YS L+  C R  
Sbjct: 428 EMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMG 487

Query: 379 ------------------KDDVEVGLMLLSQAK---------------EDGVIPNLVMFK 405
                              D     +++ S  K                DG++PN V F 
Sbjct: 488 CLKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFD 547

Query: 406 CII 408
           C+I
Sbjct: 548 CLI 550



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 172/426 (40%), Gaps = 53/426 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN----VCKSQKAIKEAFRFFKLVPNP 90
           L + G + E + +L +M + G+ D D V ++   N    V + + A +   R +++  +P
Sbjct: 413 LCKNGFLDEAVVMLNEMSKDGI-DPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSP 471

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
               ++ L+  C      +   ++   +   G   D   +  L+T+  K+GKV    E +
Sbjct: 472 NGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVAEAEEFM 531

Query: 151 K--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +        P+ V F+ LI   G SG   +AF V  EM    H   P   T G+L+K   
Sbjct: 532 RCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGH--HPTFFTYGSLLKGLC 589

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-- 260
             G +  A +  K +          +    I    ++G+ + A S++ +M ++ ++PD  
Sbjct: 590 KGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSF 649

Query: 261 ----------------------------------EVFLSALIDFAGHAGKVEAAFEILQE 286
                                             +V  +  +D    AG+ +A F   Q+
Sbjct: 650 TYTSLISGLCRKGKTVIAILFAKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQ 709

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               G++  +++ ++++   S     +K  +L   M +    P ++T N L+        
Sbjct: 710 MDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKH 769

Query: 347 LPKTMEVLSDMKSLGLCPNTIT-YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           +  +  +   M   G+ P+ +T YSI+L  CE  + +E+GL +L      GV  +   F 
Sbjct: 770 VSTSFMLYRSMILSGILPDKLTCYSIILGICE-SNMLEIGLKILKAFICRGVEVDRHTFN 828

Query: 406 CIIGMC 411
            +I  C
Sbjct: 829 MLISKC 834



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 12/218 (5%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI------AINCCSQTGDWEFACSVYD 250
           L++     G +  + E+++++  Y     P VYT        +  C     W F      
Sbjct: 129 LIRVYLREGMIQDSLEIFRLMGLYGF--NPSVYTCNAILGSIVKSCEDVSVWSF----LK 182

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +M K+ + PD    + LI+     G  + +  ++Q+ +  G +  I++Y++++       
Sbjct: 183 EMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKG 242

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            ++ A+EL +HM    +   V T N LI  LC  ++  K   +L DM+   + PN +TY+
Sbjct: 243 RFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYN 302

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            LL     +  V +   LL++    G+ PN V F  +I
Sbjct: 303 TLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALI 340



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/424 (18%), Positives = 169/424 (39%), Gaps = 53/424 (12%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI------KEAFRFFKLVP 88
            + + G + + + L  +M ++ +L     Y +    +C+  K +      KEA     LVP
Sbjct: 623  MCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTVIAILFAKEAEARGNLVP 682

Query: 89   NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----D 144
            N  + T    +     +   +  F   + + + GL  D      +I   ++ GK+    D
Sbjct: 683  NKVMYT--CFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHD 740

Query: 145  AMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             +FE    N  P+   +N L+    +   V  +F +   M   +  + PD +T  +++  
Sbjct: 741  LLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFMLYRSM--ILSGILPDKLTCYSIILG 798

Query: 201  CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--WEF-------------- 244
               +  ++   ++ K      ++     + + I+ C   G+  W F              
Sbjct: 799  ICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGISLD 858

Query: 245  --ACS-----------------VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
               C                  V  +M+K+G+ P+      L++     G ++ AF + +
Sbjct: 859  KNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKE 918

Query: 286  EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
            E     I    ++ S+++ A +      +A  L   M  +KL PT+++   L+   C   
Sbjct: 919  EMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNG 978

Query: 346  QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
             + + +E+   M + GL  + ++Y++L+     K D+ +   L  + K DG + N+  +K
Sbjct: 979  NVTEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMAIAFELFEEMKRDGFLANVTTYK 1038

Query: 406  CIIG 409
             ++G
Sbjct: 1039 ALVG 1042



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/287 (20%), Positives = 126/287 (43%), Gaps = 16/287 (5%)

Query: 141 GKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT----IGA 196
           G + A +     +  VF+ LI    + G +  + ++   M   ++  +P   T    +G+
Sbjct: 110 GALMATYRLCNSNPSVFDILIRVYLREGMIQDSLEIFRLMG--LYGFNPSVYTCNAILGS 167

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTK 254
           ++K+C +       +E+ K       K  P+V  + I IN     G ++ +  +   M K
Sbjct: 168 IVKSCEDVSVWSFLKEMLKR------KICPDVATFNILINVLCAEGSFKKSSYLMQKMEK 221

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G  P  V  + ++ +    G+ +AA E+L     +G++  + +Y+ L+     +    K
Sbjct: 222 SGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAK 281

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
              L   M+   + P   T N L+    +  ++    ++L++M + GL PN +T++ L+ 
Sbjct: 282 GYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALID 341

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKAR 419
               + + +  L +    +  G+I   V +  ++ G+C    ++ AR
Sbjct: 342 GHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLAR 388



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 127/310 (40%), Gaps = 40/310 (12%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P     NA++ +  +S      +  L EM      + PD  T   L+      G   ++ 
Sbjct: 156 PSVYTCNAILGSIVKSCEDVSVWSFLKEMLKR--KICPDVATFNILINVLCAEGSFKKSS 213

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-------------- 257
            + + + K     T   Y   ++   + G ++ A  + D M  KGV              
Sbjct: 214 YLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDL 273

Query: 258 ---------------------IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
                                 P+EV  + L++   + GKV  A ++L E    G+S   
Sbjct: 274 CRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNH 333

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           +++++L+    +  N+++AL+++  M++  L  T  +   L+  LC   +          
Sbjct: 334 VTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMR 393

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY 415
           MK  G+C   ITY+ ++    +   ++  +++L++  +DG+ P++V +  +I G C  R 
Sbjct: 394 MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALINGFC--RV 451

Query: 416 EKARTLNEHV 425
            + +T  E V
Sbjct: 452 GRLKTAKEIV 461



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/315 (20%), Positives = 123/315 (39%), Gaps = 18/315 (5%)

Query: 129 LYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
           +YT  +    K+G+  A F          +  D V  NA+I    + G +++  D+L EM
Sbjct: 686 MYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEM 745

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQT 239
             +     P+  T   L+   +    V  +  +Y+ MI    +      Y+I +  C ++
Sbjct: 746 GNQNQ--GPNLTTYNILLHGYSKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGIC-ES 802

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
              E    +      +GV  D    + LI      G++  AF+++    + GIS+   + 
Sbjct: 803 NMLEIGLKILKAFICRGVEVDRHTFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTC 862

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
            +++   +    +Q++  +   M    + P       L+  LC    +     V  +M +
Sbjct: 863 DAIVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIA 922

Query: 360 LGLCPNTITYSIL---LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
             +CP  +  S +   L  C + D  E  L+L S  K   ++P +  F  ++ +  +   
Sbjct: 923 HKICPPNVAESAMVRALAKCGKAD--EASLLLRSMLKMK-LVPTIASFTTLMHLFCKNGN 979

Query: 417 KARTLNEHVLSFNSG 431
               L   V+  N G
Sbjct: 980 VTEALELRVVMSNCG 994


>gi|449521499|ref|XP_004167767.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g02830, chloroplastic-like [Cucumis sativus]
          Length = 855

 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 166/401 (41%), Gaps = 64/401 (15%)

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           +    +C   +  K A R+  ++P+  +  F   ++     +D + A+      +     
Sbjct: 200 SEVIKLCVDYRNPKMAIRYASILPHADI-LFCTTINEFGKKRDLKSAYIAYTESKANMNG 258

Query: 125 ADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDV 176
           ++  +Y T+I  C   G          D + +NV P+  VFN+L+       A D  +  
Sbjct: 259 SNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVTPNIFVFNSLMNV----NAHDLNYTF 314

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV----YTIA 232
               N +   V  D  +   L+KAC  AG+VD A+++Y+ +      G  ++    Y+  
Sbjct: 315 QLYKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYREVKHLETTGVLKLDVFTYSTI 374

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           +   +    W+ A  V +DM   GV P+ V  S+LI    ++G VE A ++ +E  + G 
Sbjct: 375 VKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCANSGLVELAIQLFEEMVSAGC 434

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMK----------------------------- 323
                  ++L+ AC   + + +A  L+   K                             
Sbjct: 435 EPNTQCCNTLLHACVEGRQFDRAFRLFRSWKEKELWDGIERKSSTDNNLDADSTSQLCTT 494

Query: 324 ----------------SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                           ++  KPT++T N L+ A   G        ++ +MKS+GL PN I
Sbjct: 495 KMPNAPSHVHQISFVGNLAFKPTITTYNILMKAC--GTDYYHAKALMEEMKSVGLTPNHI 552

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ++SIL+  C R  DVE  + +L+  +  GV P++V +   I
Sbjct: 553 SWSILVDICGRSHDVESAVQILTTMRMAGVDPDVVAYTTAI 593



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 133/301 (44%), Gaps = 35/301 (11%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENV 150
           T++ ++ V A +K  + A +V   +Q AG+  +   +++LI++CA SG V+    +FE +
Sbjct: 370 TYSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCANSGLVELAIQLFEEM 429

Query: 151 -----KPDRVVFNALITACGQSGAVDRAF------------DVLAEMNAEVHPVDPDHIT 193
                +P+    N L+ AC +    DRAF            D +   ++  + +D D  +
Sbjct: 430 VSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSWKEKELWDGIERKSSTDNNLDADSTS 489

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
                K       V +       +     K T   Y I +  C    D+  A ++ ++M 
Sbjct: 490 QLCTTKMPNAPSHVHQ----ISFVGNLAFKPTITTYNILMKACGT--DYYHAKALMEEMK 543

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL------MGACS 307
             G+ P+ +  S L+D  G +  VE+A +IL   +  G+   +++Y++       +    
Sbjct: 544 SVGLTPNHISWSILVDICGRSHDVESAVQILTTMRMAGVDPDVVAYTTAIKVSIPLAVLV 603

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS---DMKSLGLCP 364
              NW+ A  L+E MK  +++P + T + L+ A      L +  + L+   DM+  G   
Sbjct: 604 LKXNWKLAFSLFEEMKGFEIQPNLVTYSTLLRARSTYGSLHEVQQCLAIYQDMRKSGFKS 663

Query: 365 N 365
           N
Sbjct: 664 N 664


>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
          Length = 1161

 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 142/318 (44%), Gaps = 10/318 (3%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
            P  +++N+LM           +  + + +   G++ D   Y  LI   ++ G +D     
Sbjct: 784  PNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKF 843

Query: 145  ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                + E + PDR+VF+ LITA  +   +  A  V   M   +H + P   T  A++   
Sbjct: 844  LEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQVFNCMKW-LH-MSPSSKTFSAMINGL 901

Query: 202  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               G +D + +V   + +  ++     Y   +N   + G+ + A  + ++M   G++P E
Sbjct: 902  IRKGYLDHSHKVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAE 961

Query: 262  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
            V  S++I      GK+E A  +       G+   + ++++LM +         AL L   
Sbjct: 962  VAESSIIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRL 1021

Query: 322  MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
            M+  +L+  V + N LIT LC    +   +++  +MKS GL PN  TY  L  A      
Sbjct: 1022 MELCRLRVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTGAMYSTGR 1081

Query: 382  VEVGLMLLSQAKEDGVIP 399
            V+ G  LL   +E G+IP
Sbjct: 1082 VQNGEELLEDIEERGLIP 1099



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 177/418 (42%), Gaps = 26/418 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           S+NR+I     +G I     + +DM R G       Y      +C+    + +A +F   
Sbjct: 577 SFNRIIDSYCHRGNIVGAFSVYDDMVRYGYSPNVCTYQNLLRGLCQGGHLV-QARQFMSC 635

Query: 87  VPNPTLS----TFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + +   +    TFN +L+ +C      E      ++++   L  D   YT L++   + G
Sbjct: 636 LLDIPFAIDEKTFNALLLGICRYGTLDEALDLCEKMIKNNCL-PDIHTYTILLSGFCRKG 694

Query: 142 KV-------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K+         M E  V PD V +  L+      G V  A  V  E+  +   +  D I 
Sbjct: 695 KILPALVILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFHEIICK-EGLYADCIA 753

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +LM     +  V+  + +   +++  +      Y I ++   + G +  +  +Y  M 
Sbjct: 754 YNSLMNGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMV 813

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +KG+ PD V    LI      G ++ A + L++   +GI    + +  L+ A S      
Sbjct: 814 RKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMH 873

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            AL+++  MK + + P+  T +A+I  L     L  + +VL +M  +GL PN   Y  L+
Sbjct: 874 NALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHEMLQVGLQPNHTHYIALV 933

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNS 430
            A  R  +++    L  + K  G++P  V    II G+C     +   L E V+ F+S
Sbjct: 934 NAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLC-----RCGKLEEAVIVFSS 986



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/398 (20%), Positives = 178/398 (44%), Gaps = 20/398 (5%)

Query: 29   LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA-FRF 83
            +H+Y  L+    R+G+I   + +L+ M  KG++  D V +    N   ++  +K A + F
Sbjct: 680  IHTYTILLSGFCRKGKILPALVILQMMLEKGVVP-DTVAYTCLLNGLINEGQVKAASYVF 738

Query: 84   FKLVPNPTLST----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             +++    L      +N LM+    S++     +++  + +  +  +   Y  L+    K
Sbjct: 739  HEIICKEGLYADCIAYNSLMNGYLKSRNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVK 798

Query: 140  SGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
             G+             + ++PD V +  LI    + G +D A   L +M  E   + PD 
Sbjct: 799  RGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLE--GIFPDR 856

Query: 192  ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
            +    L+ A +   ++  A +V+  +   ++  + + ++  IN   + G  + +  V  +
Sbjct: 857  LVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKVLHE 916

Query: 252  MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
            M + G+ P+     AL++     G+++ AF + +E K  GI    ++ SS++        
Sbjct: 917  MLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGK 976

Query: 312  WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             ++A+ ++  M    + PTV+T   L+ +LC   ++   + +   M+   L  + ++Y++
Sbjct: 977  LEEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELCRLRVDVVSYNV 1036

Query: 372  LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            L+    +   +   L L  + K  G+ PN+  +  + G
Sbjct: 1037 LITGLCKDKHISDALDLYGEMKSKGLWPNITTYITLTG 1074



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 160/353 (45%), Gaps = 17/353 (4%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF---- 147
           ++T N+L++   ++ +   A  +L+ ++   + ++   Y T++    K G+  A      
Sbjct: 226 VTTCNILLNSLCTNGEFRKAEDMLQKMKSCHI-SNSVTYNTILHWYVKKGRFKAALCVLE 284

Query: 148 ----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
               ++V+ D   +N +I    +     RAF +L  M  +   + PD  T   L+     
Sbjct: 285 DMERDSVQADVYTYNIMIDKLCRIKRSTRAFLLLKRMRKD--DLTPDECTYNTLINGFFR 342

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G+++ AR V+  + + N+  +   YT  I+   +    + A S+  +M   GV+P E+ 
Sbjct: 343 EGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRIDKALSILSEMQITGVMPSELT 402

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            SAL++       +  A  ++++ K++GI++     + L+          KA ++ + M 
Sbjct: 403 YSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILIDGFCQVGEISKAKQILKSMF 462

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              + P V T +ALI  +C   ++ +T E+LS M+  G+ PN + Y+ L+    +   V+
Sbjct: 463 EDGIDPDVITYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVK 522

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII------GMCSRRYEKARTLNEHVLSFNS 430
             L         G++ N V+   ++      GM +      + ++   +SF+S
Sbjct: 523 EALKHFVDIYRRGLVANPVIHNALLHAFYREGMITEAEHFRQYMSRMNISFDS 575



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 98/462 (21%), Positives = 179/462 (38%), Gaps = 88/462 (19%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK--- 85
           LH Y   +++GR    + +LEDMER  +      Y+     +C+ +++ + AF   K   
Sbjct: 267 LHWY---VKKGRFKAALCVLEDMERDSVQADVYTYNIMIDKLCRIKRSTR-AFLLLKRMR 322

Query: 86  ---LVPN---------------------------------PTLSTFNMLMSVCASSKDSE 109
              L P+                                 P+++T+  ++     ++  +
Sbjct: 323 KDDLTPDECTYNTLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTMIDGYCRNRRID 382

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKS---GKVDAMFENVKPDRVVFNA-----LI 161
            A  +L  +Q  G+      Y+ L+    K    G    + E++K   +  N      LI
Sbjct: 383 KALSILSEMQITGVMPSELTYSALLNGYCKVSMLGPAIYLMEDLKSRGITINKTMRTILI 442

Query: 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
               Q G + +A  +L  M  +   +DPD IT  AL+       ++   +E+   + K  
Sbjct: 443 DGFCQVGEISKAKQILKSMFED--GIDPDVITYSALINGMCRMAKMHETKEILSRMQKSG 500

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           I     +YT  I    + G  + A   + D+ ++G++ + V  +AL+      G +  A 
Sbjct: 501 ILPNDVLYTTLICYYCKAGYVKEALKHFVDIYRRGLVANPVIHNALLHAFYREGMITEAE 560

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
              Q      IS   +S++ ++ +  +  N   A  +Y+ M      P V T   L+  L
Sbjct: 561 HFRQYMSRMNISFDSVSFNRIIDSYCHRGNIVGAFSVYDDMVRYGYSPNVCTYQNLLRGL 620

Query: 342 CDGDQLPKTMEVLS---------DMKS-----LGLC---------------------PNT 366
           C G  L +  + +S         D K+     LG+C                     P+ 
Sbjct: 621 CQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICRYGTLDEALDLCEKMIKNNCLPDI 680

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            TY+ILL    RK  +   L++L    E GV+P+ V + C++
Sbjct: 681 HTYTILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYTCLL 722


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/460 (22%), Positives = 206/460 (44%), Gaps = 26/460 (5%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R F++ P P   + N L+   +     + + +  + +  AG+K     Y  +I    K G
Sbjct: 13  RKFRVFPKP--RSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEG 70

Query: 142 KVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            ++   ++F  +K     PD V +N+LI   G+ G +D    +  +M       DPD IT
Sbjct: 71  DLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDA--DCDPDVIT 128

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+       ++ +A E    +    +K     Y+  I+   + G  + A   + DM 
Sbjct: 129 YNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMR 188

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +  + P+E   ++LID    AG +  A ++++E    GI + +++Y++L+         +
Sbjct: 189 RVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMK 248

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A E++  M +  + P   T  AL+       ++    ++L +MK   + P+ + Y  +L
Sbjct: 249 EAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTIL 308

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTLNEHVLSFNSG 431
                +  +E   +L+ + KE G+  N V++  ++     S +  +A TL E +L    G
Sbjct: 309 WGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDG 368

Query: 432 RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL------GCLQLPYNADIRERLVENL 485
             +  N    +A  ++ E +  G +P     + ++      G LQ   N  +R+R++E +
Sbjct: 369 LCK--NNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALN--LRDRMIE-I 423

Query: 486 GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
           G+  D    + L   +   G+   +A +LL+E    G++P
Sbjct: 424 GMELDLHAYTALIWGLSHSGQVQ-KARNLLDEMIGKGVLP 462



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/394 (21%), Positives = 172/394 (43%), Gaps = 31/394 (7%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D    + +YN LI    +  R+ +  + L +M+  GL   + V ++ F +    +  ++E
Sbjct: 121 DCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGL-KPNVVTYSTFIDAFCKEGMLQE 179

Query: 80  AFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A +FF    ++   P   T+  L+     + +   A +++  + +AG+K +   YT L+ 
Sbjct: 180 AIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLD 239

Query: 136 TCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              + G++    E         V P++  + AL+    ++  ++ A D+L EM  +   +
Sbjct: 240 GLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKC--I 297

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            PD +  G ++    N  +++ A+ +   I +  I     +YT  ++   ++G    A +
Sbjct: 298 KPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALT 357

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           + ++M              L+D        E A ++  E  ++G+    I+Y++L+    
Sbjct: 358 LLEEMLD------------LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNM 405

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
              N Q+AL L + M  I ++  +    ALI  L    Q+ K   +L +M   G+ P+ +
Sbjct: 406 KHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEV 465

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
            Y  L+        V+  L L ++  + G+I  L
Sbjct: 466 VYMCLIKKYYALGKVDEALELQNEMAKRGMITGL 499



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 92/202 (45%)

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           ++ A E +  + K+ +   P      ++  S+ G  + +   + DM   G+       + 
Sbjct: 2   LEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           +ID+    G +E A  +  + K  G +  I++Y+SL+          + + ++E MK   
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 121

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
             P V T NALI   C  +++PK  E L +MK+ GL PN +TYS  + A  ++  ++  +
Sbjct: 122 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAI 181

Query: 387 MLLSQAKEDGVIPNLVMFKCII 408
                 +   + PN   +  +I
Sbjct: 182 KFFVDMRRVALTPNEFTYTSLI 203



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/442 (21%), Positives = 176/442 (39%), Gaps = 73/442 (16%)

Query: 2   QDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLL 57
           ++G   M +  +   K A +  D+     +YN LI    + G + ECI + E M+     
Sbjct: 68  KEGDLEMARSLFTQMKEAGFTPDIV----TYNSLIDGHGKLGLLDECICIFEQMK----- 118

Query: 58  DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           D D          C                 +P + T+N L++     +    AF+ L  
Sbjct: 119 DAD----------C-----------------DPDVITYNALINCFCKFERMPKAFEFLHE 151

Query: 118 VQEAGLKADCKLYTTLITTCAKSGK--------VDAMFENVKPDRVVFNALITACGQSGA 169
           ++  GLK +   Y+T I    K G         VD     + P+   + +LI A  ++G 
Sbjct: 152 MKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGN 211

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +  A  ++ E+      +  + +T  AL+      G++  A EV++ +    +    E Y
Sbjct: 212 LAEALKLVEEILQA--GIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETY 269

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           T  ++   +  + E+A  +  +M +K + PD +    ++    +  ++E A  ++ E K 
Sbjct: 270 TALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKE 329

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI-------------------KLKPT 330
            GI+   + Y++LM A   +    +AL L E M  +                    L   
Sbjct: 330 SGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKG 389

Query: 331 VSTMNALITALCDGD----QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           +       TAL DG+     L + + +   M  +G+  +   Y+ L+        V+   
Sbjct: 390 MMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKAR 449

Query: 387 MLLSQAKEDGVIPNLVMFKCII 408
            LL +    GV+P+ V++ C+I
Sbjct: 450 NLLDEMIGKGVLPDEVVYMCLI 471



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 132/310 (42%), Gaps = 44/310 (14%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LI    + G ++E + L+E++ + G+      Y A    +C+  + +KEA   F+ 
Sbjct: 198 TYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEEGR-MKEAEEVFRA 256

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-TTCAKSG 141
           + N    P   T+  L+     +K+ E A  +L+ ++E  +K D  LY T++   C +S 
Sbjct: 257 MLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESR 316

Query: 142 KVDAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD------ 188
             +A           +  + V++  L+ A  +SG    A  +L EM   +  VD      
Sbjct: 317 LEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEM---LDLVDGLCKNN 373

Query: 189 ------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
                             PD I   AL+      G +  A  +   + +  ++     YT
Sbjct: 374 CFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYT 433

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             I   S +G  + A ++ D+M  KGV+PDEV    LI      GKV+ A E+  E   +
Sbjct: 434 ALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKR 493

Query: 291 GISVGIISYS 300
           G+  G+  ++
Sbjct: 494 GMITGLSDHA 503


>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
          Length = 1031

 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 172/383 (44%), Gaps = 22/383 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVP 88
           + + G + E +DL E M  + +L     Y       CK  K I  A    +      LVP
Sbjct: 609 ICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGK-IVPALILLQMMLEKGLVP 667

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
           + T++   +L  +    +    ++    ++ + GL ADC  Y +++    K G+++    
Sbjct: 668 D-TIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIER 726

Query: 146 ----MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
               M EN V P    +N L+    + G + R   +  +M  E   + PD++T   L+  
Sbjct: 727 LMRNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKE--GIKPDNVTYRLLIFG 784

Query: 201 CANAGQVDRA-REVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
               G ++ A + + KM+  +  ++     Y   IN   + GD + A  + +DM   GV+
Sbjct: 785 LCEYGLIEIAVKFLEKMVLEESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVV 844

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALE 317
           P EV  S+++      GKVE A  +       G+   I ++++LM G C   K    A  
Sbjct: 845 PSEVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFK-IDDAFH 903

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L + M+S  LK  V T N LIT LC+   +   +++  +MKS GL PN  TY  L  A  
Sbjct: 904 LKQLMESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGAMY 963

Query: 378 RKDDVEVGLMLLSQAKEDGVIPN 400
               ++ G  LL   ++ G++P+
Sbjct: 964 ATGTMQDGEKLLKDIEDRGIVPS 986



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 178/441 (40%), Gaps = 67/441 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L  QG++S+   +L+ M+   L   + V +    N    +   K A R    +     
Sbjct: 238 NSLCTQGKLSKAESMLQKMKNCRL--PNAVTYNTILNWYVKKGRCKSALRILDDMEKNGI 295

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
              L T+N+++      K S  A+ +L+ ++E  L  D   Y TLI      GK++    
Sbjct: 296 EADLYTYNIMIDKLCKLKRSARAYLLLKRMREVNLTPDECSYNTLIHGFFGEGKINLAIY 355

Query: 145 ----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHP------------- 186
                + +++KP    + ALI    ++G  D A  VL EM    V P             
Sbjct: 356 IFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPREVSKAKQILKCM 415

Query: 187 ----VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
               +DPD IT  AL+      G +   +E+   + K  +     +YT  +    + G  
Sbjct: 416 LADGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHA 475

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           + A   + D+ + G++ + V  +AL+      G +  A +  Q      IS  + S++ +
Sbjct: 476 KEALKYFVDIYRSGLVANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCI 535

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS------- 355
           + +     N  +A  +Y++M      P + T  +L+  LC G  L +  E +        
Sbjct: 536 IDSYCQRGNVLEAFSVYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKAC 595

Query: 356 --DMKSL-----GLC---------------------PNTITYSILLVACERKDDVEVGLM 387
             D K+L     G+C                     P+T TY+ILL    ++  +   L+
Sbjct: 596 AIDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVPALI 655

Query: 388 LLSQAKEDGVIPNLVMFKCII 408
           LL    E G++P+ + + C++
Sbjct: 656 LLQMMLEKGLVPDTIAYTCLL 676



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 113/528 (21%), Positives = 228/528 (43%), Gaps = 38/528 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N + + G I E  ++L  M++ G+L  + +Y    F  CK+  A KEA ++F  +    L
Sbjct: 432 NGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHA-KEALKYFVDIYRSGL 490

Query: 93  STFNMLMSVCASSKDSEG----AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DA 145
              +++ +    S   EG    A Q  + +    +  D   +  +I +  + G V    +
Sbjct: 491 VANSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFS 550

Query: 146 MFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +++N+      PD   + +L+    Q G + +A + +  +  +   +D    T+  L+  
Sbjct: 551 VYDNMVRHGWPPDICTYGSLLRGLCQGGHLVQAKEFMVYLLEKACAIDEK--TLNTLLVG 608

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G +D A ++ + +   NI      YTI ++   + G    A  +   M +KG++PD
Sbjct: 609 ICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVPALILLQMMLEKGLVPD 668

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKNWQKALELY 319
            +  + L++   + G+V+AA  + QE    +G+    I+Y+S+M          +   L 
Sbjct: 669 TIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNGYLKGGQINEIERLM 728

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
            +M   ++ P+ ++ N L+       QL +T+ +  DM   G+ P+ +TY +L+      
Sbjct: 729 RNMHENEVYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEY 788

Query: 380 DDVEVGLMLLSQA--KEDGVIPN------LVMFKCIIGMCSRRYEKARTLN------EHV 425
             +E+ +  L +   +E G+ P       L+  KC +G     +E    +         V
Sbjct: 789 GLIEIAVKFLEKMVLEESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEV 848

Query: 426 LSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR---ERLV 482
              +  R   +      A++V+   + AG +PT+   + ++  L   +  D     ++L+
Sbjct: 849 AESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLM 908

Query: 483 ENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCVS 528
           E+ G+  D +  +    LI G         A  L EE  S G++P ++
Sbjct: 909 ESCGLKVDVVTYN---VLITGLCNKKCICDALDLYEEMKSKGLLPNIT 953



 Score = 39.3 bits (90), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 104/265 (39%), Gaps = 30/265 (11%)

Query: 184 VHPVDPDHITIGALMK------ACANAGQVDRA------REVYKMIHKYNIKGTPEVYTI 231
           VH V+   IT+ A+ +          +G++D+A      R +  ++ +  +     +Y +
Sbjct: 54  VHGVESSIITVLAMQRWETLSQMAYKSGKLDKAHGKLALRMLDSIVQQSGLDRITHIYCM 113

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL-------------IDFAGHA---- 274
           A++   Q      A SV   +   G     +F S L             +D   +A    
Sbjct: 114 AVHILVQAQMPSQAMSVLRHLALTGFSCSAIFSSLLRTISRCDPTNLFSVDLLVNAYVKE 173

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           GKV  A   +      G    + S ++++ A       +      +     K    V+T 
Sbjct: 174 GKVLDAAAAIFFMDECGFKASLFSCNNILNALVGINKSEYVWLFLKESLDRKFPLDVTTC 233

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N ++ +LC   +L K   +L  MK+  L PN +TY+ +L    +K   +  L +L   ++
Sbjct: 234 NIVLNSLCTQGKLSKAESMLQKMKNCRL-PNAVTYNTILNWYVKKGRCKSALRILDDMEK 292

Query: 395 DGVIPNLVMFKCIIGMCSRRYEKAR 419
           +G+  +L  +  +I    +    AR
Sbjct: 293 NGIEADLYTYNIMIDKLCKLKRSAR 317


>gi|356554513|ref|XP_003545590.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g25630-like [Glycine max]
          Length = 632

 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/389 (24%), Positives = 172/389 (44%), Gaps = 16/389 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N LI+ G+  E I + +++   G       Y     N   +QK  K       LV     
Sbjct: 80  NILIKSGKPQEAIVIFQNLIEGGHQPSLATY-TTLLNALTTQKYFKPIHSIVSLVEEKQM 138

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P    FN L++  A S + E A +V++ ++E+GLK     Y TLI     +GK D   +
Sbjct: 139 KPDSIFFNALINAFAESGNMEDAKKVVQKMKESGLKPSACTYNTLIKGYGIAGKPDESMK 198

Query: 149 ---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                    NVKP+   +N LI A  +   +  A++V+ +M A    + PD +T   +  
Sbjct: 199 LLDLMSTEGNVKPNLKTYNMLIRALCKMENISEAWNVVYKMTAS--GMQPDVVTFNTIAT 256

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A A  G+  +A  +   + + ++K      TI I+   + G  + A      M   G+ P
Sbjct: 257 AYAQNGKTAQAEAMILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQP 316

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + + L++L++        +   E+L+  +   I   +I+YS++M A S A   +K  E+Y
Sbjct: 317 NLIVLNSLVNGFVDMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIY 376

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
            +M    +KP     + L        ++ K  E+L+ M   G+ PN + ++ ++      
Sbjct: 377 NNMLKSGVKPDAHAYSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCSV 436

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             ++  + +  +  E GV PNL  F+ +I
Sbjct: 437 GRMDNAMRVFDKMGEFGVSPNLKTFETLI 465



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 157/335 (46%), Gaps = 16/335 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------- 142
           P+L+T+  L++   + K  +    ++ LV+E  +K D   +  LI   A+SG        
Sbjct: 105 PSLATYTTLLNALTTQKYFKPIHSIVSLVEEKQMKPDSIFFNALINAFAESGNMEDAKKV 164

Query: 143 VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           V  M E+ +KP    +N LI   G +G  D +  +L  M+ E + V P+  T   L++A 
Sbjct: 165 VQKMKESGLKPSACTYNTLIKGYGIAGKPDESMKLLDLMSTEGN-VKPNLKTYNMLIRAL 223

Query: 202 ANAGQVDRAREVYKMIHKYNIKG-TPEVYTIAI--NCCSQTGDWEFACSVYDDMTKKGVI 258
               +++   E + +++K    G  P+V T        +Q G    A ++  +M +  + 
Sbjct: 224 C---KMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAMILEMQRNSLK 280

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+E   + +I      GKV+ A   +   K+ G+   +I  +SL+    +  +     E+
Sbjct: 281 PNERTCTIIISGYCREGKVQEALRFVYRMKDLGMQPNLIVLNSLVNGFVDMMDRDGVDEV 340

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            + M+  +++P V T + ++ A      L K  E+ ++M   G+ P+   YSIL     R
Sbjct: 341 LKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDAHAYSILAKGYVR 400

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
             ++E    +L+   + GV PN+V+F  +I G CS
Sbjct: 401 AQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCS 435



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/294 (23%), Positives = 131/294 (44%), Gaps = 12/294 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAM 146
           P L T+NML+      ++   A+ V+  +  +G++ D   + T+ T  A++GK    +AM
Sbjct: 211 PNLKTYNMLIRALCKMENISEAWNVVYKMTASGMQPDVVTFNTIATAYAQNGKTAQAEAM 270

Query: 147 F-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  ++KP+      +I+   + G V  A   +  M  +   + P+ I + +L+   
Sbjct: 271 ILEMQRNSLKPNERTCTIIISGYCREGKVQEALRFVYRM--KDLGMQPNLIVLNSLVNGF 328

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            +    D   EV K++ ++ I+     Y+  +N  SQ G  E    +Y++M K GV PD 
Sbjct: 329 VDMMDRDGVDEVLKLMEEFQIRPDVITYSTIMNAWSQAGFLEKCKEIYNNMLKSGVKPDA 388

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              S L      A ++E A E+L      G+   ++ +++++    +      A+ +++ 
Sbjct: 389 HAYSILAKGYVRAQEMEKAEEMLTVMTKSGVHPNVVIFTTVISGWCSVGRMDNAMRVFDK 448

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           M    + P + T   LI    +  Q  K   +L  M+   + P   T  ILLVA
Sbjct: 449 MGEFGVSPNLKTFETLIWGYAEAKQPWKAEGMLQIMEEFHVQPKKST--ILLVA 500


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 192/421 (45%), Gaps = 26/421 (6%)

Query: 7    NMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL---DMDKVY 63
            ++L + Y +        DV  Q+     L+  G + E   + E M   GL+   D   VY
Sbjct: 605  DLLVYTYKDWGSDPRVFDVFFQV-----LVDFGLLREARRVFEKMLNYGLVLSVDSCNVY 659

Query: 64   HARFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEA 121
              R    C         FR F  V     ++++N+++  VC   +  E A  +L L++  
Sbjct: 660  LTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKE-AHHLLLLMELK 718

Query: 122  GLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRA 173
            G   D   Y+T++    + G++D +++         +KP+  ++ ++I    +   +  A
Sbjct: 719  GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 778

Query: 174  FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTI 231
             +  +EM  +   + PD +    L+      G +  A + +  +H  +I  TP+V  YT 
Sbjct: 779  EEAFSEMIRQ--GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDI--TPDVLTYTA 834

Query: 232  AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
             I+   Q GD   A  ++ +M  KG+ PD V  + LI+    AG ++ AF +       G
Sbjct: 835  IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 894

Query: 292  ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
             S  +++Y++L+       +   A EL   M  I L+P + T N+++  LC    + + +
Sbjct: 895  CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 954

Query: 352  EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
            +++ + ++ GL  +T+TY+ L+ A  +  +++    +L +    G+ P +V F  ++ G 
Sbjct: 955  KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 1014

Query: 411  C 411
            C
Sbjct: 1015 C 1015



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 193/428 (45%), Gaps = 37/428 (8%)

Query: 25   VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQ 74
            V   + SYN +I    + GRI E   LL  ME KG       Y      + RF  + K  
Sbjct: 685  VCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVW 744

Query: 75   KAIKEAFRFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            K I E  +   L PN  +  S   +L  +C  ++  E   +++R     G+  D  +YTT
Sbjct: 745  KLI-EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR----QGILPDTVVYTT 799

Query: 133  LITTCAKSGKVDA----MFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
            LI    K G + A     +E    ++ PD + + A+I+   Q G +  A  +  EM  + 
Sbjct: 800  LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCK- 858

Query: 185  HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDW 242
              ++PD +T   L+     AG +  A  V+   H      +P V  YT  I+   + GD 
Sbjct: 859  -GLEPDSVTFTELINGYCKAGHMKDAFRVHN--HMIQAGCSPNVVTYTTLIDGLCKEGDL 915

Query: 243  EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
            + A  +  +M K G+ P+    +++++    +G +E A +++ E +  G++   ++Y++L
Sbjct: 916  DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 975

Query: 303  MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
            M A   +    KA E+ + M    L+PT+ T N L+   C    L    ++L+ M + G+
Sbjct: 976  MDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGI 1035

Query: 363  CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTL 421
             PN  T++ L+     +++++    +       GV P+   ++ ++ G C     KAR +
Sbjct: 1036 APNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHC-----KARNM 1090

Query: 422  NEHVLSFN 429
             E    F 
Sbjct: 1091 KEAWFLFQ 1098



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 168/409 (41%), Gaps = 20/409 (4%)

Query: 21   YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA------RFFNVCKSQ 74
            Y  DV       N   R G + +   L+E M+RKGL     +Y +      R   + +++
Sbjct: 720  YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 779

Query: 75   KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
            +A  E  R   L   P    +  L+       D   A +    +    +  D   YT +I
Sbjct: 780  EAFSEMIRQGIL---PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 836

Query: 135  TT-CAKSGKVDA------MF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
            +  C     V+A      MF + ++PD V F  LI    ++G +  AF V   M      
Sbjct: 837  SGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA--G 894

Query: 187  VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
              P+ +T   L+      G +D A E+   + K  ++     Y   +N   ++G+ E A 
Sbjct: 895  CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 954

Query: 247  SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
             +  +    G+  D V  + L+D    +G+++ A EIL+E   +G+   I++++ LM   
Sbjct: 955  KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 1014

Query: 307  SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
                  +   +L   M +  + P  +T N+L+   C  + L     +  DM S G+ P+ 
Sbjct: 1015 CLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDG 1074

Query: 367  ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
             TY  L+    +  +++    L  + K  G   ++  +  +I G   R+
Sbjct: 1075 KTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRK 1123



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 130/281 (46%), Gaps = 10/281 (3%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
            P   TF  L++    +   + AF+V   + +AG   +   YTTLI    K G +D+  E 
Sbjct: 862  PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 921

Query: 149  -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                    ++P+   +N+++    +SG ++ A  ++ E  A    ++ D +T   LM A 
Sbjct: 922  LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAA--GLNADTVTYTTLMDAY 979

Query: 202  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              +G++D+A+E+ K +    ++ T   + + +N     G  E    + + M  KG+ P+ 
Sbjct: 980  CKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNA 1039

Query: 262  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
               ++L+        ++AA  I ++  ++G+     +Y +L+     A+N ++A  L++ 
Sbjct: 1040 TTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 1099

Query: 322  MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
            MK      +VST + LI       +  +  EV   M+  GL
Sbjct: 1100 MKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGL 1140



 Score = 43.1 bits (100), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 5/154 (3%)

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELY 319
           +VF   L+DF    G +  A  + ++  N G+ + + S +  +   S +      A+ ++
Sbjct: 622 DVFFQVLVDF----GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVF 677

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
                + +   V++ N +I  +C   ++ +   +L  M+  G  P+ I+YS ++    R 
Sbjct: 678 REFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRF 737

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            +++    L+   K  G+ PN  ++  IIG+  R
Sbjct: 738 GELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCR 771


>gi|298711207|emb|CBJ32428.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 870

 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 109/479 (22%), Positives = 174/479 (36%), Gaps = 107/479 (22%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVC 102
           + EDM++K  +  D V +    N       +KEA      +     +P + TF  L+  C
Sbjct: 272 VFEDMKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEQGLSPDVVTFGTLIHAC 331

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--------MFENVKPDR 154
           A S   E A  +   +   GLK + + Y   I +C K+G            + + V+ DR
Sbjct: 332 AQSAKREPALALFAELVSRGLKPNLEAYKGCIVSCHKTGHYQQGLDLFNRMLADKVRMDR 391

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-------V 207
           VVFN  I  C Q     R   +L EM      V PD  +  + +  C  A Q       +
Sbjct: 392 VVFNTAIACCAQLKLWRRGVAMLDEMRE--RKVAPDQYSYNSAIYGCVKAQQSQQMTMVL 449

Query: 208 DRARE-----------------------------VYKMIHKYNIKGTPEVYTIAINCCSQ 238
            R RE                             +  M+ +  ++     +  A+  CS+
Sbjct: 450 ARMREDGFDPDVWTYSNLIRCLADSMLWRRAVGILDDMLLEGRVQPDAHCFNAAVRACSK 509

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G+W  A  +   M  +G+ PD+   ++LI   G++G+ E A  +L+E +  G  V  ++
Sbjct: 510 VGEWAEAERLVTGMRGQGLAPDKYTYNSLIYAYGNSGEWEKALSMLEEIRAAGFKVNCMA 569

Query: 299 YSSLMGACSNAKNWQKALEL----------------YEHMKS--IKLKPTVS-------- 332
           YS+ + AC  A  W++ALEL                Y H  S  ++  P  S        
Sbjct: 570 YSAAIKACDKAFQWERALELLDRMVERGGVKPNLFAYNHAMSACVRFSPPYSRRKELHGE 629

Query: 333 ------------------------------TMNALITALCDGDQLPKTMEVLSDMKSLG- 361
                                         + +AL+ AL  G +  + ++   D K    
Sbjct: 630 GGGQGAVSPTSFCVPANLPVFEAGIPGDWYSNHALLEALGRGGRWEEAVKTFEDKKRQAD 689

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 420
             P    Y  +L  CER       +  L +    GV P L  FK  +  C R   +  T
Sbjct: 690 RPPEQTCYKTMLRVCERAGFACQAVEYLKEMPAAGVPPTLSHFKQALKACERATSRGLT 748



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 98/451 (21%), Positives = 199/451 (44%), Gaps = 41/451 (9%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSG------KVDAMFEN--VKPDRVVFNALIT 162
           A  ++++++  GL      Y  L+  C   G      ++  M E+  + P+   +N++  
Sbjct: 129 ALGLVQMMRSEGLAPTAITYNVLLRLCGLGGCWATGLELMGMMEDEGITPNPYHYNSMFM 188

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
           A  +      A ++  +M A      P+ +T   L+       + D A  V K + + + 
Sbjct: 189 ALERGERWREAAELFRKMRA--CGTRPNALTYAPLIGVMDRCNKQDMAGAVLKEMLRESP 246

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAF 281
           + +   Y + +N C++   WE A  V++DM KK GV PD V  + +I+  G  G+V+ A 
Sbjct: 247 RDSTREYNLLLNACAKARKWEHAQLVFEDMKKKAGVKPDNVTYNTVINALGRCGRVKEAT 306

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
             L   K QG+S  ++++ +L+ AC+ +   + AL L+  + S  LKP +      I + 
Sbjct: 307 VHLHAMKEQGLSPDVVTFGTLIHACAQSAKREPALALFAELVSRGLKPNLEAYKGCIVSC 366

Query: 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
                  + +++ + M +  +  + + ++  +  C +      G+ +L + +E  V P+ 
Sbjct: 367 HKTGHYQQGLDLFNRMLADKVRMDRVVFNTAIACCAQLKLWRRGVAMLDEMRERKVAPDQ 426

Query: 402 VMFKCIIGMCSRRYEKAR-TLNEHVLSFNSGRPQIENKWTSLAL-------MVYREAIVA 453
             +   I  C +  +  + T+    +  +   P +   WT   L       M++R A+  
Sbjct: 427 YSYNSAIYGCVKAQQSQQMTMVLARMREDGFDPDV---WTYSNLIRCLADSMLWRRAV-- 481

Query: 454 GTIPTVEVVSKVLGCLQLPYNADIR-----------ERLVENL---GVSADALKRSNLCS 499
           G +  + +  +V       +NA +R           ERLV  +   G++ D    ++L  
Sbjct: 482 GILDDMLLEGRVQPDAHC-FNAAVRACSKVGEWAEAERLVTGMRGQGLAPDKYTYNSLIY 540

Query: 500 LIDGFGEYDPRAFSLLEEAASFGI-VPCVSF 529
                GE++ +A S+LEE  + G  V C+++
Sbjct: 541 AYGNSGEWE-KALSMLEEIRAAGFKVNCMAY 570



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 149/360 (41%), Gaps = 55/360 (15%)

Query: 31  SYNRLIRQGRISEC----IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+R   +  C    ++L+  ME +G+      Y++ F  + + ++  +EA   F+ 
Sbjct: 147 TYNVLLRLCGLGGCWATGLELMGMMEDEGITPNPYHYNSMFMALERGER-WREAAELFRK 205

Query: 87  V----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T+  L+ V       + A  VL+ +     +   + Y  L+  CAK+ K
Sbjct: 206 MRACGTRPNALTYAPLIGVMDRCNKQDMAGAVLKEMLRESPRDSTREYNLLLNACAKARK 265

Query: 143 VDA---MFEN------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            +    +FE+      VKPD V +N +I A G+ G V  A   L  M  +   + PD +T
Sbjct: 266 WEHAQLVFEDMKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEQ--GLSPDVVT 323

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
            G L+ ACA + + + A  ++  +    +K   E Y   I  C +TG ++    +++ M 
Sbjct: 324 FGTLIHACAQSAKREPALALFAELVSRGLKPNLEAYKGCIVSCHKTGHYQQGLDLFNRML 383

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
              V  D V                                    +++ +  C+  K W+
Sbjct: 384 ADKVRMDRVV-----------------------------------FNTAIACCAQLKLWR 408

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           + + + + M+  K+ P   + N+ I       Q  +   VL+ M+  G  P+  TYS L+
Sbjct: 409 RGVAMLDEMRERKVAPDQYSYNSAIYGCVKAQQSQQMTMVLARMREDGFDPDVWTYSNLI 468



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 107/246 (43%), Gaps = 28/246 (11%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKM-------IHKYNIKGTPEVYTIAINCCSQTGD 241
           P   T G  ++AC   G+V R R  +K        +   N++ +   Y  A+  C+ T  
Sbjct: 50  PTEETYGLALEAC---GKV-RKRWGFKAPLFLIQEMRDVNLEISLVHYRGAVTACALTRQ 105

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
                 + D+M  +GV  D                V+ A  ++Q  +++G++   I+Y+ 
Sbjct: 106 LSGVLPLLDEMRDRGVAAD---------------VVKRALGLVQMMRSEGLAPTAITYNV 150

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+  C     W   LEL   M+   + P     N++  AL  G++  +  E+   M++ G
Sbjct: 151 LLRLCGLGGCWATGLELMGMMEDEGITPNPYHYNSMFMALERGERWREAAELFRKMRACG 210

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKAR 419
             PN +TY+ L+   +R +  ++   +L +   +    +   +  ++  C  +R++E A+
Sbjct: 211 TRPNALTYAPLIGVMDRCNKQDMAGAVLKEMLRESPRDSTREYNLLLNACAKARKWEHAQ 270

Query: 420 TLNEHV 425
            + E +
Sbjct: 271 LVFEDM 276


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 185/407 (45%), Gaps = 25/407 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   ++G   +      +M  +G+L     Y +    +CK+Q   K       +V N   
Sbjct: 209 NGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVM 268

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------- 142
           P   T+N ++    SS   + A   L+ ++  G++ +   Y++L+    K+G+       
Sbjct: 269 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKI 328

Query: 143 VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGA 196
            D+M +  ++PD   +  L+      GA       L EM+A +     + + PDH     
Sbjct: 329 FDSMTKRGLEPDIATYRTLLQGYATKGA-------LVEMHALLDLMVRNGIQPDHHVFNI 381

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ A A   +VD+A  V+  + ++ +      Y   I+   ++G  + A   ++ M  +G
Sbjct: 382 LICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEG 441

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + P+ +  ++LI       K + A E++ E  ++GI +  I ++S++ +        ++ 
Sbjct: 442 LTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESE 501

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +L++ M  I +KP + T N LI   C   ++ +  ++L+ M S+G+ P+ +TY  L+   
Sbjct: 502 KLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGY 561

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 421
            R   ++  L L  +    GV PN++ +  I+     +RR   A+ L
Sbjct: 562 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 608



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 156/335 (46%), Gaps = 22/335 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           PT+ T+ +L+  C  +   +  F  L  V + G + D   +T L+   CA     DAM  
Sbjct: 90  PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMK 199
            ++        PD   +N L+           A ++L  M +       PD ++   ++ 
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGT-PEVYT----IAINCCSQTGDWEFACSVYDDMTK 254
                G  D+A   Y   H+   +G  P+V T    IA  C +Q  D   A  V + M K
Sbjct: 210 GFFKEGDSDKAYSTY---HEMLDRGILPDVVTYSSIIAALCKAQAMDK--AMEVLNTMVK 264

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG-ACSNAKNWQ 313
            GV+PD +  ++++     +G+ + A   L++ ++ G+   +++YSSLM   C N ++ +
Sbjct: 265 NGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTE 324

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A ++++ M    L+P ++T   L+        L +   +L  M   G+ P+   ++IL+
Sbjct: 325 -ARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILI 383

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            A  +++ V+  +++ S+ ++ G+ PN+V +  +I
Sbjct: 384 CAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVI 418



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 160/386 (41%), Gaps = 48/386 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + GR +E   + + M ++GL + D   +        ++ A+ E      L+     
Sbjct: 314 NYLCKNGRSTEARKIFDSMTKRGL-EPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 372

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-AMF 147
            P    FN+L+   A  +  + A  V   +++ GL  +   Y T+I    KSG VD AM 
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 432

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM------------NAEVHP-- 186
                  E + P+ +V+ +LI         D+A +++ EM            N+ +    
Sbjct: 433 YFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHC 492

Query: 187 -------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                              V PD IT   L+  C  AG++D A ++   +    +K    
Sbjct: 493 KEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIV 552

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y   IN   +    + A +++ +M   GV P+ +  + ++    H  +  AA E+    
Sbjct: 553 TYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSI 612

Query: 288 KNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
              G  + + +Y+ ++ G C N     +AL +++++    L+    T N +I AL    +
Sbjct: 613 TKSGTQLELSTYNIILHGLCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGALLKCGR 671

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSIL 372
           + +  ++ +   + GL P+  TYS++
Sbjct: 672 MDEAKDLFAAHSANGLVPDVRTYSLM 697


>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Brachypodium distachyon]
          Length = 858

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 174/438 (39%), Gaps = 28/438 (6%)

Query: 16  GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
           G + N     S  + +Y    R G ++E + +LE M+  GL      Y+A      K   
Sbjct: 227 GGYGNTVFANSALISAY---ARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGV 283

Query: 76  AIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            ++    +F+ +      P   TFN L+S C+ +   E A  +   +   G+  D   Y 
Sbjct: 284 DLRFTLGYFRQMLRDRLCPDRKTFNSLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYN 343

Query: 132 TLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           T I    K G +        D   +NVKP+ V ++ LI    +    D A  +  +M + 
Sbjct: 344 TFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKS- 402

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
              +  D +    ++     AG+      V   +    I+     Y   IN   + G  +
Sbjct: 403 -LGIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLD 461

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
               +  DM ++GV P  +  S LID    AG    AF +  + K  G+   ++ +SS +
Sbjct: 462 IVSFLVQDMRRRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFI 521

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
              +     + AL L   M  + +KP V T N +I A      L +      +M  +G+ 
Sbjct: 522 DTLAKNGLVEWALSLLNDMTEMGIKPNVVTYNTIIDAFGKSKVLSEEDPEAGEMGIVGVY 581

Query: 364 ---------PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR- 413
                    P T   S + V   R  ++   L L  +  + GV PN+V F  I+  CSR 
Sbjct: 582 NGQIIRAANPVTRGRSAIDVRMRRSQELYFILELFQKMVQQGVRPNVVTFSAILNACSRC 641

Query: 414 -RYEKARTLNEHVLSFNS 430
             +E A  L E +  F++
Sbjct: 642 NNFEDAALLLEQLRLFDN 659



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 133/323 (41%), Gaps = 75/323 (23%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    +QGR+     L++DM R+G+                              
Sbjct: 446 TYNSLINGYGKQGRLDIVSFLVQDMRRRGVA----------------------------- 476

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              P++ T++ L+ + + +     AF V    +E+GLK D  L+++ I T AK+G V+  
Sbjct: 477 ---PSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGLKPDVVLFSSFIDTLAKNGLVEWA 533

Query: 147 FE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                      +KP+ V +N +I A G+S        VL+E + E   +    +  G ++
Sbjct: 534 LSLLNDMTEMGIKPNVVTYNTIIDAFGKS-------KVLSEEDPEAGEMGIVGVYNGQII 586

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           +A   A  V R R    +     ++ + E+Y              F   ++  M ++GV 
Sbjct: 587 RA---ANPVTRGRSAIDV----RMRRSQELY--------------FILELFQKMVQQGVR 625

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+ V  SA+++        E A  +L++ +     V  ++Y  LMG     + W +A  L
Sbjct: 626 PNVVTFSAILNACSRCNNFEDAALLLEQLRLFDNFVYGVAYGLLMGY---QEIWSQAQSL 682

Query: 319 YEHMKSIKLKPTVSTMNALITAL 341
           +  +  +    + +  NAL   L
Sbjct: 683 FNQLGRMDSPTSSAFYNALTDVL 705



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 1/158 (0%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           +   G +     L+A I   G   + + A          G    + + S+L+ A + +  
Sbjct: 189 LVGNGSVDKGKLLTAAIGALGKMSRPDLARRAFDAGIAGGYGNTVFANSALISAYARSGL 248

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGD-QLPKTMEVLSDMKSLGLCPNTITYS 370
             +A+ + E MK   L+PT  T NA+I A   G   L  T+     M    LCP+  T++
Sbjct: 249 VNEAMGVLESMKGAGLRPTTVTYNAVIDACGKGGVDLRFTLGYFRQMLRDRLCPDRKTFN 308

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            LL AC R   +E    L  +    G+  ++  +   I
Sbjct: 309 SLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFI 346


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/420 (23%), Positives = 193/420 (45%), Gaps = 30/420 (7%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSGKVDAMF- 147
           P+L  +N ++ +  S      A ++L  +   G+  +   Y  L+   CA+  + +A+  
Sbjct: 118 PSLLAYNAVL-LALSDASLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEALGV 176

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      P+ V +N L+ A  ++G VD A  ++  M      V P  +T   ++  
Sbjct: 177 VGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREG--GVRPSLVTFNTVVNG 234

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              AG+++ AR+++  + +  +      Y   ++   + G    A +V+ +M +KGV+PD
Sbjct: 235 LCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPD 294

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 319
            V  ++LI     AG +E A  ++ + + +G+ +   ++++L+ G C N      AL   
Sbjct: 295 VVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNG-FLDDALLAM 353

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M+  +++P+V   N LI   C   ++ +  E++ +M++ G+ P+ +TYS +L    + 
Sbjct: 354 KEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKI 413

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIEN 437
            D +    L  +  + GV+P+ + +  +I G+C  RR   A  L E +L    G    E 
Sbjct: 414 GDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQL--GLQPDEF 471

Query: 438 KWTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL 485
            +T+L            AL ++ E I  G +P V   S ++  L         +RL+  L
Sbjct: 472 TYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKL 531



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 185/404 (45%), Gaps = 20/404 (4%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLL-EDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           V+  +++YN L+R    +G+  E + ++ +DM   G       Y+      C++ + +  
Sbjct: 150 VAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGE-VDA 208

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A R   ++      P+L TFN +++    +   E A ++   +   GL  D   Y TL++
Sbjct: 209 AERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVS 268

Query: 136 TCAKSGKVD---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K+G +    A+F     + V PD V F +LI A  ++G ++RA  ++ +M      +
Sbjct: 269 GYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRER--GL 326

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
             +  T  AL+      G +D A    K + +  I+ +   Y + IN   + G  + A  
Sbjct: 327 RMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARE 386

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +  +M  KG+ PD V  S ++      G  ++AFE+ ++   +G+    I+YSSL+    
Sbjct: 387 LIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLC 446

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
             +    A EL+E M  + L+P   T   LI   C    + K + +  +M   G+ P+ +
Sbjct: 447 EERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVV 506

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           TYS+L+    +    +    LL +   +  +P+ + ++ ++  C
Sbjct: 507 TYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCC 550



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 166/402 (41%), Gaps = 62/402 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L + GR+ +   + ++M R+GL      Y+      CK+   + EA   F  +     
Sbjct: 233 NGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKA-GCLHEALAVFAEMAQKGV 291

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
            P + TF  L+     + + E A  ++  ++E GL+ +   +T LI    ++G +D    
Sbjct: 292 VPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLDDALL 351

Query: 145 AMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD------------ 188
           AM E     ++P  V +N LI    + G +D A +++ EM A+    D            
Sbjct: 352 AMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYC 411

Query: 189 ---------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                                PD IT  +L++      ++  A E+++ + +  ++    
Sbjct: 412 KIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEF 471

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            YT  I+   + G+ + A S++D+M KKGV+PD V  S LID    + + + A  +L + 
Sbjct: 472 TYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKL 531

Query: 288 KNQGISVGIISYSSLMGACSNAKN---------------WQKALELYEHMKSIKLKPTVS 332
             +      I Y +LM  C  A+                  +A ++Y+ M     K   S
Sbjct: 532 YYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGS 591

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
             + LI   C G  + K +     +   G  PN+ T +I LV
Sbjct: 592 VYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNS-TSTISLV 632



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 119/288 (41%), Gaps = 32/288 (11%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFF 84
           YN LI    + GR+ E  +L+ +ME KG+      Y       CK   +  A +   +  
Sbjct: 368 YNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKML 427

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV- 143
           K    P   T++ L+      +    A ++   + + GL+ D   YTTLI    K G V 
Sbjct: 428 KKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQ 487

Query: 144 ------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                 D M +  V PD V ++ LI    +S     A  +L ++  E  PV PD+I   A
Sbjct: 488 KALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYE-DPV-PDNIKYEA 545

Query: 197 LMKACANA---------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
           LM  C  A               G +++A +VY+ +   + K    VY++ I+   + G+
Sbjct: 546 LMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGN 605

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
              A S +  + + G  P+     +L+      G    A  ++QE  N
Sbjct: 606 IMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELLN 653


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 185/417 (44%), Gaps = 24/417 (5%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN +I    ++G +++  DL ++M ++G+      Y +    +CK+ +A+ +A 
Sbjct: 218 SPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKA-RAMDKAE 276

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
            F + + N    P   T+N L+   +S+   + A +V + ++   +  D     TL+ + 
Sbjct: 277 AFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSL 336

Query: 138 AKSGKV-------DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            K GK+       D M  +   PD   +  ++      G +    D+   M  +   + P
Sbjct: 337 CKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGD--GIAP 394

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D  T   L+KA AN G +D+A  ++  +  + +K     Y   I    + G  + A   +
Sbjct: 395 DIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKF 454

Query: 250 DDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           + M  +GV+PD+     LI  F  H G +  A E++ E  N G+ + I+ + S++     
Sbjct: 455 NQMIDQGVVPDKYAYHCLIQGFCTH-GSLLKAKELISEIMNNGMRLDIVFFGSIINNLCK 513

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                 A  +++   ++ L P     N L+   C   ++ K + V   M S G+ PN + 
Sbjct: 514 LGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVG 573

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
           Y  L+    +   ++ GL L  +  + G+ P+ +++  II      +E  RT+   V
Sbjct: 574 YGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIII---DGLFEAGRTVPAKV 627



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/414 (19%), Positives = 173/414 (41%), Gaps = 52/414 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+I E  D+ + M  KG  + D   +    N   ++  + +    F L+      P
Sbjct: 336 LCKYGKIKEARDVFDTMAMKGQ-NPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAP 394

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            + TFN+L+   A+    + A  +   +++ G+K     Y T+I    + GK+D   E  
Sbjct: 395 DIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKF 454

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEM---------------------- 180
                  V PD+  ++ LI      G++ +A ++++E+                      
Sbjct: 455 NQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKL 514

Query: 181 --------------NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
                         N  +HP   D +    LM      G++++A  V+  +    I+   
Sbjct: 515 GRVMDAQNIFDLTVNVGLHP---DAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNV 571

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             Y   +N   + G  +   S++ +M +KG+ P  +  + +ID    AG+   A     E
Sbjct: 572 VGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHE 631

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               GI++   +YS ++      + + +A+ L++ ++++ +K  + T+N +I  +    +
Sbjct: 632 MTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRR 691

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           + +  ++ + +   GL P  +TYSI++    ++  VE    + S  +  G  P+
Sbjct: 692 VEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPD 745



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 180/440 (40%), Gaps = 64/440 (14%)

Query: 36  IRQG--RISECIDLLEDMERKG--LLDMD------KVYHARFFNVCKSQKAIKEAFRFFK 85
           +R+G  R  E  DLL++++R+G  +LD D       +  A     C S  A+  A  F +
Sbjct: 40  VREGTLRPEEAHDLLDELQRRGTPVLDRDLNGFLAALARAPSSAACGSGPALAVAL-FNR 98

Query: 86  L--------VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                    V +PT  T+ +LM  C  +   E A      +   GL+ D  + + L+   
Sbjct: 99  AASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGF 158

Query: 138 AKSGKVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
            ++ + D   +            PD   +N L+ +    G   +A D+L  M        
Sbjct: 159 CEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCS 218

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD +    ++      G V++A +++K + +  I      Y+  ++   +    + A + 
Sbjct: 219 PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAF 278

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
              M  KGV+PD    + LI      G+ + A  + +E + Q I   +++ ++LMG+   
Sbjct: 279 LRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCK 338

Query: 309 AKNWQKALELYEHMK-----------SIKLK------------------------PTVST 333
               ++A ++++ M            +I L                         P + T
Sbjct: 339 YGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYT 398

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            N LI A  +   L K M + ++M+  G+ P+ +TY  ++ A  R   ++  +   +Q  
Sbjct: 399 FNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMI 458

Query: 394 EDGVIPNLVMFKCII-GMCS 412
           + GV+P+   + C+I G C+
Sbjct: 459 DQGVVPDKYAYHCLIQGFCT 478


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/391 (23%), Positives = 166/391 (42%), Gaps = 14/391 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RFFKLVPNPTLS 93
           +  R    I L E M+  G+  +    +     VC+S +  + +    +  KL   P L 
Sbjct: 94  KMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLV 153

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           TF  L+         E A  +   +   G + +   YTTLI    K+  ++   E     
Sbjct: 154 TFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQM 213

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               ++P+ V +N+L++   + G    A  +L +M      + P+ IT  AL+ A    G
Sbjct: 214 GDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKR--GIQPNVITFTALIDAFVKVG 271

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++  A+E+YK++ + ++      YT  IN     G  + A  ++  M   G  P+EV  +
Sbjct: 272 KIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYT 331

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LI     + +VE   +I  E   +G+    I+Y+ L+           A E++  M S 
Sbjct: 332 TLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSR 391

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           +  P + T N L+  LC    + K + +   M+   +  N +TY+I++    +   VE  
Sbjct: 392 RAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDA 451

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCSRRY 415
             L       G+ PN++ +  +I G C R +
Sbjct: 452 FDLFCSLFSKGMKPNVITYTTMISGFCRRGF 482



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 151/323 (46%), Gaps = 18/323 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P + T+  L+     ++    A ++   + + G++ +   Y +L++   + G+       
Sbjct: 185 PNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWL 244

Query: 144 --DAMFENVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALM 198
             D M   ++P+ + F ALI A  + G +  A   + V+ +M+     V PD  T  AL+
Sbjct: 245 LRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMS-----VYPDVFTYTALI 299

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                 G++D AR+++ ++           YT  I+   ++   E    ++ +M++KG++
Sbjct: 300 NGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLV 359

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALE 317
            + +  + LI      G+ + A E+  +  ++     I +Y+ L+ G C N    +KAL 
Sbjct: 360 ANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGY-VEKALM 418

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           ++++M+  ++   + T   +I  +C   ++    ++   + S G+ PN ITY+ ++    
Sbjct: 419 IFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFC 478

Query: 378 RKDDVEVGLMLLSQAKEDGVIPN 400
           R+  +     L  + KEDG +PN
Sbjct: 479 RRGFIHEADALFKKMKEDGFLPN 501



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 132/291 (45%), Gaps = 11/291 (3%)

Query: 130 YTTLITTCAKSGKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           +T L++  AK  + D   ++FE      + P     N ++    +S    RA   L +M 
Sbjct: 85  FTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMM 144

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
                 +PD +T  +L+    +  +++ A  ++  I     +     YT  I+C  +   
Sbjct: 145 KL--GFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRH 202

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
              A  +++ M   G+ P+ V  ++L+      G+   A  +L++   +GI   +I++++
Sbjct: 203 LNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTA 262

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+ A        +A ELY+ M  + + P V T  ALI  LC   +L +  ++   M+S G
Sbjct: 263 LIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNG 322

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             PN +TY+ L+    +   VE G  +  +  + G++ N + +  +I G C
Sbjct: 323 YYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYC 373



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/399 (21%), Positives = 172/399 (43%), Gaps = 22/399 (5%)

Query: 31  SYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +Y +++R G    + +E +DL   M     L    V   R  +V    K        F+ 
Sbjct: 49  NYRKILRNGLHNLQFNEALDLFTRMVHSRPLP-SIVDFTRLLSVIAKMKRFDVVISLFEQ 107

Query: 86  ---LVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              L  +P L T N++M+ VC SS+    +  + ++++  G + D   +T+L+       
Sbjct: 108 MQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMK-LGFEPDLVTFTSLLHGFCHWN 166

Query: 142 KVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +++   A+F+ +     +P+ V +  LI    ++  ++ A ++  +M    + + P+ +T
Sbjct: 167 RIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGD--NGIRPNVVT 224

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +L+      G+   A  + + + K  I+     +T  I+   + G    A  +Y  M 
Sbjct: 225 YNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMI 284

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +  V PD    +ALI+     G+++ A ++    ++ G     ++Y++L+     +K  +
Sbjct: 285 QMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVE 344

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
              +++  M    L     T   LI   C   +     EV + M S    P+  TY++LL
Sbjct: 345 DGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLL 404

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
                   VE  LM+    ++  +  N+V +  II GMC
Sbjct: 405 DGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMC 443



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 125/276 (45%), Gaps = 10/276 (3%)

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
           + A D+   M     P+ P  +    L+   A   + D    +++ +    I  +P +YT
Sbjct: 64  NEALDLFTRM-VHSRPL-PSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGI--SPVLYT 119

Query: 231 --IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
             I +NC  ++     A      M K G  PD V  ++L+    H  ++E A  +  +  
Sbjct: 120 CNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIV 179

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
             G    +++Y++L+      ++   A+E++  M    ++P V T N+L++ LC+  +  
Sbjct: 180 GMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWS 239

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
               +L DM   G+ PN IT++ L+ A  +   +     L     +  V P++  +  +I
Sbjct: 240 DAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALI 299

Query: 409 -GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            G+C+  R ++AR +  +++  N   P  E  +T+L
Sbjct: 300 NGLCTYGRLDEARQM-FYLMESNGYYPN-EVTYTTL 333



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/337 (20%), Positives = 129/337 (38%), Gaps = 55/337 (16%)

Query: 17  KHANYAHDVSEQLH---------SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVY 63
           +H N+A ++  Q+          +YN L+      GR S+   LL DM ++G+       
Sbjct: 201 RHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGI------- 253

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
                                     P + TF  L+           A ++ +++ +  +
Sbjct: 254 -------------------------QPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSV 288

Query: 124 KADCKLYTTLITTCAKSGKVD---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFD 175
             D   YT LI      G++D    MF         P+ V +  LI    +S  V+    
Sbjct: 289 YPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTK 348

Query: 176 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
           +  EM+ +   +  + IT   L++     G+ D A+EV+  +           Y + ++ 
Sbjct: 349 IFYEMSQK--GLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDG 406

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
               G  E A  ++  M K+ +  + V  + +I      GKVE AF++     ++G+   
Sbjct: 407 LCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPN 466

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
           +I+Y++++          +A  L++ MK     P  S
Sbjct: 467 VITYTTMISGFCRRGFIHEADALFKKMKEDGFLPNES 503


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 158/345 (45%), Gaps = 13/345 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           PT +T+N L+S  A     + A  V+  +   G + D   Y  L     ++GKVD  F+ 
Sbjct: 278 PTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKL 337

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    V PD V +N L+ AC +      A ++L EM  +   V    +T   ++K 
Sbjct: 338 KDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDK--GVKSSLVTHNIVVKG 395

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               GQ++ A    KM+ +  +      Y   I+   +  +   A  + D+M + G+  D
Sbjct: 396 LCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMD 455

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
              L+ L+       + E A E+L+    +G     +SY ++M A       + AL L++
Sbjct: 456 TFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWD 515

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M   KL P++ T N LI  LC   +L + ++ L+++   GL P+  TY+I++ A  ++ 
Sbjct: 516 EMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEG 575

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNE 423
           D+E      ++  E+   P++V    ++ G+C   + EKA  L E
Sbjct: 576 DLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFE 620



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 177/402 (44%), Gaps = 29/402 (7%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
           H  ++ LHS+ R   +G +           R  L   + V  A   +   S +A  + FR
Sbjct: 154 HLAAQLLHSFRR---RGHV-----------RPSLQAANAVLSALARSPSTSPQASLDVFR 199

Query: 83  -FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKS 140
               L  +P   TFN+L+    S      A   L  +Q  GL  D   Y TL+   C K 
Sbjct: 200 SLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKG 259

Query: 141 --GKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
             G+   +      E + P R  +N L++A  + G + +A +V+  M A     +PD  T
Sbjct: 260 MLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTA--FGFEPDLWT 317

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDD 251
              L      AG+VD A ++   +   +I  +P+V  Y   ++ C +      A ++ ++
Sbjct: 318 YNVLAAGLCQAGKVDEAFKLKDEMEHLSIV-SPDVVTYNTLVDACFKYQRSSDALNLLEE 376

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M  KGV    V  + ++      G++E A   L+    +G++  +I+Y++L+ A   A+N
Sbjct: 377 MRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARN 436

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             KA  L + M    LK    T+N L+  LC   +  +  E+L      G  P+ ++Y  
Sbjct: 437 VAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGT 496

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
           ++ A  +++  E  L L  +  +  + P++  +  +I G+C+
Sbjct: 497 VMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCT 538



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 94/419 (22%), Positives = 176/419 (42%), Gaps = 57/419 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF--- 83
           +YN L+    R G I +  +++E M   G       Y+     +C++ K + EAF+    
Sbjct: 282 TYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGK-VDEAFKLKDE 340

Query: 84  --FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
                + +P + T+N L+  C   + S  A  +L  +++ G+K+    +  ++    + G
Sbjct: 341 MEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREG 400

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----- 188
           +++           E + PD + +N LI A  ++  V +AF ++ EM      +D     
Sbjct: 401 QLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLN 460

Query: 189 ----------------------------PDHITIGALMKACANAGQVDRAREVYKMIHKY 220
                                       PD ++ G +M A     + + A  ++  + K 
Sbjct: 461 TLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKR 520

Query: 221 NIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278
            +  TP +YT    I      G    A    +++ KKG++PD+   + +I      G +E
Sbjct: 521 KL--TPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLE 578

Query: 279 AAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
            AF+   +         +++ ++LM G C + K  +KA++L+E       K  V T N L
Sbjct: 579 KAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGK-LEKAIKLFESWAEKGKKVDVITYNTL 637

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           I ALC    +   +   +DM++ GL P+  TY+++L A       E    +L +  E G
Sbjct: 638 IQALCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESG 696



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 56/109 (51%)

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
           A S + + Q +L+++  + +++L P   T N L+   C    L   +  LS M+  GL P
Sbjct: 184 ARSPSTSPQASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSP 243

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           + +TY+ LL A  RK  +     LL++ K++G+ P    +  ++   +R
Sbjct: 244 DVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYAR 292


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 161/369 (43%), Gaps = 17/369 (4%)

Query: 71  CKSQK---AIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKAD 126
           C+ +K   A     +  KL   P   TF+ L++ +C   + SE    V R+V E G K D
Sbjct: 232 CRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV-EMGHKPD 290

Query: 127 CKLYTTLITTCAKSGK-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLA 178
                TL+     SGK       +D M E   +P+ V +  ++    +SG    A ++L 
Sbjct: 291 LITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLR 350

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
           +M  E   +  D +    ++      G +D A  ++  +    I      Y I I     
Sbjct: 351 KM--EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCN 408

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G W+    +  DM K+ + P+ V  S LID     GK+  A E+ +E  ++GI+   I+
Sbjct: 409 AGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTIT 468

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y+SL+       +  KA ++ + M S    P + T N LI   C  +++   +E+   M 
Sbjct: 469 YTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMS 528

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYE 416
             G+  +T+TY+ L+        + V   L  +     V PN+V +K ++ G+C     E
Sbjct: 529 LRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESE 588

Query: 417 KARTLNEHV 425
           KA  + E +
Sbjct: 589 KALEIFEKI 597



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 148/333 (44%), Gaps = 11/333 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
           P PT+  F+ L S  A +K  +    + + ++  G+  +    + +I    +  K+    
Sbjct: 182 PLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAF 241

Query: 144 DAMFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            AM + +K    P+ + F+ LI      G V  A +++  M    H   PD ITI  L+ 
Sbjct: 242 SAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK--PDLITINTLVN 299

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               +G+   A  +   + +Y  +     Y   +N   ++G    A  +   M ++ +  
Sbjct: 300 GLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL 359

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  S +ID     G ++ AF +  E + +GI+  II+Y+ L+G   NA  W    +L 
Sbjct: 360 DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLL 419

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M   K+ P V T + LI +     +L +  E+  +M   G+ P+TITY+ L+    ++
Sbjct: 420 RDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKE 479

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + ++    ++      G  PN+  F  +I G C
Sbjct: 480 NHLDKANQMVDLMVSKGCDPNIRTFNILINGYC 512



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 91/428 (21%), Positives = 183/428 (42%), Gaps = 60/428 (14%)

Query: 33  NRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           N L  +GR+SE ++L++ M   G    L+ ++ + +     +C S K  +      K+V 
Sbjct: 264 NGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNG----LCLSGKEAEAMLLIDKMVE 319

Query: 89  ---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P   T+  +++V   S  +  A ++LR ++E  +K D   Y+ +I    K G +D 
Sbjct: 320 YGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDN 379

Query: 146 MF-------------------------------------------ENVKPDRVVFNALIT 162
            F                                             + P+ V F+ LI 
Sbjct: 380 AFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLID 439

Query: 163 ACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
           +  + G +  A ++  EM   +H  + PD IT  +L+        +D+A ++  ++    
Sbjct: 440 SFVKEGKLREAEELHKEM---IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 496

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
                  + I IN   +    +    ++  M+ +GV+ D V  + LI      GK+  A 
Sbjct: 497 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 556

Query: 282 EILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
           E+ QE  ++ +   I++Y  L+ G C N ++ +KALE++E ++  K++  +   N +I  
Sbjct: 557 ELFQEMVSRKVPPNIVTYKILLDGLCDNGES-EKALEIFEKIEKSKMELDIGIYNIIIHG 615

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           +C+  ++    ++   +   G+ P   TY+I++    +K  +    +L  + +EDG  P+
Sbjct: 616 MCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 675

Query: 401 LVMFKCII 408
              +  +I
Sbjct: 676 GWTYNILI 683



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 170/393 (43%), Gaps = 17/393 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N + + G+ +  ++LL  ME + +  +D V ++   +      ++  AF  F  +     
Sbjct: 334 NVMCKSGQTALAMELLRKMEERNI-KLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGI 392

Query: 89  NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
              + T+N+L+   C + +  +GA ++LR + +  +  +   ++ LI +  K GK+    
Sbjct: 393 TTNIITYNILIGGFCNAGRWDDGA-KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 451

Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
               + +   + PD + + +LI    +   +D+A  ++  M ++    DP+  T   L+ 
Sbjct: 452 ELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK--GCDPNIRTFNILIN 509

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               A ++D   E+++ +    +      Y   I    + G    A  ++ +M  + V P
Sbjct: 510 GYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPP 569

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V    L+D     G+ E A EI ++ +   + + I  Y+ ++    NA     A +L+
Sbjct: 570 NIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 629

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             +    +KP V T N +I  LC    L +   +   M+  G  P+  TY+IL+ A    
Sbjct: 630 CSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGD 689

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
            D    + L+ + K  G   +    K +I M S
Sbjct: 690 GDATKSVKLIEELKRCGFSVDASTIKMVIDMLS 722



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 73/339 (21%), Positives = 144/339 (42%), Gaps = 27/339 (7%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  + +YN LI      GR  +   LL DM ++ + + + V  +   +    +  ++EA
Sbjct: 392 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKI-NPNVVTFSVLIDSFVKEGKLREA 450

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
               K + +    P   T+  L+         + A Q++ L+   G   + + +  LI  
Sbjct: 451 EELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILING 510

Query: 137 CAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K+ ++D   E         V  D V +N LI    + G ++ A ++  EM +   P  
Sbjct: 511 YCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP-- 568

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGD--WEF 244
           P+ +T   L+    + G+ ++A E+++ I K  ++    +Y I I+  C +   D  W+ 
Sbjct: 569 PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDL 628

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
            CS    +  KGV P     + +I      G +  A  + ++ +  G +    +Y+ L+ 
Sbjct: 629 FCS----LPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIR 684

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           A     +  K+++L E +K        ST+  +I  L D
Sbjct: 685 AHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSD 723



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/291 (20%), Positives = 128/291 (43%), Gaps = 17/291 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           +  +++G++ E  +L ++M  +G+      Y +     CK +  + +A +   L+     
Sbjct: 439 DSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCK-ENHLDKANQMVDLMVSKGC 497

Query: 89  NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           +P + TFN+L++  C +++  +G  ++ R +   G+ AD   Y TLI    + GK++   
Sbjct: 498 DPNIRTFNILINGYCKANRIDDG-LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 556

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           E         V P+ V +  L+     +G  ++A ++  ++      +D     I  ++ 
Sbjct: 557 ELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNI--IIH 614

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              NA +VD A +++  +    +K   + Y I I    + G    A  ++  M + G  P
Sbjct: 615 GMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAP 674

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           D    + LI      G    + ++++E K  G SV   +   ++   S+ K
Sbjct: 675 DGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDDK 725



 Score = 45.8 bits (107), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 12/170 (7%)

Query: 249 YDDMTKKGVIPD------EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           Y+D   + V  D      E   S L+D      K + A ++ ++  +      +I +S L
Sbjct: 138 YEDFIARMVANDRNLSYRERLRSGLVDI-----KADDAIDLFRDMIHSRPLPTVIDFSRL 192

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
             A +  K +   L L + M+   +   + T++ +I   C   +L      +  +  LG 
Sbjct: 193 FSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGY 252

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            PNTIT+S L+     +  V   L L+ +  E G  P+L+    ++ G+C
Sbjct: 253 EPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLC 302


>gi|240255936|ref|NP_193372.6| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|374095491|sp|Q8GWE0.3|PP314_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16390, chloroplastic; AltName: Full=Chloroplastic
           RNA-binding protein P67; Flags: Precursor
 gi|332658341|gb|AEE83741.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 702

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 177/388 (45%), Gaps = 34/388 (8%)

Query: 139 KSGKV-DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           KS K+ D M E  +KPD   F  +I+   Q+G   RA +   +M++     +PD++T+ A
Sbjct: 193 KSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSS--FGCEPDNVTMAA 250

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ A   AG VD A  +Y        +     ++  I     +G+++   ++Y++M   G
Sbjct: 251 MIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALG 310

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V P+ V  + LID  G A +   A  I ++    G +    +Y++L+ A   A+    AL
Sbjct: 311 VKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDAL 370

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLV- 374
            +Y  MK   L  TV   N L++   D   + +  E+  DMK+   C P++ T+S L+  
Sbjct: 371 AIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITV 430

Query: 375 -ACE-RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
            AC  R  + E  L+   Q +E G  P L +   +I  C   Y KA+ +++ V +F+   
Sbjct: 431 YACSGRVSEAEAALL---QMREAGFEPTLFVLTSVI-QC---YGKAKQVDDVVRTFD--- 480

Query: 433 PQIENKWTSLALMVYREAIVAGTIPTV------EVVSKVLGCLQ--LPYNADIRERLVEN 484
            Q+      L L +  +    G +  V      E + K++GC++   P    + + LVE 
Sbjct: 481 -QV------LELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEE 533

Query: 485 LGVSADALKRSNLCSLIDGFGEYDPRAF 512
                   K+     LID  G    +A+
Sbjct: 534 QNCEEGVFKK-EASELIDSIGSDVKKAY 560



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 152/335 (45%), Gaps = 11/335 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVD 144
           P+  +  +N+ M V   SKD E + ++   + E G+K D   +TT+I+   ++G   +  
Sbjct: 171 PSREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAV 230

Query: 145 AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             FE +     +PD V   A+I A G++G VD A  +      E   +D   +T   L++
Sbjct: 231 EWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDA--VTFSTLIR 288

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               +G  D    +Y+ +    +K    +Y   I+   +      A  +Y D+   G  P
Sbjct: 289 IYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTP 348

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    +AL+   G A   + A  I +E K +G+S+ +I Y++L+  C++ +   +A E++
Sbjct: 349 NWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIF 408

Query: 320 EHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           + MK+ +   P   T ++LIT      ++ +    L  M+  G  P     + ++    +
Sbjct: 409 QDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGK 468

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
              V+  +    Q  E G+ P+     C++ + ++
Sbjct: 469 AKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQ 503



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 146/321 (45%), Gaps = 28/321 (8%)

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           I     MK    +  ++++ +++  + +  IK     +T  I+C  Q G  + A   ++ 
Sbjct: 176 ILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEK 235

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M+  G  PD V ++A+ID  G AG V+ A  +   A+ +   +  +++S+L+     + N
Sbjct: 236 MSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGN 295

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           +   L +YE MK++ +KP +   N LI ++    +  +   +  D+ + G  PN  TY+ 
Sbjct: 296 YDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAA 355

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFN 429
           L+ A  R    +  L +  + KE G+   ++++  ++ MC+  R  ++A  + + + +  
Sbjct: 356 LVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCE 415

Query: 430 SGRPQIENKWT-----------------SLALMVYREAIVAGTIPTVEVVSKVLGCLQLP 472
           +  P   + WT                   AL+  RE   AG  PT+ V++ V+ C    
Sbjct: 416 TCDP---DSWTFSSLITVYACSGRVSEAEAALLQMRE---AGFEPTLFVLTSVIQCYGKA 469

Query: 473 YNADIRERLVEN---LGVSAD 490
              D   R  +    LG++ D
Sbjct: 470 KQVDDVVRTFDQVLELGITPD 490



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 144/371 (38%), Gaps = 69/371 (18%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +++ LIR     G    C+++ E+M+  G+     +Y+    ++ ++++  +    +  L
Sbjct: 282 TFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDL 341

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + N   P  ST+  L+     ++  + A  + R ++E GL     LY TL++ CA +  V
Sbjct: 342 ITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYV 401

Query: 144 DAMF---------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           D  F         E   PD   F++LIT    SG V  A   L +M       +P    +
Sbjct: 402 DEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREA--GFEPTLFVL 459

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE----FACS--- 247
            ++++    A QVD     +  + +  I          +N  +QT   E      C    
Sbjct: 460 TSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKA 519

Query: 248 -----------VYDDMTKKGVIPDE--------------VFLSALIDFAGHAGKVEAAFE 282
                      V +   ++GV   E               +L+ LID   +  K+E A E
Sbjct: 520 KPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLIDLCVNLNKLERACE 579

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT--- 339
           ILQ      I  G+ S S        A  W        H+KS+ L   ++ ++  +    
Sbjct: 580 ILQLGLEYDIYTGLQSKS--------ATQWSL------HLKSLSLGAALTALHVWMNDLS 625

Query: 340 --ALCDGDQLP 348
             AL  G++ P
Sbjct: 626 EAALESGEEFP 636


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 165/367 (44%), Gaps = 21/367 (5%)

Query: 71  CKSQKAIKE-AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           C +Q+  K+ AF+ F+ + N    P   T+  +++ C S  + E   ++   + +AG + 
Sbjct: 102 CYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQR 161

Query: 126 DCKLYTTLITTCAKSG---KVDAMFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMN 181
           D ++  +L++   K G   +   +F  + P D V +N ++    Q   V     +  +M+
Sbjct: 162 DPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMS 221

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
           +E   + PD +T   L+ A      +D  + ++K+  +  +     V T  +  C + GD
Sbjct: 222 SE--GISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGD 279

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            + A   +  +  + V+     ++AL   A H   VEA FE     ++ G+++   +Y S
Sbjct: 280 VDSAKQAFKGIADRDVVVYNALIAAL---AQHGHNVEA-FEQYYRMRSDGVALNRTTYLS 335

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           ++ ACS +K  +    ++ H+        V   NALI+       LPK  E+   M    
Sbjct: 336 ILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRD 395

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKAR 419
           L    I+++ ++    R++D    + L  Q + +GV P  V F  ++  C  S  Y   +
Sbjct: 396 L----ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGK 451

Query: 420 TLNEHVL 426
            ++E +L
Sbjct: 452 MIHEDIL 458



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 185/413 (44%), Gaps = 53/413 (12%)

Query: 54  KGLLDMDKVYHARFFNVCKSQKAIKEAF-RFFKLVPNPTL---STFNMLMSVCASSKDSE 109
           KG+ D D V +              EAF +++++  +      +T+  +++ C++SK  E
Sbjct: 288 KGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALE 347

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMFENV-KPDRVVFNALITACG 165
               +   + E G  +D ++   LI+  A+ G   K   +F  + K D + +NA+I    
Sbjct: 348 AGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYA 407

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
           +      A  +  +M +E   V P  +T   L+ ACAN+      + +++ I +  IK  
Sbjct: 408 RREDRGEAMRLYKQMQSE--GVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSN 465

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEI 283
             +    +N   + G    A +V++    + VI      +++I  AGHA  G  E A+++
Sbjct: 466 GHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS----WNSMI--AGHAQHGSYETAYKL 519

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI----- 338
            QE +N+ +    I+++S++  C N +  +   +++  +    L+  V+  NALI     
Sbjct: 520 FQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIR 579

Query: 339 ----------------------TALCDG--DQLP--KTMEVLSDMKSLGL-CPNTITYSI 371
                                 TA+  G  DQ    K +E+   M++ G   P+  T++ 
Sbjct: 580 CGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTS 639

Query: 372 LLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGMC--SRRYEKARTL 421
           +L AC     V  G  + S  + E GV+P +  + C++G+   +RR+++A TL
Sbjct: 640 ILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETL 692



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/430 (20%), Positives = 185/430 (43%), Gaps = 55/430 (12%)

Query: 55  GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST-----FNMLMSVCASSKDSE 109
           G+   D V +     +   +  +KE    F  + +  +S       N+L +    S   E
Sbjct: 188 GISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDE 247

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP----DRVVFNALITACG 165
           G  ++ +L  E GL +D ++ T L+T C + G VD+  +  K     D VV+NALI A  
Sbjct: 248 GK-RIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALA 306

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
           Q G    AF+    M ++   V  +  T  +++ AC+ +  ++  + ++  I +      
Sbjct: 307 QHGHNVEAFEQYYRMRSD--GVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSD 364

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE--AAFEI 283
            ++    I+  ++ GD   A  ++  M K+    D +  +A+I  AG+A + +   A  +
Sbjct: 365 VQIGNALISMYARCGDLPKARELFYTMPKR----DLISWNAII--AGYARREDRGEAMRL 418

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT------------- 330
            ++ +++G+  G +++  L+ AC+N+  +     ++E +    +K               
Sbjct: 419 YKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRR 478

Query: 331 ------------------VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
                             V + N++I             ++  +M++  L P+ IT++ +
Sbjct: 479 CGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASV 538

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
           L  C+  + +E+G  +  +  E G+  ++ +   +I M    Y +  +L +    F+S +
Sbjct: 539 LSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINM----YIRCGSLQDARNVFHSLQ 594

Query: 433 PQIENKWTSL 442
            +    WT++
Sbjct: 595 HRDVMSWTAM 604



 Score = 46.2 bits (108), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 55/279 (19%), Positives = 99/279 (35%), Gaps = 62/279 (22%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           S+N +I    + G       L ++M+ + L + D +  A   + CK+ +A++   +    
Sbjct: 499 SWNSMIAGHAQHGSYETAYKLFQEMQNEEL-EPDNITFASVLSGCKNPEALELGKQIHGR 557

Query: 87  VPNPTL--------STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           +    L        +  NM +  C S +D+   F  L+         D   +T +I  CA
Sbjct: 558 ITESGLQLDVNLGNALINMYIR-CGSLQDARNVFHSLQ-------HRDVMSWTAMIGGCA 609

Query: 139 KSG---KVDAMFENVK------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEV----- 184
             G   K   +F  ++      PD   F ++++AC  +G V   + + + M +E      
Sbjct: 610 DQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPT 669

Query: 185 --------------------------HPVDPDHITIGALMKACANAGQVDRAREVYKMIH 218
                                      P  PD      L+ AC   G +  A        
Sbjct: 670 IEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNAL 729

Query: 219 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           K N +  P VY +  N  +  G W+    +   M  +G+
Sbjct: 730 KLNAR-NPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGI 767


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 176/380 (46%), Gaps = 52/380 (13%)

Query: 71  CKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKAD 126
           CK+ + +K+A   F+ +     P   T+N++++    ++ +  A++VL+ +++   +  D
Sbjct: 18  CKANQ-LKQALACFEKMREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPD 76

Query: 127 CKLYTTLITTCAKSGKVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVL 177
              Y+T+I    K G++D   E          + PD V + +++    + G +DRA +++
Sbjct: 77  LVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMV 136

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            EM  ++  V+PD  T  AL+    NA +VD A ++YK           E+ T       
Sbjct: 137 REM--KLKGVEPDKFTFSALITGWCNARKVDEALKLYK-----------EILT------- 176

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
            +  W+               PD V  +ALID    +G +E A ++L   + +     ++
Sbjct: 177 -SSSWK---------------PDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVV 220

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +YSSL+     A +  +AL+L+  M S    P V T   LI  LC   ++     ++ +M
Sbjct: 221 TYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEM 280

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRY 415
            +    P+T++Y+ LL    R   +E    L  +      +P+ + + C++ G C + R 
Sbjct: 281 TATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRL 340

Query: 416 EKARTLNEHVLSFNSGRPQI 435
           E+AR L E++ +     P +
Sbjct: 341 EEARFLLENMKTAAGIDPDV 360



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/429 (22%), Positives = 191/429 (44%), Gaps = 26/429 (6%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           A DV       + L R G++    +++ +M+ KG+      + A     C ++K + EA 
Sbjct: 110 APDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARK-VDEAL 168

Query: 82  RFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           + +K +       P + T+  L+     S + E A ++L +++      +   Y++L+  
Sbjct: 169 KLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHG 228

Query: 137 CAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K+G +D   +  +        P+ V +  LI     +  VD A  ++ EM A   P  
Sbjct: 229 LCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCP-- 286

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD ++  AL+      G+++ A++++K +   +       YT  +         E A  +
Sbjct: 287 PDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFL 346

Query: 249 YDDM-TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
            ++M T  G+ PD V  S ++     A +   A E +QE   + ++   ++YSSL+    
Sbjct: 347 LENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLC 406

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            A     A+E+ ++M + +++P+V T N++I ALC    + +  ++L  M + GL P  +
Sbjct: 407 KAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMV 466

Query: 368 TYSILLVACERKDDVEVGLMLLSQAK--------EDGVIPNLVMFKCIIGMC-SRRYEKA 418
           TY+ LL    R   +E+   L    +           ++P       I G+C +R  +KA
Sbjct: 467 TYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKA 526

Query: 419 RTLNEHVLS 427
             + E + S
Sbjct: 527 MAVVEELRS 535



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/285 (22%), Positives = 128/285 (44%), Gaps = 25/285 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN L+    R GRI E   L ++M  K  L     Y       C + +  +  F    +
Sbjct: 291 SYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENM 350

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                 +P + T++++++  + +K    A + ++ +    +  +   Y++LI    K+G+
Sbjct: 351 KTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGR 410

Query: 143 VDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           VD   E         V+P    FN++I A  + G +D A+ +L  M A  H ++P  +T 
Sbjct: 411 VDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAA--HGLEPGMVTY 468

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKG------TPE-VYTIAINCCSQTGDWEFACS 247
             L++  +  G+++ A E+++++ K   K        PE  ++  I    +  + + A +
Sbjct: 469 TTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMA 528

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           V +++  +   P E    A++D    AG+ E A +++      G+
Sbjct: 529 VVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 178/410 (43%), Gaps = 39/410 (9%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAI 77
           + H  S       RL R+  +     +L+ M+  G+   + ++      +  V  +++A+
Sbjct: 70  FQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQAL 129

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           K  +R  +    PT+  +N L+        SE  FQ++             LYT +    
Sbjct: 130 KMFYRIGEFGCKPTVRIYNHLLDALL----SENKFQMIN-----------PLYTNM---- 170

Query: 138 AKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
               K D +  NV      +N L+ A  ++  VD A  +  EM+ +  P  PD +T   +
Sbjct: 171 ----KKDGLIPNV----FTYNILLKALCKNDRVDAAHKLFVEMSNKGCP--PDAVTYTTM 220

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           + +   AG++D ARE+         K +  VY   I+   + G  E A  +  +M   GV
Sbjct: 221 VSSLCKAGKIDDARELAG-----RFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV 275

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P+ V  S +I+    +G VE AF +  +   +G    I +++ L+  C       +AL+
Sbjct: 276 DPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALD 335

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L++ M     +P V   N LI  LC    L + ++V   M+  G  PN  TYSIL+    
Sbjct: 336 LWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFA 395

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHV 425
           +  D+       ++    G  PN+V + C++ +  +   +++A +L E +
Sbjct: 396 KSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKM 445



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 170/403 (42%), Gaps = 34/403 (8%)

Query: 30  HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----- 84
           H  + L+ + +      L  +M++ GL+     Y+     +CK+ + +  A + F     
Sbjct: 149 HLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDR-VDAAHKLFVEMSN 207

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKV 143
           K  P   ++   M+ S+C + K  +         + AG  K    +Y  LI    K G++
Sbjct: 208 KGCPPDAVTYTTMVSSLCKAGKIDDAR-------ELAGRFKPSVPVYNALIDGMCKEGRI 260

Query: 144 DA-------MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEM-----NAEVHPVDPD 190
           +        M +N V P+ V ++ +I +   SG V+ AF + A+M     +A +H   P 
Sbjct: 261 EVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTP- 319

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
                 L+K C   G++  A +++K++ +   +     Y   I+     G  E A  V D
Sbjct: 320 ------LIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCD 373

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            M + G +P+    S LID    +G +  A E      + G    +++Y+ ++       
Sbjct: 374 QMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNS 433

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            + +A  L E M      P   T N  I  LC   ++   M++L  M+  G  PN  TY+
Sbjct: 434 MFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYN 493

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            LL A  R +  E    L  + +   + PNLV +  ++   SR
Sbjct: 494 ELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSR 536



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 166/399 (41%), Gaps = 30/399 (7%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    ++GRI   I LL +M   G+ D + V ++   N       ++ AF  F  +
Sbjct: 247 YNALIDGMCKEGRIEVAIKLLGEMMDNGV-DPNVVSYSCIINSLCVSGNVELAFALFAQM 305

Query: 88  ----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                +  + TF  L+  C        A  + +L+ + G + +   Y TLI     +G +
Sbjct: 306 FLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSL 365

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +   +           P+   ++ LI    +SG +  A +    M +  H   P+ +T  
Sbjct: 366 EEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMIS--HGCRPNVVTYT 423

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIA--INCCSQTGDWEFACSVYDDM 252
            ++         D+A     ++ K  ++G TP   T    I      G  E+A  + + M
Sbjct: 424 CMVDVLCKNSMFDQANS---LVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERM 480

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
              G +P+    + L+D      K E AF + QE + + +   +++Y++++   S A   
Sbjct: 481 QGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMM 540

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCPNTITY 369
            +AL+L+         P   T N +I A C   ++    + +E +S MK     P+ ITY
Sbjct: 541 GEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWH--PDIITY 598

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + L+       ++E  +  L +A   G+ PN   +  ++
Sbjct: 599 TSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 146/347 (42%), Gaps = 20/347 (5%)

Query: 28  QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +H++  LI+    +G++ E +DL + M + G       Y+     +C S  +++EA + 
Sbjct: 313 NIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLC-SNGSLEEALQV 371

Query: 84  FKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
              +      P ++T+++L+   A S D  GA +    +   G + +   YT ++    K
Sbjct: 372 CDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCK 431

Query: 140 SGKVDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           +   D           E   P+ + FN  I     +G V+ A  +L  M    H   P+ 
Sbjct: 432 NSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQG--HGCLPNI 489

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
            T   L+ A     + + A  +++ I   N++     Y   +   S+ G    A  ++  
Sbjct: 490 TTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGK 549

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN-QGISVGIISYSSLMGACSNAK 310
              +G  PD +  + +I      GKV+ A ++++   + +     II+Y+SL+    N  
Sbjct: 550 ALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWM 609

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           N ++A+   +   +  + P  +T NAL+    D       + +L D+
Sbjct: 610 NIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDI 656


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 178/410 (43%), Gaps = 39/410 (9%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAI 77
           + H  S       RL R+  +     +L+ M+  G+   + ++      +  V  +++A+
Sbjct: 70  FQHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQAL 129

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           K  +R  +    PT+  +N L+        SE  FQ++             LYT +    
Sbjct: 130 KMFYRIGEFGCKPTVRIYNHLLDALL----SENKFQMIN-----------PLYTNM---- 170

Query: 138 AKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
               K D +  NV      +N L+ A  ++  VD A  +  EM+ +  P  PD +T   +
Sbjct: 171 ----KKDGLIPNV----FTYNILLKALCKNDRVDAAHKLFVEMSNKGCP--PDAVTYTTM 220

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           + +   AG++D ARE+         K +  VY   I+   + G  E A  +  +M   GV
Sbjct: 221 VSSLCKAGKIDDARELAG-----RFKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGV 275

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P+ V  S +I+    +G VE AF +  +   +G    I +++ L+  C       +AL+
Sbjct: 276 DPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALD 335

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L++ M     +P V   N LI  LC    L + ++V   M+  G  PN  TYSIL+    
Sbjct: 336 LWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFA 395

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHV 425
           +  D+       ++    G  PN+V + C++ +  +   +++A +L E +
Sbjct: 396 KSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKM 445



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 170/403 (42%), Gaps = 34/403 (8%)

Query: 30  HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----- 84
           H  + L+ + +      L  +M++ GL+     Y+     +CK+ + +  A + F     
Sbjct: 149 HLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDR-VDAAHKLFVEMSN 207

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKV 143
           K  P   ++   M+ S+C + K  +         + AG  K    +Y  LI    K G++
Sbjct: 208 KGCPPDAVTYTTMVSSLCKAGKIDDAR-------ELAGRFKPSVPVYNALIDGMCKEGRI 260

Query: 144 DA-------MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEM-----NAEVHPVDPD 190
           +        M +N V P+ V ++ +I +   SG V+ AF + A+M     +A +H   P 
Sbjct: 261 EVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTP- 319

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
                 L+K C   G++  A +++K++ +   +     Y   I+     G  E A  V D
Sbjct: 320 ------LIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCD 373

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            M + G +P+    S LID    +G +  A E      + G    +++Y+ ++       
Sbjct: 374 QMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNS 433

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            + +A  L E M      P   T N  I  LC   ++   M++L  M+  G  PN  TY+
Sbjct: 434 MFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYN 493

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            LL A  R +  E    L  + +   + PNLV +  ++   SR
Sbjct: 494 ELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSR 536



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 166/399 (41%), Gaps = 30/399 (7%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    ++GRI   I LL +M   G+ D + V ++   N       ++ AF  F  +
Sbjct: 247 YNALIDGMCKEGRIEVAIKLLGEMMDNGV-DPNVVSYSCIINSLCVSGNVELAFALFAQM 305

Query: 88  ----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                +  + TF  L+  C        A  + +L+ + G + +   Y TLI     +G +
Sbjct: 306 FLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSL 365

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +   +           P+   ++ LI    +SG +  A +    M +  H   P+ +T  
Sbjct: 366 EEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMIS--HGCRPNVVTYT 423

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIA--INCCSQTGDWEFACSVYDDM 252
            ++         D+A     ++ K  ++G TP   T    I      G  E+A  + + M
Sbjct: 424 CMVDVLCKNSMFDQANS---LVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERM 480

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
              G +P+    + L+D      K E AF + QE + + +   +++Y++++   S A   
Sbjct: 481 QGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMM 540

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQL---PKTMEVLSDMKSLGLCPNTITY 369
            +AL+L+         P   T N +I A C   ++    + +E +S MK     P+ ITY
Sbjct: 541 GEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWH--PDIITY 598

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + L+       ++E  +  L +A   G+ PN   +  ++
Sbjct: 599 TSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALV 637



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 73/347 (21%), Positives = 146/347 (42%), Gaps = 20/347 (5%)

Query: 28  QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +H++  LI+    +G++ E +DL + M + G       Y+     +C S  +++EA + 
Sbjct: 313 NIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLC-SNGSLEEALQV 371

Query: 84  FKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
              +      P ++T+++L+   A S D  GA +    +   G + +   YT ++    K
Sbjct: 372 CDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCK 431

Query: 140 SGKVDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           +   D           E   P+ + FN  I     +G V+ A  +L  M    H   P+ 
Sbjct: 432 NSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQG--HGCLPNI 489

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
            T   L+ A     + + A  +++ I   N++     Y   +   S+ G    A  ++  
Sbjct: 490 TTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGK 549

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN-QGISVGIISYSSLMGACSNAK 310
              +G  PD +  + +I      GKV+ A ++++   + +     II+Y+SL+    N  
Sbjct: 550 ALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWM 609

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           N ++A+   +   +  + P  +T NAL+    D       + +L D+
Sbjct: 610 NIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDI 656


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 174/388 (44%), Gaps = 26/388 (6%)

Query: 43  ECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           E   L ++M ++G+    L  +K+ H     +CK +  ++E+ + F  V      P L T
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHV----LCK-KGNVQESEKLFSKVMKRGVCPNLFT 253

Query: 95  FNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSGKVDA------- 145
           FN+ +  +C      E A ++L  +   GL  D   Y TLI   C  S  V+A       
Sbjct: 254 FNIFIQGLCRKGAIDEAA-RLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKM 312

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           +   V+P+   +N +I    ++G +  A  +L +  A      PD  T  +L+    N G
Sbjct: 313 VNSGVEPNEFTYNTIINGFCKAGMMQNADKILRD--AMFKGFIPDEFTYSSLINGLCNDG 370

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            ++RA  V+    +   K +  +Y   +   S+ G    A  +  DM + G  PD    +
Sbjct: 371 DMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYN 430

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            +++     G +  A  IL +A  +G    I ++++L+      +N  KA+E+ + M S 
Sbjct: 431 LVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSH 490

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + P V T N L+  LC   +L   ++    M   G  PN ITY+IL+ +  +   V   
Sbjct: 491 GITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEA 550

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCS 412
           + L  + K  G+ P++V    +I G+CS
Sbjct: 551 MELFKEMKTRGLTPDIVTLCTLICGLCS 578



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 108/492 (21%), Positives = 196/492 (39%), Gaps = 80/492 (16%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N+LI    ++G + E   L   + ++G+      ++     +C+ + AI EA R  + 
Sbjct: 218 TFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCR-KGAIDEAARLLES 276

Query: 87  VPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + +    P + ++N L+   C  SK  E    + ++V  +G++ +   Y T+I    K+G
Sbjct: 277 IVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVN-SGVEPNEFTYNTIINGFCKAG 335

Query: 142 KV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            +        DAMF+   PD   +++LI      G ++RA  V  E  A         I 
Sbjct: 336 MMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYE--AMEKGFKHSIIL 393

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+K  +  G V +A ++ K + ++        Y + +N   + G    A  + +D  
Sbjct: 394 YNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAI 453

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            KG IPD    + LID       ++ A EIL    + GI+  +I+Y++L+     A+   
Sbjct: 454 AKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLD 513

Query: 314 -----------------------------------KALELYEHMKSIKLKPTVSTMNALI 338
                                              +A+EL++ MK+  L P + T+  LI
Sbjct: 514 NVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLI 573

Query: 339 TALCDGDQLPKTMEVLSDM-KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
             LC   +L K  E+   + K      +T  ++I++ A   K +V +   L  +      
Sbjct: 574 CGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDC 633

Query: 398 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 457
            P+   ++ +I      Y K   ++                   LA     E I  G +P
Sbjct: 634 APDNYTYRVMID----SYCKTGNID-------------------LAHTFLLENISKGLVP 670

Query: 458 TVEVVSKVLGCL 469
           +     KVL CL
Sbjct: 671 SFTTCGKVLNCL 682



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 19/316 (6%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +  +I   G  G  +   DVLAEM   V     + + IG +M+     G+V  A  V++ 
Sbjct: 43  YKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIG-IMRDYGRKGKVQEAVNVFER 101

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           +  Y+ + + + Y   +N   + G +  A  VY  M   G+ PD    +  +      G+
Sbjct: 102 MDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGR 161

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
             AA  +L     QG     +SY +++          +A  L++ M    + P + T N 
Sbjct: 162 PTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNK 221

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           LI  LC    + ++ ++ S +   G+CPN  T++I +    RK  ++    LL     +G
Sbjct: 222 LIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEG 281

Query: 397 VIPNLVMFKCII-GMC--SRRYEKARTLNEHVLSFNSG-RPQ------IENKWTSLALM- 445
           + P+++ +  +I G C  S+  E    L++ V   NSG  P       I N +    +M 
Sbjct: 282 LTPDVISYNTLICGFCKHSKLVEAECYLHKMV---NSGVEPNEFTYNTIINGFCKAGMMQ 338

Query: 446 ----VYREAIVAGTIP 457
               + R+A+  G IP
Sbjct: 339 NADKILRDAMFKGFIP 354



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 105/253 (41%), Gaps = 24/253 (9%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           + ++N LI    +Q  + + I++L+ M   G+      Y+     +CK++K       F 
Sbjct: 461 IFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFK 520

Query: 85  KLVP---NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            ++     P + T+N+L+ S C   K SE A ++ + ++  GL  D     TLI     +
Sbjct: 521 AMLEKGCTPNIITYNILIESFCKDRKVSE-AMELFKEMKTRGLTPDIVTLCTLICGLCSN 579

Query: 141 GKVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           G++D  +E                +FN +I A  +   V  A  +  +M        PD+
Sbjct: 580 GELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGS--DCAPDN 637

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVY 249
            T   ++ +    G +D A     ++   +    P   T    +NC   T     A  + 
Sbjct: 638 YTYRVMIDSYCKTGNIDLAHTF--LLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVII 695

Query: 250 DDMTKKGVIPDEV 262
           + M + G++P+EV
Sbjct: 696 NLMVQNGIVPEEV 708



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 83/195 (42%), Gaps = 3/195 (1%)

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGKVEA 279
            K T E Y   I      G +E    V  +M K     + + V++  + D+ G  GKV+ 
Sbjct: 36  FKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDY-GRKGKVQE 94

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A  + +          + SY+++M        + +A ++Y  MK I + P V T    + 
Sbjct: 95  AVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMK 154

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
           + C   +    + +L++M   G   N ++Y  ++    +++       L  +  + G+ P
Sbjct: 155 SFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICP 214

Query: 400 NLVMFKCIIGMCSRR 414
           +++ F  +I +  ++
Sbjct: 215 DILTFNKLIHVLCKK 229


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/395 (23%), Positives = 174/395 (44%), Gaps = 16/395 (4%)

Query: 23  HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
           + +S    S N ++ +  + E I L  ++  K +       H        S   +K+A +
Sbjct: 222 YGLSPSPESCNAVLSRLPLDEAIALFRELPDKNVCS-----HNILLKALLSAGRLKDACQ 276

Query: 83  FF-KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            F ++   P + T+  ++       + E A ++L  +   GL+++  +YT++I      G
Sbjct: 277 HFDEMSSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKG 336

Query: 142 KV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +V        D     V  D VVF  +I+     G +  A  +  EM  +   +  D +T
Sbjct: 337 QVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEM--QKRGLAADRVT 394

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+     AG++  A  V + +    +      YT+ I+   + G+   A  V+++M 
Sbjct: 395 HTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMV 454

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            + V P+ V  +AL D     G V AA E+L E  N+G+ + + +Y+SL+       N +
Sbjct: 455 GRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLE 514

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A+ +   M++   +  V T   LI  LC   +  +   +L +M   G+ P+  TY++L+
Sbjct: 515 QAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLM 574

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                   VE G  LL    E  V PN+V +  ++
Sbjct: 575 NGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLM 609



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/398 (23%), Positives = 171/398 (42%), Gaps = 17/398 (4%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS---- 93
           +G +   + LL++M  KGL     VY +    +C ++  + +A R  + +    ++    
Sbjct: 300 RGELENAVKLLDEMAAKGLESNATVYTSVIALLC-NKGQVSDALRVLEDMTMHGVALDAV 358

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DA 145
            F  ++S   S  D   A ++   +Q+ GL AD   +T LI    ++G++        + 
Sbjct: 359 VFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEM 418

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           + + +  D V +  LI    + G +  AF V  EM      V P+ +T  AL       G
Sbjct: 419 VDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRR--VAPNVVTYTALSDGLCKQG 476

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            V  A E+   +    ++     Y   IN   + G+ E A  +  +M   G   D    +
Sbjct: 477 DVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYT 536

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LID    +G+ + A  +LQE  ++GI   I +Y+ LM     +   +   +L E M   
Sbjct: 537 TLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEK 596

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            ++P V T N+L+   C    +  T E+   M S  + PN  TY+IL+    +  +++  
Sbjct: 597 NVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEA 656

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTL 421
           L    +  E G+      +  +I + +  +++ +AR  
Sbjct: 657 LYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVF 694



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 89/401 (22%), Positives = 174/401 (43%), Gaps = 17/401 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L  +G++S+ + +LEDM   G+  +D V      +   S+  +  A R F+ +    L+ 
Sbjct: 332 LCNKGQVSDALRVLEDMTMHGVA-LDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAA 390

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
              T   L++    + + + A +VL+ + + GL  D   YT LI    K G +   F   
Sbjct: 391 DRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVH 450

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  V P+ V + AL     + G V  A ++L EM  +   ++ +  T  +L+    
Sbjct: 451 NEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNK--GLELNVYTYNSLINGLC 508

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G +++A  +   +     +     YT  I+   ++G+++ A ++  +M  KG+ P   
Sbjct: 509 KFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIA 568

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L++    +G+VE   ++L+    + +   +++Y+SLM      KN +   E+Y+ M
Sbjct: 569 TYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGM 628

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            S ++ P  +T N LI   C    + + +    +M   GL     +YS L+    +K   
Sbjct: 629 HSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKF 688

Query: 383 EVGLMLLSQAKEDGVI--PNLVMFKCIIGMCSRRYEKARTL 421
               +   + + +G+   P++  F   I       E   TL
Sbjct: 689 SEARVFFDKMRNEGLTAEPDVYSFYMDISFNEDNLESTITL 729



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 161/360 (44%), Gaps = 34/360 (9%)

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           N   S+  + EA   F+ +P+  + + N+L+                 L+    LK  C+
Sbjct: 232 NAVLSRLPLDEAIALFRELPDKNVCSHNILLKA---------------LLSAGRLKDACQ 276

Query: 129 LYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
            +  + +                PD V +  ++      G ++ A  +L EM A+   ++
Sbjct: 277 HFDEMSS---------------PPDVVTYGTMVHGYCVRGELENAVKLLDEMAAK--GLE 319

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
            +     +++    N GQV  A  V + +  + +     V+T  I+     GD   A  +
Sbjct: 320 SNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRL 379

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +++M K+G+  D V  +ALI+    AG+++ A  +LQE  ++G+ V +++Y+ L+     
Sbjct: 380 FEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCK 439

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
             N  +A  ++  M   ++ P V T  AL   LC    +    E+L +M + GL  N  T
Sbjct: 440 RGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYT 499

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNEHVL 426
           Y+ L+    +  ++E  + ++++ +  G   ++  +  +I  +C S  +++A  + + +L
Sbjct: 500 YNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEML 559



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 163/370 (44%), Gaps = 17/370 (4%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPNPTLS--- 93
           +G ++    L E+M+++GL   D+V H    N +C++ + +KEA R  + + +  L    
Sbjct: 370 KGDLAAARRLFEEMQKRGLA-ADRVTHTALINGLCRAGE-LKEADRVLQEMVDKGLDVDV 427

Query: 94  -TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---- 148
            T+ +L+       +   AF+V   +    +  +   YT L     K G V A  E    
Sbjct: 428 VTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHE 487

Query: 149 ----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                ++ +   +N+LI    + G +++A  ++ EM A  H  D    T   L+     +
Sbjct: 488 MCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDV--YTYTTLIDTLCKS 545

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G+ DRA  + + +    IK +   Y + +N    +G  E    + + M +K V P+ V  
Sbjct: 546 GEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTY 605

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++L+        +++  EI +   +Q ++    +Y+ L+     A+N ++AL  ++ M  
Sbjct: 606 NSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIE 665

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             L+ T S+ +ALI  L    +  +       M++ GL      YS  +     +D++E 
Sbjct: 666 KGLRLTASSYSALIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMDISFNEDNLES 725

Query: 385 GLMLLSQAKE 394
            + L  +  E
Sbjct: 726 TITLCDELVE 735


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 177/413 (42%), Gaps = 42/413 (10%)

Query: 6   KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY-- 63
           ++++QF Y   K   Y H+++  +   NRL+R                      D+V+  
Sbjct: 131 ESVIQFFYWISKRPFYKHNMNCFISMLNRLVR----------------------DRVFAP 168

Query: 64  --HARFFNV--CKSQKAIKEAFRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVL 115
             H R   +  C++++ I+    F   +       +L + N L+   A  +  EGA  + 
Sbjct: 169 ADHIRILMIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLY 228

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKV-------DAMFE-NVKPDRVVFNALITACGQS 167
           + +  +G++     + TLI   +K GKV         +F+ ++ PD   + +LI    ++
Sbjct: 229 KQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRN 288

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
             +D AF V   M  E    DP+ +T   L+    N G+VD A ++ + + +  I+ T  
Sbjct: 289 RNLDLAFGVFDRMVKE--GCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVY 346

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            YT+ I         E A  +   M K+G  P+    +ALI      GK+E A  +  + 
Sbjct: 347 TYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKM 406

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
             +G+    ++Y++L+        +  AL+++  M+         T N +I  LC G  +
Sbjct: 407 LKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDI 466

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
            K M +   M  +G  P  +TY+ L+     K +V     LL   KE+G  P+
Sbjct: 467 EKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPD 519



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 115/496 (23%), Positives = 210/496 (42%), Gaps = 80/496 (16%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRF 83
           +YN LI +    GR S  + +   ME  G L   + Y+     +C     +KA+    + 
Sbjct: 417 TYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKM 476

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K+ P PT+ T+N L++   +  +   A ++L L++E G + D   Y  L++  +K GK+
Sbjct: 477 LKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 536

Query: 144 DA-------MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEM------------NAE 183
           ++       M E  + P+ V +  LI    + G VD A  +L  M            NA 
Sbjct: 537 ESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAV 596

Query: 184 VHPVD---------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
           ++ +                      P+ IT   L+      G+   A +++  + K   
Sbjct: 597 INGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKR-- 654

Query: 223 KGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
           K  P +YT +  I    Q G  + A  +  +M +KG+ PDEV  ++LID     G+++ A
Sbjct: 655 KCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHA 714

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNA------------------------KNWQKAL 316
           F +L+   + G      +YS L+                               N++   
Sbjct: 715 FLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVS 774

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            L   M  I  +PT+ T + L++ LC   +  +  +++ DMK  G CP+   Y  LL+A 
Sbjct: 775 NLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAH 834

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQ 434
            +  +V+  L +    +  G   +L +++ +I  +C + + E+A+ L +++L       +
Sbjct: 835 CKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADE 894

Query: 435 IENKWTSLALMVYREA 450
           I   WT L   + +E 
Sbjct: 895 I--VWTVLVDGLLKEG 908



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 164/387 (42%), Gaps = 13/387 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RFFKLVPN 89
           N L  +GR+ E +D+LE+M  KG+      Y      +C  +   +      R  K    
Sbjct: 318 NGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCR 377

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P + T+  L+S  +     E A  +   + + GL  +   Y  LI      G+      +
Sbjct: 378 PNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKI 437

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F  ++      +   +N +I      G +++A  VL E   ++ P+ P  +T   L+   
Sbjct: 438 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAM-VLFEKMLKMGPL-PTVVTYNTLINGY 495

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G V+ A  +  ++ +   +     Y   ++  S+ G  E A   + +M + G+ P+ 
Sbjct: 496 LTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNP 555

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LID     GKV+ A  +L+  +  G +  + SY++++   S    + +A ++ + 
Sbjct: 556 VSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDK 615

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    L P V T   LI  LC   +     ++  DM+     PN  TYS L+    ++  
Sbjct: 616 MAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGK 675

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
            +   +LL + +  G+ P+ V F  +I
Sbjct: 676 ADEAEILLKEMERKGLAPDEVTFTSLI 702



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/445 (21%), Positives = 182/445 (40%), Gaps = 34/445 (7%)

Query: 101 VCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNA 159
           + A  KD+E   Q    + +    K +   + +++    +    D +F      R++   
Sbjct: 123 IVAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVR----DRVFAPADHIRIL--- 175

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
           +I AC     + R  D L E++           +   L+   A    V+ AR +YK +  
Sbjct: 176 MIKACRNEEEIRRVADFLNEISG--MGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLN 233

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
             I+ +   +   IN  S+ G    A  +   + +  + PD    ++LI        ++ 
Sbjct: 234 SGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDL 293

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           AF +      +G     ++YS+L+    N     +AL++ E M    ++PTV T    IT
Sbjct: 294 AFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPIT 353

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
           ALC  +   + +E+++ MK  G  PN  TY+ L+    R   +EV + L  +  ++G++P
Sbjct: 354 ALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVP 413

Query: 400 NLVMFKCIIG-MC-SRRYEKARTLNEHVLSFNSGRPQIENKWT--------------SLA 443
           N V +  +I  +C   R+  A      +  +  G   + N  T                A
Sbjct: 414 NTVTYNALINELCVGGRFSTALK----IFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKA 469

Query: 444 LMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSL 500
           ++++ + +  G +PTV   + ++       N +   RL++ +   G   D    + L S 
Sbjct: 470 MVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSG 529

Query: 501 IDGFGEYDPRAFSLLEEAASFGIVP 525
              +G+ +  +F   +E    G+ P
Sbjct: 530 FSKWGKLESASF-YFQEMVECGLNP 553



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/349 (19%), Positives = 144/349 (41%), Gaps = 36/349 (10%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           NP + ++N +++  +       A ++   + E GL  +   YTTLI    ++G+    F+
Sbjct: 587 NPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFK 646

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      P+   +++LI    Q G  D A  +L EM  E   + PD +T  +L+  
Sbjct: 647 IFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEM--ERKGLAPDEVTFTSLIDG 704

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI-----NCC------------------- 236
               G++D A  + + +     K     Y++ +      C                    
Sbjct: 705 FVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPH 764

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            +  ++E   ++   M++ G  P     S L+      G+   A +++++ K +G     
Sbjct: 765 EKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDR 824

Query: 297 -ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
            I YS L+  C N +    AL+++  +++   +  +S   ALI ALC   Q+ +   +  
Sbjct: 825 EIYYSLLIAHCKNLE-VDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFD 883

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           +M       + I +++L+    ++ ++++ + LL   +     PN+  +
Sbjct: 884 NMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTY 932



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 62/301 (20%), Positives = 117/301 (38%), Gaps = 39/301 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
           L R GR      +  DME++  L     Y +  + +C+  KA  EA    K +    L+ 
Sbjct: 635 LCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKA-DEAEILLKEMERKGLAP 693

Query: 94  ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---------- 140
              TF  L+         + AF +LR + + G K + + Y+ L+    K           
Sbjct: 694 DEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAV 753

Query: 141 ----------GKVDAMFENV------------KPDRVVFNALITACGQSGAVDRAFDVLA 178
                      + D  FE V            +P    ++ L++   + G    A  ++ 
Sbjct: 754 QHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVK 813

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
           +M       D + I    L+  C N  +VD A +++  I     +    +Y   I    +
Sbjct: 814 DMKERGFCPDRE-IYYSLLIAHCKNL-EVDHALKIFHSIEAKGFQLHLSIYRALICALCK 871

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G  E A +++D+M +K    DE+  + L+D     G+++   ++L   +++  +  I +
Sbjct: 872 AGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQT 931

Query: 299 Y 299
           Y
Sbjct: 932 Y 932


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 192/421 (45%), Gaps = 26/421 (6%)

Query: 7   NMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL---DMDKVY 63
           ++L + Y +        DV  Q+     L+  G + E   + E M   GL+   D   VY
Sbjct: 162 DLLVYTYKDWGSDPRVFDVFFQV-----LVDFGLLREARRVFEKMLNYGLVLSVDSCNVY 216

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEA 121
             R    C         FR F  V     ++++N+++  VC   +  E A  +L L++  
Sbjct: 217 LTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKE-AHHLLLLMELK 275

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRA 173
           G   D   Y+T++    + G++D +++         +KP+  ++ ++I    +   +  A
Sbjct: 276 GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 335

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTI 231
            +  +EM  +   + PD +    L+      G +  A + +  +H  +I  TP+V  YT 
Sbjct: 336 EEAFSEMIRQ--GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDI--TPDVLTYTA 391

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            I+   Q GD   A  ++ +M  KG+ PD V  + LI+    AG ++ AF +       G
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 451

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
            S  +++Y++L+       +   A EL   M  I L+P + T N+++  LC    + + +
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
           +++ + ++ GL  +T+TY+ L+ A  +  +++    +L +    G+ P +V F  ++ G 
Sbjct: 512 KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 571

Query: 411 C 411
           C
Sbjct: 572 C 572



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 202/446 (45%), Gaps = 41/446 (9%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQ 74
           V   + SYN +I    + GRI E   LL  ME KG       Y      + RF  + K  
Sbjct: 242 VCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVW 301

Query: 75  KAIKEAFRFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           K I E  +   L PN  +  S   +L  +C  ++  E   +++R     G+  D  +YTT
Sbjct: 302 KLI-EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR----QGILPDTVVYTT 356

Query: 133 LITTCAKSGKVDA----MFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           LI    K G + A     +E    ++ PD + + A+I+   Q G +  A  +  EM  + 
Sbjct: 357 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCK- 415

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDW 242
             ++PD +T   L+     AG +  A  V+   H      +P V  YT  I+   + GD 
Sbjct: 416 -GLEPDSVTFTELINGYCKAGHMKDAFRVHN--HMIQAGCSPNVVTYTTLIDGLCKEGDL 472

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           + A  +  +M K G+ P+    +++++    +G +E A +++ E +  G++   ++Y++L
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 532

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           M A   +    KA E+ + M    L+PT+ T N L+   C    L    ++L+ M + G+
Sbjct: 533 MDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGI 592

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTL 421
            PN  T++ L+     +++++    +       GV P+   ++ ++ G C     KAR +
Sbjct: 593 APNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHC-----KARNM 647

Query: 422 NEHVLSFNSGRPQIENKWTSLALMVY 447
            E    F     +++ K  S+++  Y
Sbjct: 648 KEAWFLFQ----EMKGKGFSVSVSTY 669



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 167/406 (41%), Gaps = 14/406 (3%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           Y  DV       N   R G + +   L+E M+RKGL     +Y +    +C+  K  +  
Sbjct: 277 YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 336

Query: 81  FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-T 136
             F +++     P    +  L+       D   A +    +    +  D   YT +I+  
Sbjct: 337 EAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 396

Query: 137 CAKSGKVDA------MF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
           C     V+A      MF + ++PD V F  LI    ++G +  AF V   M        P
Sbjct: 397 CQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA--GCSP 454

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           + +T   L+      G +D A E+   + K  ++     Y   +N   ++G+ E A  + 
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 514

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
            +    G+  D V  + L+D    +G+++ A EIL+E   +G+   I++++ LM      
Sbjct: 515 GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLH 574

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
              +   +L   M +  + P  +T N+L+   C  + L     +  DM S G+ P+  TY
Sbjct: 575 GMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTY 634

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
             L+    +  +++    L  + K  G   ++  +  +I G   R+
Sbjct: 635 ENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRK 680



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 131/284 (46%), Gaps = 10/284 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   TF  L++    +   + AF+V   + +AG   +   YTTLI    K G +D+  E 
Sbjct: 419 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 478

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   ++P+   +N+++    +SG ++ A  ++ E   E   ++ D +T   LM A 
Sbjct: 479 LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF--EAAGLNADTVTYTTLMDAY 536

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             +G++D+A+E+ K +    ++ T   + + +N     G  E    + + M  KG+ P+ 
Sbjct: 537 CKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNA 596

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++L+        ++AA  I ++  ++G+     +Y +L+     A+N ++A  L++ 
Sbjct: 597 TTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 656

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           MK      +VST + LI       +  +  EV   M+  GL  +
Sbjct: 657 MKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700



 Score = 43.1 bits (100), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 5/154 (3%)

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELY 319
           +VF   L+DF    G +  A  + ++  N G+ + + S +  +   S +      A+ ++
Sbjct: 179 DVFFQVLVDF----GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVF 234

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
                + +   V++ N +I  +C   ++ +   +L  M+  G  P+ I+YS ++    R 
Sbjct: 235 REFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRF 294

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            +++    L+   K  G+ PN  ++  IIG+  R
Sbjct: 295 GELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCR 328


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 168/393 (42%), Gaps = 17/393 (4%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPTLSTFNMLMS-VC 102
           L + ME KG+              C+ +K   A     +  KL   P   TF+ L++ +C
Sbjct: 110 LCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLC 169

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAMFE-NVKPDR 154
              + SE    V R+V E G K D     TL+     SGK       +D M E   +P+ 
Sbjct: 170 LEGRVSEALELVDRMV-EMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNA 228

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           V +  ++    +SG    A ++L +M  E   +  D +    ++      G +D A  ++
Sbjct: 229 VTYGPVLNVMCKSGQTALAMELLRKM--EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF 286

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             +    I      Y I I      G W+    +  DM K+ + P+ V  S LID     
Sbjct: 287 NEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKE 346

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           GK+  A E+ +E  ++GI+   I+Y+SL+       +  KA ++ + M S    P + T 
Sbjct: 347 GKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTF 406

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N LI   C  +++   +E+   M   G+  +T+TY+ L+        + V   L  +   
Sbjct: 407 NILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVS 466

Query: 395 DGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
             V PN+V +K ++ G+C     EKA  + E +
Sbjct: 467 RKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 499



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 148/333 (44%), Gaps = 11/333 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
           P PT+  F+ L S  A +K  +    + + ++  G+  +    + +I    +  K+    
Sbjct: 84  PLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAF 143

Query: 144 DAMFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            AM + +K    P+ + F+ LI      G V  A +++  M    H   PD ITI  L+ 
Sbjct: 144 SAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK--PDLITINTLVN 201

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               +G+   A  +   + +Y  +     Y   +N   ++G    A  +   M ++ +  
Sbjct: 202 GLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL 261

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  S +ID     G ++ AF +  E + +GI+  II+Y+ L+G   NA  W    +L 
Sbjct: 262 DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLL 321

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M   K+ P V T + LI +     +L +  E+  +M   G+ P+TITY+ L+    ++
Sbjct: 322 RDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKE 381

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + ++    ++      G  PN+  F  +I G C
Sbjct: 382 NHLDKANQMVDLMVSKGCDPNIRTFNILINGYC 414



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/420 (21%), Positives = 180/420 (42%), Gaps = 60/420 (14%)

Query: 33  NRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           N L  +GR+SE ++L++ M   G    L+ ++ + +     +C S K  +      K+V 
Sbjct: 166 NGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNG----LCLSGKEAEAMLLIDKMVE 221

Query: 89  ---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
               P   T+  +++V   S  +  A ++LR ++E  +K D   Y+ +I    K G +D 
Sbjct: 222 YGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDN 281

Query: 146 MF-------------------------------------------ENVKPDRVVFNALIT 162
            F                                             + P+ V F+ LI 
Sbjct: 282 AFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLID 341

Query: 163 ACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
           +  + G +  A ++  EM   +H  + PD IT  +L+        +D+A ++  ++    
Sbjct: 342 SFVKEGKLREAEELHKEM---IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
                  + I IN   +    +    ++  M+ +GV+ D V  + LI      GK+  A 
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 458

Query: 282 EILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
           E+ QE  ++ +   I++Y  L+ G C N ++ +KALE++E ++  K++  +   N +I  
Sbjct: 459 ELFQEMVSRKVPPNIVTYKILLDGLCDNGES-EKALEIFEKIEKSKMELDIGIYNIIIHG 517

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           +C+  ++    ++   +   G+ P   TY+I++    +K  +    +L  + +EDG  P+
Sbjct: 518 MCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 170/393 (43%), Gaps = 17/393 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N + + G+ +  ++LL  ME + +  +D V ++   +      ++  AF  F  +     
Sbjct: 236 NVMCKSGQTALAMELLRKMEERNI-KLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGI 294

Query: 89  NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
              + T+N+L+   C + +  +GA ++LR + +  +  +   ++ LI +  K GK+    
Sbjct: 295 TTNIITYNILIGGFCNAGRWDDGA-KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 353

Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
               + +   + PD + + +LI    +   +D+A  ++  M ++    DP+  T   L+ 
Sbjct: 354 ELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK--GCDPNIRTFNILIN 411

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               A ++D   E+++ +    +      Y   I    + G    A  ++ +M  + V P
Sbjct: 412 GYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPP 471

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + V    L+D     G+ E A EI ++ +   + + I  Y+ ++    NA     A +L+
Sbjct: 472 NIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 531

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             +    +KP V T N +I  LC    L +   +   M+  G  P+  TY+IL+ A    
Sbjct: 532 CSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGD 591

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
            D    + L+ + K  G   +    K +I M S
Sbjct: 592 GDATKSVKLIEELKRCGFSVDASTIKMVIDMLS 624



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 150/351 (42%), Gaps = 27/351 (7%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  + +YN LI      GR  +   LL DM ++ + + + V  +   +    +  ++EA
Sbjct: 294 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKI-NPNVVTFSVLIDSFVKEGKLREA 352

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
               K + +    P   T+  L+         + A Q++ L+   G   + + +  LI  
Sbjct: 353 EELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILING 412

Query: 137 CAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K+ ++D   E         V  D V +N LI    + G ++ A ++  EM +   P  
Sbjct: 413 YCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP-- 470

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGD--WEF 244
           P+ +T   L+    + G+ ++A E+++ I K  ++    +Y I I+  C +   D  W+ 
Sbjct: 471 PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDL 530

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
            CS    +  KGV P     + +I      G +  A  + ++ +  G +    +Y+ L+ 
Sbjct: 531 FCS----LPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIR 586

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           A     +  K+++L E +K        ST+  +I  L DG      +++LS
Sbjct: 587 AHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDGRLKKSFLDMLS 637



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 10/181 (5%)

Query: 233 INCCSQTGDWEFACSV-YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
           INC     +  F C   +   + + +   E   S L+D      K + A ++ ++  +  
Sbjct: 32  INC---PNELSFCCERGFSAFSDRNLSYRERLRSGLVDI-----KADDAIDLFRDMIHSR 83

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
               +I +S L  A +  K +   L L + M+   +   + T++ +I   C   +L    
Sbjct: 84  PLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAF 143

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
             +  +  LG  PNTIT+S L+     +  V   L L+ +  E G  P+L+    ++ G+
Sbjct: 144 SAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGL 203

Query: 411 C 411
           C
Sbjct: 204 C 204


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 143/312 (45%), Gaps = 10/312 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P   T+  ++     +K  + A   +  +   G+K D  +Y  +++   +  KV+    +
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE      + P+ V +N LI    ++  ++ A+++  EM  + +   P  ++   L+   
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYV--PTEVSYNTLIDGF 124

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                +  A++V+  + + N       YT  I+  S++G  + A  V D M KKGV P+ 
Sbjct: 125 CKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNV 184

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              S LID      +V+ A ++L++   QGI+  +++Y+ L+ +   A   + A +L+  
Sbjct: 185 ATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRG 244

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M   +  PTV T N L+ ALC   QL     + ++M + G  P+ ITY  L     R   
Sbjct: 245 MAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGK 304

Query: 382 VEVGLMLLSQAK 393
           V     L+ + K
Sbjct: 305 VHEAQELMEKMK 316



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 119/255 (46%), Gaps = 2/255 (0%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           +KPD  ++N +++   Q   V+ A  +  +M  +   ++P+ +T   L+     A +++ 
Sbjct: 40  IKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQ--RINPNVVTYNTLINGLCKAWRIET 97

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A E++K +       T   Y   I+   +  D   A  V+D M +   +P+ V  + LID
Sbjct: 98  AYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLID 157

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
               +GKV+AA E+L     +G++  + +YS L+      +   +A +L E M +  + P
Sbjct: 158 GLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAP 217

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
           TV T N L+ +LC  D+L    ++   M      P  +TY+ LL A      ++    L 
Sbjct: 218 TVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLY 277

Query: 390 SQAKEDGVIPNLVMF 404
           ++    G  P+ + +
Sbjct: 278 AEMIAKGCPPDAITY 292



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/264 (21%), Positives = 115/264 (43%), Gaps = 3/264 (1%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           PD + +  ++    ++  +D A   + EM      + PD      ++       +V+ AR
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEM--ATRGIKPDAFIYNFVLSGLCQEEKVEEAR 64

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            +++ + K  I      Y   IN   +    E A  ++ +M  KG +P EV  + LID  
Sbjct: 65  LLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGF 124

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
                + AA ++  +         +++Y++L+   S +   Q A E+ + M    + P V
Sbjct: 125 CKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNV 184

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
           +T + LI   C   ++ +  ++L  M + G+ P  +TY+ILL +  R D +E    L   
Sbjct: 185 ATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRG 244

Query: 392 AKEDGVIPNLVMFKCII-GMCSRR 414
             +    P +V +  ++  +C  +
Sbjct: 245 MAQRRCHPTVVTYNTLLRALCHHK 268



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 131/307 (42%), Gaps = 13/307 (4%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NP 90
           RL +  RI + +  +E+M  +G+     +Y+     +C+ +K  +    F K+V    NP
Sbjct: 18  RLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINP 77

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSGKVDA--MF 147
            + T+N L++    +   E A+++ + +   G       Y TLI   C K   V A  +F
Sbjct: 78  NVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVF 137

Query: 148 E-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +     N  P+ V +  LI    +SG V  A +VL  M  +   V P+  T   L+    
Sbjct: 138 DKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKK--GVTPNVATYSCLIDGFC 195

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              +VD A ++ + +    I  T   Y I +N   +    E A  ++  M ++   P  V
Sbjct: 196 KVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVV 255

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L+    H  +++ A  +  E   +G     I+Y +L    + A    +A EL E M
Sbjct: 256 TYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKM 315

Query: 323 KSIKLKP 329
           K  K  P
Sbjct: 316 KLTKRNP 322



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/270 (22%), Positives = 103/270 (38%), Gaps = 46/270 (17%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    +  RI    +L ++M  KG +                             
Sbjct: 81  TYNTLINGLCKAWRIETAYELFKEMAGKGYV----------------------------- 111

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
              PT  ++N L+      KD   A  V   +  +    +   YTTLI   +KSGKV A 
Sbjct: 112 ---PTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAA 168

Query: 147 FE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            E         V P+   ++ LI    +   VD A  +L +M  +   + P  +T   L+
Sbjct: 169 AEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQ--GIAPTVVTYNILL 226

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
            +   A +++ A ++++ + +     T   Y   +         + A  +Y +M  KG  
Sbjct: 227 NSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCP 286

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           PD +    L      AGKV  A E++++ K
Sbjct: 287 PDAITYDTLAWGLTRAGKVHEAQELMEKMK 316


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 179/418 (42%), Gaps = 25/418 (5%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH-ARFFNVCKSQKAIKEAF- 81
           +L  ++RL     R  +    +DL + ME KG+     +Y  +   N C   + +  AF 
Sbjct: 71  RLIDFSRLFSVVARTKQYDLVLDLCKQMELKGI--AHNLYTLSIMINCCCRCRKLSLAFS 128

Query: 82  ---RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
              +  KL   P   TF+ L++ +C   + SE    V R+V E G K        L+   
Sbjct: 129 AMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMV-EMGHKPTLITLNALVNGL 187

Query: 138 AKSGKV-------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
             +GKV       D M E   +P+ V +  ++    +SG    A ++L +M  E   +  
Sbjct: 188 CLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM--EERKIKL 245

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D +    ++      G +D A  ++  +     K    +YT  I      G W+    + 
Sbjct: 246 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLL 305

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
            DM K+ + PD V  SALID     GK+  A E+ +E   +GIS   ++Y+SL+      
Sbjct: 306 RDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKE 365

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
               KA  + + M S    P + T N LI   C  + +   +E+   M   G+  +T+TY
Sbjct: 366 NQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTY 425

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
           + L+        +EV   L  +     V P++V +K ++ G+C     EKA  + E +
Sbjct: 426 NTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 176/390 (45%), Gaps = 19/390 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-QKAIKEAFRFFKLVPNPT 91
           N L   G++S+ + L++ M   G    +  Y      +CKS Q A+  A    + +    
Sbjct: 185 NGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTAL--AMELLRKMEERK 242

Query: 92  LS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--- 144
           +      +++++         + AF +   ++  G KAD  +YTTLI     +G+ D   
Sbjct: 243 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGA 302

Query: 145 -----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                 +   + PD V F+ALI    + G +  A ++  EM      + PD +T  +L+ 
Sbjct: 303 KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQ--RGISPDTVTYTSLID 360

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                 Q+D+A  +  ++           + I IN   +    +    ++  M+ +GV+ 
Sbjct: 361 GFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVA 420

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALEL 318
           D V  + LI      GK+E A E+ QE  ++ +   I+SY  L+ G C N +  +KALE+
Sbjct: 421 DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEP-EKALEI 479

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           +E ++  K++  +   N +I  +C+  ++    ++   +   G+ P+  TY+I++    +
Sbjct: 480 FEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCK 539

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           K  +    +L  + +EDG  PN   +  +I
Sbjct: 540 KGSLSEADLLFRKMEEDGHSPNGCTYNILI 569



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 136/340 (40%), Gaps = 37/340 (10%)

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
           D A D+  EM     P  P  I    L    A   Q D   ++ K +    I       +
Sbjct: 54  DDAVDLFQEMTRS-RP-RPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS 111

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
           I INCC +      A S    + K G  PD V  S LI+     G+V  A E++      
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171

Query: 291 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           G    +I+ ++L+ G C N K    A+ L + M     +P   T   ++  +C   Q   
Sbjct: 172 GHKPTLITLNALVNGLCLNGK-VSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTAL 230

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
            ME+L  M+   +  + + YSI++    +   ++    L ++ +  G   +++++  +I 
Sbjct: 231 AMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIR 290

Query: 409 GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGC 468
           G C                  +GR      W   A ++ R+ I     P V   S ++ C
Sbjct: 291 GFCY-----------------AGR------WDDGAKLL-RDMIKRKITPDVVAFSALIDC 326

Query: 469 L----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
                +L    ++ + +++  G+S D +  +   SLIDGF
Sbjct: 327 FVKEGKLREAEELHKEMIQR-GISPDTVTYT---SLIDGF 362



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 143/344 (41%), Gaps = 27/344 (7%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           Y  LIR     GR  +   LL DM ++ +   D V  +   +    +  ++EA    K +
Sbjct: 285 YTTLIRGFCYAGRWDDGAKLLRDMIKRKITP-DVVAFSALIDCFVKEGKLREAEELHKEM 343

Query: 88  P----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                +P   T+  L+         + A  +L L+   G   + + +  LI    K+  +
Sbjct: 344 IQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLI 403

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D   E         V  D V +N LI    + G ++ A ++  EM +    V PD ++  
Sbjct: 404 DDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVS--RRVRPDIVSYK 461

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGD--WEFACSVYDD 251
            L+    + G+ ++A E+++ I K  ++    +Y I I+  C +   D  W+  CS    
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCS---- 517

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           +  KGV PD    + +I      G +  A  + ++ +  G S    +Y+ L+ A     +
Sbjct: 518 LPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGD 577

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
             K+ +L E +K        ST+  ++  L DG      +++LS
Sbjct: 578 ATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGRLKKSFLDMLS 621



 Score = 43.1 bits (100), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           K + A ++ QE         +I +S L    +  K +   L+L + M+   +   + T++
Sbjct: 52  KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS 111

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            +I   C   +L      +  +  LG  P+T+T+S L+     +  V   L L+ +  E 
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171

Query: 396 GVIPNLVMFKCII-GMC 411
           G  P L+    ++ G+C
Sbjct: 172 GHKPTLITLNALVNGLC 188


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 149/333 (44%), Gaps = 12/333 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           +P + T N+++         + A +V   L+++   K     YT LI      G +D   
Sbjct: 76  SPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEAL 135

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +         ++PD   +N +     + G VDRAF+ +  +N+      PD IT   L++
Sbjct: 136 KLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNS--RGCKPDVITYNILLR 193

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A  N G+ D   +    I     +     Y+I I+   + G  E + ++   M +KG+ P
Sbjct: 194 ALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTP 253

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D      LI      GK++ A E L      G    I++Y+++M A     N   A+E++
Sbjct: 254 DAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIF 313

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             +  +   P VS+ N +++AL       + + ++S M S G+ P+ ITY+ L+    R 
Sbjct: 314 GKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRD 373

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCI-IGMC 411
             V+  + LL+        PN+V +K + +G+C
Sbjct: 374 GMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLC 406



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 148/359 (41%), Gaps = 18/359 (5%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           FFN     + I +A R   ++     P +  +N ++S    +   E A  VL  ++  G 
Sbjct: 20  FFN----SRNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGF 75

Query: 124 KADCKLYTTLITTCAKSGKVD---AMFE------NVKPDRVVFNALITACGQSGAVDRAF 174
             D   +  +I T    GK+D    +FE      N KP  + +  LI A    G +D A 
Sbjct: 76  SPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEAL 135

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
            +L EM +    ++PD  T   + +     G+VDRA E  + ++    K     Y I + 
Sbjct: 136 KLLDEMLS--RGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLR 193

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
                G W+       ++  +G  P+ V  S LI      GK+E +  +++  K +G++ 
Sbjct: 194 ALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTP 253

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
               Y  L+ A         A+E  + M      P +   N ++ ALC        +E+ 
Sbjct: 254 DAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIF 313

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             +  +G  PN  +Y+ +L A     D    L ++SQ    G+ P+++ +  +I    R
Sbjct: 314 GKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCR 372



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/402 (24%), Positives = 179/402 (44%), Gaps = 28/402 (6%)

Query: 28  QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            + +YN +I    +  RI     +L+ M+RKG    D V H         +  I  A + 
Sbjct: 43  DVFAYNAVISGFCKANRIESAKTVLDRMKRKGF-SPDVVTHNIMIGTFCGKGKIDLALKV 101

Query: 84  FK--LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           F+  L  N   PTL T+ +L+         + A ++L  +   GL+ D   Y  +     
Sbjct: 102 FEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLC 161

Query: 139 KSGKVDAMFENV--------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           K GKVD  FE V        KPD + +N L+ A    G  D     ++E+ +     +P+
Sbjct: 162 KEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFS--RGCEPN 219

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT----IAINCCSQTGDWEFAC 246
            +T   L+ +    G+++ +  + K++ +  +  TP+ Y     IA  C  + G  + A 
Sbjct: 220 VVTYSILISSLCRDGKIEESVNLVKVMKEKGL--TPDAYCYDPLIAAFC--REGKLDMAI 275

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
              D M   G +PD V  + ++      G  + A EI  +    G    + SY++++ A 
Sbjct: 276 EFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSAL 335

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            ++ +  +AL +   M S  + P V T N+LI+ LC    + + + +L+DM S    PN 
Sbjct: 336 WSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNI 395

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ++Y  +L+   +   ++  + +L+   E+G  PN   +  +I
Sbjct: 396 VSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLI 437



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 6/237 (2%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFAC 246
           PD I    L+K   N+  +D+A  V  ++ K+   G P+V  Y   I+   +    E A 
Sbjct: 8   PDVILCTKLIKGFFNSRNIDKATRVMGILEKH---GKPDVFAYNAVISGFCKANRIESAK 64

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGA 305
           +V D M +KG  PD V  + +I      GK++ A ++ +E  K+      +I+Y+ L+ A
Sbjct: 65  TVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEA 124

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
                   +AL+L + M S  L+P   T N +   LC   ++ +  E +  + S G  P+
Sbjct: 125 YILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPD 184

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
            ITY+ILL A   +   + G   +S+    G  PN+V +  +I    R  +   ++N
Sbjct: 185 VITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVN 241



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 139/334 (41%), Gaps = 15/334 (4%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
           I +G I E + LL++M  +GL      Y+     +CK  K +  AF F + + +    P 
Sbjct: 126 ILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGK-VDRAFEFVRTLNSRGCKPD 184

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK 151
           + T+N+L+    +    +   + +  +   G + +   Y+ LI++  + GK++     VK
Sbjct: 185 VITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVK 244

Query: 152 --------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                   PD   ++ LI A  + G +D A + L  M  +     PD +    +M A   
Sbjct: 245 VMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFL--PDIVNYNTIMAALCK 302

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G  D A E++  + +         Y   ++    +GD   A  +   M  KG+ PD + 
Sbjct: 303 NGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVIT 362

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            ++LI      G V+ A  +L +  +      I+SY +++     A     A+E+   M 
Sbjct: 363 YNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMI 422

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
               +P  +T   LI  +       + ME+ + +
Sbjct: 423 ENGCQPNETTYTLLIEGIGFSGSRTQAMELANSL 456


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 190/480 (39%), Gaps = 91/480 (18%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPNP--- 90
           L +Q R+   +DLL++M R G+   D V +      C      ++  R + KLV +P   
Sbjct: 203 LAKQDRLDHALDLLDEMPRSGV-QPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGAR 261

Query: 91  -TLSTFN-MLMSVC----------------------------------ASSKDSEGAFQV 114
             L+T+N ML  +C                                    S D +GA +V
Sbjct: 262 PNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARV 321

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVD-----------AMFENVK------------ 151
              + + GL  D  +Y +L+    ++G+V            A   N++            
Sbjct: 322 YSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDS 381

Query: 152 --------------------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
                               PD V F  LI    Q+G  ++AF +  E  A V     D 
Sbjct: 382 GMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE--ARVSGKQLDV 439

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
            +  +++    N G++  A +VY+ + K   K    +Y   I+   Q      A  +Y  
Sbjct: 440 FSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSK 499

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M   G  P  +  + LID    A K + A  + +E    G +  I +Y SL+    + K 
Sbjct: 500 MADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKK 559

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYS 370
              AL +++ +    LK  V   N LI  LC   ++ + + V SDMK    C PN +TY+
Sbjct: 560 IDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYN 619

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMCS--RRYEKARTLNEHVLS 427
            L+        ++    L +   EDG+ P+++ +   I G+CS  R +E  + L+E VLS
Sbjct: 620 TLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDE-VLS 678



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/332 (21%), Positives = 148/332 (44%), Gaps = 12/332 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P L T+N+++    +  D + A  +   ++   +  DC  Y+TL+   AK  ++D   + 
Sbjct: 156 PNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDL 215

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V+PD V +NAL+  C ++G  ++   V  ++  +     P+  T   ++   
Sbjct: 216 LDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPG-ARPNLATYNVMLDGL 274

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+     EV++ +   N++     Y I I+   ++GD + A  VY ++ K G++ D 
Sbjct: 275 CKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDA 334

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++L+     AG+V+ A++    A   G+   + +Y+ ++    ++    +A+EL++ 
Sbjct: 335 AMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDL 393

Query: 322 M-KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           + K +   P   T   LI  LC      K   +  + +  G   +  +YS ++       
Sbjct: 394 LEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVG 453

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            +   + +  +  +DG  PN  ++  +I G C
Sbjct: 454 RLVDAVKVYEKMDKDGCKPNSHIYNALISGFC 485



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 157/371 (42%), Gaps = 22/371 (5%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN L++     GR+ E     +     GL ++ + Y+     +  S   + EA   + L+
Sbjct: 337 YNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNL-RTYNIMIKGLFDS-GMVDEAIELWDLL 394

Query: 88  PN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                  P   TF  L+     +  +  AF +    + +G + D   Y+++I      G+
Sbjct: 395 EKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGR 454

Query: 143 -VDAM--FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
            VDA+  +E +     KP+  ++NALI+   Q      A  + ++M    +   P  IT 
Sbjct: 455 LVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMAD--NGCSPTVITY 512

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+     A +   A  V + + +         Y   I         + A S++  +  
Sbjct: 513 NTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILY 572

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKNWQ 313
           KG+  D +  + LI     AGKV+ A  +  + K  +     +++Y++LM          
Sbjct: 573 KGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYID 632

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA  L+  +    L+P + + N  I  LC  D++ + +++L ++ S G+ P  IT++IL+
Sbjct: 633 KAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILV 692

Query: 374 VACERKDDVEV 384
            A  +   ++V
Sbjct: 693 RAVIKYGPIQV 703



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 104/256 (40%), Gaps = 12/256 (4%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV       N L   GR+ + + + E M++ G      +Y+A     C+  +       +
Sbjct: 438 DVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIY 497

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            K+  N   PT+ T+N L+     ++  + A  V R + E G   D   Y +LI      
Sbjct: 498 SKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSD 557

Query: 141 GKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            K+D         +++ +K D ++ N LI     +G VD A  V ++M  E     P+ +
Sbjct: 558 KKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMK-EKKNCPPNLV 616

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   LM      G +D+A  ++  I +  ++     Y   I              + D++
Sbjct: 617 TYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEV 676

Query: 253 TKKGVIPDEVFLSALI 268
             +G+IP  +  + L+
Sbjct: 677 LSRGIIPTVITWNILV 692



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/227 (19%), Positives = 96/227 (42%), Gaps = 37/227 (16%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + P+  T   ++++    G +DRA  ++  + +  +      Y+  +   ++    + A 
Sbjct: 154 IAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHAL 213

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            + D+M + GV PD                                   ++ Y++L+G C
Sbjct: 214 DLLDEMPRSGVQPD-----------------------------------VVCYNALLGGC 238

Query: 307 SNAKNWQKALELYEHM-KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
             A  ++K + +++ + K    +P ++T N ++  LC   +  +  EV   M +  L P+
Sbjct: 239 FKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPD 298

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            ITY IL+    R  DV+    + S+  + G++ +  M+  ++ G C
Sbjct: 299 VITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFC 345



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 74/151 (49%), Gaps = 6/151 (3%)

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPTVSTMNALITALCDGDQ 346
           G + GI S+++L+ A   A+ +  A   +  +       ++ P + T N ++ +LC    
Sbjct: 114 GCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGD 173

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           L + + +   ++   + P+ ITYS L+    ++D ++  L LL +    GV P++V +  
Sbjct: 174 LDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNA 233

Query: 407 IIGMCSR--RYEKARTLNEHVLSFNSGRPQI 435
           ++G C +   +EK   + + ++     RP +
Sbjct: 234 LLGGCFKAGEFEKVMRVWDKLVKDPGARPNL 264


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 154/320 (48%), Gaps = 14/320 (4%)

Query: 113 QVLRLVQE---AGLKADCKLYTTLITTCAKSGKV---DAMFENVK-----PDRVVFNALI 161
           +VL+LV E    GLK D  +Y  +I    K+G+V   + +   ++     PD VV+  +I
Sbjct: 295 KVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVI 354

Query: 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
           +   + G V  A  +  EM  +   + PD +T  +++     +G++  ARE++  +    
Sbjct: 355 SGFCKLGNVSAACKLFDEMRRK--KIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKG 412

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           ++     YT  I+   + G+ + A SV++ M +KG+ P+ V  +AL D     G+++ A 
Sbjct: 413 LEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVAN 472

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           E+L E   +G+   + +Y++++       N ++ ++L E M      P   T   L+ A 
Sbjct: 473 ELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAY 532

Query: 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
           C   ++ K  E+L  M +  L P  +T+++L+        +E G  L+    E G++PN 
Sbjct: 533 CKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNA 592

Query: 402 VMFKCIIGM-CSRRYEKART 420
             F  ++   C +   +A T
Sbjct: 593 TTFNSLMKQYCIKNNMRATT 612



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 162/337 (48%), Gaps = 17/337 (5%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFENVK- 151
           N+++ +C + +  E A Q+LR +++ G+  D  +YTT+I+   K G V A   +F+ ++ 
Sbjct: 317 NIILLLCKNGEVVE-AEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRR 375

Query: 152 ----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
               PD V + ++I    +SG +  A ++  EM   V  ++PD +T  AL+     AG++
Sbjct: 376 KKIVPDIVTYTSVIHGICKSGKMVEAREMFNEM--LVKGLEPDEVTYTALIDGYCKAGEM 433

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             A  V+  + +  +      YT   +   + G+ + A  +  +M++KG+ P+    + +
Sbjct: 434 KEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTI 493

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ++     G +E   ++++E    G     I+Y++LM A        KA EL   M + +L
Sbjct: 494 VNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRL 553

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           +PT+ T N L+   C    L     ++  M   G+ PN  T++ L+     K+++     
Sbjct: 554 QPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTE 613

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNE 423
           +     + GV+P+   +  +I G C     KAR + E
Sbjct: 614 IYKAMHDRGVMPDSNTYNILIKGHC-----KARNMKE 645



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 75/363 (20%), Positives = 160/363 (44%), Gaps = 13/363 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           + G +S    L ++M RK ++     Y +    +CKS K ++    F +++     P   
Sbjct: 359 KLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEV 418

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           T+  L+     + + + AF V   + + GL  +   YT L     K+G++D   E     
Sbjct: 419 TYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEM 478

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               ++P+   +N ++    + G +++   ++ EM  ++    PD IT   LM A    G
Sbjct: 479 SRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEM--DLAGFYPDTITYTTLMDAYCKMG 536

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++ +A E+ +++    ++ T   + + +N    +G  E    + + M +KG++P+    +
Sbjct: 537 EMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFN 596

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           +L+        + A  EI +   ++G+     +Y+ L+     A+N ++A  L++ M   
Sbjct: 597 SLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEK 656

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
               T +T +ALI       +  +  ++  +M+  GL      Y I +     + + E+ 
Sbjct: 657 GYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWEIT 716

Query: 386 LML 388
           L L
Sbjct: 717 LEL 719



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 118/256 (46%), Gaps = 5/256 (1%)

Query: 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 217
           N ++    Q G V  A ++L +M    +   PD ++ G ++      G++D+  ++   +
Sbjct: 246 NIVLHCLCQLGKVREAHNLLVQMTDRGN--FPDVVSYGVVVSGYCRIGELDKVLKLVDEL 303

Query: 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 277
               +K    +Y   I    + G+   A  +   M K GV PD V  + +I      G V
Sbjct: 304 KGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNV 363

Query: 278 EAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
            AA ++  E + + I   I++Y+S++ G C + K   +A E++  M    L+P   T  A
Sbjct: 364 SAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKM-VEAREMFNEMLVKGLEPDEVTYTA 422

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           LI   C   ++ +   V + M   GL PN +TY+ L     +  +++V   LL +    G
Sbjct: 423 LIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKG 482

Query: 397 VIPNLVMFKCII-GMC 411
           + PN+  +  I+ G+C
Sbjct: 483 LQPNVYTYNTIVNGLC 498



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/413 (20%), Positives = 172/413 (41%), Gaps = 58/413 (14%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK-----EAFRFFKLVPNPT 91
           R G + + + L+++++ KGL   + +Y+     +CK+ + ++        R + + P+  
Sbjct: 289 RIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNV 348

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------- 143
           + T  ++   C     S  A ++   ++   +  D   YT++I    KSGK+        
Sbjct: 349 VYT-TVISGFCKLGNVS-AACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFN 406

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           + + + ++PD V + ALI    ++G +  AF V  +M  +   + P+ +T  AL      
Sbjct: 407 EMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQK--GLTPNVVTYTALADGLCK 464

Query: 204 AGQVDRAREVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            G++D A E   ++H+ + KG  P VYT    +N   + G+ E    + ++M   G  PD
Sbjct: 465 NGEIDVANE---LLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPD 521

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM----------------- 303
            +  + L+D     G++  A E+L+   N+ +   +++++ LM                 
Sbjct: 522 TITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIE 581

Query: 304 -----GACSNA-------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
                G   NA              N +   E+Y+ M    + P  +T N LI   C   
Sbjct: 582 WMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKAR 641

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
            + +   +  +M   G      TY  L+    ++        L  + ++ G++
Sbjct: 642 NMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLV 694



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 63/319 (19%), Positives = 138/319 (43%), Gaps = 11/319 (3%)

Query: 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGA-VDR 172
           VL L   A  ++  + + TL + C       A  +     R+VF      C +    V +
Sbjct: 96  VLNLFNWAKSQSQQQFHPTLESLCIVVHLSVASNDIQTAKRLVFEF----CAKPKIDVSK 151

Query: 173 AFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
           +F +  EM    +     H +      +     G V  A++++  + +Y +  + +   +
Sbjct: 152 SFHLFTEMLIYTYKDWGSHPLVFDLYFQVLVENGFVLEAQKLFHKLLRYGVVVSVDSCNL 211

Query: 232 AIN--CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
            ++   C+  G  + A  V+++  + GV  + V  + ++      GKV  A  +L +  +
Sbjct: 212 FLSRLSCNFEGI-KIAVKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTD 270

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           +G    ++SY  ++          K L+L + +K   LKP     N +I  LC   ++ +
Sbjct: 271 RGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVE 330

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
             ++L  M+  G+ P+ + Y+ ++    +  +V     L  + +   ++P++V +  +I 
Sbjct: 331 AEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIH 390

Query: 409 GMC-SRRYEKARTLNEHVL 426
           G+C S +  +AR +   +L
Sbjct: 391 GICKSGKMVEAREMFNEML 409


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 186/423 (43%), Gaps = 50/423 (11%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPTL 92
           ++ G +   I L E+  RKG+  +D         +CK    +KA +   +F +    P  
Sbjct: 333 LKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVG 392

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSGKVDA------ 145
             FN +++      D   A+  +  ++  GL+ +   Y +L+   C      +A      
Sbjct: 393 VFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKK 452

Query: 146 MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CAN 203
           M E  V P+   +N LI   G+S   DR F +L EM  E   + P+ I+ G L+   C +
Sbjct: 453 MVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEM--EKKGLKPNVISYGCLINCLCKD 510

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           A  ++    +  M+H+  +    ++Y + I+     G  + A   +D+M  + ++P  V 
Sbjct: 511 ANILEAEVILGDMVHR-GVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVT 569

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + LI+     GKV  A  +  E   +G+S  +I+Y+SL+   S+A N QKALELYE MK
Sbjct: 570 YNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMK 629

Query: 324 SIKLKPTVSTM----------------------------------NALITALCDGDQLPK 349
              +KPT++T                                   NALI    +   + K
Sbjct: 630 KSGIKPTLNTYHRLIAGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQK 689

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC-II 408
              + S M++ G+ P+ +TY+ L++   ++  +     L++  K  G+IP    +   I+
Sbjct: 690 ACSLHSAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIV 749

Query: 409 GMC 411
           G C
Sbjct: 750 GHC 752



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 156/363 (42%), Gaps = 16/363 (4%)

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQV 114
           M  ++     ++C   K + E+   + L+      P++++ N+ +    S+K  E   Q+
Sbjct: 110 MKPLFSDMLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQL 169

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQ 166
              + E+GL+ D  +Y   I    K G +    E         V P   V+N +I    +
Sbjct: 170 FSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCK 229

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
              +  A  +  EM      V P+ IT   L+      GQ++ A  + + +   N++ T 
Sbjct: 230 EKRMKDAEKLFDEMLD--RRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTI 287

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             +   +N   +    E A  V ++M   G +PD    + L D     G V+A+  + +E
Sbjct: 288 ITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASITLSEE 347

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
           A  +G+ +   + S L+ A     N +KA E+ +      L P     N ++   C    
Sbjct: 348 AVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGYCQVGD 407

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           + K    +  M+++GL PN +TY+ L+   CE K ++E     + +  E GV+PN+  + 
Sbjct: 408 INKAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMK-NMEEAEKCIKKMVEKGVLPNVETYN 466

Query: 406 CII 408
            +I
Sbjct: 467 TLI 469



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 123/505 (24%), Positives = 204/505 (40%), Gaps = 125/505 (24%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  +  YN +I    ++ R+ +   L ++M  + +      Y+      CK  + ++EA
Sbjct: 213 VSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQ-LEEA 271

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F   + +      PT+ TFN L++    ++  E A +VL  ++  G   D   YTTL   
Sbjct: 272 FNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDG 331

Query: 137 CAKSGKVDA------------------------------------------MFEN-VKPD 153
             K G VDA                                            EN + P 
Sbjct: 332 HLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPV 391

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE- 212
            V FN ++    Q G +++A+  + +M  E   + P+H+T  +L+K       ++ A + 
Sbjct: 392 GVFFNTIVNGYCQVGDINKAYTTIEKM--EAVGLRPNHVTYNSLVKKFCEMKNMEEAEKC 449

Query: 213 VYKMIHK--------YNI-----------------------KG-TPEV--YTIAINCCSQ 238
           + KM+ K        YN                        KG  P V  Y   INC  +
Sbjct: 450 IKKMVEKGVLPNVETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCK 509

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ------------- 285
             +   A  +  DM  +GV+P+    + LID +  AGK++ AF                 
Sbjct: 510 DANILEAEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVT 569

Query: 286 ---------------EAKN-------QGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
                          EA+N       +G+S  +I+Y+SL+   S+A N QKALELYE MK
Sbjct: 570 YNILINGLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMK 629

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              +KPT++T + LI A C  + L    ++  +M  + L P+ + Y+ L+       DV+
Sbjct: 630 KSGIKPTLNTYHRLI-AGCGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQ 688

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
               L S  +  G+ P+ + + C+I
Sbjct: 689 KACSLHSAMEAQGIQPDKMTYNCLI 713



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 158/375 (42%), Gaps = 16/375 (4%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           G I++    +E ME  GL      Y++     C+  K ++EA +  K +      P + T
Sbjct: 406 GDINKAYTTIEKMEAVGLRPNHVTYNSLVKKFCE-MKNMEEAEKCIKKMVEKGVLPNVET 464

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAM 146
           +N L+     S   +  FQ+L  +++ GLK +   Y  LI    K   +        D +
Sbjct: 465 YNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMV 524

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              V P+  ++N LI     +G +  AF    EM A    + P  +T   L+      G+
Sbjct: 525 HRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVA--REIVPTLVTYNILINGLCKKGK 582

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           V  A  +   I +  +      Y   I+  S  G+ + A  +Y+ M K G+ P       
Sbjct: 583 VMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHR 642

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LI   G  G V    +I QE     +    + Y++L+       + QKA  L+  M++  
Sbjct: 643 LIAGCGKEGLVLVE-KIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQG 701

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           ++P   T N LI       ++ K   +++DMK  GL P T TY IL+V   +  D +   
Sbjct: 702 IQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFDGAY 761

Query: 387 MLLSQAKEDGVIPNL 401
           +   +  E+G  P++
Sbjct: 762 VWYREMFENGFTPSV 776



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/328 (23%), Positives = 135/328 (41%), Gaps = 18/328 (5%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           + +YN LI    R      C  +LE+ME+KGL      Y      +CK    ++      
Sbjct: 462 VETYNTLIDGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILG 521

Query: 85  KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +V     P    +NML+     +   + AF+    +    +      Y  LI    K G
Sbjct: 522 DMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKG 581

Query: 142 KV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           KV        +   + +  D + +N+LI+    +G V +A ++   M      + P   T
Sbjct: 582 KVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKS--GIKPTLNT 639

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+  C   G V    ++Y+ + + N+     +Y   I+C  + GD + ACS++  M 
Sbjct: 640 YHRLIAGCGKEGLV-LVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAME 698

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            +G+ PD++  + LI      G++     ++ + K +G+     +Y  L+      K++ 
Sbjct: 699 AQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKLKDFD 758

Query: 314 KALELYEHMKSIKLKPTVSTMNALITAL 341
            A   Y  M      P+VS  + LIT L
Sbjct: 759 GAYVWYREMFENGFTPSVSICDNLITGL 786



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 105/239 (43%), Gaps = 20/239 (8%)

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+  CS +K   ++ ELY  MK   + P+V+++N  + +L    +   T+++ S++   G
Sbjct: 118 LLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESG 177

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKAR 419
           L P+   Y   + A  +  D++  + L++  K  GV P + ++  +I G+C  +R + A 
Sbjct: 178 LRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAE 237

Query: 420 TLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLG 467
            L + +L       +I   + +L            A  +     V    PT+   + +L 
Sbjct: 238 KLFDEMLDRRVAPNRI--TYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLN 295

Query: 468 CLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGI 523
            L      +  +R++E + V      R    +L DG    G  D  + +L EEA   G+
Sbjct: 296 GLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDA-SITLSEEAVRKGV 353


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 146/324 (45%), Gaps = 12/324 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
            FN+LM+      +   A +V   + +  L+     + TLI    K G +D  F      
Sbjct: 242 VFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHM 301

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                +PD   ++ALI A  +   +D A  +  EM      + P+ +    L+   +  G
Sbjct: 302 EKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCER--GLIPNDVIFTTLIHGHSRNG 359

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           Q+D  +E Y+ +    ++    +Y   +N   + GD   A ++ D M ++G+ PD+V  +
Sbjct: 360 QIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYT 419

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKS 324
            LID     G V+ A EI +E    GI +  + +S+L+ G C   +       L E +++
Sbjct: 420 TLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRA 479

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             +KP   T   ++ A C         ++L +M+S G  PN +TY++LL    +   ++ 
Sbjct: 480 -GMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKN 538

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII 408
             MLL      GV+P+ + +  ++
Sbjct: 539 ADMLLDAMLNVGVVPDDITYNTLL 562



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 157/360 (43%), Gaps = 16/360 (4%)

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           N+C +QK   E     K    PT+ +FN L++      + +  F++   ++++  + D  
Sbjct: 255 NICDAQKVFDE---ITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVF 311

Query: 129 LYTTLITTCAKSGKVDA----MFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
            Y+ LI    K  K+D      +E     + P+ V+F  LI    ++G +D   +   +M
Sbjct: 312 TYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKM 371

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
            ++   + PD +    L+      G +  AR +   + +  ++     YT  I+   + G
Sbjct: 372 LSK--GLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGG 429

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
           D + A  +  +M + G+  D V  SALI      G+V  A   L+E    G+    ++Y+
Sbjct: 430 DVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYT 489

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
            +M A     + Q   +L + M+S    P V T N L+  LC   Q+     +L  M ++
Sbjct: 490 MMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNV 549

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 420
           G+ P+ ITY+ LL    R  +         Q  E G++ +L  +K ++    R  +  R 
Sbjct: 550 GVVPDDITYNTLLEGHHRHANASKH---YKQKPEIGIVADLASYKSLVNELYRASKDHRN 606



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 58/128 (45%)

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           E  + G  + +  ++ LM       N   A ++++ +    L+PTV + N LI   C   
Sbjct: 230 EILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVG 289

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
            L     +   M+     P+  TYS L+ A  +++ ++    L  +  E G+IPN V+F 
Sbjct: 290 NLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFT 349

Query: 406 CIIGMCSR 413
            +I   SR
Sbjct: 350 TLIHGHSR 357


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 167/384 (43%), Gaps = 23/384 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L RQ R+   ++L   M  KG  D D V +    +   + K   EA + ++ + +  L
Sbjct: 127 NLLCRQNRLETALELFHSMPSKGR-DPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGL 185

Query: 93  S-----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           S        +++ +C+  +  + A++++  V + G+K +  +Y  LI    + G+VD   
Sbjct: 186 SPDYKACVALVVGLCSGGR-VDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAM 244

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +           PD V +N L+  C + G VD A  ++  M  E   V+PD  +   L+K
Sbjct: 245 KIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETM--ERSGVEPDLYSYNELLK 302

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGV 257
               A  VDRA  +  M+ +   KG  +V  Y   I    +         ++++M  KG+
Sbjct: 303 GFCKANMVDRAHLM--MVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGI 360

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKAL 316
            PD V  + LID     G      ++L E     +    I Y++++   C N K    A 
Sbjct: 361 RPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGK-VDVAH 419

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            ++  M    + P V + NAL+   C   ++   M +  +M+S GL P+ +TY +++   
Sbjct: 420 SVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGL 479

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPN 400
            R   + +   +  Q  E G   N
Sbjct: 480 IRGKKISLACRVWDQMMERGFTLN 503



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 93/408 (22%), Positives = 177/408 (43%), Gaps = 36/408 (8%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVC 102
           LL DM+  G +  D      + N+   Q  ++ A   F  +P    +P + ++ +++   
Sbjct: 106 LLLDMDSLGFVP-DIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDAL 164

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDR 154
            ++K  + A +V R + + GL  D K    L+      G+VD  +E         VK + 
Sbjct: 165 CNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNS 224

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           +V+NALI    + G VD+A  + A M+       PD +T   L+  C   G VD A  + 
Sbjct: 225 LVYNALIDGFCRMGRVDKAMKIKAFMSRT--GCVPDLVTYNILLNYCCEEGMVDEAVRLV 282

Query: 215 KMIHKYNIKGTPEVYT----IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           + + +  ++  P++Y+    +   C +   D      V + M  KG+  D V  + +I  
Sbjct: 283 ETMERSGVE--PDLYSYNELLKGFCKANMVDRAHLMMV-ERMQTKGMC-DVVSYNTVITA 338

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
              A +    +E+ +E   +GI   +++++ L+ A     +     +L + M  +++ P 
Sbjct: 339 FCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPD 398

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
                A++  LC   ++     V  DM   G+ P+ I+Y+ LL    +   V   + L  
Sbjct: 399 CIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFD 458

Query: 391 QAKEDGVIPNLVMFKCIIG-------------MCSRRYEKARTLNEHV 425
           + +  G+ P+ V +K I+G             +  +  E+  TLN H+
Sbjct: 459 EMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERGFTLNRHL 506



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/393 (21%), Positives = 168/393 (42%), Gaps = 21/393 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK--LVPNP 90
           ++L++ G I++ I L + M       +  V + RF  V      +  A  +++  ++P  
Sbjct: 18  SKLVKAGLINQAIYLFDQMTESNC-RVFSVDYNRFIGVLLRHSRLHLAHHYYRRHVIPRG 76

Query: 91  ------TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                 T S F   +    ++ +      +L  +   G   D   + T +    +  +++
Sbjct: 77  FSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLNLLCRQNRLE 136

Query: 145 AMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
              E           PD V +  +I A   +   D A  V   +  +   + PD+    A
Sbjct: 137 TALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDK--GLSPDYKACVA 194

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+    + G+VD A E+   + K  +K    VY   I+   + G  + A  +   M++ G
Sbjct: 195 LVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTG 254

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA- 315
            +PD V  + L+++    G V+ A  +++  +  G+   + SY+ L+     A    +A 
Sbjct: 255 CVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAH 314

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           L + E M++  +   VS  N +ITA C   +  K  E+  +M   G+ P+ +T++IL+ A
Sbjct: 315 LMMVERMQTKGMCDVVS-YNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDA 373

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             R+    V   LL +  +  V+P+ + +  ++
Sbjct: 374 FLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVV 406



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 120/270 (44%), Gaps = 12/270 (4%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           ++   R+ + + I+   ++G +++A   FD + E N  V  VD +   IG L++      
Sbjct: 5   SIGAHRLAYRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRF-IGVLLRH----S 59

Query: 206 QVDRAREVYK-MIHKYNIKGTPEVYTIAINC-CSQTGDWEFAC--SVYDDMTKKGVIPDE 261
           ++  A   Y+  +        P  Y+  I+  CS   +       S+  DM   G +PD 
Sbjct: 60  RLHLAHHYYRRHVIPRGFSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDI 119

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              +  ++      ++E A E+     ++G    ++SY+ ++ A  NAK + +A +++  
Sbjct: 120 WAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRR 179

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +    L P      AL+  LC G ++    E++  +   G+  N++ Y+ L+    R   
Sbjct: 180 LIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGR 239

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           V+  + + +     G +P+LV +  ++  C
Sbjct: 240 VDKAMKIKAFMSRTGCVPDLVTYNILLNYC 269


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 173/396 (43%), Gaps = 16/396 (4%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV+    + + L +  RI E   L++ M  +G       Y      +C+  K + EA   
Sbjct: 286 DVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGK-VDEARML 344

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGK 142
              VPNP +  FN L++   S    + A  V+   +   G   D   Y TLI    K G 
Sbjct: 345 LNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGY 404

Query: 143 V--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +        +   +  +P+ + +  LI    + G ++ A +VL EM+ +   ++   +  
Sbjct: 405 LVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNA--VGY 462

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDM 252
             L+ A     +V  A  ++  +     K  P+++T    I    +   +E A  +Y DM
Sbjct: 463 NCLISALCKDEKVQDALNMFGDMSSKGCK--PDIFTFNSLIFGLCKVNKFEEALGLYQDM 520

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             +GVI + +  + LI      G ++ A +++ +   +G  +  I+Y+ L+ A   A N 
Sbjct: 521 LLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNI 580

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +K L L+E M S  L P   + N LI  LC    +   +E L DM   GL P+ +TY+ L
Sbjct: 581 EKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSL 640

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +    +    +  L L  + + +G+ P+ + +  +I
Sbjct: 641 INGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI 676



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 137/305 (44%), Gaps = 16/305 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DA--M 146
           P + T+ +L+         E A  VL  +   GL  +   Y  LI+   K  KV DA  M
Sbjct: 422 PNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNM 481

Query: 147 FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F ++     KPD   FN+LI    +    + A  +  +M  E   V  + IT   L+ A 
Sbjct: 482 FGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLE--GVIANTITYNTLIHAF 539

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              G +   +E  K+++    +G P     Y   I    + G+ E   ++++DM  KG+ 
Sbjct: 540 LRRGAM---QEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLN 596

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+ +  + LI+     G ++ A E L++  ++G++  I++Y+SL+         Q+AL L
Sbjct: 597 PNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNL 656

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++ ++   + P   T N LI+  C          +LS     G  PN +T+ IL+    +
Sbjct: 657 FDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIK 716

Query: 379 KDDVE 383
           + D E
Sbjct: 717 EGDQE 721



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 158/383 (41%), Gaps = 33/383 (8%)

Query: 56  LLDMDKVYHA----RFFNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMS 100
           LLDM  VY      R +NV      +  A    K+VPN           PT+ TF ++M 
Sbjct: 169 LLDMRGVYSCEPTFRSYNVVLD---VLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMK 225

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK--------P 152
                 + + A  +L+ +   G   +  +Y TLI    K G+V+ + + ++        P
Sbjct: 226 ALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIP 285

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D   FN  I    +   +  A  ++  M   +    P+  T G LM      G+VD AR 
Sbjct: 286 DVNTFNDAIHGLCKMLRIHEAAKLVDRM--LLRGFTPNSFTYGVLMHGLCRMGKVDEARM 343

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV-YDDMTKKGVIPDEVFLSALIDFA 271
           +   +   N+     ++   IN     G  + A +V ++ M   G  PD    + LI   
Sbjct: 344 LLNKVPNPNVV----LFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGL 399

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G + +A E++ E + +G    +I+Y+ L+         ++A  + + M    L    
Sbjct: 400 CKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNA 459

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
              N LI+ALC  +++   + +  DM S G  P+  T++ L+    + +  E  L L   
Sbjct: 460 VGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQD 519

Query: 392 AKEDGVIPNLVMFKCIIGMCSRR 414
              +GVI N + +  +I    RR
Sbjct: 520 MLLEGVIANTITYNTLIHAFLRR 542



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 141/326 (43%), Gaps = 27/326 (8%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + + P    F  ++ A      VD A  +L +M    H   P+ I    L+ A    G+V
Sbjct: 211 KGISPTVYTFGVVMKALCLVNEVDSACALLKDMTR--HGCVPNAIVYQTLIHALXKVGRV 268

Query: 208 DRAREVYKMIHKYNIKG-TPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           +   EV K++ +  + G  P+V T   AI+   +      A  + D M  +G  P+    
Sbjct: 269 N---EVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTY 325

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
             L+      GKV+ A  +L +  N  +   ++  + + G  S  +  +    ++E M S
Sbjct: 326 GVLMHGLCRMGKVDEARMLLNKVPNPNV---VLFNTLINGYVSRGRLDEAKAVMHESMLS 382

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
           +   P + T N LI  LC    L    E++++M+  G  PN ITY+IL+    ++  +E 
Sbjct: 383 VGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEE 442

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN-----------EHVLSFNS--- 430
              +L +    G+  N V + C+I    +  +    LN             + +FNS   
Sbjct: 443 ARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIF 502

Query: 431 GRPQIENKWTSLALMVYREAIVAGTI 456
           G  ++ NK+   AL +Y++ ++ G I
Sbjct: 503 GLCKV-NKFEE-ALGLYQDMLLEGVI 526



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 9/223 (4%)

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           +VY + I+     G+++   ++   M ++G++  E     ++   G AG    A  +L +
Sbjct: 112 DVYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLD 171

Query: 287 AKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
            +          SY+ ++         +    ++  M S  + PTV T   ++ ALC  +
Sbjct: 172 MRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVN 231

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           ++     +L DM   G  PN I Y  L+ A  +   V   L LL +    G IP++  F 
Sbjct: 232 EVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFN 291

Query: 406 -CIIGMCS--RRYEKARTLNEHVLSFNSGRPQIENKWTSLALM 445
             I G+C   R +E A+ ++  +L     R    N +T   LM
Sbjct: 292 DAIHGLCKMLRIHEAAKLVDRMLL-----RGFTPNSFTYGVLM 329


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 174/388 (44%), Gaps = 26/388 (6%)

Query: 43  ECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           E   L ++M ++G+    L  +K+ H     +CK +  ++E+ + F  V      P L T
Sbjct: 199 EAYHLFDEMLKQGICPDILTFNKLIHV----LCK-KGNVQESEKLFSKVMKRGVCPNLFT 253

Query: 95  FNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSGKVDA------- 145
           FN+ +  +C      E A ++L  +   GL  D   Y TLI   C  S  V+A       
Sbjct: 254 FNIFIQGLCRKGAIDEAA-RLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKM 312

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           +   V+P+   +N +I    ++G +  A  +L +  A      PD  T  +L+    N G
Sbjct: 313 VNSGVEPNEFTYNTIINGFCKAGMMQNADKILRD--AMFKGFIPDEFTYSSLINGLCNDG 370

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            ++RA  V+    +   K +  +Y   +   S+ G    A  +  DM + G  PD    +
Sbjct: 371 DMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYN 430

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            +++     G +  A  IL +A  +G    I ++++L+      +N  KA+E+ + M S 
Sbjct: 431 LVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSH 490

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + P V T N L+  LC   +L   ++    M   G  PN ITY+IL+ +  +   V   
Sbjct: 491 GITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEA 550

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCS 412
           + L  + K  G+ P++V    +I G+CS
Sbjct: 551 MELFKEMKTRGLTPDIVTLCTLICGLCS 578



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 108/492 (21%), Positives = 196/492 (39%), Gaps = 80/492 (16%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N+LI    ++G + E   L   + ++G+      ++     +C+ + AI EA R  + 
Sbjct: 218 TFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCR-KGAIDEAARLLES 276

Query: 87  VPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + +    P + ++N L+   C  SK  E    + ++V  +G++ +   Y T+I    K+G
Sbjct: 277 IVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVN-SGVEPNEFTYNTIINGFCKAG 335

Query: 142 KV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            +        DAMF+   PD   +++LI      G ++RA  V  E  A         I 
Sbjct: 336 MMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYE--AMEKGFKHSIIL 393

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+K  +  G V +A ++ K + ++        Y + +N   + G    A  + +D  
Sbjct: 394 YNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAI 453

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            KG IPD    + LID       ++ A EIL    + GI+  +I+Y++L+     A+   
Sbjct: 454 AKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLD 513

Query: 314 -----------------------------------KALELYEHMKSIKLKPTVSTMNALI 338
                                              +A+EL++ MK+  L P + T+  LI
Sbjct: 514 NVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLI 573

Query: 339 TALCDGDQLPKTMEVLSDM-KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
             LC   +L K  E+   + K      +T  ++I++ A   K +V +   L  +      
Sbjct: 574 CGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDC 633

Query: 398 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 457
            P+   ++ +I      Y K   ++                   LA     E I  G +P
Sbjct: 634 APDNYTYRVMID----SYCKTGNID-------------------LAHTFLLENISKGLVP 670

Query: 458 TVEVVSKVLGCL 469
           +     KVL CL
Sbjct: 671 SFTTCGKVLNCL 682



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 19/316 (6%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +  +I   G  G  +   DVLAEM   V     + + IG +M+     G+V  A  V++ 
Sbjct: 43  YKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIG-IMRDYGRKGKVQEAVNVFER 101

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           +  Y+ + + + Y   +N   + G +  A  VY  M   G+ PD    +  +      G+
Sbjct: 102 MDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGR 161

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
             AA  +L     QG     +SY +++          +A  L++ M    + P + T N 
Sbjct: 162 PTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNK 221

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           LI  LC    + ++ ++ S +   G+CPN  T++I +    RK  ++    LL     +G
Sbjct: 222 LIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEG 281

Query: 397 VIPNLVMFKCII-GMC--SRRYEKARTLNEHVLSFNSG-RPQ------IENKWTSLALM- 445
           + P+++ +  +I G C  S+  E    L++ V   NSG  P       I N +    +M 
Sbjct: 282 LTPDVISYNTLICGFCKHSKLVEAECYLHKMV---NSGVEPNEFTYNTIINGFCKAGMMQ 338

Query: 446 ----VYREAIVAGTIP 457
               + R+A+  G IP
Sbjct: 339 NADKILRDAMFKGFIP 354



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 104/253 (41%), Gaps = 24/253 (9%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           + ++N LI    +Q  + + I++L+ M   G+      Y+     +CK++K       F 
Sbjct: 461 IFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFK 520

Query: 85  KLVP---NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            ++     P + T+N+L+ S C   K SE A ++ + ++  GL  D     TLI     +
Sbjct: 521 AMLEKGCTPNIITYNILIESFCKDRKVSE-AMELFKEMKTRGLTPDIVTLCTLICGLCSN 579

Query: 141 GKVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           G++D  +E                +FN +I A      V  A  +  +M        PD+
Sbjct: 580 GELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGS--DCAPDN 637

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVY 249
            T   ++ +    G +D A     ++   +    P   T    +NC   T     A  + 
Sbjct: 638 YTYRVMIDSYCKTGNIDLAHTF--LLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVII 695

Query: 250 DDMTKKGVIPDEV 262
           + M + G++P+EV
Sbjct: 696 NLMVQNGIVPEEV 708



 Score = 47.0 bits (110), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 83/195 (42%), Gaps = 3/195 (1%)

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGKVEA 279
            K T E Y   I      G +E    V  +M K     + + V++  + D+ G  GKV+ 
Sbjct: 36  FKHTLETYKCMIEKLGLHGKFEAMEDVLAEMRKNVDSKMLEGVYIGIMRDY-GRKGKVQE 94

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A  + +          + SY+++M        + +A ++Y  MK I + P V T    + 
Sbjct: 95  AVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMK 154

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
           + C   +    + +L++M   G   N ++Y  ++    +++       L  +  + G+ P
Sbjct: 155 SFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICP 214

Query: 400 NLVMFKCIIGMCSRR 414
           +++ F  +I +  ++
Sbjct: 215 DILTFNKLIHVLCKK 229


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 99/385 (25%), Positives = 169/385 (43%), Gaps = 38/385 (9%)

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQV 114
           ++KV  A F           +AF+  KL+      P  ST++ +++    +   E AF +
Sbjct: 418 LNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLL 477

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQ 166
            + ++  G+  D   YT LI +  K G ++   + F+ ++     P  V + AL+ A  +
Sbjct: 478 FQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLK 537

Query: 167 SGAVDRAFDVLAEMNAEVHPVD----PDHITIGALMKACANAGQVDRAREVY-KMIHKYN 221
           +  V +A D+   M      VD    P+ IT  AL+     AG+  +A EVY KMI   +
Sbjct: 538 TKQVPQASDIFHRM------VDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSD 591

Query: 222 IKGTPEVY------TIAINCCSQTGDWEFACSVY---------DDMTKKGVIPDEVFLSA 266
             G+   +      +IA N  +     +  C  +         D M+  G  P+ +   A
Sbjct: 592 NVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDA 651

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LID     GK++ A E+       G    + +Y+SL+ A    +    A+++   M    
Sbjct: 652 LIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESS 711

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
             P V T  A+I  LC   +  K +++LS M+  G  PN +TY+ L+    +   V++ L
Sbjct: 712 CTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSL 771

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMC 411
            L +Q    G  PN V ++ +I  C
Sbjct: 772 QLFTQMITQGCAPNYVTYRVLINHC 796



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 181/457 (39%), Gaps = 50/457 (10%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFE 148
           ++T N    +C   K  + AFQ+++L+   G   D   Y+ +IT   ++ KV+    +F+
Sbjct: 421 VNTANFARCLCGMGK-FDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQ 479

Query: 149 NVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            +K     PD   +  LI +  + G +++A     EM  E     P  +T  AL+ A   
Sbjct: 480 EMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEM--ESVGCSPSVVTYTALLHAYLK 537

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT---------- 253
             QV +A +++  +           Y+  ++   + G+ + AC VY  M           
Sbjct: 538 TKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDF 597

Query: 254 ------KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
                    + P+ V   ALID    A KV  A E+L    + G     I Y +L+    
Sbjct: 598 YFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFC 657

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                  A E++  M      PTV T  +LI A+    +L   ++VLS M      PN +
Sbjct: 658 KVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVV 717

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 427
           TY+ ++    R  + +  L LLS  ++ G  PN+V +  +I    +              
Sbjct: 718 TYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGK-------------- 763

Query: 428 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 487
             SG+         ++L ++ + I  G  P       ++         D    L+  +  
Sbjct: 764 --SGK-------VDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQ 814

Query: 488 SADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIV 524
           +         CS++ GF +    +  LLEE  S G+V
Sbjct: 815 TYWPKYVQGYCSVVQGFSKKFIASLGLLEELESHGMV 851



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 80/386 (20%), Positives = 167/386 (43%), Gaps = 27/386 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L   G+  +   +++ M RKG +     Y      +C++ K +++AF  F+ + +    P
Sbjct: 430 LCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMK-VEKAFLLFQEMKSVGVIP 488

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMF 147
            + T+ +L+         E A      ++  G       YT L+    K+ +V     +F
Sbjct: 489 DVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIF 548

Query: 148 ENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEM--------------NAEVHPVD 188
             +      P+ + ++AL+    ++G   +A +V A+M                    + 
Sbjct: 549 HRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIA 608

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ +T GAL+     A +V  A+E+  ++     +    +Y   I+   + G  + A  V
Sbjct: 609 PNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEV 668

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +  M+K G +P     ++LID      +++ A ++L +      +  +++Y++++     
Sbjct: 669 FFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCR 728

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
               QKAL+L   M+     P V T  +LI  L    ++  ++++ + M + G  PN +T
Sbjct: 729 IGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVT 788

Query: 369 YSILLVACERKDDVEVGLMLLSQAKE 394
           Y +L+  C     ++    LLS+ K+
Sbjct: 789 YRVLINHCCAAGLLDEAHSLLSEMKQ 814



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 162/403 (40%), Gaps = 60/403 (14%)

Query: 13  YPNGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFF 68
           Y  G+H +    ++  + +Y  LI    +  ++ +  +LL+ M   G      +Y A   
Sbjct: 598 YFEGEHTD---SIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALID 654

Query: 69  NVCKSQK---AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
             CK  K   A +  FR  K    PT+ T+  L+      +  + A +VL  + E+    
Sbjct: 655 GFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTP 714

Query: 126 DCKLYTTLIT------TCAKSGKVDAMFEN--VKPDRVVFNALITACGQSGAVDRAFDVL 177
           +   YT +I        C K+ K+ +M E     P+ V + +LI   G+SG VD +  + 
Sbjct: 715 NVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLF 774

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            +M  +     P+++T   L+  C  AG +D A  +   + +       + Y        
Sbjct: 775 TQMITQ--GCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGY-------- 824

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
                   CSV    +KK +                     A+  +L+E ++ G+     
Sbjct: 825 --------CSVVQGFSKKFI---------------------ASLGLLEELESHGMVSIAP 855

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS---TMNALITALCDGDQLPKTMEVL 354
            Y  L+ + S A   +KALEL++ M  +     ++   T  +LI ALC   QL K  E+ 
Sbjct: 856 VYGLLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKAFELY 915

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           S++   G+ P    +  L+    + +     L L     ++GV
Sbjct: 916 SEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEGV 958



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/384 (20%), Positives = 149/384 (38%), Gaps = 49/384 (12%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           KA++E  R       P+ +T+N L+ V A++   +  F+V + + E G   D        
Sbjct: 190 KALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFA 249

Query: 135 TTCAKSGK-VDAMF----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
               K G+  DA+     E+ K D V+   +I+   ++   D A   L  M    +   P
Sbjct: 250 QALCKEGRWSDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRC--NSCIP 307

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA---- 245
           + +T   L+       Q+   + +  M+        P ++   ++      D+ +A    
Sbjct: 308 NVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLL 367

Query: 246 ----------------------CS---------------VYDDMTKKGVIPDEVFLSALI 268
                                 CS               VY++M     + ++V  +   
Sbjct: 368 NRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFA 427

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                 GK + AF+I++    +G      +YS ++     A   +KA  L++ MKS+ + 
Sbjct: 428 RCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVI 487

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P V T   LI + C    + +      +M+S+G  P+ +TY+ LL A  +   V     +
Sbjct: 488 PDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDI 547

Query: 389 LSQAKEDGVIPNLVMFKCII-GMC 411
             +  + G  PN + +  ++ G+C
Sbjct: 548 FHRMVDAGCAPNTITYSALVDGLC 571



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 88/410 (21%), Positives = 162/410 (39%), Gaps = 37/410 (9%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           LH+Y   ++  ++ +  D+   M   G       Y A    +CK+ ++ K    + K++ 
Sbjct: 532 LHAY---LKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIG 588

Query: 89  N-------------------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
                               P + T+  L+     +     A ++L ++   G + +  +
Sbjct: 589 TSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHII 648

Query: 130 YTTLITTCAKSGKVD----AMFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y  LI    K GK+D      F   K    P    + +LI A  +   +D A  VL++M 
Sbjct: 649 YDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQML 708

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
                  P+ +T  A++      G+  +A ++  M+ K         YT  I+   ++G 
Sbjct: 709 ES--SCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGK 766

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            + +  ++  M  +G  P+ V    LI+    AG ++ A  +L E K       +  Y S
Sbjct: 767 VDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCS 826

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           ++   S  K +  +L L E ++S  +         LI +     +L K +E+  +M  + 
Sbjct: 827 VVQGFS--KKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVS 884

Query: 362 LCPNTI---TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              N     TY+ L+ A      +E    L S+    GV+P L  F C+I
Sbjct: 885 SSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLI 934



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 105/510 (20%), Positives = 191/510 (37%), Gaps = 106/510 (20%)

Query: 64  HARFFN------VCKSQKAIKEAFRFF-----KLVPNPTLSTFNMLMSVCASSKDSEGAF 112
           H  F N      V +S +  +   RFF     ++  + T + +N L  V      +    
Sbjct: 98  HRDFLNDAVVVAVLRSVRTPELCVRFFLWAERQVGYSHTGACYNALAEVLHFDDRARTTE 157

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV--------KPDRVVFNALITAC 164
           ++LR + E   +   +L   ++  C + G      E +        +P    +NAL+   
Sbjct: 158 RLLREIGEDDREVLGRLLNVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVL 217

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
             +G +D  F V  EM+        D  T+G   +A    G   R  +   MI + + K 
Sbjct: 218 ATAGQMDMGFRVQKEMSE--LGFCTDKFTVGCFAQALCKEG---RWSDALVMIEREDFKL 272

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF--E 282
              + T  I+   +   ++ A S    M     IP+ V    L+  AG   K +  +   
Sbjct: 273 DTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLL--AGFLKKKQLGWCKR 330

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           I+    N+G +     ++SL+ +  NA+++  A +L   M      P     N  I ++C
Sbjct: 331 IISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSIC 390

Query: 343 DGDQLP-----------------------------------------KTMEVLSDMKSLG 361
            G++LP                                         K  +++  M   G
Sbjct: 391 SGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKG 450

Query: 362 LCPNTITYS-ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK------CIIGMCSRR 414
             P+T TYS ++   CE    VE   +L  + K  GVIP++  +       C +G+    
Sbjct: 451 FVPDTSTYSKVITFLCEAM-KVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGL---- 505

Query: 415 YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN 474
            E+AR+  +          ++E+   S +++ Y             ++   L   Q+P  
Sbjct: 506 IEQARSWFD----------EMESVGCSPSVVTY-----------TALLHAYLKTKQVPQA 544

Query: 475 ADIRERLVENLGVSADALKRSNLCSLIDGF 504
           +DI  R+V+  G + + +  S   +L+DG 
Sbjct: 545 SDIFHRMVDA-GCAPNTITYS---ALVDGL 570



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 131/332 (39%), Gaps = 69/332 (20%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFF 84
           Y+ LI    + G++    ++   M + G L     Y +    + K ++   AIK   +  
Sbjct: 649 YDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQML 708

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +    P + T+  ++       + + A ++L ++++ G   +   YT+LI    KSGKVD
Sbjct: 709 ESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVD 768

Query: 145 A--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA-------------- 182
                    + +   P+ V +  LI  C  +G +D A  +L+EM                
Sbjct: 769 MSLQLFTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVV 828

Query: 183 -----------------EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK----YN 221
                            E H +       G L+ + + AG++++A E++K + +     N
Sbjct: 829 QGFSKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEMMEVSSSLN 888

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           I  + + YT  I         E A  +Y ++T+KGV+P+   LSA I       KV    
Sbjct: 889 IT-SKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPE---LSAFICLIKGLIKVNKWN 944

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           E LQ           + YS     C    NWQ
Sbjct: 945 EALQ-----------LCYS----MCDEGVNWQ 961



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 78/377 (20%), Positives = 141/377 (37%), Gaps = 41/377 (10%)

Query: 200 ACANA-GQV----DRAREVYKMIHKY---NIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           AC NA  +V    DRAR   +++ +    + +    +  + +  C + G W  A      
Sbjct: 138 ACYNALAEVLHFDDRARTTERLLREIGEDDREVLGRLLNVIVRKCCRHGAWAKALEELGR 197

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           +   G  P     +AL+     AG+++  F + +E    G      +      A      
Sbjct: 198 LKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGR 257

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           W  AL + E  +  KL   + T   +I+ L +     + +  L  M+     PN +TY  
Sbjct: 258 WSDALVMIER-EDFKLDTVLCTQ--MISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRT 314

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL-------- 421
           LL    +K  +     ++S    +G  PN  +F  ++   C +R Y  A  L        
Sbjct: 315 LLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCG 374

Query: 422 --------NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPY 473
                   N  + S  SG         +LA  VY E + +  +      +    CL    
Sbjct: 375 CPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMG 434

Query: 474 NADIRERLVENL---GVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV--- 527
             D   ++++ +   G   D    S + + +    + + +AF L +E  S G++P V   
Sbjct: 435 KFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAMKVE-KAFLLFQEMKSVGVIPDVYTY 493

Query: 528 -----SFKEIPVVVDAR 539
                SF ++ ++  AR
Sbjct: 494 TILIDSFCKVGLIEQAR 510


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 169/391 (43%), Gaps = 18/391 (4%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RFFKLVPNPTLS 93
           +  R    I L E M+  G+  +    +     VC S +  + +    +  KL   P L 
Sbjct: 95  KMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLV 154

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           TF  L++        E A  +   +   G K +   YTTLI    K+  ++   E     
Sbjct: 155 TFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQM 214

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                +P+ V +NAL+T   + G    A  +L +M      ++P+ IT  AL+ A    G
Sbjct: 215 GTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKR--RIEPNVITFTALIDAFVKVG 272

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           ++  A+E+Y ++ + ++   P+V+T    IN     G  + A  ++  M + G  P+EV 
Sbjct: 273 KLMEAKELYNVMIQMSV--YPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVI 330

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + LI     + +VE   +I  E   +G+    I+Y+ L+           A E++  M 
Sbjct: 331 YTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMS 390

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           S +  P + T N L+  LC   ++ K + +   M+   +  N +TY+I++    +   VE
Sbjct: 391 SRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVE 450

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
               L       G+ PN++ +  +I G C R
Sbjct: 451 DAFDLFCSLFSKGMKPNVITYTTMISGFCRR 481



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 155/328 (47%), Gaps = 18/328 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P + T+  L+     ++    A ++   +   G + +   Y  L+T   + G+       
Sbjct: 186 PNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWL 245

Query: 144 --DAMFENVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALM 198
             D M   ++P+ + F ALI A  + G +  A   ++V+ +M+     V PD  T G+L+
Sbjct: 246 LRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMS-----VYPDVFTYGSLI 300

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                 G +D AR+++ ++ +        +YT  I+   ++   E    ++ +M++KGV+
Sbjct: 301 NGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVV 360

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALE 317
            + +  + LI      G+ + A E+  +  ++     I +Y+ L+ G C N K  +KAL 
Sbjct: 361 ANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGK-VEKALM 419

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           ++E+M+  ++   + T   +I  +C   ++    ++   + S G+ PN ITY+ ++    
Sbjct: 420 IFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFC 479

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           R+  +     L  + KEDG +PN  ++K
Sbjct: 480 RRGLIHEADSLFKKMKEDGFLPNESVYK 507


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 171/392 (43%), Gaps = 24/392 (6%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVC---------KSQKAIKEAFRFFKLVPNP 90
           RISE   LL  M R G       Y      +C         K  + +      F +   P
Sbjct: 177 RISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKP 236

Query: 91  TLSTF-NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
            L  +  ++ S+C      +G    L + +  G+  D   Y+++I     +G+ +    +
Sbjct: 237 NLVCYCTIIDSLCKDGLIDKGKELFLEM-KGRGISPDVVAYSSIIHGMCHTGRWEGAKGL 295

Query: 147 F-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F     E V P+ V FN LI A  ++G ++ A  +L  M        PD  T   L+   
Sbjct: 296 FNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGE--SPDTFTYNTLIDGF 353

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G++D AR+++  +    I+     Y + IN   ++G    A  +Y +M  K ++P  
Sbjct: 354 CLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTV 413

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
           +  + L+      GKV  A+ +  E K   ++    +Y+ L+ G C N  +  +A+EL+ 
Sbjct: 414 ITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKN-NHLSEAMELFH 472

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           ++++   +P++   N LI  LC   ++    E+ + +   GL PN ITY++++    +  
Sbjct: 473 YLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSG 532

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            +E    L    +E G  PNLV F  ++ G C
Sbjct: 533 QLENAKDLFLGMEEKGCAPNLVTFNTLMRGFC 564



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 155/354 (43%), Gaps = 17/354 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           + L + G I +  +L  +M+ +G+      Y +    +C + +       F ++V    +
Sbjct: 246 DSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVH 305

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P + TFN+L+     +   E A  +L+L+ + G   D   Y TLI      G++D    +
Sbjct: 306 PNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDL 365

Query: 147 F-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F     + ++ D V +N LI    +SG +  A  +  EM  +   + P  IT   L+   
Sbjct: 366 FVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCK--EIMPTVITYNTLLTGL 423

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              G+V  A  ++  +  +++  TPE   Y I ++   +      A  ++  +      P
Sbjct: 424 FREGKVRDAWNLFGEMKVHDL--TPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQP 481

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
                + LID    A K+E A E+     ++G+   +I+Y+ ++     +   + A +L+
Sbjct: 482 SIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLF 541

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             M+     P + T N L+   C  D++ K +E+L +M      P+  T SI++
Sbjct: 542 LGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVV 595



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 146/364 (40%), Gaps = 42/364 (11%)

Query: 71  CKSQKAIK-EAFRFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           CKS    + EAF  F     + P P +S+FN L+   A  K     F V+ L +   L  
Sbjct: 66  CKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKR---YFDVISLYKRMSLIG 122

Query: 126 DCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
                                   + PD +  N LI        VD    VL EM    H
Sbjct: 123 ------------------------LAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGH 158

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
              P+ +T  +L+K      ++  A  + + + +   +     Y   +N    TG+   A
Sbjct: 159 --SPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLA 216

Query: 246 CSVYDDMTKKG------VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
             ++++M          + P+ V    +ID     G ++   E+  E K +GIS  +++Y
Sbjct: 217 VKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAY 276

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           SS++    +   W+ A  L+  M    + P V T N LI ALC   ++ +   +L  M  
Sbjct: 277 SSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQ 336

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEK 417
            G  P+T TY+ L+     +  ++    L    +  G+  + V +  +I G C S R  +
Sbjct: 337 RGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVE 396

Query: 418 ARTL 421
           A+ L
Sbjct: 397 AKKL 400



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 113/248 (45%), Gaps = 11/248 (4%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFAC 246
           PD   +   +K+   +G + R+       H  +++ TP +  +   +   ++   +    
Sbjct: 53  PDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVI 112

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           S+Y  M+  G+ PD + L+ LI+   +  KV+    +L E   +G S   ++++SL+   
Sbjct: 113 SLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGL 172

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC-DGDQLPKTM---EVLSDMKSLGL 362
                  +A  L   M  +  +P V T   L+  LC  G+ +       E+L+     G+
Sbjct: 173 CLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGV 232

Query: 363 C--PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA 418
              PN + Y  ++ +  +   ++ G  L  + K  G+ P++V +  II GMC + R+E A
Sbjct: 233 TIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGA 292

Query: 419 RTL-NEHV 425
           + L NE V
Sbjct: 293 KGLFNEMV 300



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
           +GH  + EA F +     +   +  I S+++L+GA +  K +   + LY+ M  I L P 
Sbjct: 68  SGHIKRSEA-FSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPD 126

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
             T+N LI   C+ +++   + VL +M   G  PNT+T++ L+        +     LL 
Sbjct: 127 FITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLR 186

Query: 391 QAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSG 431
           +    G  PN+V +  ++ G+C +     A  L+E +L+ N G
Sbjct: 187 KMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGG 229


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 92/399 (23%), Positives = 184/399 (46%), Gaps = 18/399 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+G + E  +++  M  KGL      Y+A    +CK  + ++    F ++
Sbjct: 222 TYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEM 281

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +    +P  +T+N L+     + +   A  +   +   G+  D   +++LI   +++G +
Sbjct: 282 LSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHL 341

Query: 144 DA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D     F ++K     PD V++  LI    ++G +  A ++  +M  +   +D   +   
Sbjct: 342 DQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDV--VAYN 399

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++        +  A  ++  + +  +      +T  I+   + G+   A S++  MT+K
Sbjct: 400 TILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQK 459

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + PD V  + LID      ++E A E+  E  ++ I    ISY+ L+    N     +A
Sbjct: 460 NIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEA 519

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             L++ M    +KPT+ T N +I   C    L K  E L  M S G+ P++ITY+ L+  
Sbjct: 520 FRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLING 579

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
             + + ++    L+++ +  G+ P++V +  I+ G C +
Sbjct: 580 FVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQ 618



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 102/453 (22%), Positives = 194/453 (42%), Gaps = 53/453 (11%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           T N++++        +     L  +++ G+ AD   Y TLI    + G +   FE     
Sbjct: 187 TLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSM 246

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM-KACANA 204
               +KP    +NA+I    + G   RA  V  EM +    + PD  T   L+ ++C N 
Sbjct: 247 SGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLS--IGLSPDTTTYNTLLVESCRNN 304

Query: 205 GQVDRAREVYK-MIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             ++ A++++  M+H+     +P++ + +  I   S+ G  + A   + DM   G++PD 
Sbjct: 305 NFLE-AKDIFSDMLHR---GVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDN 360

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LI+     G +  A EI  +   QG ++ +++Y++++      K    A  L++ 
Sbjct: 361 VIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDE 420

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    + P   T   LI   C    + K + +   M    + P+ +TY+IL+    +  +
Sbjct: 421 MVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTE 480

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWT 440
           +E    L ++     + PN + +  ++ G C                 N G       + 
Sbjct: 481 MEKANELWNEMISRKIFPNHISYAILVNGYC-----------------NLG-------FV 516

Query: 441 SLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSN 496
           S A  ++ E I  G  PT+   + V+        L    +   +++   GV  D++  + 
Sbjct: 517 SEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISE-GVGPDSITYN- 574

Query: 497 LCSLIDGF--GEYDPRAFSLLEEAASFGIVPCV 527
             +LI+GF  GEY  +AF L+ +  + G+ P V
Sbjct: 575 --TLINGFVKGEYMDKAFFLINKMETKGLQPDV 605



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 166/394 (42%), Gaps = 23/394 (5%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S    +YN L+    R     E  D+  DM  +G+   D +  +    V      + +A
Sbjct: 286 LSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGV-SPDLISFSSLIGVSSRNGHLDQA 344

Query: 81  FRFFK------LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
             +F+      LVP+  + T  ++   C +   SE A ++   + E G   D   Y T++
Sbjct: 345 LMYFRDMKTSGLVPDNVIYTI-LINGYCRNGMMSE-ALEIRDKMLEQGCALDVVAYNTIL 402

Query: 135 TTCAKS---GKVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               K       +A+F+      V PD   F  LI    + G + +A  +   M  +   
Sbjct: 403 NGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQK--N 460

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + PD +T   L+       ++++A E++  +    I      Y I +N     G    A 
Sbjct: 461 IKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAF 520

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            ++D+M +KG+ P  V  + +I     +G +  A E L +  ++G+    I+Y++L+   
Sbjct: 521 RLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGF 580

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
              +   KA  L   M++  L+P V T N ++   C   ++ +   +L  M   G+ P+ 
Sbjct: 581 VKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDR 640

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
            TY+ L+     +D+++       +  + G +P+
Sbjct: 641 STYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 162/349 (46%), Gaps = 47/349 (13%)

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS-------QTGDW 242
           D++    L+++   A +++   + +K++ +   KG    + ++IN C+       + G  
Sbjct: 114 DNLVFDLLIRSYVQARKLNEGTDTFKILRR---KG----FLVSINACNSLLGGLVKMGWV 166

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           + A  VY+++ + G+  +   L+ +++      K++     L + + +GI   I++Y++L
Sbjct: 167 DLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTL 226

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           + A        +A E+   M    LKPT+ T NA+I  LC   +  +   V ++M S+GL
Sbjct: 227 INAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGL 286

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
            P+T TY+ LLV   R ++      + S     GV P+L+ F  +IG+ SR        N
Sbjct: 287 SPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSR--------N 338

Query: 423 EHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIR 478
            H+                 ALM +R+   +G +P   + + ++        +    +IR
Sbjct: 339 GHL---------------DQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIR 383

Query: 479 ERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
           ++++E  G + D +  +   ++++G  +      A +L +E    G+VP
Sbjct: 384 DKMLEQ-GCALDVVAYN---TILNGLCKKKLLADANALFDEMVERGVVP 428



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 136/327 (41%), Gaps = 13/327 (3%)

Query: 95  FNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           F++L+ S   + K +EG     ++++  G         +L+    K G VD  +E     
Sbjct: 118 FDLLIRSYVQARKLNEGT-DTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEI 176

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               ++ +    N ++ A  +   +D     L +M  E   +  D +T   L+ A    G
Sbjct: 177 ARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDM--EQKGIFADIVTYNTLINAYCREG 234

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +  A EV   +    +K T   Y   IN   + G +  A  V+++M   G+ PD    +
Sbjct: 235 LLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYN 294

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+  +        A +I  +  ++G+S  +IS+SSL+G  S   +  +AL  +  MK+ 
Sbjct: 295 TLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTS 354

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            L P       LI   C    + + +E+   M   G   + + Y+ +L    +K  +   
Sbjct: 355 GLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADA 414

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMC 411
             L  +  E GV+P+   F  +I G C
Sbjct: 415 NALFDEMVERGVVPDFCTFTTLIHGHC 441



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 10/161 (6%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMF-----ENVKPDRVVFNALIT 162
           AF++   +   G+K       T+I    +SG   K D        E V PD + +N LI 
Sbjct: 519 AFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLIN 578

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
              +   +D+AF ++ +M  E   + PD +T   ++      G++  A  + + + +  I
Sbjct: 579 GFVKGEYMDKAFFLINKM--ETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGI 636

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
                 YT  IN      + + A   +D+M ++G +PD+ F
Sbjct: 637 DPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGFVPDDDF 677


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 158/361 (43%), Gaps = 18/361 (4%)

Query: 69  NVCKSQKAIKEAFRFFKLV-----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           + C   + +  AF FF  +         +   ++L  +C + +  E    +   + E G 
Sbjct: 111 DCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDVLFHRMPELGC 170

Query: 124 KADCKLYTTLITTCAKSGK----VDAMFENVKP------DRVVFNALITACGQSGAVDRA 173
             D   Y+T++ +    G+    +D +   VK       + VV++ ++    + G V  A
Sbjct: 171 VPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVGEA 230

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
            D+  EM  +  P  P+ +T  +++ A   A  VD+A+ + + +    ++     Y   I
Sbjct: 231 CDLFHEMTQQGVP--PNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLI 288

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           +  S  G W+ A  ++ +MT +GVIP+ V  S  + F    G++E A E       +G  
Sbjct: 289 HGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHK 348

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
           + IISYS+L+   + A        L+  M    + P     N L+        + + M +
Sbjct: 349 LNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFI 408

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
             DM+  GL P+ +TY  ++ A  R   ++  +   +   + GV PN  +++C+I G C+
Sbjct: 409 FEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCT 468

Query: 413 R 413
            
Sbjct: 469 H 469



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/444 (20%), Positives = 191/444 (43%), Gaps = 43/444 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L ++G++ E  DL  +M ++G+      Y++    +CK++   K      ++V N   P 
Sbjct: 221 LFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPD 280

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------D 144
             T+N L+   ++    + A ++ + +   G+  +    +T +    K G++       D
Sbjct: 281 NVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFD 340

Query: 145 AMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           +M  +  K + + ++ L+     +G +    ++   M  +   + P+      L+   A 
Sbjct: 341 SMLAKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRD--GIVPNQHVFNILVNGYAK 398

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G V  A  +++ + K  +      Y   I+   + G  + A   ++ M  KGV P+   
Sbjct: 399 CGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAV 458

Query: 264 LSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
              LI  F  H   V+A  E++ E +N+G+   I+S++SL+          +A  +++ +
Sbjct: 459 YQCLIQGFCTHGDLVKAE-ELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMI 517

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
                K  V+   +LI   C   ++ +   V   M S+G+ P+ +TY  L+  C +   +
Sbjct: 518 IRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRI 577

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 441
           + GL+L  +    GV P    +  I+ G+                 F++GR       T+
Sbjct: 578 DDGLILFRELLHKGVKPTTFTYGIILDGL-----------------FHAGR-------TA 613

Query: 442 LALMVYREAIVAG---TIPTVEVV 462
            A  +++E I +G   TIPT  ++
Sbjct: 614 AAKEMFQEMIESGIAVTIPTYSIL 637



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/387 (21%), Positives = 160/387 (41%), Gaps = 54/387 (13%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H +N L+    + G + E + + EDM+++GL      Y A     C+         +F  
Sbjct: 387 HVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNH 446

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           ++     P  + +  L+    +  D   A +++  ++  GL      + +LI    K G+
Sbjct: 447 MIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGR 506

Query: 143 V---DAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           V     +F+ +     K D  +F +LI      G +  AF V   M +    ++PD +T 
Sbjct: 507 VFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSV--GIEPDIVTY 564

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           G L+  C   G++D    +++                                   ++  
Sbjct: 565 GTLVNGCCKNGRIDDGLILFR-----------------------------------ELLH 589

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQ 313
           KGV P       ++D   HAG+  AA E+ QE    GI+V I +YS L+ G C N    +
Sbjct: 590 KGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRN-NCTE 648

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A+ +++ + ++ +K  +  +N +I+ +    +  +   + + +   GL P   TY+I++
Sbjct: 649 EAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMM 708

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPN 400
               ++  VE    + S   + G+ P 
Sbjct: 709 ENLIKEGSVEEAEGVFSVMLKSGLSPT 735



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 80/379 (21%), Positives = 159/379 (41%), Gaps = 19/379 (5%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV   L   +   R G + + +D    M  KG+     VY       C     +K     
Sbjct: 420 DVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELV 479

Query: 84  FKLVP---NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           +++      P + +F  L++ +C   +  E A ++  ++   G KAD  ++T+LI     
Sbjct: 480 YEIRNKGLGPCILSFASLINHLCKEGRVFE-AQRIFDMIIRTGEKADVNIFTSLIDGYCL 538

Query: 140 SGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPD 190
            GK+   F          ++PD V +  L+  C ++G +D    +  E+   +H  V P 
Sbjct: 539 IGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFREL---LHKGVKPT 595

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
             T G ++    +AG+   A+E+++ + +  I  T   Y+I +    +    E A +V+ 
Sbjct: 596 TFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQ 655

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            +    V  D V L+ +I     A + E A  +     + G+   + +Y+ +M       
Sbjct: 656 KLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEG 715

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS--DMKSLGLCPNTIT 368
           + ++A  ++  M    L PT   +N ++  L +  ++ K    +   D KS+    +T +
Sbjct: 716 SVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKAGIYMCRVDGKSILFEASTAS 775

Query: 369 YSILLVACERKDDVEVGLM 387
             + L +C+ K    + L+
Sbjct: 776 MLLSLFSCKGKHREHLNLL 794



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 96/244 (39%), Gaps = 42/244 (17%)

Query: 226 PEVYT--IAINCCSQTGDWE-----FAC-------------------------------S 247
           P VYT  I I+CC +    +     F C                                
Sbjct: 101 PTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVDV 160

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--GISVGIISYSSLMGA 305
           ++  M + G +PD +  S ++      G+ + A +IL+ A  Q  G    ++ YS+++  
Sbjct: 161 LFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHG 220

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
                   +A +L+  M    + P V T N++I ALC    + K   +L  M   G+ P+
Sbjct: 221 LFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPD 280

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNE 423
            +TY+ L+         +  + +  +    GVIPN V     +    +  R E+AR   +
Sbjct: 281 NVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFD 340

Query: 424 HVLS 427
            +L+
Sbjct: 341 SMLA 344



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 104/228 (45%), Gaps = 17/228 (7%)

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
           +P     S LID    A +++ AF        QG+   +I  SSL+    +AK   +A++
Sbjct: 100 LPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCDAKRTDEAVD 159

Query: 318 -LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS-DMKSLGLCP-NTITYSILLV 374
            L+  M  +   P   + + ++ ++CD  +    +++L   +K  G CP N + YS ++ 
Sbjct: 160 VLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVH 219

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGR 432
              ++  V     L  +  + GV PN+V +  +I  +C +R  +KA+ +   ++  N  +
Sbjct: 220 GLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVG-NGVQ 278

Query: 433 PQ------IENKWTSL-----ALMVYREAIVAGTIPTVEVVSKVLGCL 469
           P       + + +++L     A+ +++E    G IP     S  +  L
Sbjct: 279 PDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFL 326


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 154/329 (46%), Gaps = 14/329 (4%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
           P +  FN+LM  +C   K +E    +   + + GL+     + TLI    KSG +D    
Sbjct: 223 PDVCKFNVLMHRLCKEHKINEAQL-LFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFR 281

Query: 146 ----MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
               M EN V PD   ++ LI    + G +D A  +  EM      + P+ +T   L+  
Sbjct: 282 LKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDR--GLVPNDVTFTTLING 339

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G+ D   E+Y+ + +  +K     Y   IN   + GD   A  +  +MT++G+ PD
Sbjct: 340 HCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPD 399

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 319
           +   + LID     G +E+A EI +E   +GI +  +++++L+ G C   +  +    L 
Sbjct: 400 KFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLR 459

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E +++  +KP  +T   +I   C    +    ++L +M+  G  P  +TY++LL    ++
Sbjct: 460 EMLEA-GIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQ 518

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             ++   MLL      GV+P+ + +  ++
Sbjct: 519 GQMKNANMLLDAMLNLGVVPDDITYNILL 547



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 169/394 (42%), Gaps = 24/394 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST-- 94
           R+G+ S        +E +G    + V+ +   N         +A + F+LV    L    
Sbjct: 132 RKGKNSASSVFTSVLEARGTHQSNLVF-SVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPF 190

Query: 95  ------FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
                 F+ LM +  +S     A+     + + G   D   +  L+    K  K++    
Sbjct: 191 HSCGYLFDRLMKLNLTSP----AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQL 246

Query: 146 MF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +F       ++P  V FN LI    +SG +D+ F +   M    + V PD  T   L+  
Sbjct: 247 LFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMME--NRVFPDVFTYSVLING 304

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               GQ+D A +++  +    +      +T  IN    TG  +    +Y  M +KGV PD
Sbjct: 305 LCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPD 364

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  + LI+     G +  A +++ E   +G+     +Y+ L+  C    + + ALE+ +
Sbjct: 365 VITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRK 424

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    ++       ALI+  C   Q+ +    L +M   G+ P+  TY++++    +K 
Sbjct: 425 EMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKG 484

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           DV+ G  LL + + DG +P +V +  ++ G+C +
Sbjct: 485 DVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQ 518



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 111/258 (43%), Gaps = 19/258 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---IKEAFRFFKLVPN 89
           N L ++G++ +   L  +M  +GL+  D  +       C + +A   ++   +  +    
Sbjct: 303 NGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVK 362

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T+N L++      D   A +++  + + GLK D   YT LI  C K G +++  E 
Sbjct: 363 PDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEI 422

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   ++ D V F ALI+   + G V  A   L EM      + PD  T   ++   
Sbjct: 423 RKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEA--GIKPDDATYTMVIHGF 480

Query: 202 ANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              G V      +K++ +    G  P V  Y + +N   + G  + A  + D M   GV+
Sbjct: 481 CKKGDVKTG---FKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVV 537

Query: 259 PDEVFLSALIDFAGHAGK 276
           PD++  + L++    A K
Sbjct: 538 PDDITYNILLERTLQAWK 555


>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Cucumis sativus]
          Length = 707

 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 172/406 (42%), Gaps = 24/406 (5%)

Query: 35  LIRQGRISECIDLLEDME-------RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           L + G I  C+ + + M+       R  + +M    HAR   + +++      F   K  
Sbjct: 4   LTQIGSIEHCVQVFDWMKNQRNYCARNDIYNMMIRLHARHNRIDQARGLF---FEMQKWR 60

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----- 142
             P + T+N L++    +     A  ++  +  A +      +  LI  C   G      
Sbjct: 61  CKPDVETYNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREAL 120

Query: 143 --VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                M +N V PD V  N +++A        +A      M      + PD  T+  ++ 
Sbjct: 121 RVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGT--NIRPDTTTLNIVIH 178

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGV 257
                 Q  +A E++  + +   +  P+V  +T  I+  S  G  E   +V+  M  +G+
Sbjct: 179 CLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFSTMLAEGI 238

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P+ V  +ALI      G  + AF +  E K  G    ++SY+SL+     ++   +A E
Sbjct: 239 KPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARARE 298

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           +++ MK  K KP + + NAL+ A      LP+ +++L +M+  G+ PN ++   LL AC 
Sbjct: 299 VFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACG 358

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 421
           R         +LS A+  G+  N +     IG  M    YEKA  L
Sbjct: 359 RFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINL 404



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 184/419 (43%), Gaps = 23/419 (5%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI      G   E + + + M   G+   D V H    +  KS     +A  +F+L
Sbjct: 102 TFNNLINACGSCGNWREALRVCKKMTDNGV-GPDLVTHNIVLSAYKSGAQYSKALSYFEL 160

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE--AGLKADCKLYTTLITTCAKS 140
           +      P  +T N+++      K    A ++   ++E  +  + D   +T++I   +  
Sbjct: 161 MKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVR 220

Query: 141 GKVD---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+++   A+F     E +KP+ V +NALI+A    G    AF V  EM        PD +
Sbjct: 221 GQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRS--GFCPDVV 278

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +  +L+     + Q  RAREV+ M+ +   K     Y   ++     G    A  +  +M
Sbjct: 279 SYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREM 338

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            + G+ P+ V +  L+   G  G+      +L  A+ +GI +  I+ +S +G+  N   +
Sbjct: 339 EQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEY 398

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +KA+ LY  M++   KP   T   LI+  C   +  + +    +M  L +  ++  YS +
Sbjct: 399 EKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSM 458

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM--CSRRYEKARTLNEHVLSFN 429
           + A  ++  +     L +  K  G  P+LV +  +I     S  +EK   L + + + N
Sbjct: 459 ICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANN 517



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 151/339 (44%), Gaps = 10/339 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDAM 146
           P+ STFN L++ C S  +   A +V + + + G+  D   +  +++   + A+  K  + 
Sbjct: 98  PSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSY 157

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE     N++PD    N +I    +     +A ++ + M  +     PD +T  +++   
Sbjct: 158 FELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLY 217

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           +  GQ++  + V+  +    IK     Y   I+  +  G  + A SV+D+M + G  PD 
Sbjct: 218 SVRGQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDV 277

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  ++LI   G + +   A E+    K       ++SY++LM A  +     +A+++   
Sbjct: 278 VSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILRE 337

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+   + P V ++  L+ A     Q      VLS  +  G+  NTI  +  + +     +
Sbjct: 338 MEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGE 397

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
            E  + L    +     P+ V F  +I  C R  +YE+A
Sbjct: 398 YEKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEA 436



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/437 (21%), Positives = 173/437 (39%), Gaps = 52/437 (11%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +   + SYN LI      G   E   + ++M+R G       Y +      +SQ+  
Sbjct: 235 AEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPA 294

Query: 78  K--EAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +  E F   K     P L ++N LM    S+     A  +LR +++ G+  +     TL+
Sbjct: 295 RAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLL 354

Query: 135 TTCAKSGK---VDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
             C + G+   +D++        +  + +  N+ I +    G  ++A ++   M  E   
Sbjct: 355 AACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSM--ENKT 412

Query: 187 VDPDHITIGALMKACANAGQVDRA---------------REVYK-MIHKYNIKGT----- 225
             PD +T   L+  C    + + A                E+Y  MI  Y+ +G      
Sbjct: 413 TKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAE 472

Query: 226 ------------PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
                       P++  YT  IN  S +  WE  C++Y +M    +  D +  SAL+   
Sbjct: 473 SLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAF 532

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
               +      + +  K +GI     ++  ++ ACS  ++W+KA +L   M+      ++
Sbjct: 533 NKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILRDWRKATDLINLMEPSFHLVSL 592

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T+N L+  L    +    +++     +LG   N  TYSILL            + +L  
Sbjct: 593 GTINHLLQFLGKSGKTEIMIKLFYRFVALGSSVNINTYSILLKNLLSAGKWRKYIEVLQW 652

Query: 392 AKEDGVIPNLVMFKCII 408
             + G+ P+  M+  I+
Sbjct: 653 MNDAGIQPSHAMYNNIL 669


>gi|357474081|ref|XP_003607325.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508380|gb|AES89522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 171/394 (43%), Gaps = 19/394 (4%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L++     G+++E  +L E M  KG+      Y+      CK +  + +A+   K 
Sbjct: 431 TYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLILGHCK-KGCMDKAYSMLKS 489

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T+ +L+       DSE AF V   +  A +      + T+I    K+G+
Sbjct: 490 ILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDHTFNTVINGLGKTGR 549

Query: 143 V----DAMFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           V    D +   +K       + +N++I    + GAVD A     EM      + PD IT 
Sbjct: 550 VSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREMCES--GISPDVITY 607

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +L+     + ++  A E++  +    +K     Y+  I+   +  D E A   + ++  
Sbjct: 608 TSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDMESASKFFTELLD 667

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G+ P+ V  +++I    H   +EAA  + QE     +   +  Y+S++G          
Sbjct: 668 IGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSIIGGLLKEGKLSL 727

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           AL+LY  M S  + P +     LI  L +  QL    ++L +M    + P+ + Y+IL+ 
Sbjct: 728 ALDLYSEMLSKDIVPDIVMYTVLINGLSNNGQLENASKILKEMDGNNITPSVLVYNILIA 787

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              R+ +++    L  +  + G++P+   +  ++
Sbjct: 788 GNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILV 821



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/389 (22%), Positives = 167/389 (42%), Gaps = 21/389 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-------GK 142
           P +  F++L++ C+   D E A+++   ++  G++ +  +  +L+    +        G 
Sbjct: 358 PDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLEHAYGL 417

Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
            D   E+   + V +N L+   G+ G V+ A ++  +M ++   + P  ++   L+    
Sbjct: 418 FDEAVEHGITNVVTYNILLKWLGELGKVNEACNLWEKMVSK--GITPSLVSYNNLILGHC 475

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G +D+A  + K I +  +K     YT+ I+   + GD E A  V++ M    + P + 
Sbjct: 476 KKGCMDKAYSMLKSILERGLKPNAVTYTLLIDGFFKKGDSERAFVVFEQMMAANIAPTDH 535

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + +I+  G  G+V    + L     QG     I+Y+S++           AL  Y  M
Sbjct: 536 TFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVDSALLAYREM 595

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               + P V T  +LI  LC  +++   +E+ SDMK  G+  + + YS L+    +  D+
Sbjct: 596 CESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALIDGFCKMHDM 655

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWT-- 440
           E      ++  + G+ PN V++  +I            LN H     +  P     +T  
Sbjct: 656 ESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVPCDLQVYTSI 715

Query: 441 ----------SLALMVYREAIVAGTIPTV 459
                     SLAL +Y E +    +P +
Sbjct: 716 IGGLLKEGKLSLALDLYSEMLSKDIVPDI 744



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 106/239 (44%), Gaps = 8/239 (3%)

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           + D      L+K+     ++  A E ++ + ++++   P V  I  N  +        C 
Sbjct: 147 ESDSRVFNYLLKSFVRVNKITDAVECFRTMLEHDL--VPWV-PIMNNLLTAMVRRNMVCD 203

Query: 248 ---VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
              +YD+M ++G+  D   L  ++      GK E   +  +EAK +G+ V   +YS L+ 
Sbjct: 204 ARQLYDEMVERGIYGDCYTLHVVMRACMKEGKFEEVEKFFKEAKGRGLEVDAAAYSILVQ 263

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
           A     +   A EL + M+     P+  T  A+I A        + + +  +M S+GL  
Sbjct: 264 AVCRRLDLNLACELLKEMREFGWVPSKGTYTAVIVACVKQGNFVEALRLKDEMVSVGLPM 323

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 421
           N I    L+       DV + L L  +  E GV+P++V+F  +I  CS+    EKA  L
Sbjct: 324 NVIVTRSLMKGYCVLGDVNLALQLFDEVVEGGVVPDVVIFSVLINGCSKVGDMEKAYEL 382



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 104/489 (21%), Positives = 200/489 (40%), Gaps = 47/489 (9%)

Query: 66  RFFNVCKSQKA-IKEAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           RF     S K+  K A +FF  V        T+   ++L+ + +S+  +  + Q L    
Sbjct: 62  RFLVTLLSHKSNPKSALKFFHQVERKRGFVKTVDFISLLIHILSSNSKTCSSLQFLLNNY 121

Query: 120 EAG-LKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLA 178
             G      K++   +  C  SG+    FE+   D  VFN L+ +  +   +  A +   
Sbjct: 122 VFGDATPSAKVFVECLLEC--SGRYG--FES---DSRVFNYLLKSFVRVNKITDAVECFR 174

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
            M    H + P    +  L+ A      V  AR++Y  + +  I G      + +  C +
Sbjct: 175 TMLE--HDLVPWVPIMNNLLTAMVRRNMVCDARQLYDEMVERGIYGDCYTLHVVMRACMK 232

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G +E     + +   +G+  D    S L+        +  A E+L+E +  G      +
Sbjct: 233 EGKFEEVEKFFKEAKGRGLEVDAAAYSILVQAVCRRLDLNLACELLKEMREFGWVPSKGT 292

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y++++ AC    N+ +AL L + M S+ L   V    +L+   C    +   +++  ++ 
Sbjct: 293 YTAVIVACVKQGNFVEALRLKDEMVSVGLPMNVIVTRSLMKGYCVLGDVNLALQLFDEVV 352

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII------GMCS 412
             G+ P+ + +S+L+  C +  D+E    L ++ K  G+ PN+ +   ++       +  
Sbjct: 353 EGGVVPDVVIFSVLINGCSKVGDMEKAYELYTRMKLMGIQPNVFIVNSLLEGFHEQNLLE 412

Query: 413 RRYEKARTLNEHVLSFNSGRPQIENKW------TSLALMVYREAIVAGTIPTVEVVSKVL 466
             Y       EH ++ N     I  KW       + A  ++ + +  G  P++   + ++
Sbjct: 413 HAYGLFDEAVEHGIT-NVVTYNILLKWLGELGKVNEACNLWEKMVSKGITPSLVSYNNLI 471

Query: 467 ------GCLQLPYN--ADIRERLVENLGVSADALKRSNLCSLIDGFGEY--DPRAFSLLE 516
                 GC+   Y+    I ER     G+  +A+  +    LIDGF +     RAF + E
Sbjct: 472 LGHCKKGCMDKAYSMLKSILER-----GLKPNAVTYT---LLIDGFFKKGDSERAFVVFE 523

Query: 517 EAASFGIVP 525
           +  +  I P
Sbjct: 524 QMMAANIAP 532



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 126/298 (42%), Gaps = 52/298 (17%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQ 74
           A +++   H++N +I    + GR+SE  D L +  ++G +     Y++    FF      
Sbjct: 527 AANIAPTDHTFNTVINGLGKTGRVSETQDKLNNFIKQGFVSTSITYNSIIDGFFKEGAVD 586

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSK--------------------------- 106
            A+       +   +P + T+  L+  +C S+K                           
Sbjct: 587 SALLAYREMCESGISPDVITYTSLIDGLCKSNKIGLALEMHSDMKYKGMKLDVVAYSALI 646

Query: 107 -------DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MFENVKP 152
                  D E A +    + + GL  +  +Y ++I+       ++A       M +N  P
Sbjct: 647 DGFCKMHDMESASKFFTELLDIGLTPNTVVYNSMISGFIHLNNMEAALNLHQEMIKNKVP 706

Query: 153 -DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
            D  V+ ++I    + G +  A D+ +EM ++   + PD +    L+   +N GQ++ A 
Sbjct: 707 CDLQVYTSIIGGLLKEGKLSLALDLYSEMLSK--DIVPDIVMYTVLINGLSNNGQLENAS 764

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           ++ K +   NI  +  VY I I    + G+ + A  ++D+M  KG++PD+     L++
Sbjct: 765 KILKEMDGNNITPSVLVYNILIAGNFREGNLQEAFRLHDEMLDKGLVPDDTTYDILVN 822


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 178/413 (43%), Gaps = 35/413 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK----------A 76
           +YN L+    + G++ + +DLL +M+R+G    D  Y+     + K  +           
Sbjct: 236 TYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEM 295

Query: 77  IKEAFRFFKLVPNPTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           +K   +      NP +   FN  M   A S   E   +        G       Y + I 
Sbjct: 296 LKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLK--------GASPTVATYNSFIY 347

Query: 136 TCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K G++        D +  N+ PD V +N LI    + G + +AF +  E+ +    +
Sbjct: 348 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIY--L 405

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P  +T   L+      G+++ A+++   +    I      YTI +N   + G    A  
Sbjct: 406 FPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQE 465

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
            +D+M  +G+  D    +  I      G    AF + +E   +G    +I Y+ ++    
Sbjct: 466 FFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLC 525

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
              N ++A EL + M S  + P   T  ++I A  +  +L K  E+  +M S GL P+ +
Sbjct: 526 KLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVV 585

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKA 418
           TY++L+     K  +E   +  S+ +E G++PN++ +  +I G+C  RR ++A
Sbjct: 586 TYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQA 638



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 167/389 (42%), Gaps = 23/389 (5%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LI     +G ++E + L E+M  KG       Y++  + +CK  +      +   
Sbjct: 305 YTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSD 364

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141
           ++ N   P + ++N L+       +   AF +   ++   L      Y TL+    + G 
Sbjct: 365 MLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGE 424

Query: 142 -------KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
                  KV+ + E + PD V +  L+    + G++  A +   EM  E   ++ D    
Sbjct: 425 LEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHE--GLELDSYAY 482

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDD 251
              +      G   RA   + +  +   KG P    +Y + ++   + G+ E A  +   
Sbjct: 483 ATRIVGELKLGDTSRA---FSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQK 539

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M   GVIPD V  +++I      G++    EI  E  ++G++  +++Y+ L+   +    
Sbjct: 540 MVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGR 599

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            ++A   +  M+   + P V T N+LI  LC   ++ +     ++M   G+ PN  +Y+I
Sbjct: 600 LERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTI 659

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           L+       + +  L L  Q  + GV P+
Sbjct: 660 LINENCNMGNWQEALSLYKQMLDRGVQPD 688



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 175/395 (44%), Gaps = 21/395 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRF 83
           +YN LI    ++G   +   L+ +M + GL      Y+     +FN     +A+      
Sbjct: 271 TYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEM 330

Query: 84  FKLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141
                +PT++T+N  +  +C   + S+ A Q L  +    L  D   Y TLI    + G 
Sbjct: 331 VLKGASPTVATYNSFIYGLCKLGRMSD-AMQQLSDMLANNLLPDVVSYNTLIYGYCRLGN 389

Query: 142 --KVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
             K   +F+ ++     P  V +N L+    + G ++ A  +  EM  E   + PD +T 
Sbjct: 390 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINE--GIAPDIVTY 447

Query: 195 GALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             L+      G +  A+E + +M+H+  ++     Y   I    + GD   A S+ ++M 
Sbjct: 448 TILVNGSCKMGSLSMAQEFFDEMLHE-GLELDSYAYATRIVGELKLGDTSRAFSLQEEML 506

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            KG  PD +  + ++D     G +E A E+LQ+  + G+    ++Y+S++ A       +
Sbjct: 507 AKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLR 566

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           K  E++  M S  L P+V T   LI       +L +     S+M+  G+ PN ITY+ L+
Sbjct: 567 KGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLI 626

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
               +   ++      ++  E G+ PN   +  +I
Sbjct: 627 NGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILI 661



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 157/368 (42%), Gaps = 56/368 (15%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN  I    + GR+S+ +  L DM    LL     Y+   +  C+    +K AF
Sbjct: 336 SPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMK-AF 394

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             F  + +    PT+ T+N L+       + E A Q+   +   G+  D   YT L+   
Sbjct: 395 LLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGS 454

Query: 138 AKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD- 188
            K G +        + + E ++ D   +   I    + G   RAF +  EM A+  P D 
Sbjct: 455 CKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDL 514

Query: 189 --------------------------------PDHITIGALMKACANAGQVDRAREV-YK 215
                                           PD++T  +++ A    G++ + RE+ Y+
Sbjct: 515 IIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYE 574

Query: 216 MIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           M+ K     TP V  YT+ I+  +  G  E A   + +M +KG++P+ +  ++LI+    
Sbjct: 575 MLSK---GLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCK 631

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
             +++ A+    E   +GI     SY+ L+    N  NWQ+AL LY+ M    ++P   T
Sbjct: 632 VRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCT 691

Query: 334 MNALITAL 341
            +AL+  L
Sbjct: 692 HSALLKQL 699



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 119/259 (45%), Gaps = 3/259 (1%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           + + LI    +   V++   V  +M      + PD      +++   +   + +A EVY+
Sbjct: 166 ILDLLIWVYSKKSMVEQCLSVFDKMIKS--RLSPDVKNCNRILRILRDKDLMSKAVEVYR 223

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            + ++ IK T   Y   ++   + G  +    +  +M ++G  P++V  + LI+     G
Sbjct: 224 TMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKG 283

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           + E A  ++ E    G+ V   +Y+ L+    N     +AL L E M      PTV+T N
Sbjct: 284 EFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYN 343

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
           + I  LC   ++   M+ LSDM +  L P+ ++Y+ L+    R  ++    +L  + +  
Sbjct: 344 SFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSI 403

Query: 396 GVIPNLVMFKCII-GMCSR 413
            + P +V +  ++ G+C +
Sbjct: 404 YLFPTIVTYNTLLDGLCRQ 422



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 121/285 (42%), Gaps = 29/285 (10%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P +   N ++ +         A +V R + E G+K     Y TL+ +  K GK      
Sbjct: 196 SPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGK------ 249

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
                                V +  D+L+EM  +     P+ +T   L+   +  G+ +
Sbjct: 250 ---------------------VQQGLDLLSEM--QRRGCAPNDVTYNVLINGLSKKGEFE 286

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
           +A+ +   + K  +K +   Y   I      G    A S+ ++M  KG  P     ++ I
Sbjct: 287 QAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFI 346

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                 G++  A + L +     +   ++SY++L+       N  KA  L++ ++SI L 
Sbjct: 347 YGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLF 406

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           PT+ T N L+  LC   +L    ++  +M + G+ P+ +TY+IL+
Sbjct: 407 PTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILV 451



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 125/292 (42%), Gaps = 23/292 (7%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN------- 89
           + G +S   +  ++M  +GL      Y  R     K    + +  R F L          
Sbjct: 456 KMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELK----LGDTSRAFSLQEEMLAKGFP 511

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P L  +N+++       + E A ++L+ +   G+  D   YT++I    ++G++      
Sbjct: 512 PDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREI 571

Query: 144 --DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             + + + + P  V +  LI      G ++RAF   +EM  +   + P+ IT  +L+   
Sbjct: 572 FYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEK--GILPNVITYNSLINGL 629

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               ++D+A   +  + +  I      YTI IN     G+W+ A S+Y  M  +GV PD 
Sbjct: 630 CKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDS 689

Query: 262 VFLSALIDFAGHAGKVEAAF--EILQEAKNQGISVGIISYSSLMGACSNAKN 311
              SAL+   G   K++A      +  AK   +S  + + ++L    S A+N
Sbjct: 690 CTHSALLKQLGKDCKLQAVHGTSTMPTAKVDLLSQTVGAATALTSVSSIAEN 741



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 20/232 (8%)

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           ++ L +++ M   +L P V   N ++  L D D + K +EV   M   G+ P  +TY+ L
Sbjct: 181 EQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTL 240

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVL---- 426
           L +  +   V+ GL LLS+ +  G  PN V +  +I   S++  +E+A+ L   +L    
Sbjct: 241 LDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGL 300

Query: 427 --SFNSGRPQIENKWT----SLALMVYREAIVAGTIPTVEVV-SKVLGCLQLPYNADIRE 479
             S  +  P I   +     + AL +  E ++ G  PTV    S + G  +L   +D  +
Sbjct: 301 KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQ 360

Query: 480 RLVENLG--VSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVPCV 527
           +L + L   +  D +  +   +LI G+       +AF L +E  S  + P +
Sbjct: 361 QLSDMLANNLLPDVVSYN---TLIYGYCRLGNLMKAFLLFDELRSIYLFPTI 409


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 115/477 (24%), Positives = 198/477 (41%), Gaps = 48/477 (10%)

Query: 5   GKNMLQFPYP------NGKHANYAH--DVSEQLHSYNRLIRQG----------------- 39
           G  ML  P P      N   + Y H   + + L S+NR++                    
Sbjct: 27  GTGMLSIPSPFLSLLHNRFRSKYLHFNTLDDALSSFNRMLHMHPPPSIVDFAKILTSITK 86

Query: 40  --RISECIDLLEDMERKGL---LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
             R S  + L   M+  G+   +    V    F ++ +   A     +  KL   P  ++
Sbjct: 87  VKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTAS 146

Query: 95  FNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           F  L+  +C   +  E      +++ E G + D  +Y TLI    K+G   A        
Sbjct: 147 FTTLIKGLCLEGQIGEALHLFDKMIWE-GFQPDVVIYATLINGLCKTGHTSAAIRLLRSM 205

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
              N +PD VV+  LI +  +     +AF++ +EM  +   + P+ +T  +L+ A  N G
Sbjct: 206 EKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITK--GISPNIVTCNSLVYALCNLG 263

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +      +   +    I       T  ++   + G    A  V D M + GV PD V  +
Sbjct: 264 EWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYT 323

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           ALID      +++ A ++     ++G +  + SY++L+      +   KA+ L+E M   
Sbjct: 324 ALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQ 383

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           KL P   T N LI  LC   +L   + +  +M + G  P+ +TY ILL    +   ++  
Sbjct: 384 KLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKA 443

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWT 440
           + LL   +   + P++ ++  +I GMC +   E AR L  + LS    +P   N WT
Sbjct: 444 MALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSN-LSSKGLKP---NVWT 496



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 81/344 (23%), Positives = 145/344 (42%), Gaps = 23/344 (6%)

Query: 128 KLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
           K Y+T+++    S K+D+    +  +    N LI +      V+ AF VLA++       
Sbjct: 88  KRYSTVLSL---SRKMDSF--GIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKL--GC 140

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            PD  +   L+K     GQ+  A  ++  +     +    +Y   IN   +TG    A  
Sbjct: 141 QPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIR 200

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +   M K    PD V    LI       +   AF +  E   +GIS  I++ +SL+ A  
Sbjct: 201 LLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALC 260

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
           N   W+    L   M   K+ P   ++  ++ ALC    + +  +V+  M   G+ P+ +
Sbjct: 261 NLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVV 320

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNE-- 423
           TY+ L+     + +++  + +       G  PN+  +  +I G C   R +KA  L E  
Sbjct: 321 TYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEM 380

Query: 424 -------HVLSFNS---GRPQIENKWTSLALMVYREAIVAGTIP 457
                  + +++N+   G   +     ++AL  +RE +  G IP
Sbjct: 381 CRQKLIPNTVTYNTLIHGLCHVGRLQDAIAL--FREMVACGQIP 422



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 162/392 (41%), Gaps = 15/392 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N L + G  S  I LL  ME+        VY     ++CK ++  +    F +++    +
Sbjct: 187 NGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGIS 246

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P + T N L+    +  + +    +L  + ++ +  +    TT++    K G V      
Sbjct: 247 PNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDV 306

Query: 144 -DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKA 200
            D MF++ V+PD V + ALI        +D A  V   M   VH    P+  +   L+  
Sbjct: 307 VDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMM---VHKGCAPNVFSYNTLING 363

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                ++D+A  +++ + +  +      Y   I+     G  + A +++ +M   G IPD
Sbjct: 364 YCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPD 423

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V    L+D+      ++ A  +L+  +   +   I  Y+ ++     A   + A +L+ 
Sbjct: 424 LVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFS 483

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           ++ S  LKP V T N +   LC    L +  ++  +M       +  TY+ +     R +
Sbjct: 484 NLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNN 543

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           +    + LL +    G   ++     ++GM S
Sbjct: 544 ETSRAIQLLEEMLARGFSCDVSTTTLLVGMLS 575



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 63/340 (18%), Positives = 145/340 (42%), Gaps = 29/340 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L ++G +++  D+++ M + G+ + D V +    +    +  + EA + F ++ +    P
Sbjct: 294 LCKEGMVAQAHDVVDMMFQSGV-EPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAP 352

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMF 147
            + ++N L++     +  + A  +   +    L  +   Y TLI      G++    A+F
Sbjct: 353 NVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALF 412

Query: 148 ENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
             +      PD V +  L+    ++  +D+A  +L  +  E   +DPD      ++    
Sbjct: 413 REMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAI--EGSNLDPDIQIYTIVIDGMC 470

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AG+++ AR+++  +    +K     Y I  +   + G  + A  ++ +M +     D  
Sbjct: 471 RAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGC 530

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS----NAKNWQKALEL 318
             + +        +   A ++L+E   +G S  + + + L+G  S    +     K  ++
Sbjct: 531 TYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGMLSDDGLDQSEAHKLEDM 590

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           + H++ I++K TV          C  D +    +V+SD+ 
Sbjct: 591 FPHLR-IQVKDTV---------FCKEDDINALGKVISDLN 620


>gi|2244996|emb|CAB10416.1| salt-inducible protein homolog [Arabidopsis thaliana]
 gi|7268388|emb|CAB78681.1| salt-inducible protein homolog [Arabidopsis thaliana]
          Length = 777

 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 174/388 (44%), Gaps = 34/388 (8%)

Query: 139 KSGKV-DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           KS K+ D M E  +KPD   F  +I+   Q+G   RA +   +M++     +PD++T+ A
Sbjct: 268 KSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSS--FGCEPDNVTMAA 325

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ A   AG VD A  +Y        +     ++  I     +G+++   ++Y++M   G
Sbjct: 326 MIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALG 385

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V P+ V  + LID  G A +   A  I ++    G +    +Y++L+ A   A+    AL
Sbjct: 386 VKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDAL 445

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLV- 374
            +Y  MK   L  TV   N L++   D   + +  E+  DMK+   C P++ T+S L+  
Sbjct: 446 AIYREMKEKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDMKNCETCDPDSWTFSSLITV 505

Query: 375 -ACE-RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
            AC  R    E  L+   Q +E G  P L +   +I  C   Y KA+ +++ V +F+   
Sbjct: 506 YACSGRVSKAEAALL---QIREAGFEPTLFVLTSVI-QC---YGKAKQVDDVVRTFDQ-- 556

Query: 433 PQIENKWTSLALMVYREAIVAGTIPTV------EVVSKVLGCLQ--LPYNADIRERLVEN 484
                    L L +  +    G +  V      E + K++GC++   P    + + LVE 
Sbjct: 557 --------VLELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEE 608

Query: 485 LGVSADALKRSNLCSLIDGFGEYDPRAF 512
                   K+     LID  G    +A+
Sbjct: 609 QNCEEGVFKK-EASELIDSIGSDVKKAY 635



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 153/335 (45%), Gaps = 11/335 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVD 144
           P+  +  +N+ M V   SKD E + ++   + E G+K D   +TT+I+   ++G   +  
Sbjct: 246 PSREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAV 305

Query: 145 AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             FE +     +PD V   A+I A G++G VD A  +      E   +D   +T   L++
Sbjct: 306 EWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDA--VTFSTLIR 363

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               +G  D    +Y+ +    +K    +Y   I+   +      A  +Y D+   G  P
Sbjct: 364 IYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTP 423

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    +AL+   G A   + A  I +E K +G+S+ +I Y++L+  C++ ++  +A E++
Sbjct: 424 NWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRHVDEAFEIF 483

Query: 320 EHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           + MK+ +   P   T ++LIT      ++ K    L  ++  G  P     + ++    +
Sbjct: 484 QDMKNCETCDPDSWTFSSLITVYACSGRVSKAEAALLQIREAGFEPTLFVLTSVIQCYGK 543

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
              V+  +    Q  E G+ P+     C++ + ++
Sbjct: 544 AKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQ 578



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 74/321 (23%), Positives = 146/321 (45%), Gaps = 28/321 (8%)

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           I     MK    +  ++++ +++  + +  IK     +T  I+C  Q G  + A   ++ 
Sbjct: 251 ILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEK 310

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M+  G  PD V ++A+ID  G AG V+ A  +   A+ +   +  +++S+L+     + N
Sbjct: 311 MSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGN 370

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           +   L +YE MK++ +KP +   N LI ++    +  +   +  D+ + G  PN  TY+ 
Sbjct: 371 YDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAA 430

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFN 429
           L+ A  R    +  L +  + KE G+   ++++  ++ MC+  R  ++A  + + + +  
Sbjct: 431 LVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRHVDEAFEIFQDMKNCE 490

Query: 430 SGRPQIENKWT-----------------SLALMVYREAIVAGTIPTVEVVSKVLGCLQLP 472
           +  P   + WT                   AL+  RE   AG  PT+ V++ V+ C    
Sbjct: 491 TCDP---DSWTFSSLITVYACSGRVSKAEAALLQIRE---AGFEPTLFVLTSVIQCYGKA 544

Query: 473 YNADIRERLVEN---LGVSAD 490
              D   R  +    LG++ D
Sbjct: 545 KQVDDVVRTFDQVLELGITPD 565



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 145/371 (39%), Gaps = 69/371 (18%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +++ LIR     G    C+++ E+M+  G+     +Y+    ++ ++++  +    +  L
Sbjct: 357 TFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDL 416

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + N   P  ST+  L+     ++  + A  + R ++E GL     LY TL++ CA +  V
Sbjct: 417 ITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRHV 476

Query: 144 DAMF---------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           D  F         E   PD   F++LIT    SG V +A   L ++       +P    +
Sbjct: 477 DEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSKAEAALLQIREA--GFEPTLFVL 534

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE----FACS--- 247
            ++++    A QVD     +  + +  I          +N  +QT   E      C    
Sbjct: 535 TSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKA 594

Query: 248 -----------VYDDMTKKGVIPDE--------------VFLSALIDFAGHAGKVEAAFE 282
                      V +   ++GV   E               +L+ LID   +  K+E A E
Sbjct: 595 KPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLIDLCVNLNKLERACE 654

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT--- 339
           ILQ      I  G+ S S        A  W        H+KS+ L   ++ ++  +    
Sbjct: 655 ILQLGLEYDIYTGLQSKS--------ATQWSL------HLKSLSLGAALTALHVWMNDLS 700

Query: 340 --ALCDGDQLP 348
             AL  G++ P
Sbjct: 701 EAALESGEEFP 711


>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Brachypodium distachyon]
          Length = 968

 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 129/550 (23%), Positives = 229/550 (41%), Gaps = 90/550 (16%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           LH Y   +++GR    + +LEDME+ G+      Y+     +CK +++   A+   K + 
Sbjct: 266 LHWY---VKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMKRS-THAYLLLKRMR 321

Query: 89  NPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
              L+    T+N L+           A  +   +   GLK     YTTLI    ++G +D
Sbjct: 322 GDNLAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTID 381

Query: 145 ----AMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAE----------------- 179
                ++E     VKP  V ++A++     +G+V  AF V                    
Sbjct: 382 EALRVLYEMQVAGVKPSEVTYSAML-----NGSVHEAFSVYDNMEKYGCSPDVYTYRNLL 436

Query: 180 ---------------MNAEVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
                          M+  VH P   D  T+ AL+    N G +D A ++ + +   N  
Sbjct: 437 RGLCKGGHLVQAKEFMSCIVHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFI 496

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                YTI ++   + G    A  +   M +KG++PD V  + L+      G+V+AA  +
Sbjct: 497 PDIHTYTILLSGFCRKGKIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAASYL 556

Query: 284 LQEAK-NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
            QE    +G+    I+Y+S+M     A    K       M   K+ P  ++ N L+    
Sbjct: 557 FQEIICKEGMYADCIAYNSMMNGYLKAGKLHKVEMTIYDMNQNKVYPNPASYNILMHGHI 616

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
               L +++ +  DM   G+ P  +TY +L++   +   +E+ +  L +   +G+ P+ +
Sbjct: 617 KKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRL 676

Query: 403 MFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVV 462
            F  +I   S   EK+R +++ +  FN        KW  ++             P+ +  
Sbjct: 677 SFDVLINAFS---EKSR-MSDALQLFNC------MKWLYMS-------------PSSKTY 713

Query: 463 SKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDG---FGEYDPRAFSLL 515
           S ++  L     L ++ D+   +VE    S    K ++  +LI+    FG+ +  AF L 
Sbjct: 714 SAMINGLIRKNWLQHSCDVLRDMVE----SGLEPKHTHYIALINAKCRFGDING-AFRLK 768

Query: 516 EEAASFGIVP 525
           EE  + GIVP
Sbjct: 769 EEMTALGIVP 778



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 143/325 (44%), Gaps = 14/325 (4%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K+ PNP  +++N+LM           +  + + +   G+K     Y  LI   +K G ++
Sbjct: 600 KVYPNP--ASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSKHGMIE 657

Query: 145 --------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                    + E + PDR+ F+ LI A  +   +  A  +   M      + P   T  A
Sbjct: 658 IAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWLY--MSPSSKTYSA 715

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++        +  + +V + + +  ++     Y   IN   + GD   A  + ++MT  G
Sbjct: 716 MINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALINAKCRFGDINGAFRLKEEMTALG 775

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKA 315
           ++P EV  S+++      GKVE    +       G+   I ++++LM G C  AK    A
Sbjct: 776 IVPAEVADSSIVRGLSKCGKVEEGIIVFCSIIRAGMVPTIATFTTLMHGLCKEAK-ISDA 834

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           L L   M+S  LK  V T N LIT LC    +   +E+  +MKS GL PN  TY+ L  A
Sbjct: 835 LHLKSLMESCGLKIDVVTYNVLITGLCKIQCVSDALELYEEMKSKGLRPNVTTYTTLTEA 894

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPN 400
                    G  LL+  ++ G++P+
Sbjct: 895 IYGTGRTLEGEKLLNDIEDRGLVPS 919



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 115/508 (22%), Positives = 200/508 (39%), Gaps = 45/508 (8%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI--KEAFRFFKLVPNPT-LST 94
            G + E   + ++ME+ G       Y      +CK    +  KE       +P+     T
Sbjct: 407 NGSVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCIVHIPSAIDQKT 466

Query: 95  FN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAM 146
            N +L+ +C      E A  +   +       D   YT L++   + GK+         M
Sbjct: 467 LNALLLGICNHGSLDE-ALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQMM 525

Query: 147 FEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
            E  + PD V +  L+    + G V  A  +  E+  +   +  D I   ++M     AG
Sbjct: 526 LEKGLVPDIVTYTCLLKGLIKEGQVKAASYLFQEIICK-EGMYADCIAYNSMMNGYLKAG 584

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++ +       +++  +   P  Y I ++   + G    +  +Y DM +KG+ P  V   
Sbjct: 585 KLHKVEMTIYDMNQNKVYPNPASYNILMHGHIKKGHLSRSIYLYKDMVRKGIKPTNVTYR 644

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LI      G +E A + L +   +GI    +S+  L+ A S       AL+L+  MK +
Sbjct: 645 LLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSEKSRMSDALQLFNCMKWL 704

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + P+  T +A+I  L   + L  + +VL DM   GL P    Y  L+ A  R  D+   
Sbjct: 705 YMSPSSKTYSAMINGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALINAKCRFGDINGA 764

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM 445
             L  +    G++P  V    I+    R   K   + E ++ F S               
Sbjct: 765 FRLKEEMTALGIVPAEVADSSIV----RGLSKCGKVEEGIIVFCS--------------- 805

Query: 446 VYREAIVAGTIPTVEVVSKVLG--CLQLPYNADIR-ERLVENLGVSADALKRSNLCSLID 502
                I AG +PT+   + ++   C +   +  +  + L+E+ G+  D +  +    LI 
Sbjct: 806 ----IIRAGMVPTIATFTTLMHGLCKEAKISDALHLKSLMESCGLKIDVVTYN---VLIT 858

Query: 503 GFGEYD--PRAFSLLEEAASFGIVPCVS 528
           G  +      A  L EE  S G+ P V+
Sbjct: 859 GLCKIQCVSDALELYEEMKSKGLRPNVT 886



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 136/334 (40%), Gaps = 34/334 (10%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           K  K      K    P + T+N ++         + A  VL  +++ G++AD   Y  +I
Sbjct: 242 KGAKHMIHKMKSCSLPNVITYNTILHWYVKKGRFKAAMCVLEDMEKNGVEADVYTYNIMI 301

Query: 135 TTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
               K  +                              A+ +L  M  +   + PD  T 
Sbjct: 302 DKLCKMKR---------------------------STHAYLLLKRMRGD--NLAPDECTY 332

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+K   +  ++  A  ++  + +  +K +   YT  I+   + G  + A  V  +M  
Sbjct: 333 NTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYTTLIDGYCRNGTIDEALRVLYEMQV 392

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            GV P EV  SA+++     G V  AF +    +  G S  + +Y +L+       +  +
Sbjct: 393 AGVKPSEVTYSAMLN-----GSVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQ 447

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A E    +  I       T+NAL+  +C+   L + +++   M ++   P+  TY+ILL 
Sbjct: 448 AKEFMSCIVHIPSAIDQKTLNALLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLS 507

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              RK  +   ++LL    E G++P++V + C++
Sbjct: 508 GFCRKGKIVPAVILLQMMLEKGLVPDIVTYTCLL 541



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 111/257 (43%), Gaps = 13/257 (5%)

Query: 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 217
           NA++ A  + G     +  L E      P+D    T   ++ +    G +  A+    MI
Sbjct: 194 NAVLNALVEIGESKHVWFFLKEGLVRKFPLDVT--TCNIVLNSMCIEGNLKGAKH---MI 248

Query: 218 HKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
           HK      P V  Y   ++   + G ++ A  V +DM K GV  D    + +ID      
Sbjct: 249 HKMKSCSLPNVITYNTILHWYVKKGRFKAAMCVLEDMEKNGVEADVYTYNIMIDKLCKMK 308

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           +   A+ +L+  +   ++    +Y++L+    +      A+ ++  M    LKP+++T  
Sbjct: 309 RSTHAYLLLKRMRGDNLAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQGLKPSLATYT 368

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI   C    + + + VL +M+  G+ P+ +TYS +L        V     +    ++ 
Sbjct: 369 TLIDGYCRNGTIDEALRVLYEMQVAGVKPSEVTYSAML-----NGSVHEAFSVYDNMEKY 423

Query: 396 GVIPNLVMFKCII-GMC 411
           G  P++  ++ ++ G+C
Sbjct: 424 GCSPDVYTYRNLLRGLC 440


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 186/404 (46%), Gaps = 25/404 (6%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S   H+YN L+    R G + E   ++E M R  LL     Y+      C   K I EA
Sbjct: 279 LSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGK-IDEA 337

Query: 81  FRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           FR      K+   P + T+N L+  C+  +DS   + ++  + + G+K +   Y  ++  
Sbjct: 338 FRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKW 397

Query: 137 CAKSGK-------VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K G        +D M EN + PD V +N LI A  ++G + +AF ++ EM ++   +D
Sbjct: 398 MCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKID 457

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEV-YTIAINCCSQTGDWEFA 245
               T+  ++       ++D   E Y ++   + +G    EV Y I I    +    + A
Sbjct: 458 T--WTLNTILHCLCVEKKLD---EAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRA 512

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
            +++D+M ++ ++P  +  +++I     + KV+ A + L E    G+     +Y+ ++  
Sbjct: 513 LNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHG 572

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
                N +KA + +  M     KP V T N L+  LC    L K +++ + + S G   +
Sbjct: 573 FCLEGNVEKAFQFHNEMIENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDID 632

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            +TY+ ++ +  ++   E    LL++ +   + P+   +K II 
Sbjct: 633 VVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIA 676



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 157/346 (45%), Gaps = 15/346 (4%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC--------AKS 140
           P  ++FN+L+   C  SK  + A   +  + E G   D   Y T++           A+ 
Sbjct: 211 PNTNSFNILIYGYCLESK-VKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARD 269

Query: 141 GKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             +D   + + P++  +N L+    + G +  A  V+  M    + + P   T   L+  
Sbjct: 270 LLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTR--NNLLPTVWTYNMLVNG 327

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             N G++D A  +   + K N+      Y   I+ CSQ  D     S+ ++M KKGV  +
Sbjct: 328 FCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCN 387

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + ++ +    G +  A   L + +  G+S   ++Y++L+GA   A    KA  + +
Sbjct: 388 AVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMD 447

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M S  LK    T+N ++  LC   +L +   +L      G   + ++Y IL++   + +
Sbjct: 448 EMTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDE 507

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKA-RTLNE 423
             +  L L  + KE  ++P+ + +  +I G+C SR+ ++A   LNE
Sbjct: 508 KGDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNE 553



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 175/403 (43%), Gaps = 28/403 (6%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +S+N LI     + ++ + +D +  M   G +  D V +    +    ++ ++EA     
Sbjct: 214 NSFNILIYGYCLESKVKDALDWVNKMSEFGCVP-DTVSYNTILDALLKRRLLQEARDLLL 272

Query: 86  LVPNPTLS----TFNMLMSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            + +  LS    T+NML  VC   +    + A +V+ ++    L      Y  L+     
Sbjct: 273 DMKSKGLSPNKHTYNML--VCGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCN 330

Query: 140 SGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            GK+D  F         NV PD V +N LI  C Q       + ++ EM+ +   V  + 
Sbjct: 331 DGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKK--GVKCNA 388

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T   ++K     G +  A      + +  +      Y   I    + G    A  + D+
Sbjct: 389 VTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDE 448

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           MT KG+  D   L+ ++       K++ A+ +L  A  +G  +  +SY  L+      + 
Sbjct: 449 MTSKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEK 508

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +AL L++ MK  ++ P+  T N++I  LC   ++ + ++ L++M   GL P+  TY+I
Sbjct: 509 GDRALNLWDEMKERQIMPSTITYNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNI 568

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMC 411
           ++     + +VE      ++  E+   P++  + C I   G+C
Sbjct: 569 IIHGFCLEGNVEKAFQFHNEMIENLFKPDV--YTCNILLRGLC 609



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 76/170 (44%)

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  V  D  K GV+P+    + LI       KV+ A + + +    G     +SY++++
Sbjct: 196 LARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTIL 255

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
            A    +  Q+A +L   MKS  L P   T N L+   C    L +  +V+  M    L 
Sbjct: 256 DALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLL 315

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           P   TY++L+        ++    +  + ++  V+P++V +  +I  CS+
Sbjct: 316 PTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQ 365



 Score = 42.4 bits (98), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALC---DGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           A +++  MK +  +P + T N L+ +L        +    +VL D   LG+ PNT +++I
Sbjct: 159 ATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSSILLARQVLKDSIKLGVVPNTNSFNI 218

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTL 421
           L+     +  V+  L  +++  E G +P+ V +  I+    +R   ++AR L
Sbjct: 219 LIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDL 270


>gi|397621823|gb|EJK66480.1| hypothetical protein THAOC_12600 [Thalassiosira oceanica]
          Length = 820

 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 163/387 (42%), Gaps = 61/387 (15%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAFRFFKLVP---- 88
           L  + + S+   LL  M R+G+      ++A    VC S K+   +EA            
Sbjct: 363 LASKQQFSQMNTLLTSMRRRGVRPTVYTFNA-LLKVCASSKSPRWREAVSLLSQCQREPG 421

Query: 89  -NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----- 142
            +P + T+   M   A  K +  A  + R +++ G++ D   YTT +  CAK+       
Sbjct: 422 VSPDIITYTSTMRALAKGKQARKALDLFRAMKDTGIQLDVFAYTTTMDACAKTNNWKKAL 481

Query: 143 --VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             ++ M E NV P+ V +   + ACG  G    A  +L  MN     +  + IT  + + 
Sbjct: 482 QLLEEMRENNVPPNEVTYGVAVNACGNGGQWQTALSLLQTMNDSGMRI--NSITYNSAIA 539

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A + A ++D   +             P V             WE    +  +M  +GV  
Sbjct: 540 ALSKAARLDAGPD-------------PNVL------------WEKTQHILGEMHSRGVRQ 574

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS----VGIISYSSLMGACSNAKNWQKA 315
           D    S+ I   G AG+ E A  ++ + K+ G +      I++++S + AC+N+K W  A
Sbjct: 575 DTFTYSSAISVCGSAGRWEEAVRLIHQMKDSGTNGTKRNKIVAFTSAITACANSKQWDPA 634

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            +L++ MK   L P +   NALI A     +  +   +  ++ +  L P+ +T + +L  
Sbjct: 635 NQLFQEMKRDGLAPDLVAFNALIGAGMAAGRPDEVYHLWREIGASNLSPDVVTLTEVLYT 694

Query: 376 CER--------------KDDVEVGLML 388
            ++              KD V +GL+L
Sbjct: 695 LDQARGKANRERAESVFKDAVSLGLVL 721



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/440 (20%), Positives = 182/440 (41%), Gaps = 45/440 (10%)

Query: 160 LITACGQSGAVDRAFDVLAEM----NAEVHP-VDPDHITIGALMKACANAGQVDRAREVY 214
           +IT   + G +  A   L+ M    ++E H  ++P       L+ + A+  Q  +   + 
Sbjct: 317 VITGFSRRGRIRDALSALSRMEGQLDSEHHSNLNPSLSVYQTLLVSLASKQQFSQMNTLL 376

Query: 215 KMIHKYNIKGTPEVYT----IAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALID 269
             + +  ++  P VYT    + +   S++  W  A S+     ++ GV PD +  ++ + 
Sbjct: 377 TSMRRRGVR--PTVYTFNALLKVCASSKSPRWREAVSLLSQCQREPGVSPDIITYTSTMR 434

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                 +   A ++ +  K+ GI + + +Y++ M AC+   NW+KAL+L E M+   + P
Sbjct: 435 ALAKGKQARKALDLFRAMKDTGIQLDVFAYTTTMDACAKTNNWKKALQLLEEMRENNVPP 494

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG---- 385
              T    + A  +G Q    + +L  M   G+  N+ITY+  + A  +   ++ G    
Sbjct: 495 NEVTYGVAVNACGNGGQWQTALSLLQTMNDSGMRINSITYNSAIAALSKAARLDAGPDPN 554

Query: 386 ------LMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL-------------NEH 424
                   +L +    GV  +   +   I +C    R+E+A  L                
Sbjct: 555 VLWEKTQHILGEMHSRGVRQDTFTYSSAISVCGSAGRWEEAVRLIHQMKDSGTNGTKRNK 614

Query: 425 VLSFNSGRPQIEN--KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLV 482
           +++F S      N  +W   A  +++E    G  P +   + ++G        D    L 
Sbjct: 615 IVAFTSAITACANSKQWDP-ANQLFQEMKRDGLAPDLVAFNALIGAGMAAGRPDEVYHLW 673

Query: 483 ENLG---VSADALKRSNLCSLID-GFGEYD-PRAFSLLEEAASFGIVPCVSFKEIPVVVD 537
             +G   +S D +  + +   +D   G+ +  RA S+ ++A S G+V      +     D
Sbjct: 674 REIGASNLSPDVVTLTEVLYTLDQARGKANRERAESVFKDAVSLGLVLRCDSLDTSSEFD 733

Query: 538 ARKLEIHTAKVYLLTILKGL 557
             ++    A+  +L I+K +
Sbjct: 734 LSRMSPSVARFAVLHIMKNI 753


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 181/391 (46%), Gaps = 24/391 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK---SQKAIKEAFRFFKLVPNP 90
           L  +GR  E ++L +    KG    D+V +    N +CK   ++ AI+   +  K    P
Sbjct: 136 LCLKGRTFEALNLYDHAVSKGF-SFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRP 194

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
            L  +NM++  +C     +E       +V + G+  D   Y +LI     +G+       
Sbjct: 195 NLIMYNMVVDGLCKEGLVTEACGLCSEMVGK-GICIDVFTYNSLIHGFCGAGQFQGAVRL 253

Query: 146 -----MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                M E+V+PD   FN L+ A  + G V  A +V   M      ++PD ++  ALM  
Sbjct: 254 LNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKR--GLEPDVVSCNALMNG 311

Query: 201 CANAGQVDRAREVY-KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGV 257
               G +  A+EV+ +M+ +  +   P V  Y+  IN   +    + A  +  +M ++ +
Sbjct: 312 WCLRGCMSEAKEVFDRMVERGKL---PNVISYSTLINGYCKVKMVDEALRLLTEMHQRNL 368

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
           +PD V  + L+D    +G+V   +++++  +  G +  +I+Y+ L+      +   KAL 
Sbjct: 369 VPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALA 428

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L++H+    + P + T N LI  LC G ++    E+   +   G  PN  TY+I++    
Sbjct: 429 LFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLR 488

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           R+  ++    LL +  +DG  PN V F  ++
Sbjct: 489 REGLLDEAEALLLEMVDDGFPPNAVTFDPLV 519



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 139/352 (39%), Gaps = 32/352 (9%)

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A+    R   L P P++ + N L+S    +K                       Y T+++
Sbjct: 39  AVSTFHRMLHLHPPPSIVSLNKLLSSIMKTKH----------------------YPTVVS 76

Query: 136 TCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            C+    +D+     KP  V  +  I +    G +  AF V+A++      VDP   T+ 
Sbjct: 77  LCSH---LDSK-GTPKPSLVTLSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDP--FTLT 130

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            LMK     G+   A  +Y              Y   IN   + G    A  +   M K 
Sbjct: 131 TLMKGLCLKGRTFEALNLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKG 190

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           GV P+ +  + ++D     G V  A  +  E   +GI + + +Y+SL+     A  +Q A
Sbjct: 191 GVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGA 250

Query: 316 LELYEHM-KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           + L   M     ++P V T N L+ ALC    + +   V   M   GL P+ ++ + L+ 
Sbjct: 251 VRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMN 310

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY--EKARTLNE 423
               +  +     +  +  E G +PN++ +  +I G C  +   E  R L E
Sbjct: 311 GWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTE 362



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 68/307 (22%), Positives = 122/307 (39%), Gaps = 29/307 (9%)

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE----VYT 230
           D ++  +  +H   P  I   +L K  ++  +      V  +    + KGTP+      +
Sbjct: 38  DAVSTFHRMLHLHPPPSIV--SLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVTLS 95

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
           I IN  +  G    A SV   + K+G   D   L+ L+      G+   A  +   A ++
Sbjct: 96  IFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSK 155

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G S   + Y +L+         + A+EL   M+   ++P +   N ++  LC    + + 
Sbjct: 156 GFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEA 215

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ--AKEDGVIPNLVMFK--- 405
             + S+M   G+C +  TY+ L+         +  + LL++   KED V P++  F    
Sbjct: 216 CGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKED-VRPDVYTFNILV 274

Query: 406 ---CIIGMCSRRYEK-----ARTLNEHVLSFNSGRPQIENKWTSLALM-----VYREAIV 452
              C +GM +           R L   V+S N+    + N W     M     V+   + 
Sbjct: 275 DALCKLGMVAEARNVFGLMIKRGLEPDVVSCNA----LMNGWCLRGCMSEAKEVFDRMVE 330

Query: 453 AGTIPTV 459
            G +P V
Sbjct: 331 RGKLPNV 337


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 165/357 (46%), Gaps = 32/357 (8%)

Query: 96  NMLMSVCASSK---DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDAMFEN 149
           ++ +SV  S +    SE A +    +Q+  +K   K+Y  ++       +   ++ ++ N
Sbjct: 112 DLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSN 171

Query: 150 VK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           +K     P+   +N L+ A  ++  VD A  +L EM+++    DPD ++   L+ +    
Sbjct: 172 MKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSK--GCDPDEVSYTTLISSLCKL 229

Query: 205 GQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           G+V  ARE+        +  TP V  Y   IN   +   +E A  + D+M  KG+ P+ +
Sbjct: 230 GKVKEAREL-------AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVI 282

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + +I+    AG VE +  +L +   +G S  + +++SL+          +AL+ ++ M
Sbjct: 283 SYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRM 342

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               + P V   NAL+  LC    L   + V + M+  G CPN  TYS L+    +  D+
Sbjct: 343 IREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDL 402

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSGRPQIEN 437
           +    + +     G  PN+V + C++ +  R   + +A  L E++        Q+EN
Sbjct: 403 DGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENM--------QVEN 451



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 154/366 (42%), Gaps = 51/366 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T+N+L+     +   +GA ++L  +   G   D   YTTLI++  K GKV    E 
Sbjct: 179 PNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAREL 238

Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
             +  P   V+NALI    +    + AF +L EM  +   +DP+ I+   ++ A ++AG 
Sbjct: 239 AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNK--GIDPNVISYTTIINALSDAGN 296

Query: 207 VDR---------AREVYKMIHKYN--IKG----------------------TPEVYTIAI 233
           V+          AR     +H +   IKG                       P V  +A 
Sbjct: 297 VELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNV--VAY 354

Query: 234 NC-----CSQT--GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           N      CS+   GD   A SV++ M   G  P+    SALID    AG ++ A E+   
Sbjct: 355 NALMHGLCSKRSLGD---AVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNW 411

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               G    +++Y+ ++        + +A  L E+M+     P   T N  I  LC   +
Sbjct: 412 MITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGR 471

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +   ++V   M + G  PNT TY+ LL +  +         L+   +  G+  NLV +  
Sbjct: 472 VDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNT 531

Query: 407 II-GMC 411
           II G C
Sbjct: 532 IIYGYC 537



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/454 (22%), Positives = 191/454 (42%), Gaps = 55/454 (12%)

Query: 10  QFPYPNGKHANYAHDVSE-QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKV-Y 63
           +F   N  ++N   D  E  + +YN L++      R+     LL +M  KG  D D+V Y
Sbjct: 161 RFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGC-DPDEVSY 219

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
                ++CK  K +KEA R   +   P++  +N L++        E AFQ+L  +   G+
Sbjct: 220 TTLISSLCKLGK-VKEA-RELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGI 277

Query: 124 KADCKLYTTLITTCAKSGKVD-------AMF----------------------------- 147
             +   YTT+I   + +G V+        MF                             
Sbjct: 278 DPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALD 337

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                  E V P+ V +NAL+       ++  A  V  +M  E++   P+  T  AL+  
Sbjct: 338 FWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQM--EINGCCPNVRTYSALIDG 395

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A AG +D A EV+  +  +        YT  ++   +   +  A  + ++M  +   P+
Sbjct: 396 YAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPN 455

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  +  I     +G+V+ A ++  +  N G      +Y+ L+ +    + + +A  L +
Sbjct: 456 TVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVK 515

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+   ++  + T N +I   C    L + +E+L  M   G  P+ IT +I++ A  ++ 
Sbjct: 516 DMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQG 575

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
            V + + L+ +       P+++ +  +I G+C+ 
Sbjct: 576 KVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTH 609



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 140/339 (41%), Gaps = 23/339 (6%)

Query: 21  YAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           +A   S  LH++  LI+    +G   E +D  + M R+G++     Y+A    +C S+++
Sbjct: 308 FARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLC-SKRS 366

Query: 77  IKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           + +A   F  +      P + T++ L+   A + D +GA +V   +   G   +   YT 
Sbjct: 367 LGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTC 426

Query: 133 LITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           ++    ++   +  +        EN  P+ V FN  I     SG VD A  V  +M    
Sbjct: 427 MVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNS- 485

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGDW 242
               P+  T   L+ +     +   A  + K +    I+     Y   I   CC+  G  
Sbjct: 486 -GCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCA--GML 542

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
             A  +   M  +G  PD + ++ +ID     GKV  A +++           II+Y+SL
Sbjct: 543 GEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSL 602

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           +         ++A+     M S  + P V+T N L+  L
Sbjct: 603 ISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 13/256 (5%)

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +LQ+ K +GIS     + S++G+   A + ++AL+ +  M+  ++KPTV   N ++ AL 
Sbjct: 98  LLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALL 157

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
           D ++      + S+MK  G+ PN  TY+ILL A  + + V+    LL +    G  P+ V
Sbjct: 158 DENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEV 217

Query: 403 MFK------CIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWT-SLALMVYREAIVAGT 455
            +       C +G      E A +    V  +N+    +  ++T   A  +  E +  G 
Sbjct: 218 SYTTLISSLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGI 277

Query: 456 IPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF----GEYDPRA 511
            P V   + ++  L    N ++   ++  +     +       SLI GF    G ++  A
Sbjct: 278 DPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHE--A 335

Query: 512 FSLLEEAASFGIVPCV 527
               +     G+VP V
Sbjct: 336 LDFWDRMIREGVVPNV 351



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 81/178 (45%), Gaps = 1/178 (0%)

Query: 197 LMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           ++K   +   +  A E +K I +  + K TP  Y + I   +   + +    +   M  +
Sbjct: 46  VLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLE 105

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G+   E    ++I     AG  E A +     ++  +   +  Y+ ++ A  +   +Q  
Sbjct: 106 GISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMI 165

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             +Y +MK   ++P V T N L+ ALC  +++    ++L +M S G  P+ ++Y+ L+
Sbjct: 166 NPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLI 223


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 179/395 (45%), Gaps = 52/395 (13%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFN 96
           + + +++L  M + G++     Y++     C S++  KEA  F K + +    P + T+N
Sbjct: 247 MDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQP-KEAIGFLKKMRSDGVEPDVVTYN 305

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAMFEN 149
            LM     +  S  A ++   + + GL+ D   Y TL+   A  G +       D M  N
Sbjct: 306 SLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRN 365

Query: 150 -VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            + PD  VFN LI A  +   VD A  V ++M    H ++P+ +T GA++     +G VD
Sbjct: 366 GIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQ--HGLNPNVVTYGAVIGILCKSGSVD 423

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A     M++                              ++ M  +G+ P+ +  ++LI
Sbjct: 424 DA-----MLY------------------------------FEQMIDEGLTPNIIVYTSLI 448

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                  K + A E++ E  ++GI +  I ++S++ +        ++ +L++ M  I +K
Sbjct: 449 HSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVK 508

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P V T + LI   C   ++ +  ++LS M S+G+ P+ +TY+ L+    R   ++  L L
Sbjct: 509 PNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALAL 568

Query: 389 LSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 421
             +    GV PN++ +  I+     +RR   A+ L
Sbjct: 569 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 603



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 103/476 (21%), Positives = 207/476 (43%), Gaps = 86/476 (18%)

Query: 130 YTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y  LI  C ++G++D  F        +  + + + F  L+           A D++    
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQ 238
            E+  + PD  +   L+K   +  +   A E+  M+      G+ P+V  YT  IN   +
Sbjct: 150 TELSCM-PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFK 208

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            GD + A S Y +M  + + PD V  S++I        ++ A E+L      G+    ++
Sbjct: 209 EGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMT 268

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y+S++    +++  ++A+   + M+S  ++P V T N+L+  LC   +  +  ++   M 
Sbjct: 269 YNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMT 328

Query: 359 SLGLCPNTITY-----------------------------------SILLVACERKDDVE 383
             GL P+  TY                                   +IL+ A  +++ V+
Sbjct: 329 KRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVD 388

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLA 443
             +++ S+ ++ G+ PN+V +  +IG+      K+ ++++ +L F     Q+ ++  +  
Sbjct: 389 EAMLVFSKMRQHGLNPNVVTYGAVIGILC----KSGSVDDAMLYFE----QMIDEGLTPN 440

Query: 444 LMVYREAIVAGTI-----PTVEVVSKVLG---CLQ-LPYNADIRE-----RLVEN----- 484
           ++VY   I +  I        E++ ++L    CL  + +N+ I       R++E+     
Sbjct: 441 IIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFD 500

Query: 485 ----LGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP-CVSFKEI 532
               +GV  + +  S   +LIDG+   G+ D  A  LL    S G+ P CV++  +
Sbjct: 501 LMVRIGVKPNVITYS---TLIDGYCLAGKMD-EATKLLSSMFSVGMKPDCVTYNTL 552



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/391 (20%), Positives = 171/391 (43%), Gaps = 19/391 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    + GR +E   + + M ++GL + D   +        ++ A+ E      L
Sbjct: 303 TYNSLMDYLCKNGRSTEARKIFDSMTKRGL-EPDIATYCTLLQGYATKGALVEMHALLDL 361

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     +P    FN+L+   A  +  + A  V   +++ GL  +   Y  +I    KSG 
Sbjct: 362 MVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGS 421

Query: 143 VD-AMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           VD AM        E + P+ +V+ +LI +       D+A +++ EM      +  + I  
Sbjct: 422 VDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDR--GICLNTIFF 479

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +++ +    G+V  + +++ ++ +  +K     Y+  I+     G  + A  +   M  
Sbjct: 480 NSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFS 539

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G+ PD V  + LI+      +++ A  + +E  + G+S  II+Y+ ++    + +    
Sbjct: 540 VGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAA 599

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ELY  +     +  +ST N ++  LC  +   + + +  ++    L   T T++I++ 
Sbjct: 600 AKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIG 659

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           A  +    +    L      +G++PN   ++
Sbjct: 660 ALLKVGRNDEAKDLFVAFSSNGLVPNYWTYR 690


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 173/396 (43%), Gaps = 16/396 (4%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV+    + + L +  RI E   L++ M  +G       Y      +C+  K + EA   
Sbjct: 304 DVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGK-VDEARML 362

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGK 142
              VPNP +  FN L++   S    + A  V+   +   G   D   Y TLI    K G 
Sbjct: 363 LNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGY 422

Query: 143 V--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +        +   +  +P+ + +  LI    + G ++ A +VL EM+ +   ++   +  
Sbjct: 423 LVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNA--VGY 480

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDM 252
             L+ A     +V  A  ++  +     K  P+++T    I    +   +E A  +Y DM
Sbjct: 481 NCLISALCKDEKVQDALNMFGDMSSKGCK--PDIFTFNSLIFGLCKVNKFEEALGLYQDM 538

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             +GVI + +  + LI      G ++ A +++ +   +G  +  I+Y+ L+ A   A N 
Sbjct: 539 LLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNI 598

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +K L L+E M S  L P   + N LI  LC    +   +E L DM   GL P+ +TY+ L
Sbjct: 599 EKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSL 658

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +    +    +  L L  + + +G+ P+ + +  +I
Sbjct: 659 INGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLI 694



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 137/305 (44%), Gaps = 16/305 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DA--M 146
           P + T+ +L+         E A  VL  +   GL  +   Y  LI+   K  KV DA  M
Sbjct: 440 PNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNM 499

Query: 147 FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F ++     KPD   FN+LI    +    + A  +  +M  E   V  + IT   L+ A 
Sbjct: 500 FGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLE--GVIANTITYNTLIHAF 557

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              G +   +E  K+++    +G P     Y   I    + G+ E   ++++DM  KG+ 
Sbjct: 558 LRRGAM---QEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLN 614

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+ +  + LI+     G ++ A E L++  ++G++  I++Y+SL+         Q+AL L
Sbjct: 615 PNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNL 674

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++ ++   + P   T N LI+  C          +LS     G  PN +T+ IL+    +
Sbjct: 675 FDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIK 734

Query: 379 KDDVE 383
           + D E
Sbjct: 735 EGDQE 739



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 92/383 (24%), Positives = 159/383 (41%), Gaps = 33/383 (8%)

Query: 56  LLDMDKVYHA----RFFNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMS 100
           LLDM  VY      R +NV      +  A    K+VPN           PT+ TF ++M 
Sbjct: 187 LLDMRGVYSCEPTFRSYNVVLD---VLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMK 243

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK--------P 152
                 + + A  +L+ +   G   +  +Y TLI   +K G+V+ + + ++        P
Sbjct: 244 ALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIP 303

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D   FN  I    +   +  A  ++  M   +    P+  T G LM      G+VD AR 
Sbjct: 304 DVNTFNDAIHGLCKMLRIHEAAKLVDRM--LLRGFTPNSFTYGVLMHGLCRMGKVDEARM 361

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV-YDDMTKKGVIPDEVFLSALIDFA 271
           +   +   N+     ++   IN     G  + A +V ++ M   G  PD    + LI   
Sbjct: 362 LLNKVPNPNVV----LFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGL 417

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G + +A E++ E + +G    +I+Y+ L+         ++A  + + M    L    
Sbjct: 418 CKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNA 477

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
              N LI+ALC  +++   + +  DM S G  P+  T++ L+    + +  E  L L   
Sbjct: 478 VGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQD 537

Query: 392 AKEDGVIPNLVMFKCIIGMCSRR 414
              +GVI N + +  +I    RR
Sbjct: 538 MLLEGVIANTITYNTLIHAFLRR 560



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 144/327 (44%), Gaps = 29/327 (8%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + + P    F  ++ A      VD A  +L +M    H   P+ I    L+ A +  G+V
Sbjct: 229 KGISPTVYTFGVVMKALCLVNEVDSACALLKDMTR--HGCVPNAIVYQTLIHALSKVGRV 286

Query: 208 DRAREVYKMIHKYNIKG-TPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           +   EV K++ +  + G  P+V T   AI+   +      A  + D M  +G  P+    
Sbjct: 287 N---EVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTY 343

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMK 323
             L+      GKV+ A  +L +  N  +    + +++L+ G  S  +  +    ++E M 
Sbjct: 344 GVLMHGLCRMGKVDEARMLLNKVPNPNV----VLFNTLINGYVSRGRLDEAKAVMHESML 399

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           S+   P + T N LI  LC    L    E++++M+  G  PN ITY+IL+    ++  +E
Sbjct: 400 SVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLE 459

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN-----------EHVLSFNS-- 430
               +L +    G+  N V + C+I    +  +    LN             + +FNS  
Sbjct: 460 EARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLI 519

Query: 431 -GRPQIENKWTSLALMVYREAIVAGTI 456
            G  ++ NK+   AL +Y++ ++ G I
Sbjct: 520 FGLCKV-NKFEE-ALGLYQDMLLEGVI 544



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 127/284 (44%), Gaps = 11/284 (3%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVY 214
           V+  LI   G +G       +L +M  E   V  + + I  +MK    AG   +A R + 
Sbjct: 131 VYYMLIDKLGAAGEFKTTDALLMQMKQE-GIVFRESLFI-LIMKHYGRAGLPGQATRLLL 188

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
            M   Y+ + T   Y + ++        +   +V+ +M  KG+ P       ++      
Sbjct: 189 DMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLV 248

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
            +V++A  +L++    G     I Y +L+ A S      + L+L E M  +   P V+T 
Sbjct: 249 NEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTF 308

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N  I  LC   ++ +  +++  M   G  PN+ TY +L+    R   V+   MLL++   
Sbjct: 309 NDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN 368

Query: 395 DGVIPNLVMFKCII-GMCSR-RYEKAR-TLNEHVLSFNSGRPQI 435
               PN+V+F  +I G  SR R ++A+  ++E +LS   G P I
Sbjct: 369 ----PNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCG-PDI 407



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 89/204 (43%), Gaps = 4/204 (1%)

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           +VY + I+     G+++   ++   M ++G++  E     ++   G AG    A  +L +
Sbjct: 130 DVYYMLIDKLGAAGEFKTTDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQATRLLLD 189

Query: 287 AKN-QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
            +          SY+ ++         +    ++  M S  + PTV T   ++ ALC  +
Sbjct: 190 MRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFGVVMKALCLVN 249

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           ++     +L DM   G  PN I Y  L+ A  +   V   L LL +    G IP++  F 
Sbjct: 250 EVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFN 309

Query: 406 -CIIGMCS--RRYEKARTLNEHVL 426
             I G+C   R +E A+ ++  +L
Sbjct: 310 DAIHGLCKMLRIHEAAKLVDRMLL 333


>gi|357153642|ref|XP_003576519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Brachypodium distachyon]
          Length = 620

 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 155/331 (46%), Gaps = 11/331 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAM 146
           P+L T+N L++ C    D   A++V   +    +  +   Y+T+I    + G V   + +
Sbjct: 158 PSLVTYNTLVNACRHEGDMTKAWEVWNQMVARRIDPNVVTYSTMICVLCEEGCVIEAERL 217

Query: 147 F-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F       V+P+   +NAL+++  +   V+R   +  E+      + P+ + I  L+   
Sbjct: 218 FIMMKETGVQPNLYTYNALMSSHCKRDGVNRTLTLYQELLKS--GLVPNAVIITTLIGGF 275

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             A ++   +  +  +H+Y I  T  VY   I+   ++G  + A +VY DMT+ G+ PDE
Sbjct: 276 FLANRISDVKNAFLEMHRYGIAPTVPVYNSLIDGAFRSGYAQEALTVYQDMTRVGLCPDE 335

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              S ++      G+V+ A   L+  +  GI++   +Y++L+       N  +AL     
Sbjct: 336 FTCSIIVRGLCCGGQVQVATRFLELMQQSGINLNAAAYNALIDEHCKDGNLAEALATCTR 395

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M  + ++P V T ++LI       ++   M +  +M + G+ PN +TY+ ++    +  D
Sbjct: 396 MNEVGIEPNVVTYSSLIDGHSKKRKMEIAMGIYMEMVAKGVEPNVLTYTAMIHGHAKFGD 455

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           ++    L  +  E G+  N +    ++ G+C
Sbjct: 456 LDAAFRLHKEMAEKGISSNAITVSVLVDGLC 486



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 124/266 (46%), Gaps = 8/266 (3%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P  V +N L+ AC   G + +A++V  +M A    +DP+ +T   ++      G V  A 
Sbjct: 158 PSLVTYNTLVNACRHEGDMTKAWEVWNQMVAR--RIDPNVVTYSTMICVLCEEGCVIEAE 215

Query: 212 EVYKMIHKYNIKGTPEVYT---IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            ++ M+ +  ++  P +YT   +  + C + G      ++Y ++ K G++P+ V ++ LI
Sbjct: 216 RLFIMMKETGVQ--PNLYTYNALMSSHCKRDG-VNRTLTLYQELLKSGLVPNAVIITTLI 272

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                A ++        E    GI+  +  Y+SL+     +   Q+AL +Y+ M  + L 
Sbjct: 273 GGFFLANRISDVKNAFLEMHRYGIAPTVPVYNSLIDGAFRSGYAQEALTVYQDMTRVGLC 332

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P   T + ++  LC G Q+      L  M+  G+  N   Y+ L+    +  ++   L  
Sbjct: 333 PDEFTCSIIVRGLCCGGQVQVATRFLELMQQSGINLNAAAYNALIDEHCKDGNLAEALAT 392

Query: 389 LSQAKEDGVIPNLVMFKCIIGMCSRR 414
            ++  E G+ PN+V +  +I   S++
Sbjct: 393 CTRMNEVGIEPNVVTYSSLIDGHSKK 418



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 90/173 (52%), Gaps = 3/173 (1%)

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           SQ G  + A SV+  +     +P     +A++D    A + +  +++  E  ++G+   +
Sbjct: 104 SQMGLHDDALSVFCRLPTLPALPA---CNAILDGLVKARRFDRVWKLFDEMLSRGMVPSL 160

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           ++Y++L+ AC +  +  KA E++  M + ++ P V T + +I  LC+   + +   +   
Sbjct: 161 VTYNTLVNACRHEGDMTKAWEVWNQMVARRIDPNVVTYSTMICVLCEEGCVIEAERLFIM 220

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           MK  G+ PN  TY+ L+ +  ++D V   L L  +  + G++PN V+   +IG
Sbjct: 221 MKETGVQPNLYTYNALMSSHCKRDGVNRTLTLYQELLKSGLVPNAVIITTLIG 273



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 87/430 (20%), Positives = 154/430 (35%), Gaps = 80/430 (18%)

Query: 143 VDAMFENVKPDRVVF--------------NALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
           V A F + +P   VF                L+ A  Q G  D A  V   +     P  
Sbjct: 68  VQASFPSARPGGAVFAALSSTSSSPAPALGVLVIALSQMGLHDDALSVFCRL-----PTL 122

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P      A++     A + DR  +++  +    +  +   Y   +N C   GD   A  V
Sbjct: 123 PALPACNAILDGLVKARRFDRVWKLFDEMLSRGMVPSLVTYNTLVNACRHEGDMTKAWEV 182

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           ++ M  + + P+ V  S +I      G V  A  +    K  G+   + +Y++LM +   
Sbjct: 183 WNQMVARRIDPNVVTYSTMICVLCEEGCVIEAERLFIMMKETGVQPNLYTYNALMSSHCK 242

Query: 309 AKNWQKALELYE-----------------------------------HMKSIKLKPTVST 333
                + L LY+                                    M    + PTV  
Sbjct: 243 RDGVNRTLTLYQELLKSGLVPNAVIITTLIGGFFLANRISDVKNAFLEMHRYGIAPTVPV 302

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            N+LI          + + V  DM  +GLCP+  T SI++        V+V    L   +
Sbjct: 303 YNSLIDGAFRSGYAQEALTVYQDMTRVGLCPDEFTCSIIVRGLCCGGQVQVATRFLELMQ 362

Query: 394 EDGVIPNLVMFKCII-------------GMCSRRYEKARTLNEHVLSFNS---GRPQIEN 437
           + G+  N   +  +I               C+R  E    +  +V++++S   G  +   
Sbjct: 363 QSGINLNAAAYNALIDEHCKDGNLAEALATCTRMNEVG--IEPNVVTYSSLIDGHSK--K 418

Query: 438 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKR 494
           +   +A+ +Y E +  G  P V   + ++       + D   RL + +   G+S++A+  
Sbjct: 419 RKMEIAMGIYMEMVAKGVEPNVLTYTAMIHGHAKFGDLDAAFRLHKEMAEKGISSNAITV 478

Query: 495 SNLCSLIDGF 504
           S    L+DG 
Sbjct: 479 S---VLVDGL 485



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 33/232 (14%)

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           ++++     A+ + +  +L++ M S  + P++ T N L+ A      + K  EV + M +
Sbjct: 129 NAILDGLVKARRFDRVWKLFDEMLSRGMVPSLVTYNTLVNACRHEGDMTKAWEVWNQMVA 188

Query: 360 LGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
             + PN +TYS ++ V CE    +E   + +   KE GV PNL  +  ++    +R    
Sbjct: 189 RRIDPNVVTYSTMICVLCEEGCVIEAERLFI-MMKETGVQPNLYTYNALMSSHCKRDGVN 247

Query: 419 RTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYN-ADI 477
           RTL                        +Y+E + +G +P   +++ ++G   L    +D+
Sbjct: 248 RTLT-----------------------LYQELLKSGLVPNAVIITTLIGGFFLANRISDV 284

Query: 478 RERLVE--NLGVSADALKRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIVP 525
           +   +E    G+ A  +   N  SLIDG     Y   A ++ ++    G+ P
Sbjct: 285 KNAFLEMHRYGI-APTVPVYN--SLIDGAFRSGYAQEALTVYQDMTRVGLCP 333



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 80/391 (20%), Positives = 161/391 (41%), Gaps = 36/391 (9%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKSQKAIK 78
           V   L++YN L+    ++  ++  + L +++ + GL+    +       F +      +K
Sbjct: 226 VQPNLYTYNALMSSHCKRDGVNRTLTLYQELLKSGLVPNAVIITTLIGGFFLANRISDVK 285

Query: 79  EAF-RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-- 135
            AF    +    PT+  +N L+     S  ++ A  V + +   GL  D +   ++I   
Sbjct: 286 NAFLEMHRYGIAPTVPVYNSLIDGAFRSGYAQEALTVYQDMTRVGLCPD-EFTCSIIVRG 344

Query: 136 -TCAKSGKVDAMF------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             C    +V   F        +  +   +NALI    + G +  A      MN EV  ++
Sbjct: 345 LCCGGQVQVATRFLELMQQSGINLNAAAYNALIDEHCKDGNLAEALATCTRMN-EV-GIE 402

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ +T  +L+   +   +++ A  +Y  +    ++     YT  I+  ++ GD + A  +
Sbjct: 403 PNVVTYSSLIDGHSKKRKMEIAMGIYMEMVAKGVEPNVLTYTAMIHGHAKFGDLDAAFRL 462

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           + +M +KG+  + + +S L+D      +V+ A   + +   Q     I S+      CSN
Sbjct: 463 HKEMAEKGISSNAITVSVLVDGLCRESRVQDAVMFIMKYAGQKKPGDINSF------CSN 516

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                     Y   +   +  +V+ M  +     DG Q  +  +  S M+   + P++ T
Sbjct: 517 ----------YTTEEDCSILNSVTYMTLIYGLYIDG-QYHEAGKFFSCMRESDMVPDSFT 565

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
           YS+L+        V   +ML +   + GV P
Sbjct: 566 YSLLIRGQCMLGYVLNAMMLYADMVKIGVKP 596


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 154/333 (46%), Gaps = 14/333 (4%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            L+TFN+ ++    +     A   +  ++  G+  +   Y TL+    K G    M++  
Sbjct: 199 NLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAE 258

Query: 149 ---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                     + P+ V FN LI    +   V  A     EM  +   + P+ +T  +L+ 
Sbjct: 259 AFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQ--GLKPNIVTYNSLIN 316

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              N G+++ A +++  +    +K     Y   IN   +    + A  V+DD++K+ ++P
Sbjct: 317 GLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVP 376

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + +  + +ID     G +E  F +     ++GI   + +Y+ L+      ++ Q A EL 
Sbjct: 377 NVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELL 436

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M++  LK  V T N LI  LC  D+     ++L++M +LGL PN +TY+ L+     +
Sbjct: 437 NEMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCME 496

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             ++  L + ++ +++   PN+V +  +I G C
Sbjct: 497 GKLKAALNVRTRMEKERKQPNVVTYNVLIKGYC 529



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 152/337 (45%), Gaps = 45/337 (13%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK---ADCKLYTTLITTCAKSGKVD 144
           P  T    +ML+     + +   A++     ++ G K     C    + +    K G V+
Sbjct: 126 PGATALIIDMLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVE 185

Query: 145 AMFENVKPDRV-----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            +++ +   R+      FN  I    ++G +++A D + +M A    + P+ +T   L+ 
Sbjct: 186 YVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKA--WGISPNVVTYNTLVD 243

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G    A ++YK                             A +   +M    + P
Sbjct: 244 GYCKRGS---AGKMYK-----------------------------AEAFMKEMLANKICP 271

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALEL 318
           +EV  + LID       V AA +  +E + QG+   I++Y+SL+ G C+N K  ++A++L
Sbjct: 272 NEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGK-LEEAIDL 330

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++ M  + LKP + T NALI   C    + +  +V  D+    L PN IT++ ++ A  +
Sbjct: 331 WDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCK 390

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
           +  +E G  L S   ++G++PN+  + C+I G+C ++
Sbjct: 391 EGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQ 427



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 156/357 (43%), Gaps = 22/357 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK----EAFR----FF 84
           N L R G++++  D +EDM+  G+      Y+      CK   A K    EAF       
Sbjct: 208 NGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLAN 267

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           K+ PN    TFN L+      ++   A +    +Q+ GLK +   Y +LI     +GK++
Sbjct: 268 KICPNEV--TFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLE 325

Query: 145 AMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
              +         +KP+ V +NALI    +   +  A  V  +++ +   + P+ IT   
Sbjct: 326 EAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQ--ELVPNVITFNT 383

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ A    G ++    +   +    I      Y   I    +  D + A  + ++M  KG
Sbjct: 384 MIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKG 443

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKA 315
           +  D V  + LID      K   A ++L E  N G+    ++Y++LM G C   K  + A
Sbjct: 444 LKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGK-LKAA 502

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           L +   M+  + +P V T N LI   C  ++L     +L++M   GL PN  TY I+
Sbjct: 503 LNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIV 559


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 158/357 (44%), Gaps = 15/357 (4%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL----ST 94
           GR+   + L+ +M  + L   D V  A    +CK  K  +EA   + LV    L    +T
Sbjct: 406 GRLDVVLRLIREMVARFLKPNDAVMTACIQELCKRGKH-EEAAEIWFLVLGKGLGVNIAT 464

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAM 146
            N L+       + + A +VL+ + ++G++ D   Y  +I  C K+ K+        D +
Sbjct: 465 SNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMI 524

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
               KPD   FN  + A    G V+    +L +M +E   + PD +T G ++     A  
Sbjct: 525 KRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSE--GLKPDIVTYGTIIDGYCKAKD 582

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           V +A +    + K  ++    +Y   I    + G    A  V D M   G+ P  +  ++
Sbjct: 583 VHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNS 642

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           L+ +  HAG VE A EI  +   + I +G+I Y+ ++          +A+  ++ M    
Sbjct: 643 LMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRD 702

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           ++P   T   L+ A C      +  ++  +M S G+ P+T++Y+ L+  C   D ++
Sbjct: 703 IRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPDTVSYNTLISGCCEVDSLD 759



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 182/405 (44%), Gaps = 26/405 (6%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  +++Y  +I    R G I     +L ++ER G+      Y+     +C+S + ++EA
Sbjct: 212 VAPDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGR-VEEA 270

Query: 81  F----RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F    R  +    P++ TF +L++  A  +       VL+ ++  G+  +  +Y  LI  
Sbjct: 271 FQLKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGW 330

Query: 137 CAKSGK-------VDAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM---NAEVH 185
             + G         D M  + +K   V +N +  A  + G ++ A  +L EM      VH
Sbjct: 331 HCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVH 390

Query: 186 PVDPDHITIGALMKACANAGQVDRA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
               + +    L       G++D   R + +M+ ++ +K    V T  I    + G  E 
Sbjct: 391 CSLFNSVVAWHLR----GTGRLDVVLRLIREMVARF-LKPNDAVMTACIQELCKRGKHEE 445

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  ++  +  KG+  +    +ALI        ++ A ++L+   + G+    I+Y+ ++ 
Sbjct: 446 AAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQ 505

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
            C  A   ++A++L + M     KP + T N  + A C+  ++   + +L  MKS GL P
Sbjct: 506 FCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKP 565

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           + +TY  ++    +  DV      L +  ++G+ PN V++  +IG
Sbjct: 566 DIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIG 610



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 133/302 (44%), Gaps = 15/302 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF----FKLVPNP 90
           L +   + E   +L+ M   G+ + D++ +      C     ++EA +      K    P
Sbjct: 472 LCQGNNMKEATKVLKAMVDSGV-EFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKP 530

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
            L TFN  +    +    E    +L  ++  GLK D   Y T+I    K+  V       
Sbjct: 531 DLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYL 590

Query: 144 -DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
            + +   ++P+ V++NALI   G++G++  A  VL  M    + + P  IT  +LM    
Sbjct: 591 IELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKH--NGIQPTPITYNSLMYWMC 648

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           +AG V+ A+E++      NI+     YTI I    + G  + A   + +M  + + P+++
Sbjct: 649 HAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKM 708

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L+      G  E AF++  E  + GI    +SY++L+  C    +  K +E    M
Sbjct: 709 TYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPDTVSYNTLISGCCEVDSLDKIVESPAEM 768

Query: 323 KS 324
            S
Sbjct: 769 SS 770



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/286 (25%), Positives = 129/286 (45%), Gaps = 4/286 (1%)

Query: 136 TCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +CA    ++       P     N L+ A G  G +D A  V  EM  + + V PD  T  
Sbjct: 162 SCAADAFLELSTRGASPSIKTCNILVEALGCGGQLDLARKVFGEMR-DGNAVAPDVYTYT 220

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++KA   AG++D A  +   + +  I+ T   Y + ++   ++G  E A  +   M + 
Sbjct: 221 VMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMVEG 280

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + P  V    LI+      +      +LQE +  GI+   + Y+ L+G      +  +A
Sbjct: 281 RLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCSEA 340

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLV 374
           L L++ M S  +K TV T N +  ALC   ++    ++L +M   G+  + ++  S++  
Sbjct: 341 LRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAW 400

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPN-LVMFKCIIGMCSR-RYEKA 418
                  ++V L L+ +     + PN  VM  CI  +C R ++E+A
Sbjct: 401 HLRGTGRLDVVLRLIREMVARFLKPNDAVMTACIQELCKRGKHEEA 446



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 4/219 (1%)

Query: 193 TIGALMKACANA---GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           T   L++AC N+   G +  A + +  +       + +   I +      G  + A  V+
Sbjct: 144 TADLLVRACLNSPAPGSLSCAADAFLELSTRGASPSIKTCNILVEALGCGGQLDLARKVF 203

Query: 250 DDMTK-KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            +M     V PD    + +I     AG+++AAF +L E +  GI   +++Y+ LM A   
Sbjct: 204 GEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCR 263

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           +   ++A +L   M   +L+P++ T   LI  L  G +  +   VL +M+  G+ PN + 
Sbjct: 264 SGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVI 323

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
           Y+ L+    R+      L L  +    G+   +V +  I
Sbjct: 324 YNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLI 362



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 78/365 (21%), Positives = 141/365 (38%), Gaps = 47/365 (12%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMF 147
           +P++ T N+L+         + A +V   +++    A D   YT +I    ++G++DA F
Sbjct: 177 SPSIKTCNILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAF 236

Query: 148 --------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                     ++P  V +N L+ A  +SG V+ AF +   M      + P  +T G L+ 
Sbjct: 237 VMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMVE--GRLRPSIVTFGILIN 294

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
             A   +      V + +  + I     +Y   I    + G    A  ++D+M  KG+  
Sbjct: 295 GLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQ 354

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG-ACSNAKNWQKALEL 318
             V  + +       G++E A +IL E    G++V    ++S++             L L
Sbjct: 355 TVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRL 414

Query: 319 YEHMKSIKLKPTVSTMNALIT-----------------------------------ALCD 343
              M +  LKP  + M A I                                     LC 
Sbjct: 415 IREMVARFLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQ 474

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
           G+ + +  +VL  M   G+  + ITY+I++  C +   +E  + L     + G  P+L  
Sbjct: 475 GNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFT 534

Query: 404 FKCII 408
           F   +
Sbjct: 535 FNTFL 539


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 154/356 (43%), Gaps = 12/356 (3%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS-SKDSEGAFQVLRLVQE 120
           + HA +    K +KAI    R  ++ P+PTL T+N+++ V     +       VL  ++ 
Sbjct: 223 ILHA-YSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEEMRS 281

Query: 121 AGLKADCKLYTTLITTCAKSG---KVDAMFENVK-----PDRVVFNALITACGQSGAVDR 172
            GLK D    +T+++ CA+ G   +    F  +K     P  V +NAL+   G++G    
Sbjct: 282 KGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTE 341

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
           A  VL EM     P   D +T   L+ A A AG    A  V +M+ +  +      YT  
Sbjct: 342 ALSVLKEMEENNCPA--DSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTV 399

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           I+   + G  + A  ++  M + G +P+    +A++   G   +     ++L + K+ G 
Sbjct: 400 IDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGC 459

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
                ++++++  C N    +    ++  MKS   +P   T N LI+A           +
Sbjct: 460 FPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASK 519

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +  +M   G      TY+ LL A  RK D   G  ++S  K  G  P    +  ++
Sbjct: 520 MYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLML 575



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/446 (21%), Positives = 180/446 (40%), Gaps = 61/446 (13%)

Query: 26  SEQLHSYNRLI----RQGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           S  L +YN ++    + GR   + + +LE+M  KGL   D+   +   + C  +  ++EA
Sbjct: 249 SPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGL-KFDEFTCSTVLSACAREGLLREA 307

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             FF  + +    P   T+N L+ V   +     A  VL+ ++E    AD   Y  L+  
Sbjct: 308 KDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAA 367

Query: 137 CAKSG-------KVDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
            A++G        ++ M +  V P+ + +  +I A G++G  D A  +   M  E   V 
Sbjct: 368 YARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMK-EAGCV- 425

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFA 245
           P+  T  A++   +  G+  R+ E+ KM+      G       +   +  C   G  +F 
Sbjct: 426 PNTCTYNAVL---SMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGMDKFV 482

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             V+ +M   G  PD    + LI   G  G    A ++  E    G +  + +Y++L+ A
Sbjct: 483 NRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNA 542

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT----------------ALCDGDQLPK 349
            +   +W+    +   MKS   KPT ++ + ++                  + +G   P 
Sbjct: 543 LARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEEGINEGQIFPS 602

Query: 350 TM-------------------EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
            M                      +  K  G  P+ + ++ +L    R +  +    +L 
Sbjct: 603 WMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQ 662

Query: 391 QAKEDGVIPNLVMFKCIIGMCSRRYE 416
              EDG+ P+LV +  ++ M  RR E
Sbjct: 663 SIHEDGLNPDLVTYNSLMDMYVRRGE 688



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 137/310 (44%), Gaps = 14/310 (4%)

Query: 126 DCKLYTTLITTCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRA-FDV 176
           D + YTT++   +++GK +    +FE +K     P  V +N ++   G+ G   R    V
Sbjct: 216 DVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGV 275

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
           L EM ++   +  D  T   ++ ACA  G +  A++ +  +     +     Y   +   
Sbjct: 276 LEEMRSK--GLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVF 333

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            + G +  A SV  +M +     D V  + L+     AG  + A  +++    +G+    
Sbjct: 334 GKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNA 393

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           I+Y++++ A   A    +AL+L+  MK     P   T NA+++ L    +  + +++L D
Sbjct: 394 ITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCD 453

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSR 413
           MKS G  PN  T++ +L  C  K   +    +  + K  G  P+   F  +I   G C  
Sbjct: 454 MKSNGCFPNRATWNTILALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGS 513

Query: 414 RYEKARTLNE 423
             + ++   E
Sbjct: 514 EVDASKMYGE 523



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 102/458 (22%), Positives = 180/458 (39%), Gaps = 68/458 (14%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R G   E   ++E M +KG++     Y        K+ K   EA + F  
Sbjct: 360 TYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKE-DEALKLFYS 418

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T+N ++S+      S    ++L  ++  G   +   + T++  C   G 
Sbjct: 419 MKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKGM 478

Query: 143 ---VDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEM-----NAEVHPVDP 189
              V+ +F  +K     PDR  FN LI+A G+ G+   A  +  EM     NA V     
Sbjct: 479 DKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACV----- 533

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW------- 242
              T  AL+ A A  G       V   +     K T   Y++ + C ++ G++       
Sbjct: 534 --TTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIE 591

Query: 243 ---------------------EFACSV-------YDDMTKKGVIPDEVFLSALIDFAGHA 274
                                 F C         +    K G  PD V  ++++      
Sbjct: 592 EGINEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRN 651

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
              + A  ILQ     G++  +++Y+SLM          KA E+ + ++  +LKP + + 
Sbjct: 652 NMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSY 711

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLMLLSQAK 393
           N +I   C    + + + +LS+M   G+ P   TY+  +          E+  ++   AK
Sbjct: 712 NTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAK 771

Query: 394 EDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFN 429
            D   PN + FK ++ G C + +Y +A      + +F+
Sbjct: 772 ND-CRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFD 808



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 138/298 (46%), Gaps = 9/298 (3%)

Query: 119 QEAGLKADCKLYTTLITTCAKSG--KVDAMFENVKPDRVVFN--ALITACGQSGAVDRA- 173
           ++  LK  CK    L+ +  +    ++ + F++VK + +  +  +L+     SG  +RA 
Sbjct: 104 RDGSLKLLCKKEVVLVNSIVEQPLPRLSSFFDSVKSELLTTDLVSLVKGLDDSGHWERAV 163

Query: 174 --FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
             F+ L  +++    +  DH  I  L++      Q   A ++   I   +       YT 
Sbjct: 164 FLFEWLV-LSSNSGALKLDHHVIEILVRILGRESQYSVAAKLLDKIPLQDYMLDVRAYTT 222

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFEILQEAKNQ 290
            ++  S+TG +E A ++++ M + G  P  V  + ++D  G  G+       +L+E +++
Sbjct: 223 ILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSK 282

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G+     + S+++ AC+     ++A + +  +KS   +P   T NAL+          + 
Sbjct: 283 GLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEA 342

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + VL +M+      +++TY+ L+ A  R    +   +++    + GV+PN + +  +I
Sbjct: 343 LSVLKEMEENNCPADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVI 400



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/286 (18%), Positives = 114/286 (39%), Gaps = 16/286 (5%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDA 145
           N  ++T+N L++  A   D      V+  ++  G K     Y+ ++   AK G    ++ 
Sbjct: 530 NACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIER 589

Query: 146 MFENVK-----PDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
           + E +      P  ++   L+ A   C      +RAF +  +     H   PD +   ++
Sbjct: 590 IEEGINEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKK-----HGYKPDMVIFNSM 644

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +         D+A  + + IH+  +      Y   ++   + G+   A  +   + K  +
Sbjct: 645 LSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQL 704

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD V  + +I      G ++ A  +L E   +GI   I +Y++ +   +    + +  +
Sbjct: 705 KPDLVSYNTVIKGFCRKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMYGEIED 764

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
           + E M     +P   T   ++   C   +  + M+ +S +K+   C
Sbjct: 765 VIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPC 810


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 141/320 (44%), Gaps = 15/320 (4%)

Query: 70  VCKSQKAIKEAFRFFKLVPNPT-----LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           V K QK    A +FF            + T+  ++ +   +++ E   ++L+ ++  G +
Sbjct: 40  VLKHQKESGLALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCE 99

Query: 125 ADCKLYTTLITTCAKS---GKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDV 176
                Y  LI    ++   G+   +F     E   PDRV +  L+    ++G  D A D+
Sbjct: 100 PCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDM 159

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
             +M        PD  T   ++     AG+V  A ++++ + +     +   Y I I+  
Sbjct: 160 YQKMQQA--GFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQ 217

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           +++G++  A  +Y+DM   G  PD V  S +++  G  G ++ A  +  E +  G     
Sbjct: 218 AKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDA 277

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
             Y  ++     A+N ++ALE Y+ M    L P V   N+L+ +     Q      V+  
Sbjct: 278 PIYGVMVDMWGKARNAERALEWYQKMLDSGLTPNVQISNSLLGSYLRMQQFDLAFGVIET 337

Query: 357 MKSLGLCPNTITYSILLVAC 376
           MK+ GL P   T++ILL +C
Sbjct: 338 MKAWGLVPTLQTHTILLSSC 357



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 102/223 (45%), Gaps = 23/223 (10%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  ++  M ++G  PD V    L+D    AG  + A ++ Q+ +  G      +YS ++ 
Sbjct: 121 AMRIFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIH 180

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
               A    +AL+L+E M      P++ T N +I            M++ +DM+  G  P
Sbjct: 181 CLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHP 240

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 424
           + +TYSI++    +   ++   ++ ++ ++ G +P+  ++  ++ M    + KAR     
Sbjct: 241 DRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDM----WGKAR----- 291

Query: 425 VLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLG 467
               N+ R          AL  Y++ + +G  P V++ + +LG
Sbjct: 292 ----NAER----------ALEWYQKMLDSGLTPNVQISNSLLG 320


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 175/382 (45%), Gaps = 20/382 (5%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSK 106
           L  D+ R  L      ++    ++C + K ++ A    + +P P   T+N +++   +  
Sbjct: 103 LFADIYRLRLPLCTTTFNIMLRHLCATGKPVR-ALELLRQMPRPNAVTYNTVIAGFCARG 161

Query: 107 DSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKV-------DAMFEN--VKPDRVV 156
             + A +V+R ++E  G+  D   Y TLI+   K G++       D M     V P  V+
Sbjct: 162 RVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVM 221

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +NALI      G +D A     +M      +     T   LM A        RA + Y +
Sbjct: 222 YNALIGGYCDVGKLDVALQYREDMVQ--RGIAMTVATYNLLMHALFMDA---RASDAYAV 276

Query: 217 IHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           + +    G +P+V+T  I IN   + G+ + A  V+++M++KGV    V  ++LI     
Sbjct: 277 LEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSR 336

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
            G+V+    +   A  +GI   ++ Y++L+ +     + ++A E+   M+  ++ P   T
Sbjct: 337 KGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMT 396

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            N L+   C   +L +   ++ +M   G+ P+ ++Y+ L+     K D++  L +  +  
Sbjct: 397 YNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMM 456

Query: 394 EDGVIPNLVMFKCII-GMCSRR 414
           + G  P L+ +  +I G+C  R
Sbjct: 457 DKGFNPTLMTYNALIQGLCKIR 478



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 164/369 (44%), Gaps = 21/369 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFK 85
           +YN +I     +GR+   ++++ +M  +G +  DK  +A   +  CK  + +++A + F 
Sbjct: 149 TYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGR-MEDAVKVFD 207

Query: 86  LVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC--- 137
            +       P+   +N L+         + A Q    + + G+      Y  L+      
Sbjct: 208 EMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMD 267

Query: 138 AKSGKVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           A++    A+ E ++     PD   +N LI    + G   +A +V  EM+ +   V    +
Sbjct: 268 ARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQK--GVRATAV 325

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T  +L+   +  GQV     ++ +  K  I+    +Y   IN     GD E A  +  +M
Sbjct: 326 TYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEM 385

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            KK + PD++  + L+      G+++ A  ++ E   +GI   ++SY++L+   S   + 
Sbjct: 386 EKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDI 445

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           + AL + + M      PT+ T NALI  LC   Q      ++ +M + G+ P+  TY  L
Sbjct: 446 KDALRVRDEMMDKGFNPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISL 505

Query: 373 LVACERKDD 381
           +     +D+
Sbjct: 506 IEGLTTEDE 514


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 185/407 (45%), Gaps = 25/407 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   ++G   +      +M  +G+L     Y +    +CK+Q   K       +V N   
Sbjct: 209 NGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVM 268

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------- 142
           P   T+N ++    SS   + A   L+ ++  G++ +   Y++L+    K+G+       
Sbjct: 269 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKI 328

Query: 143 VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGA 196
            D+M +  ++PD   +  L+      GA       L EM+A +     + + PDH     
Sbjct: 329 FDSMTKRGLEPDIATYRTLLQGYATKGA-------LVEMHALLDLMVRNGIQPDHHVFNI 381

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ A A   +VD+A  V+  + ++ +      Y   I+   ++G  + A   ++ M  +G
Sbjct: 382 LICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEG 441

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + P+ +  ++LI       K + A E++ E  ++GI +  I ++S++ +        ++ 
Sbjct: 442 LTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESE 501

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +L++ M  I +KP + T N LI   C   ++ +  ++L+ M S+G+ P+ +TY  L+   
Sbjct: 502 KLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGY 561

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 421
            R   ++  L L  +    GV PN++ +  I+     +RR   A+ L
Sbjct: 562 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 608



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 156/335 (46%), Gaps = 22/335 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           PT+ T+ +L+  C  +   +  F  L  V + G + D   +T L+   CA     DAM  
Sbjct: 90  PTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDI 149

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMK 199
            ++        PD   +N L+           A ++L  M +       PD ++   ++ 
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGT-PEVYT----IAINCCSQTGDWEFACSVYDDMTK 254
                G  D+A   Y   H+   +G  P+V T    IA  C +Q  D   A  V + M K
Sbjct: 210 GFFKEGDSDKAYSTY---HEMLDRGILPDVVTYSSIIAALCKAQAMDK--AMEVLNTMVK 264

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG-ACSNAKNWQ 313
            GV+PD +  ++++     +G+ + A   L++ ++ G+   +++YSSLM   C N ++ +
Sbjct: 265 NGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTE 324

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A ++++ M    L+P ++T   L+        L +   +L  M   G+ P+   ++IL+
Sbjct: 325 -ARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILI 383

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            A  +++ V+  +++ S+ ++ G+ PN+V +  +I
Sbjct: 384 CAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVI 418



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 160/386 (41%), Gaps = 48/386 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + GR +E   + + M ++GL + D   +        ++ A+ E      L+     
Sbjct: 314 NYLCKNGRSTEARKIFDSMTKRGL-EPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 372

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-AMF 147
            P    FN+L+   A  +  + A  V   +++ GL  +   Y T+I    KSG VD AM 
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 432

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM------------NAEVHP-- 186
                  E + P+ +V+ +LI         D+A +++ EM            N+ +    
Sbjct: 433 YFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHC 492

Query: 187 -------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                              V PD IT   L+  C  AG++D A ++   +    +K    
Sbjct: 493 KEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIV 552

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y   IN   +    + A +++ +M   GV P+ +  + ++    H  +  AA E+    
Sbjct: 553 TYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSI 612

Query: 288 KNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
              G  + + +Y+ ++ G C N     +AL +++++    L+    T N +I AL    +
Sbjct: 613 TKSGTQLELSTYNIILHGLCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGALLKCGR 671

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSIL 372
           + +  ++ +   + GL P+  TYS++
Sbjct: 672 MDEAKDLFAAHSANGLVPDVRTYSLM 697


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 165/357 (46%), Gaps = 32/357 (8%)

Query: 96  NMLMSVCASSK---DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDAMFEN 149
           ++ +SV  S +    SE A +    +Q+  +K   K+Y  ++       +   ++ ++ N
Sbjct: 112 DLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSN 171

Query: 150 VK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           +K     P+   +N L+ A  ++  VD A  +L EM+++    DPD ++   L+ +    
Sbjct: 172 MKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSK--GCDPDEVSYTTLISSLCKL 229

Query: 205 GQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           G+V  ARE+        +  TP V  Y   IN   +   +E A  + D+M  KG+ P+ +
Sbjct: 230 GKVKEAREL-------AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGIDPNVI 282

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + +I+    AG VE +  +L +   +G S  + +++SL+          +AL+ ++ M
Sbjct: 283 SYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRM 342

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               + P V   NAL+  LC    L   + V + M+  G CPN  TYS L+    +  D+
Sbjct: 343 IREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDL 402

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSGRPQIEN 437
           +    + +     G  PN+V + C++ +  R   + +A  L E++        Q+EN
Sbjct: 403 DGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENM--------QVEN 451



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 154/366 (42%), Gaps = 51/366 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T+N+L+     +   +GA ++L  +   G   D   YTTLI++  K GKV    E 
Sbjct: 179 PNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAREL 238

Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
             +  P   V+NALI    +    + AF +L EM  +   +DP+ I+   ++ A ++AG 
Sbjct: 239 AMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNK--GIDPNVISYTTIINALSDAGN 296

Query: 207 VDR---------AREVYKMIHKYN--IKG----------------------TPEVYTIAI 233
           V+          AR     +H +   IKG                       P V  +A 
Sbjct: 297 VELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNV--VAY 354

Query: 234 NC-----CSQ--TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           N      CS+   GD   A SV++ M   G  P+    SALID    AG ++ A E+   
Sbjct: 355 NALMHGLCSKRSLGD---AVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNW 411

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               G    +++Y+ ++        + +A  L E+M+     P   T N  I  LC   +
Sbjct: 412 MITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGR 471

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +   ++V   M + G  PNT TY+ LL +  +         L+   +  G+  NLV +  
Sbjct: 472 VDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNT 531

Query: 407 II-GMC 411
           II G C
Sbjct: 532 IIYGYC 537



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 101/454 (22%), Positives = 191/454 (42%), Gaps = 55/454 (12%)

Query: 10  QFPYPNGKHANYAHDVSE-QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKV-Y 63
           +F   N  ++N   D  E  + +YN L++      R+     LL +M  KG  D D+V Y
Sbjct: 161 RFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGC-DPDEVSY 219

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
                ++CK  K +KEA R   +   P++  +N L++        E AFQ+L  +   G+
Sbjct: 220 TTLISSLCKLGK-VKEA-RELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGI 277

Query: 124 KADCKLYTTLITTCAKSGKVD-------AMF----------------------------- 147
             +   YTT+I   + +G V+        MF                             
Sbjct: 278 DPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHEALD 337

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                  E V P+ V +NAL+       ++  A  V  +M  E++   P+  T  AL+  
Sbjct: 338 FWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQM--EINGCCPNVRTYSALIDG 395

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A AG +D A EV+  +  +        YT  ++   +   +  A  + ++M  +   P+
Sbjct: 396 YAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPN 455

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  +  I     +G+V+ A ++  +  N G      +Y+ L+ +    + + +A  L +
Sbjct: 456 TVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVK 515

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+   ++  + T N +I   C    L + +E+L  M   G  P+ IT +I++ A  ++ 
Sbjct: 516 DMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQG 575

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
            V + + L+ +       P+++ +  +I G+C+ 
Sbjct: 576 KVNIAIQLMDRLSAGKWHPDIIAYTSLISGICTH 609



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 140/339 (41%), Gaps = 23/339 (6%)

Query: 21  YAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           +A   S  LH++  LI+    +G   E +D  + M R+G++     Y+A    +C S+++
Sbjct: 308 FARGCSPNLHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLC-SKRS 366

Query: 77  IKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           + +A   F  +      P + T++ L+   A + D +GA +V   +   G   +   YT 
Sbjct: 367 LGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTC 426

Query: 133 LITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           ++    ++   +  +        EN  P+ V FN  I     SG VD A  V  +M    
Sbjct: 427 MVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNS- 485

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGDW 242
               P+  T   L+ +     +   A  + K +    I+     Y   I   CC+  G  
Sbjct: 486 -GCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCA--GML 542

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
             A  +   M  +G  PD + ++ +ID     GKV  A +++           II+Y+SL
Sbjct: 543 GEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSL 602

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           +         ++A+     M S  + P V+T N L+  L
Sbjct: 603 ISGICTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/256 (24%), Positives = 114/256 (44%), Gaps = 13/256 (5%)

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +LQ+ K +GIS     + S++G+   A + ++AL+ +  M+  ++KPTV   N ++ AL 
Sbjct: 98  LLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALL 157

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
           D ++      + S+MK  G+ PN  TY+ILL A  + + V+    LL +    G  P+ V
Sbjct: 158 DENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEV 217

Query: 403 MFK------CIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWT-SLALMVYREAIVAGT 455
            +       C +G      E A +    V  +N+    +  ++T   A  +  E +  G 
Sbjct: 218 SYTTLISSLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYTFEEAFQLLDEMMNKGI 277

Query: 456 IPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF----GEYDPRA 511
            P V   + ++  L    N ++   ++  +     +       SLI GF    G ++  A
Sbjct: 278 DPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTSLIKGFFLKGGSHE--A 335

Query: 512 FSLLEEAASFGIVPCV 527
               +     G+VP V
Sbjct: 336 LDFWDRMIREGVVPNV 351



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 81/178 (45%), Gaps = 1/178 (0%)

Query: 197 LMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           ++K   +   +  A E +K I +  + K TP  Y + I   +   + +    +   M  +
Sbjct: 46  VLKRLKHEHDITLALEYFKSIANSKSFKHTPLTYQMMIEKLASEREMDCVQYLLQQMKLE 105

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G+   E    ++I     AG  E A +     ++  +   +  Y+ ++ A  +   +Q  
Sbjct: 106 GISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMI 165

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             +Y +MK   ++P V T N L+ ALC  +++    ++L +M S G  P+ ++Y+ L+
Sbjct: 166 NPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLI 223


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 150/336 (44%), Gaps = 11/336 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
           +P + T ++ M+     +  +  F VL  V + GL+     +TTLI    K G+      
Sbjct: 125 SPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVE 184

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              D + +  +PD   +N +I    + G    A  +L +M  E     P+ +T   L+ +
Sbjct: 185 LFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKM--EEAGCQPNMVTYSTLIDS 242

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                 V+ A +++  +    I      YT  I    +   W+ A ++ ++MT   ++PD
Sbjct: 243 LCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPD 302

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + L+D     GKV  A  +L+     G+   +++YSSLM   S   +  +A +L+ 
Sbjct: 303 IVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFH 362

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M +   KP + + N LI   C   ++ + M++ ++M   GL PN ++Y+ L+    +  
Sbjct: 363 VMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLG 422

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY 415
            +     L      +G +P+L  +  ++ G C + Y
Sbjct: 423 KLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGY 458



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/418 (24%), Positives = 187/418 (44%), Gaps = 35/418 (8%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV--DPDHITIGALMKACANAGQVDR 209
           P  + F  L++A  + G   + +DV+  ++ ++  V   P+  T+   M       +VD 
Sbjct: 90  PCIIQFAKLLSAIVKMG---QYYDVVISLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDL 146

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
              V   + K  ++ T   +T  IN   + G++  A  ++DDM  KG  PD    + +I+
Sbjct: 147 GFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIIN 206

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G+  AA  +L++ +  G    +++YS+L+ +    +   +AL+++ +MK+  + P
Sbjct: 207 GLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISP 266

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            + T  +LI  LC   +  +   +L++M SL + P+ +T+++L+    ++  V   L +L
Sbjct: 267 DIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVL 326

Query: 390 SQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNEHVLSFNSGRPQI-----------E 436
               E GV PN+V +  ++   S   +  +AR L  HV+     +P I           +
Sbjct: 327 KTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKL-FHVMITKGCKPNIFSYNILINGYCK 385

Query: 437 NKWTSLALMVYREAIVAGTIP-TVEVVSKVLGCLQLPYNADIRER--LVENLGVSADALK 493
            K    A+ ++ E I  G  P  V   + + G  QL     +RE   L  N+  + +   
Sbjct: 386 AKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQL---GKLREAQDLFRNMCTNGNLPD 442

Query: 494 RSNLCSLIDGFGE--YDPRAFSLLEEAASFGIVPCVSFKEIPVVV--------DARKL 541
                 L+DGF +  Y  +AF L     S  + P +    I V          DARKL
Sbjct: 443 LFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKL 500



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 167/400 (41%), Gaps = 13/400 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N L + G  ++ ++L +DM  KG       Y+     +CK  +    A    K+      
Sbjct: 171 NGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQ 230

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGK 142
           P + T++ L+      +    A  +   ++  G+  D   YT+LI    K       S  
Sbjct: 231 PNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASAL 290

Query: 143 VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           ++ M   N+ PD V FN L+    + G V  A  VL  M      V+P+ +T  +LM   
Sbjct: 291 LNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTE--MGVEPNVVTYSSLMYGY 348

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           +    V  AR+++ ++     K     Y I IN   +    + A  ++++M  +G+ P+ 
Sbjct: 349 SLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNN 408

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LI      GK+  A ++ +     G    + +YS L+          KA  L+  
Sbjct: 409 VSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRA 468

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+S  LKP +     L+ A+C         ++ S++   GL P+   Y+ ++    ++  
Sbjct: 469 MQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGL 528

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
           ++  L      + DG  P+ + +  II    +  +++R L
Sbjct: 529 LDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRAL 568


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 186/430 (43%), Gaps = 42/430 (9%)

Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y +LI    K+GK+D  +E         + P   V N +I    ++G    A      + 
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVA 92

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQT 239
                  PD IT   L+ A   +G+V+ A ++++ +H  + +  P V  YT  IN   + 
Sbjct: 93  GT--KCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSS-QCLPNVVTYTTVINGLCKD 149

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G  + A  + D M + G  P+ +  S L++    AG+ +  F +LQE   +G    +I Y
Sbjct: 150 GKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMY 209

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           ++L+     ++   +ALEL + M      PTV T N+L+   C   Q+ +   ++  M  
Sbjct: 210 NTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSE 269

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR----- 413
            G  P+ I Y+ ++    R   ++    LL Q      +P+++ +  II G+C       
Sbjct: 270 RGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDA 329

Query: 414 --RYEKARTLNEHVLSF----NSGRPQI------ENKWTSLALMVYREAIVAGTIPTVEV 461
             + E A  + E +       N+G   +        + +  AL + R  I +  +P +  
Sbjct: 330 DWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSS 389

Query: 462 VSKVLGCLQLPYNADIRERLVENLGVSADALKRSN---LCSLIDGF---GEYDP--RAFS 513
            S V+G L   ++ D   ++    G+ ++   + N     +LIDG    GE D   R F 
Sbjct: 390 FSMVIGSLCKSHDLDAAYKI---FGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE 446

Query: 514 LLEEAASFGI 523
           L+ E+   G+
Sbjct: 447 LMVESFRPGV 456



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 170/395 (43%), Gaps = 59/395 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + G++ +  +LL++M  +G+     V++     +CK+ +   +A  +FK V      P
Sbjct: 40  LCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGR-FGDALGYFKTVAGTKCTP 98

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFE- 148
            + TFN+L+     S   E AFQ+   +  +     +   YTT+I    K GK+D   E 
Sbjct: 99  DIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIEL 158

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                     P+ + ++ L+    ++G  D+ F +L EM        PD I    L+   
Sbjct: 159 LDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTR--RGFQPDVIMYNTLLNGL 216

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             + ++D A E+ ++                                   M + G  P  
Sbjct: 217 CKSRRLDEALELVQL-----------------------------------MIRSGCYPTV 241

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
           V  ++L++    + +V+ AF ++Q    +G    +I+Y++++ G C +A+    A  L +
Sbjct: 242 VTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDAR-LDDAQALLK 300

Query: 321 HMKSIKLKPTVSTMNALITALC-----DGD-QLPKTMEVLSDMKSLGLCPNTITYSILLV 374
            M + +  P V T + +I  LC     D D +L    E+L  MK  G  PN  TY++++ 
Sbjct: 301 QMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIE 360

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
              R    +  L LL +  +  V+P+L  F  +IG
Sbjct: 361 GLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIG 395



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 163/360 (45%), Gaps = 28/360 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + GR  +   LL++M R+G      +Y+     +CKS++ + EA    +L+      P
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRR-LDEALELVQLMIRSGCYP 239

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
           T+ T+N LM +   SK  + AF++++++ E G   D   Y T+I    +  ++D     +
Sbjct: 240 TVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALL 299

Query: 151 K--------PDRVVFNALITACGQSGAVDR------AFDVLAEMNAEVHPVDPDHITIGA 196
           K        PD + ++ +I    +   VD       A ++L  M     P  P+  T   
Sbjct: 300 KQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCP--PNAGTYAV 357

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           +++    A +  +A  + + +    +      +++ I    ++ D + A  ++  M+++ 
Sbjct: 358 VIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERE 417

Query: 257 VIPDEVFLSALIDFAGHAGKVEAA---FEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
             P+ V  +ALID     G+V+ A   FE++ E+   G++    +Y+S++         +
Sbjct: 418 CKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVA----TYNSVLDGLCGVGRIE 473

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A+ + E M   +  P  ++  ALI  LC    + +  E+   +++ G       Y++L+
Sbjct: 474 EAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLV 533



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 14/200 (7%)

Query: 46  DLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102
           ++LE M++ G       Y      +C   KSQ+A+    R       P LS+F+M++   
Sbjct: 338 EILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSL 397

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MFENVKPDRV 155
             S D + A+++  ++ E   K +   Y  LI   +K G+VD        M E+ +P   
Sbjct: 398 CKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVA 457

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAREVY 214
            +N+++      G ++ A  ++  M   +H    PD  + GAL++       V+ A E++
Sbjct: 458 TYNSVLDGLCGVGRIEEAVRMVEGM---IHKECFPDGASYGALIRGLCRVSCVEEAYELF 514

Query: 215 KMIHKYNIKGTPEVYTIAIN 234
           + +          VY + +N
Sbjct: 515 QAVEAKGFAMEVGVYNVLVN 534


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 167/382 (43%), Gaps = 40/382 (10%)

Query: 28  QLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +H+Y    +RL R+G+I E   +   M + GL      ++A     CK +  +  AF+ 
Sbjct: 334 NVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK-EGWVVSAFQL 392

Query: 84  FKLVPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             ++      P + T+N LM  +C  SK S  AF +LR V + GL               
Sbjct: 393 LSVMEKGNCKPNIRTYNELMEGLCRVSK-SYKAFLLLRRVVDNGLL-------------- 437

Query: 139 KSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                        PDRV +N L+    + G ++ AF++   MN+    ++PD  T  AL+
Sbjct: 438 -------------PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSA--GLEPDGFTFTALI 482

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                 G++++A  +   + K  I      +T  I+   + G  +  C ++++M +   +
Sbjct: 483 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 542

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
                 +  +D  G   K+  A  +L +    G+   +++++ L+     A     +L++
Sbjct: 543 TTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKM 602

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            E MK     P V T   +I  LC+  ++ +   +L  M S G+ PN  TY++L+ A  +
Sbjct: 603 LERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVK 662

Query: 379 KDDVEVGLMLLSQAKEDGVIPN 400
              ++    ++S   ++G  PN
Sbjct: 663 AGRLDRAFQIVSTMVKNGCQPN 684



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 115/492 (23%), Positives = 201/492 (40%), Gaps = 72/492 (14%)

Query: 77  IKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           + EAFR F+ +       P   T+++L+     +   E AFQ+ + + E G +   + YT
Sbjct: 245 LGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 304

Query: 132 TLITTCAKSGKVD------------AMFENVK---------------------------- 151
            LI      G  D            A   NV                             
Sbjct: 305 VLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKH 364

Query: 152 ---PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
              P  + FNALI    + G V  AF +L+ M  E     P+  T   LM+      +  
Sbjct: 365 GLCPGIITFNALINGYCKEGWVVSAFQLLSVM--EKGNCKPNIRTYNELMEGLCRVSKSY 422

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
           +A  + + +    +      Y I ++   + G    A ++++ M   G+ PD    +ALI
Sbjct: 423 KAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 482

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           D     G++E A  IL     +GIS+  +++++L+         +    L+E+M   +  
Sbjct: 483 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 542

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
            T  T N  + AL    +L +   +L  M   GL P+ +T++IL+    R  +  + L +
Sbjct: 543 TTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKM 602

Query: 389 LSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 446
           L + K+ G  PN+  +  II G+C+  R E+A T+   + SF        N +T   L+ 
Sbjct: 603 LERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVS----PNHFTYAVLV- 657

Query: 447 YREAIVAGTIP-TVEVVSKVL--GCL--QLPYNADIRERLVENLGVSADALKRSNLCSLI 501
            +  + AG +    ++VS ++  GC      Y+A +   ++ N  + A AL  +      
Sbjct: 658 -KAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSST------ 710

Query: 502 DGFGEYDPRAFS 513
              G+ D R+ S
Sbjct: 711 ---GDLDARSLS 719



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 143/320 (44%), Gaps = 15/320 (4%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--MF------ENVKPDRVVFNALIT 162
           AF V R +   G       Y T++    K+G V A  MF           D  V  +L+ 
Sbjct: 178 AFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVL 237

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
           A  +   +  AF V  +M+ E     P+ +T   L+     AG+++ A ++ + + +   
Sbjct: 238 ANCRRDDLGEAFRVFEKMSKE-ENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGC 296

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           + +   YT+ I      G  + A  + D+M  K  +P+    + LID     GK+E A  
Sbjct: 297 QPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANG 356

Query: 283 ILQEAKNQGISVGIISYSSLM-GACSNAKNWQ-KALELYEHMKSIKLKPTVSTMNALITA 340
           + ++    G+  GII++++L+ G C   + W   A +L   M+    KP + T N L+  
Sbjct: 357 VFRKMLKHGLCPGIITFNALINGYCK--EGWVVSAFQLLSVMEKGNCKPNIRTYNELMEG 414

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           LC   +  K   +L  +   GL P+ +TY+IL+    ++  + +   + +     G+ P+
Sbjct: 415 LCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPD 474

Query: 401 LVMFKCII-GMCSR-RYEKA 418
              F  +I G+C   R E+A
Sbjct: 475 GFTFTALIDGLCKLGRLEQA 494



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 92/425 (21%), Positives = 161/425 (37%), Gaps = 72/425 (16%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H +   + ++N LI    ++G +     LL  ME+       + Y+     +C+  K+ K
Sbjct: 364 HGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYK 423

Query: 79  EAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--------- 126
                 ++V N   P   T+N+L+           AF +   +  AGL+ D         
Sbjct: 424 AFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALID 483

Query: 127 --CKL------------------------YTTLITTCAKSGK---VDAMFENVKPDRVV- 156
             CKL                        +T LI    K GK   V  +FEN+  +R + 
Sbjct: 484 GLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLT 543

Query: 157 ----FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
               FN  + A G+   ++ A  +L +M    + + P  +T   L++    AG+   + +
Sbjct: 544 TAHTFNCFLDALGKDYKLNEANAMLGKMMK--YGLVPSVVTHTILIEGHCRAGETALSLK 601

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           + + + +         YTI IN     G  E A ++   M+  GV P+    + L+    
Sbjct: 602 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHV 661

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGA--CSNAKNWQKALELYEHMKSIKLK-- 328
            AG+++ AF+I+      G       YS+L+     SN     +AL     + +  L   
Sbjct: 662 KAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSE 721

Query: 329 ----------------PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
                           PT    N L+  LC   ++ +  ++  DM   GL P+    SI+
Sbjct: 722 ENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAISSII 781

Query: 373 LVACE 377
              C+
Sbjct: 782 EHYCK 786


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 180/436 (41%), Gaps = 54/436 (12%)

Query: 43  ECIDLLEDMERK-GLLDMDKVYHARFFNVCKSQK--AIKEAFRFFKLVPNPTLSTFNMLM 99
           E   ++ +ME   G+    K ++     +CKS K  A  + F   +     + +TF++L+
Sbjct: 172 EAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILI 231

Query: 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENVK----- 151
           +    +     A  + +     G   D   YT ++   AK+ K+    A+ E +      
Sbjct: 232 NGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCT 291

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P    +NAL+    + G ++ A D+L ++    +   PD +T  +L+      G+  R+ 
Sbjct: 292 PTIATYNALLNGLCKMGRLEEAIDLLRKIVD--NGCTPDVVTYTSLIDGL---GKEKRSF 346

Query: 212 EVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
           E YK+  +   +G       YT  I    QTG    A SVY  MT  G +PD V LS +I
Sbjct: 347 EAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMI 406

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           D    AG++ AA  I +  + +G++   + YS+L+     A+    ALE+   MK     
Sbjct: 407 DGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCT 466

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL----------VACER 378
           P   T N LI  LC    +        +M   G  P+  TY+IL+           AC  
Sbjct: 467 PDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGV 526

Query: 379 KDD--------------------VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
            DD                    +E G ML  + +  GV  +    + I  +C     KA
Sbjct: 527 LDDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLC-----KA 581

Query: 419 RTLNEHVLSFNSGRPQ 434
             ++E V  FN+ R +
Sbjct: 582 NRVDEAVSLFNAIRKE 597



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 158/347 (45%), Gaps = 12/347 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T+N+L++    +++ E AF V+R ++E  G+    K +  ++    KSGKV A  +
Sbjct: 152 PDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMD 211

Query: 149 NVKPDR-------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           + +  R         F+ LI    ++G + +A  +  E       +D    T  A++   
Sbjct: 212 HFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIH--TYTAIVNWL 269

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A   ++  A  + + I       T   Y   +N   + G  E A  +   +   G  PD 
Sbjct: 270 AKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDV 329

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  ++LID  G   +   A+++ +E  ++G+++  + Y++L+          +A  +Y+ 
Sbjct: 330 VTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKT 389

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S    P V T++ +I  L    ++   + +   M++ GL PN + YS L+    +   
Sbjct: 390 MTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARK 449

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
           ++  L +L+Q K+    P+ + +  +I G+C S   E AR   + +L
Sbjct: 450 MDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEML 496



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 163/373 (43%), Gaps = 26/373 (6%)

Query: 29  LHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +H+Y    N L +  +I E + L+E +   G       Y+A    +CK  + ++EA    
Sbjct: 259 IHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGR-LEEAIDLL 317

Query: 85  -KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            K+V N   P + T+  L+      K S  A+++ + +   GL  D   YT LI    ++
Sbjct: 318 RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQT 377

Query: 141 GKV---DAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           GK+    ++++ +      PD V  + +I    ++G +  A  +   M  E   + P+ +
Sbjct: 378 GKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSM--EARGLAPNEV 435

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              AL+     A ++D A E+   + K         Y I I+   ++GD E A + +D+M
Sbjct: 436 VYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEM 495

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            + G  PD    + LI     AG  +AA  +L +     +S     YSSL+     +   
Sbjct: 496 LEAGCKPDVYTYNILISGLCKAGNTDAACGVLDD-----MSSSRFVYSSLVDGLCKSGKL 550

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +    L+  M+   +  +  T   LI  LC  +++ + + + + ++  G+ P+   Y+ +
Sbjct: 551 EGGCMLFHEMERSGVANS-QTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSI 608

Query: 373 LVACERKDDVEVG 385
           + A  +   V  G
Sbjct: 609 ISALIKSGKVNEG 621



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 117/263 (44%), Gaps = 11/263 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           L + GRI   + + + ME +GL   + VY A    +CK++K   A++   +  K    P 
Sbjct: 409 LSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 468

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFE 148
             T+N+L+     S D E A      + EAG K D   Y  LI+   K+G  DA   + +
Sbjct: 469 TITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLD 528

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           ++   R V+++L+    +SG ++    +  EM  E   V         +   C  A +VD
Sbjct: 529 DMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEM--ERSGVANSQTRTRLIFHLC-KANRVD 585

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A  ++  I K  +   P  Y   I+   ++G      +VY +MT+    PD V  +AL+
Sbjct: 586 EAVSLFNAIRKEGMP-HPYAYNSIISALIKSGKVNEGQAVYQEMTRWWK-PDRVTYNALL 643

Query: 269 DFAGHAGKVEAAFEILQEAKNQG 291
           +    A +++ A     E   +G
Sbjct: 644 NGMIGANRMDRAHYYYLEMTGRG 666



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 119/299 (39%), Gaps = 36/299 (12%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--------------------- 189
           +PD   +N LIT    +   + AF V+ EM  E   V P                     
Sbjct: 151 RPDVETWNVLITGYCLAREPEEAFAVIREME-EDFGVAPSLKTHNLVLHGLCKSGKVLAA 209

Query: 190 -DHI------------TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
            DH             T   L+     AG + +A  + +             YT  +N  
Sbjct: 210 MDHFEAVRRSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWL 269

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           ++    + A ++ + +T  G  P     +AL++     G++E A ++L++  + G +  +
Sbjct: 270 AKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDV 329

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           ++Y+SL+      K   +A +L++ M S  L        ALI  L    ++P+   V   
Sbjct: 330 VTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKT 389

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
           M S G  P+ +T S ++    +   +   + +    +  G+ PN V++  +I G+C  R
Sbjct: 390 MTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKAR 448


>gi|168052517|ref|XP_001778696.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669911|gb|EDQ56489.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 799

 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 104/421 (24%), Positives = 183/421 (43%), Gaps = 48/421 (11%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLS 93
           QG  +E + ++  +  K   + D V ++   N        ++A   F L+      P L 
Sbjct: 313 QGMYTEALQVV-GLLVKAKFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLV 371

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---GKVDAMFENV 150
           TFN LM   AS+   E A ++L  + EA ++ +     +L   CA++    KV  +F   
Sbjct: 372 TFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFHEA 431

Query: 151 KPDRVV-----FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           K  ++      FNA ITA  ++G  D A  +L  M  E   + P+ +T   L+ A  + G
Sbjct: 432 KVRQIALNVPAFNAAITAYIEAGQFDEAKALLEVM--EEQNLRPNGVTFLLLINAAGSLG 489

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--------- 256
               AR +Y  +    I  T E  +  IN  ++ G +  A +++DDM K G         
Sbjct: 490 DYREARTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEARTIFDDMRKAGCKANVVTYT 549

Query: 257 -----------------------VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
                                  + PD +    L      A + E   +I + ++ +GI 
Sbjct: 550 SLMIAYRMYDDAQLACEEMVAAGITPDSIAFGTLFVALNKANRSEKVLQIEKSSRARGIL 609

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
              ++Y+  + ACS  K+W+ AL LYE MK  +L+ T + +  L++A+    +L +  +V
Sbjct: 610 FDDVAYTETLLACSRLKDWETALFLYEGMKKRRLRLTNTMVINLLSAVGRSGKLDRLHKV 669

Query: 354 LSDM-KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
             ++ + +G  P    Y+IL+ +  R       L +L   K+D + PN   ++ I+   S
Sbjct: 670 FLELQQQIGFVPTLQMYNILIDSYSRGLKWRKCLEVLGCIKKDILEPNWKTYEPILSCLS 729

Query: 413 R 413
           +
Sbjct: 730 Q 730



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 160/377 (42%), Gaps = 46/377 (12%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------- 142
           P+ S++N L++ C SS     A ++ + + + G+  D   Y  +++     G+       
Sbjct: 157 PSRSSYNNLINACGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAY 216

Query: 143 VDAMFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D +     P DR   N ++    + G  + A ++  EM  +++  +PD +T  AL+   
Sbjct: 217 YDHLISKKVPLDRYSHNIILNCLTKLGRFEDAINLFKEMR-KMNGCEPDVVTFNALLHVY 275

Query: 202 ANAGQVDRAREVYKM---------IHKYNI------------------------KGTPEV 228
           A  GQ+ +A+E + M         I  +N                         K  P+V
Sbjct: 276 ALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDV 335

Query: 229 --YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             Y+  +N   + G  E A  V+D M ++   P+ V  + L+D    AGK E A E+L +
Sbjct: 336 VSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHD 395

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
                I   +++  SL  AC+ A+  +K  +++   K  ++   V   NA ITA  +  Q
Sbjct: 396 MAEARIEPNVVTICSLFAACARARCPEKVRDVFHEAKVRQIALNVPAFNAAITAYIEAGQ 455

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
             +   +L  M+   L PN +T+ +L+ A     D      L  +  + G+   +     
Sbjct: 456 FDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLGDYREARTLYDKMVDLGIPLTVEPCSA 515

Query: 407 IIGMCSRR--YEKARTL 421
           +I   ++   Y +ART+
Sbjct: 516 LINAFAKHGMYNEARTI 532



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 154/364 (42%), Gaps = 45/364 (12%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQ-EAGLKADCKLYTTLITTCAKSGKVD---AMFENV 150
           F  L+S    +   E + +V   ++ +   +A   +Y  +I   A+  + D    +F  +
Sbjct: 54  FPALISEITRTGALEHSLRVFNWMKNQKCYRARTDIYNCMIWLHARHQRADQARGLFYEM 113

Query: 151 K-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           K     PD   +NAL+   G++G    A  +  +M     P+ P   +   L+ AC ++G
Sbjct: 114 KVWRCKPDVETYNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNLINACGSSG 173

Query: 206 QVDRAREVYKM---------IHKYNI-------KGTPE-------------------VYT 230
           Q  +A E+ K          +  YNI        G P                     + 
Sbjct: 174 QWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYSHN 233

Query: 231 IAINCCSQTGDWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           I +NC ++ G +E A +++ +M K  G  PD V  +AL+      G++  A E       
Sbjct: 234 IILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIG 293

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           +G++  I+++++L+GA ++   + +AL++   +   K +P V + ++L+ A        K
Sbjct: 294 EGMAPTIVTFNTLLGAYASQGMYTEALQVVGLLVKAKFEPDVVSYSSLLNAFGKAGYPEK 353

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
             EV   MK     PN +T++ L+ A       E    LL    E  + PN+V    +  
Sbjct: 354 AQEVFDLMKQRSRKPNLVTFNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICSLFA 413

Query: 410 MCSR 413
            C+R
Sbjct: 414 ACAR 417



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/261 (21%), Positives = 117/261 (44%), Gaps = 6/261 (2%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           +R  F ALI+   ++GA++ +  V   M N + +    D      ++   A   + D+AR
Sbjct: 50  NRKNFPALISEITRTGALEHSLRVFNWMKNQKCYRARTD--IYNCMIWLHARHQRADQAR 107

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK--KGVIPDEVFLSALID 269
            ++  +  +  K   E Y   +N   + G W +A  ++DDM +  K + P     + LI+
Sbjct: 108 GLFYEMKVWRCKPDVETYNALMNVHGRAGQWRWALQIFDDMLQAPKPIAPSRSSYNNLIN 167

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
             G +G+   A EI +   + G+   +++Y+ ++ A  +    + A+  Y+H+ S K+  
Sbjct: 168 ACGSSGQWFKALEICKRMTDNGVGPDLMTYNIILSAFKSGGQPRHAVAYYDHLISKKVPL 227

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLML 388
              + N ++  L    +    + +  +M+ +  C P+ +T++ LL        +      
Sbjct: 228 DRYSHNIILNCLTKLGRFEDAINLFKEMRKMNGCEPDVVTFNALLHVYALCGQITKAQET 287

Query: 389 LSQAKEDGVIPNLVMFKCIIG 409
                 +G+ P +V F  ++G
Sbjct: 288 FDMMIGEGMAPTIVTFNTLLG 308



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 91/451 (20%), Positives = 182/451 (40%), Gaps = 70/451 (15%)

Query: 7   NMLQFPYPNGKHANYAHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKV 62
           +MLQ P P          ++    SYN LI      G+  + +++ + M   G+   D +
Sbjct: 147 DMLQAPKP----------IAPSRSSYNNLINACGSSGQWFKALEICKRMTDNGV-GPDLM 195

Query: 63  YHARFFNVCKSQKAIKEAFRFF-----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
            +    +  KS    + A  ++     K VP    S  N++++        E A  + + 
Sbjct: 196 TYNIILSAFKSGGQPRHAVAYYDHLISKKVPLDRYS-HNIILNCLTKLGRFEDAINLFKE 254

Query: 118 VQEA-GLKADCKLYTTLITTCAKSGKV-------DAMF-ENVKPDRVVFNALITACGQSG 168
           +++  G + D   +  L+   A  G++       D M  E + P  V FN L+ A    G
Sbjct: 255 MRKMNGCEPDVVTFNALLHVYALCGQITKAQETFDMMIGEGMAPTIVTFNTLLGAYASQG 314

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
               A  V+  +       +PD ++  +L+ A   AG  ++A+EV+ ++ + + K     
Sbjct: 315 MYTEALQVVGLLVKA--KFEPDVVSYSSLLNAFGKAGYPEKAQEVFDLMKQRSRKPNLVT 372

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           +   ++  +  G +E A  +  DM +  + P+ V + +L      A   E   ++  EAK
Sbjct: 373 FNGLMDAYASAGKYERARELLHDMAEARIEPNVVTICSLFAACARARCPEKVRDVFHEAK 432

Query: 289 NQGISVGIISYSS-----------------------------------LMGACSNAKNWQ 313
            + I++ + ++++                                   L+ A  +  +++
Sbjct: 433 VRQIALNVPAFNAAITAYIEAGQFDEAKALLEVMEEQNLRPNGVTFLLLINAAGSLGDYR 492

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A  LY+ M  + +  TV   +ALI A        +   +  DM+  G   N +TY+ L+
Sbjct: 493 EARTLYDKMVDLGIPLTVEPCSALINAFAKHGMYNEARTIFDDMRKAGCKANVVTYTSLM 552

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           +A    DD ++    +  A   G+ P+ + F
Sbjct: 553 IAYRMYDDAQLACEEMVAA---GITPDSIAF 580



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 134/310 (43%), Gaps = 19/310 (6%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           KA+ E      L PN    TF +L++   S  D   A  +   + + G+    +  + LI
Sbjct: 460 KALLEVMEEQNLRPNGV--TFLLLINAAGSLGDYREARTLYDKMVDLGIPLTVEPCSALI 517

Query: 135 TTCAKSGKVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
              AK G  +    +F+++     K + V + +L+ A       D A     EM A    
Sbjct: 518 NAFAKHGMYNEARTIFDDMRKAGCKANVVTYTSLMIA---YRMYDDAQLACEEMVAA--G 572

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + PD I  G L  A   A + ++  ++ K      I      YT  +  CS+  DWE A 
Sbjct: 573 ITPDSIAFGTLFVALNKANRSEKVLQIEKSSRARGILFDDVAYTETLLACSRLKDWETAL 632

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGA 305
            +Y+ M K+ +      +  L+   G +GK++   ++  E + Q G    +  Y+ L+ +
Sbjct: 633 FLYEGMKKRRLRLTNTMVINLLSAVGRSGKLDRLHKVFLELQQQIGFVPTLQMYNILIDS 692

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
            S    W+K LE+   +K   L+P   T   +++ L   +     +E+  ++ + G+ P+
Sbjct: 693 YSRGLKWRKCLEVLGCIKKDILEPNWKTYEPILSCLSQLELWETYLEIYGEVLAQGMEPD 752

Query: 366 TITYSILLVA 375
              Y+IL ++
Sbjct: 753 ---YNILKIS 759



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 13/212 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P    F  L      +  SE   Q+ +  +  G+  D   YT  +  C++    +    +
Sbjct: 575 PDSIAFGTLFVALNKANRSEKVLQIEKSSRARGILFDDVAYTETLLACSRLKDWETALFL 634

Query: 147 FENVKPDRV------VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +E +K  R+      V N L++A G+SG +DR   V  E+  ++  V P       L+ +
Sbjct: 635 YEGMKKRRLRLTNTMVIN-LLSAVGRSGKLDRLHKVFLELQQQIGFV-PTLQMYNILIDS 692

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            +   +  +  EV   I K  ++   + Y   ++C SQ   WE    +Y ++  +G+ PD
Sbjct: 693 YSRGLKWRKCLEVLGCIKKDILEPNWKTYEPILSCLSQLELWETYLEIYGEVLAQGMEPD 752

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
              L   +      G  E A   L EA+ QG+
Sbjct: 753 YNILKISVTAYTSLGMEEEA--SLTEARLQGL 782


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 179/415 (43%), Gaps = 47/415 (11%)

Query: 132 TLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           +L+T  A+ G  + M E        +++P+ V F  LI    +   VD A +VL +M+  
Sbjct: 310 SLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGG 369

Query: 184 VHP------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC- 236
                    V+PD +    L+      G   R +E   ++ +   +      TI  NC  
Sbjct: 370 KESGGISVSVEPDVVIYNTLIDGLCKVG---RQQEGLGLMERMRSQKGCAPDTITYNCLI 426

Query: 237 ---SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
               + G+ E    ++D+M K+GV P+ V ++ L+      G+V +A     EA+ +G+ 
Sbjct: 427 DGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMK 486

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
              ++Y++L+ A  N  N++KA+EL+  M      P       LI+      ++     V
Sbjct: 487 GDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFV 546

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           L+++K LG+ P+T+ Y+ L+    R +       +L + +E G+ P+ + +  +I   S+
Sbjct: 547 LAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASK 606

Query: 414 RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPY 473
                                  N     A  V R+ I AG +PTV     V+    L  
Sbjct: 607 -----------------------NGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNG 643

Query: 474 NADIRERLVENLGVSADALKRSNLCS-LIDGFGEYD--PRAFSLLEEAASFGIVP 525
           N +    + +++  ++     + + + LI+   + +    A SL+E+   +G+ P
Sbjct: 644 NGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTP 698



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 153/363 (42%), Gaps = 47/363 (12%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
           P +  +N L+  +C   +  EG   + R+  + G   D   Y  LI    K+G+++    
Sbjct: 381 PDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKE 440

Query: 146 MF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +F     E V P+ V  N L+    ++G V  A +   E  A+   +  D +T  AL+ A
Sbjct: 441 LFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVE--AQRRGMKGDAVTYTALINA 498

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             N    ++A E++  + K        VY   I+  SQ G    A  V  ++ K G+ PD
Sbjct: 499 FCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPD 558

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM----------------- 303
            V  + LI       K    FE+L+E +  G+    I+Y++L+                 
Sbjct: 559 TVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMR 618

Query: 304 --------------GACSNA----KNWQKALELYEHMKSI-KLKPTVSTMNALITALCDG 344
                         GA  NA     N  +A+E+++ MK+  K+ P     N LI +LC  
Sbjct: 619 KMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKN 678

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           +++   + ++ DMK  G+ PNT TY+ +      + D+E     + +  E    P+ +  
Sbjct: 679 NKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITM 738

Query: 405 KCI 407
           + +
Sbjct: 739 EIL 741



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 124/331 (37%), Gaps = 64/331 (19%)

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           GV+    ++  LI       K    +++  E    G  +   + +SL+   +   N+ + 
Sbjct: 265 GVLISSFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRM 324

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS---------------- 359
            EL E M  + ++P V T   LI  +C   ++   +EVL  M                  
Sbjct: 325 NELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVV 384

Query: 360 ------LGLC----------------------PNTITYSILLVACERKDDVEVGLMLLSQ 391
                  GLC                      P+TITY+ L+    +  ++E G  L  +
Sbjct: 385 IYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDE 444

Query: 392 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL--------- 442
             ++GV PN+V    ++G   R    +  +N  V +   G       +T+L         
Sbjct: 445 MNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNN 504

Query: 443 ---ALMVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADIRERLVE--NLGVSADALKRSN 496
              A+ ++ E + +G  P   V   ++ G  Q    AD    L E   LG+  D +  + 
Sbjct: 505 FEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYN- 563

Query: 497 LCSLIDGFGEYDP--RAFSLLEEAASFGIVP 525
             +LI GF   +   R F +L+E    G+ P
Sbjct: 564 --TLIGGFCRTNKFHRVFEMLKEMEEAGLKP 592



 Score = 45.8 bits (107), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 86/197 (43%), Gaps = 18/197 (9%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFF 84
           YN LI    R  +     ++L++ME  GL      Y+       K+   + A K   +  
Sbjct: 562 YNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMI 621

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKV 143
           K    PT++T+  +++    + +   A ++ + ++ A  +  +  +Y  LI +  K+ KV
Sbjct: 622 KAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKV 681

Query: 144 --------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                   D     V P+   +NA+         +++ F+ +  M    H  +PD+IT+ 
Sbjct: 682 KSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIE--HACNPDYITME 739

Query: 196 ALMKACANAGQVDRARE 212
            L +  +  G+++R ++
Sbjct: 740 ILTEWLSAVGEIERLKK 756


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 153/326 (46%), Gaps = 13/326 (3%)

Query: 63  YHARFFNVCK---SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           Y+      CK   ++KA+++     K    P   T+  L+  C S  + +    + + ++
Sbjct: 263 YNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEME 322

Query: 120 EAGLKADCKLYTTLITTCAKSGKV---DAMFENV-----KPDRVVFNALITACGQSGAVD 171
           E GL+     Y+ +I    K G+     ++FEN+     K +  ++ ALI A G++G V+
Sbjct: 323 ERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVN 382

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
            A ++   M  E    +PD +T G ++     +G++D A E ++      +      Y+ 
Sbjct: 383 EAINLFERMKGE--GFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSS 440

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            I+   + G  + A   +++M ++G   D    +ALID    +GK+E A  + +  + +G
Sbjct: 441 LIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEG 500

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
               + +Y+ L+         ++AL+L++ M    + PT ++  AL   LC   ++ +  
Sbjct: 501 CDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPTTASFRALSVGLCLSGKVARAC 560

Query: 352 EVLSDMKSLGLCPNTITYSILLVACE 377
           ++L ++  +G+ P T    ++ V C+
Sbjct: 561 KILDELAPMGVIPETAFEDMINVLCK 586



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/432 (21%), Positives = 176/432 (40%), Gaps = 44/432 (10%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECID----LLEDMERKGLLDMDKVYH 64
            +F +  GK  NY H    ++  Y  LI    +S   D    +  + + KG L    V+ 
Sbjct: 139 FRFFWWAGKQKNYIH----KIECYVSLIDVLSLSSDFDRVRCIFGEFKEKGFLMT--VFA 192

Query: 65  A----RFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           A    R F      + +   +R  K     P+L TFN L++   +S   E A +V  +++
Sbjct: 193 ANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVME 252

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
                            C K G          PD V +N +I    ++G   +A +   +
Sbjct: 253 -----------------CGKIG----------PDVVSYNTMIKGYCKAGNTKKAMEKFTD 285

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
           M  E   ++PD IT   L++AC + G  D    +Y+ + +  ++  P  Y++ I    + 
Sbjct: 286 M--EKRNLEPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKD 343

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G      SV+++M KKG   +    +ALID  G  G V  A  + +  K +G     ++Y
Sbjct: 344 GRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTY 403

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
             ++     +    +A+E +E  K  ++       ++LI  L    ++ +  +   +M  
Sbjct: 404 GVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVE 463

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
            G   ++  Y+ L+ A  +   +E  L+L  + +++G    +  +  +I    + +    
Sbjct: 464 RGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEE 523

Query: 420 TLNEHVLSFNSG 431
            L    L  + G
Sbjct: 524 ALKLWDLMIDKG 535


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 186/430 (43%), Gaps = 42/430 (9%)

Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y +LI    K+GK+D  +E         + P   V N +I    ++G    A      + 
Sbjct: 33  YGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVA 92

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQT 239
                  PD IT   L+ A   +G+V+ A ++++ +H  + +  P V  YT  IN   + 
Sbjct: 93  GT--KCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSS-QCLPNVVTYTTVINGLCKD 149

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           G  + A  + D M + G  P+ +  S L++    AG+ +  F +LQE   +G    +I Y
Sbjct: 150 GKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMY 209

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           ++L+     ++   +ALEL + M      PTV T N+L+   C   Q+ +   ++  M  
Sbjct: 210 NTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSE 269

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR----- 413
            G  P+ I Y+ ++    R   ++    LL Q      +P+++ +  II G+C       
Sbjct: 270 RGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDA 329

Query: 414 --RYEKARTLNEHVLSF----NSGRPQI------ENKWTSLALMVYREAIVAGTIPTVEV 461
             + E A  + E +       N+G   +        + +  AL + R  I +  +P +  
Sbjct: 330 DWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSS 389

Query: 462 VSKVLGCLQLPYNADIRERLVENLGVSADALKRSN---LCSLIDGF---GEYDP--RAFS 513
            S V+G L   ++ D   ++    G+ ++   + N     +LIDG    GE D   R F 
Sbjct: 390 FSMVIGSLCKSHDLDAAYKI---FGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFE 446

Query: 514 LLEEAASFGI 523
           L+ E+   G+
Sbjct: 447 LMVESFRPGV 456



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 170/395 (43%), Gaps = 59/395 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + G++ +  +LL++M  +G+     V++     +CK+ +   +A  +FK V      P
Sbjct: 40  LCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGR-FGDALGYFKTVAGTKCTP 98

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFE- 148
            + TFN+L+     S   E AFQ+   +  +     +   YTT+I    K GK+D   E 
Sbjct: 99  DIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIEL 158

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                     P+ + ++ L+    ++G  D+ F +L EM        PD I    L+   
Sbjct: 159 LDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTR--RGFQPDVIMYNTLLNGL 216

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             + ++D A E+ ++                                   M + G  P  
Sbjct: 217 CKSRRLDEALELVQL-----------------------------------MIRSGCYPTV 241

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
           V  ++L++    + +V+ AF ++Q    +G    +I+Y++++ G C +A+    A  L +
Sbjct: 242 VTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDAR-LDDAQALLK 300

Query: 321 HMKSIKLKPTVSTMNALITALC-----DGD-QLPKTMEVLSDMKSLGLCPNTITYSILLV 374
            M + +  P V T + +I  LC     D D +L    E+L  MK  G  PN  TY++++ 
Sbjct: 301 QMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIE 360

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
              R    +  L LL +  +  V+P+L  F  +IG
Sbjct: 361 GLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIG 395



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/360 (21%), Positives = 165/360 (45%), Gaps = 28/360 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + GR  +   LL++M R+G      +Y+     +CKS++ + EA    +L+      P
Sbjct: 181 LCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRR-LDEALELVQLMIRSGCYP 239

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMF 147
           T+ T+N LM +   SK  + AF++++++ E G   D   Y T+I    +  ++D   A+ 
Sbjct: 240 TVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALL 299

Query: 148 ENVK-----PDRVVFNALITACGQSGAVDR------AFDVLAEMNAEVHPVDPDHITIGA 196
           + +      PD + ++ +I    +   VD       A ++L  M     P  P+  T   
Sbjct: 300 KQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCP--PNAGTYAV 357

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           +++    A +  +A  + + +    +      +++ I    ++ D + A  ++  M+++ 
Sbjct: 358 VIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERE 417

Query: 257 VIPDEVFLSALIDFAGHAGKVEAA---FEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
             P+ V  +ALID     G+V+ A   FE++ E+   G++    +Y+S++         +
Sbjct: 418 CKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVA----TYNSVLDGLCGVGRIE 473

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A+ + E M   +  P  ++  ALI  LC    + +  E+   +++ G       Y++L+
Sbjct: 474 EAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLV 533



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 88/200 (44%), Gaps = 14/200 (7%)

Query: 46  DLLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102
           ++LE M++ G       Y      +C   KSQ+A+    R       P LS+F+M++   
Sbjct: 338 EILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSL 397

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MFENVKPDRV 155
             S D + A+++  ++ E   K +   Y  LI   +K G+VD        M E+ +P   
Sbjct: 398 CKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRPGVA 457

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAREVY 214
            +N+++      G ++ A  ++  M   +H    PD  + GAL++       V+ A E++
Sbjct: 458 TYNSVLDGLCGVGRIEEAVRMVEGM---IHKECFPDGASYGALIRGLCRVSCVEEAYELF 514

Query: 215 KMIHKYNIKGTPEVYTIAIN 234
           + +          VY + +N
Sbjct: 515 QAVEAKGFAMEVGVYNVLVN 534


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 163/344 (47%), Gaps = 16/344 (4%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFENV 150
           T++ L+ +C   K+     ++   ++++G++ D  ++ TLI   AK G       +F+++
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM 171

Query: 151 K-PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           +  D   +N L+    Q G  + AF +  +M  +   V PD  T  +++ ACA+A  VD+
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQD--SVKPDKRTFVSMLNACADARNVDK 229

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
            RE+Y +I K        V T  IN   + GD   A  V+D++  +    D V  +++I 
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTR----DLVTWTSMIT 285

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G+ + A  + Q  + +G+    +++ SL+ AC++ +  ++  +++  MK +    
Sbjct: 286 GLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDT 345

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            +    A+++       +   +EV   +K      N ++++ ++    +   ++   +  
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKG----RNVVSWTAMIAGFAQHGRIDEAFLFF 401

Query: 390 SQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFNSG 431
           ++  E G+ PN V F  I+G CS     ++ + + +H++    G
Sbjct: 402 NKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 167/388 (43%), Gaps = 49/388 (12%)

Query: 77  IKEAFRFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           I EAF FF K++ +   P   TF  ++  C+S    +   Q+   + EAG  +D ++ T 
Sbjct: 394 IDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTA 453

Query: 133 LITTCAKSGKV-DA--MFENVKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
           L++  AK G + DA  +FE +    VV +NA+ITA  Q    D A      +  E   + 
Sbjct: 454 LLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKE--GIK 511

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+  T  +++  C ++  ++  + V+ +I K  ++    V    ++     GD   A ++
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNL 571

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           ++DM K+ ++     ++  +      GK + AF+  +  +  GI    I+++ L+ AC++
Sbjct: 572 FNDMPKRDLVSWNTIIAGFV----QHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACAS 627

Query: 309 AKNWQKALELYE------------------------------HMKSIKL-KPTVSTMNAL 337
            +   +   L+                               H    KL K  V +  ++
Sbjct: 628 PEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSM 687

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           IT      +  + +E+   M+  G+ P+ IT+   L AC     +E GL      KE  +
Sbjct: 688 ITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNI 747

Query: 398 IPNLVMFKCIIGMCSRRYEKARTLNEHV 425
            P +  + C++ +  R    A  LNE V
Sbjct: 748 EPRMEHYGCMVDLFGR----AGLLNEAV 771



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 148/329 (44%), Gaps = 21/329 (6%)

Query: 62  VYHARFFNVCKS-QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           V H ++ N   + Q  +KE  +       P  STF  +++VC SS   E    V  L+ +
Sbjct: 490 VQHEQYDNALATFQALLKEGIK-------PNSSTFTSILNVCKSSDSLELGKWVHFLIMK 542

Query: 121 AGLKADCKLYTTLIT---TCAKSGKVDAMFENV-KPDRVVFNALITACGQSGAVDRAFDV 176
           AGL++D  +   L++    C        +F ++ K D V +N +I    Q G    AFD 
Sbjct: 543 AGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDY 602

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
              M      + PD IT   L+ ACA+   +   R ++ +I +        V T  I+  
Sbjct: 603 FKMMQES--GIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMY 660

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           ++ G  E A  V+  + KK V     + S +  +A H G+ + A E+  + + +G+    
Sbjct: 661 TKCGSIEDAHQVFHKLPKKNVYS---WTSMITGYAQH-GRGKEALELFYQMQQEGVKPDW 716

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           I++   + AC++A   ++ L  ++ MK   ++P +     ++        L + +E +  
Sbjct: 717 ITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIK 776

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVG 385
           M+   + P++  +  LL AC+   +VE+ 
Sbjct: 777 MQ---VEPDSRVWGALLGACQVHLNVELA 802



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 154/347 (44%), Gaps = 45/347 (12%)

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +EAF+  + +      P   TF  +++ CA +++ +   ++  L+ +AG   D  + T L
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 134 ITT---CAKSGKVDAMFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
           I     C   G    +F+N+   D V + ++IT   + G   +A ++   M  E   V P
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEE--GVQP 310

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D +   +L++AC +   +++ ++V+  + +        V T  ++  ++ G  E A  V+
Sbjct: 311 DKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVF 370

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           D +  + V+    + + +  FA H G+++ AF    +    GI    +++ S++GACS+ 
Sbjct: 371 DLVKGRNVVS---WTAMIAGFAQH-GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSP 426

Query: 310 KNWQKALELYEHM----------------------KSIK---------LKPTVSTMNALI 338
              ++  ++ +H+                       S+K          K  V   NA+I
Sbjct: 427 SALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMI 486

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           TA    +Q    +     +   G+ PN+ T++ +L  C+  D +E+G
Sbjct: 487 TAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG 533



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 12/183 (6%)

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
           C V+ D      I D    +A+++    AG+   A ++L+   +  I +   +YS+L+  
Sbjct: 66  CVVFAD------IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQL 119

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           C   KN      +Y H+K   ++P +   N LI             ++  DM+      +
Sbjct: 120 CIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMRE----KD 175

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNE 423
             ++++LL    +    E    L  Q  +D V P+   F  ++  C  +R  +K R L  
Sbjct: 176 VYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYN 235

Query: 424 HVL 426
            +L
Sbjct: 236 LIL 238


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 157/396 (39%), Gaps = 53/396 (13%)

Query: 72  KSQKAIKEAFRFFK-----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           +S  +  +A RF +       P P  S FN L+   A + D  G  Q+   +++A ++ +
Sbjct: 112 RSPSSSADAARFLRDSLAAGAPPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPN 171

Query: 127 CKLYTTLITTCAKSGKV-DAMF---------ENVKPDRVVFNALITACGQSGAVDRAFDV 176
              Y  L+    K+G+V DA+           +V PD V+ N ++    ++G + +A   
Sbjct: 172 VVTYGILVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKF 231

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-------------- 222
           + E    VH   P+ +T   L  A   AG V  A E+   + K  +              
Sbjct: 232 VEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGL 291

Query: 223 -----------------------KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                                  +G    Y+  +     T +   A  ++ +M  +G  P
Sbjct: 292 CWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSP 351

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D +    +I     AG+++ A+ +    K  G  +   +Y+ L+G     K   +A EL 
Sbjct: 352 DAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELL 411

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             MK   L+P V T N L++ LC         E+L  M   G  P+ +T+  L+    + 
Sbjct: 412 GEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKV 471

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSRR 414
             ++  L +     E G+ PN V++  +I  +C  R
Sbjct: 472 GQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSR 507



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 101/231 (43%), Gaps = 12/231 (5%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAG 205
           E   PD +++  +I+   Q+G +D A+ +   M      +D    +I IG   +      
Sbjct: 347 EGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRR----- 401

Query: 206 QVDRAREVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              R  E Y+++ +    G  P+VYT    ++   + GD+     +   M   G  P  V
Sbjct: 402 --KRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVV 459

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
               LI      G+++ A  I +     GI    + Y++L+     +++   A+EL++ M
Sbjct: 460 TFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEM 519

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +   +   V+T NAL+  L D +   K  E++  M+     P+ +T  IL+
Sbjct: 520 REKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPDYVTIDILM 570



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 77/394 (19%), Positives = 153/394 (38%), Gaps = 25/394 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-----VCKS---QKAIKEAFRFFKL 86
           L + GR+ + + +L+ M      + D        N     +CK+   Q+A+K      + 
Sbjct: 182 LCKAGRVGDALSVLDGMSGP---ESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRS 238

Query: 87  VPN--PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           V    P   T+N L      + +   A +++  +++  +  +     T++      G+V 
Sbjct: 239 VHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNTIVGGLCWVGRVG 298

Query: 145 AMFENVKPDRVV----------FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           A  E  +  R V          ++ L+ A   +  V  A ++  EM  E +   PD I  
Sbjct: 299 AALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGN--SPDAIMY 356

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             ++     AG++D A  +   + K   +   + Y I I    +      A  +  +M +
Sbjct: 357 FTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKE 416

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G+ PD    + L+     AG   A  E+L +  + G    ++++ +L+          +
Sbjct: 417 AGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDE 476

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           AL ++  M    ++P     N LI  LC        +E+  +M+   +  N  T++ LL 
Sbjct: 477 ALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALLK 536

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
               K+  E    L+   +E    P+ V    ++
Sbjct: 537 GLRDKNMPEKAFELMDLMREGRCTPDYVTIDILM 570



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 17/200 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+ R++E  +LL +M+  GL      Y+     +CK+   +       K+
Sbjct: 390 AYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKM 449

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +     P++ TF  L+         + A ++ R + E+G++ +  +Y TLI    KS   
Sbjct: 450 IDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDT 509

Query: 144 -------DAMFENVKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                  D M E   P  V  FNAL+         ++AF+++  M        PD++TI 
Sbjct: 510 SLAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGR--CTPDYVTID 567

Query: 196 ALMKACANAGQVDRAREVYK 215
            LM+     G+ DR +   +
Sbjct: 568 ILMEWLPVIGETDRLKHFMQ 587



 Score = 42.7 bits (99), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 5/111 (4%)

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P  S  N L+ AL     LP   ++ + M+   + PN +TY IL+    +   V   L +
Sbjct: 135 PDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDALSV 194

Query: 389 LS--QAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNEHVLSFNSGRPQ 434
           L      E  V P++VM   I+ G+C   R  +  + + E + S +   P 
Sbjct: 195 LDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPN 245


>gi|9755842|emb|CAC01928.1| 67kD chloroplastic RNA-binding protein, P67 [Arabidopsis thaliana]
          Length = 702

 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 177/388 (45%), Gaps = 34/388 (8%)

Query: 139 KSGKV-DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           KS K+ D M E  +KPD   F  +I+   Q+G   RA +   +M++     +PD++T+ A
Sbjct: 193 KSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSS--FGCEPDNVTMAA 250

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ A   AG VD A  +Y        +     ++  I     +G+++   ++Y++M   G
Sbjct: 251 MIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALG 310

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V P+ V  + LID  G A +   A  I ++    G +    +Y++L+ A   A+    AL
Sbjct: 311 VKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDAL 370

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLV- 374
            +Y  MK   L  TV   N L++   D   + +  E+  DMK+   C P++ T+S L+  
Sbjct: 371 AIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITV 430

Query: 375 -ACE-RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
            AC  R  + E  L+   Q +E G  P L +   +I  C   Y KA+ +++ V +F+   
Sbjct: 431 YACSGRVSEAEAALL---QMREAGFEPTLFVLTSVI-QC---YGKAKQVDDVVRTFD--- 480

Query: 433 PQIENKWTSLALMVYREAIVAGTIPTV------EVVSKVLGCLQ--LPYNADIRERLVEN 484
            Q+      L L +  +    G +  V      E + K++GC++   P    + + LVE 
Sbjct: 481 -QV------LELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEE 533

Query: 485 LGVSADALKRSNLCSLIDGFGEYDPRAF 512
                   K+     LID  G    +A+
Sbjct: 534 QNCEEGVFKK-EASELIDSIGSDVKKAY 560



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 151/335 (45%), Gaps = 11/335 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVD 144
           P+  +  +N+ M V   SKD E + ++   + E G+K D   +TT+I+   ++G   +  
Sbjct: 171 PSREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAV 230

Query: 145 AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             FE +     +PD V   A+I A G++G VD A  +      E   +D   +T   L++
Sbjct: 231 EWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDA--VTFSTLIR 288

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               +G  D    +Y+ +    +K    +Y   I+   +      A  +Y D+   G  P
Sbjct: 289 IYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTP 348

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    +AL+   G A   + A  I +E K +G+S+ +I Y++L+  C++     +A E++
Sbjct: 349 NWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIF 408

Query: 320 EHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           + MK+ +   P   T ++LIT      ++ +    L  M+  G  P     + ++    +
Sbjct: 409 QDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGK 468

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
              V+  +    Q  E G+ P+     C++ + ++
Sbjct: 469 AKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQ 503



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 144/371 (38%), Gaps = 69/371 (18%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +++ LIR     G    C+++ E+M+  G+     +Y+    ++ ++++  +    +  L
Sbjct: 282 TFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDL 341

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + N   P  ST+  L+     ++  + A  + R ++E GL     LY TL++ CA  G V
Sbjct: 342 ITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYV 401

Query: 144 DAMF---------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           D  F         E   PD   F++LIT    SG V  A   L +M       +P    +
Sbjct: 402 DEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREA--GFEPTLFVL 459

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE----FACS--- 247
            ++++    A QVD     +  + +  I          +N  +QT   E      C    
Sbjct: 460 TSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKA 519

Query: 248 -----------VYDDMTKKGVIPDE--------------VFLSALIDFAGHAGKVEAAFE 282
                      V +   ++GV   E               +L+ LID   +  K+E A E
Sbjct: 520 KPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLIDLCVNLNKLERACE 579

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT--- 339
           ILQ      I  G+ S S        A  W        H+KS+ L   ++ ++  +    
Sbjct: 580 ILQLGLEYDIYTGLQSKS--------ATQWSL------HLKSLSLGAALTALHVWMNDLS 625

Query: 340 --ALCDGDQLP 348
             AL  G++ P
Sbjct: 626 EAALESGEEFP 636


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 167/382 (43%), Gaps = 40/382 (10%)

Query: 28  QLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +H+Y    +RL R+G+I E   +   M + GL      ++A     CK +  +  AF+ 
Sbjct: 311 NVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK-EGWVVSAFQL 369

Query: 84  FKLVPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             ++      P + T+N LM  +C  SK S  AF +LR V + GL               
Sbjct: 370 LSVMEKGNCKPNIRTYNELMEGLCRVSK-SYKAFLLLRRVVDNGLL-------------- 414

Query: 139 KSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                        PDRV +N L+    + G ++ AF++   MN+    ++PD  T  AL+
Sbjct: 415 -------------PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSA--GLEPDGFTFTALI 459

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                 G++++A  +   + K  I      +T  I+   + G  +  C ++++M +   +
Sbjct: 460 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 519

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
                 +  +D  G   K+  A  +L +    G+   +++++ L+     A     +L++
Sbjct: 520 TTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKM 579

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            E MK     P V T   +I  LC+  ++ +   +L  M S G+ PN  TY++L+ A  +
Sbjct: 580 LERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVK 639

Query: 379 KDDVEVGLMLLSQAKEDGVIPN 400
              ++    ++S   ++G  PN
Sbjct: 640 AGRLDRAFQIVSTMVKNGCQPN 661



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 114/492 (23%), Positives = 203/492 (41%), Gaps = 72/492 (14%)

Query: 77  IKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           + EAFR F+ +       P   T+++L+     +   E AFQ+ + + E G +   + YT
Sbjct: 222 LGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 281

Query: 132 TLITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
            LI      G  D   + +         P+   +  LI    + G ++ A  V  +M   
Sbjct: 282 VLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLK- 340

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT------------------ 225
            H + P  IT  AL+      G V  A ++  ++ K N K                    
Sbjct: 341 -HGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSY 399

Query: 226 ---------------PE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
                          P+   Y I ++   + G    A ++++ M   G+ PD    +ALI
Sbjct: 400 KAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 459

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           D     G++E A  IL     +GIS+  +++++L+         +    L+E+M   +  
Sbjct: 460 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 519

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
            T  T N  + AL    +L +   +L  M   GL P+ +T++IL+    R  +  + L +
Sbjct: 520 TTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKM 579

Query: 389 LSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 446
           L + K+ G  PN+  +  II G+C+  R E+A T+   + SF        N +T   L+ 
Sbjct: 580 LERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVS----PNHFTYAVLV- 634

Query: 447 YREAIVAGTIP-TVEVVSKVL--GCL--QLPYNADIRERLVENLGVSADALKRSNLCSLI 501
            +  + AG +    ++VS ++  GC      Y+A +   ++ N  + A AL  +      
Sbjct: 635 -KAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSST------ 687

Query: 502 DGFGEYDPRAFS 513
              G+ D R+ S
Sbjct: 688 ---GDLDARSLS 696



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 143/320 (44%), Gaps = 15/320 (4%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--MF------ENVKPDRVVFNALIT 162
           AF V R +   G       Y T++    K+G V A  MF           D  V  +L+ 
Sbjct: 155 AFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVL 214

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
           A  +   +  AF V  +M+ E     P+ +T   L+     AG+++ A ++ + + +   
Sbjct: 215 ANCRRDDLGEAFRVFEKMSKE-ENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGC 273

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           + +   YT+ I      G  + A  + D+M  K  +P+    + LID     GK+E A  
Sbjct: 274 QPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANG 333

Query: 283 ILQEAKNQGISVGIISYSSLM-GACSNAKNWQ-KALELYEHMKSIKLKPTVSTMNALITA 340
           + ++    G+  GII++++L+ G C   + W   A +L   M+    KP + T N L+  
Sbjct: 334 VFRKMLKHGLCPGIITFNALINGYCK--EGWVVSAFQLLSVMEKGNCKPNIRTYNELMEG 391

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           LC   +  K   +L  +   GL P+ +TY+IL+    ++  + +   + +     G+ P+
Sbjct: 392 LCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPD 451

Query: 401 LVMFKCII-GMCSR-RYEKA 418
              F  +I G+C   R E+A
Sbjct: 452 GFTFTALIDGLCKLGRLEQA 471



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 94/441 (21%), Positives = 166/441 (37%), Gaps = 88/441 (19%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H +   + ++N LI    ++G +     LL  ME+       + Y+     +C+  K+ K
Sbjct: 341 HGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYK 400

Query: 79  EAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--------- 126
                 ++V N   P   T+N+L+           AF +   +  AGL+ D         
Sbjct: 401 AFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALID 460

Query: 127 --CKL------------------------YTTLITTCAKSGK---VDAMFENVKPDRVV- 156
             CKL                        +T LI    K GK   V  +FEN+  +R + 
Sbjct: 461 GLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLT 520

Query: 157 ----FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
               FN  + A G+   ++ A  +L +M    + + P  +T   L++    AG+   + +
Sbjct: 521 TAHTFNCFLDALGKDYKLNEANAMLGKMMK--YGLVPSVVTHTILIEGHCRAGETALSLK 578

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           + + + +         YTI IN     G  E A ++   M+  GV P+    + L+    
Sbjct: 579 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHV 638

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGA--CSNAKNWQKALE------------- 317
            AG+++ AF+I+      G       YS+L+     SN     +AL              
Sbjct: 639 KAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSE 698

Query: 318 ------LYEHM-------KSIKLK--------PTVSTMNALITALCDGDQLPKTMEVLSD 356
                 L  H+        ++K++        PT    N L+  LC   ++ +  ++  D
Sbjct: 699 ENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQD 758

Query: 357 MKSLGLCPNTITYSILLVACE 377
           M   GL P+    SI+   C+
Sbjct: 759 MVKHGLFPDKAISSIIEHYCK 779


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 173/384 (45%), Gaps = 17/384 (4%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK--SQKAIKEAFRFF--KLVPNPTL 92
           +G+I + +   + +   G   +D+V +    N +CK    KA  E  R    KLV  P +
Sbjct: 276 KGQIHQALHFHDKVIAMGF-HLDQVSYGTLINGLCKVGETKAALELLRRNDGKLV-QPDV 333

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM----- 146
             +N ++      K    AF +        +  D   Y  LI+     GK+ DA+     
Sbjct: 334 VMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNK 393

Query: 147 --FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
              +N+ PD   F+ L+    + G +  A +VLA M  +   + PD +T  +LM      
Sbjct: 394 MTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQ--SIKPDVVTYSSLMDGYCLV 451

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
            +V++A  ++  +    +    + Y I IN   +    + A  ++ +M  K + PD +  
Sbjct: 452 NEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITY 511

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           S+LID    +G++  A E++ E   +G    II+Y+S++ A     +  KA+ L   +K 
Sbjct: 512 SSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKG 571

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             ++P ++T   L+  LC   +L    +V  D+   G   +   Y++++     K   + 
Sbjct: 572 QGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDE 631

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII 408
            L LLS+ +E+G IP+   ++ II
Sbjct: 632 ALALLSKMEENGCIPDAKTYEIII 655



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 106/457 (23%), Positives = 183/457 (40%), Gaps = 113/457 (24%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF--------------- 84
           R+   + +L D +R  L D      +R FNV  S K + E  + F               
Sbjct: 192 RLCWIVLILWDFKRLFLKDF---LQSRLFNVLHSFKILIEYHKTFIKQKCLLKSFEISIE 248

Query: 85  ----KLVPNP------TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
               K++ N       TL+TF  +   C   +  + A      V   G   D   Y TLI
Sbjct: 249 YTPPKILKNGYEPDTITLTTF--IKGFCLKGQIHQ-ALHFHDKVIAMGFHLDQVSYGTLI 305

Query: 135 TTCAKSGKVDAMFEN--------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               K G+  A  E         V+PD V++N +I    +   V+ AFD+ +E  ++   
Sbjct: 306 NGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSK--R 363

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + PD  T  AL+      G++  A +++                                
Sbjct: 364 IFPDVFTYNALISGFCIVGKLKDAIDLF-------------------------------- 391

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM--- 303
              + MT K +IPD    S L+D     G ++ A  +L     Q I   +++YSSLM   
Sbjct: 392 ---NKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGY 448

Query: 304 -------------------GACSNAKNWQ-------------KALELYEHMKSIKLKPTV 331
                              G  +N +++              +A++L++ M   ++ P V
Sbjct: 449 CLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDV 508

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T ++LI  LC   ++   +E++ +M   G  P+ ITY+ +L A  +K  V+  + LL++
Sbjct: 509 ITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTK 568

Query: 392 AKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
            K  G+ P++  +  ++ G+C S + E AR + E +L
Sbjct: 569 LKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLL 605



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/382 (20%), Positives = 163/382 (42%), Gaps = 17/382 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           N L + G     ++LL   + K L+  D V Y+     +CK  K + +AF  +    +  
Sbjct: 306 NGLCKVGETKAALELLRRNDGK-LVQPDVVMYNTIIDGMCK-DKHVNDAFDLYSEKVSKR 363

Query: 90  --PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--- 144
             P + T+N L+S        + A  +   +    +  D   ++ L+    K G +    
Sbjct: 364 IFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAK 423

Query: 145 -----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                 M +++KPD V +++L+        V++A  +   M+     V  +  +   ++ 
Sbjct: 424 NVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHR--GVTANVQSYNIMIN 481

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                  VD A +++K +H   I      Y+  I+   ++G   +A  + D+M  +G  P
Sbjct: 482 GFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQP 541

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D +  ++++D       V+ A  +L + K QGI   + +Y+ L+     +   + A +++
Sbjct: 542 DIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVF 601

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E +        V     +I   CD     + + +LS M+  G  P+  TY I++++   K
Sbjct: 602 EDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEK 661

Query: 380 DDVEVGLMLLSQAKEDGVIPNL 401
           D+ ++   LL +    G++  L
Sbjct: 662 DENDMAEKLLREMIMRGLLVAL 683



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 118/253 (46%), Gaps = 21/253 (8%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV- 150
           + ++N++++     K  + A ++ + +    +  D   Y++LI    KSG++    E V 
Sbjct: 473 VQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVD 532

Query: 151 -------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                  +PD + +N+++ A  +   VD+A  +L ++  +   + PD  T   L+K    
Sbjct: 533 EMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQ--GIRPDMNTYTILVKGLCQ 590

Query: 204 AGQVDRAREVYK--MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           +G+++ AR+V++  ++  YN+      YT+ I      G ++ A ++   M + G IPD 
Sbjct: 591 SGKLEDARKVFEDLLVKGYNLD--VYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDA 648

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
                +I       + + A ++L+E   +G+ V +     L+ +    + W   L L+  
Sbjct: 649 KTYEIIILSLFEKDENDMAEKLLREMIMRGLLVALT--DDLVASILVRRTWCARLALWVT 706

Query: 322 -----MKSIKLKP 329
                ++ I+LKP
Sbjct: 707 FISLLLRVIELKP 719


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 184/421 (43%), Gaps = 28/421 (6%)

Query: 11  FPYPNGKHANYAHDVSEQ-----LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDK 61
           F + N + A+   ++ E      + +YN +I    +  RI     +L  M+ +G L    
Sbjct: 114 FNFKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIV 173

Query: 62  VYHARFFNVCKSQK---AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            Y+    ++C  +K   A+K   +       PT+ T+ +L+           A ++L  +
Sbjct: 174 TYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEM 233

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFENV--------KPDRVVFNALITACGQSGAV 170
              GL  D   Y  +I    K G V+   E +        KPD + +N L+ A    G  
Sbjct: 234 LARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKW 293

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVY 229
           D    ++AEM +     +P+ +T   L+ +    G++D A  V K MI K   + TP+ Y
Sbjct: 294 DEGEKLVAEMFS--RGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEK---ELTPDTY 348

Query: 230 TI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           +    I+   + G  + A  + D M   G +PD V  + ++      G    A EI  + 
Sbjct: 349 SYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKL 408

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           +  G    + SY++++ A  +  +  +AL +   M S  + P   T N+LI+ LC    +
Sbjct: 409 RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLV 468

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            + + +L DM+  G  P  I+Y+I+L+   +   ++  + + ++  E G  PN   +  +
Sbjct: 469 EEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILL 528

Query: 408 I 408
           I
Sbjct: 529 I 529



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 147/320 (45%), Gaps = 10/320 (3%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT------TCAKSGKVDAMFE-N 149
           +L   C + K +E  + +  LV + G   D  L T LI          K+ +V  + E +
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNK-GYTPDVILCTKLIKGFFNFKNIEKASRVMEILESH 132

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
            +PD   +NA+I+   +   ++ A  VL  M A      PD +T   ++ +  N  ++  
Sbjct: 133 TEPDVFAYNAVISGFCKVNRIEAATQVLNRMKA--RGFLPDIVTYNIMIGSLCNRRKLGL 190

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A +V   +   N   T   YTI I      G    A  + ++M  +G++PD    +A+I 
Sbjct: 191 ALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIR 250

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G VE A E++    ++G    +ISY+ L+ A  N   W +  +L   M S   +P
Sbjct: 251 GMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEP 310

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
              T + LI++LC   ++ + + VL  M    L P+T +Y  L+ A  ++  +++ + ++
Sbjct: 311 NKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIM 370

Query: 390 SQAKEDGVIPNLVMFKCIIG 409
                +G +P++V +  I+ 
Sbjct: 371 DYMISNGCLPDIVNYNTILA 390



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 142/336 (42%), Gaps = 15/336 (4%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTL 92
           I +G I+E + LLE+M  +GLL     Y+A    +CK     + A     L      P +
Sbjct: 218 IVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDV 277

Query: 93  STFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK 151
            ++N+L+ +     K  EG   V  +    G + +   Y+ LI++  + G++D     +K
Sbjct: 278 ISYNILLRAFLNQGKWDEGEKLVAEMFSR-GCEPNKVTYSILISSLCRFGRIDEAISVLK 336

Query: 152 --------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                   PD   ++ LI+A  + G +D A  ++  M +  +   PD +    ++ A   
Sbjct: 337 VMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMIS--NGCLPDIVNYNTILAALCK 394

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G  ++A E++  +           Y   I+     GD   A  +   M  KGV PDE+ 
Sbjct: 395 NGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEIT 454

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            ++LI      G VE A  +L + +  G    +ISY+ ++      +    A+ ++  M 
Sbjct: 455 YNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMI 514

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
               +P  +T   LI  +       + ME+ + + S
Sbjct: 515 EKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFS 550



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 93/439 (21%), Positives = 176/439 (40%), Gaps = 57/439 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR----FFNVCKSQKAIKEAFRFFKLVP 88
           NR  + G+ +E +  LE +  KG    D +   +    FFN     K I++A R  +++ 
Sbjct: 76  NRSCKAGKFNESLYFLECLVNKGYTP-DVILCTKLIKGFFNF----KNIEKASRVMEILE 130

Query: 89  N---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-- 143
           +   P +  +N ++S        E A QVL  ++  G   D   Y  +I +     K+  
Sbjct: 131 SHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGL 190

Query: 144 ------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
                   + +N  P  + +  LI A    G ++ A  +L EM A    + PD  T  A+
Sbjct: 191 ALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLA--RGLLPDMYTYNAI 248

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           ++     G V+RA E+                                      +T KG 
Sbjct: 249 IRGMCKEGMVERAAELIT-----------------------------------SLTSKGC 273

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD +  + L+    + GK +   +++ E  ++G     ++YS L+ +        +A+ 
Sbjct: 274 KPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAIS 333

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           + + M   +L P   + + LI+ALC   +L   + ++  M S G  P+ + Y+ +L A  
Sbjct: 334 VLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALC 393

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN 437
           +  +    L + ++ +  G  PN+  +  +I       +++R L       + G    E 
Sbjct: 394 KNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEI 453

Query: 438 KWTSLALMVYREAIVAGTI 456
            + SL   + R+ +V   I
Sbjct: 454 TYNSLISCLCRDGLVEEAI 472



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 77/148 (52%), Gaps = 1/148 (0%)

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           E  L  L++ +  AGK   +   L+   N+G +  +I  + L+    N KN +KA  + E
Sbjct: 68  ETHLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVME 127

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            ++S   +P V   NA+I+  C  +++    +VL+ MK+ G  P+ +TY+I++ +   + 
Sbjct: 128 ILES-HTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 186

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            + + L +L Q   D  +P ++ +  +I
Sbjct: 187 KLGLALKVLDQLLLDNCMPTVITYTILI 214


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 122/551 (22%), Positives = 222/551 (40%), Gaps = 77/551 (13%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           +   Y++DV   ++  + L  +G I+ C+D+ ++  +  L D      A  F     +  
Sbjct: 70  EKGKYSYDVETLINKLSSLPPRGSIARCLDVFKN--KLSLNDF-----ALVFKEFAQRGD 122

Query: 77  IKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            + + R FK +       P    + +++S+       E    +   +   G+      YT
Sbjct: 123 WQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYT 182

Query: 132 TLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGA-VDRAFDVLAEMNA 182
            LI +  ++GK +   E         V P  + +N +I +C + G   +    + AEM  
Sbjct: 183 ALINSYGRNGKYEVSLELLERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRH 242

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
           E   + PD +T   L+ AC+N G  D A  V++ +++  +      YT  ++   +    
Sbjct: 243 E--GIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRL 300

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA---FEILQEAKNQGISVGIISY 299
           +    +  +M   G +P+    + L++     G +E A   F ++QEA   G      +Y
Sbjct: 301 DKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEA---GCVPNAETY 357

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           S L+G       + +  EL+  MK    +P  +T N LI    +G    + + +  DM  
Sbjct: 358 SILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAE 417

Query: 360 LGLCPNTITYSILLVACER---KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
             + PN  TY  L+ AC +    DD +  L+ +S   E G+IP+   +  +I      Y 
Sbjct: 418 ENVEPNMETYEGLIFACGKGGLHDDAKKILLHMS---EKGMIPSSKAYTGVI----EAYG 470

Query: 417 KARTLNEHVLSFNS-----GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 471
           +A    E +++ N+      +P IE  + +L  M  R  +   T                
Sbjct: 471 QAAMYEEALVTLNTMNEMGSKPTIET-YNTLIYMFARGGLYKET---------------- 513

Query: 472 PYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKE 531
                  E ++  +G    A +R +   +I+GF     R     EEA    I   V  ++
Sbjct: 514 -------EAILLKMGDFGVARERDSFNGVIEGF-----RQGGQFEEA----IKAYVEMEK 557

Query: 532 IPVVVDARKLE 542
             +V D R LE
Sbjct: 558 SRLVPDERTLE 568



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 139/310 (44%), Gaps = 10/310 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P +S++N+L+   A   + E A  V RL+QEAG   + + Y+ L+    K G+ D + E 
Sbjct: 317 PEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVREL 376

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  N +PD   +N LI   G+ G       +  +M  E   V+P+  T   L+ AC
Sbjct: 377 FLEMKVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEE--NVEPNMETYEGLIFAC 434

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G  D A+++   + +  +  + + YT  I    Q   +E A    + M + G  P  
Sbjct: 435 GKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTI 494

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LI      G  +    IL +  + G++    S++ ++        +++A++ Y  
Sbjct: 495 ETYNTLIYMFARGGLYKETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVE 554

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+  +L P   T+ A+++  C    + +++E   ++K+ G+ PN + Y ++L    + D 
Sbjct: 555 MEKSRLVPDERTLEAVLSVYCIAGLVDESVEQFQEIKASGILPNVMCYCMMLAVYAKSDR 614

Query: 382 VEVGLMLLSQ 391
                 LL +
Sbjct: 615 WNEAYELLDE 624



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 69/334 (20%), Positives = 116/334 (34%), Gaps = 53/334 (15%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRF 83
           +YN LI      G   E + L  DM  + +    + Y    F   K      A K     
Sbjct: 391 TYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHM 450

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-- 141
            +    P+   +  ++     +   E A   L  + E G K   + Y TLI   A+ G  
Sbjct: 451 SEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGGLY 510

Query: 142 -KVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            + +A+        V  +R  FN +I    Q G  + A     EM  E   + PD  T+ 
Sbjct: 511 KETEAILLKMGDFGVARERDSFNGVIEGFRQGGQFEEAIKAYVEM--EKSRLVPDERTLE 568

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT---------------- 239
           A++     AG VD + E ++ I    I      Y + +   +++                
Sbjct: 569 AVLSVYCIAGLVDESVEQFQEIKASGILPNVMCYCMMLAVYAKSDRWNEAYELLDEMLTN 628

Query: 240 --------------GD------WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
                         GD      W+    V+D +  +G      F + L++     G+ E 
Sbjct: 629 RASNIHQVIGQMIKGDFDDDSNWQMVEYVFDKLNSEGCGLGMRFYNTLLEALWWLGQKER 688

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           A  +L EA  +G    +   S L+ +    + W+
Sbjct: 689 AVRVLGEATKRGHFPELFRKSKLVWSVDIHRMWE 722


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 112/515 (21%), Positives = 217/515 (42%), Gaps = 54/515 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + G++ +    L  ++ KG+   D V +    +   S+  ++EAF     +P    
Sbjct: 243 NALCKDGKMEKVGTFLSQVQEKGVYP-DIVTYNTLISAYSSKGLMEEAFELMNAMPGKGF 301

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
           +P + T+N +++        E A +V   +  +GL  D   Y +L+    K G V     
Sbjct: 302 SPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEK 361

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGAL 197
              D    +V PD V F+++++   +SG +D+A   F+ + E       + PD++    L
Sbjct: 362 VFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG-----LIPDNVIYTIL 416

Query: 198 MKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++     G +  A  +  +M+ +          TI    C +    E A  ++++MT++ 
Sbjct: 417 IQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGE-ADKLFNEMTERA 475

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD   L+ LID     G ++ A E+ Q+ K + I + +++Y++L+       +   A 
Sbjct: 476 LFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAK 535

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           E++  M S ++ PT  + + L+ ALC    L +   V  +M S  + P  +  + ++   
Sbjct: 536 EIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGY 595

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIE 436
            R  +   G   L +   +G +P+ + +  +I                      G  + E
Sbjct: 596 CRSGNASDGESFLEKMISEGFVPDCISYNTLI---------------------YGFVREE 634

Query: 437 NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADAL 492
           N   +  L+   E    G +P V   + +L       Q+     +  +++E  GV+ D  
Sbjct: 635 NMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIER-GVNPD-- 691

Query: 493 KRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
            RS    +I+GF   D    AF + +E    G  P
Sbjct: 692 -RSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSP 725



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/342 (23%), Positives = 158/342 (46%), Gaps = 16/342 (4%)

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           Q+ + +    F    + +LS   M+  +  S + S+    +LR+++ +G           
Sbjct: 96  QRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSG----------- 144

Query: 134 ITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++       +D+ F N   +  VF+ LI    Q+  +  A +    + ++   V  D   
Sbjct: 145 VSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSID--A 202

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+ +    G V+ A  VY+ I +  +        I +N   + G  E   +    + 
Sbjct: 203 CNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQ 262

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNW 312
           +KGV PD V  + LI      G +E AFE++     +G S G+ +Y++++ G C + K +
Sbjct: 263 EKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGK-Y 321

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           ++A E++  M    L P  +T  +L+   C    + +T +V SDM+S  + P+ + +S +
Sbjct: 322 ERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSM 381

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           +    R  +++  LM  +  KE G+IP+ V++  +I G C +
Sbjct: 382 MSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRK 423



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 97/450 (21%), Positives = 183/450 (40%), Gaps = 45/450 (10%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           T N++++        E     L  VQE G+  D   Y TLI+  +  G ++  FE     
Sbjct: 237 TLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAM 296

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                 P    +N +I    + G  +RA +V AEM      + PD  T  +L+      G
Sbjct: 297 PGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS--GLSPDSTTYRSLLMEACKKG 354

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            V    +V+  +   ++      ++  ++  +++G+ + A   ++ + + G+IPD V  +
Sbjct: 355 DVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYT 414

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LI      G +  A  +  E   QG ++ +++Y++++      K   +A +L+  M   
Sbjct: 415 ILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 474

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            L P   T+  LI   C    L   ME+   MK   +  + +TY+ LL    +  D++  
Sbjct: 475 ALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTA 534

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 444
             + +      ++P  + +  ++  +CS+ +                         + A 
Sbjct: 535 KEIWADMVSKEILPTPISYSILVNALCSKGH------------------------LAEAF 570

Query: 445 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLI 501
            V+ E I     PTV + + ++       NA   E  +E +   G   D +  +   +LI
Sbjct: 571 RVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYN---TLI 627

Query: 502 DGF--GEYDPRAFSLLE--EAASFGIVPCV 527
            GF   E   +AF L++  E    G+VP V
Sbjct: 628 YGFVREENMSKAFGLVKKMEEEQGGLVPDV 657



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 65/268 (24%), Positives = 115/268 (42%), Gaps = 26/268 (9%)

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D VF   LI     A K+  A E     +++G +V I + ++L+G+       + A  +Y
Sbjct: 165 DSVF-DLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVY 223

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + +    +   V T+N ++ ALC   ++ K    LS ++  G+ P+ +TY+ L+ A   K
Sbjct: 224 QEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSK 283

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIEN 437
             +E    L++     G  P +  +  +I G+C   +YE+A+ +   +L   SG      
Sbjct: 284 GLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEML--RSGLSPDST 341

Query: 438 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 497
            + SL +    EA   G +   E V            +D+R R      V  D +  S++
Sbjct: 342 TYRSLLM----EACKKGDVVETEKVF-----------SDMRSR-----DVVPDLVCFSSM 381

Query: 498 CSLIDGFGEYDPRAFSLLEEAASFGIVP 525
            SL    G  D +A          G++P
Sbjct: 382 MSLFTRSGNLD-KALMYFNSVKEAGLIP 408



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 76/182 (41%), Gaps = 8/182 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           PT  ++++L++   S      AF+V   +    +K    +  ++I    +SG        
Sbjct: 548 PTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESF 607

Query: 145 ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               + E   PD + +N LI    +   + +AF ++ +M  E   + PD  T  +++   
Sbjct: 608 LEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGF 667

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               Q+  A  V + + +  +      YT  IN      +   A  ++D+M ++G  PD+
Sbjct: 668 CRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDD 727

Query: 262 VF 263
            F
Sbjct: 728 KF 729


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 167/382 (43%), Gaps = 40/382 (10%)

Query: 28  QLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +H+Y    +RL R+G+I E   +   M + GL      ++A     CK +  +  AF+ 
Sbjct: 268 NVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCK-EGWVVSAFQL 326

Query: 84  FKLVPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             ++      P + T+N LM  +C  SK S  AF +LR V + GL               
Sbjct: 327 LSVMEKGNCKPNIRTYNELMEGLCRVSK-SYKAFLLLRRVVDNGLL-------------- 371

Query: 139 KSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                        PDRV +N L+    + G ++ AF++   MN+    ++PD  T  AL+
Sbjct: 372 -------------PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSA--GLEPDGFTFTALI 416

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                 G++++A  +   + K  I      +T  I+   + G  +  C ++++M +   +
Sbjct: 417 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 476

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
                 +  +D  G   K+  A  +L +    G+   +++++ L+     A     +L++
Sbjct: 477 TTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKM 536

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            E MK     P V T   +I  LC+  ++ +   +L  M S G+ PN  TY++L+ A  +
Sbjct: 537 LERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVK 596

Query: 379 KDDVEVGLMLLSQAKEDGVIPN 400
              ++    ++S   ++G  PN
Sbjct: 597 AGRLDRAFQIVSTMVKNGCQPN 618



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 114/492 (23%), Positives = 203/492 (41%), Gaps = 72/492 (14%)

Query: 77  IKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           + EAFR F+ +       P   T+++L+     +   E AFQ+ + + E G +   + YT
Sbjct: 179 LGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYT 238

Query: 132 TLITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
            LI      G  D   + +         P+   +  LI    + G ++ A  V  +M   
Sbjct: 239 VLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLK- 297

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT------------------ 225
            H + P  IT  AL+      G V  A ++  ++ K N K                    
Sbjct: 298 -HGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSY 356

Query: 226 ---------------PE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
                          P+   Y I ++   + G    A ++++ M   G+ PD    +ALI
Sbjct: 357 KAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 416

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           D     G++E A  IL     +GIS+  +++++L+         +    L+E+M   +  
Sbjct: 417 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 476

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
            T  T N  + AL    +L +   +L  M   GL P+ +T++IL+    R  +  + L +
Sbjct: 477 TTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKM 536

Query: 389 LSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 446
           L + K+ G  PN+  +  II G+C+  R E+A T+   + SF        N +T   L+ 
Sbjct: 537 LERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVS----PNHFTYAVLV- 591

Query: 447 YREAIVAGTIP-TVEVVSKVL--GCL--QLPYNADIRERLVENLGVSADALKRSNLCSLI 501
            +  + AG +    ++VS ++  GC      Y+A +   ++ N  + A AL  +      
Sbjct: 592 -KAHVKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSST------ 644

Query: 502 DGFGEYDPRAFS 513
              G+ D R+ S
Sbjct: 645 ---GDLDARSLS 653



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 143/320 (44%), Gaps = 15/320 (4%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--MF------ENVKPDRVVFNALIT 162
           AF V R +   G       Y T++    K+G V A  MF           D  V  +L+ 
Sbjct: 112 AFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVL 171

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
           A  +   +  AF V  +M+ E     P+ +T   L+     AG+++ A ++ + + +   
Sbjct: 172 ANCRRDDLGEAFRVFEKMSKE-ESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGC 230

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           + +   YT+ I      G  + A  + D+M  K  +P+    + LID     GK+E A  
Sbjct: 231 QPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANG 290

Query: 283 ILQEAKNQGISVGIISYSSLM-GACSNAKNWQ-KALELYEHMKSIKLKPTVSTMNALITA 340
           + ++    G+  GII++++L+ G C   + W   A +L   M+    KP + T N L+  
Sbjct: 291 VFRKMLKHGLCPGIITFNALINGYCK--EGWVVSAFQLLSVMEKGNCKPNIRTYNELMEG 348

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           LC   +  K   +L  +   GL P+ +TY+IL+    ++  + +   + +     G+ P+
Sbjct: 349 LCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPD 408

Query: 401 LVMFKCII-GMCSR-RYEKA 418
              F  +I G+C   R E+A
Sbjct: 409 GFTFTALIDGLCKLGRLEQA 428



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 94/441 (21%), Positives = 166/441 (37%), Gaps = 88/441 (19%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H +   + ++N LI    ++G +     LL  ME+       + Y+     +C+  K+ K
Sbjct: 298 HGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYK 357

Query: 79  EAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD--------- 126
                 ++V N   P   T+N+L+           AF +   +  AGL+ D         
Sbjct: 358 AFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALID 417

Query: 127 --CKL------------------------YTTLITTCAKSGK---VDAMFENVKPDRVV- 156
             CKL                        +T LI    K GK   V  +FEN+  +R + 
Sbjct: 418 GLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLT 477

Query: 157 ----FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
               FN  + A G+   ++ A  +L +M    + + P  +T   L++    AG+   + +
Sbjct: 478 TAHTFNCFLDALGKDYKLNEANAMLGKMMK--YGLVPSVVTHTILIEGHCRAGETALSLK 535

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           + + + +         YTI IN     G  E A ++   M+  GV P+    + L+    
Sbjct: 536 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHV 595

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGA--CSNAKNWQKALE------------- 317
            AG+++ AF+I+      G       YS+L+     SN     +AL              
Sbjct: 596 KAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSE 655

Query: 318 ------LYEHM-------KSIKLK--------PTVSTMNALITALCDGDQLPKTMEVLSD 356
                 L  H+        ++K++        PT    N L+  LC   ++ +  ++  D
Sbjct: 656 ENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQD 715

Query: 357 MKSLGLCPNTITYSILLVACE 377
           M   GL P+    SI+   C+
Sbjct: 716 MVKHGLFPDKAISSIIEHYCK 736


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 103/434 (23%), Positives = 191/434 (44%), Gaps = 63/434 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVP 88
           L ++G I    DL+  +++ G+     VY+A   ++CK  K + EA   F       L P
Sbjct: 330 LRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGK-LDEAESLFNNMGHKGLFP 388

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
           N    T+++L+         + A   L  + E G+KA    Y++LI+   K GK+     
Sbjct: 389 NDV--TYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKS 446

Query: 144 --DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             D M  N +KP+ V++ +LI+   + G +  AF +  EM  +   + P+  T  AL+  
Sbjct: 447 LFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGK--GISPNTYTFTALISG 504

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             +A ++  A +++  + ++N+      Y + I    + G+   A  + D+M +KG++PD
Sbjct: 505 LCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPD 564

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQ--------GISVGIISYSSLM-GAC----- 306
                 LI      G+V  A E + + + +        G    +++Y++L+ G C     
Sbjct: 565 TYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLM 624

Query: 307 -----------------------------SNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
                                        ++  N +KA++L++ +    L  TV T N L
Sbjct: 625 DKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTV-TYNIL 683

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           I   C   ++ +  EVL +M   G+ P+ I+YS ++    R+ D++  + L       GV
Sbjct: 684 IRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGV 743

Query: 398 IPNLVMFKCIIGMC 411
            P+ V +  +I  C
Sbjct: 744 NPDTVAYNFLIYGC 757



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 175/400 (43%), Gaps = 15/400 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N LIR  +    + L +++   GL     VY A   ++C+ +  I+      ++     +
Sbjct: 188 NGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCD 247

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
            +++T+N+ +     ++    A ++  L+   GL+AD   Y TL+    K  + +A    
Sbjct: 248 LSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEM 307

Query: 146 MFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           M E ++    P     + L+    + G +  AFD++ ++      V P      AL+ + 
Sbjct: 308 MNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKK--FGVAPSLFVYNALINSM 365

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G++D A  ++  +    +      Y+I I+   + G  + A      MT+ G+    
Sbjct: 366 CKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATV 425

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              S+LI      GK+ AA  +  E    G+   ++ Y+SL+           A  LY  
Sbjct: 426 YPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHE 485

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    + P   T  ALI+ LC  +++ +  ++  +M    + PN +TY++L+    ++ +
Sbjct: 486 MTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGN 545

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKAR 419
                 LL +  E G++P+   ++ +I G+CS  R  +AR
Sbjct: 546 TVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAR 585



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/409 (21%), Positives = 172/409 (42%), Gaps = 41/409 (10%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEA 80
           +YN  IR      R+ E +++   +  KGL      Y      +CK       ++ + E 
Sbjct: 252 TYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEM 311

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             F  +   P+ +  + L+       +   AF ++  V++ G+     +Y  LI +  K 
Sbjct: 312 IEFGFV---PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKD 368

Query: 141 GKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMN-----AEVHPV 187
           GK+D   ++F N+      P+ V ++ LI +  + G +D A   L +M      A V+P 
Sbjct: 369 GKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPY 428

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
                   +L+      G++  A+ ++  +    +K    +YT  I+   + G+   A  
Sbjct: 429 S-------SLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFR 481

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +Y +MT KG+ P+    +ALI    HA ++  A ++  E     +    ++Y+ L+    
Sbjct: 482 LYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHC 541

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-------- 359
              N  +A EL + M    L P   T   LI+ LC   ++ +  E ++D++         
Sbjct: 542 KEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEI 601

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            G  PN +TY+ L+    +   ++   +L  +      +PN   + C +
Sbjct: 602 EGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFL 650



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 163/372 (43%), Gaps = 26/372 (6%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +   ++ Y+ LI    + G++     L ++M   GL     +Y +     CK +  +  A
Sbjct: 421 IKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCK-EGELHNA 479

Query: 81  FRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           FR +  +     +P   TF  L+S +C +++ +E A ++   + E  +  +   Y  LI 
Sbjct: 480 FRLYHEMTGKGISPNTYTFTALISGLCHANRMAE-ANKLFGEMVEWNVIPNEVTYNVLIE 538

Query: 136 TCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K G     FE         + PD   +  LI+    +G V  A + + ++  E   +
Sbjct: 539 GHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKL 598

Query: 188 D------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
           +      P+ +T  AL+      G +D+A  + + +   N       Y   ++  +  G+
Sbjct: 599 NEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGN 658

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            E A  ++D + + G + + V  + LI      G+++ A E+L    + GIS   ISYS+
Sbjct: 659 IEKAIQLHDVLLE-GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYST 717

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           ++       + ++A++L+E M +  + P     N LI   C   +L K  E+  DM   G
Sbjct: 718 IIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRG 777

Query: 362 LCPNTITYSILL 373
           + PN  TY+ L+
Sbjct: 778 VKPNRATYNSLI 789



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 101/446 (22%), Positives = 174/446 (39%), Gaps = 62/446 (13%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AI 77
           V+  L  YN LI    + G++ E   L  +M  KGL   D  Y     + CK  K   A+
Sbjct: 351 VAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVAL 410

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
               +  ++    T+  ++ L+S          A  +   +   GLK +  +YT+LI+  
Sbjct: 411 HFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGY 470

Query: 138 AKSGKVDAMFE-------------------------------------------NVKPDR 154
            K G++   F                                            NV P+ 
Sbjct: 471 CKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNE 530

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           V +N LI    + G   RAF++L EM  +   + PD  T   L+    + G+V  ARE  
Sbjct: 531 VTYNVLIEGHCKEGNTVRAFELLDEMVEK--GLVPDTYTYRPLISGLCSTGRVSEAREFM 588

Query: 215 KMIH----KYN-IKGT-PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
             +     K N I+G  P V  YT  IN   + G  + A  +  +M     +P++   + 
Sbjct: 589 NDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYAC 648

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
            +D+    G +E A + L +   +G     ++Y+ L+         Q+A E+  +M    
Sbjct: 649 FLDYLTSEGNIEKAIQ-LHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSG 707

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           + P   + + +I   C    L + +++   M + G+ P+T+ Y+ L+  C    ++    
Sbjct: 708 ISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAF 767

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMC 411
            L       GV PN   +  +I G C
Sbjct: 768 ELRDDMMRRGVKPNRATYNSLIHGTC 793



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 144/341 (42%), Gaps = 28/341 (8%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF------KLVPNP 90
           ++G +     L  +M  KG+      + A    +C + + + EA + F       ++PN 
Sbjct: 472 KEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANR-MAEANKLFGEMVEWNVIPNE 530

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM---- 146
              T+N+L+       ++  AF++L  + E GL  D   Y  LI+    +G+V       
Sbjct: 531 V--TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFM 588

Query: 147 ------------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
                        E   P+ V + ALI    + G +D+A  +  EM A      P+  T 
Sbjct: 589 NDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSL--PNQNTY 646

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
              +    + G +++A +++ ++ +  +  T   Y I I    + G  + A  V  +M  
Sbjct: 647 ACFLDYLTSEGNIEKAIQLHDVLLEGFLANTV-TYNILIRGFCKLGRIQEAAEVLVNMID 705

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G+ PD +  S +I      G ++ A ++ +   N+G++   ++Y+ L+  C       K
Sbjct: 706 SGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTK 765

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           A EL + M    +KP  +T N+LI   C    +  T +  S
Sbjct: 766 AFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTADYFS 806



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 72/149 (48%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M   G++P    LS +++      +   A  +  E  + G+   +  Y++++ +    K+
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           + +A E+   M+S     +V+T N  I  LC   ++ + +E+ + +   GL  +  TY  
Sbjct: 231 FIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT 290

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           L++   + ++ E G  ++++  E G +P+
Sbjct: 291 LVLGLCKVEEFEAGEEMMNEMIEFGFVPS 319


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 178/413 (43%), Gaps = 35/413 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK----------A 76
           +YN L+    + G++ + +DLL +M+R+G    D  Y+     + K  +           
Sbjct: 236 TYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEM 295

Query: 77  IKEAFRFFKLVPNPTL-STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           +K   +      NP +   FN  M   A S   E   +        G       Y + I 
Sbjct: 296 LKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLK--------GASPTVATYNSFIY 347

Query: 136 TCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K G++        D +  N+ PD V +N LI    + G + +AF +  E+ +    +
Sbjct: 348 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIY--L 405

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            P  +T   L+      G+++ A+++   +    I      YTI +N   + G    A  
Sbjct: 406 FPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQE 465

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
            +D+M  +G+  D    +  I      G    AF + +E   +G    +I Y+ ++    
Sbjct: 466 FFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLC 525

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
              N ++A EL + M S  + P   T  ++I A  +  +L K  E+  +M S GL P+ +
Sbjct: 526 KLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVV 585

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKA 418
           TY++L+     K  +E   +  S+ +E G++PN++ +  +I G+C  RR ++A
Sbjct: 586 TYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQA 638



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 167/389 (42%), Gaps = 23/389 (5%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LI     +G ++E + L E+M  KG       Y++  + +CK  +      +   
Sbjct: 305 YTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSD 364

Query: 86  LVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141
           ++ N   P + ++N L+       +   AF +   ++   L      Y TL+    + G 
Sbjct: 365 MLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGE 424

Query: 142 -------KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
                  KV+ + E + PD V +  L+    + G++  A +   EM  E   ++ D    
Sbjct: 425 LEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHE--GLELDSYAY 482

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDD 251
              +      G   RA   + +  +   KG P    +Y + ++   + G+ E A  +   
Sbjct: 483 ATRIVGELKLGDTSRA---FSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQK 539

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M   GVIPD V  +++I      G++    EI  E  ++G++  +++Y+ L+   +    
Sbjct: 540 MVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGR 599

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            ++A   +  M+   + P V T N+LI  LC   ++ +     ++M   G+ PN  +Y+I
Sbjct: 600 LERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTI 659

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           L+       + +  L L  Q  + GV P+
Sbjct: 660 LINENCNMGNWQEALSLYKQMLDRGVQPD 688



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 175/395 (44%), Gaps = 21/395 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRF 83
           +YN LI    ++G   +   L+ +M + GL      Y+     +FN     +A+      
Sbjct: 271 TYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEM 330

Query: 84  FKLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141
                +PT++T+N  +  +C   + S+ A Q L  +    L  D   Y TLI    + G 
Sbjct: 331 VLKGASPTVATYNSFIYGLCKLGRMSD-AMQQLSDMLANNLLPDVVSYNTLIYGYCRLGN 389

Query: 142 --KVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
             K   +F+ ++     P  V +N L+    + G ++ A  +  EM  E   + PD +T 
Sbjct: 390 LMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINE--GIAPDIVTY 447

Query: 195 GALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             L+      G +  A+E + +M+H+  ++     Y   I    + GD   A S+ ++M 
Sbjct: 448 TILVNGSCKMGSLSMAQEFFDEMLHE-GLELDSYAYATRIVGELKLGDTSRAFSLQEEML 506

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            KG  PD +  + ++D     G +E A E+LQ+  + G+    ++Y+S++ A       +
Sbjct: 507 AKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLR 566

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           K  E++  M S  L P+V T   LI       +L +     S+M+  G+ PN ITY+ L+
Sbjct: 567 KGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLI 626

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
               +   ++      ++  E G+ PN   +  +I
Sbjct: 627 NGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILI 661



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 157/368 (42%), Gaps = 56/368 (15%)

Query: 26  SEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  + +YN  I    + GR+S+ +  L DM    LL     Y+   +  C+    +K AF
Sbjct: 336 SPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMK-AF 394

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             F  + +    PT+ T+N L+       + E A Q+   +   G+  D   YT L+   
Sbjct: 395 LLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGS 454

Query: 138 AKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD- 188
            K G +        + + E ++ D   +   I    + G   RAF +  EM A+  P D 
Sbjct: 455 CKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDL 514

Query: 189 --------------------------------PDHITIGALMKACANAGQVDRAREV-YK 215
                                           PD++T  +++ A    G++ + RE+ Y+
Sbjct: 515 IIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYE 574

Query: 216 MIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           M+ K     TP V  YT+ I+  +  G  E A   + +M +KG++P+ +  ++LI+    
Sbjct: 575 MLSK---GLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGLCK 631

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
             +++ A+    E   +GI     SY+ L+    N  NWQ+AL LY+ M    ++P   T
Sbjct: 632 VRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCT 691

Query: 334 MNALITAL 341
            +AL+  L
Sbjct: 692 HSALLKQL 699



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 119/259 (45%), Gaps = 3/259 (1%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           + + LI    +   V++   V  +M      + PD      +++   +   + +A EVY+
Sbjct: 166 ILDLLIWVYSKKSMVEQCLSVFDKMIKS--RLSPDVKNCNRILRILRDKDLMSKAVEVYR 223

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            + ++ IK T   Y   ++   + G  +    +  +M ++G  P++V  + LI+     G
Sbjct: 224 TMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKG 283

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           + E A  ++ E    G+ V   +Y+ L+    N     +AL L E M      PTV+T N
Sbjct: 284 EFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYN 343

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
           + I  LC   ++   M+ LSDM +  L P+ ++Y+ L+    R  ++    +L  + +  
Sbjct: 344 SFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSI 403

Query: 396 GVIPNLVMFKCII-GMCSR 413
            + P +V +  ++ G+C +
Sbjct: 404 YLFPTIVTYNTLLDGLCRQ 422



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 121/285 (42%), Gaps = 29/285 (10%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P +   N ++ +         A +V R + E G+K     Y TL+ +  K GK      
Sbjct: 196 SPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGK------ 249

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
                                V +  D+L+EM  +     P+ +T   L+   +  G+ +
Sbjct: 250 ---------------------VQQGLDLLSEM--QRRGCAPNDVTYNVLINGLSKKGEFE 286

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
           +A+ +   + K  +K +   Y   I      G    A S+ ++M  KG  P     ++ I
Sbjct: 287 QAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFI 346

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                 G++  A + L +     +   ++SY++L+       N  KA  L++ ++SI L 
Sbjct: 347 YGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLF 406

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           PT+ T N L+  LC   +L    ++  +M + G+ P+ +TY+IL+
Sbjct: 407 PTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILV 451



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 94/202 (46%), Gaps = 10/202 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P L  +N+++       + E A ++L+ +   G+  D   YT++I    ++G++      
Sbjct: 512 PDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREI 571

Query: 144 --DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             + + + + P  V +  LI      G ++RAF   +EM  +   + P+ IT  +L+   
Sbjct: 572 FYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEK--GILPNVITYNSLINGL 629

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               ++D+A   +  + +  I      YTI IN     G+W+ A S+Y  M  +GV PD 
Sbjct: 630 CKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDS 689

Query: 262 VFLSALIDFAGHAGKVEAAFEI 283
              SAL+   G   K++A  ++
Sbjct: 690 CTHSALLKQLGKDCKLQAVRQL 711



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 20/232 (8%)

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           ++ L +++ M   +L P V   N ++  L D D + K +EV   M   G+ P  +TY+ L
Sbjct: 181 EQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTL 240

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVL---- 426
           L +  +   V+ GL LLS+ +  G  PN V +  +I   S++  +E+A+ L   +L    
Sbjct: 241 LDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGL 300

Query: 427 --SFNSGRPQIENKWT----SLALMVYREAIVAGTIPTVEVV-SKVLGCLQLPYNADIRE 479
             S  +  P I   +     + AL +  E ++ G  PTV    S + G  +L   +D  +
Sbjct: 301 KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQ 360

Query: 480 RLVENLG--VSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVPCV 527
           +L + L   +  D +  +   +LI G+       +AF L +E  S  + P +
Sbjct: 361 QLSDMLANNLLPDVVSYN---TLIYGYCRLGNLMKAFLLFDELRSIYLFPTI 409


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 170/389 (43%), Gaps = 17/389 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N   R+G++ +  +L  +M  +G+      Y      +CK+Q   +    F +++     
Sbjct: 169 NGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVK 228

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------- 142
           P   T+N L+    S+   +   Q+L  +   GL+ DC  Y  L+    K+G+       
Sbjct: 229 PDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLF 288

Query: 143 VDAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D+MF + +KPD  ++  L+      GA+      L  M    + V P+      +  A 
Sbjct: 289 FDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVG--NGVSPNRRIFNIMFCAY 346

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIP 259
           A    ++ A  ++  + +  +  +P+V +    I+   + G  + A   ++ M  +GV P
Sbjct: 347 AKKAMIEEAMHIFNKMRQQGL--SPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTP 404

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    S+L+      GK E A E+  E  +QGI V  + +++LM    N     +A  L 
Sbjct: 405 NIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLI 464

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M  + ++P V + N L+   C   ++ +  ++L  M S GL PN  TY+ILL    + 
Sbjct: 465 DLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKA 524

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             V+    L  +    GV P +  +  I+
Sbjct: 525 RRVDDAYSLFREMLMKGVTPVVATYNTIL 553



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 171/385 (44%), Gaps = 15/385 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           L + GR  E     + M RKG+   D   +A   +   ++ A+ E   F  L+     +P
Sbjct: 276 LCKNGRCREARLFFDSMFRKGI-KPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSP 334

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD------ 144
               FN++    A     E A  +   +++ GL  D   +  LI    K G+VD      
Sbjct: 335 NRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQF 394

Query: 145 --AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
              + E V P+  VF++L+      G  ++A ++  E+  +   VD   +    LM    
Sbjct: 395 NQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDA--VFFNTLMCNLC 452

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           N G+V  A+ +  ++ +  ++     Y   +     TG  + A  + D M   G+ P+E 
Sbjct: 453 NEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEF 512

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L+     A +V+ A+ + +E   +G++  + +Y++++        + +A ELY +M
Sbjct: 513 TYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNM 572

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            + + K  + T N ++  LC  + + +  ++   + S     +++T++I++ A  +    
Sbjct: 573 INSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRK 632

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCI 407
           E  + L +     G++P++V ++ I
Sbjct: 633 EDAMDLFATISAYGLVPDVVTYRLI 657



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 151/356 (42%), Gaps = 25/356 (7%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL------YTTLITTCAKSGKVD 144
           ++  FN L++V + +  S  + +V+ L      +   K+      Y+ LI    + G+++
Sbjct: 48  SVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPNACTYSILIGCFCRMGRLE 107

Query: 145 AMFENV--------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
             F           + + +V + L+     +  VD A D+L    +E     PD +    
Sbjct: 108 HGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLLRMSE-FGCPPDVVAYNT 166

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFACSVYDDMTK 254
           ++      GQV++A  ++  +    I      YT  I+  C +Q  D   A  V+  M  
Sbjct: 167 VINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDR--AKGVFQQMID 224

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           +GV PD    + LI      GK +   ++L+E    G+    I+Y+ L+         ++
Sbjct: 225 RGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCRE 284

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A   ++ M    +KP V+    L+        L +    L  M   G+ PN   ++I+  
Sbjct: 285 ARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFC 344

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFN 429
           A  +K  +E  + + ++ ++ G+ P++V F  +I  +C     K   +++ VL FN
Sbjct: 345 AYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALC-----KLGRVDDAVLQFN 395



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 65/341 (19%), Positives = 143/341 (41%), Gaps = 13/341 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLS 93
           ++  I E + +   M ++GL      + A    +CK  +      +F +++     P + 
Sbjct: 348 KKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIF 407

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAM 146
            F+ L+    +    E A ++   V + G+  D   + TL+      G+V       D M
Sbjct: 408 VFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLM 467

Query: 147 FE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               V+P+ + +N L+     +G +D A  +L  M +  + + P+  T   L++    A 
Sbjct: 468 IRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVS--NGLKPNEFTYTILLRGYCKAR 525

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +VD A  +++ +    +      Y   ++   QTG +  A  +Y +M       D    +
Sbjct: 526 RVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYN 585

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            +++       V+ AF++ +   ++   +  ++++ ++GA       + A++L+  + + 
Sbjct: 586 IILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAY 645

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            L P V T   +   L +   L +   + S M+  G  PN+
Sbjct: 646 GLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNS 686



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 124/306 (40%), Gaps = 48/306 (15%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN L+      GRI E   LL+ M   GL   +  Y       CK+++ + +A+  F+ 
Sbjct: 478 SYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARR-VDDAYSLFRE 536

Query: 87  V----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P ++T+N ++          G FQ  R   EA      +LY  +I +      
Sbjct: 537 MLMKGVTPVVATYNTIL---------HGLFQTGRF-SEAN-----ELYLNMINS------ 575

Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGALMKA 200
                   K D   +N ++    ++  VD AF +   + ++    DP  D +T   ++ A
Sbjct: 576 ------RTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSK----DPQLDSVTFNIMIGA 625

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYT---IAINCCSQTGDWEFACSVYDDMTKKGV 257
               G+ + A +++  I  Y +   P+V T   IA N   +    EF   ++  M K G 
Sbjct: 626 LLKGGRKEDAMDLFATISAYGL--VPDVVTYRLIAENLIEEGSLGEFD-GLFSAMEKSGT 682

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P+   L+AL+    H G +  A   L +   +  S+   + S L+   S  +    A  
Sbjct: 683 APNSHMLNALVRRLLHRGDISRAGVYLYKLDEKNFSLEASTTSMLISLYSRGEYQPHAKS 742

Query: 318 LYEHMK 323
           L E  +
Sbjct: 743 LPEKYR 748


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 161/365 (44%), Gaps = 20/365 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    ++G   +  +LL  M +KGL+     Y     ++C + + + EA +F   
Sbjct: 543 TYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGR-VCEAKKFIDD 601

Query: 87  VPNPTLSTFNMLMSVCASSKDSEG----AFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +         M  S        EG    A  V R + + G+  D   Y  LI    K   
Sbjct: 602 LHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQD 661

Query: 143 VDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
             A+F        + ++PD+V++ ++I    ++G+V +AF +   M  E     P+ +T 
Sbjct: 662 TSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDE--GCTPNIVTY 719

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+     AG +D+A  ++K +   N       Y   ++  ++ G  E A  +++DM K
Sbjct: 720 TTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK 779

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G++ + V  + L+      G+VE A ++L E  +  I    I+YS+++  C    N   
Sbjct: 780 -GLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDG 838

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A+E ++ M +  LKP     N LI   C   +L K  E+  DM   G+ PN  T+  L  
Sbjct: 839 AIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSH 898

Query: 375 ACERK 379
              RK
Sbjct: 899 GASRK 903



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 99/440 (22%), Positives = 187/440 (42%), Gaps = 52/440 (11%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           A+DV+  +   +   R+G++   I  L  M   G+      Y++     CK    +  A 
Sbjct: 399 ANDVTYSI-LIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGN-LSAAV 456

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
            FF  + +    PT+ ++  L+S   +      AF++   +   G+  +   +TTLI+  
Sbjct: 457 SFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISAL 516

Query: 138 AKSGKV-------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            ++ ++       D M E N+ P+ V +N +I    + G   +AF++L +M  +   + P
Sbjct: 517 FRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQK--GLVP 574

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D  T   L+ +  + G+V  A++    +H+ + K     Y+  ++   + G    A  V 
Sbjct: 575 DTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVC 634

Query: 250 DDMTKKGV-----------------------------------IPDEVFLSALIDFAGHA 274
            +M K+GV                                    PD+V  +++ID    A
Sbjct: 635 REMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKA 694

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G V+ AF I     ++G +  I++Y++L+     A    KA  L++ M      P   T 
Sbjct: 695 GSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTY 754

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
              +  L     + K +++ +DM   GL  NT++Y+IL+    +   VE    LL +  +
Sbjct: 755 CCFLDHLAREGSMEKAVQLHNDMLK-GLLANTVSYNILVRGFCKLGRVEEATKLLDEMID 813

Query: 395 DGVIPNLVMFKCIIGMCSRR 414
           + + P+ + +  II  C RR
Sbjct: 814 NAIFPDCITYSTIIYQCCRR 833



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 106/224 (47%), Gaps = 1/224 (0%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P    + +L++     G+V  A ++   + K     +  VY   IN   + G ++ A  +
Sbjct: 329 PTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELL 388

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           + +M +KG+  ++V  S LID     GK++ A   L +    GI + +  Y+SL+     
Sbjct: 389 FKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCK 448

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
             N   A+  ++ M    LKPTV +  +LI+  C+  +L +   +  +M   G+ PNT T
Sbjct: 449 LGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYT 508

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           ++ L+ A  R + +     L  +  E  ++PN V +  +I G C
Sbjct: 509 FTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHC 552



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/251 (27%), Positives = 111/251 (44%), Gaps = 10/251 (3%)

Query: 131 TTLITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
           ++L+    + GKV   F+ V         P   V+NALI +  + G  D A  +  EM  
Sbjct: 335 SSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGE 394

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
           +   +  + +T   L+ +    G++D A      +    IK T   Y   IN   + G+ 
Sbjct: 395 K--GLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNL 452

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
             A S +D+M  KG+ P  V  ++LI    + GK+  AF +  E   +GI+    ++++L
Sbjct: 453 SAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTL 512

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           + A   A     A  L++ M    + P   T N +I   C      K  E+L+ M   GL
Sbjct: 513 ISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGL 572

Query: 363 CPNTITYSILL 373
            P+T TY  L+
Sbjct: 573 VPDTYTYRPLI 583



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 142/328 (43%), Gaps = 11/328 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGKVDAM 146
            +N+L+     +K    A ++   + + GL A    Y TL+    K       +G +D M
Sbjct: 263 VYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEM 322

Query: 147 FE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
            E    P     ++L+    + G V  AFD++  +  +V  + P      AL+ +    G
Sbjct: 323 IELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVK-KVGAM-PSLFVYNALINSLCKDG 380

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           + D A  ++K + +  +      Y+I I+   + G  + A      M   G+       +
Sbjct: 381 KFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYN 440

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           +LI+     G + AA     E  ++G+   ++SY+SL+    N     +A  LY  M   
Sbjct: 441 SLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGK 500

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + P   T   LI+AL   +++     +  +M    + PN +TY++++    ++ +    
Sbjct: 501 GIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKA 560

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCS 412
             LL+Q  + G++P+   ++ +I  +CS
Sbjct: 561 FELLNQMVQKGLVPDTYTYRPLISSLCS 588



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 79/417 (18%), Positives = 166/417 (39%), Gaps = 33/417 (7%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARF- 67
           L+F    G H N+ H         + L+          LL+ +  +G LD  +V+ A   
Sbjct: 89  LRFFNFLGLHKNFNHSTMSFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALLD 148

Query: 68  -FNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
            F  C    ++                 F++L+      K    +  + RL+++  L   
Sbjct: 149 CFEKCDFISSL----------------GFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQ 192

Query: 127 CKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLA 178
            +    ++   AK  +VD +           ++PD  ++ A+I +  +     +A +++ 
Sbjct: 193 VRTLGEVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQ 252

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY-TIAINCCS 237
            M +     D + +    L+       +V  A E+   + +  +  +   Y T+ +  C 
Sbjct: 253 RMESS----DLNVVVYNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLC- 307

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           +  ++E    V D+M + G +P E  LS+L++     GKV  AF+++   K  G    + 
Sbjct: 308 KVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLF 367

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
            Y++L+ +      + +A  L++ M    L     T + LI + C   +L   +  L  M
Sbjct: 368 VYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKM 427

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
              G+      Y+ L+    +  ++   +    +  + G+ P +V +  +I G C++
Sbjct: 428 IMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNK 484


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 167/347 (48%), Gaps = 15/347 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P++ T+N L++ C        A ++   +    +  +   YT++I    + G +      
Sbjct: 176 PSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIGDAERL 235

Query: 144 -DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKA 200
            DAM E  ++P++  +N L++   Q   V+ AF +  E+ N+ +    P+ +    L+  
Sbjct: 236 FDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGL---IPNAVVFTTLIDG 292

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              A +   A+++++ + ++ +  T  VY   ++   ++GD + A S+Y +MT+ G+ PD
Sbjct: 293 FCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPD 352

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           E   S ++      G+++ A   L+  +  G+++   +Y++L+       N ++AL    
Sbjct: 353 EFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCT 412

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M  + ++P V + ++LI       ++   M + ++M + G+ PN +TY+ L+    +  
Sbjct: 413 RMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNG 472

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNEH 424
            ++       +  E+G+ PN +    ++ G+C  +R  +  R + EH
Sbjct: 473 GIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFVMEH 519



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 97/194 (50%), Gaps = 5/194 (2%)

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           SQ G  + A  V+  +     +P     +A++D    A +   A+E+  E   +G+   +
Sbjct: 122 SQMGLLDEALYVFRRLWTLPALPA---CNAVLDGLVKARRSRCAWELFDEMLRRGMVPSV 178

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           ++Y++L+ AC       KA E+++ M + ++ P V T  ++I  LC+   +     +   
Sbjct: 179 VTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIGDAERLFDA 238

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRR 414
           MK  G+ PN  TY++L+    + DDV    +L  +    G+IPN V+F  +I G C ++R
Sbjct: 239 MKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKR 298

Query: 415 YEKARTLNEHVLSF 428
           + +A+ +   +  F
Sbjct: 299 FSEAKDMFRDMPRF 312



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 173/439 (39%), Gaps = 75/439 (17%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI     QG +++  ++ + M  + + D + + +     V   +  I +A R F  
Sbjct: 180 TYNTLINACRYQGAVAKAQEMWDQMVARQI-DPNVITYTSMICVLCEEGCIGDAERLFDA 238

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T+N+LMS      D   AF + + +  +GL  +  ++TTLI    K+ +
Sbjct: 239 MKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLIDGFCKAKR 298

Query: 143 VDA---MFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
                 MF +     V P   V+N+L+    +SG    A  +  EM      + PD  T 
Sbjct: 299 FSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTR--LGLCPDEFTC 356

Query: 195 GALMKACANAGQVDRAREVYK----------------MIHKYNIKGT------------- 225
             +++   + GQ+  A    +                +I +Y   G              
Sbjct: 357 SIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTE 416

Query: 226 ----PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKV 277
               P V  Y+  I+  S+ G  + A ++Y +M  KG+ P+ V  +ALI   GHA  G +
Sbjct: 417 VGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIH--GHAKNGGI 474

Query: 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK----------- 326
           +AAF   +E    GIS   I+ S L+         Q A+        IK           
Sbjct: 475 DAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFVMEHSGIKYSDIHSFFSNF 534

Query: 327 ------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
                 L P  +    LI  L    Q  +  ++ S M+  G+  ++ TY++L+       
Sbjct: 535 TTEEEPLIPNSAIYMTLIYGLYLDGQHYEAGKLFSYMRKSGMISDSFTYTLLIRGQCMLG 594

Query: 381 DVEVGLMLLSQAKEDGVIP 399
            V   +ML +   + GV P
Sbjct: 595 YVLNAMMLYADMMKIGVKP 613



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 100/216 (46%), Gaps = 5/216 (2%)

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
           +G L+ A +  G +D A  V++ +  + +   P    + ++   +      A  ++D+M 
Sbjct: 114 LGVLVIALSQMGLLDEALYVFRRL--WTLPALPACNAV-LDGLVKARRSRCAWELFDEML 170

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           ++G++P  V  + LI+   + G V  A E+  +   + I   +I+Y+S++          
Sbjct: 171 RRGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIG 230

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A  L++ MK   ++P   T N L++  C GD +     +  ++ + GL PN + ++ L+
Sbjct: 231 DAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVVFTTLI 290

Query: 374 VA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              C+ K   E   M     +  GV P + ++  ++
Sbjct: 291 DGFCKAKRFSEAKDMFRDMPRF-GVAPTVPVYNSLM 325


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 142/293 (48%), Gaps = 6/293 (2%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P   VF+AL +A  + G ++ A +   +M      V P   +  AL+   +  G+ D +R
Sbjct: 183 PGFGVFDALFSALIELGMLEEASECFLKMRK--FRVFPKPRSCNALLHRLSKVGRGDLSR 240

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           + +K +    IK +   Y I I+   + GD E A S++  M + G  PD V  ++LID  
Sbjct: 241 KFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGH 300

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
           G  G ++    I ++ K+      +I+Y++L+      +   KA E    MK+  LKP V
Sbjct: 301 GKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNV 360

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T +  I A C    L + ++   DM+ + L PN  TY+ L+ A  +  ++   L L+ +
Sbjct: 361 VTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEE 420

Query: 392 AKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSL 442
             + G+  N+V +  ++ G+C   R ++A  +   +L  N+G    +  +T+L
Sbjct: 421 ILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAML--NAGVAPNQETYTAL 471



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/419 (22%), Positives = 175/419 (41%), Gaps = 50/419 (11%)

Query: 2   QDGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLL 57
           ++G   M +  +   K A +  D+     +YN LI    + G + ECI + E M+     
Sbjct: 267 KEGDLEMARSLFTQMKEAGFTPDIV----TYNSLIDGHGKLGLLDECICIFEQMK----- 317

Query: 58  DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           D D                            +P + T+N L++     +    AF+ L  
Sbjct: 318 DAD---------------------------CDPDVITYNALINCFCKFERMPKAFEFLHE 350

Query: 118 VQEAGLKADCKLYTTLITTCAKSGK--------VDAMFENVKPDRVVFNALITACGQSGA 169
           ++  GLK +   Y+T I    K G         VD     + P+   + +LI A  ++G 
Sbjct: 351 MKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGN 410

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +  A  ++ E+      +  + +T  AL+      G++  A EV++ +    +    E Y
Sbjct: 411 LAEALKLVEEILQA--GIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETY 468

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           T  ++   +  + E+A  +  +M +K + PD +    ++    +  ++E A  ++ E K 
Sbjct: 469 TALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKE 528

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            GI+   + Y++LM A   +    +AL L E M  + L  T  T  ALI  LC    + +
Sbjct: 529 SGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQE 588

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            M     M  +GL PN   Y+ L+    + +  EV   L  +  + G++P+ + +  +I
Sbjct: 589 AMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALI 647



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/461 (21%), Positives = 208/461 (45%), Gaps = 32/461 (6%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMF 147
           ++ T+N+++       D E A  +   ++EAG   D   Y +LI    K G +D    +F
Sbjct: 254 SVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIF 313

Query: 148 ENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           E +K     PD + +NALI    +   + +AF+ L EM A  + + P+ +T    + A  
Sbjct: 314 EQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKA--NGLKPNVVTYSTFIDAFC 371

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G +  A + +  + +  +      YT  I+   + G+   A  + +++ + G+  + V
Sbjct: 372 KEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVV 431

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +AL+D     G+++ A E+ +   N G++    +Y++L+     AK  + A ++ + M
Sbjct: 432 TYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEM 491

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           K   +KP +     ++  LC+  +L +   ++ ++K  G+  N + Y+ L+ A  +    
Sbjct: 492 KEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQA 551

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQI------ 435
              L LL +  + G+I   V +  +I G+C     +    +   +S    +P +      
Sbjct: 552 TEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTAL 611

Query: 436 -----ENKWTSLALMVYREAIVAGTIPTVEVVSKVL------GCLQLPYNADIRERLVEN 484
                +N    +A  ++ E +  G +P     + ++      G LQ   N  +R+R++E 
Sbjct: 612 VDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALN--LRDRMIE- 668

Query: 485 LGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
           +G+  D    + L   +   G+   +A +LL+E    G++P
Sbjct: 669 IGMELDLHAYTALIWGLSHSGQVQ-KARNLLDEMIGKGVLP 708



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/402 (21%), Positives = 178/402 (44%), Gaps = 21/402 (5%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D    + +YN LI    +  R+ +  + L +M+  GL   + V ++ F +    +  ++E
Sbjct: 320 DCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGL-KPNVVTYSTFIDAFCKEGMLQE 378

Query: 80  AFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A +FF    ++   P   T+  L+     + +   A +++  + +AG+K +   YT L+ 
Sbjct: 379 AIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLD 438

Query: 136 TCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              + G++    E         V P++  + AL+    ++  ++ A D+L EM  +   +
Sbjct: 439 GLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKC--I 496

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            PD +  G ++    N  +++ A+ +   I +  I     +YT  ++   ++G    A +
Sbjct: 497 KPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALT 556

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GAC 306
           + ++M   G+I  EV   ALID    +G V+ A          G+   +  Y++L+ G C
Sbjct: 557 LLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLC 616

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            N   ++ A +L++ M    + P      ALI        L + + +   M  +G+  + 
Sbjct: 617 KN-NCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDL 675

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             Y+ L+        V+    LL +    GV+P+ V++ C+I
Sbjct: 676 HAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLI 717



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 153/350 (43%), Gaps = 49/350 (14%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R F++ P P   + N L+   +     + + +  + +  AG+K     Y  +I    K G
Sbjct: 212 RKFRVFPKP--RSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEG 269

Query: 142 KVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            ++   ++F  +K     PD V +N+LI   G+ G +D    +  +M       DPD IT
Sbjct: 270 DLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDA--DCDPDVIT 327

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+       + +R  + ++ +H                                +M 
Sbjct: 328 YNALINCFC---KFERMPKAFEFLH--------------------------------EMK 352

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
             G+ P+ V  S  ID     G ++ A +   + +   ++    +Y+SL+ A   A N  
Sbjct: 353 ANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLA 412

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +AL+L E +    +K  V T  AL+  LC+  ++ +  EV   M + G+ PN  TY+ L+
Sbjct: 413 EALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALV 472

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTL 421
               +  ++E    +L + KE  + P+L+++  I+ G+C+  R E+A+ L
Sbjct: 473 HGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLL 522



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 116/267 (43%), Gaps = 15/267 (5%)

Query: 46  DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST----FNMLMSV 101
           D+L++M+ K +     +Y    + +C   + ++EA      +    ++T    +  LM  
Sbjct: 486 DILKEMKEKCIKPDLLLYGTILWGLCNESR-LEEAKLLIGEIKESGINTNAVIYTTLMDA 544

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMFE-------NVKPD 153
              S  +  A  +L  + + GL A    Y  LI    KSG V +AM          ++P+
Sbjct: 545 YFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPN 604

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
             V+ AL+    ++   + A  +  EM  +   + PD I   AL+      G +  A  +
Sbjct: 605 VAVYTALVDGLCKNNCFEVAKKLFDEMLDK--GMMPDKIAYTALIDGNMKHGNLQEALNL 662

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
              + +  ++     YT  I   S +G  + A ++ D+M  KGV+PDEV    LI     
Sbjct: 663 RDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYA 722

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYS 300
            GKV+ A E+  E   +G+  G+  ++
Sbjct: 723 LGKVDEALELQNEMAKRGMITGLSDHA 749


>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 426

 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 154/346 (44%), Gaps = 9/346 (2%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           F+++C+   A     +  K+   P   T   L+     + + + A      V   G + D
Sbjct: 20  FYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKKALHFHDDVIAKGFRLD 79

Query: 127 CKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
              Y TLI    KSG+  A      PD+ +++ +I    +   V  A+D+  EM   V  
Sbjct: 80  NVSYGTLINGLCKSGETKA------PDQFMYSMIINRLCKDKLVVDAYDLYCEM--VVKR 131

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + PD +T   L+      GQ++ A  ++  +   NI      + I I+   + GD +   
Sbjct: 132 IFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGK 191

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           SV   M K+ V PD V  S+LID      K   A  I       G+++ + SY+ ++   
Sbjct: 192 SVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGL 251

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
           S AK   +A+ L++ M+   + P   T + LI  L    ++    +++ +M++ G   N 
Sbjct: 252 SKAKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRATGRSANV 311

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           ITYS LL    +    +  + + ++ K+ G  PN+V +  ++ G+C
Sbjct: 312 ITYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDGLC 357



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 36/289 (12%)

Query: 126 DCKLYTTLITTCAKSGKV-DAM-------FENVKPDRVVFNALITACGQSGAVDRAFDVL 177
           D   Y TLI      G++ DA+        +N+ P+   FN LI    + G V     VL
Sbjct: 135 DVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSVL 194

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
           A M  +   V PD +T  +L+       + ++AR ++  + +  +      Y I IN  S
Sbjct: 195 AVMIKQ--SVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGLS 252

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           +    + A  ++ +M  K + PD +  S LID  G  G++   ++++ E +  G S  +I
Sbjct: 253 KAKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRATGRSANVI 312

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +YSSL+     + ++  A+ ++  +K    +P + T N L+  LC   +L    E+  D+
Sbjct: 313 TYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQEIFHDL 372

Query: 358 --------------------------KSLGLCPNTITYSILLVACERKD 380
                                     ++ G  PN +TY I++ A  + D
Sbjct: 373 LIKGYRLDVRLYTVMINGLCREALFDEAYGCTPNAVTYEIIIRALFKND 421



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 70/327 (21%), Positives = 134/327 (40%), Gaps = 40/327 (12%)

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           +I IN         +A SV   + K G  PD V L+ L+       +V+ A     +   
Sbjct: 14  SILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKKALHFHDDVIA 73

Query: 290 QGISVGIISYSSLM-GACSNAKNWQ--------------------KALELYEHMKSIKLK 328
           +G  +  +SY +L+ G C + +                        A +LY  M   ++ 
Sbjct: 74  KGFRLDNVSYGTLINGLCKSGETKAPDQFMYSMIINRLCKDKLVVDAYDLYCEMVVKRIF 133

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P V T N LI   C   QL   + + ++M+   + PN  +++IL+    ++ DV+ G  +
Sbjct: 134 PDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSV 193

Query: 389 LSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL------NEHVLSFNSGRPQIEN--- 437
           L+   +  V P++V    +I      ++  KAR +      N   +   S    I     
Sbjct: 194 LAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYNIMINGLSK 253

Query: 438 -KWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADAL 492
            K    A+++++E       P     S ++  L    ++ Y  D+ + +    G SA+ +
Sbjct: 254 AKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEM-RATGRSANVI 312

Query: 493 KRSNLCSLIDGFGEYDP--RAFSLLEE 517
             S+L +++   G +D   R F+ +++
Sbjct: 313 TYSSLLNVLCKSGHFDTAIRIFTKIKD 339



 Score = 39.3 bits (90), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 79/183 (43%), Gaps = 24/183 (13%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK 310
           M  +G+  D + LS LI+   H  ++  AF +L +    G     ++ ++L+ G C N +
Sbjct: 1   MELRGIQRDIINLSILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNE 60

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDG------DQLPKTM------------- 351
             +KAL  ++ + +   +    +   LI  LC        DQ   +M             
Sbjct: 61  -VKKALHFHDDVIAKGFRLDNVSYGTLINGLCKSGETKAPDQFMYSMIINRLCKDKLVVD 119

Query: 352 --EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
             ++  +M    + P+ +TY+ L+        +E  + L ++ +   ++PN+  F  +I 
Sbjct: 120 AYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKNIVPNVCSFNILID 179

Query: 409 GMC 411
           G+C
Sbjct: 180 GLC 182


>gi|26452823|dbj|BAC43491.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 702

 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 177/388 (45%), Gaps = 34/388 (8%)

Query: 139 KSGKV-DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           KS K+ D M E  +KPD   F  +I+   Q+G   RA +   +M++     +PD++T+ A
Sbjct: 193 KSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSS--FGCEPDNVTMAA 250

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ A   AG VD A  +Y        +     ++  I     +G+++   ++Y++M   G
Sbjct: 251 MIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALG 310

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V P+ V  + LID  G A +   A  I ++    G +    +Y++L+ A   A+    AL
Sbjct: 311 VKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDAL 370

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLV- 374
            +Y  MK   L  TV   N L++   D   + +  E+  DMK+   C P++ T+S L+  
Sbjct: 371 AIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITV 430

Query: 375 -ACE-RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
            AC  R  + E  L+   Q +E G  P L +   +I  C   Y KA+ +++ V +F+   
Sbjct: 431 YACSGRVSEAEAALL---QMREAGFEPTLFVLTSVI-QC---YGKAKQVDDVVRTFD--- 480

Query: 433 PQIENKWTSLALMVYREAIVAGTIPTV------EVVSKVLGCLQ--LPYNADIRERLVEN 484
            Q+      L L +  +    G +  V      E + K++GC++   P    + + LVE 
Sbjct: 481 -QV------LELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEE 533

Query: 485 LGVSADALKRSNLCSLIDGFGEYDPRAF 512
                   K+     LID  G    +A+
Sbjct: 534 QNCEEGVFKK-EASELIDSIGSDVKKAY 560



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 151/335 (45%), Gaps = 11/335 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVD 144
           P+  +  +N+ M V   SKD E + ++   + E G+K D   +TT+I+   ++G   +  
Sbjct: 171 PSREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAV 230

Query: 145 AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             FE +     +PD V   A+I A G++G VD A  +      E   +D   +T   L++
Sbjct: 231 EWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDA--VTFSTLIR 288

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               +G  D    +Y+ +    +K    +Y   I+   +      A  +Y D+   G  P
Sbjct: 289 IYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTP 348

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    +AL+   G A   + A  I +E K +G+S+ +I Y++L+  C++     +A E++
Sbjct: 349 NWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIF 408

Query: 320 EHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           + MK+ +   P   T ++LIT      ++ +    L  M+  G  P     + ++    +
Sbjct: 409 QDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGK 468

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
              V+  +    Q  E G+ P+     C++ + ++
Sbjct: 469 AKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQ 503



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 83/371 (22%), Positives = 144/371 (38%), Gaps = 69/371 (18%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +++ LIR     G    C+++ E+M+  G+     +Y+    ++ ++++  +    +  L
Sbjct: 282 TFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDL 341

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + N   P  ST+  L+     ++  + A  + R ++E GL     LY TL++ CA  G V
Sbjct: 342 ITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADIGYV 401

Query: 144 DAMF---------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           D  F         E   PD   F++LIT    SG V  A   L +M       +P    +
Sbjct: 402 DEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREA--GFEPTLFVL 459

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE----FACS--- 247
            ++++    A QVD     +  + +  I          +N  +QT   E      C    
Sbjct: 460 TSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKA 519

Query: 248 -----------VYDDMTKKGVIPDE--------------VFLSALIDFAGHAGKVEAAFE 282
                      V +   ++GV   E               +L+ LID   +  K+E A E
Sbjct: 520 KPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLIDLCVNLNKLERACE 579

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT--- 339
           ILQ      I  G+ S S        A  W        H+KS+ L   ++ ++  +    
Sbjct: 580 ILQLGLEYDIYTGLQSKS--------ATQWSL------HLKSLSLGAALTALHVWMNDLS 625

Query: 340 --ALCDGDQLP 348
             AL  G++ P
Sbjct: 626 EAALESGEEFP 636


>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic-like [Brachypodium distachyon]
          Length = 904

 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 170/383 (44%), Gaps = 13/383 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKSQKAIKEAF-RFFKLVPNPTLS 93
           + G +    +L+ +ME  G+      YH+    + + + +K     F R  +    P++ 
Sbjct: 386 QSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSII 445

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDAMFEN- 149
           ++  L+++         A  + + ++  G+K + K Y+ LI+            ++FE  
Sbjct: 446 SYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEM 505

Query: 150 ----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               ++PDR ++N LI A  + G +DRA  +L +M  E   + P +     +++  A AG
Sbjct: 506 LKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKE--RMQPSNRAFRPIIEGFAVAG 563

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            + RA  +  ++ +     T   Y   I+   +    E A SV + M+  G+ P+E   +
Sbjct: 564 DMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYT 623

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            ++      G +  AFE   + K  G+ + +  Y +L+ AC  +   Q AL +   M + 
Sbjct: 624 IIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQ 683

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           K+       N LI        + +  +++  MK  G+ PN  TY+  + AC +  D++  
Sbjct: 684 KIARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 743

Query: 386 LMLLSQAKEDGVIPNLVMFKCII 408
             ++ +  + G+ PNL  +  +I
Sbjct: 744 QKVIEEMADVGLKPNLKTYTTLI 766



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 161/354 (45%), Gaps = 13/354 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRFFKLVPN 89
           N  I+ G++++ I + ++ME  G+   +K Y    + F ++     A        K    
Sbjct: 452 NLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQ 511

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------- 142
           P  + +N+L+       + + A ++L  +Q+  ++   + +  +I   A +G        
Sbjct: 512 PDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNI 571

Query: 143 VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +D M  +   P  + +NALI    +   V+RA  VL +M+  +  + P+  T   +M+  
Sbjct: 572 LDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMS--IAGITPNEHTYTIIMRGY 629

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A  G + +A E +  I +  +K    +Y   +  C ++G  + A +V  +M+ + +  + 
Sbjct: 630 AANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNT 689

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LID     G V  A +++++ K  G+   I +Y+S + AC  A + Q+A ++ E 
Sbjct: 690 FVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEE 749

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           M  + LKP + T   LI          + ++   +MK  GL P+   Y  L+ +
Sbjct: 750 MADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAYHCLVTS 803



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/365 (22%), Positives = 163/365 (44%), Gaps = 41/365 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAM 146
           P    F  L+   A ++D  G    +  ++  G++     Y+ +I   AK   +   D +
Sbjct: 302 PNAFVFTSLVHAYAVARDMRGVLSCVEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNL 361

Query: 147 FENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAE--VHPVDPDH-------- 191
           F+  K      + ++++ +I A  QSG +DRA +++ EM  +    P+D  H        
Sbjct: 362 FKEAKAKLGDLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTI 421

Query: 192 -----------------------ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                                  I+ G L+      G+V +A  + K +  Y IK   + 
Sbjct: 422 IQDEKKCLIVFERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKT 481

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y++ I+      D+  A S++++M K G+ PD    + LI+     G ++ A  IL++ +
Sbjct: 482 YSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQ 541

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            + +     ++  ++   + A + ++AL + + M+     PTV T NALI  L   +Q+ 
Sbjct: 542 KERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVE 601

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + + VL+ M   G+ PN  TY+I++       D+       ++ KE G+  ++ +++ ++
Sbjct: 602 RAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLL 661

Query: 409 GMCSR 413
             C +
Sbjct: 662 RACCK 666



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 134/330 (40%), Gaps = 10/330 (3%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
           +  ++ +M      +D +    V   ++E         Y  LI    K GKV        
Sbjct: 409 IDAYHSMMHGYTIIQDEKKCLIVFERLKECCFTPSIISYGCLINLYIKIGKVTKAIAISK 468

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 +K +   ++ LI+          AF +  EM      + PD      L++A   
Sbjct: 469 EMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKS--GLQPDRAIYNLLIEAFCK 526

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G +DRA  + + + K  ++ +   +   I   +  GD + A ++ D M + G  P  + 
Sbjct: 527 MGNMDRAIRILEKMQKERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMT 586

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +ALI       +VE A  +L +    GI+    +Y+ +M   +   +  KA E +  +K
Sbjct: 587 YNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIK 646

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              LK  V     L+ A C   ++   + V  +M +  +  NT  Y+IL+    R+ DV 
Sbjct: 647 EGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVW 706

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
               L+ Q KEDGV PN+  +   I  C +
Sbjct: 707 EAADLMKQMKEDGVPPNIHTYTSYINACCK 736



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 137/313 (43%), Gaps = 15/313 (4%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPTLSTFNM 97
            +    + E+M + GL     +Y+      CK     +AI+   +  K    P+   F  
Sbjct: 495 FANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRP 554

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------N 149
           ++   A + D + A  +L L++ +G       Y  LI    K  +V+             
Sbjct: 555 IIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAG 614

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           + P+   +  ++     +G + +AF+   ++      +  D      L++AC  +G++  
Sbjct: 615 ITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKE--GGLKLDVYIYETLLRACCKSGRMQS 672

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALI 268
           A  V + +    I     VY I I+  ++ GD WE A  +   M + GV P+    ++ I
Sbjct: 673 ALAVTREMSTQKIARNTFVYNILIDGWARRGDVWE-AADLMKQMKEDGVPPNIHTYTSYI 731

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +    AG ++ A ++++E  + G+   + +Y++L+   + A    +AL+ +E MK   LK
Sbjct: 732 NACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLK 791

Query: 329 PTVSTMNALITAL 341
           P  +  + L+T+L
Sbjct: 792 PDEAAYHCLVTSL 804



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/333 (18%), Positives = 140/333 (42%), Gaps = 10/333 (3%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F+ +P P+   F +++   A   D   A      ++  G++ +  ++T+L+   A +  +
Sbjct: 261 FERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDM 320

Query: 144 DAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
             +         E ++   V ++ +I    +      A ++  E  A++   D + I   
Sbjct: 321 RGVLSCVEEMKAEGIELTIVTYSIIIAGFAKINDAQSADNLFKEAKAKLG--DLNGIIYS 378

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++ A   +G +DRA E+ + + +  I    + Y   ++  +   D +    V++ + + 
Sbjct: 379 NIIHAHCQSGNMDRAEELVREMEEDGIDAPIDAYHSMMHGYTIIQDEKKCLIVFERLKEC 438

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
              P  +    LI+     GKV  A  I +E ++ GI     +YS L+    +  ++  A
Sbjct: 439 CFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDFANA 498

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             ++E M    L+P  +  N LI A C    + + + +L  M+   + P+   +  ++  
Sbjct: 499 FSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPIIEG 558

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                D++  L +L   +  G  P ++ +  +I
Sbjct: 559 FAVAGDMKRALNILDLMRRSGCAPTVMTYNALI 591


>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 124/265 (46%), Gaps = 3/265 (1%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           E V+P+   +   +    ++  V  A++ L  +    +P +       A++    + GQV
Sbjct: 242 EGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNS--YCFNAVIHGFCHDGQV 299

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
            +A EV+  + K         Y+I ++   + GD      +  +M + G+ P+ V  S+L
Sbjct: 300 HKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSL 359

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           +     AG+VE AFE+ +  K+QG     I YS ++  C    + +   +L+  M     
Sbjct: 360 LHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNF 419

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P     ++LI A C   QL + +EV   M   G+CPN +T +IL+     +  +    +
Sbjct: 420 VPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFL 479

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMC 411
            L + ++ GV+PNL  ++ II G+C
Sbjct: 480 FLDKVRQFGVVPNLCTYRVIINGLC 504



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/381 (19%), Positives = 165/381 (43%), Gaps = 13/381 (3%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           G++ + +++ + M++ G +     Y      +CK    +   +   ++  N   P L ++
Sbjct: 297 GQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSY 356

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMF 147
           + L+     +   E AF++ + +++ G K D  +Y+ ++  C +   +        D + 
Sbjct: 357 SSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVH 416

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
            N  PD   +++LI A  +   +  A +V   M  +   + P+ +T   L+   +N G +
Sbjct: 417 HNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICD--GICPNVVTCTILVHGFSNEGLI 474

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             A      + ++ +      Y + IN   +         ++ DM K+G +PD V  S +
Sbjct: 475 GEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSII 534

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ID    A  ++ AF +  +  ++G    I +Y+SL+    +     + + L++HM    L
Sbjct: 535 IDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGL 594

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P      +LI   C    +   +E+  +M++ GL  ++  Y+ L+    +   ++   +
Sbjct: 595 TPDRILYTSLIACYCKRSNMKAALEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQL 654

Query: 388 LLSQAKEDGVIPNLVMFKCII 408
            + +    G+ P +V +  +I
Sbjct: 655 FMEEMMNKGLTPTVVTYTDLI 675



 Score =  102 bits (254), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 157/347 (45%), Gaps = 12/347 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P  +T+   +     +K  + A+  L+++ + G   +   +  +I      G+V     +
Sbjct: 246 PNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEV 305

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F+ +K     PD   ++ L+    + G V   + +L EM    + + P+ ++  +L+   
Sbjct: 306 FDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMAR--NGITPNLVSYSSLLHGL 363

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AG+V+ A E++K +     K    VY+I ++ C Q  D E    +++DM     +PD 
Sbjct: 364 CRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDA 423

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              S+LI       +++ A E+ +     GI   +++ + L+   SN     +A    + 
Sbjct: 424 YNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDK 483

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           ++   + P + T   +I  LC  ++      + +DM   G  P+T+ YSI++    +  D
Sbjct: 484 VRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVKALD 543

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
           ++    L  +  ++G  PN+  +  +I G+C   +  +  TL +H++
Sbjct: 544 LQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMI 590



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 8/225 (3%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQTGD----WEFACSVYDD 251
           L+K      Q+   R ++       I G +P +Y+ ++     T       E A  +  +
Sbjct: 182 LLKGLVEGNQIMYVRSLFD---DMKISGPSPNIYSYSVLMSMYTHGAKLCLEEAQELLSE 238

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M  +GV P+       +     A +V++A+  LQ    +G       +++++    +   
Sbjct: 239 MEVEGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQ 298

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             KA+E+++ MK     P V + + L+  LC    +     +L +M   G+ PN ++YS 
Sbjct: 299 VHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSS 358

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
           LL    R   VE+   L  + K+ G   + +++  ++  C +  +
Sbjct: 359 LLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLD 403



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 15/164 (9%)

Query: 263 FLSALIDFAGHAGKVEAAFEILQEA----KNQGISVGIIS-YSSLMGACSNAKNWQKALE 317
            + +++D  G+AG      E+ Q A     N G S+ +   Y++++        ++ AL 
Sbjct: 110 LIQSVVDHCGNAGP-----ELFQLAPMLASNLGGSMTLPQVYATVIRVFVELSMFEDALV 164

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
            Y   K + ++  V   N L+  L +G+Q+     +  DMK  G  PN  +YS+L+    
Sbjct: 165 TYVEAKKVGVELQVC--NFLLKGLVEGNQIMYVRSLFDDMKISGPSPNIYSYSVLMSMYT 222

Query: 378 R--KDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMCSRRYEKA 418
              K  +E    LLS+ + +GV PN   +   + G+C  +  K+
Sbjct: 223 HGAKLCLEEAQELLSEMEVEGVRPNAATYGTYLYGLCRAKQVKS 266


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 158/356 (44%), Gaps = 20/356 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--------AIKEAFRFF 84
           N L + G+++   D++EDM+  G+      Y+      CK  +        AI +     
Sbjct: 163 NGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAK 222

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
            + PN    T+N+L+      ++  GA +V   +Q  GL+ +   Y  LI      GKVD
Sbjct: 223 GICPNEV--TYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVD 280

Query: 145 A--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                    +  +++P+ V  N LI    ++  V+ A ++  +M  E   VDP+ +T   
Sbjct: 281 EAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDM--EKQGVDPNAMTYTT 338

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ A    G+++ A  +Y M+    I      Y   I    + GD + A S+ ++M  K 
Sbjct: 339 LIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKK 398

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           +  D V  + LID     G+   A ++L E   +G++   ++Y++LM       N + AL
Sbjct: 399 LSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAAL 458

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            +   M+    +  V T N LI   C   +L     +L++M   GL PN  TY I+
Sbjct: 459 IVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEII 514



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 172/380 (45%), Gaps = 21/380 (5%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           +FN++++          A  V+  ++  G+  +   Y TLI    K G++  M++     
Sbjct: 157 SFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAIL 216

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  + P+ V +N LI    +   V  A  V  EM  +   + P+ +T   L+    
Sbjct: 217 KEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQ--GLRPNVVTYNILINGLC 274

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           + G+VD A  +   +   +++     + + IN   +      A ++++DM K+GV P+ +
Sbjct: 275 SDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAM 334

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + LID     G++E AF +     ++GI   + +Y+ L+       + + A  L   M
Sbjct: 335 TYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEM 394

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            S KL   V T N LI +LC   +  K +++L +M   GL P+ +TY+ L+    R+ ++
Sbjct: 395 VSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNL 454

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWT 440
              L++ ++ +  G   N+V    +I G C + R E A  L   +L     R  + N+ T
Sbjct: 455 RAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLE----RGLVPNRTT 510

Query: 441 SLALMVYREAIVAGTIPTVE 460
               ++  E +  G +P +E
Sbjct: 511 --YEIIKEEMMEKGFVPDIE 528



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 129/276 (46%), Gaps = 38/276 (13%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           + FN ++    + G ++RA DV+ +M  +V  V P+ IT   L+      G++ +   +Y
Sbjct: 156 ISFNIVVNGLCKVGKLNRAGDVIEDM--KVWGVSPNVITYNTLIDGYCKMGRIGK---MY 210

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           K                             A ++  +M  KG+ P+EV  + LID     
Sbjct: 211 K-----------------------------ADAILKEMVAKGICPNEVTYNILIDGFCKD 241

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVST 333
             V  A  +  E + QG+   +++Y+ L+ G CS+ K   +A+ L + M S  L+P V T
Sbjct: 242 ENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGK-VDEAVALRDQMVSSDLEPNVVT 300

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            N LI   C    + + + + +DM+  G+ PN +TY+ L+ A  +   +E    L +   
Sbjct: 301 HNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMI 360

Query: 394 EDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLS 427
           + G+ P +  + C+I G+C +   + AR+L   ++S
Sbjct: 361 DRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVS 396



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 122/268 (45%), Gaps = 8/268 (2%)

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-- 270
           VY+ + K  I+     + I +N   + G    A  V +DM   GV P+ +  + LID   
Sbjct: 142 VYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYC 201

Query: 271 -AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
             G  GK+  A  IL+E   +GI    ++Y+ L+      +N   A+ ++  M+   L+P
Sbjct: 202 KMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRP 261

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            V T N LI  LC   ++ + + +   M S  L PN +T+++L+    +   V   + L 
Sbjct: 262 NVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLF 321

Query: 390 SQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG-RPQIENKWTSLALMV 446
           +  ++ GV PN + +  +I    +  R E A  L  + +  + G  P++      +A + 
Sbjct: 322 NDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFAL--YNMMIDRGIFPEVSTYNCLIAGLC 379

Query: 447 YREAIVAGTIPTVEVVSKVLGCLQLPYN 474
            +  + A      E+VSK L    + YN
Sbjct: 380 RKGDVKAARSLMNEMVSKKLSADVVTYN 407



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 12/202 (5%)

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           S+ GD EF   VY +M K+ +  + +  + +++     GK+  A +++++ K  G+S  +
Sbjct: 134 SENGDMEF---VYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNV 190

Query: 297 ISYSSLM-GACSNAK--NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
           I+Y++L+ G C   +     KA  + + M +  + P   T N LI   C  + +   M V
Sbjct: 191 ITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRV 250

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
             +M+  GL PN +TY+IL+        V+  + L  Q     + PN+V    +I G C 
Sbjct: 251 FGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFC- 309

Query: 413 RRYEKARTLNEHVLSFNSGRPQ 434
               K +T+NE +  FN    Q
Sbjct: 310 ----KNKTVNEAINLFNDMEKQ 327



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 12/144 (8%)

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           K+   FE  + A + G  + +IS + L+ G    ++N      +Y  M   K++  V + 
Sbjct: 100 KILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEF-VYREMIKRKIELNVISF 158

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLM-----L 388
           N ++  LC   +L +  +V+ DMK  G+ PN ITY+ L+   C+      +G M     +
Sbjct: 159 NIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMG---RIGKMYKADAI 215

Query: 389 LSQAKEDGVIPNLVMFKCII-GMC 411
           L +    G+ PN V +  +I G C
Sbjct: 216 LKEMVAKGICPNEVTYNILIDGFC 239


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 153/332 (46%), Gaps = 11/332 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + T+N+++    S    E AF+V+  + + G K     YT LI      G+++   E
Sbjct: 163 SPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALE 222

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    ++PD   +NA+I    + G  DRA D +  ++A     +PD ++   L+++
Sbjct: 223 LFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSA--RGCNPDVVSYNILLRS 280

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             N  + +    + K +     +     ++I I+   + G    A +V + M +KG+ PD
Sbjct: 281 FLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPD 340

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
                 LI      G+++ A E L++  + G    I++Y++++           AL+++E
Sbjct: 341 SYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILATLCKFGCADLALDVFE 400

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            +  +   PTV   N + +AL       K +E++S+M   G+ P+ ITY+ L+    R  
Sbjct: 401 KLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDG 460

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCI-IGMC 411
            V+  + LL   +     P ++ F  + +GMC
Sbjct: 461 LVDEAIGLLVDMEATRFQPTVISFNIVLLGMC 492



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 159/360 (44%), Gaps = 13/360 (3%)

Query: 60  DKVYHARFFNVCKSQKAIKEA-FR--FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR 116
           D +   RF N    +     A FR   F  + N       +L   C + K +E  +  L 
Sbjct: 28  DSIPACRFSNKTHLRNVTSSAEFRQPHFPNLDNRDAHLMKLLNRSCRAGKHNESLY-FLE 86

Query: 117 LVQEAGLKADCKLYTTLIT------TCAKSGKVDAMFENV-KPDRVVFNALITACGQSGA 169
            V   G K D  L T LI          K+ +V  + E    PD   +NA+I+   ++  
Sbjct: 87  SVVSKGFKPDVVLCTKLIKGFFNSRNLKKAMRVMEILETYGDPDVYSYNAMISGFSKANQ 146

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D A  V   M +      PD +T   ++ +  + G+++ A EV   + K   K +   Y
Sbjct: 147 IDSANQVFDRMRS--RGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITY 204

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           TI I      G    A  ++D++  +G+ PD    +A+I      G  + A + ++    
Sbjct: 205 TILIEATILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSA 264

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           +G +  ++SY+ L+ +  N   W+    L + M     +P V T + LI++ C   ++ +
Sbjct: 265 RGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVRE 324

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            + VL  MK  GL P++ +Y  L+ A  ++  +++ +  L +   DG +P++V +  I+ 
Sbjct: 325 AVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTILA 384



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 5/227 (2%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFAC 246
           PD +    L+K   N+  + +A  V +++  Y   G P+VY+    I+  S+    + A 
Sbjct: 95  PDVVLCTKLIKGFFNSRNLKKAMRVMEILETY---GDPDVYSYNAMISGFSKANQIDSAN 151

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            V+D M  +G  PD V  + +I      GK+E AFE++ E    G    +I+Y+ L+ A 
Sbjct: 152 QVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEAT 211

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
                  +ALEL++ + S  L+P + T NA+I  +C      + ++ +  + + G  P+ 
Sbjct: 212 ILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDV 271

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           ++Y+ILL +   K   E G  L+      G  PN+V    +I    R
Sbjct: 272 VSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCR 318



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/350 (20%), Positives = 152/350 (43%), Gaps = 50/350 (14%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPT 91
           I +GRI+E ++L +++  +GL      Y+A    +CK +     A  F + +     NP 
Sbjct: 212 ILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICK-EGMEDRALDFVRHLSARGCNPD 270

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------D 144
           + ++N+L+    +    E   ++++ +  +G + +   ++ LI++  + G+V       +
Sbjct: 271 VVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLE 330

Query: 145 AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            M E  + PD   ++ LI+A  + G +D A + L +M ++     PD +    ++     
Sbjct: 331 VMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSD--GCLPDIVNYNTILATLCK 388

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G  D A +V++ + +     T   Y    +     G+   A  +  +M +KG+ PDE+ 
Sbjct: 389 FGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKALEMISEMIRKGIDPDEIT 448

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            ++LI      G V+ A  +L +                                   M+
Sbjct: 449 YNSLISCLCRDGLVDEAIGLLVD-----------------------------------ME 473

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           + + +PTV + N ++  +C   ++ + +E+L  M   G  PN  +Y +L+
Sbjct: 474 ATRFQPTVISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSYVLLI 523


>gi|302775192|ref|XP_002971013.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
 gi|300160995|gb|EFJ27611.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
          Length = 413

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 125/277 (45%), Gaps = 8/277 (2%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE--VHPVDPDHITIGALMKACANAGQ 206
           ++KPD  ++N ++ A G+   ++R       M  E  V  V     T   L+       Q
Sbjct: 93  SLKPDVAMYNTMLAAYGRGHKLERVLQTWERMQKEGCVENVG----TYCLLVSTFVQTNQ 148

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            D A + Y  ++   +K T  +Y   +  C+  G W  A + + +M + G  P  V  + 
Sbjct: 149 ADLALDAYARMNSQGLKATDGIYRGLVCVCATQGRWLVALTFFKEMLESGCKPTIVTYNV 208

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           L+   G AGK E   ++L   K  G++    + ++++     A+ + +A+  +  +KS  
Sbjct: 209 LMRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLNGLIAAREFDRAMLFFHSVKSSG 268

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           +K      N ++ A          + ++ +M+  G+ PN +T+  LLVACE    VEV L
Sbjct: 269 MKLDREVYNVILVACQKSKNWEAALSLVQEMEQTGIAPNEVTFGPLLVACENAKQVEVAL 328

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTL 421
            L    K+   +PN  +   +I  C +   +++AR +
Sbjct: 329 RLYEHMKQRRCVPNTHVVASLIRACGKELMWQQARNI 365



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 125/285 (43%), Gaps = 15/285 (5%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VD 144
           + T+ +L+S    +  ++ A      +   GLKA   +Y  L+  CA  G+         
Sbjct: 133 VGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQGRWLVALTFFK 192

Query: 145 AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            M E+  KP  V +N L+ A G++G  +   D+L  M A    V PD  T+ A++     
Sbjct: 193 EMLESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMKAS--GVAPDFYTVNAVLNGLIA 250

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           A + DRA   +  +    +K   EVY + +  C ++ +WE A S+  +M + G+ P+EV 
Sbjct: 251 AREFDRAMLFFHSVKSSGMKLDREVYNVILVACQKSKNWEAALSLVQEMEQTGIAPNEVT 310

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
              L+    +A +VE A  + +  K +         +SL+ AC     WQ+A  +Y    
Sbjct: 311 FGPLLVACENAKQVEVALRLYEHMKQRRCVPNTHVVASLIRACGKELMWQQARNIYR--- 367

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                P V   NALI A C   +     +V   M   G   N +T
Sbjct: 368 --VSSPNVYVYNALIDAYCRSQKYHLAKKVDRRMIEEGCQRNNVT 410



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 24/239 (10%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMS 100
           +D    M  +GL   D +Y      VC +Q     A  FFK +      PT+ T+N+LM 
Sbjct: 153 LDAYARMNSQGLKATDGIYRG-LVCVCATQGRWLVALTFFKEMLESGCKPTIVTYNVLMR 211

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-AM--FENVKP----- 152
               +   E    +L  ++ +G+  D      ++     + + D AM  F +VK      
Sbjct: 212 ALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLNGLIAAREFDRAMLFFHSVKSSGMKL 271

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           DR V+N ++ AC +S   + A  ++ EM  E   + P+ +T G L+ AC NA QV+ A  
Sbjct: 272 DREVYNVILVACQKSKNWEAALSLVQEM--EQTGIAPNEVTFGPLLVACENAKQVEVALR 329

Query: 213 VYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           +Y+  H    +  P  + +A  I  C +   W+ A ++Y   +     P+    +ALID
Sbjct: 330 LYE--HMKQRRCVPNTHVVASLIRACGKELMWQQARNIYRVSS-----PNVYVYNALID 381



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 65/333 (19%), Positives = 125/333 (37%), Gaps = 75/333 (22%)

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
           ++G    AF VL  ++     +  +     +L+      G    A  +++ +    +  T
Sbjct: 4   RAGRRRTAFKVLEWLSDRKRGIHAN--AYNSLITGLMKDGDEADAIAIFERMKHDRVAPT 61

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEIL 284
              YT  +   S    WE A  ++ ++   G + PD    + ++   G   K+E   +  
Sbjct: 62  LYTYTAVMRALSHVQGWESAHRMFSELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTW 121

Query: 285 QEAKNQGI--SVG----IIS-----------------------------YSSLMGACSNA 309
           +  + +G   +VG    ++S                             Y  L+  C+  
Sbjct: 122 ERMQKEGCVENVGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQ 181

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT- 368
             W  AL  ++ M     KPT+ T N L+ AL    +    +++L  MK+ G+ P+  T 
Sbjct: 182 GRWLVALTFFKEMLESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTV 241

Query: 369 ----------------------------------YSILLVACERKDDVEVGLMLLSQAKE 394
                                             Y+++LVAC++  + E  L L+ + ++
Sbjct: 242 NAVLNGLIAAREFDRAMLFFHSVKSSGMKLDREVYNVILVACQKSKNWEAALSLVQEMEQ 301

Query: 395 DGVIPNLVMFKCIIGMC--SRRYEKARTLNEHV 425
            G+ PN V F  ++  C  +++ E A  L EH+
Sbjct: 302 TGIAPNEVTFGPLLVACENAKQVEVALRLYEHM 334



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 91/210 (43%), Gaps = 16/210 (7%)

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           AG+   AF++L+   ++   +   +Y+SL+       +   A+ ++E MK  ++ PT+ T
Sbjct: 5   AGRRRTAFKVLEWLSDRKRGIHANAYNSLITGLMKDGDEADAIAIFERMKHDRVAPTLYT 64

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQA 392
             A++ AL           + S++   G L P+   Y+ +L A  R   +E  L    + 
Sbjct: 65  YTAVMRALSHVQGWESAHRMFSELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTWERM 124

Query: 393 KEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL---------- 442
           +++G + N+  +  ++    +  +    L+ +    + G    +  +  L          
Sbjct: 125 QKEGCVENVGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQGRW 184

Query: 443 --ALMVYREAIVAGTIPTV---EVVSKVLG 467
             AL  ++E + +G  PT+    V+ + LG
Sbjct: 185 LVALTFFKEMLESGCKPTIVTYNVLMRALG 214


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 179/395 (45%), Gaps = 52/395 (13%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFN 96
           + + +++L  M + G++     Y++     C S++  KEA  F K + +    P + T+N
Sbjct: 247 MDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQP-KEAIGFLKKMRSDGVEPDVVTYN 305

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAMFEN 149
            LM     +  S  A ++   + + GL+ D   Y TL+   A  G +       D M  N
Sbjct: 306 SLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRN 365

Query: 150 -VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            + PD  VFN LI A  +   VD A  V ++M    H ++P+ +T GA++     +G VD
Sbjct: 366 GIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQ--HGLNPNVVTYGAVIGILCKSGSVD 423

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A     M++                              ++ M  +G+ P+ +  ++LI
Sbjct: 424 DA-----MLY------------------------------FEQMIDEGLTPNIIVYTSLI 448

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                  K + A E++ E  ++GI +  I ++S++ +        ++ +L++ M  I +K
Sbjct: 449 HSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVK 508

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P V T + LI   C   ++ +  ++LS M S+G+ P+ +TY+ L+    R   ++  L L
Sbjct: 509 PNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALAL 568

Query: 389 LSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 421
             +    GV PN++ +  I+     +RR   A+ L
Sbjct: 569 FKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKEL 603



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 103/476 (21%), Positives = 207/476 (43%), Gaps = 86/476 (18%)

Query: 130 YTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y  LI  C ++G++D  F        +  + + + F  L+           A D++    
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQ 238
            E+  + PD  +   L+K   +  +   A E+  M+      G+ P+V  YT  IN   +
Sbjct: 150 TELSCM-PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFK 208

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            GD + A S Y +M  + + PD V  S++I        ++ A E+L      G+    ++
Sbjct: 209 EGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMT 268

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y+S++    +++  ++A+   + M+S  ++P V T N+L+  LC   +  +  ++   M 
Sbjct: 269 YNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMT 328

Query: 359 SLGLCPNTITY-----------------------------------SILLVACERKDDVE 383
             GL P+  TY                                   +IL+ A  +++ V+
Sbjct: 329 KRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVD 388

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLA 443
             +++ S+ ++ G+ PN+V +  +IG+      K+ ++++ +L F     Q+ ++  +  
Sbjct: 389 EAMLVFSKMRQHGLNPNVVTYGAVIGILC----KSGSVDDAMLYFE----QMIDEGLTPN 440

Query: 444 LMVYREAIVAGTI-----PTVEVVSKVLG---CLQ-LPYNADIRE-----RLVEN----- 484
           ++VY   I +  I        E++ ++L    CL  + +N+ I       R++E+     
Sbjct: 441 IIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFD 500

Query: 485 ----LGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP-CVSFKEI 532
               +GV  + +  S   +LIDG+   G+ D  A  LL    S G+ P CV++  +
Sbjct: 501 LMVRIGVKPNVITYS---TLIDGYCLAGKMD-EATKLLSSMFSVGMKPDCVTYNTL 552



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 164/392 (41%), Gaps = 52/392 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    + GR +E   + + M ++GL + D   +        ++ A+ E      L
Sbjct: 303 TYNSLMDYLCKNGRSTEARKIFDSMTKRGL-EPDIATYCTLLQGYATKGALVEMHALLDL 361

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     +P    FN+L+   A  +  + A  V   +++ GL  +   Y  +I    KSG 
Sbjct: 362 MVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGS 421

Query: 143 VD-AMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM------------NA 182
           VD AM        E + P+ +V+ +LI +       D+A +++ EM            N+
Sbjct: 422 VDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNS 481

Query: 183 EVHP---------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
            +H                      V P+ IT   L+     AG++D A ++   +    
Sbjct: 482 IIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVG 541

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           +K     Y   IN   +    + A +++ +M   GV P+ +  + ++    H  +  AA 
Sbjct: 542 MKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 601

Query: 282 EILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
           E+       G  + + +Y+ ++ G C N     +AL +++++    L+    T N +I A
Sbjct: 602 ELYVGITKSGTQLELSTYNIILHGLCKNNLT-DEALRMFQNLCLTDLQLETRTFNIMIGA 660

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           L    +  +  ++ + + + GL P+  TYS++
Sbjct: 661 LLKVGRNDEAKDLFAALSANGLVPDVRTYSLM 692


>gi|356512664|ref|XP_003525037.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74750-like [Glycine max]
          Length = 873

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 135/310 (43%), Gaps = 47/310 (15%)

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALI 161
           G F  LR  ++ G + D   YTT++    ++ + D++         +  +P+ V +N LI
Sbjct: 362 GFFDWLR--RQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLI 419

Query: 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
              G +  +  A +V  EM  EV   +PD +T   L+   A AG +D A  +YK + +  
Sbjct: 420 HCYGCANYLKEALNVFNEMQ-EV-GCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAG 477

Query: 222 IKGTPEVYTIAINCCSQTG-----------------------------------DWEFAC 246
           +      Y++ INC  + G                                   ++E A 
Sbjct: 478 LSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMAL 537

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +Y DM   G  PD+V  S +++  GH G +E A  +  E + +        Y  L+   
Sbjct: 538 KLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLW 597

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
             A N +KA E Y+ M +  L P V T N+L++A     +LP    ++  M +LGL P+ 
Sbjct: 598 GKAGNVEKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSL 657

Query: 367 ITYSILLVAC 376
            TY++LL  C
Sbjct: 658 QTYTLLLSCC 667



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 123/281 (43%), Gaps = 19/281 (6%)

Query: 205 GQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           G+  R   + K++ +    G  P V  Y   I+C       + A +V+++M + G  PD 
Sbjct: 388 GRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDR 447

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V    LID    AG ++ A  + +  +  G+S    +YS ++     A N   A  L+  
Sbjct: 448 VTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCE 507

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M      P + T N +I            +++  DM++ G  P+ +TYSI++ A      
Sbjct: 508 MVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGY 567

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG-RPQIE-- 436
           +E    +  + ++   +P+  ++  ++ +  +    EKA    + +L  N+G  P +   
Sbjct: 568 LEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAML--NAGLLPNVPTC 625

Query: 437 NKWTSLALMVYR--------EAIVA-GTIPTVEVVSKVLGC 468
           N   S  L ++R        +++VA G  P+++  + +L C
Sbjct: 626 NSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTLLLSC 666



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/227 (21%), Positives = 105/227 (46%), Gaps = 18/227 (7%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           + G I   + + + M+  GL      Y      + K+       + F ++V +   P L 
Sbjct: 459 KAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLV 518

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMF--- 147
           T+N+++++ A +++ E A ++   +Q AG + D   Y+ ++      G   + +++F   
Sbjct: 519 TYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEM 578

Query: 148 --ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANA 204
             +N  PD  V+  L+   G++G V++A +    M NA + P  P   T  +L+ A    
Sbjct: 579 QQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVP---TCNSLLSAFLRL 635

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ---TGDWEFACSV 248
            ++  A  + + +    ++ + + YT+ ++CC++     D  F C +
Sbjct: 636 HRLPDAYNLVQSMVALGLRPSLQTYTLLLSCCTEAQPAHDMGFFCEL 682


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/367 (22%), Positives = 164/367 (44%), Gaps = 21/367 (5%)

Query: 71  CKSQKAIKE-AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           C +Q+  K+ AF+ F+ + N    P   T+  +++ C S  + E   ++   + +AG + 
Sbjct: 102 CYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQR 161

Query: 126 DCKLYTTLITTCAKSG---KVDAMFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMN 181
           D ++  +L++   K G   +   +F  + P D V +N ++    Q   V     +  +M+
Sbjct: 162 DPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMS 221

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
           +E   + PD +T   L+ A      +D  + ++K+  +  +     V T  +  C + GD
Sbjct: 222 SE--GISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGD 279

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            + A   +     + V+     ++AL   A H   VEA FE     ++ G+++   +Y S
Sbjct: 280 VDSAKQAFKGTADRDVVVYNALIAAL---AQHGHNVEA-FEQYYRMRSDGVALNRTTYLS 335

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           ++ ACS +K  +    ++ H+        V   NALI+       LPK  E+   M    
Sbjct: 336 ILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRD 395

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKAR 419
           L    I+++ ++    R++D    + L  Q + +GV P  V F  ++  C  S  Y   +
Sbjct: 396 L----ISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGK 451

Query: 420 TLNEHVL 426
            ++E +L
Sbjct: 452 MIHEDIL 458



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 181/433 (41%), Gaps = 57/433 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVY--HARFFNVCKSQKAIKEAFRFFKLVPNP 90
           N   R G + E  ++ E  + + ++  + +   HA+         + + A++ F+ + N 
Sbjct: 474 NMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQ-------HGSYETAYKLFQEMQNE 526

Query: 91  TLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DA 145
            L     TF  ++S C + +  E   Q+   + E+GL+ D  L   LI    + G + DA
Sbjct: 527 ELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDA 586

Query: 146 --MFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
             +F +++  D + + A+I  C   G   +A ++  +M  E     P   T  +++K C 
Sbjct: 587 RNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNE--GFRPVKSTFSSILKVCT 644

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           ++  +D  ++V   I     +    V    I+  S++G    A  V+D M  +    D V
Sbjct: 645 SSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSR----DIV 700

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + +I      G  + A E   + + Q +     S+ SL+ ACS+    ++   ++  +
Sbjct: 701 SWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEI 760

Query: 323 KSIKLK-------------------------------PTVSTMNALITALCDGDQLPKTM 351
              KL+                                 V T NA+I A        K +
Sbjct: 761 VKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKAL 820

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVIPNLVMFKCIIGM 410
              + M+  G+ P+  T++ +L AC     V  G  + S  + E GV+P +  + C++G+
Sbjct: 821 GFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGL 880

Query: 411 C--SRRYEKARTL 421
              +RR+++A TL
Sbjct: 881 LGRARRFQEAETL 893



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 78/369 (21%), Positives = 162/369 (43%), Gaps = 22/369 (5%)

Query: 54  KGLLDMDKVYHARFFNVCKSQKAIKEAF-RFFKLVPNPTL---STFNMLMSVCASSKDSE 109
           KG  D D V +              EAF +++++  +      +T+  +++ C++SK  E
Sbjct: 288 KGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALE 347

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMFENV-KPDRVVFNALITACG 165
               +   + E G  +D ++   LI+  A+ G   K   +F  + K D + +NA+I    
Sbjct: 348 AGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYA 407

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
           +      A  +  +M +E   V P  +T   L+ ACAN+      + +++ I +  IK  
Sbjct: 408 RREDRGEAMRLYKQMQSE--GVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSN 465

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--GKVEAAFEI 283
             +    +N   + G    A +V++    + VI      +++I  AGHA  G  E A+++
Sbjct: 466 GHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS----WNSMI--AGHAQHGSYETAYKL 519

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
            QE +N+ +    I+++S++  C N +  +   +++  +    L+  V+  NALI     
Sbjct: 520 FQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIR 579

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
              L     V   ++      + ++++ ++  C  + +    + L  Q + +G  P    
Sbjct: 580 CGSLQDARNVFHSLQH----RDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKST 635

Query: 404 FKCIIGMCS 412
           F  I+ +C+
Sbjct: 636 FSSILKVCT 644



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/413 (20%), Positives = 182/413 (44%), Gaps = 56/413 (13%)

Query: 73  SQKA-IKEAFRFFKLVPNPTLST-----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           +QKA +KE    F  + +  +S       N+L +    S   EG  ++ +L  E GL +D
Sbjct: 205 AQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGK-RIHKLTVEEGLNSD 263

Query: 127 CKLYTTLITTCAKSGKVDAMFENVKP----DRVVFNALITACGQSGAVDRAFDVLAEMNA 182
            ++ T L+T C + G VD+  +  K     D VV+NALI A  Q G    AF+    M +
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRS 323

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
           +   V  +  T  +++ AC+ +  ++  + ++  I +       ++    I+  ++ GD 
Sbjct: 324 D--GVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDL 381

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE--AAFEILQEAKNQGISVGIISYS 300
             A  ++  M K+    D +  +A+I  AG+A + +   A  + ++ +++G+  G +++ 
Sbjct: 382 PKARELFYTMPKR----DLISWNAII--AGYARREDRGEAMRLYKQMQSEGVKPGRVTFL 435

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPT------------------------------ 330
            L+ AC+N+  +     ++E +    +K                                
Sbjct: 436 HLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQAR 495

Query: 331 -VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            V + N++I             ++  +M++  L P+ IT++ +L  C+  + +E+G  + 
Sbjct: 496 DVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIH 555

Query: 390 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            +  E G+  ++ +   +I M    Y +  +L +    F+S + +    WT++
Sbjct: 556 GRITESGLQLDVNLGNALINM----YIRCGSLQDARNVFHSLQHRDVMSWTAM 604



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/353 (21%), Positives = 156/353 (44%), Gaps = 23/353 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N  IR G + +  ++   ++ + ++    +        C  Q    +A   F  + N   
Sbjct: 575 NMYIRCGSLQDARNVFHSLQHRDVMSWTAM-----IGGCADQGEDMKAIELFWQMQNEGF 629

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DA-- 145
            P  STF+ ++ VC SS   +   +V+  +  +G + D  +   LI+  +KSG + DA  
Sbjct: 630 RPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDARE 689

Query: 146 MFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           +F+ +   D V +N +I    Q+G    A +   +M  +   V P+  +  +L+ AC++ 
Sbjct: 690 VFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQ--DVVPNKFSFVSLLNACSSF 747

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
             ++  + V+  I K  ++G   V    I+  ++ G    A  V+D++ +K V    V  
Sbjct: 748 SALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNV----VTW 803

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           +A+I+     G    A       + +GI     +++S++ AC++A    +  +++  M+S
Sbjct: 804 NAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMES 863

Query: 325 -IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
              + PT+     L+  L    +  +   +++ M      P+   +  LL AC
Sbjct: 864 EYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMP---FPPDAAVWETLLGAC 913



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 18/196 (9%)

Query: 71  CKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
           C SQ    EA   F  +    + T+N +++  A    +  A      +++ G+K D   +
Sbjct: 782 CGSQG---EAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTF 838

Query: 131 TTLITTCAKSGKVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           T++++ C  +G V   ++          V P    +  L+   G++     A  ++ +M 
Sbjct: 839 TSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQM- 897

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
               P  PD      L+ AC   G +  A        K N +  P VY +  N  +  G 
Sbjct: 898 ----PFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNAR-NPAVYILLSNVYAAAGR 952

Query: 242 WEFACSVYDDMTKKGV 257
           W+    +   M  +G+
Sbjct: 953 WDDVAKIRRVMEGRGI 968


>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
 gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
          Length = 1443

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 143/336 (42%), Gaps = 43/336 (12%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG------KVD 144
           T+  FN +M V A S   + A Q+L  + + G+  D   + TLI   +KSG       +D
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALD 279

Query: 145 AMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA-EVHP------------- 186
            +FE     ++PD + +N LI+AC QS  ++ A  V  EM A E  P             
Sbjct: 280 LLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHG 339

Query: 187 -------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                                PD +T  +L+ A A  G VD+     + + K   K    
Sbjct: 340 RCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEI 399

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y   I+   + G  + A  +YD+M   G  PD V  + +ID  G   K+  A ++L++ 
Sbjct: 400 TYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDM 459

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
            + G+   ++++S+L+ A +       A + ++ M +  +KP       ++       + 
Sbjct: 460 ADAGLKPTLVAFSALICAYAKGGRRADAEKTFDCMIASGVKPDRLAYLVMLDVFARSGET 519

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
            K + +   M +    P+   Y +LLVA  ++D  E
Sbjct: 520 EKMLRLYRTMMNDNYRPDDDMYQVLLVALAKEDKCE 555



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 122/272 (44%), Gaps = 7/272 (2%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG--QVDRAREV 213
           VFNA++    +SG  D A  +L  M+     +DPD ++   L+ A + +G      A ++
Sbjct: 223 VFNAMMGVYARSGRFDDARQLLDTMHD--RGIDPDLVSFNTLINARSKSGCLAAGVALDL 280

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
              + +  ++     Y   I+ CSQ+ + E A +V+++M      PD    +A++   G 
Sbjct: 281 LFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWTYNAMVSVHGR 340

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
            GK E A  +  E   +G     ++Y+SL+ A +   N  K     E +     K    T
Sbjct: 341 CGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEELVKAGFKKNEIT 400

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            N +I       +L   + +  +M+++G  P+ +TY++++ +  + D +     +L    
Sbjct: 401 YNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMA 460

Query: 394 EDGVIPNLVMFK---CIIGMCSRRYEKARTLN 422
           + G+ P LV F    C      RR +  +T +
Sbjct: 461 DAGLKPTLVAFSALICAYAKGGRRADAEKTFD 492



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 148/341 (43%), Gaps = 16/341 (4%)

Query: 83   FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
              K  P PT+ + N +M         +  + V+  +Q+   K        ++   AK+G 
Sbjct: 806  MIKTGPLPTVDSVNGMMRALIVDGRLDELYVVVGELQDMDFKISKSTVLLMLDAFAKAGD 865

Query: 143  VDAMFENVK-----------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            V   FE +K           P+  ++ ++ +             ++AEM  E     PD 
Sbjct: 866  V---FEVMKIYNGMKAAGYLPNMHLYRSMTSLLCHHNRFRDVELMIAEM--EGAGFKPDL 920

Query: 192  ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
                +L+     AG  DR  +VY+ I +  ++   + Y   I    ++   E   ++ ++
Sbjct: 921  SIFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNE 980

Query: 252  MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
            M K+G+ P      +L+  +  A   E A ++ +E +++   +    Y  +M    NA N
Sbjct: 981  MGKRGLTPKLQSYKSLLAASAKAELREQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGN 1040

Query: 312  WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
              KA  L   MK   ++PT++TM+ L+T+     Q  +   VL+ +KS  L  +T+ YS 
Sbjct: 1041 HSKAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPHEAENVLNSLKSSSLEVSTLPYST 1100

Query: 372  LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
            +  A  +  D ++G+  L + K DGV P+  ++ C I   S
Sbjct: 1101 VFDAYLKNGDYDLGIKKLLEMKRDGVEPDHQVWTCFIRAAS 1141



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 127/264 (48%), Gaps = 16/264 (6%)

Query: 152 PDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           PD V F  ++ A G+S    A+D AF+ LA   A      P    +  ++     A Q  
Sbjct: 155 PDEVAF--VVRAVGESSWRRALD-AFEWLARSTA------PASRAVAVVLGVLGRARQDS 205

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A EV+  +       T +V+   +   +++G ++ A  + D M  +G+ PD V  + LI
Sbjct: 206 IAEEVF--LRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLI 263

Query: 269 DFAGHAGKVEA--AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           +    +G + A  A ++L E +  G+   +I+Y++L+ ACS + N + A+ ++E M + +
Sbjct: 264 NARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASE 323

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
            +P + T NA+++      +  +   +  ++   G  P+ +TY+ LL A  ++ +V+   
Sbjct: 324 CRPDLWTYNAMVSVHGRCGKAEEAERLFGELVEKGFMPDAVTYNSLLYAFAKEGNVDKVE 383

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGM 410
               +  + G   N + +  +I M
Sbjct: 384 HTCEELVKAGFKKNEITYNTMIHM 407



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 79/387 (20%), Positives = 149/387 (38%), Gaps = 68/387 (17%)

Query: 153  DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
            DR ++NALI A  +SG  ++A  V   M  +  P+ P   ++  +M+A    G++D    
Sbjct: 779  DRRIWNALIHAYAESGLYEKARAVFDNM-IKTGPL-PTVDSVNGMMRALIVDGRLDELYV 836

Query: 213  VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
            V   +   + K +     + ++  ++ GD      +Y+ M   G +P+     ++     
Sbjct: 837  VVGELQDMDFKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMTSLLC 896

Query: 273  HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            H  +      ++ E +  G                                    KP +S
Sbjct: 897  HHNRFRDVELMIAEMEGAG-----------------------------------FKPDLS 921

Query: 333  TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
              N+L+          +T +V   +   GL P+  TY+ L+V   R    E G  LL++ 
Sbjct: 922  IFNSLLNMYTAAGNFDRTTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEM 981

Query: 393  KEDGVIPNLVMFKCIIG-----------------MCSRRYEKARTLNEHVLSF--NSG-R 432
             + G+ P L  +K ++                  M S+ Y+  R++   ++    N+G  
Sbjct: 982  GKRGLTPKLQSYKSLLAASAKAELREQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNH 1041

Query: 433  PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADAL 492
             + EN      L V +E  +  TI T+ ++    G    P+ A   E ++ +L  S+  +
Sbjct: 1042 SKAEN-----LLAVMKEDGIEPTIATMHILMTSYGTAGQPHEA---ENVLNSLKSSSLEV 1093

Query: 493  KRSNLCSLIDGF---GEYDPRAFSLLE 516
                  ++ D +   G+YD     LLE
Sbjct: 1094 STLPYSTVFDAYLKNGDYDLGIKKLLE 1120



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 94/215 (43%), Gaps = 10/215 (4%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
            P   T+N L+ +   S   E  F +L  + + GL    + Y +L+   AK+    + D +
Sbjct: 953  PDEDTYNTLIVMYCRSLRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQL 1012

Query: 147  FENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            FE ++      +R +++ ++     +G   +A ++LA M  +   ++P   T+  LM + 
Sbjct: 1013 FEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKED--GIEPTIATMHILMTSY 1070

Query: 202  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              AGQ   A  V   +   +++ +   Y+   +   + GD++       +M + GV PD 
Sbjct: 1071 GTAGQPHEAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDLGIKKLLEMKRDGVEPDH 1130

Query: 262  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
               +  I  A    +   A  +L+  ++ G  + I
Sbjct: 1131 QVWTCFIRAASLCEQTADAILLLKSLQDCGFDLPI 1165



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 91/208 (43%), Gaps = 9/208 (4%)

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           + TP+     +    ++  W  A   ++ + +    P    ++ ++   G A +   A E
Sbjct: 152 RATPDEVAFVVRAVGESS-WRRALDAFEWLAR-STAPASRAVAVVLGVLGRARQDSIAEE 209

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +      +G +V +  ++++MG  + +  +  A +L + M    + P + + N LI A  
Sbjct: 210 VFLRFAGEGATVQV--FNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARS 267

Query: 343 DGDQLPK--TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
               L     +++L +++  GL P+ ITY+ L+ AC +  ++E  + +  +       P+
Sbjct: 268 KSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPD 327

Query: 401 LVMFKCII---GMCSRRYEKARTLNEHV 425
           L  +  ++   G C +  E  R   E V
Sbjct: 328 LWTYNAMVSVHGRCGKAEEAERLFGELV 355



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 143/348 (41%), Gaps = 32/348 (9%)

Query: 35   LIRQGRISE---CIDLLEDMERK-----GLLDMDKVYHA-RFFNVCKSQKAIKEAFRFFK 85
            LI  GR+ E    +  L+DM+ K      LL +D    A   F V K    +K A     
Sbjct: 825  LIVDGRLDELYVVVGELQDMDFKISKSTVLLMLDAFAKAGDVFEVMKIYNGMKAA----G 880

Query: 86   LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
             +PN  L   +M   +C  ++  +    +  + + AG K D  ++ +L+     +G  D 
Sbjct: 881  YLPNMHLYR-SMTSLLCHHNRFRDVELMIAEM-EGAGFKPDLSIFNSLLNMYTAAGNFDR 938

Query: 146  MFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
              +         ++PD   +N LI    +S   +  F +L EM      + P   +  +L
Sbjct: 939  TTQVYQSILEAGLEPDEDTYNTLIVMYCRSLRPEEGFTLLNEMGK--RGLTPKLQSYKSL 996

Query: 198  MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            + A A A   ++A ++++ +   + +    +Y + +      G+   A ++   M + G+
Sbjct: 997  LAASAKAELREQADQLFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGI 1056

Query: 258  IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             P    +  L+   G AG+   A  +L   K+  + V  + YS++  A     ++   ++
Sbjct: 1057 EPTIATMHILMTSYGTAGQPHEAENVLNSLKSSSLEVSTLPYSTVFDAYLKNGDYDLGIK 1116

Query: 318  LYEHMKSIKLKPTVSTMNALITA--LCDGDQLPKTMEVLSDMKSLGLC 363
                MK   ++P        I A  LC+     +T + +  +KSL  C
Sbjct: 1117 KLLEMKRDGVEPDHQVWTCFIRAASLCE-----QTADAILLLKSLQDC 1159


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/376 (23%), Positives = 174/376 (46%), Gaps = 19/376 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-----N 89
           L + G +++ +++ E M+ +  +     Y+    + C + +   +A   F+ +       
Sbjct: 20  LAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGE-FGKALDLFQSMKREKRVE 78

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   T+N L+S   SS ++EGA ++L  +++  + A+   Y+++I +  K  K +  ++ 
Sbjct: 79  PDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKV 138

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                     PD   FN ++    +S  +++A +V   M    +   PD+++   L+   
Sbjct: 139 LEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGY--KPDNVSYHILIHGL 196

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIP 259
           A  G++D + ++   +        P V T +  I+   +TG+ E A  V+  M + G  P
Sbjct: 197 AKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKP 256

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           ++   + LI     A KV  A E+ ++     I    ++Y+SL+       +  +A +LY
Sbjct: 257 NKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLY 316

Query: 320 EHMKS-IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
             M     L+PT+ T N LI   C   +L +  E++++M + GL  +T TY IL+    R
Sbjct: 317 REMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSR 376

Query: 379 KDDVEVGLMLLSQAKE 394
              ++  L +  Q +E
Sbjct: 377 ATKLDEALEVYKQMRE 392



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 163/382 (42%), Gaps = 22/382 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G       LL +M  K +      Y +   ++ K  K  +E+++  + 
Sbjct: 83  TYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAKP-EESYKVLEE 141

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     NP +  FN +M   A S + E A +V + + E+G K D   Y  LI   AK GK
Sbjct: 142 MMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGK 201

Query: 143 VDAMFENVK----------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           +D   + +           P+ + F+ LI    ++G +++A +V   M        P+  
Sbjct: 202 LDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLE--AGCKPNKY 259

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+     A +V +ARE+++ + +  I      Y   I    + G  + A  +Y +M
Sbjct: 260 TYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREM 319

Query: 253 TK-KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           +   G+ P  V  + LID     GK+  A E++ E   +G++    +Y  L+   S A  
Sbjct: 320 SGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATK 379

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +ALE+Y+ M+  K      +  + +  LC    + +   V    +  G  PN  T+ I
Sbjct: 380 LDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRI 439

Query: 372 LLVACERKDDVEVGLMLLSQAK 393
           L  +  +   VE    L+  AK
Sbjct: 440 LSESLIKLGRVEDAQKLMEPAK 461



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 128/305 (41%), Gaps = 16/305 (5%)

Query: 124 KADCKL----YTTLITTCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVD 171
           KA C +    Y  ++ + AK+G +     +FE +K     P  V +N LI +   +G   
Sbjct: 3   KAKCAIGGDAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFG 62

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
           +A D+   M  E   V+PD  T   L+    ++G  + AR++   +   NI      Y+ 
Sbjct: 63  KALDLFQSMKREKR-VEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSS 121

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            I    +    E +  V ++M   G  PD    + ++     +  +E A E+ Q     G
Sbjct: 122 IIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESG 181

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHM--KSIKLKPTVSTMNALITALCDGDQLPK 349
                +SY  L+   +      ++L++   M  ++    P V T + LI  LC   +L K
Sbjct: 182 YKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEK 241

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
            +EV   M   G  PN  TY+ L+    R + V     L  +  +  + P+ V +  +I 
Sbjct: 242 ALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIA 301

Query: 409 GMCSR 413
           G C R
Sbjct: 302 GYCKR 306



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 126/306 (41%), Gaps = 51/306 (16%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYH------ARFFNVCKSQKAIKE-AFRFFKLVPN 89
           R   + +  ++ + M   G    +  YH      A+   + +S K + E A R    VPN
Sbjct: 163 RSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPN 222

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAM 146
             + TF+ L+     + + E A +V   + EAG K +   YTTLI    ++ KV     +
Sbjct: 223 --VITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQAREL 280

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMN--AEVHP------------- 186
           FE      + PD V +N+LI    + G++D A  +  EM+  A + P             
Sbjct: 281 FEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFC 340

Query: 187 -------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                              +  D  T   L+   + A ++D A EVYK + +      P 
Sbjct: 341 KLGKLGRANELVAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPV 400

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
                +    +TG+ + A +V++   K G +P+      L +     G+VE A ++++ A
Sbjct: 401 SCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLMEPA 460

Query: 288 KNQGIS 293
           K + I+
Sbjct: 461 KARDIT 466


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 145/319 (45%), Gaps = 18/319 (5%)

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITAC 164
           Q+L+L    G +     Y+ LI    KSG +        D + +  +PD +V++ LI   
Sbjct: 437 QILKL----GFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGL 492

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
            + G V  A     +  A    + P+  T+  L+ +      +  A +VY ++   NIK 
Sbjct: 493 CKQGLVGDALRFFFQ--AVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKA 550

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
               YTI I   +Q G  + A  ++  M KK   PD +    LID      K  A   I 
Sbjct: 551 DTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIF 610

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
                  ++  I  Y+ L+   S   + + AL L+ H+     KP V T N +I   C+ 
Sbjct: 611 DFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNF 670

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            +L   +++ + M S  L PN IT++IL+ A  R+  ++  +++ S+  E+G  PNLV +
Sbjct: 671 KRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTY 730

Query: 405 KCIIGMCSRRYEKARTLNE 423
            C+I      Y K++++ E
Sbjct: 731 SCLI----HGYFKSQSMME 745



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 175/408 (42%), Gaps = 17/408 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----P 88
           NR + +G +   +   + + + G   +D +   +       Q  I  A  +F +V    P
Sbjct: 245 NRFMNKGEVEMGLRFHKALVQGGF-GLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGP 303

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
            P + TF+ L+       + + AF +  ++   G+  D  +Y+ LI    K+G+++    
Sbjct: 304 KPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQR 363

Query: 145 ----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
               A+ + +K D V F++ + A  + G + R   +   M  E   + P+ ++   L+K 
Sbjct: 364 LLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNE--GISPNVVSCSILIKG 421

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G++  A  ++  I K   + +   Y+  I    ++G+      +Y+DM KK   PD
Sbjct: 422 FCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPD 481

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  S LI+     G V  A     +A N+G+S  + + ++L+ +    K    A+++Y 
Sbjct: 482 TIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYY 541

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M  + +K    T   LI       ++ + + +   M      P+ ITY  L+    +  
Sbjct: 542 LMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLK 601

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVL 426
               GL +     ++ V P++ ++  +I M SR    E A  L  HV+
Sbjct: 602 KSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVV 649



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 152/365 (41%), Gaps = 30/365 (8%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y+ LI    + G + +   L EDM +K       VY      +CK Q  + +A RFF  
Sbjct: 449 TYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCK-QGLVGDALRFFFQ 507

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             N    P + T N L+      K   GA +V  L+    +KAD   YT LI   A+ G+
Sbjct: 508 AVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGR 567

Query: 143 VDAMF--------ENVKPDRVVFNALITAC---GQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           VD           ++ KPD + +  LI       +S A    FD + +     + V PD 
Sbjct: 568 VDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCK-----NAVAPDI 622

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVY 249
                L+   +  G ++ A  ++  +H       P+V+T    I C       + A  ++
Sbjct: 623 AIYNVLINMHSREGHLEAALGLF--VHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLF 680

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSN 308
             MT + + P+ +  + LID     G+++ A  +  +   +G    +++YS L+ G   +
Sbjct: 681 AKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKS 740

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
               +  L+LY  M    + P + + + LI  LC    + +            L P+ I 
Sbjct: 741 QSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDVIA 800

Query: 369 YSILL 373
           Y+IL+
Sbjct: 801 YTILI 805



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/273 (23%), Positives = 119/273 (43%), Gaps = 23/273 (8%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           +  +A+   F+  K    P + T+  L+      K S     +   + +  +  D  +Y 
Sbjct: 567 RVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYN 626

Query: 132 TLITTCAKSGKVDA---MFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
            LI   ++ G ++A   +F +V     KPD   FN +I        +D A  + A+M +E
Sbjct: 627 VLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSE 686

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCC------ 236
              + P+ IT   L+ A    G++D A  ++ KM+ +      PE   +  +C       
Sbjct: 687 --QLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEE-----GPEPNLVTYSCLIHGYFK 739

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           SQ+   E    +Y++M +  + P+ V  S LID     G ++ A    + A ++ +   +
Sbjct: 740 SQSM-MESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCALDKHLLPDV 798

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
           I+Y+ L+          +A+ LY++M   +L P
Sbjct: 799 IAYTILIRGYCKVGRLTEAMMLYDNMLLNRLTP 831



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 101/251 (40%), Gaps = 8/251 (3%)

Query: 156 VFNALITACGQSGAVDRAF-DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           VF+  I   G       AF D   ++++  H V       G L+++    G  D++ +++
Sbjct: 136 VFDKFIMQFGNDYDTLDAFRDGFCDLDSTNHSV-----VYGFLIESYCRKGMFDKSVDIF 190

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM-TKKGVIPDEVFLSALIDFAGH 273
             +    I  +P V  + +     +   E     Y ++ +     P  V+   +  F  +
Sbjct: 191 MHVCVKGIFVSPNVVYLLLGSLIDSHCVEVIVDKYGELCSAMREQPFSVYEFVMNRFM-N 249

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
            G+VE      +     G  + II+ + ++       +   A + +  +  I  KP V T
Sbjct: 250 KGEVEMGLRFHKALVQGGFGLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVVT 309

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            + LI A C    L K   +   M   G+ P+ I YSIL+    +   +E G  LL  A 
Sbjct: 310 FSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVAL 369

Query: 394 EDGVIPNLVMF 404
           + G+  ++V F
Sbjct: 370 DKGIKLDVVGF 380



 Score = 38.9 bits (89), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 76/183 (41%), Gaps = 11/183 (6%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--- 144
           P P + TFN ++    + K  + A Q+   +    L+ +   +T LI    + G++D   
Sbjct: 653 PKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAM 712

Query: 145 AMF-----ENVKPDRVVFNALITACGQSGAV-DRAFDVLAEMNAEVHPVDPDHITIGALM 198
            MF     E  +P+ V ++ LI    +S ++ +    +  EM    + + P+ ++   L+
Sbjct: 713 LMFSKMLEEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLE--NNIAPNIVSYSILI 770

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                 G +  A   ++     ++      YTI I    + G    A  +YD+M    + 
Sbjct: 771 DGLCKRGLMKEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNMLLNRLT 830

Query: 259 PDE 261
           PD 
Sbjct: 831 PDR 833


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/427 (20%), Positives = 182/427 (42%), Gaps = 56/427 (13%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL-- 92
           L+R+  I E  DL   M  +G+       H      C  +  ++EA  +F+      +  
Sbjct: 195 LVRRNMIGELRDLYNKMVLRGIYGDHFTVHV-MVRACLKEGRVEEAEEYFRETKERGVKL 253

Query: 93  --STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
               +++++       +S    ++L  ++E G       +T++I  C   G +       
Sbjct: 254 DAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLK 313

Query: 144 DAMFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           + M    KP + VV  +L+      G +D A ++  ++  +   + P+ +T   L++ C 
Sbjct: 314 EEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITED--GLFPNKVTYSVLIEGCC 371

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPE----------------------------------- 227
           N+G +++A E+Y  +    + G P                                    
Sbjct: 372 NSGNIEKASELYTQMK---LNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVAN 428

Query: 228 --VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
              Y I ++   + G  + ACS+ D+M  +G++P+ V  + +I      G ++ A  +  
Sbjct: 429 IFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFS 488

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           +   + +   +++YS L+       + +KAL+L++ M S+ + PT  T N +I  LC   
Sbjct: 489 DMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVG 548

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           Q+ +  + L +    G  P+ +TY+ ++    ++ +++  L +  +  E GV PN+V + 
Sbjct: 549 QMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYT 608

Query: 406 CII-GMC 411
            +I G C
Sbjct: 609 SLINGFC 615



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/385 (19%), Positives = 167/385 (43%), Gaps = 13/385 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L + G++ E   LL++M  +G++     Y+      C+       +  F  ++     P 
Sbjct: 439 LCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPN 498

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK 151
           + T+++L+       DSE A  +   +    +      + T+I    K G++    + +K
Sbjct: 499 VVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLK 558

Query: 152 --------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                   P  + +N+++    + G +D A  V  EM      V P+ +T  +L+     
Sbjct: 559 NFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCE--FGVSPNVVTYTSLINGFCK 616

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           + ++D A +    + +  ++     Y+  I+   +  D E A  ++ ++ + G+ P+ + 
Sbjct: 617 SNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIV 676

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +++I        +EAA    ++  N  I   + +Y++L+           A +LY  M 
Sbjct: 677 YNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEML 736

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           S  + P + T + L+  LC+  QL    ++L +M    + P+ + Y+ L+    R+ +++
Sbjct: 737 SKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLK 796

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
               L  +  + G++P+ V +  +I
Sbjct: 797 EAFTLHDEMLDRGLVPDDVTYDILI 821



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 153/351 (43%), Gaps = 14/351 (3%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           +VPN  +S  +M++  C    + + A  V   +    LK +   Y+ LI    K G  + 
Sbjct: 460 MVPN-VVSYNDMILGHCRKG-NMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEK 517

Query: 146 MFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
             +        N+ P    FN +I    + G +  A D L     E     P  +T  ++
Sbjct: 518 ALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEE--GFIPSCMTYNSI 575

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +      G +D A  VY+ + ++ +      YT  IN   ++   + A    D+M +KG+
Sbjct: 576 VDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGL 635

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             D    SALID       +E+A ++  E    G+S   I Y+S++    +  N + AL 
Sbjct: 636 ELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALV 695

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
            Y+ M + ++   + T   LI  L    +L    ++  +M S G+ P+ IT+ +L+    
Sbjct: 696 WYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLC 755

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVL 426
            K  +E    +L +     + P+++++  +I    R    ++A TL++ +L
Sbjct: 756 NKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEML 806



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 151/340 (44%), Gaps = 17/340 (5%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQ 74
           A D+   + +Y+ LI    ++G   + +DL + M    +   D  ++     +CK     
Sbjct: 492 ARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMS 551

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +A  +   F +    P+  T+N ++       + + A  V R + E G+  +   YT+LI
Sbjct: 552 EARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLI 611

Query: 135 TTCAKSGKVDAMFEN--------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               KS ++D   +         ++ D   ++ALI    +   ++ A D+  E+  EV  
Sbjct: 612 NGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFEL-LEVG- 669

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + P+ I   +++    +   ++ A   YK +    I      YT  I+   + G   FA 
Sbjct: 670 LSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFAS 729

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +Y +M  KG++PD +    L++   + G++E A +IL+E   + ++  ++ Y++L+   
Sbjct: 730 DLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGY 789

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               N ++A  L++ M    L P   T + LI     GD+
Sbjct: 790 FREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDR 829



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 76/386 (19%), Positives = 156/386 (40%), Gaps = 81/386 (20%)

Query: 123 LKADCKLYTTLITTCAKSGKVD-------AMF-ENVKPDRVVFNALITACGQSGAVDRAF 174
            + D +++  L+    ++ +++       AM  ++V P     N L+TA  +   +    
Sbjct: 146 FELDHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELR 205

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
           D+  +M   +  +  DH T+  +++AC   G+V+ A E ++   +  +K     Y+I I 
Sbjct: 206 DLYNKM--VLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQ 263

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDE-VFLSALIDFAGHAGKVEA-------------- 279
              +  +      + ++M ++G +P E  F S ++        VEA              
Sbjct: 264 AVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPM 323

Query: 280 --------------------AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
                               A  +  +    G+    ++YS L+  C N+ N +KA ELY
Sbjct: 324 NLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELY 383

Query: 320 EHMKSIKLKPTVSTMNALI----------------------------------TALCDGD 345
             MK   + P+V  +N+L+                                  + LC G 
Sbjct: 384 TQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGG 443

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           ++ +   +L +M + G+ PN ++Y+ +++   RK ++++   + S      + PN+V + 
Sbjct: 444 KMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYS 503

Query: 406 CIIGMCSRR--YEKARTLNEHVLSFN 429
            +I    ++   EKA  L + +LS N
Sbjct: 504 ILIDGNFKKGDSEKALDLFDQMLSLN 529



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 55/278 (19%), Positives = 106/278 (38%), Gaps = 18/278 (6%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           V +AL+       +  R F         +  VD   + +  LM++    G    AR++  
Sbjct: 63  VIDALLCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGH---ARKLLN 119

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
                +   +P V+   +  C++  D+E    V++             L+A I     A 
Sbjct: 120 RYVSGDSDPSPVVFVDHLINCAKRFDFELDHRVFN-----------YLLNAYI----RAN 164

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           ++E A +       Q +   +   + L+ A        +  +LY  M    +     T++
Sbjct: 165 RIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVH 224

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            ++ A     ++ +  E   + K  G+  +   YSI++ A  +K +  +GL LL + KE 
Sbjct: 225 VMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKER 284

Query: 396 GVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP 433
           G +P+   F  +I  C  +      L       N G+P
Sbjct: 285 GWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKP 322


>gi|302757297|ref|XP_002962072.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
 gi|300170731|gb|EFJ37332.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
          Length = 413

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/336 (22%), Positives = 143/336 (42%), Gaps = 34/336 (10%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           PTL T+  +M   A  +  E A                ++++ L+           +  +
Sbjct: 60  PTLYTYTAVMRALAHVQGWESAH---------------RMFSELV-----------VHGS 93

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE--VHPVDPDHITIGALMKACANAGQV 207
           +KPD  ++N ++ A G+   ++R       M  E  V  V     T   L+       Q 
Sbjct: 94  LKPDVAMYNTMLAAYGRGHKLERVLQTWERMRKEGCVENVG----TYCLLVSTFVQTNQA 149

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A + Y  ++   +K T  +Y   +  C+  G W  A + + +M + G  P  V  + L
Sbjct: 150 DLALDAYARMNSQGLKATDGIYRGLVCVCATQGRWLVALTFFKEMLESGCKPTIVTYNVL 209

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           +   G AGK E   ++L   K  G++    + ++++     A+ + +A+  +  +KS  +
Sbjct: 210 MRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLNGLIAAREFDRAMLFFHSVKSSGM 269

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           K      N ++ A          + ++ +M+  G+ PN +T+  LLVACE    VEV L 
Sbjct: 270 KLDREVYNVILVACQKSKNWEAALSLVQEMEQTGIAPNEVTFGPLLVACENAKQVEVALR 329

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTL 421
           L    K+   +PN  +   +I  C +   +++AR +
Sbjct: 330 LYEHMKQRRCVPNTHVVASLIRACGKELMWQQARNI 365



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 125/285 (43%), Gaps = 15/285 (5%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VD 144
           + T+ +L+S    +  ++ A      +   GLKA   +Y  L+  CA  G+         
Sbjct: 133 VGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQGRWLVALTFFK 192

Query: 145 AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
            M E+  KP  V +N L+ A G++G  +   D+L  M A    V PD  T+ A++     
Sbjct: 193 EMLESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMKAS--GVAPDFYTVNAVLNGLIA 250

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           A + DRA   +  +    +K   EVY + +  C ++ +WE A S+  +M + G+ P+EV 
Sbjct: 251 AREFDRAMLFFHSVKSSGMKLDREVYNVILVACQKSKNWEAALSLVQEMEQTGIAPNEVT 310

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
              L+    +A +VE A  + +  K +         +SL+ AC     WQ+A  +Y    
Sbjct: 311 FGPLLVACENAKQVEVALRLYEHMKQRRCVPNTHVVASLIRACGKELMWQQARNIYRVS- 369

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                P V   NALI A C   +     +V   M   G   N +T
Sbjct: 370 ----SPNVYVYNALIDAYCRSQKYHLAKKVDRRMIEEGCQRNNVT 410



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 24/239 (10%)

Query: 45  IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMS 100
           +D    M  +GL   D +Y      VC +Q     A  FFK +      PT+ T+N+LM 
Sbjct: 153 LDAYARMNSQGLKATDGIYRG-LVCVCATQGRWLVALTFFKEMLESGCKPTIVTYNVLMR 211

Query: 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFENVKP----- 152
               +   E    +L  ++ +G+  D      ++     + + D     F +VK      
Sbjct: 212 ALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLNGLIAAREFDRAMLFFHSVKSSGMKL 271

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           DR V+N ++ AC +S   + A  ++ EM  E   + P+ +T G L+ AC NA QV+ A  
Sbjct: 272 DREVYNVILVACQKSKNWEAALSLVQEM--EQTGIAPNEVTFGPLLVACENAKQVEVALR 329

Query: 213 VYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           +Y+  H    +  P  + +A  I  C +   W+ A ++Y   +     P+    +ALID
Sbjct: 330 LYE--HMKQRRCVPNTHVVASLIRACGKELMWQQARNIYRVSS-----PNVYVYNALID 381



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 64/333 (19%), Positives = 126/333 (37%), Gaps = 75/333 (22%)

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
           ++G    AF VL  ++     +  +     +L+      G    A  +++ + +  +  T
Sbjct: 4   RAGRRRTAFKVLEWLSDRKRGIHAN--AYNSLITGLMKDGDEADAIAIFERMKQDRVAPT 61

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEIL 284
              YT  +   +    WE A  ++ ++   G + PD    + ++   G   K+E   +  
Sbjct: 62  LYTYTAVMRALAHVQGWESAHRMFSELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTW 121

Query: 285 QEAKNQGI--SVG----IIS-----------------------------YSSLMGACSNA 309
           +  + +G   +VG    ++S                             Y  L+  C+  
Sbjct: 122 ERMRKEGCVENVGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQ 181

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT- 368
             W  AL  ++ M     KPT+ T N L+ AL    +    +++L  MK+ G+ P+  T 
Sbjct: 182 GRWLVALTFFKEMLESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTV 241

Query: 369 ----------------------------------YSILLVACERKDDVEVGLMLLSQAKE 394
                                             Y+++LVAC++  + E  L L+ + ++
Sbjct: 242 NAVLNGLIAAREFDRAMLFFHSVKSSGMKLDREVYNVILVACQKSKNWEAALSLVQEMEQ 301

Query: 395 DGVIPNLVMFKCIIGMC--SRRYEKARTLNEHV 425
            G+ PN V F  ++  C  +++ E A  L EH+
Sbjct: 302 TGIAPNEVTFGPLLVACENAKQVEVALRLYEHM 334



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 91/210 (43%), Gaps = 16/210 (7%)

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           AG+   AF++L+   ++   +   +Y+SL+       +   A+ ++E MK  ++ PT+ T
Sbjct: 5   AGRRRTAFKVLEWLSDRKRGIHANAYNSLITGLMKDGDEADAIAIFERMKQDRVAPTLYT 64

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQA 392
             A++ AL           + S++   G L P+   Y+ +L A  R   +E  L    + 
Sbjct: 65  YTAVMRALAHVQGWESAHRMFSELVVHGSLKPDVAMYNTMLAAYGRGHKLERVLQTWERM 124

Query: 393 KEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL---------- 442
           +++G + N+  +  ++    +  +    L+ +    + G    +  +  L          
Sbjct: 125 RKEGCVENVGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIYRGLVCVCATQGRW 184

Query: 443 --ALMVYREAIVAGTIPTV---EVVSKVLG 467
             AL  ++E + +G  PT+    V+ + LG
Sbjct: 185 LVALTFFKEMLESGCKPTIVTYNVLMRALG 214


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 184/410 (44%), Gaps = 56/410 (13%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---- 76
           VS  ++++N +I    R G++ +  D+ +D++  GL      Y++     CK   A    
Sbjct: 187 VSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMY 246

Query: 77  -----IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
                +KE     +   +PT  TF +L++    + ++  A +V   +++ G+ A    Y 
Sbjct: 247 HVDMLLKE---MVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYN 303

Query: 132 TLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           +LI+     GKV+   E VK                        ++ EM  E   + P+ 
Sbjct: 304 SLISGLCSEGKVE---EGVK------------------------LMEEM--EDLGLSPNE 334

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           IT G ++K     G +  A +    + + N++    +YTI I+   + G  E A +V + 
Sbjct: 335 ITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEA 394

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M KKG+ P+    + LI     +G   +A  +L E K +GI   +++Y+ L+GA      
Sbjct: 395 MAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGE 454

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            +KA++L + M  + L+P   T N +I   CD   +    E+ + M+      N +TY++
Sbjct: 455 VRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNV 514

Query: 372 LLVACERKDDVEVGLM-----LLSQAKEDGVIPNLVMFKCII-GMCSRRY 415
            +     K   ++G M     LL++  +  ++PN + ++ I  GM  + Y
Sbjct: 515 FI-----KYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGY 559



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 142/335 (42%), Gaps = 53/335 (15%)

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-C-- 201
           A+   V PD   FN +I+   + G + +A DV  ++ A    + P   T  +L+   C  
Sbjct: 182 ALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKA--WGLAPSVATYNSLIDGYCKK 239

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AG +     + K + +  I  T   + + IN   +  +   A  V+++M ++G+    
Sbjct: 240 GGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASV 299

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM------GACSNAKNW--- 312
           V  ++LI      GKVE   ++++E ++ G+S   I++  ++      G  ++A +W   
Sbjct: 300 VTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDG 359

Query: 313 --------------------------QKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
                                     + A+ + E M    + P V+T N LIT       
Sbjct: 360 MTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGD 419

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
                 +L +MK  G+  + +TY++L+ A   K +V   + LL +  E G+ PN + +  
Sbjct: 420 WRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNT 479

Query: 407 II-GMCSR-----------RYEKARTLNEHVLSFN 429
           II G C +           R EK R    +V+++N
Sbjct: 480 IIQGFCDKGNIKSAYEIRTRMEKCRK-RANVVTYN 513



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 76/158 (48%), Gaps = 4/158 (2%)

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P    ++AL+     A +V+ A +  + A  + +S  I ++++++         +KA ++
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV---LSDMKSLGLCPNTITYSILLVA 375
            + +K+  L P+V+T N+LI   C          V   L +M   G+ P  +T+ +L+  
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
             +  +    + +  + K+ G+  ++V +  +I G+CS
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCS 311


>gi|2335106|gb|AAC02776.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 810

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 164/374 (43%), Gaps = 25/374 (6%)

Query: 81  FRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           F++ K+  N       +NM++ + A     + A  +   +Q+   K D + Y  LI    
Sbjct: 130 FKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHG 189

Query: 139 KSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           ++G+         D +   + P R  +N LI ACG SG    A +V  +M    + V PD
Sbjct: 190 RAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTD--NGVGPD 247

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            +T   ++ A  +  Q  +A   ++++    ++     + I I C S+ G    A  +++
Sbjct: 248 LVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFN 307

Query: 251 DMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            M +K     PD V  ++++      G++E    + +    +G+   I+SY++LMGA + 
Sbjct: 308 SMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAV 367

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                 AL +   +K   + P V +   L+ +     Q  K  EV   M+     PN +T
Sbjct: 368 HGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVT 427

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK----------- 417
           Y+ L+ A      +   + +  Q ++DG+ PN+V    ++  CSR  +K           
Sbjct: 428 YNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQ 487

Query: 418 ARTLNEHVLSFNSG 431
           +R +N +  ++NS 
Sbjct: 488 SRGINLNTAAYNSA 501



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 163/350 (46%), Gaps = 21/350 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G   E +++ + M   G+   D V H    +  KS +   +A  +F+L
Sbjct: 215 TYNNLINACGSSGNWREALEVCKKMTDNGV-GPDLVTHNIVLSAYKSGRQYSKALSYFEL 273

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE--AGLKADCKLYTTLITTCAKS 140
           +      P  +TFN+++   +    S  A  +   ++E  A  + D   +T+++   +  
Sbjct: 274 MKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVK 333

Query: 141 GKVD---AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+++   A+FE      +KP+ V +NAL+ A    G    A  VL ++    + + PD +
Sbjct: 334 GEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ--NGIIPDVV 391

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +   L+ +   + Q  +A+EV+ M+ K   K     Y   I+     G    A  ++  M
Sbjct: 392 SYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQM 451

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            + G+ P+ V +  L+     + K      +L  A+++GI++   +Y+S +G+  NA   
Sbjct: 452 EQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAEL 511

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +KA+ LY+ M+  K+K    T   LI+  C   + P+ +  L +M+ L +
Sbjct: 512 EKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSI 561



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 129/297 (43%), Gaps = 38/297 (12%)

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           R  F  LI    + G ++   +V   M  + +    + I    +++  A    VD+AR +
Sbjct: 107 RKNFPVLIRELSRRGCIELCVNVFKWMKIQKNYCARNDI-YNMMIRLHARHNWVDQARGL 165

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           +  + K++ K   E Y   IN   + G W +A ++ DDM +  + P     + LI+  G 
Sbjct: 166 FFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGS 225

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           +G    A E+ ++  + G+   +++++ ++ A  + + + KAL  +E MK  K++P  +T
Sbjct: 226 SGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTT 285

Query: 334 MNALITALCDGDQLPKTMEVLSDMK----------------------------------- 358
            N +I  L    Q  + +++ + M+                                   
Sbjct: 286 FNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEA 345

Query: 359 --SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             + GL PN ++Y+ L+ A          L +L   K++G+IP++V + C++    R
Sbjct: 346 MVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGR 402



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 152/332 (45%), Gaps = 11/332 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDA 145
           P+ ST+N L++ C SS +   A +V + + + G+  D   +  ++ +  KSG    K  +
Sbjct: 211 PSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTHN-IVLSAYKSGRQYSKALS 269

Query: 146 MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            FE      V+PD   FN +I    + G   +A D+   M  +     PD +T  ++M  
Sbjct: 270 YFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHL 329

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            +  G+++  R V++ +    +K     Y   +   +  G    A SV  D+ + G+IPD
Sbjct: 330 YSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPD 389

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + L++  G + +   A E+    + +     +++Y++L+ A  +     +A+E++ 
Sbjct: 390 VVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFR 449

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+   +KP V ++  L+ A     +      VLS  +S G+  NT  Y+  + +     
Sbjct: 450 QMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAA 509

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           ++E  + L    ++  V  + V F  +I G C
Sbjct: 510 ELEKAIALYQSMRKKKVKADSVTFTILISGSC 541



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/397 (20%), Positives = 156/397 (39%), Gaps = 30/397 (7%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           L+SY R  + G+  E   ++    RK     + V +    +   S   + EA   F+ + 
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKP----NVVTYNALIDAYGSNGFLAEAVEIFRQME 452

Query: 89  N----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT---CAKSG 141
                P + +   L++ C+ SK       VL   Q  G+  +   Y + I +    A+  
Sbjct: 453 QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELE 512

Query: 142 KVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           K  A++++     VK D V F  LI+   +      A   L EM     P+  +      
Sbjct: 513 KAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKE------ 566

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
                   GQV  A  ++  +     +     YT  ++  + +  W  AC ++ +M   G
Sbjct: 567 --------GQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANG 618

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD +  SAL+      G+    F ++   + + I      +  +  AC+  + W++A+
Sbjct: 619 IEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAI 678

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           +L + M       ++   N ++       ++   M++   + + G+  N  TY+ILL   
Sbjct: 679 DLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHL 738

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
               +    + +L      G+ P+  M++ II    R
Sbjct: 739 LAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGER 775


>gi|255580313|ref|XP_002530985.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529437|gb|EEF31397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 753

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 142/301 (47%), Gaps = 14/301 (4%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSGKV- 143
           LVP+   S   ++ +V  ++++SE A Q  R V+ AGL K D   +  +I    ++ K+ 
Sbjct: 103 LVPHFDHS---LVYNVLHAARNSEHALQFFRWVERAGLFKNDRDTHMKIIEILGRASKLN 159

Query: 144 -------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                  D   + V+ D  +F  LI + G++G V  A  +  +MN     V+    +  A
Sbjct: 160 HARCILLDMPKKGVEWDEYMFVVLIESYGKAGIVQEAVKIFNKMNE--LGVERSIKSYDA 217

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L K     G+   A+ V+  +    I+ T   Y I +     +   E A   YDDM  +G
Sbjct: 218 LFKVILRRGRYMMAKRVFNKMLNDGIQPTRHTYNIMLWGFFLSLRLETAMRFYDDMKNRG 277

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD V  + +I+      K+E A ++  E K + I+  +ISY++++            L
Sbjct: 278 ISPDVVTYNTMINGFYRFKKMEEAEKLFVEMKGKNIAPTVISYTTMIKGYVAVDRVDDGL 337

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            L E MKS  +KP V T + L+  LCD  ++ +  ++L +M +  L P   +  + L++C
Sbjct: 338 RLLEEMKSFNIKPNVHTYSTLLPGLCDAWKMTEAKDILIEMVARHLAPKDNSIFLRLLSC 397

Query: 377 E 377
           +
Sbjct: 398 Q 398



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 6/243 (2%)

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSV 248
           DH  +  ++ A  N+   + A + ++ + +  + K   + +   I    +      A  +
Sbjct: 108 DHSLVYNVLHAARNS---EHALQFFRWVERAGLFKNDRDTHMKIIEILGRASKLNHARCI 164

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
             DM KKGV  DE     LI+  G AG V+ A +I  +    G+   I SY +L      
Sbjct: 165 LLDMPKKGVEWDEYMFVVLIESYGKAGIVQEAVKIFNKMNELGVERSIKSYDALFKVILR 224

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
              +  A  ++  M +  ++PT  T N ++       +L   M    DMK+ G+ P+ +T
Sbjct: 225 RGRYMMAKRVFNKMLNDGIQPTRHTYNIMLWGFFLSLRLETAMRFYDDMKNRGISPDVVT 284

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTLNEHVL 426
           Y+ ++    R   +E    L  + K   + P ++ +  +I   +   R +    L E + 
Sbjct: 285 YNTMINGFYRFKKMEEAEKLFVEMKGKNIAPTVISYTTMIKGYVAVDRVDDGLRLLEEMK 344

Query: 427 SFN 429
           SFN
Sbjct: 345 SFN 347



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 71/393 (18%), Positives = 153/393 (38%), Gaps = 25/393 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           + G + E + +   M   G+    K Y A F  + +  + +     F K++ +   PT  
Sbjct: 189 KAGIVQEAVKIFNKMNELGVERSIKSYDALFKVILRRGRYMMAKRVFNKMLNDGIQPTRH 248

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--------VDA 145
           T+N+++     S   E A +    ++  G+  D   Y T+I    +  K        V+ 
Sbjct: 249 TYNIMLWGFFLSLRLETAMRFYDDMKNRGISPDVVTYNTMINGFYRFKKMEEAEKLFVEM 308

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
             +N+ P  + +  +I        VD    +L EM +    + P+  T   L+    +A 
Sbjct: 309 KGKNIAPTVISYTTMIKGYVAVDRVDDGLRLLEEMKS--FNIKPNVHTYSTLLPGLCDAW 366

Query: 206 QVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           ++  A+++  +M+ ++       ++   ++C  + GD   A  V + M +  +  +    
Sbjct: 367 KMTEAKDILIEMVARHLAPKDNSIFLRLLSCQCKAGDLRAAEDVLNTMMRLHIPTEAGHY 426

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGI--------SVGIISYSSLMGA-CSNAKNWQKA 315
             LI+    A + + A + L +   + I         +   +Y+ ++   CS+ +  +  
Sbjct: 427 GVLIENFCKAEEYDRAVKYLDKLIEKEIILRPQSTLEIESNAYNPMIQYLCSHGQTGKAE 486

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           +   + MK     P     N LI             E+   M   G+  +   Y +++ +
Sbjct: 487 IFFRQLMKKGVQDPL--AFNNLICGHAKEGYPDSAFEIFKIMGKRGVPRDADAYRLIIES 544

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             RK +       L    EDG +P+  +F+ ++
Sbjct: 545 YLRKGEPADAKTALDGMLEDGHVPDPSVFRSVM 577



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 53/276 (19%), Positives = 108/276 (39%), Gaps = 29/276 (10%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL----STF 95
           R+ + + LLE+M+   +      Y      +C + K  +      ++V         S F
Sbjct: 332 RVDDGLRLLEEMKSFNIKPNVHTYSTLLPGLCDAWKMTEAKDILIEMVARHLAPKDNSIF 391

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAMFE 148
             L+S    + D   A  VL  +    +  +   Y  LI    K+ +       +D + E
Sbjct: 392 LRLLSCQCKAGDLRAAEDVLNTMMRLHIPTEAGHYGVLIENFCKAEEYDRAVKYLDKLIE 451

Query: 149 N---VKPDRVV------FNALIT---ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
               ++P   +      +N +I    + GQ+G  +  F  L +   +      D +    
Sbjct: 452 KEIILRPQSTLEIESNAYNPMIQYLCSHGQTGKAEIFFRQLMKKGVQ------DPLAFNN 505

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+   A  G  D A E++K++ K  +    + Y + I    + G+   A +  D M + G
Sbjct: 506 LICGHAKEGYPDSAFEIFKIMGKRGVPRDADAYRLIIESYLRKGEPADAKTALDGMLEDG 565

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
            +PD     ++++     G+V+ A  +++    +G+
Sbjct: 566 HVPDPSVFRSVMESLFEDGRVQTASRVMKSMVEKGV 601


>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 125/265 (47%), Gaps = 3/265 (1%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           E V+P+   +   +     +  V  A++ L  +    +P +  +    A++    + GQV
Sbjct: 242 EGVRPNAATYATYLYGLCHAKQVKSAWNFLQMLCQRGYPCN--NYCFNAVIHGFCHDGQV 299

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
            +A EV+  + K         Y+I ++   + GD      +  +M + G+ P+ V  S+L
Sbjct: 300 HKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSL 359

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           +     AG+VE AFE+ +  K+QG     I YS ++  C    + +   +L+  M     
Sbjct: 360 LHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNF 419

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P     ++LI A C   QL + +EV   M S G+CPN +T +IL+     +  +    +
Sbjct: 420 VPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFL 479

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMC 411
            L + ++ GV+P+L  ++ II G+C
Sbjct: 480 FLDKVRQFGVVPSLCTYRVIIHGLC 504



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 74/347 (21%), Positives = 159/347 (45%), Gaps = 12/347 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P  +T+   +     +K  + A+  L+++ + G   +   +  +I      G+V     +
Sbjct: 246 PNAATYATYLYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEV 305

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F+ +K     PD   ++ L+    + G V   + +L EM    + + P+ ++  +L+   
Sbjct: 306 FDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMAR--NGITPNLVSYSSLLHGL 363

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AG+V+ A E++K +     K    VY+I ++ C Q  D E    +++DM     +PD 
Sbjct: 364 CRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDA 423

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              S+LI       +++ A E+ +   + GI   +++ + L+   SN     +A    + 
Sbjct: 424 YNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDK 483

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           ++   + P++ T   +I  LC  ++      + +DM   G  P+T+ YSI++    +  D
Sbjct: 484 VRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSIIIDGFVKALD 543

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
           ++    L  +  ++G  PN+  +  +I G+C   +  +  TL +H++
Sbjct: 544 LQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMI 590



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 93/456 (20%), Positives = 189/456 (41%), Gaps = 65/456 (14%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
             G++ + I++ + M++ G +     Y      +CK    +   +   ++  N   P L 
Sbjct: 295 HDGQVHKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLV 354

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DA 145
           +++ L+     +   E AF++ + +++ G K D  +Y+ ++  C +   +        D 
Sbjct: 355 SYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDM 414

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           +  N  PD   +++LI A  +   +  A +V   M ++   + P+ +T   L+   +N G
Sbjct: 415 VHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSD--GICPNVVTCTILVHGFSNEG 472

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +  A      + ++ +  +   Y + I+   +         ++ DM K+G +PD V  S
Sbjct: 473 LIGEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYS 532

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            +ID     G V+A                               + Q+A  LY  M   
Sbjct: 533 IIID-----GFVKAL------------------------------DLQEAFRLYYKMVDE 557

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
             KP + T  +LI  LC  D+LP+ M +   M   GL P+ I Y+ L+    ++ +++  
Sbjct: 558 GTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAA 617

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSL- 442
           L +  + + +G+  +  ++ C+IG  S+    + A+   E ++  N G       +T L 
Sbjct: 618 LEIFREMETEGLSADSFVYTCLIGGFSKVLAMDGAQLFMEEMM--NKGLTPTVVTYTDLI 675

Query: 443 -----------ALMVYREAIVAGTIPTVEVVSKVLG 467
                      A+ +Y   + AG  P  + +S +LG
Sbjct: 676 VGYFKIGDEKKAMAMYNSMLQAGIAPDAK-LSCILG 710



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 75/162 (46%)

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           +GV P+    +  +    HA +V++A+  LQ    +G       +++++    +     K
Sbjct: 242 EGVRPNAATYATYLYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHK 301

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A+E+++ MK     P V + + L+  LC    +     +L +M   G+ PN ++YS LL 
Sbjct: 302 AIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLH 361

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
              R   VE+   L  + K+ G   + +++  ++  C +  +
Sbjct: 362 GLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLD 403



 Score = 39.3 bits (90), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 263 FLSALIDFAGHAGKVEAAFEIL-QEAKNQGISVGIIS-YSSLMGACSNAKNWQKALELYE 320
            + +++D  G+AG     FE++   A N G S+ +   Y++++        ++ AL  Y 
Sbjct: 110 LIQSVVDHCGNAGP--ELFELVPMLASNLGGSMTLPQVYATVIRVFVELSMFEDALVTYV 167

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             K + ++  V   N L+  L +G+Q+     +  DMKS G  PN  +YS+L+
Sbjct: 168 EAKKVGVELQVC--NFLLKRLVEGNQIMYARSLFDDMKSSGPSPNVYSYSVLM 218


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 164/387 (42%), Gaps = 12/387 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           L +  + SE + L+E M  KG       Y A    +CK  +   A+    +  K      
Sbjct: 190 LFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEAD 249

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--------V 143
           +  +N ++      K  + AF +   ++  G+K D   Y  LI+     G+         
Sbjct: 250 VVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLS 309

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           D + +N+ PD V FNALI A  + G +  A  +  EM    H   PD +    L+K    
Sbjct: 310 DMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCF-PDVVAYNTLIKGFCK 368

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             +V+   EV++ + +  + G    YT  I+   Q  D + A  V+  M   GV PD + 
Sbjct: 369 YKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMT 428

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + L+D   + G VE A  + +  + + + + I++Y++++ A   A   +   +L+  + 
Sbjct: 429 YNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLS 488

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              +KP V T   +++  C      +   +  +MK  G  PN+ TY+ L+ A  R  D  
Sbjct: 489 LKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEA 548

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGM 410
               L+ + +  G   +   F  +  M
Sbjct: 549 ASAELIKEMRSCGFAGDASTFGLVTNM 575



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 175/426 (41%), Gaps = 52/426 (12%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF--RFFKLVPNPTLS 93
           +  +    I L E M+  G+      Y       C+ SQ ++  A   +  KL   P++ 
Sbjct: 87  KMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIV 146

Query: 94  TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEN 149
           T N L++  C  ++ SE    V ++V E G + D   +TTL+    +  K     A+ E 
Sbjct: 147 TLNSLLNGFCHGNRISEAVALVDQMV-EMGYQPDTVTFTTLVHGLFQHNKASEAVALVER 205

Query: 150 V-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           +     +PD V + A+I    + G  D A ++L +M  E   ++ D +    ++      
Sbjct: 206 MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKM--EKGKIEADVVIYNTIIDGLCKY 263

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
             +D A +++  +    IK     Y   I+C    G W  A  +  DM +K + PD VF 
Sbjct: 264 KHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFF 323

Query: 265 SALIDFAGHAGK------------------------------------VEAAFEILQEAK 288
           +ALID     GK                                    VE   E+ +E  
Sbjct: 324 NALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMS 383

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +G+    ++Y++L+     A++   A  +++ M S  + P + T N L+  LC+   + 
Sbjct: 384 QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVE 443

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             + V   M+   +  + +TY+ ++ A  +   VE G  L       GV PN+V +  ++
Sbjct: 444 TALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 503

Query: 409 -GMCSR 413
            G C +
Sbjct: 504 SGFCRK 509



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 147/370 (39%), Gaps = 49/370 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
           N L ++G     ++LL  ME KG ++ D V Y+     +CK  K + +AF  F  +    
Sbjct: 223 NGLCKRGEPDLALNLLNKME-KGKIEADVVIYNTIIDGLCK-YKHMDDAFDLFNKMETKG 280

Query: 90  --PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
             P + T+N L+S   +      A ++L  + E  +  D   +  LI    K GK+    
Sbjct: 281 IKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAE 340

Query: 144 ---DAMFENVK--PDRVVFNALITACGQSGAVDRAFDVLAEM------------------ 180
              D M ++    PD V +N LI    +   V+   +V  EM                  
Sbjct: 341 KLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHG 400

Query: 181 --------NAEV-------HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
                   NA++         V PD +T   L+    N G V+ A  V++ + K ++K  
Sbjct: 401 FFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLD 460

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
              YT  I    + G  E    ++  ++ KGV P+ V  + ++      G  E A  +  
Sbjct: 461 IVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFV 520

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           E K  G      +Y++L+ A     +   + EL + M+S       ST   +   L DG 
Sbjct: 521 EMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNMLHDGR 580

Query: 346 QLPKTMEVLS 355
                +++LS
Sbjct: 581 LDKSFLDMLS 590



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 79/170 (46%), Gaps = 1/170 (0%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  ++ DM K    P  V  S L+       K +    + ++ +N GIS  + +YS  + 
Sbjct: 59  AIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFIN 118

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                     AL +   M  +   P++ T+N+L+   C G+++ + + ++  M  +G  P
Sbjct: 119 YFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQP 178

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           +T+T++ L+    + +     + L+ +    G  P+LV +  +I G+C R
Sbjct: 179 DTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 228


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 186/412 (45%), Gaps = 21/412 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------LVP 88
           L ++G I    DL+  +++ G+     VY+A   ++CK  K + EA   F       L P
Sbjct: 330 LRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGK-LDEAESLFNNMGHKGLFP 388

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
           N    T+++L+         + A   L  + E G+KA    Y++LI+   K GK+     
Sbjct: 389 NDV--TYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKS 446

Query: 144 --DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             D M  N +KP+ V++ +LI+   + G +  AF +  EM  +   + P+  T  AL+  
Sbjct: 447 LFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGK--GISPNTYTFTALISG 504

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             +A ++  A +++  + ++N+      Y + I    + G+   A  + D+M +KG++PD
Sbjct: 505 LCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPD 564

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
                 LI      G+V  A E + + + +   +  + +S+L+           AL+   
Sbjct: 565 TYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACR 624

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    +   +   + LI  +         +++L  M   GL P+ + Y+ ++ A  +  
Sbjct: 625 EMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAG 684

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNS 430
           ++++   L      +G +PN+V +  +I G+C     +KA  L   +L+ NS
Sbjct: 685 NLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNS 736



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/400 (22%), Positives = 175/400 (43%), Gaps = 15/400 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N LIR  +    + L +++   GL     VY A   ++C+ +  I+      ++     +
Sbjct: 188 NGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCD 247

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
            +++T+N+ +     ++    A ++  L+   GL+AD   Y TL+    K  + +A    
Sbjct: 248 LSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEM 307

Query: 146 MFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           M E ++    P     + L+    + G +  AFD++ ++      V P      AL+ + 
Sbjct: 308 MNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKK--FGVAPSLFVYNALINSM 365

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G++D A  ++  +    +      Y+I I+   + G  + A      MT+ G+    
Sbjct: 366 CKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATV 425

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              S+LI      GK+ AA  +  E    G+   ++ Y+SL+           A  LY  
Sbjct: 426 YPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHE 485

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    + P   T  ALI+ LC  +++ +  ++  +M    + PN +TY++L+    ++ +
Sbjct: 486 MTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGN 545

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKAR 419
                 LL +  E G++P+   ++ +I G+CS  R  +AR
Sbjct: 546 TVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAR 585



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 172/389 (44%), Gaps = 20/389 (5%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF------KLVPNP 90
           ++G +     L  +M  KG+      + A    +C + + + EA + F       ++PN 
Sbjct: 472 KEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANR-MAEANKLFGEMVEWNVIPNE 530

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
              T+N+L+       ++  AF++L  + E GL  D   Y  LI+    +G+V       
Sbjct: 531 V--TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFM 588

Query: 144 -DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
            D   E  K + + F+AL+    + G +D A D   EM      V  D +    L+    
Sbjct: 589 NDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGR--GVAMDLVCYSVLIYGIL 646

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
                    ++ K +H   ++    +YT  I+  ++ G+ + A  ++D M  +G +P+ V
Sbjct: 647 RQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVV 706

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +ALI+     G ++ A  + +E           +Y+  +   ++  N +KA++L++ +
Sbjct: 707 TYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVL 766

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               L  TV T N LI   C   ++ +  EVL +M   G+ P+ I+YS ++    R+ D+
Sbjct: 767 LEGFLANTV-TYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDL 825

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           +  + L       GV P+ V +  +I  C
Sbjct: 826 KEAIKLWESMLNRGVNPDTVAYNFLIYGC 854



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 154/359 (42%), Gaps = 20/359 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    ++G      +LL++M  KGL+     Y      +C + + + EA  F   
Sbjct: 532 TYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGR-VSEAREFMND 590

Query: 87  VPNPTLSTFNMLMSVCASSKDSEG----AFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +         M  S        EG    A    R +   G+  D   Y+ LI    +   
Sbjct: 591 LQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQD 650

Query: 143 VDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
             ++         + ++PD V++  +I A  ++G +  AF +   M +E     P+ +T 
Sbjct: 651 RRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSE--GCLPNVVTY 708

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            AL+      G +D+A  + + +   N       Y   ++  +  G+ E A  ++D + +
Sbjct: 709 TALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE 768

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G + + V  + LI      G+++ A E+L    + GIS   ISYS+++       + ++
Sbjct: 769 -GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKE 827

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           A++L+E M +  + P     N LI   C   +L K  E+  DM   G+ PN  TY+ L+
Sbjct: 828 AIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLI 886



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 171/438 (39%), Gaps = 54/438 (12%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AI 77
           V+  L  YN LI    + G++ E   L  +M  KGL   D  Y     + CK  K   A+
Sbjct: 351 VAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVAL 410

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
               +  ++    T+  ++ L+S          A  +   +   GLK +  +YT+LI+  
Sbjct: 411 HFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGY 470

Query: 138 AKSGKVDAMFE-------------------------------------------NVKPDR 154
            K G++   F                                            NV P+ 
Sbjct: 471 CKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNE 530

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           V +N LI    + G   RAF++L EM  +   + PD  T   L+    + G+V  ARE  
Sbjct: 531 VTYNVLIEGHCKEGNTVRAFELLDEMVEK--GLVPDTYTYRPLISGLCSTGRVSEAREFM 588

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             +     K     ++  ++   + G  + A     +M  +GV  D V  S LI      
Sbjct: 589 NDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQ 648

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
               +  ++L++  +QG+    + Y++++ A + A N + A  L++ M S    P V T 
Sbjct: 649 QDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTY 708

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            ALI  LC    + K   +  +M +    PN  TY+  L     + ++E  + L     E
Sbjct: 709 TALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLE 768

Query: 395 DGVIPNLVMFKCII-GMC 411
            G + N V +  +I G C
Sbjct: 769 -GFLANTVTYNILIRGFC 785



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 141/321 (43%), Gaps = 18/321 (5%)

Query: 35  LIRQGRISECIDLLEDM--ERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPN 89
           L   GR+SE  + + D+  E++ L +M   + A     CK  +   A+            
Sbjct: 575 LCSTGRVSEAREFMNDLQGEQQKLNEM--CFSALLHGYCKEGRLDDALDACREMLGRGVA 632

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
             L  +++L+      +D      +L+ + + GL+ D  LYTT+I   AK+G +   F  
Sbjct: 633 MDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGL 692

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E   P+ V + ALI    + G +D+A  +  EM A      P+  T    +   
Sbjct: 693 WDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSL--PNQNTYACFLDYL 750

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            + G +++A +++ ++ +  +  T   Y I I    + G  + A  V  +M   G+ PD 
Sbjct: 751 TSEGNIEKAIQLHDVLLEGFLANTV-TYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDC 809

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  S +I      G ++ A ++ +   N+G++   ++Y+ L+  C       KA EL + 
Sbjct: 810 ISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDD 869

Query: 322 MKSIKLKPTVSTMNALITALC 342
           M    +KP  +T N+LI   C
Sbjct: 870 MMRRGVKPNRATYNSLIHGTC 890



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 31/149 (20%), Positives = 72/149 (48%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M   G++P    LS +++      +   A  +  E  + G+   +  Y++++ +    K+
Sbjct: 171 MMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKD 230

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           + +A E+   M+S     +V+T N  I  LC   ++ + +E+ + +   GL  +  TY  
Sbjct: 231 FIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCT 290

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           L++   + ++ E G  ++++  E G +P+
Sbjct: 291 LVLGLCKVEEFEAGEEMMNEMIEFGFVPS 319


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/463 (22%), Positives = 184/463 (39%), Gaps = 63/463 (13%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           + G++   +++L+ MER G       Y++  + + K +K  K      K+  +   P + 
Sbjct: 474 KSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVI 533

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-----E 148
           T+  L+       D + AF++  ++++ GLK D   Y  L     K+G+ +  +     +
Sbjct: 534 TYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRK 593

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            V   +V +  LI    ++G  D A  ++  M  E     PD  T   L+ A     +++
Sbjct: 594 GVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDE--GCTPDSYTYSVLLHALCKQKRLN 651

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT--------------- 253
            A  +   +    IK T   YTI I+   + G  + A  +Y++MT               
Sbjct: 652 EALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFI 711

Query: 254 --------------------KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
                               ++GV PD V  + LID  GH G ++ AF  L+        
Sbjct: 712 NSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCE 771

Query: 294 VGIISYSSLMG-----------ACSNAKNWQK-----ALELYEHMKSIKLKPTVSTMNAL 337
               +Y  L+            +   +  W         +L E M    L PTV+T ++L
Sbjct: 772 PNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSL 831

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           I   C   +L +   +L  M   GL PN   Y++L+  C      E  L  +S   E G 
Sbjct: 832 IAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGF 891

Query: 398 IPNLVMFK-CIIGMCSR-RYEKARTLNEHVLSFNSGRPQIENK 438
            P L  ++  ++G+C+   +EK ++L   +L       ++  K
Sbjct: 892 QPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWK 934



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 116/532 (21%), Positives = 221/532 (41%), Gaps = 79/532 (14%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---------KAI 77
           +YN +I    + GR+++ + + E ME+ G    D  Y+   + +C  +          A+
Sbjct: 325 TYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAV 384

Query: 78  KEAFRFFKLVPNPTLSTF-NMLMSVCASSKDSEG-------------------------- 110
           KE F        PT+ TF N++   C + K  +                           
Sbjct: 385 KEGF-------TPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSL 437

Query: 111 --------AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK--------PDR 154
                   A ++L  +   GL  +   YT++I    KSGKVD   E +K        P+ 
Sbjct: 438 IKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNA 497

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
             +N+L+    +   + +A  +L +M  +   + P+ IT   L++   +    D A  ++
Sbjct: 498 WTYNSLMYGLVKDKKLHKAMALLTKMQKD--GIIPNVITYTTLLQGQCDEHDFDNAFRLF 555

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           +M+ +  +K     Y +  +   + G  E A   Y  + +KGV   +V+ + LID    A
Sbjct: 556 EMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFSKA 612

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G  + A  +++   ++G +    +YS L+ A    K   +AL + + M    +K T+   
Sbjct: 613 GNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAY 672

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
             LI  +    +      + ++M S G  P+  TY++ + +  ++  +E    L+ + + 
Sbjct: 673 TILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMER 732

Query: 395 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAG 454
           +GV P++V +  +I  C       R  +   L    G     N WT   L+ +   ++ G
Sbjct: 733 EGVAPDVVTYNILIDGCGHMGYIDRAFS--TLKRMVGASCEPNYWTYCLLLKH---LLKG 787

Query: 455 TIPTVEVV--SKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
            +  V  V  S +   ++L     + ER+V++ G++      S   SLI GF
Sbjct: 788 NLAYVRSVDTSGMWNLIELDITWQLLERMVKH-GLNPTVTTYS---SLIAGF 835



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 140/356 (39%), Gaps = 34/356 (9%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVC 102
           L+E M  +G       Y      +CK QK + EA      +       T+  + +L+   
Sbjct: 621 LIERMIDEGCTPDSYTYSVLLHALCK-QKRLNEALPILDQMSLRGIKCTIFAYTILIDEM 679

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--------FENVKPDR 154
                 + A ++   +  +G K     YT  I +  K G+++           E V PD 
Sbjct: 680 LREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDV 739

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           V +N LI  CG  G +DRAF  L  M       +P++ T   L+K     G +   R V 
Sbjct: 740 VTYNILIDGCGHMGYIDRAFSTLKRMVGA--SCEPNYWTYCLLLKHLLK-GNLAYVRSV- 795

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
                 +  G   +  + I        W+    + + M K G+ P     S+LI     A
Sbjct: 796 ------DTSGMWNLIELDIT-------WQ----LLERMVKHGLNPTVTTYSSLIAGFCKA 838

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G++E A  +L     +G+S     Y+ L+  C + K ++KAL     M     +P + + 
Sbjct: 839 GRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESY 898

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
             L+  LC+     K   +  D+  LG   + + + IL     +   V++   +LS
Sbjct: 899 RLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLS 954



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 136/319 (42%), Gaps = 11/319 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--- 146
           P   T+N ++       D   A +  RL+ E GL+ +      L+    ++G++      
Sbjct: 181 PDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWL 240

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                    + +   +  LI     +  V +A  +   M  +     P+      L+   
Sbjct: 241 FLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRD--GCSPNVRAFTFLISGL 298

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             +G+V  AR ++  + +  +  +   Y   I   S+ G    A  + + M K G  PD+
Sbjct: 299 CKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDD 358

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LI +     K E A E+L  A  +G +  ++++++L+     A+ +  AL +   
Sbjct: 359 WTYNTLI-YGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNK 417

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S K K  +     LI +L   D+L +  E+L+++ + GL PN ITY+ ++    +   
Sbjct: 418 MMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGK 477

Query: 382 VEVGLMLLSQAKEDGVIPN 400
           V++ L +L   + DG  PN
Sbjct: 478 VDIALEVLKMMERDGCQPN 496



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 130/320 (40%), Gaps = 42/320 (13%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAM 146
           ++ +L+     +K    A  +  +++  G   + + +T LI+   KSG+V       DAM
Sbjct: 255 SYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 314

Query: 147 FEN-VKPDRVVFNALITACGQSGAVDRAFDV--LAEMNAEVHPVD--------------- 188
            +N V P  + +NA+I    + G ++ A  +  L E N   HP D               
Sbjct: 315 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNG-CHPDDWTYNTLIYGLCDQKT 373

Query: 189 ----------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
                           P  +T   L+     A + D A  +   +     K   +V+   
Sbjct: 374 EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKL 433

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           IN   +    + A  + ++++  G++P+ +  +++ID    +GKV+ A E+L+  +  G 
Sbjct: 434 INSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGC 493

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
                +Y+SLM      K   KA+ L   M+   + P V T   L+   CD         
Sbjct: 494 QPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFR 553

Query: 353 VLSDMKSLGLCPNTITYSIL 372
           +   M+  GL P+   Y++L
Sbjct: 554 LFEMMEQNGLKPDEHAYAVL 573



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 128/321 (39%), Gaps = 23/321 (7%)

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
           +P+ Y  A+   ++    E+   VY  + + G++PD V  + +I      G +  A    
Sbjct: 147 SPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYF 206

Query: 285 QEAKNQGISVGIISYSSL-MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           +     G+     + ++L +G C   +  +KA  L+  M  +  +    +   LI  LCD
Sbjct: 207 RLLLEGGLEPETFTCNALVLGYCRTGE-LRKACWLFLMMPLMGCQRNEYSYTILIQGLCD 265

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
              + K + +   MK  G  PN   ++ L+    +   V    +L     ++GV+P+++ 
Sbjct: 266 AKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMT 325

Query: 404 FKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALM-------------VYR 448
           +  +I   S+  R   A  + E ++  N   P   + WT   L+             +  
Sbjct: 326 YNAMIVGYSKLGRMNDALKIKE-LMEKNGCHP---DDWTYNTLIYGLCDQKTEEAEELLN 381

Query: 449 EAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD 508
            A+  G  PTV   + ++    +    D   R+   +  S   L       LI+   + D
Sbjct: 382 NAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKD 441

Query: 509 --PRAFSLLEEAASFGIVPCV 527
               A  LL E ++ G+VP V
Sbjct: 442 RLKEAKELLNEISANGLVPNV 462


>gi|224137224|ref|XP_002322504.1| predicted protein [Populus trichocarpa]
 gi|222867134|gb|EEF04265.1| predicted protein [Populus trichocarpa]
          Length = 647

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 145/302 (48%), Gaps = 11/302 (3%)

Query: 133 LITTCAKSGKVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
           ++  C    KV+ +F+      VKPD V F+ +I+        D+A +   +M +    +
Sbjct: 132 VLRKCRDLNKVEKLFDEMIERAVKPDNVTFSTIISCARLCNLADKAVEWFEKMPS--FGL 189

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           DPD +T   ++ +    G V++A  +Y        +     ++  I     +G+++   +
Sbjct: 190 DPDDVTFSTMIDSYGRVGNVEKALSLYDRARTEKWRLDTTTFSTLIRIYKDSGNFDCCLN 249

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           VY++M   GV P+ V  + L+D  G A +   A +  Q+  + G+S    +Y++L+ A  
Sbjct: 250 VYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFYQDIIDSGLSPSYATYAALLRAYG 309

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            A+  +  +++Y+ MK  +L   V   N ++    D   + + +E+  DMK+ G+ P++ 
Sbjct: 310 RARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADLGFVDEAIEIFEDMKNSGISPDSW 369

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLS 427
           T+S ++        V     +L++  E G  PN+ +   +I  C   Y KA+ +++ V +
Sbjct: 370 TFSSMITMSSCCGKVSEAENMLNEMFEAGFQPNIFVLTSLI-QC---YGKAQRIDDVVKT 425

Query: 428 FN 429
           FN
Sbjct: 426 FN 427



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 142/316 (44%), Gaps = 15/316 (4%)

Query: 80  AFRFFK--LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT- 136
           A +FF+  L  N  +  +N+ M V    +D     ++   + E  +K D   ++T+I+  
Sbjct: 109 ALKFFRERLEFNREVVVYNVTMKVLRKCRDLNKVEKLFDEMIERAVKPDNVTFSTIISCA 168

Query: 137 --CAKSGKVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
             C  + K    FE      + PD V F+ +I + G+ G V++A  +      E   +D 
Sbjct: 169 RLCNLADKAVEWFEKMPSFGLDPDDVTFSTMIDSYGRVGNVEKALSLYDRARTEKWRLDT 228

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
              T   L++   ++G  D    VY+ +    +K    +Y   ++   +      A   Y
Sbjct: 229 --TTFSTLIRIYKDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFY 286

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
            D+   G+ P     +AL+   G A   E   +I +E K + +S+ ++ Y++++  C++ 
Sbjct: 287 QDIIDSGLSPSYATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADL 346

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
               +A+E++E MK+  + P   T +++IT      ++ +   +L++M   G  PN    
Sbjct: 347 GFVDEAIEIFEDMKNSGISPDSWTFSSMITMSSCCGKVSEAENMLNEMFEAGFQPNIFVL 406

Query: 370 SILLVA---CERKDDV 382
           + L+      +R DDV
Sbjct: 407 TSLIQCYGKAQRIDDV 422



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 107/234 (45%), Gaps = 7/234 (2%)

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
           E N EV       +     MK       +++  +++  + +  +K     ++  I+C   
Sbjct: 118 EFNREV-------VVYNVTMKVLRKCRDLNKVEKLFDEMIERAVKPDNVTFSTIISCARL 170

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
               + A   ++ M   G+ PD+V  S +ID  G  G VE A  +   A+ +   +   +
Sbjct: 171 CNLADKAVEWFEKMPSFGLDPDDVTFSTMIDSYGRVGNVEKALSLYDRARTEKWRLDTTT 230

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           +S+L+    ++ N+   L +YE MK++ +KP +   N L+ A+    +  +  +   D+ 
Sbjct: 231 FSTLIRIYKDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFYQDII 290

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
             GL P+  TY+ LL A  R    E  + +  + KE  +  N++++  I+ MC+
Sbjct: 291 DSGLSPSYATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCA 344



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 112/263 (42%), Gaps = 14/263 (5%)

Query: 79  EAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +A  +F+ +P    +P   TF+ ++       + E A  +    +    + D   ++TLI
Sbjct: 176 KAVEWFEKMPSFGLDPDDVTFSTMIDSYGRVGNVEKALSLYDRARTEKWRLDTTTFSTLI 235

Query: 135 TTCAKSGKVDA---MFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
                SG  D    ++E      VKP+ V++N L+ A G++    +A     ++      
Sbjct: 236 RIYKDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAMGRARRPWQAKKFYQDIIDS--G 293

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + P + T  AL++A   A   +   ++YK + +  +     +Y   +  C+  G  + A 
Sbjct: 294 LSPSYATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADLGFVDEAI 353

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +++DM   G+ PD    S++I  +   GKV  A  +L E    G    I   +SL+   
Sbjct: 354 EIFEDMKNSGISPDSWTFSSMITMSSCCGKVSEAENMLNEMFEAGFQPNIFVLTSLIQCY 413

Query: 307 SNAKNWQKALELYEHMKSIKLKP 329
             A+     ++ +  +  + + P
Sbjct: 414 GKAQRIDDVVKTFNRLYELLITP 436



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 125/307 (40%), Gaps = 10/307 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           P   TF+ ++S       ++ A +    +   GL  D   ++T+I +  + G V+     
Sbjct: 156 PDNVTFSTIISCARLCNLADKAVEWFEKMPSFGLDPDDVTFSTMIDSYGRVGNVEKALSL 215

Query: 145 ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
              A  E  + D   F+ LI     SG  D   +V  EM A    V P+ +    L+ A 
Sbjct: 216 YDRARTEKWRLDTTTFSTLIRIYKDSGNFDCCLNVYEEMKA--LGVKPNLVIYNTLLDAM 273

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             A +  +A++ Y+ I    +  +   Y   +    +    E    +Y +M +K +  + 
Sbjct: 274 GRARRPWQAKKFYQDIIDSGLSPSYATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNV 333

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + ++      G V+ A EI ++ KN GIS    ++SS++   S      +A  +   
Sbjct: 334 LLYNTILAMCADLGFVDEAIEIFEDMKNSGISPDSWTFSSMITMSSCCGKVSEAENMLNE 393

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M     +P +  + +LI       ++   ++  + +  L + P+      LL    +  +
Sbjct: 394 MFEAGFQPNIFVLTSLIQCYGKAQRIDDVVKTFNRLYELLITPDDRFCGCLLNVMTQTPN 453

Query: 382 VEVGLML 388
            E+G ++
Sbjct: 454 EELGKLV 460



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 74/368 (20%), Positives = 153/368 (41%), Gaps = 66/368 (17%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +++ LIR     G    C+++ E+M+  G+     +Y+     + ++++   +A +F++ 
Sbjct: 230 TFSTLIRIYKDSGNFDCCLNVYEEMKALGVKPNLVIYNTLLDAMGRARRPW-QAKKFYQD 288

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + +    P+ +T+  L+     ++  E   ++ + ++E  L  +  LY T++  CA  G 
Sbjct: 289 IIDSGLSPSYATYAALLRAYGRARYGEDTIKIYKEMKEKELSLNVLLYNTILAMCADLGF 348

Query: 143 VDA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           VD    +FE++K     PD   F+++IT     G V  A ++L EM        P+   +
Sbjct: 349 VDEAIEIFEDMKNSGISPDSWTFSSMITMSSCCGKVSEAENMLNEMFEA--GFQPNIFVL 406

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF---------- 244
            +L++    A ++D   + +  +++  I          +N  +QT + E           
Sbjct: 407 TSLIQCYGKAQRIDDVVKTFNRLYELLITPDDRFCGCLLNVMTQTPNEELGKLVDCVERA 466

Query: 245 ------------------------ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
                                   A  ++D+++ +     + + + LID       +E A
Sbjct: 467 NPKLGHVVKLLVEEQGNEGNFKKEAADLFDNISTE---VKKAYCNCLIDLCVKLNMLERA 523

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
            E+L    + G+++GI  Y+ +    S     Q +L L        L      +N L  A
Sbjct: 524 CELL----DHGLTLGI--YTDIQSKTST----QWSLNLKSLSSGAALTALHVWINDLSKA 573

Query: 341 LCDGDQLP 348
           L  G+QLP
Sbjct: 574 LEAGEQLP 581


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 104/463 (22%), Positives = 181/463 (39%), Gaps = 63/463 (13%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           + G++   +++L+ MER G       Y++  + + K +K  K      K+  +   P + 
Sbjct: 474 KSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVI 533

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-----E 148
           T+  L+       D + AF++  ++++ GLK D   Y  L     K+G+ +  +     +
Sbjct: 534 TYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRK 593

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA---- 204
            V   +V +  LI    ++G  D A  ++  M  E     PD  T   L+ A        
Sbjct: 594 GVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDE--GCTPDSYTYSVLLHALCKQKRLN 651

Query: 205 -------------------------------GQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
                                          G+ D A+ +Y  +     K +   YT+ I
Sbjct: 652 EALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFI 711

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           N   + G  E A  +   M ++GV PD V  + LID  GH G ++ AF  L+        
Sbjct: 712 NSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCE 771

Query: 294 VGIISYSSLMG-----------ACSNAKNWQK-----ALELYEHMKSIKLKPTVSTMNAL 337
               +Y  L+            +   +  W         +L E M    L PTV+T ++L
Sbjct: 772 PNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSL 831

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           I   C   +L +   +L  M   GL PN   Y++L+  C      E  L  +S   E G 
Sbjct: 832 IAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGF 891

Query: 398 IPNLVMFK-CIIGMCSR-RYEKARTLNEHVLSFNSGRPQIENK 438
            P L  ++  ++G+C+   +EK ++L   +L       ++  K
Sbjct: 892 QPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWK 934



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 116/532 (21%), Positives = 221/532 (41%), Gaps = 79/532 (14%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---------KAI 77
           +YN +I    + GR+++ + + E ME+ G    D  Y+   + +C  +          A+
Sbjct: 325 TYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAV 384

Query: 78  KEAFRFFKLVPNPTLSTF-NMLMSVCASSKDSEG-------------------------- 110
           KE F        PT+ TF N++   C + K  +                           
Sbjct: 385 KEGF-------TPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSL 437

Query: 111 --------AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK--------PDR 154
                   A ++L  +   GL  +   YT++I    KSGKVD   E +K        P+ 
Sbjct: 438 IKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNA 497

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
             +N+L+    +   + +A  +L +M  +   + P+ IT   L++   +    D A  ++
Sbjct: 498 WTYNSLMYGLVKDKKLHKAMALLTKMQKD--GIIPNVITYTTLLQGQCDEHDFDNAFRLF 555

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           +M+ +  +K     Y +  +   + G  E A   Y  + +KGV   +V+ + LID    A
Sbjct: 556 EMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFSKA 612

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G  + A  +++   ++G +    +YS L+ A    K   +AL + + M    +K T+   
Sbjct: 613 GNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAY 672

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
             LI  +    +      + ++M S G  P+  TY++ + +  ++  +E    L+ + + 
Sbjct: 673 TILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMER 732

Query: 395 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAG 454
           +GV P++V +  +I  C       R  +   L    G     N WT   L+ +   ++ G
Sbjct: 733 EGVAPDVVTYNILIDGCGHMGYIDRAFS--TLKRMVGASCEPNYWTYCLLLKH---LLKG 787

Query: 455 TIPTVEVV--SKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
            +  V  V  S +   ++L     + ER+V++ G++      S   SLI GF
Sbjct: 788 NLAYVRSVDTSGMWNLIELDITWQLLERMVKH-GLNPTVTTYS---SLIAGF 835



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 140/356 (39%), Gaps = 34/356 (9%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVC 102
           L+E M  +G       Y      +CK QK + EA      +       T+  + +L+   
Sbjct: 621 LIERMIDEGCTPDSYTYSVLLHALCK-QKRLNEALPILDQMSLRGIKCTIFAYTILIDEM 679

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--------FENVKPDR 154
                 + A ++   +  +G K     YT  I +  K G+++           E V PD 
Sbjct: 680 LREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDV 739

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           V +N LI  CG  G +DRAF  L  M       +P++ T   L+K     G +   R V 
Sbjct: 740 VTYNILIDGCGHMGYIDRAFSTLKRMVGA--SCEPNYWTYCLLLKHLLK-GNLAYVRSV- 795

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
                 +  G   +  + I        W+    + + M K G+ P     S+LI     A
Sbjct: 796 ------DTSGMWNLIELDIT-------WQ----LLERMVKHGLNPTVTTYSSLIAGFCKA 838

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G++E A  +L     +G+S     Y+ L+  C + K ++KAL     M     +P + + 
Sbjct: 839 GRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESY 898

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
             L+  LC+     K   +  D+  LG   + + + IL     +   V++   +LS
Sbjct: 899 RLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVDICFQMLS 954



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 136/319 (42%), Gaps = 11/319 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--- 146
           P   T+N ++       D   A +  RL+ E GL+ +      L+    ++G++      
Sbjct: 181 PDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWL 240

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                    + +   +  LI    ++  V  A  +   M  +     P+      L+   
Sbjct: 241 FLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRD--GCSPNVRAFTFLISGL 298

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             +G+V  AR ++  + +  +  +   Y   I   S+ G    A  + + M K G  PD+
Sbjct: 299 CKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDD 358

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LI +     K E A E+L  A  +G +  ++++++L+     A+ +  AL +   
Sbjct: 359 WTYNTLI-YGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNK 417

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S K K  +     LI +L   D+L +  E+L+++ + GL PN ITY+ ++    +   
Sbjct: 418 MMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGK 477

Query: 382 VEVGLMLLSQAKEDGVIPN 400
           V++ L +L   + DG  PN
Sbjct: 478 VDIALEVLKMMERDGCQPN 496



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 130/320 (40%), Gaps = 42/320 (13%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAM 146
           ++ +L+     +K    A  +  +++  G   + + +T LI+   KSG+V       DAM
Sbjct: 255 SYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 314

Query: 147 FEN-VKPDRVVFNALITACGQSGAVDRAFDV--LAEMNAEVHPVD--------------- 188
            +N V P  + +NA+I    + G ++ A  +  L E N   HP D               
Sbjct: 315 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNG-CHPDDWTYNTLIYGLCDQKT 373

Query: 189 ----------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
                           P  +T   L+     A + D A  +   +     K   +V+   
Sbjct: 374 EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKL 433

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           IN   +    + A  + ++++  G++P+ +  +++ID    +GKV+ A E+L+  +  G 
Sbjct: 434 INSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGC 493

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
                +Y+SLM      K   KA+ L   M+   + P V T   L+   CD         
Sbjct: 494 QPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFR 553

Query: 353 VLSDMKSLGLCPNTITYSIL 372
           +   M+  GL P+   Y++L
Sbjct: 554 LFEMMEQNGLKPDEHAYAVL 573



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 66/321 (20%), Positives = 128/321 (39%), Gaps = 23/321 (7%)

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
           +P+ Y  A+   ++    E+   VY  + + G++PD V  + +I      G +  A    
Sbjct: 147 SPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCF 206

Query: 285 QEAKNQGISVGIISYSSL-MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           +     G+     + ++L +G C   +  +KA  L+  M  +  +    +   LI  LC+
Sbjct: 207 RLLLEGGLEPETFTCNALVLGYCRTGE-LRKACWLFLMMPLMGCQRNEYSYTILIQGLCE 265

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
              + + + +   MK  G  PN   ++ L+    +   V    +L     ++GV+P+++ 
Sbjct: 266 AKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMT 325

Query: 404 FKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALM-------------VYR 448
           +  +I   S+  R   A  + E ++  N   P   + WT   L+             +  
Sbjct: 326 YNAMIVGYSKLGRMNDALKIKE-LMEKNGCHP---DDWTYNTLIYGLCDQKTEEAEELLN 381

Query: 449 EAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD 508
            A+  G  PTV   + ++    +    D   R+   +  S   L       LI+   + D
Sbjct: 382 NAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKD 441

Query: 509 --PRAFSLLEEAASFGIVPCV 527
               A  LL E ++ G+VP V
Sbjct: 442 RLKEAKELLNEISANGLVPNV 462


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 179/396 (45%), Gaps = 13/396 (3%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV       N   ++G + +      +M  +G+L     Y++    +CK+Q   K     
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVL 257

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +V N   P   T+N ++    SS   + A   L+ +   G++ D   Y +L+    K+
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 141 GKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+      MF++     +KP+   +  L+      GA+     +L  M    + + P+H 
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPNHY 375

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
               L+ A A  G+VD+A  V+  + +  +      Y   I    ++G  E A   ++ M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             + + P  +  ++LI       K + A E++ E  ++GI +  I ++S++ +       
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            ++ +L++ M  I +KP + T + LI   C   ++ +  ++L+ M S+G+ P+ +TY+ L
Sbjct: 496 IESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +    +   +E  L+L  + +  GV P+++ +  I+
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIIL 591



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 112/477 (23%), Positives = 205/477 (42%), Gaps = 44/477 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           P L T+ +L+  C  +   +  F  L  V + G + D   +T L+   CA     DAM  
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            ++        P+   +N L+           A ++L  M  +     PD ++   ++  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 201 CANAGQVDRAREVYKMIHKYNIKGT-PEVYT----IAINCCSQTGDWEFACSVYDDMTKK 255
               G +D+A   Y   H+   +G  P V T    IA  C +Q  D   A  V   M K 
Sbjct: 209 FFKEGDLDKAYGTY---HEMLDRGILPNVVTYNSIIAALCKAQAMDK--AMEVLTSMVKN 263

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           GV+P+    ++++     +G+ + A   L++  + G+   +++Y+SLM          +A
Sbjct: 264 GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEA 323

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            ++++ M    LKP ++T   L+        L +   +L  M   G+ PN   +SIL+ A
Sbjct: 324 RKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICA 383

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNEHVLS------ 427
             ++  V+  +++ S+ ++ G+ P+ V +  +IG +C S R E A    E ++       
Sbjct: 384 YAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443

Query: 428 ---FNS--GRPQIENKW---TSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE 479
              +NS      I +KW     L L +    I   TI    ++       ++  +  + +
Sbjct: 444 NIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFD 503

Query: 480 RLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP-CVSFKEI 532
            +V  +GV  + +  S   +LIDG+   G+ D  A  LL    S G+ P CV++  +
Sbjct: 504 LMVR-IGVKPNIITYS---TLIDGYCLAGKMD-EATKLLASMVSVGMKPDCVTYNTL 555



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 174/397 (43%), Gaps = 19/397 (4%)

Query: 21  YAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           ++  V   + +YN L+    + GR +E   + + M ++GL      Y         ++ A
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY-GTLLQGYATKGA 354

Query: 77  IKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           + E      L+     +P    F++L+   A     + A  V   +++ GL  D   Y T
Sbjct: 355 LVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414

Query: 133 LITTCAKSGKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           +I    KSG+V DAM        E + P  +V+N+LI +       D+A +++ EM    
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLD-- 472

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             +  D I   +++ +    G+V  + +++ ++ +  +K     Y+  I+     G  + 
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDE 532

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  +   M   G+ PD V  + LI+      ++E A  + +E ++ G+S  II+Y+ ++ 
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                +    A ELY  +     +  +ST N ++  LC  +   + + +  ++    L  
Sbjct: 593 GLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
            T T++I++ A  +    +    L +    +G++P++
Sbjct: 653 ETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 149/340 (43%), Gaps = 12/340 (3%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +  KL  +P++ TF  L+           AF ++  + ++G + +  +Y TLI    K+G
Sbjct: 125 KMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNG 184

Query: 142 KVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            V+   E          +  D V +N L+T    SG   +A  +L +M      ++PD  
Sbjct: 185 DVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKR--RINPDVF 242

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T  AL+ A    G +D A+E+YK + + +I      Y   IN     G    A   +D M
Sbjct: 243 TFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLM 302

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             KG  P+ V  + LI+    + +VE   ++ Q    +G+     +Y++L+         
Sbjct: 303 ASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKL 362

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           + A +++  M S  + P + T   L+  LC   ++   M   +DM+S       + Y+I+
Sbjct: 363 RVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIM 422

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMC 411
           +    + D VE    L  +   +GV P+   +   I+G+C
Sbjct: 423 IHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLC 462



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 147/339 (43%), Gaps = 11/339 (3%)

Query: 82   RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +  KL   P++ T   L++        + A  ++  + E GL+ +  +Y T+I    K+ 
Sbjct: 675  KMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNR 734

Query: 142  KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
             ++   E         +  D V +N LI+    SG    A  +L +M      +DP+ I 
Sbjct: 735  DLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKR--KIDPNVIF 792

Query: 194  IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              AL+      G +  A+ +YK + + ++      Y   IN     G    A  ++D M 
Sbjct: 793  FTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMV 852

Query: 254  KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
             KG  PD V  + LI     + +VE   ++  E  +QG+     +Y++L+     A    
Sbjct: 853  SKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLN 912

Query: 314  KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             A +++  M    + P + T N L+  LC+  ++ K + ++ D++   +  + ITY+I++
Sbjct: 913  VAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIII 972

Query: 374  VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
                R D V+    L       GV  + + +  +I G+C
Sbjct: 973  QGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLC 1011



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/346 (20%), Positives = 145/346 (41%), Gaps = 12/346 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--- 144
           P P++  F  +++  A     +    +   ++  G+  D   +T LI    +  +     
Sbjct: 611 PIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLAL 670

Query: 145 -----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                 M    +P  V   +L+    Q      A  ++  M AE+  ++P+ +    ++ 
Sbjct: 671 ALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSM-AEL-GLEPNVVIYNTVIN 728

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                  ++ A E++  + K  I      Y   I+    +G W  A  +  DM K+ + P
Sbjct: 729 GLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDP 788

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + +F +ALID     G +  A  + +E   + +   I++Y+SL+           A  ++
Sbjct: 789 NVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMF 848

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M S    P V T N LIT  C   ++   M++  +M   GL  +  TY+ L+    + 
Sbjct: 849 DLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQA 908

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKARTLNE 423
             + V   + ++  + GV P++V +  ++  +C+  + EKA  + E
Sbjct: 909 GKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVE 954



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 155/353 (43%), Gaps = 23/353 (6%)

Query: 33   NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
            N   +  R  E + L++ M   GL     +Y+     +CK++        F+ +     +
Sbjct: 693  NGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIV 752

Query: 93   S---TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            +   T+N L+S +C S + ++ A ++LR + +  +  +   +T LI T  K G +     
Sbjct: 753  ADAVTYNTLISGLCNSGRWTDAA-RLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKN 811

Query: 144  ---DAMFENVKPDRVVFNALITA-C--GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
               + +  +V P+ + +N+LI   C  G+ G     FD++           PD +T   L
Sbjct: 812  LYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCF-----PDVVTYNTL 866

Query: 198  MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            +     + +V+   +++  +    + G    Y   I+   Q G    A  V++ M   GV
Sbjct: 867  ITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGV 926

Query: 258  IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKAL 316
             PD V  + L+D   + GK+E A  ++++ +   + V II+Y+ ++ G C N K  ++A 
Sbjct: 927  PPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDK-VKEAW 985

Query: 317  ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
             L+  +    +K        +I+ LC      +  ++ + MK  G  P+   Y
Sbjct: 986  CLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDGFMPSERIY 1038



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 74/346 (21%), Positives = 140/346 (40%), Gaps = 51/346 (14%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    + G ++  ++LL +ME+KG L  D                           
Sbjct: 173 YNTLIDCLCKNGDVNIALELLNEMEKKGRLAAD--------------------------- 205

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
               L T+N L++    S +   A ++LR + +  +  D   +T LI    K G +D   
Sbjct: 206 ----LVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQ 261

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGA 196
           E        ++ P+ V +N+LI      G +  A   FD++A          P+ +T   
Sbjct: 262 ELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCF-----PNVVTYNT 316

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+     + +V+   ++++ +++  + G    Y   I+   Q G    A  ++  M   G
Sbjct: 317 LINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCG 376

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V PD +    L+      G++ +A     + ++    +GI++Y+ ++     A   ++A 
Sbjct: 377 VTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAW 436

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           EL+  +    +KP   T   +I  LC      +  E+   MK  G+
Sbjct: 437 ELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGI 482



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 144/350 (41%), Gaps = 25/350 (7%)

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
           A D+  EM  +  P+ P  +    L+ A AN  + +      + +  + I      +TI 
Sbjct: 49  ALDLFLEM-VQSQPL-PSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTIL 106

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           I+C  +      A S+   M K G  P  V   +L+       ++  AF ++      G 
Sbjct: 107 IHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGY 166

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVSTMNALITALCDGDQLPKTM 351
              ++ Y++L+       +   ALEL   M K  +L   + T N L+T LC   +  +  
Sbjct: 167 EPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAA 226

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
            +L DM    + P+  T++ L+ A  ++ +++    L  Q  +  + PN V +  +I G+
Sbjct: 227 RILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGL 286

Query: 411 C--SRRYEKARTLN--------EHVLSFNS------GRPQIENKWTSLALMVYREAIVAG 454
           C   R Y   +T +         +V+++N+         ++E+       M YRE +V  
Sbjct: 287 CMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRM-YREGLVGD 345

Query: 455 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
           T     ++       +L    DI   +V + GV+ D +     C L+ G 
Sbjct: 346 TFTYNTLIHGYCQVGKLRVAKDIFSWMV-SCGVTPDIITH---CILLHGL 391



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/193 (22%), Positives = 88/193 (45%), Gaps = 10/193 (5%)

Query: 243 EFACSVYDD-------MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
           E  C  +DD       M +   IP  V  + ++       K +    +  + +N GIS  
Sbjct: 590 ELHCIKFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHD 649

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           + S++ L+        +  AL L   M  +  +P++ T+ +L+   C G++  + + ++ 
Sbjct: 650 LYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVD 709

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-- 412
            M  LGL PN + Y+ ++    +  D+   L +    ++ G++ + V +  +I G+C+  
Sbjct: 710 SMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSG 769

Query: 413 RRYEKARTLNEHV 425
           R  + AR L + V
Sbjct: 770 RWTDAARLLRDMV 782



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 90/201 (44%), Gaps = 12/201 (5%)

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
           +E A  ++ +M +   +P  V  + L+    +  + E      Q+ +  GIS  + S++ 
Sbjct: 46  FEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLYSFTI 105

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+           AL +   M  +   P++ T  +L+   C  +++     +++ M   G
Sbjct: 106 LIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSG 165

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPNLVMFKCII-GMC-SRRYEKA 418
             PN + Y+ L+    +  DV + L LL++ ++ G +  +LV +  ++ G+C S  + +A
Sbjct: 166 YEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQA 225

Query: 419 ---------RTLNEHVLSFNS 430
                    R +N  V +F +
Sbjct: 226 ARILRDMTKRRINPDVFTFTA 246



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/136 (19%), Positives = 61/136 (44%)

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
           H+ + E A ++  E         ++ ++ L+ A +N + ++  +   + M+   +   + 
Sbjct: 42  HSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGISHDLY 101

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           +   LI   C   +L   + +L  M  LG  P+ +T+  LL     ++ +     L++  
Sbjct: 102 SFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSLVASM 161

Query: 393 KEDGVIPNLVMFKCII 408
            + G  PN+V++  +I
Sbjct: 162 VKSGYEPNVVVYNTLI 177



 Score = 39.3 bits (90), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 51/238 (21%), Positives = 98/238 (41%), Gaps = 19/238 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            ++QG + E  +L + M +  +      Y++    +C   + +  A + F L+ +    P
Sbjct: 251 FVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGR-LYHAKKTFDLMASKGCFP 309

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MF 147
            + T+N L++    S+  E   ++ + +   GL  D   Y TLI    + GK+     +F
Sbjct: 310 NVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIF 369

Query: 148 E-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA--EVHPVDPDHITIGALMKA 200
                  V PD +    L+     +G +  A     +M +  +   +   +I I  L KA
Sbjct: 370 SWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKA 429

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                +V+ A E++  +    +K     YTI I    + G    A  ++  M + G+I
Sbjct: 430 ----DKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGII 483


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/427 (20%), Positives = 182/427 (42%), Gaps = 56/427 (13%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL-- 92
           L+R+  I E  DL   M  +G+       H      C  +  ++EA  +F+      +  
Sbjct: 235 LVRRNMIGELRDLYNKMVLRGIYGDHFTVHV-MVRACLKEGRVEEAEEYFRETKERGVKL 293

Query: 93  --STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
               +++++       +S    ++L  ++E G       +T++I  C   G +       
Sbjct: 294 DAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLK 353

Query: 144 DAMFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           + M    KP + VV  +L+      G +D A ++  ++  +   + P+ +T   L++ C 
Sbjct: 354 EEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITED--GLFPNKVTYSVLIEGCC 411

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPE----------------------------------- 227
           N+G +++A E+Y  +    + G P                                    
Sbjct: 412 NSGNIEKASELYTQMK---LNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVAN 468

Query: 228 --VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
              Y I ++   + G  + ACS+ D+M  +G++P+ V  + +I      G ++ A  +  
Sbjct: 469 IFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFS 528

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           +   + +   +++YS L+       + +KAL+L++ M S+ + PT  T N +I  LC   
Sbjct: 529 DMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVG 588

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           Q+ +  + L +    G  P+ +TY+ ++    ++ +++  L +  +  E GV PN+V + 
Sbjct: 589 QMSEARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYT 648

Query: 406 CII-GMC 411
            +I G C
Sbjct: 649 SLINGFC 655



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 74/385 (19%), Positives = 167/385 (43%), Gaps = 13/385 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPT 91
           L + G++ E   LL++M  +G++     Y+      C+       +  F  ++     P 
Sbjct: 479 LCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPN 538

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK 151
           + T+++L+       DSE A  +   +    +      + T+I    K G++    + +K
Sbjct: 539 VVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLK 598

Query: 152 --------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                   P  + +N+++    + G +D A  V  EM      V P+ +T  +L+     
Sbjct: 599 NFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCE--FGVSPNVVTYTSLINGFCK 656

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           + ++D A +    + +  ++     Y+  I+   +  D E A  ++ ++ + G+ P+ + 
Sbjct: 657 SNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIV 716

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +++I        +EAA    ++  N  I   + +Y++L+           A +LY  M 
Sbjct: 717 YNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEML 776

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           S  + P + T + L+  LC+  QL    ++L +M    + P+ + Y+ L+    R+ +++
Sbjct: 777 SKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLK 836

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
               L  +  + G++P+ V +  +I
Sbjct: 837 EAFTLHDEMLDRGLVPDDVTYDILI 861



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 153/351 (43%), Gaps = 14/351 (3%)

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
           +VPN  +S  +M++  C    + + A  V   +    LK +   Y+ LI    K G  + 
Sbjct: 500 MVPN-VVSYNDMILGHCRKG-NMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEK 557

Query: 146 MFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
             +        N+ P    FN +I    + G +  A D L     E     P  +T  ++
Sbjct: 558 ALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEE--GFIPSCMTYNSI 615

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +      G +D A  VY+ + ++ +      YT  IN   ++   + A    D+M +KG+
Sbjct: 616 VDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGFCKSNRIDLALKTRDEMREKGL 675

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             D    SALID       +E+A ++  E    G+S   I Y+S++    +  N + AL 
Sbjct: 676 ELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAALV 735

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
            Y+ M + ++   + T   LI  L    +L    ++  +M S G+ P+ IT+ +L+    
Sbjct: 736 WYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNGLC 795

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVL 426
            K  +E    +L +     + P+++++  +I    R    ++A TL++ +L
Sbjct: 796 NKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEML 846



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 151/340 (44%), Gaps = 17/340 (5%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQ 74
           A D+   + +Y+ LI    ++G   + +DL + M    +   D  ++     +CK     
Sbjct: 532 ARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMS 591

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +A  +   F +    P+  T+N ++       + + A  V R + E G+  +   YT+LI
Sbjct: 592 EARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLI 651

Query: 135 TTCAKSGKVDAMFEN--------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               KS ++D   +         ++ D   ++ALI    +   ++ A D+  E+  EV  
Sbjct: 652 NGFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFEL-LEVG- 709

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + P+ I   +++    +   ++ A   YK +    I      YT  I+   + G   FA 
Sbjct: 710 LSPNRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFAS 769

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +Y +M  KG++PD +    L++   + G++E A +IL+E   + ++  ++ Y++L+   
Sbjct: 770 DLYMEMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGY 829

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
               N ++A  L++ M    L P   T + LI     GD+
Sbjct: 830 FREGNLKEAFTLHDEMLDRGLVPDDVTYDILINGKFKGDR 869



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 72/353 (20%), Positives = 142/353 (40%), Gaps = 73/353 (20%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           ++V P     N L+TA  +   +    D+  +M   +  +  DH T+  +++AC   G+V
Sbjct: 219 QDVIPWVPYMNILLTALVRRNMIGELRDLYNKM--VLRGIYGDHFTVHVMVRACLKEGRV 276

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-VFLSA 266
           + A E ++   +  +K     Y+I I    +  +      + ++M ++G +P E  F S 
Sbjct: 277 EEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSV 336

Query: 267 LIDFAGHAGKVEA----------------------------------AFEILQEAKNQGI 292
           ++        VEA                                  A  +  +    G+
Sbjct: 337 IVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGL 396

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI-------------- 338
               ++YS L+  C N+ N +KA ELY  MK   + P+V  +N+L+              
Sbjct: 397 FPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASK 456

Query: 339 --------------------TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
                               + LC G ++ +   +L +M + G+ PN ++Y+ +++   R
Sbjct: 457 LFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCR 516

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLSFN 429
           K ++++   + S      + PN+V +  +I    ++   EKA  L + +LS N
Sbjct: 517 KGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLN 569



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 113/272 (41%), Gaps = 8/272 (2%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANAGQVDRAR 211
           D  VFN L+ A  ++  ++ A D    M  + V P  P    +  L+ A      +   R
Sbjct: 189 DHRVFNYLLNAYIRANRIENAIDCFNAMICQDVIPWVP---YMNILLTALVRRNMIGELR 245

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           ++Y  +    I G      + +  C + G  E A   + +  ++GV  D    S +I   
Sbjct: 246 DLYNKMVLRGIYGDHFTVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAV 305

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
                     E+L+E K +G      +++S++ AC    N  +AL L E M +      +
Sbjct: 306 CKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNL 365

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
               +L+   C    L   + + + +   GL PN +TYS+L+  C    ++E    L +Q
Sbjct: 366 VVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQ 425

Query: 392 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 423
            K +G+ P++     ++    R Y KA    E
Sbjct: 426 MKLNGIPPSVFNVNSLL----RGYLKAPLWEE 453



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 110/281 (39%), Gaps = 24/281 (8%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           V +AL+       +  R F         +  VD   + +  LM++    G    AR   K
Sbjct: 103 VIDALLCHVNDPQSALRYFKRAETQRGFIRGVDAYCVLLHILMRSPETHGH---AR---K 156

Query: 216 MIHKY---NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           ++++Y   +   +P V+   +  C++  D+E    V++             L+A I    
Sbjct: 157 LLNRYVSGDSDPSPVVFVDHLINCAKRFDFELDHRVFN-----------YLLNAYI---- 201

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            A ++E A +       Q +   +   + L+ A        +  +LY  M    +     
Sbjct: 202 RANRIENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHF 261

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T++ ++ A     ++ +  E   + K  G+  +   YSI++ A  +K +  +GL LL + 
Sbjct: 262 TVHVMVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEM 321

Query: 393 KEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP 433
           KE G +P+   F  +I  C  +      L       N G+P
Sbjct: 322 KERGWVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKP 362


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 178/388 (45%), Gaps = 15/388 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF----FKLVP 88
           N   +  R  + I L   ME+ G+      Y+     +CKS + + EA+RF     K   
Sbjct: 264 NAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGR-LDEAYRFKEKMVKEKV 322

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
           +P+L T+++ ++     +  + A  VL+ + E G   +  +Y TLI    K G +     
Sbjct: 323 SPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALK 382

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              D + + + P+ V  N+LI    +S  + +A +VL EM     P++    ++  +   
Sbjct: 383 IRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSM-VINWL 441

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           C     V     + +M+ + N++    + T  ++   + G    A  ++  +  KG +P+
Sbjct: 442 CLKFRFVTALHFIREMLLR-NLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPN 500

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  +ALI     AG ++   ++L++   +G+    I+Y++L+  C      ++  EL E
Sbjct: 501 IVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKE 560

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    ++P + T N L+  LC+ D++ +   +  + K  G  PN  TY +++    + +
Sbjct: 561 EMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKAN 620

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            VE G  LL++     +  N V++  +I
Sbjct: 621 KVEEGENLLNELVSKKLELNSVVYNSLI 648



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 117/498 (23%), Positives = 205/498 (41%), Gaps = 65/498 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P+L T   L+S    + + + +++V   +   G+  D  L++T+I    K  + D    +
Sbjct: 219 PSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGL 278

Query: 147 FEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F       V P+ V +N +I    +SG +D A+    +M  E   V P  IT    +   
Sbjct: 279 FSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKE--KVSPSLITYSVFINGL 336

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               ++D A  V K + +        VY   I+   + G+   A  + DDM  KG+ P+ 
Sbjct: 337 IKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNS 396

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM------------------ 303
           V L++LI     + ++  A  +L+E   +G+ +   S+S ++                  
Sbjct: 397 VTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIRE 456

Query: 304 ------------------GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
                             G C   K  + A+EL+  +      P + T NALI  LC   
Sbjct: 457 MLLRNLRPNDGLLTTLVSGLCKAGKQGE-AVELWCRLLGKGFVPNIVTSNALIHGLCKAG 515

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
            + +T+++L DM   GL  + ITY+ L+  C ++  V+ G  L  +  + G+ P++  F 
Sbjct: 516 NMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFN 575

Query: 406 CII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVS 463
            ++ G+C + + ++A  L  H    N   P +      +        +  G     E+VS
Sbjct: 576 LLLHGLCNADKIDEASRL-WHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVS 634

Query: 464 KVLGCLQLPYNADIRE-----------RLVENLGVSADALKRSNLCSLIDGF---GEYDP 509
           K L    + YN+ IR            RL +++      L  +   SL+ G    G  D 
Sbjct: 635 KKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDD 694

Query: 510 RAFSLLEEAASFGIVPCV 527
            A  LL+E    G++P V
Sbjct: 695 -AKHLLDEMRKEGLLPNV 711



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 104/436 (23%), Positives = 177/436 (40%), Gaps = 63/436 (14%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS------QKAIKE-- 79
           YN LI    + G ISE + + +DM  KG+       ++     CKS      +  ++E  
Sbjct: 364 YNTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMI 423

Query: 80  --------------------AFRFF------------KLVPNPTLSTFNMLMSVCASSKD 107
                                FRF              L PN  L T  ++  +C + K 
Sbjct: 424 GRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLT-TLVSGLCKAGKQ 482

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNA 159
            E      RL+ + G   +      LI    K+G +        D +   +  DR+ +N 
Sbjct: 483 GEAVELWCRLLGK-GFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNT 541

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
           LI+ C + G V   F++  EM  +   + PD  T   L+    NA ++D A  ++   H+
Sbjct: 542 LISGCCKEGKVKEGFELKEEMVKK--GIQPDIYTFNLLLHGLCNADKIDEASRLW---HE 596

Query: 220 YNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
               G  P VYT  + I+   +    E   ++ +++  K +  + V  ++LI      G 
Sbjct: 597 CKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGN 656

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           + AAF +  + K++G+ +   +YSSLM    N      A  L + M+   L P V     
Sbjct: 657 MNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTT 716

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           +I       Q+ K   VL +M S  + PN  TY+I++    +    +    LL++  E G
Sbjct: 717 IIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKG 776

Query: 397 VIPNLVMFKCII-GMC 411
           ++P+ V +     G+C
Sbjct: 777 ILPDAVTYNAFTNGLC 792



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 84/392 (21%), Positives = 160/392 (40%), Gaps = 13/392 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPN 89
           N L  + R    +  + +M  + L   D +       +CK+ K   A++   R       
Sbjct: 439 NWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFV 498

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T N L+     + + +   ++LR + E GL  D   Y TLI+ C K GKV   FE 
Sbjct: 499 PNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFEL 558

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   ++PD   FN L+     +  +D A  +  E     +   P+  T G ++   
Sbjct: 559 KEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYV--PNVYTYGVMIDGY 616

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             A +V+    +   +    ++    VY   I      G+   A  + DDM  +GV+   
Sbjct: 617 CKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSC 676

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              S+L+    + G V+ A  +L E + +G+   ++ Y++++G  S      K   + + 
Sbjct: 677 ATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQE 736

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S  + P   T   +I   C   +  +  ++L++M   G+ P+ +TY+       ++  
Sbjct: 737 MSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGK 796

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           VE    +  +     V  + + +  +I  C +
Sbjct: 797 VEEAFKVCDEMSSGAVCLDEITYTTLIDGCHQ 828



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 170/405 (41%), Gaps = 19/405 (4%)

Query: 25  VSEQLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  L +Y    N LI+  +I E   +L++M   G +  + VY+      CK    I EA
Sbjct: 322 VSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCK-MGNISEA 380

Query: 81  FR----FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT- 135
            +          +P   T N L+     S     A  VL  +   GL  +   ++ +I  
Sbjct: 381 LKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINW 440

Query: 136 TCAKSGKVDAM-------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
            C K   V A+         N++P+  +   L++   ++G    A ++   +  +     
Sbjct: 441 LCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGK--GFV 498

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ +T  AL+     AG +    ++ + + +  +      Y   I+ C + G  +    +
Sbjct: 499 PNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFEL 558

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            ++M KKG+ PD    + L+    +A K++ A  +  E K  G    + +Y  ++     
Sbjct: 559 KEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCK 618

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           A   ++   L   + S KL+      N+LI A C    +     +  DMKS G+  +  T
Sbjct: 619 ANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCAT 678

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           YS L+        V+    LL + +++G++PN+V +  IIG  S+
Sbjct: 679 YSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSK 723



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 112/260 (43%), Gaps = 12/260 (4%)

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A +V+ ++ K  +  + +  T  ++   +  + + +  VYD +   G+IPD    S +I+
Sbjct: 205 AADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMIN 264

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                 + + A  +  + +  G++  +++Y++++     +    +A    E M   K+ P
Sbjct: 265 AFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSP 324

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
           ++ T +  I  L   +++ +   VL +M  LG  PN + Y+ L+    +  ++   L + 
Sbjct: 325 SLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIR 384

Query: 390 SQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHV----LSFNSGRPQIENKWTSL- 442
                 G+ PN V    +I G C S +  +A  + E +    L  N G   +   W  L 
Sbjct: 385 DDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLK 444

Query: 443 -----ALMVYREAIVAGTIP 457
                AL   RE ++    P
Sbjct: 445 FRFVTALHFIREMLLRNLRP 464



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 1/171 (0%)

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
           + FA  V+  + KKG+ P     + L+     A +++ ++E+       GI   +  +S+
Sbjct: 202 FGFAADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFST 261

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           ++ A         A+ L+  M+ + + P V T N +I  LC   +L +       M    
Sbjct: 262 MINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEK 321

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + P+ ITYS+ +    + + ++    +L +  E G +PN V++  +I G C
Sbjct: 322 VSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYC 372


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 146/323 (45%), Gaps = 12/323 (3%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------ 148
           FN+LM+      +   A +V   + +  L+     + TLI    K G +D  F       
Sbjct: 243 FNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQME 302

Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
               +PD   ++ALI A  +   +D A  +  EM      + P+ +    L+   +  G+
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKR--GLIPNDVIFTTLIHGHSRNGE 360

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           +D  +E Y+ +    ++    +Y   +N   + GD   A ++ D M ++G+ PD++  + 
Sbjct: 361 IDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTT 420

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 325
           LID     G VE A EI +E    GI +  + +S+L+ G C   +       L E +++ 
Sbjct: 421 LIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRA- 479

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            +KP   T   ++ A C         ++L +M+S G  P+ +TY++LL    +   ++  
Sbjct: 480 GIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNA 539

Query: 386 LMLLSQAKEDGVIPNLVMFKCII 408
            MLL      GV+P+ + +  ++
Sbjct: 540 DMLLDAMLNIGVVPDDITYNTLL 562



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 159/360 (44%), Gaps = 16/360 (4%)

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           N+  +QK   E     K    PT+ +FN L++      + +  F++   ++++  + D  
Sbjct: 255 NISDAQKVFDE---ITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVF 311

Query: 129 LYTTLITTCAKSGKVDA---MFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
            Y+ LI    K  K+D    +F+      + P+ V+F  LI    ++G +D   +   +M
Sbjct: 312 TYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKM 371

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
            ++   + PD +    L+      G +  AR +   + +  ++     YT  I+   + G
Sbjct: 372 LSK--GLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGG 429

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
           D E A  +  +M + G+  D V  SAL+      G+V  A   L+E    GI    ++Y+
Sbjct: 430 DVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYT 489

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
            +M A     + Q   +L + M+S    P+V T N L+  LC   Q+     +L  M ++
Sbjct: 490 MMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNI 549

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 420
           G+ P+ ITY+ LL    R  +     +   Q  E G++ +L  +K I+    R  +  R 
Sbjct: 550 GVVPDDITYNTLLEGHHRHANSSKRYI---QKPEIGIVADLASYKSIVNELDRASKDHRN 606



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 143/303 (47%), Gaps = 11/303 (3%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKV-DA--MFENV-----KPDRVVFNALITACGQSGA 169
           + +AG   +  ++  L+    K G + DA  +F+ +     +P  V FN LI    + G 
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGN 290

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D  F +  +M  E     PD  T  AL+ A     ++D A  ++  + K  +     ++
Sbjct: 291 LDEGFRLKHQM--EKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIF 348

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           T  I+  S+ G+ +     Y  M  KG+ PD V  + L++     G + AA  I+     
Sbjct: 349 TTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIR 408

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           +G+    I+Y++L+       + + ALE+ + M    ++      +AL+  +C   ++  
Sbjct: 409 RGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVID 468

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
               L +M   G+ P+ +TY++++ A  +K D + G  LL + + DG +P++V +  ++ 
Sbjct: 469 AERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLN 528

Query: 409 GMC 411
           G+C
Sbjct: 529 GLC 531



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 60/131 (45%)

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           E  + G  + +  ++ LM       N   A ++++ +    L+PTV + N LI   C   
Sbjct: 230 EILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVG 289

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
            L +   +   M+     P+  TYS L+ A  +++ ++    L  +  + G+IPN V+F 
Sbjct: 290 NLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFT 349

Query: 406 CIIGMCSRRYE 416
            +I   SR  E
Sbjct: 350 TLIHGHSRNGE 360


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 185/413 (44%), Gaps = 21/413 (5%)

Query: 12  PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           P+P+    N       +L  Y+ +I  G+  E + +     R  L   + V +   F  C
Sbjct: 81  PFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGI-----RNDLYTFNIVINC--FCCC 133

Query: 72  -KSQKAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
            +   A+    +  KL   P   T   L++  C  ++ S+    V ++V E G K D   
Sbjct: 134 FQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV-EIGYKPDIVA 192

Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y  +I +  K+ +V+  F+         ++P+ V + AL+     S     A  +L++M 
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
            +   + P+ IT  AL+ A    G+V  A+E+++ + + +I      Y+  IN       
Sbjct: 253 KK--KITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            + A  ++D M  KG + D V  + LI+    A +VE   ++ +E   +G+    ++Y++
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+     A +  KA E +  M    + P + T N L+  LCD  +L K + +  DM+   
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           +  + +TY+ ++    +   VE    L       G+ P++V +  ++ G+C++
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTK 483



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 151/348 (43%), Gaps = 12/348 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P++  FN L+S     K  +    + + ++  G++ D   +  +I       +V    
Sbjct: 81  PFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLAL 140

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                      +PDRV   +L+    +   V  A  ++ +M  E+    PD +   A++ 
Sbjct: 141 SILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM-VEIG-YKPDIVAYNAIID 198

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           +     +V+ A + +K I +  I+     YT  +N    +  W  A  +  DM KK + P
Sbjct: 199 SLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP 258

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + +  SAL+D     GKV  A E+ +E     I   I++YSSL+          +A +++
Sbjct: 259 NVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMF 318

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M S      V + N LI   C   ++   M++  +M   GL  NT+TY+ L+    + 
Sbjct: 319 DLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQA 378

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
            DV+      SQ    G+ P++  +  ++ G+C     EKA  + E +
Sbjct: 379 GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 426



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 171/373 (45%), Gaps = 36/373 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   R+ R+S+ + L++ M   G       Y+A   ++CK+++ + +AF FFK +     
Sbjct: 163 NGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKR-VNDAFDFFKEIERKGI 221

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P + T+  L++ +C SS+ S+ A    RL+                         D + 
Sbjct: 222 RPNVVTYTALVNGLCNSSRWSDAA----RLLS------------------------DMIK 253

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + + P+ + ++AL+ A  ++G V  A ++  EM      +DPD +T  +L+       ++
Sbjct: 254 KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVR--MSIDPDIVTYSSLINGLCLHDRI 311

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A +++ ++           Y   IN   +    E    ++ +M+++G++ + V  + L
Sbjct: 312 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I     AG V+ A E   +    GIS  I +Y+ L+G   +    +KAL ++E M+  ++
Sbjct: 372 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 431

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
              + T   +I  +C   ++ +   +   +   GL P+ +TY+ ++     K  +     
Sbjct: 432 DLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEA 491

Query: 388 LLSQAKEDGVIPN 400
           L ++ K++G++ N
Sbjct: 492 LYTKMKQEGLMKN 504



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 195/429 (45%), Gaps = 26/429 (6%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKAIKE 79
           D+ E+L S  RL R  ++++ IDL  DM +      ++D +++  A    + K    I  
Sbjct: 51  DLRERL-SKTRL-RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSA-IVKLKKYDVVISL 107

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             +   L     L TFN++++          A  +L  + + G + D     +L+    +
Sbjct: 108 GKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCR 167

Query: 140 SGKV-------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
             +V       D M E   KPD V +NA+I +  ++  V+ AFD   E+  E   + P+ 
Sbjct: 168 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI--ERKGIRPNV 225

Query: 192 ITIGALMKACANAGQ-VDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSV 248
           +T  AL+    N+ +  D AR +  MI K   K TP V  Y+  ++   + G    A  +
Sbjct: 226 VTYTALVNGLCNSSRWSDAARLLSDMIKK---KITPNVITYSALLDAFVKNGKVLEAKEL 282

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +++M +  + PD V  S+LI+      +++ A ++     ++G    ++SY++L+     
Sbjct: 283 FEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCK 342

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           AK  +  ++L+  M    L     T N LI        + K  E  S M   G+ P+  T
Sbjct: 343 AKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWT 402

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
           Y+ILL       ++E  L++    ++  +  ++V +  +I GMC + + E+A +L    L
Sbjct: 403 YNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS-L 461

Query: 427 SFNSGRPQI 435
           S    +P I
Sbjct: 462 SLKGLKPDI 470


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 194/424 (45%), Gaps = 33/424 (7%)

Query: 26  SEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-------- 73
           S  + +YN LI+    + RISE   L   M++ G       Y      +C +        
Sbjct: 136 SPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALK 195

Query: 74  --QKAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
             Q+ + +  R+ ++   P + T+N+++  +C   ++ E A Q+   ++  G+      Y
Sbjct: 196 LHQEMLNDISRY-EINCKPNVITYNIIVDGLCKVGREDE-AKQLFEEMKTQGMIPSIISY 253

Query: 131 TTLITTCAKSGK-------VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
            +LI     +GK       +D M +  ++PD V FN LI    + G V  A  +L  M  
Sbjct: 254 NSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIE 313

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
               + PD +T  +L++     G ++ ARE++  +     +     Y + IN  S+T   
Sbjct: 314 S--GIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKV 371

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           E A  +Y++M   G  P+ +   +L+     AGKV+ A ++    K  GI+    +Y   
Sbjct: 372 EEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIF 431

Query: 303 M-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           + G C N   ++ A++L+  +KS   K  +  +N LI  LC   +L    E+   + + G
Sbjct: 432 LDGLCKNDCLFE-AMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEG 490

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
             PN +TY+I++    R+  V+   +L+ + + +G  P+++ +  ++    R + ++  L
Sbjct: 491 HEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLM----RGFYESNKL 546

Query: 422 NEHV 425
            E V
Sbjct: 547 EEVV 550



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 160/363 (44%), Gaps = 21/363 (5%)

Query: 65  ARFFNVCKSQKAI-KEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           A F   CK+       A  FF L+    P P+LS+FN L+S  A  K     F +   ++
Sbjct: 37  AFFLRHCKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMR 96

Query: 120 EAGLKAD-CKLYTTLITTCAKSGKVD--AMFENV-----KPDRVVFNALITACGQSGAVD 171
            +GL +D C L   L   C  +   +  A F  +      P+ V +N LI        + 
Sbjct: 97  LSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRIS 156

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA----REVYKMIHKYNIKGTPE 227
            A  +   M  +     PD +T G L+K     G ++ A    +E+   I +Y I   P 
Sbjct: 157 EATRLFLRM--QKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPN 214

Query: 228 V--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
           V  Y I ++   + G  + A  ++++M  +G+IP  +  ++LI     AGK E +  +L 
Sbjct: 215 VITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLD 274

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
           E  +QG+   +++++ L+          +A +L   M    + P + T N+LI   C   
Sbjct: 275 EMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVG 334

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
            L    E+   M S G  P+ I+Y++L+    +   VE  + L ++    G  PN++ + 
Sbjct: 335 DLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYD 394

Query: 406 CII 408
            ++
Sbjct: 395 SLL 397



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 181/383 (47%), Gaps = 18/383 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + GR  E   L E+M+ +G++     Y++     C + K  +E+ R    + +    P
Sbjct: 225 LCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKW-EESKRLLDEMLDQGLQP 283

Query: 91  TLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
            + TFN+L+ ++C   K  E A ++L ++ E+G+  D   Y +LI      G +++  E 
Sbjct: 284 DMVTFNVLIDTLCKEGKVIE-AKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSAREL 342

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                    +PD + +N LI    ++  V+ A  +  EM   +    P+ IT  +L+K  
Sbjct: 343 FVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEM--LLVGKRPNVITYDSLLKGI 400

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AG+VD A++++ ++  + I      Y I ++   +      A  ++ ++       + 
Sbjct: 401 FLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEI 460

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
             L+ LID    AGK+E A+E+ ++  N+G    +++Y+ ++          KA  L + 
Sbjct: 461 ENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQK 520

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M++    P + T N L+    + ++L + +++L  M    + P+ IT SI++    + + 
Sbjct: 521 MEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEK 580

Query: 382 VEVGLMLLSQAK-EDGVIPNLVM 403
            +  L LL +   + GV  +L+M
Sbjct: 581 YQECLHLLPRFPIQKGVDKHLLM 603



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 1/115 (0%)

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           S++ L+   +  K++ +   LY  M+   L     T+N L+  LC+ ++L +     + +
Sbjct: 71  SFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGI 130

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
              G  PN +TY+ L+     +  +     L  + ++ G  P++V +  +I G+C
Sbjct: 131 LRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLC 185



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 69/168 (41%), Gaps = 17/168 (10%)

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
            F +  + +  G+S    + + L+    N    ++    +  +      P + T N LI 
Sbjct: 88  VFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIK 147

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED---- 395
            LC   ++ +   +   M+ LG  P+ +TY  L+       ++ + L L  +   D    
Sbjct: 148 GLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRY 207

Query: 396 --GVIPNLVMFKCII-GMCS-RRYEKARTLNEH---------VLSFNS 430
                PN++ +  I+ G+C   R ++A+ L E          ++S+NS
Sbjct: 208 EINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNS 255


>gi|307110307|gb|EFN58543.1| hypothetical protein CHLNCDRAFT_140648 [Chlorella variabilis]
          Length = 877

 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 122/275 (44%), Gaps = 23/275 (8%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFE--------------NVKPDRVVFNALITACG 165
           E G + D +L TTL+  CA+ G+                     + P    + A + A  
Sbjct: 167 EIGYRPDDRLCTTLMRVCAQHGQAATALSLYDWMRTPGEEGGGGLTPSVFTYTAAMRAAL 226

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY--NIK 223
               +DRA  V  +  A    VD    T   L++ C   G  DRA   Y  +     + +
Sbjct: 227 TGSMMDRALQVWEDALAAKCEVDCRLCTT--LIEVCGRKGDTDRALAAYAQMRSSPKDSR 284

Query: 224 GTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
             P V  YT A+   S+ G WE A S++DDM   G  P     +A+I      G+ + A 
Sbjct: 285 MAPSVHAYTAAMRAASEGGRWEAALSIWDDMQAAGCKPTGHAYAAVISACAAGGQWQKAV 344

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
            +  +    G+   ++S ++L+ A      W++A ++ E M   ++KP V T  ALITAL
Sbjct: 345 GLFDDMLAWGVRPDVVSCTALITALGTDGQWERAEKVVEWMLRSEIKPNVRTYTALITAL 404

Query: 342 CDGDQLPKTMEVLSDMKSL---GLCPNTITYSILL 373
            +  Q  + ++++  M+     GL PN+ TYS LL
Sbjct: 405 GNARQWDRALDIVKRMRRHAFGGLEPNSYTYSALL 439



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 135/310 (43%), Gaps = 25/310 (8%)

Query: 58  DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           ++DK+  A   N    ++A+       ++   P       LM VCA    +  A  +   
Sbjct: 140 ELDKLVAALGRNKSTWRRALMLHEWLLEIGYRPDDRLCTTLMRVCAQHGQAATALSLYDW 199

Query: 118 VQEAGLKADCKLYTTLITTCAK-----SGKV---------DAMFENVKPDRVVFNALITA 163
           ++  G +    L  ++ T  A      +G +         DA+    + D  +   LI  
Sbjct: 200 MRTPGEEGGGGLTPSVFTYTAAMRAALTGSMMDRALQVWEDALAAKCEVDCRLCTTLIEV 259

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVD----PDHITIGALMKACANAGQVDRAREVYKMIHK 219
           CG+ G  DRA    A+M +   P D    P      A M+A +  G+ + A  ++  +  
Sbjct: 260 CGRKGDTDRALAAYAQMRSS--PKDSRMAPSVHAYTAAMRAASEGGRWEAALSIWDDMQA 317

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
              K T   Y   I+ C+  G W+ A  ++DDM   GV PD V  +ALI   G  G+ E 
Sbjct: 318 AGCKPTGHAYAAVISACAAGGQWQKAVGLFDDMLAWGVRPDVVSCTALITALGTDGQWER 377

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTMNA 336
           A ++++      I   + +Y++L+ A  NA+ W +AL++ + M+      L+P   T +A
Sbjct: 378 AEKVVEWMLRSEIKPNVRTYTALITALGNARQWDRALDIVKRMRRHAFGGLEPNSYTYSA 437

Query: 337 LITALCDGDQ 346
           L+  +  G+Q
Sbjct: 438 LLKTM--GEQ 445



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 62/124 (50%), Gaps = 1/124 (0%)

Query: 255 KGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           KG  P +EV   AL+     AGK + A  +L  A+  G +    +Y  L+ A S   +W+
Sbjct: 721 KGRGPVNEVVCGALMLAYERAGKWQEAVAVLDRAQTLGFAPRDYAYCGLIAAHSFKGDWR 780

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            AL + + M +  L P+V   NALI A     Q  + MEV  DM   G+  N++T S+L 
Sbjct: 781 AALRVRDRMAAAGLAPSVHVYNALIAACDRAHQYERAMEVARDMGRAGVPTNSVTQSLLD 840

Query: 374 VACE 377
             C+
Sbjct: 841 GVCK 844



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/260 (22%), Positives = 106/260 (40%), Gaps = 63/260 (24%)

Query: 216 MIHKY--NIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKK------GVIP------ 259
           M+H++   I   P+  + T  +  C+Q G    A S+YD M         G+ P      
Sbjct: 160 MLHEWLLEIGYRPDDRLCTTLMRVCAQHGQAATALSLYDWMRTPGEEGGGGLTPSVFTYT 219

Query: 260 -----------------------------DEVFLSALIDFAGHAGKVEAAF----EILQE 286
                                        D    + LI+  G  G  + A     ++   
Sbjct: 220 AAMRAALTGSMMDRALQVWEDALAAKCEVDCRLCTTLIEVCGRKGDTDRALAAYAQMRSS 279

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            K+  ++  + +Y++ M A S    W+ AL +++ M++   KPT     A+I+A   G Q
Sbjct: 280 PKDSRMAPSVHAYTAAMRAASEGGRWEAALSIWDDMQAAGCKPTGHAYAAVISACAAGGQ 339

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVA------CERKDDVEVGLMLLSQAKEDGVIPN 400
             K + +  DM + G+ P+ ++ + L+ A       ER + V V  ML S+ K     PN
Sbjct: 340 WQKAVGLFDDMLAWGVRPDVVSCTALITALGTDGQWERAEKV-VEWMLRSEIK-----PN 393

Query: 401 LVMFKCIIGMC--SRRYEKA 418
           +  +  +I     +R++++A
Sbjct: 394 VRTYTALITALGNARQWDRA 413



 Score = 45.4 bits (106), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 45/117 (38%)

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           + +  GALM A   AG+   A  V               Y   I   S  GDW  A  V 
Sbjct: 727 NEVVCGALMLAYERAGKWQEAVAVLDRAQTLGFAPRDYAYCGLIAAHSFKGDWRAALRVR 786

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           D M   G+ P     +ALI     A + E A E+ ++    G+    ++ S L G C
Sbjct: 787 DRMAAAGLAPSVHVYNALIAACDRAHQYERAMEVARDMGRAGVPTNSVTQSLLDGVC 843



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 1/105 (0%)

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           + G W+ A +V D     G  P +     LI      G   AA  +       G++  + 
Sbjct: 740 RAGKWQEAVAVLDRAQTLGFAPRDYAYCGLIAAHSFKGDWRAALRVRDRMAAAGLAPSVH 799

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
            Y++L+ AC  A  +++A+E+   M    + PT S   +L+  +C
Sbjct: 800 VYNALIAACDRAHQYERAMEVARDMGRAGV-PTNSVTQSLLDGVC 843



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 46/111 (41%)

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           +LM A   A  WQ+A+ + +  +++   P       LI A          + V   M + 
Sbjct: 733 ALMLAYERAGKWQEAVAVLDRAQTLGFAPRDYAYCGLIAAHSFKGDWRAALRVRDRMAAA 792

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           GL P+   Y+ L+ AC+R    E  + +       GV  N V    + G+C
Sbjct: 793 GLAPSVHVYNALIAACDRAHQYERAMEVARDMGRAGVPTNSVTQSLLDGVC 843


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 167/381 (43%), Gaps = 30/381 (7%)

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQV 114
           ++KV  A F            AF+  K++      P  ST++ +++    +   E AF +
Sbjct: 251 LNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLL 310

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENVKP-----DRVVFNALITACGQ 166
            + ++  G+  D   YT LI +  K+G ++   + F+ ++      + V + AL+ A  +
Sbjct: 311 FQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLK 370

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGT 225
           +  + +A D+   M     P  P+ IT  AL+     AG++ +A EVY K+I   +  G+
Sbjct: 371 AKQLPQASDIFNRMIDAGCP--PNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGS 428

Query: 226 PEVY------TIAINCCSQTGDWEFACSVY---------DDMTKKGVIPDEVFLSALIDF 270
              +      +IA N  +     +  C  +         D M   G  P+ +   ALID 
Sbjct: 429 DFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDG 488

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               GK++ A E+       G    + +Y+SL+ A    +    A+++   M      P 
Sbjct: 489 FCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPN 548

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           V T  A+I  LC   +  K +++LS M+  G  PN +TY+ L+    +   V++ L L  
Sbjct: 549 VVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFI 608

Query: 391 QAKEDGVIPNLVMFKCIIGMC 411
           Q    G  PN V ++ +I  C
Sbjct: 609 QMSTKGCAPNYVTYRVLINHC 629



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 108/515 (20%), Positives = 199/515 (38%), Gaps = 81/515 (15%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG------------------------- 122
           PNP+L  FN L+    +++D   A+++L+ + + G                         
Sbjct: 175 PNPSL--FNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPD 232

Query: 123 ------------LKADC---KLYTTLITTC-AKSGKVDAMFENVK--------PDRVVFN 158
                       L + C   K+ T     C    GK D  F+ +K        PD   ++
Sbjct: 233 LLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYS 292

Query: 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 218
            +IT   ++  V++AF +  EM +    V+PD  T   L+ +   AG +++AR  +  + 
Sbjct: 293 KVITFLCEAMKVEKAFLLFQEMKSV--GVNPDVYTYTILIDSFCKAGLIEQARSWFDEMR 350

Query: 219 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278
                     YT  ++   +      A  +++ M   G  P+ +  SAL+D    AG+++
Sbjct: 351 SIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQ 410

Query: 279 AAFEILQEAKNQGISVG----------------IISYSSLMGACSNAKNWQKALELYEHM 322
            A E+  +      +VG                +++Y +L+     A     A EL + M
Sbjct: 411 KACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAM 470

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            S   +P     +ALI   C   ++    EV   M   G  P   TY+ L+ A  +   +
Sbjct: 471 LSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRL 530

Query: 383 EVGLMLLSQAKEDGVIPNLVMFK------CIIGMCSRRYEKARTLNE-----HVLSFNSG 431
           ++ + +LSQ  E    PN+V +       C IG C +  +    + E     +V+++ + 
Sbjct: 531 DLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTAL 590

Query: 432 RPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSAD 490
              + ++    L+L ++ +    G  P       ++         D    L+  +  +  
Sbjct: 591 IDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYW 650

Query: 491 ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
                  CS++ GF +    +  LLEE  S G VP
Sbjct: 651 PKYLQGYCSVVQGFSKKFIASLGLLEELESHGTVP 685



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 149/349 (42%), Gaps = 29/349 (8%)

Query: 13  YPNGKHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFF 68
           Y  GKH +    ++  + +Y  LI    +  ++ +  +LL+ M   G      +Y A   
Sbjct: 431 YFEGKHTD---SIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALID 487

Query: 69  NVCKSQKA--IKEAF-RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
             CK  K    +E F R  K    PT+ T+  L+      +  + A +VL  + E+    
Sbjct: 488 GFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTP 547

Query: 126 DCKLYTTLIT------TCAKSGKVDAMFE--NVKPDRVVFNALITACGQSGAVDRAFDVL 177
           +   YT +I        C K+ K+ +M E     P+ V + ALI   G+SG VD +  + 
Sbjct: 548 NVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLF 607

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            +M+ +     P+++T   L+  C  AG +D A  +   + +       + Y   +    
Sbjct: 608 IQMSTK--GCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVV---- 661

Query: 238 QTGDWEFACSV--YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
           Q    +F  S+   +++   G +P       LID    AG++E A E+ +E      S+ 
Sbjct: 662 QGFSKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLN 721

Query: 296 IIS---YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           I S   Y+SL+ A   A   +KA ELY  +    + P +S    LI  L
Sbjct: 722 ITSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGL 770



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 74/369 (20%), Positives = 146/369 (39%), Gaps = 49/369 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMF- 147
           P+ +T+N L+ V A++   +  F+V + + E+G   D            K G+  DA+  
Sbjct: 38  PSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDALVM 97

Query: 148 ---ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
              E+ K D V+   +I+   ++   D A   L  M    +   P+ +T   L+      
Sbjct: 98  IEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRC--NSCIPNVVTYRTLLTGFLKK 155

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD---- 260
            Q+   + +  M+ K      P ++   ++      D+ +A  +   M   G  P     
Sbjct: 156 KQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAY 215

Query: 261 EVFLSAL-------------------------------IDFAGHA------GKVEAAFEI 283
            +F+ ++                               ++ A  A      GK + AF+I
Sbjct: 216 NIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQI 275

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           ++    +G      +YS ++     A   +KA  L++ MKS+ + P V T   LI + C 
Sbjct: 276 IKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCK 335

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
              + +      +M+S+G   N +TY+ LL A  +   +     + ++  + G  PN + 
Sbjct: 336 AGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTIT 395

Query: 404 FKCII-GMC 411
           +  ++ G+C
Sbjct: 396 YSALVDGLC 404



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 143/368 (38%), Gaps = 79/368 (21%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-----NVKPDRVVFNALITACGQSGAVD 171
           L +   ++  C++YT LI T    G  D  FE     ++ P+ V + ALI    ++  V 
Sbjct: 403 LCKAGEIQKACEVYTKLIGTSDNVGS-DFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVV 461

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY---------KMIHKYNI 222
            A ++L  M +  +  +P+HI   AL+      G++D A+EV+           +H Y  
Sbjct: 462 DAQELLDAMLS--NGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTS 519

Query: 223 ------------------------KGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKG 256
                                     TP V  YT  I+   + G+ + A  +   M +KG
Sbjct: 520 LIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKG 579

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA------- 309
             P+ V  +ALID  G +GKV+ + ++  +   +G +   ++Y  L+  C  A       
Sbjct: 580 CSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAH 639

Query: 310 --------KNWQKALELY------------------EHMKSIKLKPTVSTMNALITALCD 343
                     W K L+ Y                  E ++S    P       LI     
Sbjct: 640 SLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSK 699

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTIT---YSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
             +L + +E+  +M  L    N  +   Y+ L+ A      +E    L S+    GV+P 
Sbjct: 700 AGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPE 759

Query: 401 LVMFKCII 408
           L +F C+I
Sbjct: 760 LSVFVCLI 767



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 122/312 (39%), Gaps = 51/312 (16%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFF 84
           Y+ LI    + G+I    ++   M + G L     Y +    + K ++   A+K   +  
Sbjct: 482 YDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMV 541

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           +    P + T+  ++       + + A ++L +++E G   +   YT LI    KSGKVD
Sbjct: 542 ESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVD 601

Query: 145 AMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA-------------- 182
              +           P+ V +  LI  C  +G +D A  +L+EM                
Sbjct: 602 LSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVV 661

Query: 183 -----------------EVHPVDPDHITIGALMKACANAGQVDRAREVYK----MIHKYN 221
                            E H   P     G L+   + AG+++ A E++K    +    N
Sbjct: 662 QGFSKKFIASLGLLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLN 721

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           I  + ++YT  I         E A  +Y ++T+KGV+P+      LI       K   A 
Sbjct: 722 IT-SKDMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEAL 780

Query: 282 EILQEAKNQGIS 293
           ++     ++G++
Sbjct: 781 QLCYSICDEGVN 792



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 79/398 (19%), Positives = 144/398 (36%), Gaps = 75/398 (18%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           +P    +NAL+     +G +D  F V  EM+     +D    T+G   +A    G   R 
Sbjct: 37  RPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMD--KFTVGCFAQALCKEG---RW 91

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            +   MI + + K    + T  I+   +   ++ A S    M     IP+ V    L+  
Sbjct: 92  SDALVMIEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTG 151

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
                ++     I+     +G +     ++SL+ +  NA+++  A +L + M      P 
Sbjct: 152 FLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPG 211

Query: 331 VSTMNALITALCDGDQLPK----------------------------------------- 349
               N  I ++C G++LP                                          
Sbjct: 212 YVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDM 271

Query: 350 TMEVLSDMKSLGLCPNTITYS-ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             +++  M   G  P+T TYS ++   CE    VE   +L  + K  GV P++  +  +I
Sbjct: 272 AFQIIKVMMGKGFVPDTSTYSKVITFLCEAM-KVEKAFLLFQEMKSVGVNPDVYTYTILI 330

Query: 409 -GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 466
              C +   E+AR+  + + S                         A  +    ++   L
Sbjct: 331 DSFCKAGLIEQARSWFDEMRSIGCS---------------------ANVVTYTALLHAYL 369

Query: 467 GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
              QLP  +DI  R+++  G   + +  S   +L+DG 
Sbjct: 370 KAKQLPQASDIFNRMIDA-GCPPNTITYS---ALVDGL 403



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 125/304 (41%), Gaps = 36/304 (11%)

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  P     +AL+     AG+++  F + +E    G  +   +      A      W  A
Sbjct: 35  GYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDA 94

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           L + E  +  KL   + T   +I+ L +     + +  L  M+     PN +TY  LL  
Sbjct: 95  LVMIER-EDFKLDTVLCTQ--MISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTG 151

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRP 433
             +K  +     +++   ++G  PN  +F  ++   C +R Y  A  L + +   + G P
Sbjct: 152 FLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKLLKRMA--DCGCP 209

Query: 434 QIENKWTSLALMVYREAIVAG-TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADAL 492
                   +A  ++  +I  G  +P+ ++++             + E++ E +  S+  L
Sbjct: 210 P-----GYVAYNIFIGSICGGEELPSPDLLA-------------LAEKVYEEMLASSCVL 251

Query: 493 KR---SNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSF--KEIPVVVDARKLEIHTAK 547
            +   +N    + G G++D  AF +++     G VP  S   K I  + +A K+E    K
Sbjct: 252 NKVNTANFARCLCGMGKFD-MAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVE----K 306

Query: 548 VYLL 551
            +LL
Sbjct: 307 AFLL 310


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 163/379 (43%), Gaps = 65/379 (17%)

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ------ 119
            F N     + +K+  +  +  P    + +N+  S+     D+  A Q+L+ +Q      
Sbjct: 313 HFTNSGHVVEVVKDILKQLRWGPATEKTLYNLNFSI-----DAYQANQILKQLQDHSVAV 367

Query: 120 --------EAGLKADCKLYTTLITTCAKS---GKVDAMFENV-----KPDRVVFNALITA 163
                   + G   D   YTT++    ++   G ++ + E +     +P+ V +N LI +
Sbjct: 368 GFFCWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHS 427

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
            G++  +  A +V  +M  +    +PD +T   L+   A AG +D A  +Y+ + +  + 
Sbjct: 428 YGRANYLREALNVFNQM--QEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLS 485

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                Y++ INC  ++G+   A  ++ +M  +G +P+ V  + LI     A   + A E+
Sbjct: 486 PDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALEL 545

Query: 284 LQEAKNQGISVGIISYSSLM---GAC--------------------------------SN 308
            ++ +N G     ++YS +M   G C                                  
Sbjct: 546 YRDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGK 605

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           A N +KA E Y  M    L P V T N+L++A     +LP    +L +M +LGL P+  T
Sbjct: 606 AGNVEKAWEWYHTMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQT 665

Query: 369 YSILLVAC-ERKDDVEVGL 386
           Y++LL  C E +   ++G 
Sbjct: 666 YTLLLSCCTEAQSPYDMGF 684



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 127/284 (44%), Gaps = 46/284 (16%)

Query: 19  ANYAHDVSEQLHSYNRLIRQG----RISECIDLLEDMERKGLLDM--------------- 59
           ANY   + E L+ +N++   G    R++ C  L++   + G LD+               
Sbjct: 431 ANY---LREALNVFNQMQEMGCEPDRVTYCT-LIDIHAKAGFLDVAMSMYERMQEVGLSP 486

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVL 115
           D   ++   N       +  A R F ++V     P + T+N+L+++ A +++ + A ++ 
Sbjct: 487 DTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELY 546

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSG---KVDAMFENVK-----PDRVVFNALITACGQS 167
           R +Q AG K D   Y+ ++      G   + +A+F  ++     PD  V+  L+   G++
Sbjct: 547 RDMQNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKA 606

Query: 168 GAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           G V++A++    M  A + P  P   T  +L+ A     ++  A  + + +    +  + 
Sbjct: 607 GNVEKAWEWYHTMLRAGLLPNVP---TCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSL 663

Query: 227 EVYTIAINCCSQTG---DWEFACSVYDDMTKKGVIPDEVFLSAL 267
           + YT+ ++CC++     D  F C +   M   G  P   FL ++
Sbjct: 664 QTYTLLLSCCTEAQSPYDMGFCCEL---MAVSG-HPAHAFLQSM 703


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 141/311 (45%), Gaps = 14/311 (4%)

Query: 115 LRLVQEAGLKA---DCKLYTTLITTCAKSGKVD---AMFENVK-----PDRVVFNALITA 163
           LRL+ E  ++    D + +TT++   ++ GK +    MFE ++     P  V +N ++  
Sbjct: 194 LRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDV 253

Query: 164 CGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
            G+ G + ++   +L EM +  + ++ D  T   ++ AC   G +D AR+ +  +     
Sbjct: 254 YGKMGRSWNKILGLLDEMRS--NGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGY 311

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
                 Y   +    + G +  A S+  +M K    PD V  + L+     AG  E   +
Sbjct: 312 VAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGAD 371

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
            +     +GI    I+Y++++ A   A    KAL  +  MK     P V T NA++  L 
Sbjct: 372 FIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLG 431

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
              +L + +++L DM+S G  PN++T++ +L  C  K   +    +  + K  G  PN  
Sbjct: 432 KKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRD 491

Query: 403 MFKCIIGMCSR 413
            F  +IG   R
Sbjct: 492 TFNALIGAYGR 502



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 168/395 (42%), Gaps = 55/395 (13%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121
           + HA +  + K ++AI    +  K   +PTL T+N+++ V      S    ++L L+ E 
Sbjct: 215 ILHA-YSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWN--KILGLLDEM 271

Query: 122 ---GLKADCKLYTTLITTCAKSGKVD---AMFENVKPDRVV-----FNALITACGQSGAV 170
              GL+ D    +T+I+ C + G +D     F  +K +  V     +N+L+   G++G  
Sbjct: 272 RSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIY 331

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
             A  +L EM     P  PD +T   L+ A   AG  +   +    + +  I      YT
Sbjct: 332 SEALSILKEMEKNNCP--PDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYT 389

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             IN   + G  + A S +  M + G +P+    +A++   G   ++E   ++L + ++ 
Sbjct: 390 TVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSN 449

Query: 291 GISVGIISYSSLMGACSNAKNWQK------------------------------------ 314
           G +   +++++++  C N K   K                                    
Sbjct: 450 GCAPNSVTWNTMLAMCGN-KGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQID 508

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
            +++YE M      P V+T NAL+ AL           V+ DMKS G  PN  +YS++L 
Sbjct: 509 VVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLML- 567

Query: 375 ACERKDDVEVGLMLLSQAKEDG-VIPNLVMFKCII 408
            C  K     G+  + +   +G + P+ ++ + ++
Sbjct: 568 NCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLV 602



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 119/267 (44%), Gaps = 3/267 (1%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           N K D  +   ++   G+      A  +L E++ E + +D    T   ++ A +  G+ +
Sbjct: 169 NEKIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWT--TILHAYSRIGKYE 226

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSAL 267
           RA  +++ + K  +  T   Y + ++   + G  W     + D+M   G+  DE   S +
Sbjct: 227 RAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTV 286

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I   G  G ++ A +     K++G   G  +Y+SL+     A  + +AL + + M+    
Sbjct: 287 ISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNC 346

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P + T N L+ A        +  + +  M   G+ PN ITY+ ++ A  +    +  L 
Sbjct: 347 PPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALS 406

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSRR 414
              Q KE G +PN+  +  I+GM  ++
Sbjct: 407 FFRQMKESGCVPNVCTYNAILGMLGKK 433



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 94/443 (21%), Positives = 175/443 (39%), Gaps = 56/443 (12%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +YN L+    R G   E  D ++ M RKG++     Y        K+ K  K A  FF
Sbjct: 350 LVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDK-ALSFF 408

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + +      P + T+N ++ +       E    +L  ++  G   +   + T++  C   
Sbjct: 409 RQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNK 468

Query: 141 GK---VDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G    V+ +F  +K     P+R  FNALI A G+ G+      +  EM        P   
Sbjct: 469 GMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKA--GFTPCVT 526

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD----------- 241
           T  AL+ A A  G  + A  V   +     K     Y++ +NC ++ G+           
Sbjct: 527 TYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEI 586

Query: 242 --------WEFACSV----------------YDDMTKKGVIPDEVFLSALIDFAGHAGKV 277
                   W    ++                + +  K G  PD V  ++++         
Sbjct: 587 YNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMY 646

Query: 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
           + A E+L+  +  G+   +++Y+SLM   +      K  E+ + ++    KP + + N +
Sbjct: 647 DRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTV 706

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           I   C    + + +  LS+M   G+ P  +TY+  +     K        ++S   +   
Sbjct: 707 IKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDC 766

Query: 398 IPNLVMFKCII-GMC-SRRYEKA 418
            PN + +K ++ G C  ++Y++A
Sbjct: 767 RPNELTYKIVVDGYCKGKKYKEA 789



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 120/282 (42%), Gaps = 16/282 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG------KV 143
           P ++T+N L++  A   D E A  V+  ++  G K +   Y+ ++   AK G      K+
Sbjct: 523 PCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKI 582

Query: 144 DAMFEN--VKPDRVVFNALITACGQSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALM 198
           +    N  + P  ++   L+ A  +  A+   +RAF    +     H   PD +   +++
Sbjct: 583 EEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCK-----HGYKPDLVLFNSML 637

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              A     DRA E+ ++I +  ++     Y   ++  ++ G+      +   + K G  
Sbjct: 638 SIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGK 697

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD V  + +I      G ++ A   L E    GI   I++Y++ +   S    + +  E+
Sbjct: 698 PDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEV 757

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
             +M     +P   T   ++   C G +  + M+ +S++  +
Sbjct: 758 ISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDFVSNITEM 799



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 114/272 (41%), Gaps = 32/272 (11%)

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFEILQEA 287
           +T  ++  S+ G +E A ++++ M K G+ P  V  + ++D  G  G+       +L E 
Sbjct: 212 WTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEM 271

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           ++ G+     + S+++ AC       +A + +  +KS        T N+L+         
Sbjct: 272 RSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIY 331

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            + + +L +M+     P+ +TY+ L+ A  R    E G   +      G++PN + +  +
Sbjct: 332 SEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTV 391

Query: 408 IGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLG 467
           I                      G+   E+K    AL  +R+   +G +P V   + +LG
Sbjct: 392 INA-------------------YGKAGKEDK----ALSFFRQMKESGCVPNVCTYNAILG 428

Query: 468 CLQLPYNADIRERLVENLGVSADALKRSNLCS 499
            L        + RL E + +  D   RSN C+
Sbjct: 429 ML------GKKSRLEEMIDMLCDM--RSNGCA 452


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 165/375 (44%), Gaps = 48/375 (12%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T+N+L+     +   +GA ++L  +   G + D   YTT+I++ +K GKV+   E 
Sbjct: 182 PNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEAREL 241

Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
               +P+  V+NALI    +   V   F +L +M  +   +DP+ IT   ++ + +  G 
Sbjct: 242 SIRFQPNVSVYNALINGFCREYKVKEVFLLLGQMVEK--GIDPNVITYSTVISSLSGIGN 299

Query: 207 VDRAREVYKMIHKYNIKG-TPEVYTI---------------AINCCSQTGDWEF------ 244
           V+ A  V+    K  ++G +P VYT                A+N  ++  +  F      
Sbjct: 300 VELALAVWA---KMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVA 356

Query: 245 ----------------ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
                           A SV   M + G  P+     ALID    AG +  A EI  +  
Sbjct: 357 YNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMM 416

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
             G    ++ Y+S++     +  + +A  L E M +    P   T N  I  LC   ++ 
Sbjct: 417 TNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVE 476

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             + +   M+  G  PN  TY+ +L    +++ ++  L L+++ +E G+  NLV +  I 
Sbjct: 477 CAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIF 536

Query: 409 -GMCS-RRYEKARTL 421
            G C+  ++E+A  L
Sbjct: 537 GGFCNVGKFEEALKL 551



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/447 (21%), Positives = 186/447 (41%), Gaps = 56/447 (12%)

Query: 18  HANYAHDVSE-QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           ++N   D  E  +++YN L++      R+     LL +M  KG  + D V +    +   
Sbjct: 172 YSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGC-EPDVVSYTTVISSMS 230

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
               ++EA R   +   P +S +N L++  C   K  E  F +L  + E G+  +   Y+
Sbjct: 231 KLGKVEEA-RELSIRFQPNVSVYNALINGFCREYKVKE-VFLLLGQMVEKGIDPNVITYS 288

Query: 132 TLITTCAKSGKVD-------AMF------------------------------------E 148
           T+I++ +  G V+        MF                                    E
Sbjct: 289 TVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEE 348

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
             +P+ V +N LI      G +  A  V ++M  E +   P+  T GAL+   A AG + 
Sbjct: 349 GFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKM--ERNGCSPNVSTYGALIDGFAKAGDLV 406

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A E++  +          VYT  +N   ++  +  A S+ + M+     P+ V  +  I
Sbjct: 407 GASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFI 466

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                +G+VE A  +  + +  G S  I +Y+ ++         ++ALEL   M+   ++
Sbjct: 467 KGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGME 526

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
             + T N +    C+  +  + +++L  M   G+ P+ ITY+ L  A   +  V+  + L
Sbjct: 527 LNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQL 586

Query: 389 LSQAKEDG-VIPNLVMFKCII-GMCSR 413
           L +    G  +P +  +  ++ G+C++
Sbjct: 587 LDKLSAGGKWVPEVAAYTSLLWGICNQ 613



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/255 (21%), Positives = 117/255 (45%), Gaps = 7/255 (2%)

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
           ++ +  +I   G+   VD    +L +M  E      D      ++      G  ++A ++
Sbjct: 79  QLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFI--NVINTYRRVGLAEQALKM 136

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           +  I ++  + T ++Y   ++       ++    +Y +M + G  P+    + L+     
Sbjct: 137 FYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCK 196

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
             +V+ A ++L E  N+G    ++SY++++ + S     ++A EL     SI+ +P VS 
Sbjct: 197 NNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEAREL-----SIRFQPNVSV 251

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            NALI   C   ++ +   +L  M   G+ PN ITYS ++ +     +VE+ L + ++  
Sbjct: 252 YNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMF 311

Query: 394 EDGVIPNLVMFKCII 408
             G  PN+  F  ++
Sbjct: 312 VRGCSPNVYTFTSLM 326



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 132/294 (44%), Gaps = 13/294 (4%)

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
           P +  +N L+  +C+  K  E A  V   ++  G   +   Y  LI   AK+G +     
Sbjct: 352 PNVVAYNTLIHGLCSHGKMGE-AVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASE 410

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                M     P+ VV+ +++    +S    +A+ ++ +M+ +  P  P+ +T    +K 
Sbjct: 411 IWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCP--PNTVTFNTFIKG 468

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              +G+V+ A  ++  + +Y      + Y   ++   +    + A  +  +M +KG+  +
Sbjct: 469 LCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELN 528

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + +     + GK E A ++L +    G+    I+Y++L  A       + A++L +
Sbjct: 529 LVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLD 588

Query: 321 HMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            + +  K  P V+   +L+  +C+   + + +  L  M + G+C N  T++ L+
Sbjct: 589 KLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALV 642



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/261 (20%), Positives = 110/261 (42%), Gaps = 31/261 (11%)

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
           T   Y I I    +  D +    +   M  +G+   E     +I+     G  E A ++ 
Sbjct: 78  TQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMF 137

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
              +  G    +  Y+ L+ A  +   +Q    +Y +MK    +P V T N L+ ALC  
Sbjct: 138 YRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKN 197

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV--IPNLV 402
           +++    ++L +M + G  P+ ++Y+ ++ +  +   VE       +A+E  +   PN+ 
Sbjct: 198 NRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVE-------EARELSIRFQPNVS 250

Query: 403 MFKCIIGMCSRRYEKA-----------RTLNEHVLSFN------SGRPQIENKWTSLALM 445
           ++  +I    R Y+             + ++ +V++++      SG   +E     LAL 
Sbjct: 251 VYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVE-----LALA 305

Query: 446 VYREAIVAGTIPTVEVVSKVL 466
           V+ +  V G  P V   + ++
Sbjct: 306 VWAKMFVRGCSPNVYTFTSLM 326


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/350 (22%), Positives = 158/350 (45%), Gaps = 16/350 (4%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM- 146
           P PT +T+N L+       D   A + L L+  +G + D   + +LI    ++ +++   
Sbjct: 125 PAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAH 184

Query: 147 -------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                  F     D V + ALI    ++G +D A ++  EM        PD  T  AL+K
Sbjct: 185 DLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMT------QPDMYTHAALVK 238

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              +AG+ +    + + + +   + T   Y   ++   +    E A  + ++M   G++P
Sbjct: 239 GLCDAGRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMP 298

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
             V  + +++     G++  A  + +  + +G    + +Y++++    NA    KA+ L 
Sbjct: 299 CVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALL 358

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M+   ++P V T N LI   C    +     +L  M+  GL  +  TY++L+ A  + 
Sbjct: 359 DQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKT 418

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLS 427
             V+    L    +  G+ PN V F  +I G+C + +++ A T  E+++S
Sbjct: 419 GKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMIS 468



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 137/309 (44%), Gaps = 15/309 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFKLVPN 89
           N   R+GR+S  + + E M  KG       Y+A    F N  K  KA+    +  +    
Sbjct: 308 NAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVE 367

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--- 146
           P + T+N+L+           AF++LRL++  GL AD   Y  LI    K+GKVD     
Sbjct: 368 PDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSL 427

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK-A 200
                +  ++P+ V FN +I    ++G  D A   L  M +  +   PD  T    ++  
Sbjct: 428 FDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYA--PDTYTYSPFIENL 485

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           C   G  +    + +M+ K ++K +   YTI IN      ++  A  ++  M  +G  PD
Sbjct: 486 CKTKGSQEGLFFIDEMLQK-DVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPD 544

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  +  +    + G+++ A  ++ E K     V  ++Y++L+   ++     +A+ + +
Sbjct: 545 VVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILK 604

Query: 321 HMKSIKLKP 329
           HM  +   P
Sbjct: 605 HMTGVASMP 613



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 160/395 (40%), Gaps = 44/395 (11%)

Query: 7   NMLQFPYPNGKHANYAHDV---------SEQLHSYNRLIR----QGRISECIDLLEDMER 53
           N L   Y   +    AHD+         S+   SY  LI      GRI E ++L  +M +
Sbjct: 168 NSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ 227

Query: 54  ----------KGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
                     KGL D  +        +C  QK  +  +R       PT   +  L+ +  
Sbjct: 228 PDMYTHAALVKGLCDAGRGEEG----LCMLQKMKELGWR-------PTTRAYAALVDLWC 276

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--------FENVKPDRV 155
             + +E A ++L  + ++GL       T ++    + G++           F+  +P+  
Sbjct: 277 REQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVW 336

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
            +NA++     +G V +A  +L +M      V+PD +T   L++     G +  A  + +
Sbjct: 337 TYNAIVQGFCNAGKVYKAMALLDQMRE--CGVEPDVVTYNLLIRGQCIDGHIGSAFRLLR 394

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
           ++    +      Y + I+   +TG  + ACS++D +  +G+ P+ V  + +I+    AG
Sbjct: 395 LMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAG 454

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           K + A   L+   + G +    +YS  +      K  Q+ L   + M    +KP+     
Sbjct: 455 KFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYT 514

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            +I  L +         +   M S G  P+ +TY+
Sbjct: 515 IVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYT 549



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 86/381 (22%), Positives = 134/381 (35%), Gaps = 35/381 (9%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + +YN LIR     G I     LL  ME  GL      Y+     +CK+ K + EA
Sbjct: 366 VEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGK-VDEA 424

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F  +      P   TFN +++    +   + A   L  +  AG   D   Y+  I  
Sbjct: 425 CSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIEN 484

Query: 137 -CAKSGKVDAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
            C   G  + +F       ++VKP  V +  +I           A  +  +M ++     
Sbjct: 485 LCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQ--GCS 542

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PD +T    ++A  N G++D A  V   + K         Y   I+  +  G  + A ++
Sbjct: 543 PDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTI 602

Query: 249 YDDMTKKGVIPDEVFL------SALIDFAGHA--------GKVEAA--FEILQEAKNQGI 292
              MT    +P+                A H           +E A  FE+ +  K   +
Sbjct: 603 LKHMTGVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTIELADVFELFELMKKNSV 662

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
                +Y S++   S  +   +   L   MK   L       NAL+   C          
Sbjct: 663 PSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAWA 722

Query: 353 VLSDMKSLGLCPNTITYSILL 373
           +L  M   G  PN I Y  LL
Sbjct: 723 LLCSMIGHGFLPNLIFYQYLL 743


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 184/402 (45%), Gaps = 26/402 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRF 83
           +YN LI    R+G + E   LL     +G+      Y+A  + +CK     +A       
Sbjct: 294 TYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEM 353

Query: 84  FKLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            +L   P  +T+N +L+ +C      E A ++   +   G+  D   +++LI   A++G 
Sbjct: 354 LQLGLTPNAATYNTLLVEICRRDNILE-AQEIFDEMSRRGVLPDLVSFSSLIGVLARNGH 412

Query: 143 VDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +     + +        PD V++  LI    ++GA+  A  +  EM A    +D   +T 
Sbjct: 413 LYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDV--VTY 470

Query: 195 GALMKA-CANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDD 251
              +   C      D      +M+ +  +   P+ YT    I    + G+ + A ++++ 
Sbjct: 471 NTFLNGLCKKKMFADADMLFNEMVERGMV---PDFYTFTTLIRGYCKDGNMDKALNLFEA 527

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M +  + PD+V  + LID    AG++  A E+  +   + I    ISY +++    ++  
Sbjct: 528 MVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGL 587

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +AL L + M    ++P + T N LI   C    +PK  E LS M S G+ P++ +Y+ 
Sbjct: 588 LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNT 647

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
           L+    ++ ++E   +L+++ ++ G+  N++ +  I+ G C+
Sbjct: 648 LIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCA 689



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 104/443 (23%), Positives = 196/443 (44%), Gaps = 49/443 (11%)

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQS 167
           SE    +LR+V+++G+ +  K+  +LI+TC   G V           ++++ L+    Q+
Sbjct: 152 SEAQACILRMVRKSGV-SRVKVVESLISTCFYFGSVG----------LIYDLLVRTYVQA 200

Query: 168 GAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
             +     AF +L      V  ++  +  +G L++     G VD A E+Y  + +  I+ 
Sbjct: 201 KKLREGSEAFQILRRKGVSV-SINACNKLLGGLVRT----GWVDLAWEIYGEVVRGGIEL 255

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
                 I +N   +   +E       DM  KGV  D V  + LI+     G VE AF++L
Sbjct: 256 NVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLL 315

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
               ++G+  G+++Y++++        + +A ++   M  + L P  +T N L+  +C  
Sbjct: 316 NSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRR 375

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           D + +  E+  +M   G+ P+ +++S L+    R   +   LM   + +  G++P+ V++
Sbjct: 376 DNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIY 435

Query: 405 KCII-GMCS----------RRYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIV 452
             +I G C           R    AR     V+++N+    + + K  + A M++ E + 
Sbjct: 436 TILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVE 495

Query: 453 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL-------CSLIDGF- 504
            G +P     + ++       N D    L E       A+ R+NL        +LIDGF 
Sbjct: 496 RGMVPDFYTFTTLIRGYCKDGNMDKALNLFE-------AMVRTNLKPDKVTYNTLIDGFC 548

Query: 505 --GEYDPRAFSLLEEAASFGIVP 525
             GE   RA  L ++     I+P
Sbjct: 549 KAGEMG-RAKELWDDMIRKDIIP 570



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 169/386 (43%), Gaps = 19/386 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R+  I E  ++ ++M R+G+L  D V  +    V      + +A   F+ 
Sbjct: 364 TYNTLLVEICRRDNILEAQEIFDEMSRRGVLP-DLVSFSSLIGVLARNGHLYQALMHFRE 422

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQ-VLRLVQEA---GLKADCKLYTTLIT-TCAKSG 141
           +    +   N++ ++        GA    L++  E    G   D   Y T +   C K  
Sbjct: 423 MERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKM 482

Query: 142 KVDA------MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
             DA      M E  + PD   F  LI    + G +D+A ++   M      + PD +T 
Sbjct: 483 FADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRT--NLKPDKVTY 540

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+     AG++ RA+E++  + + +I      Y   +N    +G    A ++ D M +
Sbjct: 541 NTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLE 600

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           KG+ P+ V  + LI     +G +  A+E L +  + GI     SY++L+       N +K
Sbjct: 601 KGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEK 660

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A  L   M+   L+  + T N ++   C   ++ +  +VL  M  +G+ P+  TYS L+ 
Sbjct: 661 AFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN 720

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPN 400
               +D+++       +  + G++P+
Sbjct: 721 GHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 145/363 (39%), Gaps = 48/363 (13%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           T N++++     +  E     L  ++  G+ AD   Y TLI    + G V+  F+     
Sbjct: 259 TLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSF 318

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               ++P  + +NA++    + G  DRA DVL EM      + P+  T   L+       
Sbjct: 319 SSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQ--LGLTPNAATYNTLLVEICRRD 376

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +  A+E++  + +  +      ++  I   ++ G    A   + +M + G++PD V  +
Sbjct: 377 NILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYT 436

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---------------------- 303
            LID     G +  A ++  E   +G  + +++Y++ +                      
Sbjct: 437 ILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVER 496

Query: 304 --------------GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
                         G C +  N  KAL L+E M    LKP   T N LI   C   ++ +
Sbjct: 497 GMVPDFYTFTTLIRGYCKDG-NMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGR 555

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
             E+  DM    + P+ I+Y  +L        +   L L  Q  E G+ PNLV    +I 
Sbjct: 556 AKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIK 615

Query: 409 GMC 411
           G C
Sbjct: 616 GYC 618



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 107/252 (42%), Gaps = 21/252 (8%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-----QKAIKE 79
            +++  LIR     G + + ++L E M R  L      Y+      CK+      K + +
Sbjct: 502 FYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWD 561

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                 ++P+  +S   +L   C+S    E A  +   + E G++ +     TLI    +
Sbjct: 562 DMIRKDIIPDH-ISYGTVLNGFCSSGLLPE-ALNLCDQMLEKGIRPNLVTCNTLIKGYCR 619

Query: 140 SGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           SG +   +E         + PD   +N LI    +   +++AF ++ EM  E   +  + 
Sbjct: 620 SGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEM--EKRGLQFNI 677

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           IT   ++      G++  A +V + + +  I      Y+  IN      + + A   +D+
Sbjct: 678 ITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDE 737

Query: 252 MTKKGVIPDEVF 263
           M ++G++PD+ F
Sbjct: 738 MLQRGLVPDDRF 749


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 176/399 (44%), Gaps = 50/399 (12%)

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLR 116
           ++ Y      +C+  +  K      KLV N   P+  ++N+L++      D + A     
Sbjct: 325 ERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTE 384

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVD-------AMFEN-VKPDRVVFNALITACGQSG 168
            ++E GL+ +   + T+I+   ++G+VD        M E  V P    +N+LI   GQ G
Sbjct: 385 QMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKG 444

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHKYNIKGTPE 227
              R F+ L EM+     + P+ I+ G+L+   C +   +D    +  MI +  +    E
Sbjct: 445 HFVRCFEFLDEMDKA--GIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGR-GVSPNAE 501

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           +Y + I         + A   +D+M + G+    V  + LI+  G  G+V+ A ++  + 
Sbjct: 502 IYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQM 561

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA------- 340
             +G +  +I+Y+SL+   + + N QK LELY+ MK + +KPTV T + LI A       
Sbjct: 562 AGKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEGVV 621

Query: 341 --------LCDGDQLP-------------------KTMEVLSDMKSLGLCPNTITYSILL 373
                   +   D +P                   K M +   M   G+  + +TY+ L+
Sbjct: 622 TMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLI 681

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           +A  R   V     L+   K  G++P +  +  +I G+C
Sbjct: 682 LAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLC 720



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 140/326 (42%), Gaps = 37/326 (11%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  + +YN LI    ++G    C + L++M++ G+      Y +    +CK +K I   
Sbjct: 426 VSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAE 485

Query: 81  FRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                ++    +P    +NML+    S    + AF+    + ++G+ A      TL+T  
Sbjct: 486 IVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDA------TLVT-- 537

Query: 138 AKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
                              +N LI   G++G V +A D+  +M  +    +PD IT  +L
Sbjct: 538 -------------------YNTLINGLGRNGRVKKAEDLFLQMAGK--GCNPDVITYNSL 576

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +   A +    +  E+Y  +    IK T   +   I  C + G       ++ +M +  +
Sbjct: 577 ISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEGVVTMD-KMFQEMLQMDL 635

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
           +PD+   + +I      G V  A  + Q+  +QG+    ++Y+SL+ A    +   +   
Sbjct: 636 VPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKH 695

Query: 318 LYEHMKSIKLKPTVSTMNALITALCD 343
           L + MK+  L P V T N LI  LCD
Sbjct: 696 LVDDMKAKGLVPKVDTYNILIKGLCD 721



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 114/518 (22%), Positives = 213/518 (41%), Gaps = 65/518 (12%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT----LSTF 95
           RI +   L ++M ++ ++     Y+      CK    I+EA  F + +        L T+
Sbjct: 207 RIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKV-GGIEEALGFKERMKEQNVECNLVTY 265

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAG----------------------------LKADC 127
           N L++    S   + A +VL  ++ +G                            ++ D 
Sbjct: 266 NSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDE 325

Query: 128 KLYTTLITTCAKSGKVDA-------MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAE 179
           + Y  L+    + G+++        + EN V P ++ +N L+ A  Q G V +A  +L  
Sbjct: 326 RTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKA--ILTT 383

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRARE-VYKMIHKYNIKGTPEVYTIAINCCSQ 238
              E   ++P+ IT   ++      G+VD A   V +M+ K  +  T E Y   IN   Q
Sbjct: 384 EQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEK-GVSPTVETYNSLINGYGQ 442

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G +       D+M K G+ P+ +   +LI+      K+  A  +L +   +G+S     
Sbjct: 443 KGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEI 502

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y+ L+ A  +    + A   ++ M    +  T+ T N LI  L    ++ K  ++   M 
Sbjct: 503 YNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMA 562

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
             G  P+ ITY+ L+    +  + +  L L  + K  G+ P +  F  +I  C  R E  
Sbjct: 563 GKGCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYAC--RKEGV 620

Query: 419 RTLN---EHVLSFNSGRPQ-IENKWTSLALMVYREAIVAGTIPTV----EVVSKVLGCLQ 470
            T++   + +L  +    Q + N+      M+Y  A     +  +    ++V + + C +
Sbjct: 621 VTMDKMFQEMLQMDLVPDQFVYNE------MIYSYAEDGNVMKAMSLHQQMVDQGVDCDK 674

Query: 471 LPYN----ADIRERLVENLGVSADALKRSNLCSLIDGF 504
           + YN    A +R+R V  +    D +K   L   +D +
Sbjct: 675 VTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTY 712



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 148/331 (44%), Gaps = 21/331 (6%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---GKV 143
           V  P  S  + L+ +C+ SK  + A  +   +++ G     +    L+ T   S    K 
Sbjct: 84  VSKPFFS--DNLLWLCSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKT 141

Query: 144 DAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            A+F +V     +PD V +   + A      +D+ F+++  M  +   + P       ++
Sbjct: 142 LAVFADVIDSGTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKD--GMGPSVFAYNLVL 199

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                  ++  AR+++  + + N+      Y   I+   + G  E A    + M ++ V 
Sbjct: 200 GGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVE 259

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALE 317
            + V  ++L++    +G+V+ A E+L E +  G +  G +S+        +  N      
Sbjct: 260 CNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSF-----VFDDHSNGAGDDG 314

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L++  K I++     T   L+  LC   ++ K  EVL+ +   G+ P+ I+Y+IL+ A  
Sbjct: 315 LFDG-KEIRIDE--RTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYC 371

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ++ DV+  ++   Q +E G+ PN + F  +I
Sbjct: 372 QEGDVKKAILTTEQMEERGLEPNRITFNTVI 402



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 2/186 (1%)

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
           CS +   + A  +Y  M K G +P    ++ L+     +   E    +  +  + G    
Sbjct: 97  CSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRPD 156

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
            ++Y   + A    K+  K  EL + M    + P+V   N ++  LC   ++    ++  
Sbjct: 157 AVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFD 216

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SR 413
           +M    + PNT+TY+ L+    +   +E  L    + KE  V  NLV +  ++ G+C S 
Sbjct: 217 EMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSG 276

Query: 414 RYEKAR 419
           R + AR
Sbjct: 277 RVDDAR 282



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           +L+  CS +K   +A +LY  M+     P+  ++N L+  L D     KT+ V +D+   
Sbjct: 92  NLLWLCSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDS 151

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKA 418
           G  P+ + Y   + A     D++ G  L+    +DG+ P++  +  ++ G+C  RR + A
Sbjct: 152 GTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDA 211

Query: 419 RTLNEHVLSFN 429
           R L + ++  N
Sbjct: 212 RKLFDEMIQRN 222



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 85/202 (42%), Gaps = 6/202 (2%)

Query: 173 AFDVLAEMNAEV-HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
           AF  L+E++A V  P   D+     L+  C+ +  +D A ++Y  + K     +      
Sbjct: 73  AFSSLSELHAHVSKPFFSDN-----LLWLCSVSKMLDEATDLYSTMRKDGFVPSTRSVNR 127

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            +     +  +E   +V+ D+   G  PD V     +  A     ++  FE+++     G
Sbjct: 128 LLRTLVDSRHFEKTLAVFADVIDSGTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDG 187

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           +   + +Y+ ++G     +  + A +L++ M    + P   T N LI   C    + + +
Sbjct: 188 MGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEAL 247

Query: 352 EVLSDMKSLGLCPNTITYSILL 373
                MK   +  N +TY+ LL
Sbjct: 248 GFKERMKEQNVECNLVTYNSLL 269


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 151/347 (43%), Gaps = 42/347 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           +IR G+++   ++ ++M R+G+                                 PT+ T
Sbjct: 252 MIRSGKLASARNVFDEMLRRGV--------------------------------QPTVVT 279

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM--FE--- 148
           FN LMS    + D   A  +  L+ +AG+  D   Y   I    K+G++ DAM  FE   
Sbjct: 280 FNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMC 339

Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              + P+ VV   LI A  + G V    ++  EM      V  D +   AL+        
Sbjct: 340 ERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEM--ATRGVKADLVAYNALVNGFCRVRD 397

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           +  A ++ + + K  +K     YT  I+ C + G+ + A  +  +M+ +GV  D+V  +A
Sbjct: 398 MKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTA 457

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LI     AG+   A  IL E    G+     +Y+ ++ A     + +   +  + M++  
Sbjct: 458 LISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKG 517

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             P + T N ++   C   Q+     +L+ M ++G+CPN ITY+ILL
Sbjct: 518 KNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILL 564



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 129/301 (42%), Gaps = 42/301 (13%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V P+   FN L+    +SG +  A +V  EM      V P  +T   LM     A  ++ 
Sbjct: 238 VPPEARQFNMLMRDMIRSGKLASARNVFDEMLRR--GVQPTVVTFNTLMSGMCKASDLNN 295

Query: 210 AREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           A  +  ++ K  I   P+VYT    I    +TG  + A  ++++M ++G+ P+ V L+ L
Sbjct: 296 ANALRGLMAKAGI--APDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTL 353

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ID     G V A  E+  E   +G+   +++Y++L+      ++ + A ++ E M+   L
Sbjct: 354 IDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGL 413

Query: 328 KPTVSTMNALITALCDGDQLPKTME----------------------------------- 352
           KP   T   LI   C   +L   ME                                   
Sbjct: 414 KPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAER 473

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           +L +M   GL P+  TY++++ A  +  DV+ G   L + +  G  P +V +  ++ G C
Sbjct: 474 ILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFC 533

Query: 412 S 412
           S
Sbjct: 534 S 534



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 105/227 (46%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           V P+      LM+    +G++  AR V+  + +  ++ T   +   ++   +  D   A 
Sbjct: 238 VPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNAN 297

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           ++   M K G+ PD     A I      G+++ A E+ +E   +G++   +  ++L+ A 
Sbjct: 298 ALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAH 357

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
               +    LEL   M +  +K  +   NAL+   C    +    +++ +M+  GL P+ 
Sbjct: 358 CKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDK 417

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +TY+ L+  C ++ +++  + +  +  ++GV  + V +  +I   S+
Sbjct: 418 VTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSK 464



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 1/175 (0%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A + Y  +   GV P+    + L+     +GK+ +A  +  E   +G+   ++++++LM 
Sbjct: 226 AYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMS 285

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
               A +   A  L   M    + P V T  A I  LC   ++   ME+  +M   GL P
Sbjct: 286 GMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNP 345

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKA 418
           NT+  + L+ A  ++ DV  GL L  +    GV  +LV +  ++ G C  R  KA
Sbjct: 346 NTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKA 400



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 82/179 (45%)

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           ++G    A +V+D+M ++GV P  V  + L+     A  +  A  +       GI+  + 
Sbjct: 254 RSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVY 313

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +Y + +         Q A+E++E M    L P    +  LI A C    +   +E+  +M
Sbjct: 314 TYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEM 373

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
            + G+  + + Y+ L+    R  D++    ++ + ++DG+ P+ V +  +I  C +  E
Sbjct: 374 ATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGE 432



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 35/196 (17%), Positives = 71/196 (36%), Gaps = 13/196 (6%)

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-------------EVFLSALIDFAG 272
           P +  + ++  S         +V      +G++PD              V + A  D   
Sbjct: 159 PRLLPLLVSAASTDDPAPLVSAVAKVYADEGLLPDGCSLLLLALRRGIRVPMPAWSDLMN 218

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
               V  A+       + G+      ++ LM     +     A  +++ M    ++PTV 
Sbjct: 219 RLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVV 278

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N L++ +C    L     +   M   G+ P+  TY   +    +   ++  + +  + 
Sbjct: 279 TFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEM 338

Query: 393 KEDGVIPNLVMFKCII 408
            E G+ PN V+   +I
Sbjct: 339 CERGLNPNTVVLTTLI 354


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 142/310 (45%), Gaps = 12/310 (3%)

Query: 122 GLKADCKLYTTLITTCAKSGKV-------DAMFEN-VKPDRVVFNALITACGQSGAVDRA 173
           G K +   Y  +I +  K+G V       D M +  ++PD +++N ++   G++  +D A
Sbjct: 44  GSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEA 103

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
             + A M +   P D    T   L+++     + + A  ++  + +     +   YT  I
Sbjct: 104 CKLFASMKSMGCPAD--DYTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVI 161

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           +   + G  E A  V   M  K + PD+  L++LI      G+ E A EI +  K  G++
Sbjct: 162 DIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVA 221

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
           V  +S+++++  C  A     A +  + M++  +KP   T N LI  L       +  +V
Sbjct: 222 VNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKV 281

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           L +M+S GL P+  TY+ ++ A  +  ++     +    ++ G   N+V +  +I    +
Sbjct: 282 LQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVK 341

Query: 414 --RYEKARTL 421
             RY+ AR +
Sbjct: 342 AGRYQDARDI 351



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 159/347 (45%), Gaps = 13/347 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           R  RI + +D  +++++ G       Y     ++ K+   +       K++     P   
Sbjct: 26  RSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTL 85

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT---CAKSGKVDAMFENV 150
            +N+++     +   + A ++   ++  G  AD   Y  LI +   C +  +   +F+ +
Sbjct: 86  LYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRCKRDEEATLLFDEM 145

Query: 151 K-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           +     P    +  +I    ++G ++ A  VL +M  +   + PD  T+ +L+ A +  G
Sbjct: 146 EERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDK--NLAPDDYTLNSLITAVSRTG 203

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           + + A E+++ + K  +      +   ++CC + G    A    D+M  +G+ P+ +  +
Sbjct: 204 RTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFN 263

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LI+  G A     A+++LQE ++ G++  + +Y+ ++ A + A N  KA E++  M+  
Sbjct: 264 TLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGNMGKAFEMFGDMEKA 323

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
                V T N LI AL    +     ++  DMK  G+ P+ IT ++L
Sbjct: 324 GCSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPDAITATVL 370



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 121/259 (46%), Gaps = 19/259 (7%)

Query: 30  HSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++Y  LIR      R  E   L ++ME +G       Y       CK+ + I+ A    K
Sbjct: 120 YTYAILIRSLGRCKRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGR-IESAMVVLK 178

Query: 86  LVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            + +  L+    T N L++  + +  +E A ++   ++++G+  +   +  ++  C K+G
Sbjct: 179 KMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAG 238

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           KV   ++         +KP+ + FN LI   G++     A+ VL EM +    + PD  T
Sbjct: 239 KVGLAYQFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSA--GLTPDVFT 296

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              +++A A AG + +A E++  + K         Y + I+   + G ++ A  +Y DM 
Sbjct: 297 YTCMIEAFAKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGRYQDARDIYFDMK 356

Query: 254 KKGVIPDEVFLSALIDFAG 272
           KKG++PD +  + L   AG
Sbjct: 357 KKGILPDAITATVLQQLAG 375



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 116/259 (44%), Gaps = 2/259 (0%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           +V NA+I A G+S  + +  D   E++   H   P+  T   ++++   AG V  A +  
Sbjct: 15  LVSNAVIAAYGRSSRIHKVMDEFQELDK--HGSKPNAYTYKCVIQSLVKAGNVVLAMDFL 72

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             + K  ++    +Y + ++   +    + AC ++  M   G   D+   + LI   G  
Sbjct: 73  DKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGCPADDYTYAILIRSLGRC 132

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
            + E A  +  E + +G +    +Y++++     A   + A+ + + M    L P   T+
Sbjct: 133 KRDEEATLLFDEMEERGCTPSAPAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTL 192

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N+LITA+    +     E+   MK  G+  NT++++ +L  C +   V +    + + + 
Sbjct: 193 NSLITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEA 252

Query: 395 DGVIPNLVMFKCIIGMCSR 413
            G+ PN + F  +I    R
Sbjct: 253 RGIKPNSITFNTLINCLGR 271


>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
 gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
          Length = 491

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 154/352 (43%), Gaps = 25/352 (7%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           PT  TF ++    AS+     A +V   + + G   D + + T++    KS +V+  +  
Sbjct: 134 PTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNL 193

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                   + D V +N ++         ++A ++L EM      + P+  +   ++K   
Sbjct: 194 FKVFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKR--GLTPNLTSYNTMLKGYF 251

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AGQ++ A + +  + K + +     YT  I+     G+ + A  V+D M KKGV+P   
Sbjct: 252 RAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVA 311

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +A I        V+ A  I +E   +G     I+Y+ ++    +    ++A+E    M
Sbjct: 312 TYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRM 371

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC---ERK 379
           K    +P V T N +I   CD  ++ K +++   M S    PN  TY+IL+ A    ++ 
Sbjct: 372 KDDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKS 431

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 431
           DD+ V   LL +  + G +P             R++   R LN  +L+ N G
Sbjct: 432 DDLLVAGNLLIEMVDRGFVP-------------RKFTFNRVLNGLLLTGNQG 470



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 81/197 (41%), Gaps = 10/197 (5%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           ++ KA++      K    P L+++N ++     +     A+     +++   + D   YT
Sbjct: 220 RTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYT 279

Query: 132 TLITTCAKSGKV-------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           T+I     +G++       D M +  V P    +NA I    +   VD A  +  EM   
Sbjct: 280 TVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEM--V 337

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
           V    P+ IT   +++   + G+++RA E    +     +   + Y + I      G+ +
Sbjct: 338 VKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEID 397

Query: 244 FACSVYDDMTKKGVIPD 260
            A  ++  MT    +P+
Sbjct: 398 KALDLFQKMTSGDCLPN 414


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 106/446 (23%), Positives = 199/446 (44%), Gaps = 75/446 (16%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARF-FNV-----CKS 73
           + S  + +YN L+    R G++   + L ++M       +D+  H    FN+     C++
Sbjct: 40  ECSPSMVTYNTLLDGLFRTGKLERAMALFQEM-------LDRRSHDVISFNILVTGLCRA 92

Query: 74  QKAIKEAFRFFKLVPN---PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
            K I+ A  FF+ + +   P + T+++L+  +C +++ S+ A ++L  ++  G   D   
Sbjct: 93  GK-IETALEFFRKMDDRCSPNVITYSVLIDGLCKANRVSQ-AVELLESMKARGCSPDVIT 150

Query: 130 YTTLITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           YT L+    K  KV A +E ++        P+ V +N+L+    ++  V  A  ++ +M 
Sbjct: 151 YTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMT 210

Query: 182 AEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPE--VYTIAIN--CC 236
                  P+ +T G L+      G+V D    +  MI K    GTP+  +Y + IN  C 
Sbjct: 211 C--RGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDK---GGTPDLMIYNMLINGLCK 265

Query: 237 SQTGD---------------------------------WEFACSVYDDMTKKGVIPDEVF 263
           +   D                                  + AC +   +  +G  PD + 
Sbjct: 266 ADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVIL 325

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            S LID    AGKV+ AF++ +     G    +++YS+L+     A    +A  L   M 
Sbjct: 326 YSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMV 385

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
            +   P+  T N+LI  LCD + L + +E++ +M+     P+ +TY+IL+    R + V+
Sbjct: 386 RMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVD 445

Query: 384 -VGLMLLSQAKEDGVIPNLVMFKCII 408
              L    +  ++GVIP+ + +  ++
Sbjct: 446 SAALDYFQEMIDNGVIPDHITYSILL 471



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 173/379 (45%), Gaps = 23/379 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L +  R+S+ ++LLE M+ +G       Y      +CK  K +  A+   + + +    P
Sbjct: 123 LCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESK-VAAAWEVLREMLDAGCVP 181

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
            L T+N L+     ++    A  ++R +   G   +   Y TLI    K G+V       
Sbjct: 182 NLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAML 241

Query: 144 -DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
            D + +   PD +++N LI    ++  VD +  +L    A    + PD +T  +++    
Sbjct: 242 ADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRR--AVSGGIKPDVVTYSSVIYGLC 299

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            + ++D   E  +++     +G P    +Y+  I+   + G  + A  +Y+ MT  G   
Sbjct: 300 RSNRLD---EACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDA 356

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  S LID    AG+V+ A  +L      G     ++Y+SL+    +  +  +A+EL 
Sbjct: 357 DVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELV 416

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKT-MEVLSDMKSLGLCPNTITYSILLVACER 378
           E M+     P+  T N LI  +C  +++    ++   +M   G+ P+ ITYSILL   ++
Sbjct: 417 EEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEGLKK 476

Query: 379 KDDV-EVGLMLLSQAKEDG 396
             D+ E+  ++L Q  + G
Sbjct: 477 SKDLHELRHLVLDQMVQLG 495



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 150/347 (43%), Gaps = 47/347 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P + T+N L+     + + + A ++   ++          Y TL+    ++GK++   A+
Sbjct: 8   PNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMAL 67

Query: 147 FENV----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           F+ +      D + FN L+T   ++G ++ A +   +M+       P+ IT   L+    
Sbjct: 68  FQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCS---PNVITYSVLIDGLC 124

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            A +V +A E                                   + + M  +G  PD +
Sbjct: 125 KANRVSQAVE-----------------------------------LLESMKARGCSPDVI 149

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L+D      KV AA+E+L+E  + G    +++Y+SL+     A+    AL L   M
Sbjct: 150 TYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDM 209

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
                 P V T   LI  LC   ++     +L+DM   G  P+ + Y++L+    + D V
Sbjct: 210 TCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQV 269

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLS 427
           +  + LL +A   G+ P++V +  +I G+C S R ++A  L  +V S
Sbjct: 270 DESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKS 316



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 161/354 (45%), Gaps = 32/354 (9%)

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDW 242
           H  +P+ +T  +L+       + DRA+E+++  H  +++ +P +  Y   ++   +TG  
Sbjct: 4   HGCEPNVVTYNSLIDGLCKNNEPDRAQELFE--HMKSVECSPSMVTYNTLLDGLFRTGKL 61

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           E A +++ +M  +    D +  + L+     AGK+E A E  ++  ++  S  +I+YS L
Sbjct: 62  ERAMALFQEMLDRRS-HDVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSVL 119

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +     A    +A+EL E MK+    P V T   L+  LC   ++    EVL +M   G 
Sbjct: 120 IDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGC 179

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKAR 419
            PN +TY+ LL    R   V   L L+      G  PN+V +  +I G+C   R  +   
Sbjct: 180 VPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACA 239

Query: 420 TLNEHV--------LSFN---SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGC 468
            L + +        + +N   +G  + +    S+AL+  R A+  G  P V   S V+  
Sbjct: 240 MLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALL--RRAVSGGIKPDVVTYSSVIYG 297

Query: 469 LQLPYNADIRERL---VENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLE 516
           L      D   RL   V++ G   D +  S   +LIDG    G+ D  AF L E
Sbjct: 298 LCRSNRLDEACRLLLYVKSRGCPPDVILYS---TLIDGLCKAGKVD-EAFDLYE 347



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 39/207 (18%)

Query: 252 MTKKGVIPDEVFLSALID---------------------------------FAG--HAGK 276
           M   G  P+ V  ++LID                                   G    GK
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           +E A  + QE  ++  S  +IS++ L+     A   + ALE +  M   +  P V T + 
Sbjct: 61  LERAMALFQEMLDRR-SHDVISFNILVTGLCRAGKIETALEFFRKMDD-RCSPNVITYSV 118

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           LI  LC  +++ + +E+L  MK+ G  P+ ITY+IL+    ++  V     +L +  + G
Sbjct: 119 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 178

Query: 397 VIPNLVMFKCII-GMC-SRRYEKARTL 421
            +PNLV +  ++ G+C +RR   A  L
Sbjct: 179 CVPNLVTYNSLLHGLCRARRVSDALAL 205



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 92/197 (46%), Gaps = 26/197 (13%)

Query: 288 KNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
           ++ G    +++Y+SL+ G C N     +A EL+EHMKS++  P++ T N L+  L    +
Sbjct: 2   RDHGCEPNVVTYNSLIDGLCKN-NEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           L + M +  +M       + I+++IL+    R   +E  L    +  +D   PN++ +  
Sbjct: 61  LERAMALFQEMLD-RRSHDVISFNILVTGLCRAGKIETALEFFRKM-DDRCSPNVITYSV 118

Query: 407 II-GMC-----SRRYE-----KARTLNEHVLSFN------SGRPQIENKWTSLALMVYRE 449
           +I G+C     S+  E     KAR  +  V+++           ++   W      V RE
Sbjct: 119 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWE-----VLRE 173

Query: 450 AIVAGTIPTVEVVSKVL 466
            + AG +P +   + +L
Sbjct: 174 MLDAGCVPNLVTYNSLL 190


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 141/311 (45%), Gaps = 14/311 (4%)

Query: 115 LRLVQEAGLKA---DCKLYTTLITTCAKSGKVD---AMFENVK-----PDRVVFNALITA 163
           LRL+ E  ++    D + +TT++   ++ GK +    MFE ++     P  V +N ++  
Sbjct: 194 LRLLDEISVEEYSLDVRAWTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDV 253

Query: 164 CGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
            G+ G + ++   +L EM +  + ++ D  T   ++ AC   G +D AR+ +  +     
Sbjct: 254 YGKMGRSWNKILGLLDEMRS--NGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGY 311

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
                 Y   +    + G +  A S+  +M K    PD V  + L+     AG  E   +
Sbjct: 312 VAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGAD 371

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
            +     +GI    I+Y++++ A   A    KAL  +  MK     P V T NA++  L 
Sbjct: 372 FIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLG 431

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
              +L + +++L DM+S G  PN++T++ +L  C  K   +    +  + K  G  PN  
Sbjct: 432 KKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKYVNRVFREMKSCGFEPNRD 491

Query: 403 MFKCIIGMCSR 413
            F  +IG   R
Sbjct: 492 TFNALIGAYGR 502



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 168/395 (42%), Gaps = 55/395 (13%)

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121
           + HA +  + K ++AI    +  K   +PTL T+N+++ V      S    ++L L+ E 
Sbjct: 215 ILHA-YSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWN--KILGLLDEM 271

Query: 122 ---GLKADCKLYTTLITTCAKSGKVD---AMFENVKPDRVV-----FNALITACGQSGAV 170
              GL+ D    +T+I+ C + G +D     F  +K +  V     +N+L+   G++G  
Sbjct: 272 RSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIY 331

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
             A  +L EM     P  PD +T   L+ A   AG  +   +    + +  I      YT
Sbjct: 332 SEALSILKEMEKNNCP--PDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYT 389

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
             IN   + G  + A S +  M + G +P+    +A++   G   ++E   ++L + ++ 
Sbjct: 390 TVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSN 449

Query: 291 GISVGIISYSSLMGACSNAKNWQK------------------------------------ 314
           G +   +++++++  C N K   K                                    
Sbjct: 450 GCAPNSVTWNTMLAMCGN-KGMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQID 508

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
            +++YE M      P V+T NAL+ AL           V+ DMKS G  PN  +YS++L 
Sbjct: 509 VVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLML- 567

Query: 375 ACERKDDVEVGLMLLSQAKEDG-VIPNLVMFKCII 408
            C  K     G+  + +   +G + P+ ++ + ++
Sbjct: 568 NCYAKGGNGRGIEKIEEEIYNGHIFPSWILLRTLV 602



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 119/267 (44%), Gaps = 3/267 (1%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           N K D  +   ++   G+      A  +L E++ E + +D    T   ++ A +  G+ +
Sbjct: 169 NEKIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWT--TILHAYSRIGKYE 226

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSAL 267
           RA  +++ + K  +  T   Y + ++   + G  W     + D+M   G+  DE   S +
Sbjct: 227 RAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDEFTCSTV 286

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I   G  G ++ A +     K++G   G  +Y+SL+     A  + +AL + + M+    
Sbjct: 287 ISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNC 346

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P + T N L+ A        +  + +  M   G+ PN ITY+ ++ A  +    +  L 
Sbjct: 347 PPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALS 406

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSRR 414
              Q KE G +PN+  +  I+GM  ++
Sbjct: 407 FFRQMKESGCVPNVCTYNAILGMLGKK 433



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/443 (21%), Positives = 175/443 (39%), Gaps = 56/443 (12%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +YN L+    R G   E  D ++ M RKG++     Y        K+ K  K A  FF
Sbjct: 350 LVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDK-ALSFF 408

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + +      P + T+N ++ +       E    +L  ++  G   +   + T++  C   
Sbjct: 409 RQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNK 468

Query: 141 GK---VDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G    V+ +F  +K     P+R  FNALI A G+ G+      +  EM        P   
Sbjct: 469 GMHKYVNRVFREMKSCGFEPNRDTFNALIGAYGRCGSQIDVVKMYEEMIKA--GFTPCVT 526

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD----------- 241
           T  AL+ A A  G  + A  V   +     K     Y++ +NC ++ G+           
Sbjct: 527 TYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKIEEEI 586

Query: 242 --------WEFACSV----------------YDDMTKKGVIPDEVFLSALIDFAGHAGKV 277
                   W    ++                + +  K G  PD V  ++++         
Sbjct: 587 YNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMY 646

Query: 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
           + A E+L+  +  G+   +++Y+SLM   +      K  E+ + ++    KP + + N +
Sbjct: 647 DRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTV 706

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           I   C    + + +  LS+M   G+ P  +TY+  +     K        ++S   +   
Sbjct: 707 IKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDC 766

Query: 398 IPNLVMFKCII-GMC-SRRYEKA 418
            PN + +K ++ G C  ++Y++A
Sbjct: 767 RPNELTYKIVVDGYCKGKKYKEA 789



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/282 (20%), Positives = 120/282 (42%), Gaps = 16/282 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG------KV 143
           P ++T+N L++  A   D E A  V+  ++  G K +   Y+ ++   AK G      K+
Sbjct: 523 PCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEKI 582

Query: 144 DAMFEN--VKPDRVVFNALITACGQSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALM 198
           +    N  + P  ++   L+ A  +  A+   +RAF    +     H   PD +   +++
Sbjct: 583 EEEIYNGHIFPSWILLRTLVLANFKRRALMGMERAFQEFCK-----HGYKPDLVLFNSML 637

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              A     DRA E+ ++I +  ++     Y   ++  ++ G+      +   + K G  
Sbjct: 638 SIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGK 697

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD V  + +I      G ++ A   L E    GI   I++Y++ +   S    + +  E+
Sbjct: 698 PDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGMFSEVEEV 757

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
             +M     +P   T   ++   C G +  + M+ +S++  +
Sbjct: 758 ISYMIQHDCRPNELTYKIVVDGYCKGKKYKEAMDFVSNITEM 799



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 114/272 (41%), Gaps = 32/272 (11%)

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFEILQEA 287
           +T  ++  S+ G +E A ++++ M K G+ P  V  + ++D  G  G+       +L E 
Sbjct: 212 WTTILHAYSRIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEM 271

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           ++ G+     + S+++ AC       +A + +  +KS        T N+L+         
Sbjct: 272 RSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFGKAGIY 331

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            + + +L +M+     P+ +TY+ L+ A  R    E G   +      G++PN + +  +
Sbjct: 332 SEALSILKEMEKNNCPPDLVTYNELVAAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTV 391

Query: 408 IGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLG 467
           I                      G+   E+K    AL  +R+   +G +P V   + +LG
Sbjct: 392 INA-------------------YGKAGKEDK----ALSFFRQMKESGCVPNVCTYNAILG 428

Query: 468 CLQLPYNADIRERLVENLGVSADALKRSNLCS 499
            L        + RL E + +  D   RSN C+
Sbjct: 429 ML------GKKSRLEEMIDMLCDM--RSNGCA 452


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 172/415 (41%), Gaps = 53/415 (12%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           Y+     +CK  +  +    + ++V N   P + T+ +L+     S D +GA +V   + 
Sbjct: 267 YNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEII 326

Query: 120 EAGLKADCKLYTTLITTCAKSGKVD-----------AMFENVK----------------- 151
           + GL  D  +Y +L+    ++G+V            A   N++                 
Sbjct: 327 KTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDE 386

Query: 152 ---------------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                          PD V F  LI    Q+G  ++AF +  E  A V     D  +  +
Sbjct: 387 AIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEE--ARVSGKQLDVFSYSS 444

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++    N G++  A +VY+ + K   K    +Y   I+   Q      A  +Y  M   G
Sbjct: 445 MINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNG 504

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
             P  +  + LID    A K + A  + +E    G +  I +Y SL+    + K    AL
Sbjct: 505 CSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDAL 564

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVA 375
            +++ +    LK  V   N LI  LC   ++ + + V SDMK    C PN +TY+ L+  
Sbjct: 565 SIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDG 624

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMCS--RRYEKARTLNEHVLS 427
                 ++    L +   EDG+ P+++ +   I G+CS  R +E  + L+E VLS
Sbjct: 625 LYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDE-VLS 678



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/332 (20%), Positives = 147/332 (44%), Gaps = 12/332 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P L T+N+++    +  D + A  +   ++   +  D   Y+TL+   AK  ++D   + 
Sbjct: 156 PNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDL 215

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V+PD V +NAL+  C ++G  ++   V  ++  +     P+  T   ++   
Sbjct: 216 LDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPG-ARPNLATYNVMLDGL 274

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+     EV++ +   N++     Y I I+   ++GD + A  VY ++ K G++ D 
Sbjct: 275 CKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDA 334

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++L+     AG+V+ A++    A   G+   + +Y+ ++    ++    +A+EL++ 
Sbjct: 335 AMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELWDL 393

Query: 322 M-KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           + K +   P   T   LI  LC      K   +  + +  G   +  +YS ++       
Sbjct: 394 LEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVG 453

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            +   + +  +  +DG  PN  ++  +I G C
Sbjct: 454 RLVDAVKVYEKMDKDGCKPNSHIYNALISGFC 485



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 157/371 (42%), Gaps = 22/371 (5%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN L++     GR+ E     +     GL ++ + Y+     +  S   + EA   + L+
Sbjct: 337 YNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNL-RTYNIMIKGLFDS-GMVDEAIELWDLL 394

Query: 88  PN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                  P   TF  L+     +  +  AF +    + +G + D   Y+++I      G+
Sbjct: 395 EKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGR 454

Query: 143 -VDAM--FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
            VDA+  +E +     KP+  ++NALI+   Q      A  + ++M    +   P  IT 
Sbjct: 455 LVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMAD--NGCSPTVITY 512

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+     A +   A  V + + +         Y   I         + A S++  +  
Sbjct: 513 NTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILY 572

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKNWQ 313
           KG+  D +  + LI     AGKV+ A  +  + K  +     +++Y++LM          
Sbjct: 573 KGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYID 632

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA  L+  +    L+P + + N  I  LC  D++ + +++L ++ S G+ P  IT++IL+
Sbjct: 633 KAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILV 692

Query: 374 VACERKDDVEV 384
            A  +   ++V
Sbjct: 693 RAVIKYGPIQV 703



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 104/256 (40%), Gaps = 12/256 (4%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV       N L   GR+ + + + E M++ G      +Y+A     C+  +       +
Sbjct: 438 DVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIY 497

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            K+  N   PT+ T+N L+     ++  + A  V R + E G   D   Y +LI      
Sbjct: 498 SKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSD 557

Query: 141 GKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
            K+D         +++ +K D ++ N LI     +G VD A  V ++M  E     P+ +
Sbjct: 558 KKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMK-EKKNCPPNLV 616

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   LM      G +D+A  ++  I +  ++     Y   I              + D++
Sbjct: 617 TYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEV 676

Query: 253 TKKGVIPDEVFLSALI 268
             +G+IP  +  + L+
Sbjct: 677 LSRGIIPTVITWNILV 692



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/227 (18%), Positives = 95/227 (41%), Gaps = 37/227 (16%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + P+  T   ++++    G +DRA  ++  + +  +      Y+  +   ++    + A 
Sbjct: 154 IAPNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHAL 213

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            + D+M +  V PD                                   ++ Y++L+G C
Sbjct: 214 DLLDEMPRSRVQPD-----------------------------------VVCYNALLGGC 238

Query: 307 SNAKNWQKALELYEHM-KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
             A  ++K + +++ + K    +P ++T N ++  LC   +  +  EV   M +  L P+
Sbjct: 239 FKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPD 298

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            ITY IL+    R  DV+    + S+  + G++ +  M+  ++ G C
Sbjct: 299 VITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFC 345



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 73/151 (48%), Gaps = 6/151 (3%)

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMK----SIKLKPTVSTMNALITALCDGDQ 346
           G + GI S+++L+ A   A+ +  A   +  +       ++ P + T N ++ +LC    
Sbjct: 114 GCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGD 173

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           L + + +   ++   + P+ ITYS L+    ++D ++  L LL +     V P++V +  
Sbjct: 174 LDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNA 233

Query: 407 IIGMCSR--RYEKARTLNEHVLSFNSGRPQI 435
           ++G C +   +EK   + + ++     RP +
Sbjct: 234 LLGGCFKAGEFEKVMRVWDKLVKDPGARPNL 264


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 184/402 (45%), Gaps = 26/402 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRF 83
           +YN LI    R+G + E   LL     +G+      Y+A  + +CK     +A       
Sbjct: 294 TYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEM 353

Query: 84  FKLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            +L   P  +T+N +L+ +C      E A ++   +   G+  D   +++LI   A++G 
Sbjct: 354 LQLGLTPNAATYNTLLVEICRRDNILE-AQEIFDEMSRRGVLPDLVSFSSLIGVLARNGH 412

Query: 143 VDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +     + +        PD V++  LI    ++GA+  A  +  EM A    +D   +T 
Sbjct: 413 LYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDV--VTY 470

Query: 195 GALMKA-CANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDD 251
              +   C      D      +M+ +  +   P+ YT    I    + G+ + A ++++ 
Sbjct: 471 NTFLNGLCKKKMFADADMLFNEMVERGMV---PDFYTFTTLIRGYCKDGNMDKALNLFEA 527

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M +  + PD+V  + LID    AG++  A E+  +   + I    ISY +++    ++  
Sbjct: 528 MVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGL 587

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +AL L + M    ++P + T N LI   C    +PK  E LS M S G+ P++ +Y+ 
Sbjct: 588 LPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNT 647

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
           L+    ++ ++E   +L+++ ++ G+  N++ +  I+ G C+
Sbjct: 648 LIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCA 689



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 108/467 (23%), Positives = 205/467 (43%), Gaps = 49/467 (10%)

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           F    + +LS   M+  +    + SE    +LR+V+++G+ +  K+  +LI+TC   G V
Sbjct: 128 FPNFKHSSLSLSAMVHFLVRGRRLSEAQACILRMVRKSGV-SRVKVVESLISTCFYFGSV 186

Query: 144 DAMFENVKPDRVVFNALITACGQSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      ++++ L+    Q+  +     AF +L      V  ++  +  +G L++ 
Sbjct: 187 G----------LIYDLLVRTYVQAKKLREGSEAFQILRRKGVSV-SINACNKLLGGLVRT 235

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G VD A E+Y  + +  I+       I +N   +   +E       DM  KGV  D
Sbjct: 236 ----GWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFAD 291

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + LI+     G VE AF++L    ++G+  G+++Y++++        + +A ++  
Sbjct: 292 IVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLI 351

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M  + L P  +T N L+  +C  D + +  E+  +M   G+ P+ +++S L+    R  
Sbjct: 352 EMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNG 411

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS----------RRYEKARTLNEHVLSFN 429
            +   LM   + +  G++P+ V++  +I G C           R    AR     V+++N
Sbjct: 412 HLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYN 471

Query: 430 SGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVS 488
           +    + + K  + A M++ E +  G +P     + ++       N D    L E     
Sbjct: 472 TFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFE----- 526

Query: 489 ADALKRSNL-------CSLIDGF---GEYDPRAFSLLEEAASFGIVP 525
             A+ R+NL        +LIDGF   GE   RA  L ++     I+P
Sbjct: 527 --AMVRTNLKPDKVTYNTLIDGFCKAGEMG-RAKELWDDMIRKDIIP 570



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/386 (23%), Positives = 169/386 (43%), Gaps = 19/386 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R+  I E  ++ ++M R+G+L  D V  +    V      + +A   F+ 
Sbjct: 364 TYNTLLVEICRRDNILEAQEIFDEMSRRGVLP-DLVSFSSLIGVLARNGHLYQALMHFRE 422

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQ-VLRLVQEA---GLKADCKLYTTLIT-TCAKSG 141
           +    +   N++ ++        GA    L++  E    G   D   Y T +   C K  
Sbjct: 423 MERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKM 482

Query: 142 KVDA------MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
             DA      M E  + PD   F  LI    + G +D+A ++   M      + PD +T 
Sbjct: 483 FADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRT--NLKPDKVTY 540

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+     AG++ RA+E++  + + +I      Y   +N    +G    A ++ D M +
Sbjct: 541 NTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLE 600

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           KG+ P+ V  + LI     +G +  A+E L +  + GI     SY++L+       N +K
Sbjct: 601 KGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEK 660

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A  L   M+   L+  + T N ++   C   ++ +  +VL  M  +G+ P+  TYS L+ 
Sbjct: 661 AFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLIN 720

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPN 400
               +D+++       +  + G++P+
Sbjct: 721 GHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 107/252 (42%), Gaps = 21/252 (8%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-----QKAIKE 79
            +++  LIR     G + + ++L E M R  L      Y+      CK+      K + +
Sbjct: 502 FYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWD 561

Query: 80  AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                 ++P+  +S   +L   C+S    E A  +   + E G++ +     TLI    +
Sbjct: 562 DMIRKDIIPDH-ISYGTVLNGFCSSGLLPE-ALNLCDQMLEKGIRPNLVTCNTLIKGYCR 619

Query: 140 SGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           SG +   +E         + PD   +N LI    +   +++AF ++ EM  E   +  + 
Sbjct: 620 SGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEM--EKRGLQFNI 677

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           IT   ++      G++  A +V + + +  I      Y+  IN      + + A   +D+
Sbjct: 678 ITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDE 737

Query: 252 MTKKGVIPDEVF 263
           M ++G++PD+ F
Sbjct: 738 MLQRGLVPDDRF 749


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 160/355 (45%), Gaps = 15/355 (4%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           FF    S KA            +P + T++ +++     +  + A +VL  + + G+  +
Sbjct: 206 FFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPN 265

Query: 127 CKLYTTLITTCAKSGKVDAMF-------------ENVKPDRVVFNALITACGQSGAVDRA 173
           C+ YT+++     SG+                  + ++PD   +  L+      GA+   
Sbjct: 266 CRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGM 325

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
             +L  M    + + PDH     L+ A A  G+VD A  V+  + +  +      Y   I
Sbjct: 326 HALLDLMVR--NGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVI 383

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
               ++G  E A   ++ M  +G+ P  +  ++LI       K E A E++ E  ++GI 
Sbjct: 384 GILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGIC 443

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
           +  I ++S++ +        ++ +L++ M  I +KP + T + LI   C   ++ + M++
Sbjct: 444 LNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKL 503

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           LS M S+GL PNT+TY  L+    +   +   L+L  + +  GV P+++ +  I+
Sbjct: 504 LSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIIL 558



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 151/350 (43%), Gaps = 20/350 (5%)

Query: 41  ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---------PT 91
           + + +++L  M + G++   + Y +     C S +  KEA  F K V +         P 
Sbjct: 247 MDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQP-KEAIGFLKKVRSDGVEPDGLEPD 305

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-AMF--- 147
           ++T+  L+   A+     G   +L L+   G+  D  +Y  LI   AK GKVD AM    
Sbjct: 306 IATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFS 365

Query: 148 ----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
               + + PD V + A+I    +SG V+ A     +M  E   + P +I   +L+     
Sbjct: 366 KMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDE--GLSPGNIVYNSLIHGLCT 423

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             + +RA E+   +    I      +   I+   + G    +  ++D M + GV PD + 
Sbjct: 424 CNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIIT 483

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            S LID    AGK++ A ++L    + G+    ++Y +L+           AL L++ M+
Sbjct: 484 YSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEME 543

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           S  + P + T N ++  L    +     E+   +   G      TY+I+L
Sbjct: 544 SSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIIL 593



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 100/432 (23%), Positives = 182/432 (42%), Gaps = 43/432 (9%)

Query: 130 YTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y  LI  C ++ ++D  F        +  + + + F  L+           A D++    
Sbjct: 90  YAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCCSQ 238
            E+  + PD  +   L+K   +  +   A E+  M+      G+ P+V  YT  IN   +
Sbjct: 150 TELSCM-PDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFK 208

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            GD   A S Y +M  + + PD V  S++I        ++ A E+L      G+     +
Sbjct: 209 EGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRT 268

Query: 299 YSSLM-GACSNAKNWQKALELYEHMKSIK-----LKPTVSTMNALITALCDGDQLPKTME 352
           Y+S+M G CS+ +  ++A+   + ++S       L+P ++T   L+        L     
Sbjct: 269 YTSIMHGYCSSGQP-KEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHA 327

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC 411
           +L  M   G+ P+   Y+IL+ A  ++  V+  +++ S+ ++ G+ P+ V +  +IG +C
Sbjct: 328 LLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILC 387

Query: 412 -SRRYEKARTLNEHVLSFNSGRPQIE-----------NKW---TSLALMVYREAIVAGTI 456
            S R E A    E ++        I            NKW     L L +    I   TI
Sbjct: 388 KSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 447

Query: 457 PTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFS 513
               ++       ++  +  + + +V  +GV  D +  S   +LIDG+   G+ D  A  
Sbjct: 448 FFNSIIDSHCKEGRVIESEKLFDLMVR-IGVKPDIITYS---TLIDGYCLAGKMD-EAMK 502

Query: 514 LLEEAASFGIVP 525
           LL    S G+ P
Sbjct: 503 LLSGMVSVGLKP 514



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 141/341 (41%), Gaps = 21/341 (6%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCA 103
           LL+ M R G+     VY+       K  K  +    F K+     NP   T+  ++ +  
Sbjct: 328 LLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILC 387

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TTCAKSGKVDAMF-----ENVKPDRV 155
            S   E A      + + GL     +Y +LI    TC K  + + +        +  + +
Sbjct: 388 KSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 447

Query: 156 VFNALITACGQSGAV---DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
            FN++I +  + G V   ++ FD++  +      V PD IT   L+     AG++D A +
Sbjct: 448 FFNSIIDSHCKEGRVIESEKLFDLMVRIG-----VKPDIITYSTLIDGYCLAGKMDEAMK 502

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           +   +    +K     Y   IN   +      A  ++ +M   GV PD +  + ++    
Sbjct: 503 LLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLF 562

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTV 331
              +  AA E+       G  + + +Y+ ++ G C N K    AL +++++  + LK   
Sbjct: 563 QTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKN-KLTDDALRMFQNLCLMDLKLEA 621

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            T N +I AL    +  +  ++     S GL PN  TY ++
Sbjct: 622 RTFNIMIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLM 662



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 19/214 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK-EAFRFFKLVPNPTLS 93
           L + GR+ + +   E M  +GL   + VY++    +C   K  + E      L     L+
Sbjct: 386 LCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 445

Query: 94  T--FNMLM-SVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           T  FN ++ S C   +  +SE  F    L+   G+K D   Y+TLI     +GK+D   +
Sbjct: 446 TIFFNSIIDSHCKEGRVIESEKLFD---LMVRIGVKPDIITYSTLIDGYCLAGKMDEAMK 502

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    +KP+ V +  LI    +   +  A  +  EM  E   V PD IT   +++ 
Sbjct: 503 LLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEM--ESSGVSPDIITYNIILQG 560

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
                +   A+E+Y  I +   +     Y I ++
Sbjct: 561 LFQTRRTAAAKELYVRITESGTQIELSTYNIILH 594


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/508 (21%), Positives = 202/508 (39%), Gaps = 65/508 (12%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           + G++   +++L+ MER G       Y++  + + K +K  K      K+  +   P + 
Sbjct: 359 KSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVI 418

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-----E 148
           T+  L+       D + AF++  ++++ GLK D   Y  L     K+G+ +  +     +
Sbjct: 419 TYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRK 478

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            V   +V +  LI    ++G  D A  ++  M  E     PD  T   L+ A     +++
Sbjct: 479 GVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDE--GCTPDSYTYSVLLHALCKQKRLN 536

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A  +   +    IK T   YTI I+   + G  + A  +Y++MT  G  P     +  I
Sbjct: 537 EALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFI 596

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA------------------- 309
           +     G++E A +++ + + +G++  +++Y+ L+  C +                    
Sbjct: 597 NSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCE 656

Query: 310 -KNWQKAL-------------------------------ELYEHMKSIKLKPTVSTMNAL 337
              W   L                               +L E M    L PTV+T ++L
Sbjct: 657 PNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSL 716

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           I   C   +L +   +L  M   GL PN   Y++L+  C      E  L  +S   E G 
Sbjct: 717 IAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGF 776

Query: 398 IPNLVMFK-CIIGMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGT 455
            P L  ++  ++G+C+   +EK ++L   +L    G    E  W  L   + +   V   
Sbjct: 777 QPQLESYRLLVVGLCNEGDFEKVKSLFCDLLEL--GYNHDEVAWKILNDGLLKAGYVDIC 834

Query: 456 IPTVEVVSKVLGCLQLPYNADIRERLVE 483
              + ++ K   C+     A +  ++ E
Sbjct: 835 FQMLSIMEKRYCCISSQTYALVTNKMHE 862



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 116/532 (21%), Positives = 221/532 (41%), Gaps = 79/532 (14%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---------KAI 77
           +YN +I    + GR+++ + + E ME+ G    D  Y+   + +C  +          A+
Sbjct: 210 TYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAV 269

Query: 78  KEAFRFFKLVPNPTLSTF-NMLMSVCASSKDSEG-------------------------- 110
           KE F        PT+ TF N++   C + K  +                           
Sbjct: 270 KEGF-------TPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSL 322

Query: 111 --------AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK--------PDR 154
                   A ++L  +   GL  +   YT++I    KSGKVD   E +K        P+ 
Sbjct: 323 IKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNA 382

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
             +N+L+    +   + +A  +L +M  +   + P+ IT   L++   +    D A  ++
Sbjct: 383 WTYNSLMYGLVKDKKLHKAMALLTKMQKD--GIIPNVITYTTLLQGQCDEHDFDNAFRLF 440

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           +M+ +  +K     Y +  +   + G  E A   Y  + +KGV   +V+ + LID    A
Sbjct: 441 EMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALTKVYYTTLIDGFSKA 497

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G  + A  +++   ++G +    +YS L+ A    K   +AL + + M    +K T+   
Sbjct: 498 GNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAY 557

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
             LI  +    +      + ++M S G  P+  TY++ + +  ++  +E    L+ + + 
Sbjct: 558 TILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMER 617

Query: 395 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAG 454
           +GV P++V +  +I  C       R  +   L    G     N WT   L+   + ++ G
Sbjct: 618 EGVAPDVVTYNILIDGCGHMGYIDRAFS--TLKRMVGASCEPNYWTYCLLL---KHLLKG 672

Query: 455 TIPTVEVV--SKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
            +  V  V  S +   ++L     + ER+V++ G++      S   SLI GF
Sbjct: 673 NLAYVRSVDTSGMWNLIELDITWQLLERMVKH-GLNPTVTTYS---SLIAGF 720



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 136/319 (42%), Gaps = 11/319 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--- 146
           P   T+N ++       D   A +  RL+ E GL+ +      L+    ++G++      
Sbjct: 66  PDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWL 125

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                    + +   +  LI     +  V +A  +   M  +     P+      L+   
Sbjct: 126 FLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRD--GCSPNVRAFTFLISGL 183

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             +G+V  AR ++  + +  +  +   Y   I   S+ G    A  + + M K G  PD+
Sbjct: 184 CKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDD 243

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LI +     K E A E+L  A  +G +  ++++++L+     A+ +  AL +   
Sbjct: 244 WTYNTLI-YGLCDQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNK 302

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M S K K  +     LI +L   D+L +  E+L+++ + GL PN ITY+ ++    +   
Sbjct: 303 MMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGK 362

Query: 382 VEVGLMLLSQAKEDGVIPN 400
           V++ L +L   + DG  PN
Sbjct: 363 VDIALEVLKMMERDGCQPN 381



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 130/320 (40%), Gaps = 42/320 (13%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAM 146
           ++ +L+     +K    A  +  +++  G   + + +T LI+   KSG+V       DAM
Sbjct: 140 SYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 199

Query: 147 FEN-VKPDRVVFNALITACGQSGAVDRAFDV--LAEMNAEVHPVD--------------- 188
            +N V P  + +NA+I    + G ++ A  +  L E N   HP D               
Sbjct: 200 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNG-CHPDDWTYNTLIYGLCDQKT 258

Query: 189 ----------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
                           P  +T   L+     A + D A  +   +     K   +V+   
Sbjct: 259 EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKL 318

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           IN   +    + A  + ++++  G++P+ +  +++ID    +GKV+ A E+L+  +  G 
Sbjct: 319 INSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGC 378

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
                +Y+SLM      K   KA+ L   M+   + P V T   L+   CD         
Sbjct: 379 QPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFR 438

Query: 353 VLSDMKSLGLCPNTITYSIL 372
           +   M+  GL P+   Y++L
Sbjct: 439 LFEMMEQNGLKPDEHAYAVL 458



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 128/321 (39%), Gaps = 23/321 (7%)

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
           +P+ Y  A+   ++    E+   VY  + + G++PD V  + +I      G +  A    
Sbjct: 32  SPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYF 91

Query: 285 QEAKNQGISVGIISYSSL-MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           +     G+     + ++L +G C   +  +KA  L+  M  +  +    +   LI  LCD
Sbjct: 92  RLLLEGGLEPETFTCNALVLGYCRTGE-LRKACWLFLMMPLMGCQRNEYSYTILIQGLCD 150

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
              + K + +   MK  G  PN   ++ L+    +   V    +L     ++GV+P+++ 
Sbjct: 151 AKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMT 210

Query: 404 FKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALM-------------VYR 448
           +  +I   S+  R   A  + E ++  N   P   + WT   L+             +  
Sbjct: 211 YNAMIVGYSKLGRMNDALKIKE-LMEKNGCHP---DDWTYNTLIYGLCDQKTEEAEELLN 266

Query: 449 EAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD 508
            A+  G  PTV   + ++    +    D   R+   +  S   L       LI+   + D
Sbjct: 267 NAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKD 326

Query: 509 --PRAFSLLEEAASFGIVPCV 527
               A  LL E ++ G+VP V
Sbjct: 327 RLKEAKELLNEISANGLVPNV 347


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 185/413 (44%), Gaps = 21/413 (5%)

Query: 12  PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           P+P+    N       +L  Y+ +I  G+  E + +     R  L   + V +   F  C
Sbjct: 81  PFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGI-----RNDLYTFNIVINC--FCCC 133

Query: 72  -KSQKAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
            +   A+    +  KL   P   T   L++  C  ++ S+    V ++V E G K D   
Sbjct: 134 FQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV-EIGYKPDIVA 192

Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y  +I +  K+ +V+  F+         ++P+ V + AL+     S     A  +L++M 
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
            +   + P+ IT  AL+ A    G+V  A+E+++ + + +I      Y+  +N       
Sbjct: 253 KK--KITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDR 310

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            + A  ++D M  KG + D V  + LI+    A +VE   ++ +E   +G+    ++Y++
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+     A +  KA E +  M    + P + T N L+  LCD  +L K + +  DM+   
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           +  + +TY+ ++    +   VE    L       G+ P++V +  ++ G+C++
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTK 483



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 151/348 (43%), Gaps = 12/348 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P++  FN L+S     K  +    + + ++  G++ D   +  +I       +V    
Sbjct: 81  PFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLAL 140

Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                      +PDRV   +L+    +   V  A  ++ +M  E+    PD +   A++ 
Sbjct: 141 SILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM-VEIG-YKPDIVAYNAIID 198

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           +     +V+ A + +K I +  I+     YT  +N    +  W  A  +  DM KK + P
Sbjct: 199 SLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP 258

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           + +  SAL+D     GKV  A E+ +E     I   I++YSSL+          +A +++
Sbjct: 259 NVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMF 318

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M S      V + N LI   C   ++   M++  +M   GL  NT+TY+ L+    + 
Sbjct: 319 DLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQA 378

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
            DV+      SQ    G+ P++  +  ++ G+C     EKA  + E +
Sbjct: 379 GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 426



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 171/373 (45%), Gaps = 36/373 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   R+ R+S+ + L++ M   G       Y+A   ++CK+++ + +AF FFK +     
Sbjct: 163 NGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKR-VNDAFDFFKEIERKGI 221

Query: 90  -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P + T+  L++ +C SS+ S+ A    RL+                         D + 
Sbjct: 222 RPNVVTYTALVNGLCNSSRWSDAA----RLLS------------------------DMIK 253

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + + P+ + ++AL+ A  ++G V  A ++  EM      +DPD +T  +L+       ++
Sbjct: 254 KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVR--MSIDPDIVTYSSLVNGLCLHDRI 311

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A +++ ++           Y   IN   +    E    ++ +M+++G++ + V  + L
Sbjct: 312 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I     AG V+ A E   +    GIS  I +Y+ L+G   +    +KAL ++E M+  ++
Sbjct: 372 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 431

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
              + T   +I  +C   ++ +   +   +   GL P+ +TY+ ++     K  +     
Sbjct: 432 DLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEA 491

Query: 388 LLSQAKEDGVIPN 400
           L ++ K++G++ N
Sbjct: 492 LYTKMKQEGLMKN 504


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 135/292 (46%), Gaps = 10/292 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM-- 146
           PT+ TFN LMS    + D   A  +  L+ +AG+  D   Y   I    K+G++ DAM  
Sbjct: 147 PTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEM 206

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE      + P+ VV   LI A  + G V    ++  EM      V  D +   AL+   
Sbjct: 207 FEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEM--ATRGVKADLVAYNALVNGF 264

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                +  A ++ + + K  +K     YT  I+ C + G+ + A  +  +M+ +GV  D+
Sbjct: 265 CRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDD 324

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  +ALI     AG+   A  IL E    G+     +Y+ ++ A     + +   +  + 
Sbjct: 325 VTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKE 384

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           M++    P + T N ++   C   Q+     +L+ M ++G+CPN ITY+ILL
Sbjct: 385 MQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILL 436



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 129/301 (42%), Gaps = 42/301 (13%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V P+   FN L+    +SG +  A +V  EM      V P  +T   LM     A  ++ 
Sbjct: 110 VPPEARQFNMLMRDMIRSGKLASARNVFDEMLR--RGVQPTVVTFNTLMSGMCKASDLNN 167

Query: 210 AREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           A  +  ++ K  I   P+VYT    I    +TG  + A  ++++M ++G+ P+ V L+ L
Sbjct: 168 ANALRGLMAKAGI--APDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTL 225

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ID     G V A  E+  E   +G+   +++Y++L+      ++ + A ++ E M+   L
Sbjct: 226 IDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGL 285

Query: 328 KPTVSTMNALITALCDGDQLPKTME----------------------------------- 352
           KP   T   LI   C   +L   ME                                   
Sbjct: 286 KPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAER 345

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           +L +M   GL P+  TY++++ A  +  DV+ G   L + +  G  P +V +  ++ G C
Sbjct: 346 ILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFC 405

Query: 412 S 412
           S
Sbjct: 406 S 406



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/227 (20%), Positives = 105/227 (46%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           V P+      LM+    +G++  AR V+  + +  ++ T   +   ++   +  D   A 
Sbjct: 110 VPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNAN 169

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           ++   M K G+ PD     A I      G+++ A E+ +E   +G++   +  ++L+ A 
Sbjct: 170 ALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAH 229

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
               +    LEL   M +  +K  +   NAL+   C    +    +++ +M+  GL P+ 
Sbjct: 230 CKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDK 289

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +TY+ L+  C ++ +++  + +  +  ++GV  + V +  +I   S+
Sbjct: 290 VTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSK 336



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 1/175 (0%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A + Y  +   GV P+    + L+     +GK+ +A  +  E   +G+   ++++++LM 
Sbjct: 98  AYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMS 157

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
               A +   A  L   M    + P V T  A I  LC   ++   ME+  +M   GL P
Sbjct: 158 GMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNP 217

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKA 418
           NT+  + L+ A  ++ DV  GL L  +    GV  +LV +  ++ G C  R  KA
Sbjct: 218 NTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKA 272



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 82/179 (45%)

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           ++G    A +V+D+M ++GV P  V  + L+     A  +  A  +       GI+  + 
Sbjct: 126 RSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVY 185

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +Y + +         Q A+E++E M    L P    +  LI A C    +   +E+  +M
Sbjct: 186 TYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEM 245

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
            + G+  + + Y+ L+    R  D++    ++ + ++DG+ P+ V +  +I  C +  E
Sbjct: 246 ATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGE 304



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/164 (19%), Positives = 64/164 (39%), Gaps = 3/164 (1%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
            CS+     ++G+    V + A  D       V  A+       + G+      ++ LM 
Sbjct: 66  GCSLLLLALRRGI---RVPMPAWSDLMNRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMR 122

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
               +     A  +++ M    ++PTV T N L++ +C    L     +   M   G+ P
Sbjct: 123 DMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAP 182

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +  TY   +    +   ++  + +  +  E G+ PN V+   +I
Sbjct: 183 DVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLI 226


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 116/533 (21%), Positives = 219/533 (41%), Gaps = 68/533 (12%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-----KSQKAIKEAFRFFKLVPNPT 91
           R GR+++ ++ +E+ME  GL      YHA     C     +  + I E+ +   L PN  
Sbjct: 230 RDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPN-- 287

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFE-- 148
           + T+ +L+         E A +V++ ++E G +  D   Y  +I    + G++D      
Sbjct: 288 VVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVR 347

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  +  +  V+N +I    + G ++    VL EM  E   + PD  +   L+    
Sbjct: 348 NEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM--EDVGMRPDKYSYNTLIDGYC 405

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G + +A E+ +M+ +  +  T   Y   +         + A  ++  M K+GV P+E+
Sbjct: 406 REGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEI 465

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             S L+D    AGK E A  + +E   +G++  +I++++++          +A EL + M
Sbjct: 466 SCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRM 525

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT------ITYSILLVAC 376
           K ++  P   T   L    C   QL     +++ M+ LG  P+       IT   +    
Sbjct: 526 KELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQW 585

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQI 435
            + +D+       S+    G+ PNLV +  +I G C     K   L+E            
Sbjct: 586 HKVNDIH------SEMSARGLSPNLVTYGALIAGWC-----KEGNLHE------------ 622

Query: 436 ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL-------GVS 488
                  A  +Y E +  G  P V + S ++ C       D    +++ L       G S
Sbjct: 623 -------ACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCS 675

Query: 489 ADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKL 541
              ++   +  ++D   + +P + +++     FG+  C S +    + DA+ L
Sbjct: 676 ISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGL--CKSGR----IADAKSL 722



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 113/237 (47%), Gaps = 6/237 (2%)

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           ++   L++A A+AGQ+  A  V+  + K   + +       +N   Q+GD   A  VY  
Sbjct: 149 VSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQ 208

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M   GV+PDE  ++ +       G+V  A E ++E +  G+ V +++Y ++M  C     
Sbjct: 209 MRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMD-CYCGMG 267

Query: 312 W-QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCPNTITY 369
           W + A  + E ++   L P V T   L+   C   ++ +   V+ +MK  G +  + + Y
Sbjct: 268 WTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAY 327

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNE 423
            +++    ++  ++    + ++ ++ G+  NL ++  +I G+C   R  E  + L E
Sbjct: 328 GMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQE 384



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 186/475 (39%), Gaps = 102/475 (21%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +SYN LI    R+G + +  ++   M R GL      Y+      C S  AI +A R + 
Sbjct: 395 YSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFC-SLHAIDDALRLWF 453

Query: 86  LV------PNP-------------------------TLS--------TFNMLMS-VCASS 105
           L+      PN                          TL+        TFN +++ +C   
Sbjct: 454 LMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIG 513

Query: 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVF 157
           + +E A ++L  ++E     D   Y TL     K G++                P   +F
Sbjct: 514 RMAE-AEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMF 572

Query: 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 217
           N+ IT    +    +  D+ +EM+A    + P+ +T GAL+      G +  A  +Y   
Sbjct: 573 NSFITGHFIAKQWHKVNDIHSEMSAR--GLSPNLVTYGALIAGWCKEGNLHEACNLY--F 628

Query: 218 HKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH-- 273
              N    P V+  +  ++C  + G  + A  V   +    +IP     +  ID   H  
Sbjct: 629 EMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVV 688

Query: 274 ------------------------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
                                   +G++  A  + +  +N+       +YSSL+  C+ +
Sbjct: 689 DTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAAS 748

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
            +  +A  L + M S  L P + T N+LI  LC   +L + + + + ++S G+ PN ITY
Sbjct: 749 GSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITY 808

Query: 370 SILLVA-CE----------RKDDVEVGLM-----LLSQAKEDGVIPNLVMFKCII 408
           + L+   C+          ++  VE G M     LL Q  E+ V PN + +  +I
Sbjct: 809 NTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLI 863



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/418 (19%), Positives = 166/418 (39%), Gaps = 42/418 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L + GR+ E   +L++ME  G+      Y+      C+ + ++++AF   +++    L
Sbjct: 367 NGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCR-EGSMRKAFEMCRMMVRNGL 425

Query: 93  S----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
           +    T+N L+    S    + A ++  L+ + G+  +    +TL+    K+GK +    
Sbjct: 426 AATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALN 485

Query: 145 ----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                +   +  + + FN +I    + G +  A ++L  M     P  PD +T   L   
Sbjct: 486 LWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCP--PDSLTYRTLFDG 543

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               GQ+  A  +   +       + E++   I        W     ++ +M+ +G+ P+
Sbjct: 544 YCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPN 603

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V   ALI      G +  A  +  E  N G++  +   S+LM          +A  + +
Sbjct: 604 LVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQ 663

Query: 321 HMKSIKLKP--TVSTM------------------------NALITALCDGDQLPKTMEVL 354
            + +I + P  ++ST+                        N +I  LC   ++     + 
Sbjct: 664 KLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLF 723

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             +++    P+  TYS L+  C     ++    L       G+ PN++ +  +I G+C
Sbjct: 724 ESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLC 781



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 138/333 (41%), Gaps = 15/333 (4%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           + E +R F      +  +F++L+   A +     A  V   + + G +   +    L+  
Sbjct: 137 LAEVYRDFTF----SAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNK 192

Query: 137 CAKSGK--VDAM------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             +SG   + AM         V PD      +  A  + G V +A + + EM  E   ++
Sbjct: 193 LVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEM--EGMGLE 250

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
            + +   A+M      G  + AR + + + +  +      YT+ +    + G  E A  V
Sbjct: 251 VNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERV 310

Query: 249 YDDMTKKG-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
             +M + G ++ DEV    +I+     G+++ A  +  E ++ GI V +  Y++++    
Sbjct: 311 VKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLC 370

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                ++  ++ + M+ + ++P   + N LI   C    + K  E+   M   GL   T+
Sbjct: 371 KLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTL 430

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           TY+ LL        ++  L L     + GV PN
Sbjct: 431 TYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPN 463



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 140/332 (42%), Gaps = 12/332 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P+L + N L++    S D   A  V   ++ AG+  D      +     + G+V    E 
Sbjct: 181 PSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEF 240

Query: 150 VKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           V+         + V ++A++      G  + A  +L  +  +   + P+ +T   L+K  
Sbjct: 241 VEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRK--GLSPNVVTYTLLVKGY 298

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              G+++ A  V K + +       EV Y + IN   Q G  + A  V ++M   G+  +
Sbjct: 299 CKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVN 358

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + +I+     G++E   ++LQE ++ G+     SY++L+       + +KA E+  
Sbjct: 359 LFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCR 418

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    L  T  T N L+   C    +   + +   M   G+ PN I+ S LL    +  
Sbjct: 419 MMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAG 478

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             E  L L  +    G+  N++ F  +I G+C
Sbjct: 479 KTEQALNLWKETLARGLAKNVITFNTVINGLC 510



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 159/395 (40%), Gaps = 40/395 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPN 89
           N L + GR++E  +LL+ M+          Y   F   CK  +   A     +   L   
Sbjct: 507 NGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFA 566

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DA 145
           P++  FN  ++    +K       +   +   GL  +   Y  LI    K G +    + 
Sbjct: 567 PSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNL 626

Query: 146 MFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            FE V     P+  + +AL++   + G VD A  VL ++           + I  +    
Sbjct: 627 YFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKL-----------VNIDMIPGCS 675

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            +  ++D+   V   I   N      ++ + I    ++G    A S+++ +  K  +PD 
Sbjct: 676 ISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDN 735

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
              S+LI     +G ++ AF +     + G++  II+Y+SL+ G C + K   +A+ L+ 
Sbjct: 736 FTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGK-LSRAVNLFN 794

Query: 321 HMKSIKLKPTVSTMNALITALC----------------DGDQLPKTMEVLSDMKSLGLCP 364
            ++S  + P   T N LI   C                +   + + +++L  M    + P
Sbjct: 795 KLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDP 854

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
           N ITY  L+    +  ++E    L  +    G++P
Sbjct: 855 NYITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLP 889



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 129/329 (39%), Gaps = 36/329 (10%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
            H +++Q H  N            D+  +M  +GL      Y A     CK     +   
Sbjct: 578 GHFIAKQWHKVN------------DIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACN 625

Query: 82  RFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
            +F++V N   P +   + LMS        + A  VL+ +    +   C + T  I    
Sbjct: 626 LYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKI- 684

Query: 139 KSGKVDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
            S  VD + + N     V++N +I    +SG +  A  +   +  +     PD+ T  +L
Sbjct: 685 -SHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNK--RFLPDNFTYSSL 741

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +  CA +G +D A  +  ++    +      Y   I    ++G    A ++++ +  KG+
Sbjct: 742 IHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGI 801

Query: 258 IPDEVFLSALIDFAGHAGK----------------VEAAFEILQEAKNQGISVGIISYSS 301
            P+ +  + LID     GK                +E A ++L +     +    I+Y +
Sbjct: 802 SPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCT 861

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPT 330
           L+     + N ++  +LY+ M    L PT
Sbjct: 862 LIHGYIKSGNMEEISKLYDEMHIRGLLPT 890


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 155/348 (44%), Gaps = 34/348 (9%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           V +PT  T+ +LM  C  +   E A      +   GL+ D                    
Sbjct: 110 VLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDI------------------- 150

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
                   ++ N L+    ++   D A D+L     E+  V PD  +   L+K+  + G+
Sbjct: 151 --------IIANHLLKGFCEAKRTDEALDILLHRTPELGCV-PDVFSYSILLKSLCDQGK 201

Query: 207 VDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
             +A ++ +M+ +     +P+V  YT  I+C  + GD   AC ++ +M ++G+ PD V  
Sbjct: 202 SGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTY 261

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           S+++     A  +  A   L++  N+G+     +Y++L+   S+   W++A+ +++ M+ 
Sbjct: 262 SSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRR 321

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             + P V T+N L+ +LC   ++ +  +V   M   G  P+  +Y I+L     K  +  
Sbjct: 322 HSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVD 381

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
              L      DG+ P++  F  +I    + Y     L++ ++ FN  R
Sbjct: 382 MTDLFDLMLGDGIAPDIYTFSVLI----KAYANCGMLDKAMIIFNEMR 425



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 171/387 (44%), Gaps = 17/387 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
             ++G +++  DL ++M ++G+      Y +    +CK+ +A+ +A  F + + N    P
Sbjct: 233 FFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKA-RAMGKAEAFLRQMVNKGVLP 291

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
              T+N L+   +S+   + A +V + ++   +  D      L+ +  K GK+       
Sbjct: 292 DNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVF 351

Query: 144 DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M  +   PD   +  ++      G +    D+   M  +   + PD  T   L+KA A
Sbjct: 352 DTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGD--GIAPDIYTFSVLIKAYA 409

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           N G +D+A  ++  +  + +K     YT  I    + G  + A   ++ M  +GV PD+ 
Sbjct: 410 NCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKY 469

Query: 263 FLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
               LI  F  H G +  A E++ E  N G+ + I+ +SS++           A  +++ 
Sbjct: 470 AYHCLIQGFCTH-GSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDL 528

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
             ++   P     + L+   C   ++ K + V   M S G+ PN + Y  L+    +   
Sbjct: 529 TVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGR 588

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ++ GL L  +  + G+ P+ +++  II
Sbjct: 589 IDEGLSLFREMLQKGIKPSTILYNIII 615



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 174/410 (42%), Gaps = 23/410 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI      G+  E + + ++M R  +L      +    ++CK  K IKEA   F  
Sbjct: 295 TYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGK-IKEARDVFDT 353

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     NP + ++ ++++  A+         +  L+   G+  D   ++ LI   A  G 
Sbjct: 354 MAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGM 413

Query: 143 VD-AMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +D AM          VKPD V +  +I A  + G +D A +   +M  +   V PD    
Sbjct: 414 LDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQ--GVAPDKYAY 471

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L++     G + +A+E+   I    ++     ++  IN   + G    A +++D    
Sbjct: 472 HCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVN 531

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G  PD V  S L+D     GK+E A  +     + GI   ++ Y +L+          +
Sbjct: 532 VGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDE 591

Query: 315 ALELYEHMKSIKLKPTVSTMNALITAL-CDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            L L+  M    +KP+    N +I  L   G  +P  ++   +M   G+  N  TY+I+L
Sbjct: 592 GLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVK-FHEMTESGIAINKCTYNIVL 650

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
               +    +  + L  + +   V  +++    +I GM  +RR E+A+ L
Sbjct: 651 RGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDL 700



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/379 (19%), Positives = 159/379 (41%), Gaps = 46/379 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+I E  D+ + M  KG  + D   +    N   ++  + +    F L+      P
Sbjct: 338 LCKYGKIKEARDVFDTMAMKGQ-NPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAP 396

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            + TF++L+   A+    + A  +   +++ G+K D   YTT+I    + GK+D   E  
Sbjct: 397 DIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKF 456

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-------------- 188
                  V PD+  ++ LI      G++ +A +++ E+      +D              
Sbjct: 457 NQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKL 516

Query: 189 -------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
                              PD +    LM      G++++A  V+  +    I+    VY
Sbjct: 517 GRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVY 576

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
              +N   + G  +   S++ +M +KG+ P  +  + +ID    AG+   A     E   
Sbjct: 577 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTE 636

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            GI++   +Y+ ++      + + +A+ L++ ++++ +K  + T+N +I  +    ++ +
Sbjct: 637 SGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEE 696

Query: 350 TMEVLSDMKSLGLCPNTIT 368
             ++ + +   GL P  +T
Sbjct: 697 AKDLFASISRSGLVPCVVT 715


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 116/533 (21%), Positives = 219/533 (41%), Gaps = 68/533 (12%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-----KSQKAIKEAFRFFKLVPNPT 91
           R GR+++ ++ +E+ME  GL      YHA     C     +  + I E+ +   L PN  
Sbjct: 230 RDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPN-- 287

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMFE-- 148
           + T+ +L+         E A +V++ ++E G +  D   Y  +I    + G++D      
Sbjct: 288 VVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVR 347

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  +  +  V+N +I    + G ++    VL EM  E   + PD  +   L+    
Sbjct: 348 NEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEM--EDVGMRPDKYSYNTLIDGYC 405

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G + +A E+ +M+ +  +  T   Y   +         + A  ++  M K+GV P+E+
Sbjct: 406 REGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEI 465

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             S L+D    AGK E A  + +E   +G++  +I++++++          +A EL + M
Sbjct: 466 SCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRM 525

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT------ITYSILLVAC 376
           K ++  P   T   L    C   QL     +++ M+ LG  P+       IT   +    
Sbjct: 526 KELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQW 585

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQI 435
            + +D+       S+    G+ PNLV +  +I G C     K   L+E            
Sbjct: 586 HKVNDIH------SEMSARGLSPNLVTYGALIAGWC-----KEGNLHE------------ 622

Query: 436 ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL-------GVS 488
                  A  +Y E +  G  P V + S ++ C       D    +++ L       G S
Sbjct: 623 -------ACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCS 675

Query: 489 ADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKL 541
              ++   +  ++D   + +P + +++     FG+  C S +    + DA+ L
Sbjct: 676 ISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGL--CKSGR----IADAKSL 722



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 164/388 (42%), Gaps = 24/388 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPN 89
           N L + GR++E  +LL+ M+          Y   F   CK  +   A     +   L   
Sbjct: 507 NGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFA 566

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DA 145
           P++  FN  ++    +K       +   +   GL  +   Y  LI    K G +    + 
Sbjct: 567 PSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNL 626

Query: 146 MFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            FE V     P+  + +AL++   + G VD A  VL ++           + I  +    
Sbjct: 627 YFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKL-----------VNIDMIPGCS 675

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            +  ++D+   V   I   N      ++ + I    ++G    A S+++ +  K  +PD 
Sbjct: 676 ISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDN 735

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
              S+LI     +G ++ AF +     + G++  II+Y+SL+ G C + K   +A+ L+ 
Sbjct: 736 FTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGK-LSRAVNLFN 794

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            ++S  + P   T N LI   C   +  +  ++   M   G+ P  ITYSIL+     + 
Sbjct: 795 KLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQG 854

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            +E  + LL Q  E+ V PN + +  +I
Sbjct: 855 YMEEAIKLLDQMIENNVDPNYITYCTLI 882



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 113/237 (47%), Gaps = 6/237 (2%)

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           ++   L++A A+AGQ+  A  V+  + K   + +       +N   Q+GD   A  VY  
Sbjct: 149 VSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQ 208

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M   GV+PDE  ++ +       G+V  A E ++E +  G+ V +++Y ++M  C     
Sbjct: 209 MRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMD-CYCGMG 267

Query: 312 W-QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCPNTITY 369
           W + A  + E ++   L P V T   L+   C   ++ +   V+ +MK  G +  + + Y
Sbjct: 268 WTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAY 327

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKARTLNE 423
            +++    ++  ++    + ++ ++ G+  NL ++  +I G+C   R  E  + L E
Sbjct: 328 GMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQE 384



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 81/418 (19%), Positives = 166/418 (39%), Gaps = 42/418 (10%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L + GR+ E   +L++ME  G+      Y+      C+ + ++++AF   +++    L
Sbjct: 367 NGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCR-EGSMRKAFEMCRMMVRNGL 425

Query: 93  S----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
           +    T+N L+    S    + A ++  L+ + G+  +    +TL+    K+GK +    
Sbjct: 426 AATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALN 485

Query: 145 ----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                +   +  + + FN +I    + G +  A ++L  M     P  PD +T   L   
Sbjct: 486 LWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCP--PDSLTYRTLFDG 543

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               GQ+  A  +   +       + E++   I        W     ++ +M+ +G+ P+
Sbjct: 544 YCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPN 603

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V   ALI      G +  A  +  E  N G++  +   S+LM          +A  + +
Sbjct: 604 LVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQ 663

Query: 321 HMKSIKLKP--TVSTM------------------------NALITALCDGDQLPKTMEVL 354
            + +I + P  ++ST+                        N +I  LC   ++     + 
Sbjct: 664 KLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLF 723

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             +++    P+  TYS L+  C     ++    L       G+ PN++ +  +I G+C
Sbjct: 724 ESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLC 781



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 138/333 (41%), Gaps = 15/333 (4%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           + E +R F      +  +F++L+   A +     A  V   + + G +   +    L+  
Sbjct: 137 LAEVYRDFTF----SAVSFDLLLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNK 192

Query: 137 CAKSGK--VDAM------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             +SG   + AM         V PD      +  A  + G V +A + + EM  E   ++
Sbjct: 193 LVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEM--EGMGLE 250

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
            + +   A+M      G  + AR + + + +  +      YT+ +    + G  E A  V
Sbjct: 251 VNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERV 310

Query: 249 YDDMTKKG-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
             +M + G ++ DEV    +I+     G+++ A  +  E ++ GI V +  Y++++    
Sbjct: 311 VKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLC 370

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
                ++  ++ + M+ + ++P   + N LI   C    + K  E+   M   GL   T+
Sbjct: 371 KLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTL 430

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           TY+ LL        ++  L L     + GV PN
Sbjct: 431 TYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPN 463



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 140/332 (42%), Gaps = 12/332 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P+L + N L++    S D   A  V   ++ AG+  D      +     + G+V    E 
Sbjct: 181 PSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEF 240

Query: 150 VKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           V+         + V ++A++      G  + A  +L  +  +   + P+ +T   L+K  
Sbjct: 241 VEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRK--GLSPNVVTYTLLVKGY 298

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV-YTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              G+++ A  V K + +       EV Y + IN   Q G  + A  V ++M   G+  +
Sbjct: 299 CKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVN 358

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + +I+     G++E   ++LQE ++ G+     SY++L+       + +KA E+  
Sbjct: 359 LFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCR 418

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    L  T  T N L+   C    +   + +   M   G+ PN I+ S LL    +  
Sbjct: 419 MMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAG 478

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             E  L L  +    G+  N++ F  +I G+C
Sbjct: 479 KTEQALNLWKETLARGLAKNVITFNTVINGLC 510



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 135/321 (42%), Gaps = 20/321 (6%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +S  L +Y  LI    ++G + E  +L  +M   G+     +  A      K  K  
Sbjct: 597 ARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVD 656

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           +      KLV        +M+     S+ + +    V+  + +    +   ++  +I   
Sbjct: 657 EANLVLQKLV------NIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVIIFGL 710

Query: 138 AKSGKV---DAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            KSG++    ++FE+++     PD   +++LI  C  SG++D AF +   M +    + P
Sbjct: 711 CKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSA--GLTP 768

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           + IT  +L+     +G++ RA  ++  +    I      Y   I+   + G    A  + 
Sbjct: 769 NIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLK 828

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
             M ++G+ P  +  S LI      G +E A ++L +     +    I+Y +L+     +
Sbjct: 829 QKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKS 888

Query: 310 KNWQKALELYEHMKSIKLKPT 330
            N ++  +LY+ M    L PT
Sbjct: 889 GNMEEISKLYDEMHIRGLLPT 909


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 148/317 (46%), Gaps = 20/317 (6%)

Query: 119 QEAGLKADCKLYTTLITTCAKSG------KV--DAMFENVKPDRVVFNALITACGQSGAV 170
           ++ G K D   Y  L+    KSG      KV  D +     P+ V F  LI    ++G  
Sbjct: 19  EQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQA 78

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
            RA + L  ++     V PD      L+      G  D+A ++++ +    +      Y 
Sbjct: 79  TRALEFLRALDE--FSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYN 136

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAG--HAGKVEAAFEILQE 286
             I+   ++G+ E A  + ++M ++G    PD V  + LI+ AG    G VE A EIL  
Sbjct: 137 TVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLIN-AGICKDGDVEEALEILDG 195

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            K  G +  +I+Y+S++ A   A    + +E  E +K++   P + T N L+   C    
Sbjct: 196 MKLAGPAPDVITYNSIIHALCVAG---RVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGM 252

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           LP+ +EVL +M    + P+ ITY+IL+    R   V+V   LL +    G IP+++ +  
Sbjct: 253 LPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTS 312

Query: 407 II-GMC-SRRYEKARTL 421
           ++ G+C S   E+A  L
Sbjct: 313 LVDGLCKSGEIEEAHKL 329



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 108/455 (23%), Positives = 189/455 (41%), Gaps = 85/455 (18%)

Query: 9   LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFF 68
           +QF    G+   Y HDV    HSYN L+         D+L  ++        KVY     
Sbjct: 11  IQFFDWAGEQDGYKHDV----HSYNHLL---------DIL--VKSGHQFRTGKVYKDLLH 55

Query: 69  NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           + C                 +P L TF +L+     +  +  A + LR + E  +  D  
Sbjct: 56  SGC-----------------SPNLVTFKILIRGNCKAGQATRALEFLRALDEFSVAPDVY 98

Query: 129 LYTTLITTCAKSGKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
           ++  LI    K G  D    +FEN     V PD   +N +I+   +SG +++A ++L EM
Sbjct: 99  IFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEM 158

Query: 181 NAEVHPVDPDHITIGALMKA--CANAGQVDRAREVY----------------KMIHKYNI 222
                   PD +T   L+ A  C + G V+ A E+                  +IH   +
Sbjct: 159 IRRGGKSAPDIVTYNTLINAGICKD-GDVEEALEILDGMKLAGPAPDVITYNSIIHALCV 217

Query: 223 KG--------------TPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            G              +P++ T    ++   + G    A  V ++M ++ ++PD +  + 
Sbjct: 218 AGRVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTI 277

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK--------NWQKALE 317
           L++     G+V+ AF +L+E   QG    +I+Y+SL+ G C + +            A E
Sbjct: 278 LVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSARE 337

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           +   M SI + P + T N ++  L     + K + ++SD+ + G  P+ +TY+ L+    
Sbjct: 338 ILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLC 397

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + + V     L  +    G  PN V    ++ G+C
Sbjct: 398 KANRVREACDLADEMASLGCFPNDVTLGSVVFGLC 432



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 104/450 (23%), Positives = 192/450 (42%), Gaps = 98/450 (21%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V+  + +YN +I    + G + +  +LLE+M R+G                KS       
Sbjct: 128 VNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRG---------------GKSA------ 166

Query: 81  FRFFKLVPNPTLSTFNMLMS--VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
                    P + T+N L++  +C    D E A ++L  ++ AG   D   Y ++I    
Sbjct: 167 ---------PDIVTYNTLINAGICKDG-DVEEALEILDGMKLAGPAPDVITYNSIIHALC 216

Query: 139 KSGKVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            +G+V    E +K     PD V FN L+    ++G + RA +VL EM  E   + PD IT
Sbjct: 217 VAGRVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRE--NILPDVIT 274

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
                                              YTI +N   + G  + A  + +++ 
Sbjct: 275 -----------------------------------YTILVNGLCRVGQVQVAFYLLEEIV 299

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS---------YSSLMG 304
           ++G IPD +  ++L+D    +G++E A ++++E   + I   ++S         Y+ ++G
Sbjct: 300 RQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLG 359

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                 +  KA+ L   + +    P V T N LI  LC  +++ +  ++  +M SLG  P
Sbjct: 360 GLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFP 419

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNE 423
           N +T   ++    R   V+    L+ +       PN+V++  +I G+C     K+  +++
Sbjct: 420 NDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLC-----KSDRMDD 474

Query: 424 HVLSFNSGRPQIENKWTSLALMVYREAIVA 453
             +  ++ R Q      +L    YR+ IV+
Sbjct: 475 ACVVLDAMRGQ----GVALDDFAYRKLIVS 500


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 156/351 (44%), Gaps = 14/351 (3%)

Query: 82  RFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +  KL   P  +TF  L+  +C   K  E      +++ E G + +   Y TLI    K 
Sbjct: 116 KILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDE-GFQPNVVTYGTLINGLCKV 174

Query: 141 GKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G   A           N +PD V++ ++I +  +   V  AF++ ++M  +   + PD  
Sbjct: 175 GNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQ--GISPDIF 232

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T  +L+ A  N  +      +   +    I     +++  ++   + G    A  + D M
Sbjct: 233 TYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMM 292

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            ++GV PD V  + L+D      +++ A ++      +G +  +ISY++L+         
Sbjct: 293 IQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKI 352

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            KA+ L+E M   +  P   T N L+  LC   +L   + +  +M + G  P+ +TYSIL
Sbjct: 353 DKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSIL 412

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
           L +  +   +E  + LL   +   + P++ ++  II GMC +   E AR L
Sbjct: 413 LDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDL 463



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 167/367 (45%), Gaps = 24/367 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++  LIR    +G+I E + L + M  +G       Y      +CK       A R  + 
Sbjct: 128 TFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNT-SAAIRLLRS 186

Query: 87  V------PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK- 139
           +      P+  + T +++ S+C   + +E AF +   +   G+  D   YT+L+      
Sbjct: 187 MEQGNCQPDVVIYT-SIIDSLCKDRQVTE-AFNLFSQMVGQGISPDIFTYTSLVHALCNL 244

Query: 140 ------SGKVDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
                 +  ++ M  + + PD V+F+ ++ A  + G V  A +++  M      V+PD +
Sbjct: 245 CEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQR--GVEPDVV 302

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   LM       ++D A +V+ M+ +         YT  IN   +    + A  ++++M
Sbjct: 303 TYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEM 362

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            +K  IPD    + L+    H G+++ A  +  E   +G    +++YS L+ +     + 
Sbjct: 363 CRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHL 422

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           ++A+ L + +++  L P +   N +I  +C   +L    ++ S++ S GL P+  TY+I+
Sbjct: 423 EEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIM 482

Query: 373 LVA-CER 378
           +   C+R
Sbjct: 483 IHGLCKR 489



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 152/365 (41%), Gaps = 31/365 (8%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
           +H++  +      A+    R   + P P++  F  L++  A  K                
Sbjct: 27  FHSKSLHFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKH--------------- 71

Query: 123 LKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
                  Y+T+++    S ++D+    V P+    N LI +      V  AF VLA++  
Sbjct: 72  -------YSTVLSL---STQMDSF--GVPPNVYTLNILINSFCHLNRVGFAFSVLAKILK 119

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
             H   PD  T   L++     G++  A  ++  +     +     Y   IN   + G+ 
Sbjct: 120 LGH--QPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNT 177

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
             A  +   M +    PD V  +++ID      +V  AF +  +   QGIS  I +Y+SL
Sbjct: 178 SAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSL 237

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           + A  N   W+    L   M + K+ P V   + ++ ALC   ++ +  E++  M   G+
Sbjct: 238 VHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGV 297

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKART 420
            P+ +TY+ L+     + +++  + +       G  P+++ +  +I G C   + +KA  
Sbjct: 298 EPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMY 357

Query: 421 LNEHV 425
           L E +
Sbjct: 358 LFEEM 362



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 106/262 (40%), Gaps = 10/262 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P + T+  LM       + + A +V  ++   G   D   YTTLI    K  K+D    +
Sbjct: 299 PDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYL 358

Query: 147 FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE +      PD   +N L+      G +  A  +  EM A      PD +T   L+ + 
Sbjct: 359 FEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQM--PDLVTYSILLDSL 416

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                ++ A  + K I   N+    +VY I I+   + G+ E A  ++ +++ KG+ P  
Sbjct: 417 CKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSV 476

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + +I      G +  A ++  E      S    +Y+++           +A++L E 
Sbjct: 477 WTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEE 536

Query: 322 MKSIKLKPTVSTMNALITALCD 343
           M +      VST   L+  L D
Sbjct: 537 MLARGFSADVSTTTLLVEMLSD 558


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 111/489 (22%), Positives = 202/489 (41%), Gaps = 63/489 (12%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    ++G +     L  +++ KG L   + Y A     CK +   K   R    +
Sbjct: 242 YNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCK-KGDFKAIDRLLMEM 300

Query: 88  PNPTLSTFNMLMSVCASSKDSEG----AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +  L+    + +    ++   G    A + +  + E G K D   Y TLI+   + GKV
Sbjct: 301 NSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGKV 360

Query: 144 D--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                    A+ + + P++  +  LI A  + G  DRA + L EM    H   PD +T G
Sbjct: 361 SEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHK--PDLVTYG 418

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           AL+     AG+VD A  + + + +  +     +Y I ++   +      A  +  +M  +
Sbjct: 419 ALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQ 478

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG----------- 304
            V+PD    + L+D     G ++ A ++ +    +G++ GI+ Y++++            
Sbjct: 479 SVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDA 538

Query: 305 -ACSN-----------------------AKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
            AC N                         +   A +++  M  +K KP V T  +LI  
Sbjct: 539 MACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLING 598

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
            C    L +++++  +M++ GL PN +TYSIL+ +  ++  +        +   +  +PN
Sbjct: 599 FCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPN 658

Query: 401 LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE 460
            V F  ++   S+     R ++E       G    ENK  S+ L  +   I  G  P   
Sbjct: 659 DVTFNYLVNGFSK--NGTRAISE------KGNEFQENK-QSMFLNFFGRMISDGWAPRSA 709

Query: 461 VVSKVLGCL 469
             + +L CL
Sbjct: 710 AYNSILICL 718



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 141/326 (43%), Gaps = 48/326 (14%)

Query: 130 YTTLITTCAKS---GKVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           Y++L+   A+S    +++ + EN++     P R   + +I A   SG V++A + L    
Sbjct: 97  YSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALE-LYYFV 155

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVY-----------KMIHKYN----IKG-- 224
            + +   PD I   +L+      G+++ AR++Y           + +  Y+    +KG  
Sbjct: 156 LKTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCIMVKGLC 215

Query: 225 --------------------TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
                                P +  Y   I+   + GD E A  ++ ++  KG +P   
Sbjct: 216 KEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVE 275

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
              A+I+     G  +A   +L E  ++G++V +  Y++++ A     +  KA+E  E M
Sbjct: 276 TYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGM 335

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
                KP + T N LI+  C   ++ +  ++L      GL PN  +Y+ L+ A  ++   
Sbjct: 336 IECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGY 395

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII 408
           +     L +  E G  P+LV +  ++
Sbjct: 396 DRASNWLIEMTERGHKPDLVTYGALV 421



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 114/260 (43%), Gaps = 8/260 (3%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P+ + +N LI    + G ++ A  +  E+  ++    P   T GA++      G     +
Sbjct: 237 PNIIFYNTLIDGYCKKGDMEMANGLFIEL--KLKGFLPTVETYGAIINGFCKKGDF---K 291

Query: 212 EVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            + +++ + N +G     +VY   I+   + G    A    + M + G  PD V  + LI
Sbjct: 292 AIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLI 351

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
             +   GKV  A ++L++A  +G+     SY+ L+ A      + +A      M     K
Sbjct: 352 SGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHK 411

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P + T  AL+  L    ++   + +   M   G+ P+   Y+IL+    +K  +    +L
Sbjct: 412 PDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLL 471

Query: 389 LSQAKEDGVIPNLVMFKCII 408
           L++  +  V+P+  ++  ++
Sbjct: 472 LAEMLDQSVLPDAFVYATLV 491


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 164/422 (38%), Gaps = 83/422 (19%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFR-FFKLVPN 89
           N +  QG + E + LL D+   G       Y+A    +C +++   ++E      ++   
Sbjct: 237 NAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACP 296

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + TFN L+S    +   E   +VL  + E G   D ++Y T+I    K G ++   E 
Sbjct: 297 PNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEI 356

Query: 149 -------NVKP-----------------------------------DRVVFNALITACGQ 166
                   +KP                                   D V FN L+    Q
Sbjct: 357 LNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQ 416

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           +G VDR  ++L +M    H   PD IT   ++      G +D A  + K +     K   
Sbjct: 417 NGLVDRVIELLEQMLE--HGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNT 474

Query: 227 EVYTIA-----------------------------------INCCSQTGDWEFACSVYDD 251
             YTI                                    IN   + G  E A  +   
Sbjct: 475 ISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQ 534

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M   G  PD +  S +ID  G AGK + A E+L    N+G+S   I YSS+  A S    
Sbjct: 535 MLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGR 594

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             K ++++++++   ++      NA+I++LC   +  + +E L+ M S G  PN  TY+I
Sbjct: 595 INKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTI 654

Query: 372 LL 373
           L+
Sbjct: 655 LI 656



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 101/455 (22%), Positives = 191/455 (41%), Gaps = 27/455 (5%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  V    ++Y  ++R    +GRI++ + +L++M R+G   +  +YH      C+     
Sbjct: 152 AVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRG-GGF 210

Query: 78  KEAFRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           + A R  + +        +   N++++        + A  +LR +   G + D   Y  +
Sbjct: 211 RSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAV 270

Query: 134 I---TTCAKSGKVDAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +       + G V  + E +      P+ V FN LI+   ++G  +R  +VLA+M    H
Sbjct: 271 LKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVE--H 328

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
              PD      ++      G ++ A E+   +  Y +K     Y   +        WE  
Sbjct: 329 GCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEET 388

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +  +M  K    D+V  + L+DF    G V+   E+L++    G    +I+Y++++  
Sbjct: 389 EELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVING 448

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP- 364
                   +A+ L + M +   KP   +   ++  LC  ++     +++S M   G CP 
Sbjct: 449 FCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG-CPL 507

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTL 421
           N IT++ L+    +K  VE  + LL Q   +G  P+L+ +  +I   G   +  E    L
Sbjct: 508 NPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELL 567

Query: 422 NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 456
           N  V   N G       ++S+A  + RE  +   I
Sbjct: 568 NVMV---NKGMSPNTIIYSSIASALSREGRINKVI 599



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 125/267 (46%), Gaps = 7/267 (2%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +NA++    ++G ++ A  + A +     PV P+  T   +++A    G++  A  V   
Sbjct: 130 YNAMVAGYCRAGQLESARRLAAAV-----PVPPNAYTYFPVVRALCARGRIADALAVLDE 184

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           + +      P +Y + +    + G +  A  V +D+  +G   D    + +++     G 
Sbjct: 185 MPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGS 244

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           V+ A  +L++  + G    ++SY++++     AK W    EL E M  +   P + T N 
Sbjct: 245 VDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 304

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           LI+ LC      +  EVL+ M   G  P+   Y+ ++    ++  +EV   +L++    G
Sbjct: 305 LISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYG 364

Query: 397 VIPNLVMFKCII-GMCS-RRYEKARTL 421
           + PN+V +  ++ G+CS  R+E+   L
Sbjct: 365 LKPNVVCYNTLLKGLCSAERWEETEEL 391


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 155/360 (43%), Gaps = 22/360 (6%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           Y+     +CK+ K  K +    ++V     P   TFN +M     +   E A  +L ++ 
Sbjct: 13  YNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMA 72

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVD 171
           E   +  C  Y TLI+   K   VD     V         PD V ++ L     + G +D
Sbjct: 73  ERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRID 132

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
            AF+++ EM+   +   P+ +T   L+     A + ++A E+ + +           YTI
Sbjct: 133 EAFELVKEMSG--NGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTI 190

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            ++   + G  + A  + + M K+G  P  +  +AL++     G+V+ A  I +E  ++ 
Sbjct: 191 IVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKD 250

Query: 292 ISVGIISYSSLM-GAC--SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +   ++Y SL+ G C  S  K  QK ++       I+  P +   NAL+   C   +L 
Sbjct: 251 CTADALAYVSLVNGYCKSSRTKEAQKVVD------GIRGTPYIDVYNALMDGYCKEGRLD 304

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +   V  DM   G  PN  TY+I++    +   V+     L      G +P++V +  II
Sbjct: 305 EIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIII 364



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 111/224 (49%), Gaps = 2/224 (0%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V PD   +N LI    ++   D+A ++L EM      V PD +T  ++M     AG+ +R
Sbjct: 6   VAPDVFTYNILIDGLCKASKTDKASEMLHEMVD--RGVTPDTVTFNSIMDGLCKAGKFER 63

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A  +  ++ + N + +   Y   I+   +  + + A ++ D+    G +PD V  S L D
Sbjct: 64  AHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILAD 123

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G+++ AFE+++E    G +  +++Y++L+     A   +KA EL E + S    P
Sbjct: 124 GLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVP 183

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            V T   ++  LC   +L K ++++  M   G  P+ ITY+ L+
Sbjct: 184 DVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALM 227



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/362 (23%), Positives = 166/362 (45%), Gaps = 28/362 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    +Q  +     L+++    G +     Y      +CK  + I EAF   K 
Sbjct: 82  TYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGR-IDEAFELVKE 140

Query: 87  VP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +      P L T+N L+  +C +SK +E A+++L  +  +G   D   YT ++    K G
Sbjct: 141 MSGNGCTPNLVTYNTLIDGLCKASK-TEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEG 199

Query: 142 KVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++D   + V+        P  + + AL+    ++G VD A  +  EM ++      D + 
Sbjct: 200 RLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSK--DCTADALA 257

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTP--EVYTIAINCCSQTGDWEFACSVYDD 251
             +L+     +    R +E  K++    I+GTP  +VY   ++   + G  +   +V++D
Sbjct: 258 YVSLVNGYCKSS---RTKEAQKVVD--GIRGTPYIDVYNALMDGYCKEGRLDEIPNVFED 312

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M  +G +P+    + ++D     GKV+ AF  L+   + G    ++SY+ ++     A  
Sbjct: 313 MACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASK 372

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            ++A ++ + M    + P   T N L+   C  ++    + +L +M   G+ P+ +TY+ 
Sbjct: 373 PKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNT 432

Query: 372 LL 373
           L+
Sbjct: 433 LI 434



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 170/359 (47%), Gaps = 22/359 (6%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN L+    ++GR+ E  ++ EDM  +G +   K Y+     +CK  K + EAF F + +
Sbjct: 290 YNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGK-VDEAFPFLESM 348

Query: 88  PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P + ++N+++     +   + A QVL  + +AG+  D   Y TL+    K  + 
Sbjct: 349 HSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERF 408

Query: 144 D---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D    + +N     V PD V +N LI+   Q+  +  A++++ EM      V     T  
Sbjct: 409 DDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSA-CTTYN 467

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++      G + +A  +   +  + ++     Y I I+   + G  + A S+  +M   
Sbjct: 468 TIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM--- 524

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGACSNAKNWQK 314
             + DEV  + +I     A +++ A ++ +E    +G+ +   +++ L+ A +  K   +
Sbjct: 525 DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDE 584

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           AL L E M      P+V T N +IT LC  D++ K  E+  +M   G+  ++++Y++L+
Sbjct: 585 ALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLI 643



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 2/178 (1%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M ++ V PD    + LID    A K + A E+L E  ++G++   ++++S+M     A  
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           +++A  L   M     +P+  T N LI+ LC    + +   ++ +  S G  P+ +TYSI
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLS 427
           L     ++  ++    L+ +   +G  PNLV +  +I G+C + + EKA  L E ++S
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVS 178



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 75/369 (20%), Positives = 142/369 (38%), Gaps = 54/369 (14%)

Query: 5   GKNMLQFPYPNGKH-ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY 63
           GK    FP+    H A    DV       + L +  +  E   +L+ M + G+      Y
Sbjct: 336 GKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTY 395

Query: 64  HARFFNVCKSQK---AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLR-LVQ 119
           +      CK ++   A+       K   +P   T+N L+S  + +     A++++  +++
Sbjct: 396 NTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLR 455

Query: 120 EAGLKADCKLYTTLITTCAKSG-------KVDAMF-ENVKPDRVVFNALITACGQSGAVD 171
              + + C  Y T+I    K G        +D M    V+ + V +N  I    + G +D
Sbjct: 456 NGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLD 515

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI----------HKYN 221
            A  +L+EM+     V    + IG        A Q+DRA ++ + +          H +N
Sbjct: 516 EASSLLSEMDTLRDEVSYTTVIIGL-----CKAEQLDRASKLAREMVAVKGLCITSHTFN 570

Query: 222 I-----------------------KG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKK 255
           +                       +G +P V  Y + I C  +    + A  ++D+M  +
Sbjct: 571 LLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVR 630

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G++   V  + LI      G+ + A ++L+E  +    +  +    L  A       ++A
Sbjct: 631 GIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEA 690

Query: 316 LELYEHMKS 324
            EL   M +
Sbjct: 691 AELLRRMTT 699


>gi|298712109|emb|CBJ32990.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 650

 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 99/437 (22%), Positives = 180/437 (41%), Gaps = 58/437 (13%)

Query: 30  HSYNR----LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN     + + GR  E + L + M  +G+  +D    +     C     + +     +
Sbjct: 59  YAYNSALSSIAKSGRWREALALRDRMLSEGV-RLDGYTFSALIEACSKGGNVAKGVELLR 117

Query: 86  LVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            + +  ++    ++N  +     + DS+ A  +L  +   G++ D   Y TL+  C  SG
Sbjct: 118 EMVDAGVARDCFSYNAALHGFVRNGDSKNALLMLEDMVADGVRPDAITYGTLLACCGNSG 177

Query: 142 K-------VDAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +       +D M  E + P+   F+ LI ACG+ G    A   L +M A   P   +H  
Sbjct: 178 EWKLCMSLMDRMRSEGITPNAYSFSPLIKACGKEGRWALAVKTLEDMEAS-GPTPNEHNW 236

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKG-----TPEVYTIAINCCSQTGDWEFACSV 248
           + A+  AC NAGQ + A  +   +    + G     +  +Y   I+ C++ G W+   ++
Sbjct: 237 LMAI-GACGNAGQWEEALRLIDKLEALALGGEGVPMSTTMYNFGIDACARAGRWDQGVAL 295

Query: 249 YDDM-TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
            + M +     PD    S LID       +E A   L E +  G++    +Y S M A  
Sbjct: 296 LERMKSNPATPPDAQTYSYLIDACAKDANLEDALAYLTEMRAVGLAPTFFAYISAMSAIK 355

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM---------------- 351
            A  W++AL L + M   +L   V +   ++ A     QL +T+                
Sbjct: 356 VAGQWKEALSLLDEMAKGRLISDVFSFYNVVDAYGKDGQLARTLVQTSANPTEIAADSEN 415

Query: 352 -----------------EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
                            E++  M++ G+  + ++++IL+ AC R         LL++ K 
Sbjct: 416 EMRSDADLNAWRAEDPDELVKRMENNGVELDVMSFNILIDACARGGSHWAAARLLTKMKS 475

Query: 395 DGVIPNLVMFKCIIGMC 411
            G+ PN + +  II  C
Sbjct: 476 LGLRPNSLSYNPIIHSC 492



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 143/309 (46%), Gaps = 19/309 (6%)

Query: 113 QVLRLVQ---EAGLKADCKLYTTLITTCAKSGKV-------DAMF-ENVKPDRVVFNALI 161
           +VLRL+    E G+  +   Y + +++ AKSG+        D M  E V+ D   F+ALI
Sbjct: 41  EVLRLLDKMAEDGIPLNSYAYNSALSSIAKSGRWREALALRDRMLSEGVRLDGYTFSALI 100

Query: 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
            AC + G V +  ++L EM      V  D  +  A +      G    A  + + +    
Sbjct: 101 EACSKGGNVAKGVELLREMVD--AGVARDCFSYNAALHGFVRNGDSKNALLMLEDMVADG 158

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           ++     Y   + CC  +G+W+   S+ D M  +G+ P+    S LI   G  G+   A 
Sbjct: 159 VRPDAITYGTLLACCGNSGEWKLCMSLMDRMRSEGITPNAYSFSPLIKACGKEGRWALAV 218

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK----PTVSTM-NA 336
           + L++ +  G +    ++   +GAC NA  W++AL L + ++++ L     P  +TM N 
Sbjct: 219 KTLEDMEASGPTPNEHNWLMAIGACGNAGQWEEALRLIDKLEALALGGEGVPMSTTMYNF 278

Query: 337 LITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            I A     +  + + +L  MKS     P+  TYS L+ AC +  ++E  L  L++ +  
Sbjct: 279 GIDACARAGRWDQGVALLERMKSNPATPPDAQTYSYLIDACAKDANLEDALAYLTEMRAV 338

Query: 396 GVIPNLVMF 404
           G+ P    +
Sbjct: 339 GLAPTFFAY 347



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 106/494 (21%), Positives = 192/494 (38%), Gaps = 103/494 (20%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           +  ++   +S++ LI+    +GR +  +  LEDME  G                      
Sbjct: 191 SEGITPNAYSFSPLIKACGKEGRWALAVKTLEDMEASG---------------------- 228

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE-----AGLKADCKLYTT 132
                     P P    + M +  C ++   E A +++  ++       G+     +Y  
Sbjct: 229 ----------PTPNEHNWLMAIGACGNAGQWEEALRLIDKLEALALGGEGVPMSTTMYNF 278

Query: 133 LITTCAKSGKVD---AMFENVK------PDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
            I  CA++G+ D   A+ E +K      PD   ++ LI AC +   ++ A   L EM A 
Sbjct: 279 GIDACARAGRWDQGVALLERMKSNPATPPDAQTYSYLIDACAKDANLEDALAYLTEMRA- 337

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREV----------------YKMIHKYNIKGT-- 225
              + P      + M A   AGQ   A  +                Y ++  Y   G   
Sbjct: 338 -VGLAPTFFAYISAMSAIKVAGQWKEALSLLDEMAKGRLISDVFSFYNVVDAYGKDGQLA 396

Query: 226 ----------PEVYTIAINCCSQTGD---W--EFACSVYDDMTKKGVIPDEVFLSALIDF 270
                      E+   + N      D   W  E    +   M   GV  D +  + LID 
Sbjct: 397 RTLVQTSANPTEIAADSENEMRSDADLNAWRAEDPDELVKRMENNGVELDVMSFNILIDA 456

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN--WQKALELYEHMKSIKLK 328
               G   AA  +L + K+ G+    +SY+ ++ +C    +  W+ AL+L + M+   L 
Sbjct: 457 CARGGSHWAAARLLTKMKSLGLRPNSLSYNPIIHSCRGGTDEEWRLALDLLDEMRKSGLT 516

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P V + N  IT+        +++ + + MK  G+ P+ ++Y+ ++ AC +     +GL L
Sbjct: 517 PDVISFNTAITSCAKAGDWRRSLNLFAGMKVEGVTPDILSYNAVISACAKGGQWRIGLEL 576

Query: 389 LSQAKEDGVI-PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVY 447
           L++ + D  +  N   +   I  C ++++  ++    V S  S          +LA    
Sbjct: 577 LAKVRADPTLEANQRTYTSAIN-CFQQFQGGQS----VASLAS----------TLAGQSS 621

Query: 448 REAIVAGTIPTVEV 461
           RE ++   IPT +V
Sbjct: 622 REEMLLNPIPTSDV 635



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 5/222 (2%)

Query: 205 GQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           G   + REV +++ K    G P     Y  A++  +++G W  A ++ D M  +GV  D 
Sbjct: 34  GARGQWREVLRLLDKMAEDGIPLNSYAYNSALSSIAKSGRWREALALRDRMLSEGVRLDG 93

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              SALI+     G V    E+L+E  + G++    SY++ +       + + AL + E 
Sbjct: 94  YTFSALIEACSKGGNVAKGVELLREMVDAGVARDCFSYNAALHGFVRNGDSKNALLMLED 153

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M +  ++P   T   L+    +  +    M ++  M+S G+ PN  ++S L+ AC ++  
Sbjct: 154 MVADGVRPDAITYGTLLACCGNSGEWKLCMSLMDRMRSEGITPNAYSFSPLIKACGKEGR 213

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 421
             + +  L   +  G  PN   +   IG C    ++E+A  L
Sbjct: 214 WALAVKTLEDMEASGPTPNEHNWLMAIGACGNAGQWEEALRL 255


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 184/411 (44%), Gaps = 15/411 (3%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV       N   ++G + +      +M  +G+L     Y +    +CK+Q   K     
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +V N   P   T+N ++    SS   + A   L+ +   G++ D   Y +L+    K+
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 141 GKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+      MF++     +KP+   +  L+      GA+     +L  M    + + P+H 
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPNHY 375

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
               L+ A A  G+VD+A  V+  + +  +      Y   I    ++G  E A   ++ M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             + + P  +  ++LI       K + A E++ E  ++GI +  I ++S++ +       
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            ++ +L++ M  I +KP + T + LI   C   ++ +  ++L+ M S+G+ P+ +TY+ L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 421
           +    +   +E  L+L  + +  GV P+++ +  I+     +RR   A+ L
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 208/478 (43%), Gaps = 46/478 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           P L T+ +L+  C  +   +  F  L  V + G + D   +T L+   CA     DAM  
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            ++        P+   +N L+           A ++L  M  +     PD ++   ++  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 201 CANAGQVDRAREVYKMIHKYNIKGT-PEVYT----IAINCCSQTGDWEFACSVYDDMTKK 255
               G +D+A   Y   H+   +G  P V T    IA  C +Q  D   A  V   M K 
Sbjct: 209 FFKEGDLDKA---YGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK--AMEVLTSMVKN 263

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG-ACSNAKNWQK 314
           GV+P+    ++++     +G+ + A   L++  + G+   +++Y+SLM   C N +   +
Sbjct: 264 GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGR-CTE 322

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ++++ M    LKP ++T   L+        L +   +L  M   G+ PN   +SIL+ 
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILIC 382

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNEHVLS----- 427
           A  ++  V+  +++ S+ ++ G+ P+ V +  +IG +C S R E A    E ++      
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 428 ----FNS--GRPQIENKW---TSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR 478
               +NS      I +KW     L L +    I   TI    ++       ++  +  + 
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 479 ERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP-CVSFKEI 532
           + +V  +GV  D +  S   +LIDG+   G+ D  A  LL    S G+ P CV++  +
Sbjct: 503 DLMVR-IGVKPDIITYS---TLIDGYCLAGKMD-EATKLLASMVSVGMKPDCVTYNTL 555



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 175/400 (43%), Gaps = 19/400 (4%)

Query: 21  YAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           ++  V   + +YN L+    + GR +E   + + M ++GL      Y         ++ A
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY-GTLLQGYATKGA 354

Query: 77  IKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           + E      L+     +P    F++L+   A     + A  V   +++ GL  D   Y T
Sbjct: 355 LVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414

Query: 133 LITTCAKSGKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           +I    KSG+V DAM        E + P  +V+N+LI +       D+A +++ EM    
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLD-- 472

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             +  D I   +++ +    G+V  + +++ ++ +  +K     Y+  I+     G  + 
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 532

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  +   M   G+ PD V  + LI+      ++E A  + +E ++ G+S  II+Y+ ++ 
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                +    A ELY  +     +  +ST N ++  LC  +   + + +  ++    L  
Sbjct: 593 GLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            T T++I++ A  +    +    L +    +G++P++  +
Sbjct: 653 ETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTY 692


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 169/424 (39%), Gaps = 58/424 (13%)

Query: 58  DMDKVYHARFFNV-----CKSQK---AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109
           D DK     F NV     C+S     A++E  R       P+ ST+N L+     +   +
Sbjct: 193 DDDKEVFGEFLNVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLD 252

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-----ENVKPDRVVFNALITAC 164
            A  V R +  A L+ D         +  K GK          EN  PD V +  LI+  
Sbjct: 253 SASLVHREMSLANLRMDGFTLRCYAYSLCKVGKWREALTLMETENFVPDTVFYTKLISGL 312

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
            ++   + A D L  M A      P+ +T   L+  C N  Q+ R + V  M+       
Sbjct: 313 CEASLFEEAMDFLNRMRAT--SCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYP 370

Query: 225 TPEVYTIAINCCSQTGDWEFA----------------------------------CSV-- 248
           +P+++   ++    +GD  +A                                  C +  
Sbjct: 371 SPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLE 430

Query: 249 -----YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
                Y +M   GV+ +++ +S+       AGK E AF +++E   QG      +YS ++
Sbjct: 431 LAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVL 490

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
           G   NA   + A  L+E MK   L   V T   ++ + C    + +  +  ++M+ +G  
Sbjct: 491 GYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCT 550

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
           PN +TY+ L+ A  +   V     L      +G +PN+V +  +I G C + + EKA  +
Sbjct: 551 PNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQI 610

Query: 422 NEHV 425
            E +
Sbjct: 611 FERM 614



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 154/349 (44%), Gaps = 27/349 (7%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P  ST++ ++    ++   E AF +   ++  GL AD   YT ++ +  K+G ++     
Sbjct: 481 PDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F  ++     P+ V + ALI A  ++  V  A ++   M +E     P+ +T  AL+   
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSE--GCLPNIVTYSALIDGH 598

Query: 202 ANAGQVDRAREVYKMI-------------HKYNIKGTPE----VYTIAINCCSQTGDWEF 244
             AGQ+++A ++++ +              +Y+   +      +Y   ++   +    E 
Sbjct: 599 CKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEE 658

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  + D M+ +G  P+++   ALID     GK++ A E+  E    G    + +YSSL+ 
Sbjct: 659 ARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLID 718

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                K    A ++   M      P V     +I  LC   +  +  +++  M+  G  P
Sbjct: 719 RYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQP 778

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           N +TY+ ++    R   +E  L LL +    GV PN V ++ +I  C +
Sbjct: 779 NVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCK 827



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 179/431 (41%), Gaps = 45/431 (10%)

Query: 31  SYNRLIRQGRISECIDLLEDMERK---GLLDMDK-VYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN LI+    ++C+D    + R+     L MD        +++CK  K  +EA    + 
Sbjct: 237 TYNCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYAYSLCKVGKW-REALTLMET 295

Query: 86  --LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
              VP+    T  ++  +C +S   E A   L  ++      +   Y+TL+  C    ++
Sbjct: 296 ENFVPDTVFYT-KLISGLCEASLFEE-AMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQL 353

Query: 144 D--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                     M E   P   +FN+L+ A   SG    A+ +L +M    H   P ++   
Sbjct: 354 GRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHT--PGYVVYN 411

Query: 196 ALMKA-CANAGQV-----DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
            L+ + C +   +     + A + Y  +    +       +    C    G +E A SV 
Sbjct: 412 ILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVI 471

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
            +M  +G IPD    S ++ +  +A K+E AF + +E K  G+   + +Y+ ++ +   A
Sbjct: 472 REMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKA 531

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
              ++A + +  M+ +   P V T  ALI A     ++    E+   M S G  PN +TY
Sbjct: 532 GLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTY 591

Query: 370 SILLVA-----------------CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           S L+                   C  KD  +V +       ++   PN+V++  ++ G C
Sbjct: 592 SALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFC 651

Query: 412 S-RRYEKARTL 421
              R E+AR L
Sbjct: 652 KLHRVEEARKL 662



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 92/417 (22%), Positives = 179/417 (42%), Gaps = 51/417 (12%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H+Y   ++  ++S   +L E M  +G L     Y A     CK+ +  K    F ++  
Sbjct: 560 IHAY---LKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCG 616

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM- 146
           +  +   +M         D + + +   ++  A L   CKL+        ++ K+ DAM 
Sbjct: 617 SKDVPDVDMYFK----QYDDDNSERPNVVIYGALLDGFCKLHRV-----EEARKLLDAMS 667

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
            E  +P+++V++ALI    + G +D A +V AEM+    P      T  +L+       +
Sbjct: 668 MEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATL--YTYSSLIDRYFKVKR 725

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
            D A +V   + + +      +YT  I+   + G  + A  +   M +KG  P+ V  +A
Sbjct: 726 QDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTA 785

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC-------------------- 306
           +ID  G  GK+E   E+L+   ++G++   ++Y  L+  C                    
Sbjct: 786 MIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTH 845

Query: 307 --SNAKNWQKALELY--EHMKSIKL---------KPTVSTMNALITALCDGDQLPKTMEV 353
             ++A  ++K +E +  E ++S+ L          P +S    L+  L    +L   + +
Sbjct: 846 WPTHAAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRL 905

Query: 354 LSDMKSLG--LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L ++ +    L   + TY+ L+ +    + V+    L S+  + GVIP +  F  +I
Sbjct: 906 LEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPEMQTFCSLI 962



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/395 (21%), Positives = 143/395 (36%), Gaps = 81/395 (20%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
           T   +N L+ +     D +   ++L+ +++   +   +    L+    +SG      E +
Sbjct: 164 TSPVYNALVDLIVRDDDEKVPEELLQQIRDDDKEVFGEFLNVLVRKYCRSGSFSIALEEL 223

Query: 151 --------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                   +P R  +N LI A  ++  +D A  V  EM+     +D      G  ++  A
Sbjct: 224 GRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSLANLRMD------GFTLRCYA 277

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
                                     Y++      + G W  A ++   M  +  +PD V
Sbjct: 278 --------------------------YSLC-----KVGKWREALTL---METENFVPDTV 303

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
           F + LI     A   E A + L   +       +++YS+L+  C N K   +   +   M
Sbjct: 304 FYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMM 363

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDD 381
                 P+    N+L+ A C         ++L  M   G  P  + Y+IL+ + C  KD 
Sbjct: 364 MMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDS 423

Query: 382 VEVGLMLL-----SQAKEDGVIPNLVMFKCIIG-MCSR-RYEKARTLNEHVLSFNSGRPQ 434
           +   L+ L     S+    GV+ N +        +CS  +YEKA +              
Sbjct: 424 LSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFS-------------- 469

Query: 435 IENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
                      V RE I  G IP     SKVLG L
Sbjct: 470 -----------VIREMIGQGFIPDTSTYSKVLGYL 493


>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 576

 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/411 (21%), Positives = 172/411 (41%), Gaps = 19/411 (4%)

Query: 14  PNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           P  +H ++    +  + + NRL + G+ +E +  LE M ++G    D +   +      +
Sbjct: 68  PQQQHYDFRD--THHMKALNRLCKTGKYTEALYFLEQMVKRGY-KPDVILCTKLIKGLFT 124

Query: 74  QKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
            K  ++A R  +++    +P    +N ++S    S   + A +V+  ++  G   D   Y
Sbjct: 125 SKRTEKAVRVMEILEQYGDPDSFAYNAVISGFCRSDRFDAANRVILRMKYRGFSPDVVTY 184

Query: 131 TTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
             LI +    GK+D           +N  P  + +  LI A    G++D A  +L EM +
Sbjct: 185 NILIGSLCARGKLDLALKVMDQLLEDNCNPTVITYTILIEATIIHGSIDDAMRLLDEMMS 244

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
               + PD  T   +++     G VDRA   ++ +   N   +  +Y + +      G W
Sbjct: 245 --RGLQPDMYTYNVIVRGMCKRGLVDRA---FEFVSNLNTTPSLNLYNLLLKGLLNEGRW 299

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           E    +  DM  KG  P+ V  S LI      GK   A ++L+  K +G++     Y  L
Sbjct: 300 EAGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPL 359

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           + A         A+   + M S    P +   N ++ +LC   +  + + +   ++ +G 
Sbjct: 360 ISAFCKEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGC 419

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            PN  +Y+ +  A     D    L ++ +   +GV P+ + +  +I    R
Sbjct: 420 PPNASSYNTMFGALWSSGDKIRALTMILEMLSNGVDPDRITYNSLISSLCR 470



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 90/421 (21%), Positives = 178/421 (42%), Gaps = 54/421 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQK-------AIKEAFRFFKL 86
           L    R  + + ++E +E+ G  D D   Y+A     C+S +        ++  +R F  
Sbjct: 122 LFTSKRTEKAVRVMEILEQYG--DPDSFAYNAVISGFCRSDRFDAANRVILRMKYRGF-- 177

Query: 87  VPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD- 144
             +P + T+N+L+ S+CA  K  + A +V+  + E         YT LI      G +D 
Sbjct: 178 --SPDVVTYNILIGSLCARGK-LDLALKVMDQLLEDNCNPTVITYTILIEATIIHGSIDD 234

Query: 145 -------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-------------- 183
                   M   ++PD   +N ++    + G VDRAF+ ++ +N                
Sbjct: 235 AMRLLDEMMSRGLQPDMYTYNVIVRGMCKRGLVDRAFEFVSNLNTTPSLNLYNLLLKGLL 294

Query: 184 ----------------VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                           V   +P+ +T   L+ +    G+   A +V +++ +  +     
Sbjct: 295 NEGRWEAGERLMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAY 354

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y   I+   + G  + A    DDM   G +PD V  + ++      G+ + A  I ++ 
Sbjct: 355 CYDPLISAFCKEGKVDLAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKL 414

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           +  G      SY+++ GA  ++ +  +AL +   M S  + P   T N+LI++LC    +
Sbjct: 415 EEVGCPPNASSYNTMFGALWSSGDKIRALTMILEMLSNGVDPDRITYNSLISSLCRDGMV 474

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            + + +L DM+     P  I+Y+I+L+   +   +   + +L+   ++G  PN   +  +
Sbjct: 475 DEAIGLLVDMERTEWQPTVISYNIVLLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLL 534

Query: 408 I 408
           +
Sbjct: 535 V 535



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 92/236 (38%), Gaps = 43/236 (18%)

Query: 90  PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           P + T+++L+S +C   K  E A  VLR+++E GL  D   Y  LI+   K GKVD    
Sbjct: 316 PNIVTYSVLISSLCRDGKAGE-AVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVDLAIG 374

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-------------- 186
            V         PD V +N ++ +  + G  D A ++  ++     P              
Sbjct: 375 FVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNASSYNTMFGALW 434

Query: 187 -------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
                              VDPD IT  +L+ +    G VD A  +   + +   + T  
Sbjct: 435 SSGDKIRALTMILEMLSNGVDPDRITYNSLISSLCRDGMVDEAIGLLVDMERTEWQPTVI 494

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
            Y I +    +      A  V   M   G  P+E   + L++  G+AG    A E+
Sbjct: 495 SYNIVLLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLVEGVGYAGWRSYAVEL 550


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 106/438 (24%), Positives = 192/438 (43%), Gaps = 35/438 (7%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + FKL   PT  TF  L++   S      A ++   + + G       YTT+I    K G
Sbjct: 131 KMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIG 190

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
                 +          KPD V +N +I +  +    + A    +EM  +  P  P+ +T
Sbjct: 191 HTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIP--PNVVT 248

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +++    N GQ++ A  ++K +   N+      +TI ++   + G    A  V++ MT
Sbjct: 249 YSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMT 308

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + GV PD    SAL+D      +++ A ++      +G +  +  Y+ L+     ++   
Sbjct: 309 ENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLN 368

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A  L   M    L P   T + L+   C   +     ++  +M S GL P++ITYSILL
Sbjct: 369 EAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILL 428

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSG 431
               +   ++    LL   +E  + P++ ++  +I GMC+  + E AR L  ++  F  G
Sbjct: 429 DGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNL--FVKG 486

Query: 432 -RPQI-----------ENKWTSLALMVYREAIVAGTIPTVEVVS-KVLGCLQL--PYNAD 476
            +P +           +   ++ A  ++R+ +V G +P     +  + G L+   P NA 
Sbjct: 487 IQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNA- 545

Query: 477 IRERLVENL---GVSADA 491
              RL+E +   G SAD+
Sbjct: 546 --VRLIEEMVGRGFSADS 561



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 79/383 (20%), Positives = 175/383 (45%), Gaps = 21/383 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFKLVPN 89
           N L  + +I + + L +++ + G       Y      +CK   +  A++   +  +    
Sbjct: 149 NGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCK 208

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---A 145
           P +  +N ++ S+C   + +E  +    +V + G+  +   Y++++      G+++   +
Sbjct: 209 PDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQ-GIPPNVVTYSSILHGFCNLGQLNEATS 267

Query: 146 MFE-----NVKPDRVVFNALITACGQSGAV---DRAFDVLAEMNAEVHPVDPDHITIGAL 197
           +F+     NV P+ V F  L+    + G +    R F+++ E     + V+PD  T  AL
Sbjct: 268 LFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTE-----NGVEPDAYTYSAL 322

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           M       Q+D A++++ ++       +  VY I IN   ++     A ++  +M  + +
Sbjct: 323 MDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDL 382

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD V  S L+     AG+ + A ++ +E  + G+    I+YS L+       +  +A  
Sbjct: 383 TPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFR 442

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L + M+  K++P +   N LI  +C+  +L    E+ S++   G+ P+ +TY++++    
Sbjct: 443 LLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLL 502

Query: 378 RKDDVEVGLMLLSQAKEDGVIPN 400
           ++        +  +   +G +PN
Sbjct: 503 KEGLSNEACEMFRKMVVNGCLPN 525



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 109/270 (40%), Gaps = 13/270 (4%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA--EVHPVDPDHITIGALMKACANAGQ 206
           N+ P  +        C     +    D +A  N    + P+ P  +    L+ +      
Sbjct: 29  NISPSSITNGGF---CSNYNNLHSVADAVASFNQLLGIRPLPPV-VVFNKLLGSLVKKKH 84

Query: 207 VDRAREVYKMIHKYNIKGTPEVYT--IAINC-CSQTGDW-EFACSVYDDMTKKGVIPDEV 262
                 + K +   NI+  P VYT  I INC C    D   FA S    M K G+ P  V
Sbjct: 85  YSTVISLCKQMDLSNIR--PNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHV 142

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
               L++      K+  A ++  E    G +  +I+Y++++       +   AL+L + M
Sbjct: 143 TFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKM 202

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           +    KP V   N +I +LC   +  + M   S+M   G+ PN +TYS +L        +
Sbjct: 203 EEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQL 262

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
                L  Q     V+PN V F  ++ G+C
Sbjct: 263 NEATSLFKQMIGRNVMPNTVTFTILVDGLC 292



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 122/286 (42%), Gaps = 15/286 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L ++G I E   + E M   G+      Y A     C  Q  + EA + F ++      P
Sbjct: 291 LCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCL-QSQMDEAQKLFDIMVGKGFAP 349

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDAMF 147
           ++  +N+L++    S+    A  +L  + +  L  D   Y+TL+    ++G+      +F
Sbjct: 350 SVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLF 409

Query: 148 E-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +      + PD + ++ L+    + G +D AF +L  M      ++P       L++   
Sbjct: 410 KEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQES--KIEPHICIYNILIQGMC 467

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           N G+++ ARE++  +    I+ +   YT+ I+   + G    AC ++  M   G +P+  
Sbjct: 468 NFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSC 527

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
             +  I      G    A  +++E   +G S    ++  L+   SN
Sbjct: 528 TYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLDLESN 573


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 156/371 (42%), Gaps = 13/371 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L++ GR      + E+M   GL      +       C+    ++    F ++      PT
Sbjct: 157 LVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPT 216

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------- 143
           +  + +L+    S    E A  + R ++E G+  +   Y TL+    K            
Sbjct: 217 VIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQ 276

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           D + E + PD V F  LI    + G +  A ++   M      V P+     +L+ A   
Sbjct: 277 DMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIK--FSVTPNIAVYNSLIDAYCK 334

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G V  A  ++  + ++ +      Y+I I         E A ++++ MTK+G++ + V 
Sbjct: 335 VGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVT 394

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            ++LID     GK++ A EI  +    G+   +I++S+L+      +N Q A+ +Y  M 
Sbjct: 395 YNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMV 454

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              L P V T  A+I   C    + + +++ SDM   G+ PN  T S LL    +   + 
Sbjct: 455 IKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKIS 514

Query: 384 VGLMLLSQAKE 394
             L L ++  E
Sbjct: 515 DALELFTEKIE 525



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 156/358 (43%), Gaps = 12/358 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
           +P++ TF  L+  C    D   A ++   ++  G+     +YT LI       K++    
Sbjct: 179 SPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAES 238

Query: 145 ---AMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              AM E  V P+   +N L+    +     +A  +  +M  E   + PD +T G L+  
Sbjct: 239 MHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGE--GLVPDVVTFGILIDG 296

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G++  AR ++  + K+++     VY   I+   + GD   A +++ ++ +  V PD
Sbjct: 297 LCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPD 356

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               S LI       + E A  I ++   +GI    ++Y+SL+  C       KALE+  
Sbjct: 357 VFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICS 416

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    ++P V T + LI   C    L   M + S+M    L P+ +TY+ ++    +  
Sbjct: 417 QMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYG 476

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIE 436
            ++  L L S   ++G+ PN     C++ G+C   +   A  L    + F + R  ++
Sbjct: 477 SMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVD 534



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 176/428 (41%), Gaps = 73/428 (17%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-----AIKEAFRFFKLVPNPT 91
           RQG +    ++ ++M  KG++    VY      +C   K     ++  A R   + PN  
Sbjct: 194 RQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPN-- 251

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEA---GLKADCKLYTTLITTCAKSGKVDA--- 145
           + T+N LM       +++   Q LRL Q+    GL  D   +  LI    K G++ A   
Sbjct: 252 VYTYNTLMDGYCKLANAK---QALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARN 308

Query: 146 MFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +F N     V P+  V+N+LI A  + G V  A  +  E+  E   V PD  T   L++ 
Sbjct: 309 LFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLEL--ERFEVSPDVFTYSILIRG 366

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             +  + + A  +++ + K  I      Y   I+ C + G  + A  +   MT+ GV P+
Sbjct: 367 LCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPN 426

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  S LID       ++AA  I  E   + +S  +++Y++++       + ++AL+LY 
Sbjct: 427 VITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYS 486

Query: 321 HMKSIKLKPTVSTMN--------------------------------------------- 335
            M    + P   T++                                             
Sbjct: 487 DMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHV 546

Query: 336 ---ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
              ALI  LC   Q  K +++ SDM+  GL P+ + Y ++L    +     + +ML +  
Sbjct: 547 AYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQVK--YILMMLHADM 604

Query: 393 KEDGVIPN 400
            + GVIPN
Sbjct: 605 LKFGVIPN 612



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 2/204 (0%)

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +++   E   M HK     T +   + +    +TG +E    +Y++M   G+ P  +   
Sbjct: 127 KMELVEEALSMYHKVGAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFG 186

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKS 324
            LID     G +  A E+  E + +GI   +I Y+ L+ G CS+ K  ++A  ++  M+ 
Sbjct: 187 TLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNK-IEEAESMHRAMRE 245

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
           + + P V T N L+   C      + + +  DM   GL P+ +T+ IL+    +  +++ 
Sbjct: 246 VGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKA 305

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII 408
              L     +  V PN+ ++  +I
Sbjct: 306 ARNLFVNMIKFSVTPNIAVYNSLI 329


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 115/518 (22%), Positives = 223/518 (43%), Gaps = 42/518 (8%)

Query: 28  QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            L SYN +I     +G++ +  +L  DM  +G+      Y      +CK+Q   +    F
Sbjct: 203 NLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVF 262

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            +++     P + T+  L+    S    +   ++L+ +   GL+ DC  Y  L+    K 
Sbjct: 263 QQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKK 322

Query: 141 GK-------VDAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           GK        D+M  + +KPD  ++  ++      GA+      L  M    + + P+H 
Sbjct: 323 GKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVG--NGISPNHY 380

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
               +  A A    +  A +++  + +  +      Y   I+   + G  + A   ++ M
Sbjct: 381 IFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQM 440

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             +GV P+ V  ++L+       K E A E+  E  NQGI   ++ ++++M         
Sbjct: 441 INEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRV 500

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            KA  L + M+ +  +P + + NALI   C   +  +  ++L  M S+GL PN  TY+ L
Sbjct: 501 MKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTL 560

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNS 430
           L    R   ++    +  +   +G+ P +V +  I+ G+  +RR+ +A+ L  ++++  S
Sbjct: 561 LHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMIT--S 618

Query: 431 GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSAD 490
           G+     +W+     +Y   I+   +     V + L   Q   + D++  ++    +   
Sbjct: 619 GK-----QWS-----IYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDII-TFNIMIG 667

Query: 491 ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVS 528
           AL       L DG  E    A +L    ++ G+VP V+
Sbjct: 668 AL-------LKDGRKE---DAMNLFATISANGLVPDVT 695



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/403 (20%), Positives = 180/403 (44%), Gaps = 21/403 (5%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AH +     +Y  L+    ++G+ +E   L + M RKG+   D   +    +   ++ A+
Sbjct: 302 AHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGI-KPDVSIYGIILHGYATKGAL 360

Query: 78  KEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            E   F  L+     +P    FN++    A       A  +   +++ GL  +   Y TL
Sbjct: 361 SEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATL 420

Query: 134 ITTCAKSGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEV 184
           I    K G+VD         + E V P+ VVF +L+         ++A ++  EM N  +
Sbjct: 421 IDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGI 480

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
           HP   + +    +M      G+V +A+ +  ++ +   +     Y   I      G  + 
Sbjct: 481 HP---NVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDE 537

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  + D M   G+ P+E   + L+      G+++ A+ + QE  + GI+  +++Y++++ 
Sbjct: 538 ASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILH 597

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                + + +A ELY +M +   + ++ T N ++  L   + + + +++   + S  L  
Sbjct: 598 GLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQV 657

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
           + IT++I++ A  +    E  + L +    +G++P++  ++ I
Sbjct: 658 DIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLI 700



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 94/457 (20%), Positives = 188/457 (41%), Gaps = 35/457 (7%)

Query: 40  RISECID-LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-------PT 91
           R+ E +  LL  M   G       Y+      C   +A +EA     ++ +       P 
Sbjct: 145 RVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRA-EEALELLHMMADGQVRSCPPN 203

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFE 148
           L ++N +++   +    + A+ +   + + G+  +   YT +I    K+  VD    +F+
Sbjct: 204 LVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQ 263

Query: 149 N-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 V+P+ V +  LI      G       +L EM+A  H ++PD  T G L+     
Sbjct: 264 QMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSA--HGLEPDCFTYGLLLDYLCK 321

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G+   AR+++  + +  IK    +Y I ++  +  G      S  D M   G+ P+   
Sbjct: 322 KGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYI 381

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + +         +  A +I  + + QG+S  +++Y++L+ A         A   +  M 
Sbjct: 382 FNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMI 441

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           +  + P +    +L+  LC  D+  K  E+  +M + G+ PN + ++ ++     +  V 
Sbjct: 442 NEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVM 501

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIENKWTS 441
               L+   +  G  P+++ +  +I G C   + ++A  L + +LS   G    E  + +
Sbjct: 502 KAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSV--GLKPNECTYNT 559

Query: 442 L------------ALMVYREAIVAGTIPTVEVVSKVL 466
           L            A  V++E +  G  P V   + +L
Sbjct: 560 LLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTIL 596



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 9/178 (5%)

Query: 243 EFACSVYDDMTK---KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
           E   S ++ M +     V PD    S L+      G++E  F         G  V  +  
Sbjct: 73  ELVVSCFNRMIRDCCSKVAPDVFTYSILVGCFCRMGRLEHGFAAFGLILKTGWRVNDVVV 132

Query: 300 SS--LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL--- 354
            +  L G C   +  +    L   M  +   P V + N L+   CD ++  + +E+L   
Sbjct: 133 VNRLLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMM 192

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           +D +     PN ++Y+ ++     +  V+    L     + G+ PN+V +  +I G+C
Sbjct: 193 ADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLC 250


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 183/410 (44%), Gaps = 56/410 (13%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---- 76
           VS  ++++N +I    R G++ +  D+ +D++  GL      Y++     CK   A    
Sbjct: 187 VSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMY 246

Query: 77  -----IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
                +KE     +   +PT  TF +L++    + ++  A +V   +++ G+ A    Y 
Sbjct: 247 HVDMLLKE---MVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYN 303

Query: 132 TLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           +LI+     GKV+   E VK                        ++ EM  E   + P+ 
Sbjct: 304 SLISGLCSEGKVE---EGVK------------------------LMEEM--EDLGLSPNE 334

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           IT G ++K     G +  A +    + + N++    +Y I I+   + G  E A +V + 
Sbjct: 335 ITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEA 394

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M KKG+ P+    + LI     +G   +A  +L E K +GI   +++Y+ L+GA      
Sbjct: 395 MAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGE 454

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            +KA++L + M  + L+P   T N +I   CD   +    E+ + M+      N +TY++
Sbjct: 455 VRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNV 514

Query: 372 LLVACERKDDVEVGLM-----LLSQAKEDGVIPNLVMFKCII-GMCSRRY 415
            +     K   ++G M     LL++  +  ++PN + ++ I  GM  + Y
Sbjct: 515 FI-----KYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGY 559



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 121/274 (44%), Gaps = 17/274 (6%)

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-C-- 201
           A+   V PD   FN +I+   + G + +A DV  ++ A    + P   T  +L+   C  
Sbjct: 182 ALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKA--WGLAPSVATYNSLIDGYCKK 239

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AG +     + K + +  I  T   + + IN   +  +   A  V+++M ++G+    
Sbjct: 240 GGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASV 299

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM------GACSNAKNWQKA 315
           V  ++LI      GKVE   ++++E ++ G+S   I++  ++      G  ++A +W   
Sbjct: 300 VTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDW--- 356

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
               + M    ++P V   N LI       ++   M V   M   G+ PN  TY+ L+  
Sbjct: 357 ---IDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITG 413

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
             R  D      LL + KE G+  ++V +  +IG
Sbjct: 414 FSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIG 447



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 76/158 (48%), Gaps = 4/158 (2%)

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P    ++AL+     A +V+ A +  + A  + +S  I ++++++         +KA ++
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV---LSDMKSLGLCPNTITYSILLVA 375
            + +K+  L P+V+T N+LI   C          V   L +M   G+ P  +T+ +L+  
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
             +  +    + +  + K+ G+  ++V +  +I G+CS
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCS 311


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 164/360 (45%), Gaps = 28/360 (7%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI    ++G+  E  +L ++M  +G++     Y +     CK Q  +  A
Sbjct: 287 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCK-QNRLDAA 345

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F L+     +P + TFN L++    +K  +   ++L  + EAGL A+   YTTLI  
Sbjct: 346 EHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHG 405

Query: 137 CAKSGKVDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE----- 183
             + G ++A        +   V P+ V  N L+     +G +  A ++   M        
Sbjct: 406 FCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDID 465

Query: 184 -VHP---VDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQ 238
             HP   V+PD  T   L+    N G+   A E+Y+ M H+  +  T    ++    C Q
Sbjct: 466 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQ 525

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
           +   + A  ++D M  K   P+ V  + LI+    AG+V+   E+  E   +GI    I+
Sbjct: 526 S-RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAIT 584

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           Y +L+       N   AL++++ M +  + P   T+  ++T L   ++L + + +L D++
Sbjct: 585 YITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQ 644



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 163/405 (40%), Gaps = 31/405 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI------KEAFRFFKL 86
           N L R+GR+ E + LL+ M   GL      Y      +CK    +      ++      +
Sbjct: 187 NGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHI 246

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            PN    P      M+   C+S + SE    +  +++   +  D   Y  LI    K GK
Sbjct: 247 KPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGK 306

Query: 143 V-------DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
                   D M    + P  + ++++I    +   +D A  +   M  +     PD IT 
Sbjct: 307 FFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATK--GCSPDIITF 364

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+     A +VD   ++   + +  +      YT  I+   Q GD   A  +  +M  
Sbjct: 365 NTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVS 424

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN-----------QGISVGIISYSSLM 303
            GV P+ V  + L+D     GK++ A E+ +  +             G+   + +Y+ L+
Sbjct: 425 SGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILI 484

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
               N   + +A ELYE M    + P   T N++I  LC   +L +  ++   M S    
Sbjct: 485 SGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFS 544

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           PN +T++ L+    +   V+ GL L  +    G++ N + +  +I
Sbjct: 545 PNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 589



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/357 (23%), Positives = 158/357 (44%), Gaps = 24/357 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           ++R GR+   I L   ME + +      +       C   K   A+    +  KL  +PT
Sbjct: 88  VVRMGRLDVVISLHRKMEMRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPT 147

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
           + TF+ L+  +C   + SE     L L  +   K +   +TTL+    + G+V       
Sbjct: 148 VVTFSTLLHGLCVEDRISEA----LDLFHQM-CKPNVVTFTTLMNGLCREGRVVEAVALL 202

Query: 144 DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC- 201
           D M E+ ++P+++ +  ++    + G    A ++L +M  EV  + P+ +      + C 
Sbjct: 203 DRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME-EVSHIKPNVVIWPLERRTCM 261

Query: 202 ----ANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
                ++G+   A+++ + M+ +  I      Y   IN   + G +  A  +YD+M  +G
Sbjct: 262 INGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 321

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           +IP  +  S++ID      +++AA  +      +G S  II++++L+     AK     +
Sbjct: 322 IIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGI 381

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +L   M    L     T   LI   C    L    ++L +M S G+CPN +T + LL
Sbjct: 382 KLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLL 438



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 141/330 (42%), Gaps = 14/330 (4%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAK---SGKVDAMFEN 149
           +F +LM    S      A      + + G       ++TL+   C +   S  +D   + 
Sbjct: 115 SFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQM 174

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
            KP+ V F  L+    + G V  A  +L  M  +   + P+ IT G ++      G    
Sbjct: 175 CKPNVVTFTTLMNGLCREGRVVEAVALLDRMLED--GLQPNQITYGTIVDGMCKMGDTVS 232

Query: 210 A----REVYKMIH-KYNIKGTP-EVYTIAINCCSQTGDWEFACSVYDDM-TKKGVIPDEV 262
           A    R++ ++ H K N+   P E  T  IN    +G W  A  +  +M  +K + PD V
Sbjct: 233 ALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVV 292

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +ALI+     GK   A E+  E   +GI    I+YSS++           A  ++  M
Sbjct: 293 TYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLM 352

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            +    P + T N LI   C   ++   +++L +M   GL  NTITY+ L+    +  D+
Sbjct: 353 ATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDL 412

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
                LL +    GV PN+V    ++ G+C
Sbjct: 413 NAAQDLLQEMVSSGVCPNVVTCNTLLDGLC 442



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 78/170 (45%), Gaps = 5/170 (2%)

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           E A  ++ DM +   +P  +    L+      G+++    + ++ + + +     S++ L
Sbjct: 60  EDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYSFTIL 119

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           M    +      AL  +  +  +   PTV T + L+  LC  D++ + +++   M     
Sbjct: 120 MKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQMCK--- 176

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            PN +T++ L+    R+  V   + LL +  EDG+ PN + +  I+ GMC
Sbjct: 177 -PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMC 225



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 70/318 (22%), Positives = 122/318 (38%), Gaps = 62/318 (19%)

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            ++ A D+  +M     P+ P  I    LM      G++D    +++ +    +      
Sbjct: 58  GLEDAIDLFGDM-VRSRPL-PSVIDFCKLMGVVVRMGRLDVVISLHRKMEMRRVPCNAYS 115

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           +TI + C        FA S +  +TK G  P                             
Sbjct: 116 FTILMKCFCSCSKLPFALSTFGKITKLGFHPT---------------------------- 147

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
                  ++++S+L+          +AL+L+  M     KP V T   L+  LC   ++ 
Sbjct: 148 -------VVTFSTLLHGLCVEDRISEALDLFHQM----CKPNVVTFTTLMNGLCREGRVV 196

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI-PNLVMF--- 404
           + + +L  M   GL PN ITY  ++    +  D    L LL + +E   I PN+V++   
Sbjct: 197 EAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLE 256

Query: 405 --KCII-GMCSR-RYEKARTLNEHVLSFNSGRPQI------------ENKWTSLALMVYR 448
              C+I G CS  R+ +A+ L + +L      P +            E K+   A  +Y 
Sbjct: 257 RRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFE-AEELYD 315

Query: 449 EAIVAGTIPTVEVVSKVL 466
           E +  G IP+    S ++
Sbjct: 316 EMLPRGIIPSTITYSSMI 333


>gi|58013026|gb|AAW62966.1| chloroplast embryo-defective 1270 [Arabidopsis thaliana]
          Length = 1429

 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 143/311 (45%), Gaps = 22/311 (7%)

Query: 90  PTLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-- 145
           P L +FN L++    S       A ++L +V+ +GL+ D   Y TL++ C++   +D   
Sbjct: 258 PDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAV 317

Query: 146 -MFENV-----KPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
            +FE++     +PD   +NA+I+    CG +   +R F     M  E+    PD +T  +
Sbjct: 318 KVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLF-----MELELKGFFPDAVTYNS 372

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-K 255
           L+ A A     ++ +EVY+ + K         Y   I+   + G  + A  +Y DM    
Sbjct: 373 LLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLS 432

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  PD +  + LID  G A +   A  ++ E  + GI   + +YS+L+   + A   ++A
Sbjct: 433 GRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEA 492

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            + +  M     KP     + ++  L  G++  K   +  DM S G  P+   Y ++++ 
Sbjct: 493 EDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILG 552

Query: 376 C---ERKDDVE 383
                R DD++
Sbjct: 553 LMKENRSDDIQ 563



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 145/331 (43%), Gaps = 19/331 (5%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA------ 145
           +  +N +M V + S     A +++  +++ G   D   + TLI    KSG +        
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVEL 284

Query: 146 --MFEN--VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             M  N  ++PD + +N L++AC +   +D A  V  +M  E H   PD  T  A++   
Sbjct: 285 LDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDM--EAHRCQPDLWTYNAMISVY 342

Query: 202 ANAGQVDRAREVYKMIHKYNIKGT-PE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              G    A E  ++  +  +KG  P+   Y   +   ++  + E    VY  M K G  
Sbjct: 343 GRCGL---AAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFG 399

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKN-QGISVGIISYSSLMGACSNAKNWQKALE 317
            DE+  + +I   G  G+++ A ++ ++ K   G +   I+Y+ L+ +   A    +A  
Sbjct: 400 KDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAA 459

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L   M  + +KPT+ T +ALI       +  +  +  S M   G  P+ + YS++L    
Sbjct: 460 LMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLL 519

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           R ++      L      DG  P+  +++ +I
Sbjct: 520 RGNETRKAWGLYRDMISDGHTPSYTLYELMI 550



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 161/360 (44%), Gaps = 30/360 (8%)

Query: 146 MFENVKP---DRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +F   +P   DRV V+NA++    +SG   +A +++  M        PD I+   L+ A 
Sbjct: 213 IFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQ--RGCVPDLISFNTLINAR 270

Query: 202 ANAGQV--DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
             +G +  + A E+  M+    ++     Y   ++ CS+  + + A  V++DM      P
Sbjct: 271 LKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQP 330

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D    +A+I   G  G    A  +  E + +G     ++Y+SL+ A +  +N +K  E+Y
Sbjct: 331 DLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVY 390

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSILLVACER 378
           + M+ +       T N +I       QL   +++  DMK L G  P+ ITY++L+ +  +
Sbjct: 391 QQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGK 450

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFN----SG-RP 433
            +       L+S+  + G+ P L  +  +I  C   Y KA    E   +F+    SG +P
Sbjct: 451 ANRTVEAAALMSEMLDVGIKPTLQTYSALI--CG--YAKAGKREEAEDTFSCMLRSGTKP 506

Query: 434 Q-----------IENKWTSLALMVYREAIVAGTIPTVEVVS-KVLGCLQLPYNADIRERL 481
                       +    T  A  +YR+ I  G  P+  +    +LG ++   + DI++ +
Sbjct: 507 DNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTI 566



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 128/274 (46%), Gaps = 7/274 (2%)

Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +DA    + P    F  ++ + GQ  +  RA +V   +N   H   P+   + A++    
Sbjct: 147 LDARLVQMTPTDYCF--VVKSVGQE-SWQRALEVFEWLNLR-HWHSPNARMVAAILGVLG 202

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              Q   A E++       +    +VY   +   S++G +  A  + D M ++G +PD +
Sbjct: 203 RWNQESLAVEIFTRAEP-TVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLI 261

Query: 263 FLSALIDFAGHAGKVEA--AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
             + LI+    +G +    A E+L   +N G+    I+Y++L+ ACS   N   A++++E
Sbjct: 262 SFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFE 321

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M++ + +P + T NA+I+         +   +  +++  G  P+ +TY+ LL A  R+ 
Sbjct: 322 DMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARER 381

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           + E    +  Q ++ G   + + +  II M  ++
Sbjct: 382 NTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQ 415



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 140/346 (40%), Gaps = 13/346 (3%)

Query: 93   STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP 152
            + +  L+  C +++    A QV   ++ +G +A   +  +++    K G  +   + V  
Sbjct: 682  TMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQ 741

Query: 153  DRV---------VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                        ++  +I A G+     +A  V+   N       PD  T  +LM A A 
Sbjct: 742  AETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVG--NLRQSGRTPDLKTWNSLMSAYAQ 799

Query: 204  AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             G  +RAR ++  + +     T E   I ++     G  E    V +++   G    +  
Sbjct: 800  CGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSS 859

Query: 264  LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +  ++D    AG +    +I    K  G    I  Y  ++      K  + A  +   M+
Sbjct: 860  ILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEME 919

Query: 324  SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
                K  ++  N+++      +   KT++V   +K  GL P+  TY+ L++   R    E
Sbjct: 920  EANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPE 979

Query: 384  VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLS 427
             G +L+ Q +  G+ P L  +K +I    ++   E+A  L E +LS
Sbjct: 980  EGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLS 1025



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 148/338 (43%), Gaps = 10/338 (2%)

Query: 88   PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVD 144
            P+PT+ + N+L+         E  + V+  +Q+ G K        ++   A++G   +V 
Sbjct: 818  PSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVK 877

Query: 145  AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             ++ ++K     P   ++  +I    +   V  A  +++EM      V+       +++K
Sbjct: 878  KIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVE--LAIWNSMLK 935

Query: 200  ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                     +  +VY+ I +  ++     Y   I    +    E    +   M   G+ P
Sbjct: 936  MYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDP 995

Query: 260  DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
                  +LI   G    +E A ++ +E  ++G+ +    Y ++M    ++ +  KA +L 
Sbjct: 996  KLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLL 1055

Query: 320  EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
            + MK+  ++PT++TM+ L+ +        +  +VLS++K   +   T+ YS ++ A  R 
Sbjct: 1056 QMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRS 1115

Query: 380  DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK 417
             D   G+  L + K++G+ P+  ++ C +   S   EK
Sbjct: 1116 KDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEK 1153



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 76/375 (20%), Positives = 155/375 (41%), Gaps = 63/375 (16%)

Query: 39   GRISECIDLLEDMERKG--------LLDMDKVYHA-RFFNVCKSQKAIKEAFRFFKLVPN 89
            GR+ E   ++E+++  G        LL +D    A   F V K   ++K A         
Sbjct: 836  GRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYL------ 889

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TTCAKSGKVDAM 146
            PT+  + M++ +    K    A  ++  ++EA  K +  ++ +++   T      K   +
Sbjct: 890  PTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQV 949

Query: 147  FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            ++ +K     PD   +N LI    +    +  + ++ +M      +DP   T  +L+ A 
Sbjct: 950  YQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRN--LGLDPKLDTYKSLISAF 1007

Query: 202  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                 +++A +++                                   +++  KG+  D 
Sbjct: 1008 GKQKCLEQAEQLF-----------------------------------EELLSKGLKLDR 1032

Query: 262  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
             F   ++  +  +G    A ++LQ  KN GI   + +   LM + S++ N Q+A ++  +
Sbjct: 1033 SFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSN 1092

Query: 322  MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE-RKD 380
            +K  +++ T    +++I A          +E L +MK  GL P+   ++  + A    K+
Sbjct: 1093 LKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKE 1152

Query: 381  DVEVGLMLLSQAKED 395
             +EV  MLL +A ED
Sbjct: 1153 KIEV--MLLLKALED 1165



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 114/265 (43%), Gaps = 25/265 (9%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
            P  +T+N L+ +    +  E  + +++ ++  GL      Y +LI+   K     + + +
Sbjct: 960  PDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQL 1019

Query: 147  FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKA 200
            FE +     K DR  ++ ++     SG+  +A  +L  M NA    ++P   T+  LM +
Sbjct: 1020 FEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNA---GIEPTLATMHLLMVS 1076

Query: 201  CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             +++G    A +V   +    ++ T   Y+  I+   ++ D+        +M K+G+ PD
Sbjct: 1077 YSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPD 1136

Query: 261  EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA----CSNAKNWQKAL 316
                +  +  A  + +      +L+  ++ G  + I     L G      S    W    
Sbjct: 1137 HRIWTCFVRAASFSKEKIEVMLLLKALEDIGFDLPI---RLLAGRPELLVSEVDGW---- 1189

Query: 317  ELYEHMKSIKLKPTVSTMNALITAL 341
              +E +KSI+    ++ +NAL+  L
Sbjct: 1190 --FEKLKSIEDNAALNFVNALLNLL 1212



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 6/225 (2%)

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           +YT  I    +   W+ A SV  ++ + G  PD    ++L+      G  E A  I    
Sbjct: 754 MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTM 813

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
              G S  + S + L+ A       ++   + E ++ +  K + S++  ++ A      +
Sbjct: 814 MRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNI 873

Query: 348 PKTMEVLSDMKSLGLCPNTITYSI---LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            +  ++ S MK+ G  P    Y +   LL   +R  D E+   ++S+ +E      L ++
Sbjct: 874 FEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEI---MVSEMEEANFKVELAIW 930

Query: 405 KCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 449
             ++ M +   +  +T+  +     +G    E  + +L +M  R+
Sbjct: 931 NSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRD 975


>gi|334185431|ref|NP_188439.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|322510063|sp|Q5G1S8.2|PP241_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g18110, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 1270; Flags: Precursor
 gi|9294066|dbj|BAB02023.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642528|gb|AEE76049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1440

 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 143/311 (45%), Gaps = 22/311 (7%)

Query: 90  PTLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-- 145
           P L +FN L++    S       A ++L +V+ +GL+ D   Y TL++ C++   +D   
Sbjct: 258 PDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAV 317

Query: 146 -MFENV-----KPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
            +FE++     +PD   +NA+I+    CG +   +R F     M  E+    PD +T  +
Sbjct: 318 KVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLF-----MELELKGFFPDAVTYNS 372

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-K 255
           L+ A A     ++ +EVY+ + K         Y   I+   + G  + A  +Y DM    
Sbjct: 373 LLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLS 432

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  PD +  + LID  G A +   A  ++ E  + GI   + +YS+L+   + A   ++A
Sbjct: 433 GRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEA 492

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            + +  M     KP     + ++  L  G++  K   +  DM S G  P+   Y ++++ 
Sbjct: 493 EDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILG 552

Query: 376 C---ERKDDVE 383
                R DD++
Sbjct: 553 LMKENRSDDIQ 563



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 145/331 (43%), Gaps = 19/331 (5%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA------ 145
           +  +N +M V + S     A +++  +++ G   D   + TLI    KSG +        
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVEL 284

Query: 146 --MFEN--VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             M  N  ++PD + +N L++AC +   +D A  V  +M  E H   PD  T  A++   
Sbjct: 285 LDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDM--EAHRCQPDLWTYNAMISVY 342

Query: 202 ANAGQVDRAREVYKMIHKYNIKGT-PE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              G    A E  ++  +  +KG  P+   Y   +   ++  + E    VY  M K G  
Sbjct: 343 GRCGL---AAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFG 399

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKN-QGISVGIISYSSLMGACSNAKNWQKALE 317
            DE+  + +I   G  G+++ A ++ ++ K   G +   I+Y+ L+ +   A    +A  
Sbjct: 400 KDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAA 459

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L   M  + +KPT+ T +ALI       +  +  +  S M   G  P+ + YS++L    
Sbjct: 460 LMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLL 519

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           R ++      L      DG  P+  +++ +I
Sbjct: 520 RGNETRKAWGLYRDMISDGHTPSYTLYELMI 550



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 161/360 (44%), Gaps = 30/360 (8%)

Query: 146 MFENVKP---DRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +F   +P   DRV V+NA++    +SG   +A +++  M        PD I+   L+ A 
Sbjct: 213 IFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQ--RGCVPDLISFNTLINAR 270

Query: 202 ANAGQV--DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
             +G +  + A E+  M+    ++     Y   ++ CS+  + + A  V++DM      P
Sbjct: 271 LKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQP 330

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D    +A+I   G  G    A  +  E + +G     ++Y+SL+ A +  +N +K  E+Y
Sbjct: 331 DLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVY 390

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSILLVACER 378
           + M+ +       T N +I       QL   +++  DMK L G  P+ ITY++L+ +  +
Sbjct: 391 QQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGK 450

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFN----SG-RP 433
            +       L+S+  + G+ P L  +  +I  C   Y KA    E   +F+    SG +P
Sbjct: 451 ANRTVEAAALMSEMLDVGIKPTLQTYSALI--CG--YAKAGKREEAEDTFSCMLRSGTKP 506

Query: 434 Q-----------IENKWTSLALMVYREAIVAGTIPTVEVVS-KVLGCLQLPYNADIRERL 481
                       +    T  A  +YR+ I  G  P+  +    +LG ++   + DI++ +
Sbjct: 507 DNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTI 566



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 63/274 (22%), Positives = 128/274 (46%), Gaps = 7/274 (2%)

Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +DA    + P    F  ++ + GQ  +  RA +V   +N   H   P+   + A++    
Sbjct: 147 LDARLVQMTPTDYCF--VVKSVGQE-SWQRALEVFEWLNLR-HWHSPNARMVAAILGVLG 202

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              Q   A E++       +    +VY   +   S++G +  A  + D M ++G +PD +
Sbjct: 203 RWNQESLAVEIFTRAEP-TVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLI 261

Query: 263 FLSALIDFAGHAGKVEA--AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
             + LI+    +G +    A E+L   +N G+    I+Y++L+ ACS   N   A++++E
Sbjct: 262 SFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFE 321

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M++ + +P + T NA+I+         +   +  +++  G  P+ +TY+ LL A  R+ 
Sbjct: 322 DMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARER 381

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           + E    +  Q ++ G   + + +  II M  ++
Sbjct: 382 NTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQ 415



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 140/346 (40%), Gaps = 13/346 (3%)

Query: 93   STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP 152
            + +  L+  C +++    A QV   ++ +G +A   +  +++    K G  +   + V  
Sbjct: 682  TMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQ 741

Query: 153  DRV---------VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                        ++  +I A G+     +A  V+   N       PD  T  +LM A A 
Sbjct: 742  AETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVG--NLRQSGRTPDLKTWNSLMSAYAQ 799

Query: 204  AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             G  +RAR ++  + +     T E   I ++     G  E    V +++   G    +  
Sbjct: 800  CGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSS 859

Query: 264  LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            +  ++D    AG +    +I    K  G    I  Y  ++      K  + A  +   M+
Sbjct: 860  ILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEME 919

Query: 324  SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
                K  ++  N+++      +   KT++V   +K  GL P+  TY+ L++   R    E
Sbjct: 920  EANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPE 979

Query: 384  VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLS 427
             G +L+ Q +  G+ P L  +K +I    ++   E+A  L E +LS
Sbjct: 980  EGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLS 1025



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 69/338 (20%), Positives = 148/338 (43%), Gaps = 10/338 (2%)

Query: 88   PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVD 144
            P+PT+ + N+L+         E  + V+  +Q+ G K        ++   A++G   +V 
Sbjct: 818  PSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVK 877

Query: 145  AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             ++ ++K     P   ++  +I    +   V  A  +++EM      V+       +++K
Sbjct: 878  KIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVE--LAIWNSMLK 935

Query: 200  ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                     +  +VY+ I +  ++     Y   I    +    E    +   M   G+ P
Sbjct: 936  MYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDP 995

Query: 260  DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
                  +LI   G    +E A ++ +E  ++G+ +    Y ++M    ++ +  KA +L 
Sbjct: 996  KLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLL 1055

Query: 320  EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
            + MK+  ++PT++TM+ L+ +        +  +VLS++K   +   T+ YS ++ A  R 
Sbjct: 1056 QMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRS 1115

Query: 380  DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK 417
             D   G+  L + K++G+ P+  ++ C +   S   EK
Sbjct: 1116 KDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEK 1153



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 76/375 (20%), Positives = 155/375 (41%), Gaps = 63/375 (16%)

Query: 39   GRISECIDLLEDMERKG--------LLDMDKVYHA-RFFNVCKSQKAIKEAFRFFKLVPN 89
            GR+ E   ++E+++  G        LL +D    A   F V K   ++K A         
Sbjct: 836  GRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYL------ 889

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TTCAKSGKVDAM 146
            PT+  + M++ +    K    A  ++  ++EA  K +  ++ +++   T      K   +
Sbjct: 890  PTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQV 949

Query: 147  FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            ++ +K     PD   +N LI    +    +  + ++ +M      +DP   T  +L+ A 
Sbjct: 950  YQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRN--LGLDPKLDTYKSLISAF 1007

Query: 202  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                 +++A +++                                   +++  KG+  D 
Sbjct: 1008 GKQKCLEQAEQLF-----------------------------------EELLSKGLKLDR 1032

Query: 262  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
             F   ++  +  +G    A ++LQ  KN GI   + +   LM + S++ N Q+A ++  +
Sbjct: 1033 SFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSN 1092

Query: 322  MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE-RKD 380
            +K  +++ T    +++I A          +E L +MK  GL P+   ++  + A    K+
Sbjct: 1093 LKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKE 1152

Query: 381  DVEVGLMLLSQAKED 395
             +EV  MLL +A ED
Sbjct: 1153 KIEV--MLLLKALED 1165



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 114/265 (43%), Gaps = 25/265 (9%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
            P  +T+N L+ +    +  E  + +++ ++  GL      Y +LI+   K     + + +
Sbjct: 960  PDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQL 1019

Query: 147  FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKA 200
            FE +     K DR  ++ ++     SG+  +A  +L  M NA    ++P   T+  LM +
Sbjct: 1020 FEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNA---GIEPTLATMHLLMVS 1076

Query: 201  CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             +++G    A +V   +    ++ T   Y+  I+   ++ D+        +M K+G+ PD
Sbjct: 1077 YSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPD 1136

Query: 261  EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA----CSNAKNWQKAL 316
                +  +  A  + +      +L+  ++ G  + I     L G      S    W    
Sbjct: 1137 HRIWTCFVRAASFSKEKIEVMLLLKALEDIGFDLPI---RLLAGRPELLVSEVDGW---- 1189

Query: 317  ELYEHMKSIKLKPTVSTMNALITAL 341
              +E +KSI+    ++ +NAL+  L
Sbjct: 1190 --FEKLKSIEDNAALNFVNALLNLL 1212



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 6/225 (2%)

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           +YT  I    +   W+ A SV  ++ + G  PD    ++L+      G  E A  I    
Sbjct: 754 MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTM 813

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
              G S  + S + L+ A       ++   + E ++ +  K + S++  ++ A      +
Sbjct: 814 MRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNI 873

Query: 348 PKTMEVLSDMKSLGLCPNTITYSI---LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            +  ++ S MK+ G  P    Y +   LL   +R  D E+   ++S+ +E      L ++
Sbjct: 874 FEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEI---MVSEMEEANFKVELAIW 930

Query: 405 KCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 449
             ++ M +   +  +T+  +     +G    E  + +L +M  R+
Sbjct: 931 NSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRD 975


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 143/325 (44%), Gaps = 21/325 (6%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMSVCASSKDSEGAFQVLR 116
           F+ C+         R+FKLV              +L  FN+LM       D   A  V  
Sbjct: 89  FDTCRKMLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 148

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVD-------AMFEN-VKPDRVVFNALITACGQSG 168
            + + GL+     Y TL+    + G +D       AM  N V+PD   ++ LI    +  
Sbjct: 149 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKES 208

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +D A ++  EM   V  + P+ +T   L+      G+VD A E+YK +   ++      
Sbjct: 209 KMDDANELFDEM--LVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLIT 266

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   I    + GD + A  + D+M+ KG+ PD+   + LID     G ++ AF+  +   
Sbjct: 267 YNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMI 326

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            + I +  ++Y++L+           A ++   M S+ LKP + T   +I   C    + 
Sbjct: 327 QENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVW 386

Query: 349 KTMEVLSDMKSLGLCPNTITYSILL 373
           K  ++L +M+  G  P+ +TY++L+
Sbjct: 387 KGSKLLKEMQRNGHAPSVVTYNVLM 411



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/301 (22%), Positives = 138/301 (45%), Gaps = 14/301 (4%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKV---DAMFENV-----KPDRVVFNALITACGQSGA 169
           + E G  A    +  L+    K G +    ++F+ +     +P  V +N L+    + G 
Sbjct: 115 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 174

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D  F + + M A  + V PD  T   L+       ++D A E++  +    +      +
Sbjct: 175 LDEGFRLKSAMLA--NGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTF 232

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           T  I+   + G  + A  +Y  M  + ++PD +  + LI      G ++ A +++ E   
Sbjct: 233 TTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSM 292

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHM--KSIKLKPTVSTMNALITALCDGDQL 347
           +G+     +Y++L+  C    +   A +  + M  ++I+L     T  ALI+ LC   Q 
Sbjct: 293 KGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYT--ALISGLCQEGQS 350

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
               ++L +M S+GL P+  TY++++    +K DV  G  LL + + +G  P++V +  +
Sbjct: 351 VDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVL 410

Query: 408 I 408
           +
Sbjct: 411 M 411



 Score = 77.4 bits (189), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 103/217 (47%), Gaps = 3/217 (1%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           LM      G +  A+ V+  I K+ ++ +   Y   +N   + GD +    +   M   G
Sbjct: 130 LMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANG 189

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKA 315
           V PD    S LI+      K++ A E+  E   +G+    +++++L+ G C N +    A
Sbjct: 190 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRV-DLA 248

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           +E+Y+ M S  L P + T N LI  LC    L +  +++ +M   GL P+  TY+ L+  
Sbjct: 249 MEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 308

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           C ++ D++       +  ++ +  + V +  +I G+C
Sbjct: 309 CCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLC 345



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 108/265 (40%), Gaps = 6/265 (2%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDV--LAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           + D  VF+ LITA  +SG +  A +   L   +    P D     +  LMK         
Sbjct: 51  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKL----RYFK 106

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
                Y+ I +     +   + I ++   + GD   A SV+D +TK G+ P  V  + L+
Sbjct: 107 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 166

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +     G ++  F +       G+   + +YS L+           A EL++ M    L 
Sbjct: 167 NGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLI 226

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P   T   LI   C   ++   ME+   M S  L P+ ITY+ L+    +  D++    L
Sbjct: 227 PNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDL 286

Query: 389 LSQAKEDGVIPNLVMFKCIIGMCSR 413
           + +    G+ P+   +  +I  C +
Sbjct: 287 IDEMSMKGLKPDKFTYTTLIDGCCK 311



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 101/257 (39%), Gaps = 23/257 (8%)

Query: 31  SYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           SYN L    IR G + E   L   M   G+      Y      +CK  K + +A   F  
Sbjct: 161 SYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESK-MDDANELFDE 219

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                L+PN    TF  L+     +   + A ++ + +    L  D   Y TLI    K+
Sbjct: 220 MLVKGLIPNGV--TFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKN 277

Query: 141 GK-------VDAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G        +D M  + +KPD+  +  LI  C + G +D AF     M  E   +  D +
Sbjct: 278 GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQE--NIRLDDV 335

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              AL+      GQ   A ++ + +    +K     YT+ IN   + GD      +  +M
Sbjct: 336 AYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEM 395

Query: 253 TKKGVIPDEVFLSALID 269
            + G  P  V  + L++
Sbjct: 396 QRNGHAPSVVTYNVLMN 412


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 151/330 (45%), Gaps = 17/330 (5%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP---- 152
           +++ +C     SE      +L    GL A+      L+    + G ++ +FE +K     
Sbjct: 471 LVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEK 530

Query: 153 ----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
               DR+ +N LI  C + G ++ AF +  EM  +     PD  T   LMK  A+ G++D
Sbjct: 531 GLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQ--EFQPDTYTYNFLMKGLADMGKID 588

Query: 209 RAREVYKMIHKYNIKG-TPEVYTIAI--NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
              +V++++H+    G  P VYT A+      +    E A   + ++  + V    V  +
Sbjct: 589 ---DVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYN 645

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LI      G V  AF++    K++GI     +YSSL+          +A E++E M++ 
Sbjct: 646 ILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNE 705

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            L P V    ALI   C   Q+     +L +M S G+ PN ITY+I++    +  +++  
Sbjct: 706 GLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEA 765

Query: 386 LMLLSQAKEDGVIPNLVMFKCI-IGMCSRR 414
             LL++   +G+ P+ V +  +  G C  R
Sbjct: 766 RELLNEMIRNGIAPDTVTYNALQKGYCKER 795



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 178/405 (43%), Gaps = 16/405 (3%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           A DV     + N   + GR+ + +DL   ME  G+      Y+     + KS +  +EA 
Sbjct: 252 APDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGR-FEEAL 310

Query: 82  RF----FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           RF     +   NP++ T+ +L+S     +  E A +VL  +   G   +  ++  LI   
Sbjct: 311 RFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGY 370

Query: 138 AKSGKV-------DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            + G +       D M  + +KP+ V FN L+    +S  +++A  VL  + +    V+ 
Sbjct: 371 CRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNM 430

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT-IAINCCSQTGDWEFACSV 248
           D +    + +    +G V   + V K++   NI+ +  + T + +  C   G  E     
Sbjct: 431 D-VCSYVIHRLMERSGFVSALKIVTKLLSG-NIRVSDSLLTPLVVGLCKCEGHSEAIELW 488

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +     KG+  + V  +AL+      G +E  FE+L++   +G+ +  ISY++L+  C  
Sbjct: 489 FKLAAVKGLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCK 548

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
               ++A +L E M   + +P   T N L+  L D  ++     +L + K  G  PN  T
Sbjct: 549 WGKIEEAFKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYT 608

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           Y++LL    + D +E  +        + V  + V++  +I    R
Sbjct: 609 YALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCR 653



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 134/286 (46%), Gaps = 18/286 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVP----N 89
           L  +G + E  ++L+ M  KGLL +D++ Y+   F  CK  K I+EAF+  + +      
Sbjct: 511 LCERGNMEEVFEVLKQMLEKGLL-LDRISYNTLIFGCCKWGK-IEEAFKLKEEMVQQEFQ 568

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM-- 146
           P   T+N LM   A     +   ++L   +E G   +   Y  L+    K+ ++ DA+  
Sbjct: 569 PDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKF 628

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                +E V+   VV+N LI A  + G V  AF +   M +    + P   T  +L+   
Sbjct: 629 FKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSR--GILPTCATYSSLIHGM 686

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+VD A+E+++ +    +      YT  I    + G  +   S+  +M+  G+ P++
Sbjct: 687 CCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSNGIRPNK 746

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GAC 306
           +  + +ID     G ++ A E+L E    GI+   ++Y++L  G C
Sbjct: 747 ITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGYC 792



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 183/429 (42%), Gaps = 29/429 (6%)

Query: 12  PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           P  + K     HD   ++ S    + QG          D +R G LD+        F   
Sbjct: 150 PTWSSKTTTSFHDRLREIASSMLELNQG---------SDEQRLGELDLLLHILCSQFKCL 200

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
            S+ A      F K    P L T N+L+S    + +   +++V  L  + G+  D   +T
Sbjct: 201 GSRCAFDIFVMFSKRGVFPCLKTCNLLLSSLVKANELHKSYEVFDLACQ-GVAPDVFTFT 259

Query: 132 TLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           T I    K G+V    +         V P+ V +N +I    +SG  + A      M   
Sbjct: 260 TAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRS 319

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGD 241
              V+P  +T G L+         + A EV  ++  Y++   P   V+   I+   + GD
Sbjct: 320 --KVNPSVVTYGVLISGLMKLEMFEEANEV--LVEMYSMGFAPNEVVFNALIDGYCRKGD 375

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
              A  V D+M  KG+ P+ V  + L+     + ++E A ++L    + G+SV +   S 
Sbjct: 376 MGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSY 435

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL- 360
           ++        +  AL++   + S  ++ + S +  L+  LC  +   + +E+   + ++ 
Sbjct: 436 VIHRLMERSGFVSALKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVK 495

Query: 361 GLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEK 417
           GL  NT+T + LL   CER +  EV   +L Q  E G++ + + +  +I  C +  + E+
Sbjct: 496 GLAANTVTSNALLHGLCERGNMEEV-FEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEE 554

Query: 418 ARTLNEHVL 426
           A  L E ++
Sbjct: 555 AFKLKEEMV 563



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 109/218 (50%), Gaps = 7/218 (3%)

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           D+  +GV PD    +  I+     G+V  A ++  + +  G+   +++Y++++     + 
Sbjct: 245 DLACQGVAPDVFTFTTAINAFCKGGRVGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSG 304

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            +++AL   + M   K+ P+V T   LI+ L   +   +  EVL +M S+G  PN + ++
Sbjct: 305 RFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFN 364

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSF 428
            L+    RK D+   L +  +    G+ PN V F  ++ G C S + E+A  +  ++LS 
Sbjct: 365 ALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILS- 423

Query: 429 NSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 466
            SG   +       + +++R    +G +  +++V+K+L
Sbjct: 424 -SG---LSVNMDVCSYVIHRLMERSGFVSALKIVTKLL 457


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 188/435 (43%), Gaps = 32/435 (7%)

Query: 16  GKHANYAHDVSEQLH------SYNR----LIRQGRISECIDLLEDM---ERKGLLDMDKV 62
           G+  N+ H ++  LH      S+N     +I++G  S        +     KG       
Sbjct: 141 GEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLT 200

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRL 117
           Y+     +CK  + I  A   F+ +P    NP + T++ LM+ +C   +  E  F +L  
Sbjct: 201 YNLIIKALCKLGQ-IDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVF-LLDE 258

Query: 118 VQEAGLKADCKLYTTLITTCAKSGK-------VDAMF-ENVKPDRVVFNALITACGQSGA 169
           +Q  G   +   +  LI   +K+G        VD MF +   P+ V +N LI      G 
Sbjct: 259 MQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGK 318

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D+A  +L +M +      P+ +T G ++       + +    +   + +   K    +Y
Sbjct: 319 LDKALSLLEKMVSS--KCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIY 376

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           +  I+   + G  E A  ++ +M +KG  P+ V   A ID      K + A +ILQE  +
Sbjct: 377 SSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLS 436

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           +G      +YSSLM       + QKA+ +++ M S  ++  V   + L+  LC+  +L +
Sbjct: 437 KGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLRE 496

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS--QAKEDGVIPNLVMFKCI 407
            + V + M   GL P+ + YS ++        V+ GL L    Q +E    P++V +  +
Sbjct: 497 ALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNIL 556

Query: 408 IGMCSRRYEKARTLN 422
                R+    R ++
Sbjct: 557 FNALCRQDNLTRAID 571


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 104/435 (23%), Positives = 188/435 (43%), Gaps = 32/435 (7%)

Query: 16  GKHANYAHDVSEQLH------SYNR----LIRQGRISECIDLLEDM---ERKGLLDMDKV 62
           G+  N+ H ++  LH      S+N     +I++G  S        +     KG       
Sbjct: 117 GEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLT 176

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRL 117
           Y+     +CK  + I  A   F+ +P    NP + T++ LM+ +C   +  E  F +L  
Sbjct: 177 YNLIIKALCKLGQ-IDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVF-LLDE 234

Query: 118 VQEAGLKADCKLYTTLITTCAKSGK-------VDAMF-ENVKPDRVVFNALITACGQSGA 169
           +Q  G   +   +  LI   +K+G        VD MF +   P+ V +N LI      G 
Sbjct: 235 MQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGK 294

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D+A  +L +M +      P+ +T G ++       + +    +   + +   K    +Y
Sbjct: 295 LDKALSLLEKMVSS--KCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIY 352

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           +  I+   + G  E A  ++ +M +KG  P+ V   A ID      K + A +ILQE  +
Sbjct: 353 SSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLS 412

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           +G      +YSSLM       + QKA+ +++ M S  ++  V   + L+  LC+  +L +
Sbjct: 413 KGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLRE 472

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS--QAKEDGVIPNLVMFKCI 407
            + V + M   GL P+ + YS ++        V+ GL L    Q +E    P++V +  +
Sbjct: 473 ALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNIL 532

Query: 408 IGMCSRRYEKARTLN 422
                R+    R ++
Sbjct: 533 FNALCRQDNLTRAID 547


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 177/408 (43%), Gaps = 18/408 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L ++G++S    +L ++ + G  D+D   +        S    ++A   FK +      P
Sbjct: 192 LGKEGKVSAASSILNNLRKDGF-DLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKP 250

Query: 91  TLSTFNMLMSVCASSKDSEGAFQ-VLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
           TL T+N++++V             ++  ++ +G+  D   Y TLI+ C +     +   +
Sbjct: 251 TLITYNVILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQV 310

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE +K     PD+V FN L+   G+S     A +VL EM  E     P  +T  +L+ A 
Sbjct: 311 FEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEM--EFSGFSPSIVTYNSLISAY 368

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A  G +  A E+   + +  IK     YT  ++   + G  E A  ++ +M   G  P+ 
Sbjct: 369 ARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNI 428

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              +ALI   G+ G+     ++ +E +    +  I+++++L+          +   +++ 
Sbjct: 429 CTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKE 488

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK     P   T N LI+A        + M V   M   G+ P+  +Y+ +L A  R   
Sbjct: 489 MKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGL 548

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLS 427
            E    + ++ K+    PN + +  ++     S+  E+  TL E + S
Sbjct: 549 WEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYS 596



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 182/428 (42%), Gaps = 22/428 (5%)

Query: 18  HANYAHDVSEQLHSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H   +  V+   ++YN LI   R+G +  E   + E+M+  G    DKV      +V   
Sbjct: 277 HGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGF-SPDKVTFNTLLDVYGK 335

Query: 74  QKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
            +  KEA    K +     +P++ T+N L+S  A       A ++   + E G+K D   
Sbjct: 336 SRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFT 395

Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           YTTL++   K+G  +              KP+   FNALI   G  G       V  E+ 
Sbjct: 396 YTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIKMHGNRGRFAEMMKVFEEI- 454

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
            E+    PD +T   L+      G       V+K + +       + +   I+  S+ G 
Sbjct: 455 -EICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGS 513

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
           ++ A +VY  M + GV PD    +A++      G  E + ++  E K+       ++Y S
Sbjct: 514 FQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNELTYCS 573

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+ A +N+K  ++   L E + S   +P    +  L+      D L +T     ++K  G
Sbjct: 574 LLHAYANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHAFEELKKKG 633

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKAR 419
             P+  T + ++    R+  V     +L+   E G  P+L  +  ++ M SR   +E++ 
Sbjct: 634 -SPDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSE 692

Query: 420 TLNEHVLS 427
            + + +L+
Sbjct: 693 EVLKEILA 700



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 157/339 (46%), Gaps = 20/339 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P + T+N L++V   +        V + ++ AG   +   + TLI+  ++ G        
Sbjct: 461 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAV 520

Query: 146 ---MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
              M E  V PD   +NA++ A  + G  +++  V AEM        P+ +T  +L+ A 
Sbjct: 521 YKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKD--GRCKPNELTYCSLLHAY 578

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           AN+ +++R   + + I+    +  P   +   +  + C    + E A   ++++ KKG  
Sbjct: 579 ANSKEIERMHTLAEEIYSGLTEPVPVLLKTLVLVNSKCDLLMETEHA---FEELKKKGS- 634

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD   L+A+I   G    V  A EIL      G S  + +Y+SLM   S ++N++++ E+
Sbjct: 635 PDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSLATYNSLMYMHSRSENFERSEEV 694

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            + + +  LKP + + N +I A C   ++     + S MK+ GL P+ ITY+  + +   
Sbjct: 695 LKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASYAA 754

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRR 414
               E  + ++    + G   N   +  I+ G C  SRR
Sbjct: 755 DSLFEDAIGVVRYMIKHGCKRNQNTYNSIVDGYCKHSRR 793



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 131/289 (45%), Gaps = 25/289 (8%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFENVKP 152
           +M MSV +  ++ E    VL          +C +   +IT   K GKV A   +  N++ 
Sbjct: 161 DMAMSVFSWVREREDFESVL----------NCSVVAVIITMLGKEGKVSAASSILNNLRK 210

Query: 153 DRV-----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           D        + +LITA   +G    A  V  +M  E     P  IT   ++      G  
Sbjct: 211 DGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEE--GCKPTLITYNVILNVYGKMGMP 268

Query: 208 DRAREVYKMIHKYNIKGT-PEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
               ++  ++H     G  P+ YT    I+CC +   +E A  V+++M   G  PD+V  
Sbjct: 269 --WSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTF 326

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + L+D  G + + + A E+L+E +  G S  I++Y+SL+ A +     ++A+EL + M  
Sbjct: 327 NTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVE 386

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             +KP V T   L++           M +  +M++ G  PN  T++ L+
Sbjct: 387 KGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALI 435



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 134/305 (43%), Gaps = 8/305 (2%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAV 170
           +  VL +++  G    C +  ++ +   +       FE+V    VV   +IT  G+ G V
Sbjct: 144 SMDVLGIIKGLGFYKKCDMAMSVFSWVRERED----FESVLNCSVV-AVIITMLGKEGKV 198

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
             A  +L  +  +    D D     +L+ A A+ G+   A  V+K + +   K T   Y 
Sbjct: 199 SAASSILNNLRKD--GFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPTLITYN 256

Query: 231 IAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           + +N   + G  W     +   M   GV PD+   + LI         E A ++ +E K 
Sbjct: 257 VILNVYGKMGMPWSKISGLVHGMKSSGVAPDDYTYNTLISCCRRGSLYEEAAQVFEEMKL 316

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            G S   +++++L+     ++  ++A+E+ + M+     P++ T N+LI+A      L +
Sbjct: 317 SGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLRE 376

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            ME+   M   G+ P+  TY+ LL   E+    E  + +  + +  G  PN+  F  +I 
Sbjct: 377 AMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIK 436

Query: 410 MCSRR 414
           M   R
Sbjct: 437 MHGNR 441


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 132/566 (23%), Positives = 239/566 (42%), Gaps = 79/566 (13%)

Query: 13  YPNGKHANYAHDVSEQLH-----SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVY 63
           Y   K  + A  V E++      SYN+LI      GRI E + L   M+          Y
Sbjct: 237 YCRSKDVDSAFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTY 296

Query: 64  HARFFNVCKS--QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121
            A    +C+    KA+       +    P L T+N L++    +   + A+++L L++E 
Sbjct: 297 TALIKGLCRKNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKER 356

Query: 122 GLKADCKLYTTLITTCAKSGKVDA---MF-----ENVKPDRVVFNALITACGQSGAVDRA 173
           GL  D + Y   I    KS +V+    +F     E V  + ++++ LI    + G VD A
Sbjct: 357 GLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEA 416

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
             +  +M ++     P+  T  AL+    +AG +  A  ++  + K  +K T   + I I
Sbjct: 417 GCLFEKMLSK--NCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILI 474

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
               + GD++ A      M   G  P     +A I+    AGKV+ A +++ + K +G+ 
Sbjct: 475 GRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVP 534

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---------- 343
               +Y+SL+ A         A ++ + M     +P+  T  +LI  L D          
Sbjct: 535 PDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGE 594

Query: 344 -------------GDQLPKTM------EVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
                        G  + K M      E+  +M+  G  P++  Y  L+    + +++ +
Sbjct: 595 TGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGI 654

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            L LL Q +++G+ P+ ++F  +I  C +  +Y +A  + E ++  +   PQ+E+  T L
Sbjct: 655 ALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMIC-SGHSPQLEHCKT-L 712

Query: 443 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD-----------IRERLVENLGVSADA 491
              +Y E     T     V  K+ GC    YN D           +++ LVE      + 
Sbjct: 713 ICGLYEE---GETERGNSVFKKLRGC---GYNDDEIAWKILIDGMLKQGLVEEFSQLFEE 766

Query: 492 LKRSNLCSLIDGFGEYDPRAFSLLEE 517
           +++ N C+       + PR +S+L +
Sbjct: 767 MEK-NGCN-------FSPRTYSILTQ 784



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 167/368 (45%), Gaps = 26/368 (7%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           VS  ++++N +I    + G + E    +  M + GL        +     C+S K +  A
Sbjct: 188 VSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRS-KDVDSA 246

Query: 81  FRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADC-----KLYTTLI 134
           FR F+ +PN    ++N L+  +C + +  E     +R+      K DC       YT LI
Sbjct: 247 FRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRM------KDDCCYPNVYTYTALI 300

Query: 135 T-TCAKS-----GKVDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              C K+     G +D M E N+ PD + +N+LI    ++G +D A+ +L+ M      +
Sbjct: 301 KGLCRKNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKER--GL 358

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            PD  T G  +     + +V+ AR ++  + +  +     +Y++ I+   + G  + A  
Sbjct: 359 VPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGC 418

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +++ M  K   P+    +ALI     AG ++ A  +  +    G+   + +++ L+G   
Sbjct: 419 LFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRML 478

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
              ++  A +  + M S   KP   T NA I   C   ++ +  +++  MK  G+ P+  
Sbjct: 479 KQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDF 538

Query: 368 TYSILLVA 375
           TY+ L+ A
Sbjct: 539 TYTSLIKA 546



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 177/398 (44%), Gaps = 28/398 (7%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L  YN L+    R G + E   L  +M  +  + MD        NV      +KEA +F 
Sbjct: 157 LKCYNELLTLLARFGLVDEMNQLYTEMLEE-FVSMDIYTFNLMINVYCKMGFVKEAKQFM 215

Query: 85  ------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
                  L P+   ST + ++  C  SKD + AF+V   +      +    Y  LI    
Sbjct: 216 CKMIQAGLSPDYFTST-SFILGYC-RSKDVDSAFRVFEEMPNRNEVS----YNQLIHGLC 269

Query: 139 KSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           ++G++D   ++F  +K     P+   + ALI    +   V +A  +L EM  E + V PD
Sbjct: 270 EAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKN-VHKAMGLLDEM-LERNLV-PD 326

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            IT  +L+     AG +D A  +  ++ +  +      Y   I+   ++   E A  ++D
Sbjct: 327 LITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFD 386

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            +T++GV  + +  S LID     GKV+ A  + ++  ++  S    ++++L+    +A 
Sbjct: 387 SLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAG 446

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
           N ++AL L++ M  + LKPTV T N LI  +          + L  M S G  P   TY+
Sbjct: 447 NLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYN 506

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             +        V+    ++ Q KE+GV P+   +  +I
Sbjct: 507 AFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLI 544



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 153/396 (38%), Gaps = 73/396 (18%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSGKVDAMF--------E 148
           ++  C S+ D+     + R + +  + K   K Y  L+T  A+ G VD M         E
Sbjct: 127 MIKCCYSAPDALFVSDICRKMSKDDITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEE 186

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
            V  D   FN +I    + G V  A   + +M      + PD+ T  + +     +  VD
Sbjct: 187 FVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQA--GLSPDYFTSTSFILGYCRSKDVD 244

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A  V++ +   N                                       EV  + LI
Sbjct: 245 SAFRVFEEMPNRN---------------------------------------EVSYNQLI 265

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKL 327
                AG+++ A  +    K+      + +Y++L+ G C   KN  KA+ L + M    L
Sbjct: 266 HGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCR--KNVHKAMGLLDEMLERNL 323

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P + T N+LI   C    L     +LS MK  GL P+  TY   +    + + VE    
Sbjct: 324 VPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARR 383

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQIENKWTSLALM 445
           L     E+GV  N++M+  +I G C   + ++A  L E +LS N       N +T  AL+
Sbjct: 384 LFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCS----PNAYTFNALI 439

Query: 446 --------------VYREAIVAGTIPTVEVVSKVLG 467
                         ++ + +  G  PTV   + ++G
Sbjct: 440 HGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIG 475



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 58/273 (21%), Positives = 99/273 (36%), Gaps = 70/273 (25%)

Query: 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSV----------------------------- 248
           H   +   P++    I CC    D  F   +                             
Sbjct: 113 HHKIVSDVPKIIVSMIKCCYSAPDALFVSDICRKMSKDDITKLSLKCYNELLTLLARFGL 172

Query: 249 -------YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
                  Y +M ++ V  D    + +I+     G V+ A + + +    G+S    + +S
Sbjct: 173 VDEMNQLYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTS 232

Query: 302 LMGACSNAKNWQKALELYEHMKS--------------------------IKLK-----PT 330
            +     +K+   A  ++E M +                          +++K     P 
Sbjct: 233 FILGYCRSKDVDSAFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPN 292

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           V T  ALI  LC  + + K M +L +M    L P+ ITY+ L+    R   ++    LLS
Sbjct: 293 VYTYTALIKGLCRKN-VHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLS 351

Query: 391 QAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTL 421
             KE G++P+   + C I  +C S R E+AR L
Sbjct: 352 LMKERGLVPDQRTYGCFIDFLCKSNRVEEARRL 384


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 178/396 (44%), Gaps = 13/396 (3%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV       N   ++G + +      +M  +G+L     Y +    +CK+Q   K     
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +V N   P   T+N ++    SS   + A   L+ +   G++ D   Y +L+    K+
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 141 GKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+      MF++     +KP+   +  L+      GA+     +L  M    + + P+H 
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPNHY 375

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
               L+ A A  G+VD+A  V+  + +  +      Y   I    ++G  E A   ++ M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             + + P  +  ++LI       K + A E++ E  ++GI +  I ++S++ +       
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            ++ +L++ M  I +KP + T + LI   C   ++ +  ++L+ M S+G+ P+ +TY+ L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +    +   +E  L+L  + +  GV P+++ +  I+
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIIL 591



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 113/477 (23%), Positives = 205/477 (42%), Gaps = 44/477 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           P L T+ +L+  C  +   +  F  L  V + G + D   +T L+   CA     DAM  
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            ++        P+   +N L+           A ++L  M  +     PD ++   ++  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 201 CANAGQVDRAREVYKMIHKYNIKGT-PEVYT----IAINCCSQTGDWEFACSVYDDMTKK 255
               G +D+A   Y   H+   +G  P V T    IA  C +Q  D   A  V   M K 
Sbjct: 209 FFKEGDLDKAYGTY---HEMLDRGILPNVVTYSSIIAALCKAQAMDK--AMEVLTSMVKN 263

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           GV+P+    ++++     +G+ + A   L++  + G+   +++Y+SLM          +A
Sbjct: 264 GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEA 323

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            ++++ M    LKP ++T   L+        L +   +L  M   G+ PN   +SIL+ A
Sbjct: 324 RKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICA 383

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNEHVLS------ 427
             ++  V+  +++ S+ ++ G+ P+ V +  +IG +C S R E A    E ++       
Sbjct: 384 YAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443

Query: 428 ---FNS--GRPQIENKW---TSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE 479
              +NS      I +KW     L L +    I   TI    ++       ++  +  + +
Sbjct: 444 NIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFD 503

Query: 480 RLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP-CVSFKEI 532
            +V  +GV  D +  S   +LIDG+   G+ D  A  LL    S G+ P CV++  +
Sbjct: 504 LMVR-IGVKPDIITYS---TLIDGYCLAGKMD-EATKLLASMVSVGMKPDCVTYNTL 555



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 174/397 (43%), Gaps = 19/397 (4%)

Query: 21  YAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           ++  V   + +YN L+    + GR +E   + + M ++GL      Y         ++ A
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY-GTLLQGYATKGA 354

Query: 77  IKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           + E      L+     +P    F++L+   A     + A  V   +++ GL  D   Y T
Sbjct: 355 LVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414

Query: 133 LITTCAKSGKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           +I    KSG+V DAM        E + P  +V+N+LI +       D+A +++ EM    
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLD-- 472

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             +  D I   +++ +    G+V  + +++ ++ +  +K     Y+  I+     G  + 
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 532

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  +   M   G+ PD V  + LI+      ++E A  + +E ++ G+S  II+Y+ ++ 
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                +    A ELY  +     +  +ST N ++  LC  +   + + +  ++    L  
Sbjct: 593 GLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
            T T++I++ A  +    +    L +    +G++P++
Sbjct: 653 ETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689


>gi|302824801|ref|XP_002994040.1| hypothetical protein SELMODRAFT_431990 [Selaginella moellendorffii]
 gi|300138094|gb|EFJ04874.1| hypothetical protein SELMODRAFT_431990 [Selaginella moellendorffii]
          Length = 277

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 88/147 (59%), Gaps = 13/147 (8%)

Query: 143 VDAMFENVKPDRVV-FNALITACGQS--GAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +D +F+   P  V+ ++ L+ A   +  GAV RAF+V  E+  E  P+DP+H  +  L+ 
Sbjct: 1   MDLIFQARNPGPVLRWSNLVLAQDHALKGAVKRAFEVFTELKFES-PIDPNHAIMCFLID 59

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           AC+  G  D    VY M+HK  I+G+PE YT A++ CS         S+Y+DM K+ V P
Sbjct: 60  ACSKTG--DGNSTVYTMMHKCGIRGSPEPYTTAVHACSS------HFSIYNDMKKEHVKP 111

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQE 286
           DE+F SALID AGH GK +  F +LQE
Sbjct: 112 DEIFFSALIDVAGHGGKFDCTF-VLQE 137


>gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 689

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 182/410 (44%), Gaps = 32/410 (7%)

Query: 31  SYNRLIRQGRISECID----LLEDMERKG----LLDMDKVYHARFFNV----CK------ 72
           S+++L R G +   +     +L+ + RKG     LD  ++   R F V    C       
Sbjct: 95  SFDKLCRGGTVPFGVSAHGFVLDALFRKGEVTKALDFHRLVMERGFRVDIVSCNKILKGL 154

Query: 73  SQKAIKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           S   I+ A R   LV    P P + TF  L++      + + AF++ +++++ G+  D  
Sbjct: 155 SVDQIEVASRMLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFELFKVMEQRGIAPDLI 214

Query: 129 LYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
            Y+TLI    K+G +         A+ + VK D VVF++ I    + G +  AFDV   M
Sbjct: 215 AYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRM 274

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
             +   + P+ +T   L+K     G++  A  +Y  I K  ++ +   Y+  I+   + G
Sbjct: 275 LCQ--GISPNVVTYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYG 332

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
           +     ++Y+DM K G  PD V    L+D     G +  A     +   Q I   ++ ++
Sbjct: 333 NLRSGFALYEDMIKMGYPPDVVIYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFN 392

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           SL+          +AL+++  M    +KP V+T+  L+       +L + + +   M  +
Sbjct: 393 SLIDGWCRLNRCDEALKVFRLMGIYGIKPDVATITTLMRVTVMEGRLKEGLFLFFRMFKM 452

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
           GL P+ + +  L+ A  +     +GL L    + + +  ++ +   +I +
Sbjct: 453 GLEPDAVAFCTLMDAFCKNMKPTIGLQLFDLMQRNKIPADIAVCNVVINL 502



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 105/225 (46%), Gaps = 3/225 (1%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ +T   L+      G++DRA E++K++ +  I      Y+  I+   + G       +
Sbjct: 176 PNVVTFCTLINGFCKRGEMDRAFELFKVMEQRGIAPDLIAYSTLIDGYFKAGMLGMGHKL 235

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS 307
           +     KGV  D V  S+ ID     G +  AF++ +    QGIS  +++Y+ L+ G C 
Sbjct: 236 FSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRMLCQGISPNVVTYTILIKGLCQ 295

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
           + + ++ A  +Y  +    L+P+V T ++LI   C    L     +  DM  +G  P+ +
Sbjct: 296 DGRIYE-AFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDMIKMGYPPDVV 354

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            Y +L+    ++  +   L    +     + PN+V+F  +I G C
Sbjct: 355 IYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFNSLIDGWC 399



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/442 (18%), Positives = 171/442 (38%), Gaps = 38/442 (8%)

Query: 13  YPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           +    H     DV     + +  ++ G ++   D+ + M  +G+      Y      +C+
Sbjct: 236 FSQALHKGVKLDVVVFSSTIDVYVKFGYLTTAFDVYKRMLCQGISPNVVTYTILIKGLCQ 295

Query: 73  SQKAIKEAF----RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
             + I EAF    +  K    P++ T++ L+       +    F +   + + G   D  
Sbjct: 296 DGR-IYEAFGIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDMIKMGYPPDVV 354

Query: 129 LYTTLITTCAKSG--------KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
           +Y  L+    K G         V  + ++++P+ VVFN+LI    +    D A  V   M
Sbjct: 355 IYGVLVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFNSLIDGWCRLNRCDEALKVFRLM 414

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
              ++ + PD  TI  LM+     G++     ++  + K  ++     +   ++   +  
Sbjct: 415 G--IYGIKPDVATITTLMRVTVMEGRLKEGLFLFFRMFKMGLEPDAVAFCTLMDAFCKNM 472

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
                  ++D M +  +  D    + +I+       VE A +         +   I++Y+
Sbjct: 473 KPTIGLQLFDLMQRNKIPADIAVCNVVINLLFKGQSVEEASKFFNNLLEGKMEPDIVTYN 532

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           +++    + +   +A  ++E +K     P   T+  LI  LC    +   + ++S     
Sbjct: 533 TMICGYCSLRRLDEAARIFEMLKFTPFGPNAVTLTILIHTLCKNSDMDGALRIISPSIIS 592

Query: 361 ------GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR- 413
                 GLC              ++  V+    +  QA +  ++P++V +  +I  C + 
Sbjct: 593 YSIIIDGLC--------------KRGRVDEATNIFHQAIDAKILPDVVAYAILIRGCCKV 638

Query: 414 -RYEKARTLNEHVLSFNSGRPQ 434
            R  +A  L EH+L  N  +P 
Sbjct: 639 GRLVEAALLYEHMLR-NGVKPD 659



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 91/228 (39%), Gaps = 43/228 (18%)

Query: 81  FRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           FR FK+   P    F  LM + C + K + G  Q+  L+Q   + AD  +   +I    K
Sbjct: 447 FRMFKMGLEPDAVAFCTLMDAFCKNMKPTIG-LQLFDLMQRNKIPADIAVCNVVINLLFK 505

Query: 140 SGKVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
              V+     F N+     +PD V +N +I        +D A  +   +  +  P  P+ 
Sbjct: 506 GQSVEEASKFFNNLLEGKMEPDIVTYNTMICGYCSLRRLDEAARIFEML--KFTPFGPNA 563

Query: 192 ITIGALMKA-CANA--------------------------GQVDRAREVYKMIHKYNIKG 224
           +T+  L+   C N+                          G+VD A  ++      + K 
Sbjct: 564 VTLTILIHTLCKNSDMDGALRIISPSIISYSIIIDGLCKRGRVDEATNIFH--QAIDAKI 621

Query: 225 TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            P+V  Y I I  C + G    A  +Y+ M + GV PD++   AL ++
Sbjct: 622 LPDVVAYAILIRGCCKVGRLVEAALLYEHMLRNGVKPDDLLQRALSEY 669


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 162/344 (47%), Gaps = 16/344 (4%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFENV 150
           T++ L+ +C   K+     ++   ++++G++ D  +  TLI   AK G       +F+++
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDM 171

Query: 151 K-PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           +  D   +N L+    Q G  + AF +  +M  +   V PD  T  +++ ACA+A  VD+
Sbjct: 172 REKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQD--SVKPDKRTFVSMLNACADARNVDK 229

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
            RE+Y +I K        V T  IN   + GD   A  V+D++  +    D V  +++I 
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTR----DLVTWTSMIT 285

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G+ + A  + Q  + +G+    +++ SL+ AC++ +  ++  +++  MK +    
Sbjct: 286 GLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDT 345

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            +    A+++       +   +EV   +K      N ++++ ++    +   ++   +  
Sbjct: 346 EIYVGTAILSMYTKCGSMEDALEVFDLVKG----RNVVSWTAMIAGFAQHGRIDEAFLFF 401

Query: 390 SQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFNSG 431
           ++  E G+ PN V F  I+G CS     ++ + + +H++    G
Sbjct: 402 NKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 148/329 (44%), Gaps = 21/329 (6%)

Query: 62  VYHARFFNVCKS-QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           V H ++ N   + Q  +KE  +       P  STF  +++VC SS   E    V  L+ +
Sbjct: 490 VQHEQYDNALATFQALLKEGIK-------PNSSTFTSILNVCKSSDSLELGKWVHFLIMK 542

Query: 121 AGLKADCKLYTTLIT---TCAKSGKVDAMFENV-KPDRVVFNALITACGQSGAVDRAFDV 176
           AGL++D  +   L++    C        +F ++ K D V +N +I    Q G    AFD 
Sbjct: 543 AGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDY 602

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
              M      + PD IT   L+ ACA+   +   R ++ +I +        V T  I+  
Sbjct: 603 FKMMQES--GIKPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMY 660

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           ++ G  E A  V+  + KK V     + S +  +A H G+ + A E+  + + +G+    
Sbjct: 661 TKCGSIEDAHQVFHKLPKKNVYS---WTSMIAGYAQH-GRGKEALELFYQMQQEGVKPDW 716

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           I++   + AC++A   ++ L  ++ MK   ++P +     ++        L + +E +  
Sbjct: 717 ITFVGALSACAHAGLIEEGLHHFQSMKEFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIK 776

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVG 385
           M+   + P++  +  LL AC+   +VE+ 
Sbjct: 777 MQ---VEPDSRVWGALLGACQVHLNVELA 802



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/347 (21%), Positives = 154/347 (44%), Gaps = 45/347 (12%)

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +EAF+  + +      P   TF  +++ CA +++ +   ++  L+ +AG   D  + T L
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 134 IT---TCAKSGKVDAMFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
           I     C   G    +F+N+   D V + ++IT   + G   +A ++   M  E   V P
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEE--GVQP 310

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D +   +L++AC +   +++ ++V+  + +        V T  ++  ++ G  E A  V+
Sbjct: 311 DKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVF 370

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           D +  + V+    + + +  FA H G+++ AF    +    GI    +++ S++GACS+ 
Sbjct: 371 DLVKGRNVVS---WTAMIAGFAQH-GRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSP 426

Query: 310 KNWQKALELYEHM----------------------KSIK---------LKPTVSTMNALI 338
              ++  ++ +H+                       S+K          K  V   NA+I
Sbjct: 427 SALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMI 486

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           TA    +Q    +     +   G+ PN+ T++ +L  C+  D +E+G
Sbjct: 487 TAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG 533



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 89/388 (22%), Positives = 166/388 (42%), Gaps = 49/388 (12%)

Query: 77  IKEAFRFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           I EAF FF K++ +   P   TF  ++  C+S    +   Q+   + EAG  +D ++ T 
Sbjct: 394 IDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTA 453

Query: 133 LITTCAKSGKV-DA--MFENVKPDRVV-FNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
           L++  AK G + DA  +FE +    VV +NA+ITA  Q    D A      +  E   + 
Sbjct: 454 LLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKE--GIK 511

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+  T  +++  C ++  ++  + V+ +I K  ++    V    ++     GD   A ++
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNL 571

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           ++DM K+ ++     ++  +      GK + AF+  +  +  GI    I+++ L+ AC++
Sbjct: 572 FNDMPKRDLVSWNTIIAGFV----QHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACAS 627

Query: 309 AKNWQKALELYE------------------------------HMKSIKL-KPTVSTMNAL 337
            +   +   L+                               H    KL K  V +  ++
Sbjct: 628 PEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSM 687

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           I       +  + +E+   M+  G+ P+ IT+   L AC     +E GL      KE  +
Sbjct: 688 IAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNI 747

Query: 398 IPNLVMFKCIIGMCSRRYEKARTLNEHV 425
            P +  + C++ +  R    A  LNE V
Sbjct: 748 EPRMEHYGCMVDLFGR----AGLLNEAV 771



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 12/183 (6%)

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
           C V+ D      I D    +A+++    AG+   A ++L+   +  I +   +YS+L+  
Sbjct: 66  CVVFAD------IKDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQL 119

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           C   KN      +Y H+K   ++P +   N LI             ++  DM+      +
Sbjct: 120 CIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMRE----KD 175

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNE 423
             ++++LL    +    E    L  Q  +D V P+   F  ++  C  +R  +K R L  
Sbjct: 176 VYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYN 235

Query: 424 HVL 426
            +L
Sbjct: 236 LIL 238


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 167/433 (38%), Gaps = 83/433 (19%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKE 79
           A DV       N +  QG + + + LL D+   G       Y+A    +C +++   ++E
Sbjct: 189 ALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQE 248

Query: 80  AFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
                 ++   P + TFN L+S    +   E   +VL  + E G   D ++Y T+I    
Sbjct: 249 LMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGIC 308

Query: 139 KSGKVDAMFE--------NVKP-----------------------------------DRV 155
           K G +    E         +KP                                   D V
Sbjct: 309 KEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDV 368

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
            FN L+    Q+G VDR  ++L +M   VH   PD IT   ++      G +D A  + K
Sbjct: 369 TFNILVDFFCQNGLVDRVIELLEQM--LVHGCMPDVITYTTVINGFCKEGLIDEAVMLLK 426

Query: 216 MIHKYNIKGTPEVYTIA-----------------------------------INCCSQTG 240
            +     K     YTI                                    IN   + G
Sbjct: 427 SMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKG 486

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
             E A  +   M   G  PD +  S +ID  G AGK + A E+L    N+G+S   I YS
Sbjct: 487 LVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYS 546

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           S+  A S      K ++++++++   ++      NA+I++LC   +  + +E L+ M S 
Sbjct: 547 SIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSS 606

Query: 361 GLCPNTITYSILL 373
           G  PN  TY+IL+
Sbjct: 607 GCVPNESTYTILI 619



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 103/455 (22%), Positives = 192/455 (42%), Gaps = 27/455 (5%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  V    ++Y  ++R    +GRI++ + +L++M R+G   +  +YH      C+     
Sbjct: 115 AVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRG-GGF 173

Query: 78  KEAFRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           + A R  + +        +   N++++        + A  +LR +   G + D   Y  +
Sbjct: 174 RSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAV 233

Query: 134 I---TTCAKSGKVDAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +       + G V  + E +      P+ V FN LI+   ++G  +R  +VLA+M AE H
Sbjct: 234 LKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQM-AE-H 291

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
              PD      ++      G +  A E+   +  Y +K     Y   +        WE  
Sbjct: 292 GCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEET 351

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +  +M  K    D+V  + L+DF    G V+   E+L++    G    +I+Y++++  
Sbjct: 352 EELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVING 411

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP- 364
                   +A+ L + M +   KP   +   ++  LC  ++     +++S M   G CP 
Sbjct: 412 FCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG-CPL 470

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTL 421
           N IT++ L+    +K  VE  + LL Q   +G  P+L+ +  +I   G   +  E    L
Sbjct: 471 NPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELL 530

Query: 422 NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 456
           N  V   N G       ++S+A  + RE  +   I
Sbjct: 531 NVMV---NKGMSPNTIIYSSIASALSREGRINKVI 562



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 125/267 (46%), Gaps = 7/267 (2%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +NA++    ++G ++ A  + A +     PV P+  T   +++A    G++  A  V   
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV-----PVPPNAYTYFPVVRALCARGRIADALAVLDE 147

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           + +      P +Y + +    + G +  A  V +D+  +G   D    + +++     G 
Sbjct: 148 MPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGS 207

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           V+ A  +L++  + G    ++SY++++     AK W    EL E M  +   P + T N 
Sbjct: 208 VDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 267

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           LI+ LC      +  EVL+ M   G  P+   Y+ ++    ++  ++V   +L++    G
Sbjct: 268 LISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYG 327

Query: 397 VIPNLVMFKCII-GMCS-RRYEKARTL 421
           + PN+V +  ++ G+CS  R+E+   L
Sbjct: 328 LKPNVVCYNTLLKGLCSAERWEETEEL 354


>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
          Length = 1435

 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 146/328 (44%), Gaps = 12/328 (3%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG------KVD 144
           T+  FN +M V A S   + A Q+L  + + G+  D   + TLI   +KSG       +D
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALD 279

Query: 145 AMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            +FE     ++PD + +N LI+AC QS  ++ A  V  +M A      PD  T  A++  
Sbjct: 280 LLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIAS--ECRPDLWTYNAMVSV 337

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G+ + A  +++ + +         Y   +   ++ G+ +      + + K G   +
Sbjct: 338 HGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKN 397

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           E+  + +I   G  G+++ A  +  E +  G +   ++Y+ ++ +        +A ++ E
Sbjct: 398 EITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLE 457

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    LKPT+   +ALI A   G +          M + G+ P+ + Y ++L    R  
Sbjct: 458 DMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSG 517

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           D E  L L  +   D   P+  M++ ++
Sbjct: 518 DTEKMLCLYRKMMNDNYRPDDDMYQVLL 545



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 143/308 (46%), Gaps = 18/308 (5%)

Query: 89  NPTLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-- 144
           +P L +FN L++  + S    +  A  +L  V+++GL+ D   Y TLI+ C++S  ++  
Sbjct: 253 DPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDA 312

Query: 145 -AMFENV-----KPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
             +FE++     +PD   +NA+++    CG++   +R F  L E         PD IT  
Sbjct: 313 VTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKG-----FMPDAITYN 367

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+ A A  G VD+     + + K   K     Y   I+   + G  + A  +YD+M   
Sbjct: 368 SLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAM 427

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  PD V  + +ID  G   ++  A ++L++  + G+   +I++S+L+ A +       A
Sbjct: 428 GCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADA 487

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
              ++ M +  +KP       ++          K + +   M +    P+   Y +LLVA
Sbjct: 488 ENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVA 547

Query: 376 CERKDDVE 383
             ++D  E
Sbjct: 548 LAKEDKCE 555



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 148/339 (43%), Gaps = 16/339 (4%)

Query: 85   KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
            K  P PT+ + N +M         +  + V+  +Q+   K        L+   AK+G V 
Sbjct: 808  KTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDV- 866

Query: 145  AMFENVK-----------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
              FE +K           P+  ++ ++I+             ++AEM  E     PD   
Sbjct: 867  --FEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEM--EGAGFKPDLAI 922

Query: 194  IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
            + AL+     AG  DR  +VY+ I +  ++   + Y   I    ++   E   ++ ++M 
Sbjct: 923  LNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMG 982

Query: 254  KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            K+G+ P      +L+  +  A   E A +I +E +++   +    Y  +M    NA N  
Sbjct: 983  KRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHS 1042

Query: 314  KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            KA  L   MK   ++PT++TM+ L+T+     Q  +   VL+++KS  L  +T+ YS + 
Sbjct: 1043 KAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVF 1102

Query: 374  VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
             A  +  D   G   L + K DGV P+  ++ C I   S
Sbjct: 1103 DAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFIRAAS 1141



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 128/264 (48%), Gaps = 16/264 (6%)

Query: 152 PDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           PD V F  ++ A G+S    A+D AF+ LA  +A      P    +  ++     A Q  
Sbjct: 155 PDEVAF--VVRAVGESSWRRALD-AFEWLARSSA------PASRAVAVVLGVLGRARQDS 205

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A EV+  +       T +V+   +   +++G ++ A  + D M  +G+ PD V  + LI
Sbjct: 206 IAEEVF--LRFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLI 263

Query: 269 DFAGHAGKVEA--AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           +    +G + A  A ++L E +  G+   +I+Y++L+ ACS + N + A+ ++E M + +
Sbjct: 264 NARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASE 323

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
            +P + T NA+++      +  +   +  ++   G  P+ ITY+ LL A  ++ +V+   
Sbjct: 324 CRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVE 383

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGM 410
               Q  + G   N + +  +I M
Sbjct: 384 HTCEQLVKAGFKKNEITYNTMIHM 407



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/387 (20%), Positives = 151/387 (39%), Gaps = 68/387 (17%)

Query: 153  DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
            DR ++NALI A  +SG  ++A  V   M  +  P+ P   ++  +M+A    G++D    
Sbjct: 779  DRRIWNALIHAYAESGLYEKARAVFDNM-IKTGPL-PTVDSVNGMMRALIVDGRLDELYV 836

Query: 213  VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
            V + +   N K +     + ++  ++ GD      +Y+ M   G +P+     ++I    
Sbjct: 837  VVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLC 896

Query: 273  HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            H  +      ++ E +  G                                    KP ++
Sbjct: 897  HHNRFRDVELMIAEMEGAG-----------------------------------FKPDLA 921

Query: 333  TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
             +NAL+          +T +V   +   GL P+  TY+ L+V   R    E G  LL++ 
Sbjct: 922  ILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEM 981

Query: 393  KEDGVIPNLVMFKCIIG-----------------MCSRRYEKARTLNEHVLSF--NSG-R 432
             + G+ P L  +K ++                  M S+ Y+  R++   ++    N+G  
Sbjct: 982  GKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNH 1041

Query: 433  PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADAL 492
             + EN      L V +E  +  TI T+ ++    G    P  A   E ++ NL  S+  +
Sbjct: 1042 SKAEN-----LLAVMKEDGIEPTIATMHILMTSYGTAGQPREA---ENVLNNLKSSSLEV 1093

Query: 493  KRSNLCSLIDGF---GEYDPRAFSLLE 516
                  ++ D +   G+Y+     LLE
Sbjct: 1094 STLPYSTVFDAYLKNGDYNHGTTKLLE 1120



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 94/215 (43%), Gaps = 10/215 (4%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
            P   T+N L+ +   S   E  F +L  + + GL    + Y +L+   AK+    + D +
Sbjct: 953  PDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQI 1012

Query: 147  FENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            FE ++      +R +++ ++     +G   +A ++LA M  +   ++P   T+  LM + 
Sbjct: 1013 FEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKED--GIEPTIATMHILMTSY 1070

Query: 202  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              AGQ   A  V   +   +++ +   Y+   +   + GD+    +   +M + GV PD 
Sbjct: 1071 GTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDH 1130

Query: 262  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
               +  I  A    +   A  +L+  ++ G  + I
Sbjct: 1131 QVWTCFIRAASLCEQTADAILLLKSLQDCGFDLPI 1165



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 90/208 (43%), Gaps = 9/208 (4%)

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           + +P+     +    ++  W  A   ++ + +    P    ++ ++   G A +   A E
Sbjct: 152 RASPDEVAFVVRAVGESS-WRRALDAFEWLARSSA-PASRAVAVVLGVLGRARQDSIAEE 209

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +      +G +V +  ++++MG  + +  +  A +L + M    + P + + N LI A  
Sbjct: 210 VFLRFAGEGATVQV--FNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARS 267

Query: 343 DGDQLPK--TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
               L     +++L +++  GL P+ ITY+ L+ AC +  ++E  + +          P+
Sbjct: 268 KSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPD 327

Query: 401 LVMFKCII---GMCSRRYEKARTLNEHV 425
           L  +  ++   G C +  E  R   E V
Sbjct: 328 LWTYNAMVSVHGRCGKAEEAERLFRELV 355



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 140/348 (40%), Gaps = 32/348 (9%)

Query: 35   LIRQGRISE---CIDLLEDMERK-----GLLDMDKVYHA-RFFNVCKSQKAIKEAFRFFK 85
            LI  GR+ E    ++ L+DM  K      LL +D    A   F V K    +K A     
Sbjct: 825  LIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAA----G 880

Query: 86   LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
             +PN  L   +M+  +C  ++  +    +  + + AG K D  +   L+     +G  D 
Sbjct: 881  YLPNMHLYR-SMISLLCHHNRFRDVELMIAEM-EGAGFKPDLAILNALLNMYTAAGNFDR 938

Query: 146  MFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
              +         ++PD   +N LI    +S   +  F +L EM      + P   +  +L
Sbjct: 939  TTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGK--RGLTPKLQSYKSL 996

Query: 198  MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            + A A A   ++A ++++ +   + +    +Y + +      G+   A ++   M + G+
Sbjct: 997  LAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGI 1056

Query: 258  IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             P    +  L+   G AG+   A  +L   K+  + V  + YS++  A     ++     
Sbjct: 1057 EPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTT 1116

Query: 318  LYEHMKSIKLKPTVSTMNALITA--LCDGDQLPKTMEVLSDMKSLGLC 363
                MK   ++P        I A  LC+     +T + +  +KSL  C
Sbjct: 1117 KLLEMKRDGVEPDHQVWTCFIRAASLCE-----QTADAILLLKSLQDC 1159


>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
          Length = 1438

 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 146/328 (44%), Gaps = 12/328 (3%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG------KVD 144
           T+  FN +M V A S   + A Q+L  + + G+  D   + TLI   +KSG       +D
Sbjct: 220 TVQVFNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARSKSGCLAAGVALD 279

Query: 145 AMFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            +FE     ++PD + +N LI+AC QS  ++ A  V  +M A      PD  T  A++  
Sbjct: 280 LLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIAS--ECRPDLWTYNAMVSV 337

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G+ + A  +++ + +         Y   +   ++ G+ +      + + K G   +
Sbjct: 338 HGRCGKAEEAERLFRELVEKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQLVKAGFKKN 397

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           E+  + +I   G  G+++ A  +  E +  G +   ++Y+ ++ +        +A ++ E
Sbjct: 398 EITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLE 457

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    LKPT+   +ALI A   G +          M + G+ P+ + Y ++L    R  
Sbjct: 458 DMTDAGLKPTLIAFSALICAYAKGGRRADAENTFDCMIASGVKPDRLAYLVMLDVFARSG 517

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           D E  L L  +   D   P+  M++ ++
Sbjct: 518 DTEKMLCLYRKMMNDNYRPDDDMYQVLL 545



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 143/308 (46%), Gaps = 18/308 (5%)

Query: 89  NPTLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD-- 144
           +P L +FN L++  + S    +  A  +L  V+++GL+ D   Y TLI+ C++S  ++  
Sbjct: 253 DPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDA 312

Query: 145 -AMFENV-----KPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
             +FE++     +PD   +NA+++    CG++   +R F  L E         PD IT  
Sbjct: 313 VTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKG-----FMPDAITYN 367

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+ A A  G VD+     + + K   K     Y   I+   + G  + A  +YD+M   
Sbjct: 368 SLLYAFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAM 427

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  PD V  + +ID  G   ++  A ++L++  + G+   +I++S+L+ A +       A
Sbjct: 428 GCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGGRRADA 487

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
              ++ M +  +KP       ++          K + +   M +    P+   Y +LLVA
Sbjct: 488 ENTFDCMIASGVKPDRLAYLVMLDVFARSGDTEKMLCLYRKMMNDNYRPDDDMYQVLLVA 547

Query: 376 CERKDDVE 383
             ++D  E
Sbjct: 548 LAKEDKCE 555



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 148/339 (43%), Gaps = 16/339 (4%)

Query: 85   KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
            K  P PT+ + N +M         +  + V+  +Q+   K        L+   AK+G V 
Sbjct: 808  KTGPLPTVDSVNGMMRALIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDV- 866

Query: 145  AMFENVK-----------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
              FE +K           P+  ++ ++I+             ++AEM  E     PD   
Sbjct: 867  --FEVMKIYNGMKAAGYLPNMHLYRSMISLLCHHNRFRDVELMIAEM--EGAGFKPDLAI 922

Query: 194  IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
            + AL+     AG  DR  +VY+ I +  ++   + Y   I    ++   E   ++ ++M 
Sbjct: 923  LNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMG 982

Query: 254  KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            K+G+ P      +L+  +  A   E A +I +E +++   +    Y  +M    NA N  
Sbjct: 983  KRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHS 1042

Query: 314  KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            KA  L   MK   ++PT++TM+ L+T+     Q  +   VL+++KS  L  +T+ YS + 
Sbjct: 1043 KAENLLAVMKEDGIEPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVF 1102

Query: 374  VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
             A  +  D   G   L + K DGV P+  ++ C I   S
Sbjct: 1103 DAYLKNGDYNHGTTKLLEMKRDGVEPDHQVWTCFIRAAS 1141



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 136/276 (49%), Gaps = 20/276 (7%)

Query: 143 VDAMFENVK--PDRVVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
           VD + +  +  PD V F  ++ A G+S    A+D AF+ LA  +A      P    +  +
Sbjct: 144 VDDVLDGARASPDEVAF--VVRAVGESSWRRALD-AFEWLARSSA------PASRAVAVV 194

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           +     A Q   A EV+    ++  +G T +V+   +   +++G ++ A  + D M  +G
Sbjct: 195 LGVLGRARQDSIAEEVFL---RFAGEGATVQVFNAMMGVYARSGRFDDARQLLDTMHDRG 251

Query: 257 VIPDEVFLSALIDFAGHAGKVEA--AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           + PD V  + LI+    +G + A  A ++L E +  G+   +I+Y++L+ ACS + N + 
Sbjct: 252 IDPDLVSFNTLINARSKSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLED 311

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A+ ++E M + + +P + T NA+++      +  +   +  ++   G  P+ ITY+ LL 
Sbjct: 312 AVTVFEDMIASECRPDLWTYNAMVSVHGRCGKAEEAERLFRELVEKGFMPDAITYNSLLY 371

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
           A  ++ +V+       Q  + G   N + +  +I M
Sbjct: 372 AFAKEGNVDKVEHTCEQLVKAGFKKNEITYNTMIHM 407



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 81/387 (20%), Positives = 151/387 (39%), Gaps = 68/387 (17%)

Query: 153  DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
            DR ++NALI A  +SG  ++A  V   M  +  P+ P   ++  +M+A    G++D    
Sbjct: 779  DRRIWNALIHAYAESGLYEKARAVFDNM-IKTGPL-PTVDSVNGMMRALIVDGRLDELYV 836

Query: 213  VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
            V + +   N K +     + ++  ++ GD      +Y+ M   G +P+     ++I    
Sbjct: 837  VVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAAGYLPNMHLYRSMISLLC 896

Query: 273  HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            H  +      ++ E +  G                                    KP ++
Sbjct: 897  HHNRFRDVELMIAEMEGAG-----------------------------------FKPDLA 921

Query: 333  TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
             +NAL+          +T +V   +   GL P+  TY+ L+V   R    E G  LL++ 
Sbjct: 922  ILNALLNMYTAAGNFDRTTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEM 981

Query: 393  KEDGVIPNLVMFKCIIG-----------------MCSRRYEKARTLNEHVLSF--NSG-R 432
             + G+ P L  +K ++                  M S+ Y+  R++   ++    N+G  
Sbjct: 982  GKRGLTPKLQSYKSLLAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNH 1041

Query: 433  PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADAL 492
             + EN      L V +E  +  TI T+ ++    G    P  A   E ++ NL  S+  +
Sbjct: 1042 SKAEN-----LLAVMKEDGIEPTIATMHILMTSYGTAGQPREA---ENVLNNLKSSSLEV 1093

Query: 493  KRSNLCSLIDGF---GEYDPRAFSLLE 516
                  ++ D +   G+Y+     LLE
Sbjct: 1094 STLPYSTVFDAYLKNGDYNHGTTKLLE 1120



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 94/215 (43%), Gaps = 10/215 (4%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
            P   T+N L+ +   S   E  F +L  + + GL    + Y +L+   AK+    + D +
Sbjct: 953  PDEDTYNTLIVMYCRSFRPEEGFTLLNEMGKRGLTPKLQSYKSLLAASAKAELREQADQI 1012

Query: 147  FENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            FE ++      +R +++ ++     +G   +A ++LA M  +   ++P   T+  LM + 
Sbjct: 1013 FEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKED--GIEPTIATMHILMTSY 1070

Query: 202  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              AGQ   A  V   +   +++ +   Y+   +   + GD+    +   +M + GV PD 
Sbjct: 1071 GTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTTKLLEMKRDGVEPDH 1130

Query: 262  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
               +  I  A    +   A  +L+  ++ G  + I
Sbjct: 1131 QVWTCFIRAASLCEQTADAILLLKSLQDCGFDLPI 1165



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/208 (19%), Positives = 90/208 (43%), Gaps = 9/208 (4%)

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           + +P+     +    ++  W  A   ++ + +    P    ++ ++   G A +   A E
Sbjct: 152 RASPDEVAFVVRAVGESS-WRRALDAFEWLARSSA-PASRAVAVVLGVLGRARQDSIAEE 209

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +      +G +V +  ++++MG  + +  +  A +L + M    + P + + N LI A  
Sbjct: 210 VFLRFAGEGATVQV--FNAMMGVYARSGRFDDARQLLDTMHDRGIDPDLVSFNTLINARS 267

Query: 343 DGDQLPK--TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
               L     +++L +++  GL P+ ITY+ L+ AC +  ++E  + +          P+
Sbjct: 268 KSGCLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPD 327

Query: 401 LVMFKCII---GMCSRRYEKARTLNEHV 425
           L  +  ++   G C +  E  R   E V
Sbjct: 328 LWTYNAMVSVHGRCGKAEEAERLFRELV 355



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 140/348 (40%), Gaps = 32/348 (9%)

Query: 35   LIRQGRISE---CIDLLEDMERK-----GLLDMDKVYHA-RFFNVCKSQKAIKEAFRFFK 85
            LI  GR+ E    ++ L+DM  K      LL +D    A   F V K    +K A     
Sbjct: 825  LIVDGRLDELYVVVEELQDMNFKISKSTVLLLLDAFAKAGDVFEVMKIYNGMKAA----G 880

Query: 86   LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
             +PN  L   +M+  +C  ++  +    +  + + AG K D  +   L+     +G  D 
Sbjct: 881  YLPNMHLYR-SMISLLCHHNRFRDVELMIAEM-EGAGFKPDLAILNALLNMYTAAGNFDR 938

Query: 146  MFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
              +         ++PD   +N LI    +S   +  F +L EM      + P   +  +L
Sbjct: 939  TTQVYRSILEAGLEPDEDTYNTLIVMYCRSFRPEEGFTLLNEMGK--RGLTPKLQSYKSL 996

Query: 198  MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            + A A A   ++A ++++ +   + +    +Y + +      G+   A ++   M + G+
Sbjct: 997  LAASAKAELREQADQIFEEMRSKSYQLNRSIYHMMMKIYRNAGNHSKAENLLAVMKEDGI 1056

Query: 258  IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             P    +  L+   G AG+   A  +L   K+  + V  + YS++  A     ++     
Sbjct: 1057 EPTIATMHILMTSYGTAGQPREAENVLNNLKSSSLEVSTLPYSTVFDAYLKNGDYNHGTT 1116

Query: 318  LYEHMKSIKLKPTVSTMNALITA--LCDGDQLPKTMEVLSDMKSLGLC 363
                MK   ++P        I A  LC+     +T + +  +KSL  C
Sbjct: 1117 KLLEMKRDGVEPDHQVWTCFIRAASLCE-----QTADAILLLKSLQDC 1159


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 157/345 (45%), Gaps = 12/345 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P   T N L+           AF     +   G   D   Y TLI    K G+  A  +
Sbjct: 4   HPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALD 63

Query: 149 N--------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    V+ + V++N +I    +   V+ AFD+ +EM ++   + P+ +T  AL+  
Sbjct: 64  LLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSK--GISPNVVTYSALISG 121

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G++  A +++  I   NIK     + I ++   +    +   +V+  M K+G+IPD
Sbjct: 122 FFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPD 181

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  ++L+D      +V  A  I       G++  I SY+ L+      K   KA+ L+ 
Sbjct: 182 VVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFN 241

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    + P V T N+LI  L    ++   ++++  M   G+ PN +TY+ ++ A  +  
Sbjct: 242 EMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTH 301

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNE 423
            V+  + L+++ K+ G+ P++  +  +I G+C   R + AR + E
Sbjct: 302 QVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGGRLKDARNIFE 346



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 153/336 (45%), Gaps = 40/336 (11%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFF- 84
           SY  LI    + G     +DLL+ ++ K L+ ++ V Y+   + +CK  K + +AF  + 
Sbjct: 44  SYGTLIHGLCKVGETRAALDLLQRVDGK-LVQLNAVMYNTVIYGMCKD-KHVNDAFDLYS 101

Query: 85  KLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           ++V    +P + T++ L+S         G F V        LK    L+  +I       
Sbjct: 102 EMVSKGISPNVVTYSALIS---------GFFVV------GKLKDAIDLFNKII------- 139

Query: 142 KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 EN+KPD   FN L+    +   +     V A M  +   + PD +T  +L+   
Sbjct: 140 -----LENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQ--GIIPDVVTYNSLVDGY 192

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               +V+ A+ ++  + +  +      Y I IN   +    + A +++++M  K +IP+ 
Sbjct: 193 RLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNV 252

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  ++LID    +G++  A +++ +  ++G+   I++Y+S++ A        KA+ L   
Sbjct: 253 VTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITK 312

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
            K   ++P++ T   LI  LC G +L     +  D+
Sbjct: 313 FKDQGIQPSMYTYTILIDGLCKGGRLKDARNIFEDL 348



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 118/282 (41%), Gaps = 41/282 (14%)

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  P+ + L+ LI      G++  AF    +    G  +  +SY +L+         + A
Sbjct: 2   GYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAA 61

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-- 373
           L+L + +    ++      N +I  +C    +    ++ S+M S G+ PN +TYS L+  
Sbjct: 62  LDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 121

Query: 374 --VACERKDDVEV-GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS 430
             V  + KD +++   ++L   K DG   N++    + G C  R                
Sbjct: 122 FFVVGKLKDAIDLFNKIILENIKPDGYTFNIL----VDGFCKDR---------------- 161

Query: 431 GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GV 487
              +++   T  A+M+ +     G IP V   + ++   +L    +  + +   +   GV
Sbjct: 162 ---KMKEGKTVFAMMMKQ-----GIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGV 213

Query: 488 SADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVPCV 527
           + D ++  N+  LI+GF +     +A +L  E     I+P V
Sbjct: 214 NPD-IRSYNI--LINGFCKIKKVDKAMNLFNEMHCKNIIPNV 252


>gi|242038885|ref|XP_002466837.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
 gi|241920691|gb|EER93835.1| hypothetical protein SORBIDRAFT_01g014995 [Sorghum bicolor]
          Length = 1014

 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 144/324 (44%), Gaps = 10/324 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           P  +++N+LM           +  + + +   G++ D   Y  LI   ++ G +D     
Sbjct: 657 PNSASYNILMHGYVKGGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKF 716

Query: 145 ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               + E + PDR+VF+ LITA  +   +  A  +   M  +   + P   T  A++   
Sbjct: 717 LEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQLFNCM--KWLRMSPSSKTYSAMINGL 774

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                +D++ EV + + +  ++     Y   +N   + G  + A  + ++M   G++P +
Sbjct: 775 IRKNYLDQSHEVLREMLQVGLQPNHTHYIALVNAKCRVGKIDRAFRLKEEMKALGIVPAD 834

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  S++I      GK+E A  +       G+   + ++++LM           AL L   
Sbjct: 835 VAESSIIRGLCKCGKLEEAVIVFSTMMRSGMVPTVATFTTLMHCLCKESKIADALHLKRL 894

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+S +LK  V + N LIT LC   ++   +++  +MKS GL PN  TY  L  A      
Sbjct: 895 MESCRLKVDVVSYNVLITGLCKDKRISDALDLYEEMKSKGLWPNVTTYITLTGAMYSTGI 954

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFK 405
           ++ G  LL   +E G+IP  V  +
Sbjct: 955 MQNGEELLEDIEERGLIPVYVQLE 978



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 125/521 (23%), Positives = 217/521 (41%), Gaps = 53/521 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           S+N +I     +G I E   + + M R G       Y      +C+    ++     F L
Sbjct: 450 SFNCIIDSYCHRGNIVEAFTVYDAMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFCL 509

Query: 87  VPNPTL---STFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +  P+     TFN +L+ +C      E      ++V+   L  D   YT L++   + GK
Sbjct: 510 LDIPSAIDEKTFNALLLGICKYGTLDEALDLCEKMVKNNCL-PDIHTYTILLSGFCRKGK 568

Query: 143 V-------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +         M +  V PD V +  L+      G V  A  V  E+  +   +  D I  
Sbjct: 569 ILPALIMLQMMLDKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICK-EGLYADCIAY 627

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +LM      G ++  + +   +++  +      Y I ++   + G +  +  +Y  M +
Sbjct: 628 NSLMNGYLKGGNINTIKRMMSDMYQSEVYPNSASYNILMHGYVKGGQFSKSLYLYKYMVR 687

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           KG+ PD V    LI      G ++ A + L++   +GI    + +  L+ A S       
Sbjct: 688 KGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHN 747

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           AL+L+  MK +++ P+  T +A+I  L   + L ++ EVL +M  +GL PN   Y  L+ 
Sbjct: 748 ALQLFNCMKWLRMSPSSKTYSAMINGLIRKNYLDQSHEVLREMLQVGLQPNHTHYIALVN 807

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRP 433
           A  R   ++    L  + K  G++P  V    II G+C     K   L E          
Sbjct: 808 AKCRVGKIDRAFRLKEEMKALGIVPADVAESSIIRGLC-----KCGKLEE---------- 852

Query: 434 QIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL---QLPYNADIRERLVENLGVSAD 490
                    A++V+   + +G +PTV   + ++ CL       +A   +RL+E+  +  D
Sbjct: 853 ---------AVIVFSTMMRSGMVPTVATFTTLMHCLCKESKIADALHLKRLMESCRLKVD 903

Query: 491 ALKRSNLCSLIDGFGEYDPR---AFSLLEEAASFGIVPCVS 528
            +  +    LI G  + D R   A  L EE  S G+ P V+
Sbjct: 904 VVSYN---VLITGLCK-DKRISDALDLYEEMKSKGLWPNVT 940



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/398 (20%), Positives = 175/398 (43%), Gaps = 20/398 (5%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA-FRF 83
           +H+Y  L+    R+G+I   + +L+ M  KG++  D V +    N   ++  +K A + F
Sbjct: 553 IHTYTILLSGFCRKGKILPALIMLQMMLDKGVVP-DTVAYTCLLNGLINEGQVKAASYVF 611

Query: 84  FKLVPNPTLST----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
            +++    L      +N LM+      +     +++  + ++ +  +   Y  L+    K
Sbjct: 612 QEIICKEGLYADCIAYNSLMNGYLKGGNINTIKRMMSDMYQSEVYPNSASYNILMHGYVK 671

Query: 140 SGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            G+             + ++PD V +  LI    + G +D A   L +M  E   + PD 
Sbjct: 672 GGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLE--GIFPDR 729

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +    L+ A +   ++  A +++  +    +  + + Y+  IN   +    + +  V  +
Sbjct: 730 LVFDILITAFSEKSKMHNALQLFNCMKWLRMSPSSKTYSAMINGLIRKNYLDQSHEVLRE 789

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M + G+ P+     AL++     GK++ AF + +E K  GI    ++ SS++        
Sbjct: 790 MLQVGLQPNHTHYIALVNAKCRVGKIDRAFRLKEEMKALGIVPADVAESSIIRGLCKCGK 849

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            ++A+ ++  M    + PTV+T   L+  LC   ++   + +   M+S  L  + ++Y++
Sbjct: 850 LEEAVIVFSTMMRSGMVPTVATFTTLMHCLCKESKIADALHLKRLMESCRLKVDVVSYNV 909

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           L+    +   +   L L  + K  G+ PN+  +  + G
Sbjct: 910 LITGLCKDKRISDALDLYEEMKSKGLWPNVTTYITLTG 947



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/389 (21%), Positives = 152/389 (39%), Gaps = 64/389 (16%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           LH Y   +++GR    + +LEDMER                                 +P
Sbjct: 264 LHWY---VKKGRFKAALCVLEDMERDS-------------------------------IP 289

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
              + T+N+++      K S  AF +L+ +++  L  D   Y TLI      GK++    
Sbjct: 290 -ADIYTYNIMIDKLCRIKRSARAFLLLKRMRKDDLIPDECTYNTLINGFFGEGKINHAHY 348

Query: 145 ----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                + +   P    +  +I    ++  +D+A  VL+EM  ++  V P  I+       
Sbjct: 349 VFNHMLRQTFVPSVATYTTMIDGYCRNRRIDKALSVLSEM--QITGVMPSEIS------- 399

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                   +A+++ K + +  I      Y+  IN    T    F       M++  +  D
Sbjct: 400 --------KAKQILKSMLEDGIDPDIVTYSALINEGMITEAEHFR----QYMSRMKISFD 447

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + +ID   H G +  AF +       G S  + +Y +L+       +  +A +   
Sbjct: 448 SVSFNCIIDSYCHRGNIVEAFTVYDAMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMF 507

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            +  I       T NAL+  +C    L + +++   M      P+  TY+ILL    RK 
Sbjct: 508 CLLDIPSAIDEKTFNALLLGICKYGTLDEALDLCEKMVKNNCLPDIHTYTILLSGFCRKG 567

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            +   L++L    + GV+P+ V + C++ 
Sbjct: 568 KILPALIMLQMMLDKGVVPDTVAYTCLLN 596



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/282 (19%), Positives = 116/282 (41%), Gaps = 20/282 (7%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           K   +  N ++ A  + G     +  L E  A   P+D    T   L+ +    G+  +A
Sbjct: 185 KASPIACNTILRALVEQGESKYVWLFLRESLAHNFPLDVT--TCNILLNSLCTNGEFRKA 242

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            ++ + +    +  +   Y   ++   + G ++ A  V +DM +  +  D    + +ID 
Sbjct: 243 EDMLQKMKTCRLSNSV-TYNTILHWYVKKGRFKAALCVLEDMERDSIPADIYTYNIMIDK 301

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
                +   AF +L+  +   +     +Y++L+           A  ++ HM      P+
Sbjct: 302 LCRIKRSARAFLLLKRMRKDDLIPDECTYNTLINGFFGEGKINHAHYVFNHMLRQTFVPS 361

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           V+T   +I   C   ++ K + VLS+M+  G+ P+ I+ +                 +L 
Sbjct: 362 VATYTTMIDGYCRNRRIDKALSVLSEMQITGVMPSEISKA---------------KQILK 406

Query: 391 QAKEDGVIPNLVMFKCII--GMCSRRYEKARTLNEHVLSFNS 430
              EDG+ P++V +  +I  GM +      + ++   +SF+S
Sbjct: 407 SMLEDGIDPDIVTYSALINEGMITEAEHFRQYMSRMKISFDS 448


>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1188

 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/307 (26%), Positives = 145/307 (47%), Gaps = 13/307 (4%)

Query: 127 CKLYTTLITTCAKSGKVDAMFENVK---PDRV---VFNALITACGQSGAVDRAFDVLAEM 180
           CK    +++   + G V  + E ++   P+ +   +F  LI     +  V +A +VL EM
Sbjct: 137 CKSMVKILSKMRQFGAVWGLIEEMRKENPELIEPELFVVLIRRFASANMVKKAVEVLDEM 196

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
               +  +PD    G L+ A    G V  A +V++ + +  I      +T  +    + G
Sbjct: 197 PK--YGFEPDEYVFGCLLDALCKNGSVKDASKVFEDMRE-KIPPNLRYFTSLLYGWCREG 253

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
               A  V   M + G+ PD V  + L+    HAGK+  A+++L + + +G       Y+
Sbjct: 254 KLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLLNDMRKRGYEPNANCYT 313

Query: 301 SLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
            L+ A C   K   +A+ ++  M+    +  + T  ALI+  C    + K   VL DM+ 
Sbjct: 314 VLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRK 373

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM-CSRR--YE 416
            G+ P+ +TY  +LVA E+K+  E  L L+ + K+ G  P+L+++  +I + C+ R   E
Sbjct: 374 KGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNVVIRLACNFREVKE 433

Query: 417 KARTLNE 423
             R  NE
Sbjct: 434 AVRLWNE 440



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 146/326 (44%), Gaps = 22/326 (6%)

Query: 68  FNVCKSQKAIKEAFRFFKLV---------PNPTL---STFNMLMSVCASSKDSEGAFQVL 115
           + VCKS   I    R F  V          NP L     F +L+   AS+   + A +VL
Sbjct: 134 YEVCKSMVKILSKMRQFGAVWGLIEEMRKENPELIEPELFVVLIRRFASANMVKKAVEVL 193

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKV-------DAMFENVKPDRVVFNALITACGQSG 168
             + + G + D  ++  L+    K+G V       + M E + P+   F +L+    + G
Sbjct: 194 DEMPKYGFEPDEYVFGCLLDALCKNGSVKDASKVFEDMREKIPPNLRYFTSLLYGWCREG 253

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +  A +VL +M      ++PD +    L+   A+AG++  A ++   + K   +     
Sbjct: 254 KLMEAKEVLVQMKEA--GLEPDIVVFTNLLSGYAHAGKMADAYDLLNDMRKRGYEPNANC 311

Query: 229 YTIAINC-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           YT+ I   C      + A  V+ +M + G   D V  +ALI      G ++  + +L + 
Sbjct: 312 YTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDM 371

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           + +G+    ++Y  ++ A    + +++ LEL E MK I   P +   N +I   C+  ++
Sbjct: 372 RKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNVVIRLACNFREV 431

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILL 373
            + + + ++M++ GL P    + I++
Sbjct: 432 KEAVRLWNEMEANGLSPGADMFVIMI 457



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/360 (22%), Positives = 153/360 (42%), Gaps = 40/360 (11%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-----KLVP 88
           R      + + +++L++M + G    + V+      +CK+  ++K+A + F     K+ P
Sbjct: 179 RFASANMVKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKN-GSVKDASKVFEDMREKIPP 237

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           N    T ++L   C   K  E A +VL  ++EAGL+                        
Sbjct: 238 NLRYFT-SLLYGWCREGKLME-AKEVLVQMKEAGLE------------------------ 271

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQV 207
              PD VVF  L++    +G +  A+D+L +M    +  +P+      L++A C    ++
Sbjct: 272 ---PDIVVFTNLLSGYAHAGKMADAYDLLNDMRKRGY--EPNANCYTVLIQALCRTEKRM 326

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A  V+  + +Y  +     YT  I+   + G  +   SV DDM KKGV+P +V    +
Sbjct: 327 DEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQI 386

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           +       + E   E++++ K  G    ++ Y+ ++    N +  ++A+ L+  M++  L
Sbjct: 387 LVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNVVIRLACNFREVKEAVRLWNEMEANGL 446

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL--CPNTITYSILLVACERKDDVEVG 385
            P       +I        L +      +M S G+   P   T   LL    R D +E+ 
Sbjct: 447 SPGADMFVIMINGFTSQGYLIEACSHFKEMVSRGIFSAPQYGTLKSLLNTLLRDDKLEMA 506


>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 882

 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 163/379 (43%), Gaps = 65/379 (17%)

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQ------ 119
            F N     + +K+  +  +  P    + +N+  S+     D+  A Q+L+ +Q      
Sbjct: 316 HFTNSGHVVEGVKDILKQLRWGPATEKALYNLNFSI-----DAYQANQILKQLQDHSVAL 370

Query: 120 --------EAGLKADCKLYTTLITTCAKS---GKVDAMFENV-----KPDRVVFNALITA 163
                   + G   D   YTT++    ++   G ++ + E +     +P+ V +N LI +
Sbjct: 371 SFFYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHS 430

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
            G++  +  A +V  +M  +    +PD +T   L+   A AG +D A  +Y+ + +  + 
Sbjct: 431 YGRANYLGEALNVFNQM--QEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLS 488

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                Y++ INC  ++G+   A  ++ +M  +G +P+ V  + LI     A   + A ++
Sbjct: 489 PDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKL 548

Query: 284 LQEAKNQGISVGIISYSSLM---GACS------------NAKNW---------------- 312
            ++ +N G     ++YS +M   G C                NW                
Sbjct: 549 YRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGK 608

Query: 313 ----QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
               +KA E Y  M    L P V T N+L++A     +LP    +L +M +LGL P+  T
Sbjct: 609 AGNVEKAWEWYHAMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSLQT 668

Query: 369 YSILLVAC-ERKDDVEVGL 386
           Y++LL  C E +   ++G 
Sbjct: 669 YTLLLSCCTEAQSPYDMGF 687



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 127/284 (44%), Gaps = 46/284 (16%)

Query: 19  ANYAHDVSEQLHSYNRLIRQG----RISECIDLLEDMERKGLLDM--------------- 59
           ANY   + E L+ +N++   G    R++ C  L++   + G LD+               
Sbjct: 434 ANY---LGEALNVFNQMQEMGCEPDRVTYCT-LIDIHAKAGFLDVAMSMYERMQEVGLSP 489

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVL 115
           D   ++   N       +  A R F ++V     P + T+N+L+++ A +++ + A ++ 
Sbjct: 490 DTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALKLY 549

Query: 116 RLVQEAGLKADCKLYTTLITT---CAKSGKVDAMF-----ENVKPDRVVFNALITACGQS 167
           R +Q AG K D   Y+ ++     C    + +A+F      N  PD  V+  LI   G++
Sbjct: 550 RDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVYGLLIDLWGKA 609

Query: 168 GAVDRAFDVL-AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           G V++A++   A + A + P  P   T  +L+ A     ++  A  + + +    +  + 
Sbjct: 610 GNVEKAWEWYHAMLRAGLLPNVP---TCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNPSL 666

Query: 227 EVYTIAINCCSQTG---DWEFACSVYDDMTKKGVIPDEVFLSAL 267
           + YT+ ++CC++     D  F C +   M   G  P   FL ++
Sbjct: 667 QTYTLLLSCCTEAQSPYDMGFCCEL---MAVSG-HPAHAFLQSM 706


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 162/361 (44%), Gaps = 21/361 (5%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +IR      R+ E I+LL+DM  KG L     Y+     +CK ++ ++      K+
Sbjct: 317 TYNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKM 376

Query: 87  VPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
                L     T+N L+ +      ++ A   L+  +E G + D   Y+ ++    K G+
Sbjct: 377 AKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGR 436

Query: 143 -------VDAMFE--NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
                  ++ M    +  PD V + A++    + G VD+A  +L  M+   H   P+ ++
Sbjct: 437 MSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHT--HGYKPNTVS 494

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+      G+   ARE+  M  +         Y++ ++   + G    AC V  +M 
Sbjct: 495 YTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVVREMV 554

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNW 312
            KG  P  V ++ L+      G+   A + ++E  N+G ++ ++++++++ G C N +  
Sbjct: 555 LKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDE-L 613

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
             AL + + M  I     V T   L+ AL    ++ +  E++  M   G+ P  +TY  +
Sbjct: 614 DAALSVLDDMYLINKHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTV 673

Query: 373 L 373
           +
Sbjct: 674 I 674



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 7/221 (3%)

Query: 199 KACANAGQVDRAREVYKMIH----KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           + CA     D  R   K  +    ++  +  P VY   +   S+T   + A  V   M +
Sbjct: 179 QVCAVLRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSKTKMCQGARRVLVLMKR 238

Query: 255 KGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           +G+    E FL  ++ ++  AG++  A ++L   +  G+   ++  ++ +     A   +
Sbjct: 239 RGIYRTPEAFLRVMVSYS-RAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLE 297

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSIL 372
           KAL   E M+ + + P V T N +I   CD  ++ + +E+L DM S G  P+ ++ Y+I+
Sbjct: 298 KALRFLERMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIM 357

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
              C+ K  VEV  ++   AKE G++ + V +  +I M ++
Sbjct: 358 GYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLIHMLTK 398



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 110/249 (44%), Gaps = 3/249 (1%)

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D +   ++++  +       AR V  ++ +  I  TPE +   +   S+ G    A  V 
Sbjct: 209 DPMVYYSMLEVLSKTKMCQGARRVLVLMKRRGIYRTPEAFLRVMVSYSRAGQLRDALKVL 268

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
             M + GV P+ +  +  ID    A ++E A   L+  +  GI   +++Y+ ++    + 
Sbjct: 269 TLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDL 328

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM-KSLGLCPNTIT 368
              ++A+EL + M S    P   +   ++  LC   ++ +  +++  M K  GL  + +T
Sbjct: 329 HRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVT 388

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVL 426
           Y+ L+    + D  +  L  L  A+E G   + V +  I+  +C   R  +A+ L   +L
Sbjct: 389 YNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEML 448

Query: 427 SFNSGRPQI 435
           S     P +
Sbjct: 449 SKGHCPPDV 457



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 93/480 (19%), Positives = 204/480 (42%), Gaps = 72/480 (15%)

Query: 70  VCKSQKAIKEAFRFF-------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
           V +SQ   + A +FF       +   +P +  +  ++ V + +K  +GA +VL L++  G
Sbjct: 183 VLRSQDDERVALKFFYWADRQWRYRHDPMV--YYSMLEVLSKTKMCQGARRVLVLMKRRG 240

Query: 123 LKADCKLYTTLITTCAKSGKV-DAM-------FENVKPDRVVFNALITACGQSGAVDRAF 174
           +    + +  ++ + +++G++ DA+          V+P+ ++ N  I    ++  +++A 
Sbjct: 241 IYRTPEAFLRVMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKAL 300

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
             L  M  +V  + P+ +T   +++   +  +V+ A E+                     
Sbjct: 301 RFLERM--QVVGIVPNVVTYNCMIRGYCDLHRVEEAIELL-------------------- 338

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGIS 293
                          DDM  KG +PD+V    ++ +     ++    +++++ AK  G+ 
Sbjct: 339 ---------------DDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLV 383

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
              ++Y++L+   +   +  +AL   +  +    +      +A++ ALC   ++ +  ++
Sbjct: 384 RDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDL 443

Query: 354 LSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           +++M S G C P+ +TY+ ++    R  +V+    LL      G  PN V +  ++ G+C
Sbjct: 444 INEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLC 503

Query: 412 --SRRYEKARTLN---EHVLSFNSGRPQI-------ENKWTSLALMVYREAIVAGTIPTV 459
              +  E    +N   E   S NS    +       E K +  A  V RE ++ G  P  
Sbjct: 504 RTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSE-ACDVVREMVLKGFFPGP 562

Query: 460 EVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEE 517
             ++ +L  L          + +E       A+   N  ++I GF + D    A S+L++
Sbjct: 563 VEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDD 622


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 178/396 (44%), Gaps = 13/396 (3%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV       N   ++G + +      +M  +G+L     Y +    +CK+Q   K     
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +V N   P   T+N ++    SS   + A   L+ +   G++ D   Y +L+    K+
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 141 GKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+      MF++     +KP+   +  L+      GA+     +L  M    + + P+H 
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPNHY 375

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
               L+ A A  G+VD+A  V+  + +  +      Y   I    ++G  E A   ++ M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             + + P  +  ++LI       K + A E++ E  ++GI +  I ++S++ +       
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            ++ +L++ M  I +KP + T + LI   C   ++ +  ++L+ M S+G+ P+ +TY+ L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +    +   +E  L+L  + +  GV P+++ +  I+
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIIL 591



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 113/477 (23%), Positives = 204/477 (42%), Gaps = 44/477 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           P L T+ +LM  C  +   +  F  L  V + G   D   +T ++   CA     DAM  
Sbjct: 89  PNLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDI 148

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            ++        P+   +N L+           A ++L  M  +     PD ++   ++  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 201 CANAGQVDRAREVYKMIHKYNIKGT-PEVYT----IAINCCSQTGDWEFACSVYDDMTKK 255
               G +D+A   Y   H+   +G  P V T    IA  C +Q  D   A  V   M K 
Sbjct: 209 FFKEGDLDKAYGTY---HEMLDRGILPNVVTYSSIIAALCKAQAMDK--AMEVLTSMVKN 263

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           GV+P+    ++++     +G+ + A   L++  + G+   +++Y+SLM          +A
Sbjct: 264 GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEA 323

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            ++++ M    LKP ++T   L+        L +   +L  M   G+ PN   +SIL+ A
Sbjct: 324 RKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICA 383

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNEHVLS------ 427
             ++  V+  +++ S+ ++ G+ P+ V +  +IG +C S R E A    E ++       
Sbjct: 384 YAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPG 443

Query: 428 ---FNS--GRPQIENKW---TSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE 479
              +NS      I +KW     L L +    I   TI    ++       ++  +  + +
Sbjct: 444 NIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFD 503

Query: 480 RLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP-CVSFKEI 532
            +V  +GV  D +  S   +LIDG+   G+ D  A  LL    S G+ P CV++  +
Sbjct: 504 LMVR-IGVKPDIITYS---TLIDGYCLAGKMD-EATKLLASMVSVGMKPDCVTYNTL 555



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/397 (21%), Positives = 174/397 (43%), Gaps = 19/397 (4%)

Query: 21  YAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           ++  V   + +YN L+    + GR +E   + + M ++GL      Y         ++ A
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY-GTLLQGYATKGA 354

Query: 77  IKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           + E      L+     +P    F++L+   A     + A  V   +++ GL  D   Y T
Sbjct: 355 LVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414

Query: 133 LITTCAKSGKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           +I    KSG+V DAM        E + P  +V+N+LI +       D+A +++ EM    
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLD-- 472

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             +  D I   +++ +    G+V  + +++ ++ +  +K     Y+  I+     G  + 
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 532

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  +   M   G+ PD V  + LI+      ++E A  + +E ++ G+S  II+Y+ ++ 
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                +    A ELY  +     +  +ST N ++  LC  +   + + +  ++    L  
Sbjct: 593 GLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
            T T++I++ A  +    +    L +    +G++P++
Sbjct: 653 ETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDV 689


>gi|296084463|emb|CBI25022.3| unnamed protein product [Vitis vinifera]
          Length = 927

 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 159/365 (43%), Gaps = 41/365 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAM 146
           PT   +  L+   A  +D E A   +R ++E G++     Y+ L+   AK   +   D  
Sbjct: 301 PTSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHW 360

Query: 147 FENVKPDRVVFNALIT-----ACGQSGAVDRAFDVLAEMNAE--VHPVD----------- 188
           F+  K      NA+I      A  Q+  + +A  ++ EM  E    P+D           
Sbjct: 361 FKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTI 420

Query: 189 --------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                               P  I+ G L+      G+V +A EV KM+    IK   + 
Sbjct: 421 IGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKT 480

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y++ IN   +  DW  A +V++D+ K G+ PD V  + +I      G ++ A   ++E +
Sbjct: 481 YSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQ 540

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +       ++  ++   + + + ++ALE+++ M+     PTV T NALI  L +  Q+ 
Sbjct: 541 KERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQME 600

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           K +E+L +M   G+ PN  TY+ ++       D        ++ K +G+  ++  ++ ++
Sbjct: 601 KAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALL 660

Query: 409 GMCSR 413
             C +
Sbjct: 661 KACCK 665



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 174/396 (43%), Gaps = 31/396 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N  I+ G++S+ +++ + ME  G+    K Y +   N     K    AF  F+ V     
Sbjct: 451 NLYIKIGKVSKALEVSKMMEVAGIKHNMKTY-SMLINGFVRLKDWANAFAVFEDVVKDGL 509

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P +  +N ++       + + A + ++ +Q+   +   + +  +I   A+SG +     
Sbjct: 510 KPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALE 569

Query: 144 --DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             D M +    P    FNALI    +   +++A ++L EM+  +  + P+  T   +M  
Sbjct: 570 IFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMS--LAGISPNEHTYTTIMHG 627

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A+ G   +A E +  +    ++     Y   +  C ++G  + A +V  +M+ + +  +
Sbjct: 628 YASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRN 687

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID     G V  A E++Q+ K +G+   I +Y+S + AC  A + Q+A +  +
Sbjct: 688 TFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQ 747

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+ + +KP + T   LI          K ++   +MKS GL P+   Y  L+ +     
Sbjct: 748 EMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTS----- 802

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
                  LLS+A     +    ++  ++G+C    E
Sbjct: 803 -------LLSRAS----VAEEYIYSGVVGICREMIE 827



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 163/379 (43%), Gaps = 50/379 (13%)

Query: 47  LLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           L+ +ME +G+     +YH     +  +   +K +    R  +    P++ ++  L+++  
Sbjct: 395 LVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYI 454

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAMFENV-----KPDRV 155
                  A +V ++++ AG+K + K Y+ LI    +        A+FE+V     KPD V
Sbjct: 455 KIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVV 514

Query: 156 VFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           ++N +I A CG                                       G +DRA    
Sbjct: 515 LYNNIIRAFCGM--------------------------------------GNMDRAIRTV 536

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           K + K   + T   +   I+  +++GD   A  ++D M   G IP     +ALI      
Sbjct: 537 KEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEK 596

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
            ++E A EIL E    GIS    +Y+++M   ++  +  KA E +  +K+  L+  V T 
Sbjct: 597 CQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTY 656

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            AL+ A C   ++   + V  +M S  +  NT  Y+IL+    R+ DV     L+ Q K+
Sbjct: 657 EALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQ 716

Query: 395 DGVIPNLVMFKCIIGMCSR 413
           +GV P++  +   I  C +
Sbjct: 717 EGVQPDIHTYTSFINACCK 735



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 97/255 (38%), Gaps = 35/255 (13%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P     G ++   A  G +  AR  ++ +    I+ T  VYT  I+  +   D E A S 
Sbjct: 266 PSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSC 325

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK-------------------- 288
              M ++G+    V  S L+         EAA    +EAK                    
Sbjct: 326 VRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQ 385

Query: 289 ---------------NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
                           +GI   I  Y ++M   +   N +K L +++ +K     P+V +
Sbjct: 386 ACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVIS 445

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
              LI       ++ K +EV   M+  G+  N  TYS+L+    R  D      +     
Sbjct: 446 YGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVV 505

Query: 394 EDGVIPNLVMFKCII 408
           +DG+ P++V++  II
Sbjct: 506 KDGLKPDVVLYNNII 520



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/315 (17%), Positives = 125/315 (39%), Gaps = 18/315 (5%)

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           + + +   ++ GD   A   ++ M  +G+ P     ++LI        +E A   +++ K
Sbjct: 271 FGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCVRKMK 330

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +GI + +++YS L+G  +   + + A   ++  K             +I A C    + 
Sbjct: 331 EEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMT 390

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI- 407
           +   ++ +M+  G+      Y  ++       + E  L++  + KE G  P+++ + C+ 
Sbjct: 391 QAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLI 450

Query: 408 -----IGMCSRRYEKARTLNEHVLSFN--------SGRPQIENKWTSLALMVYREAIVAG 454
                IG  S+  E ++ +    +  N        +G  ++++ W + A  V+ + +  G
Sbjct: 451 NLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKD-WAN-AFAVFEDVVKDG 508

Query: 455 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAF 512
             P V + + ++       N D   R V+ +              +I GF       RA 
Sbjct: 509 LKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRAL 568

Query: 513 SLLEEAASFGIVPCV 527
            + +     G +P V
Sbjct: 569 EIFDMMRWSGCIPTV 583



 Score = 47.8 bits (112), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 62/328 (18%), Positives = 117/328 (35%), Gaps = 45/328 (13%)

Query: 124 KADCKLYTTLITTCAKSGKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFD 175
           K   K +  ++T  A+ G +      FE+     ++P   V+ +LI A      ++ A  
Sbjct: 265 KPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALS 324

Query: 176 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
            + +M  E   ++   +T   L+   A     + A   +K   + +      +Y   I  
Sbjct: 325 CVRKMKEE--GIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYA 382

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
             Q  +   A ++  +M ++G+         ++D     G  E    +    K  G +  
Sbjct: 383 HCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPS 442

Query: 296 IISYSSL------MGACSNA-----------------------------KNWQKALELYE 320
           +ISY  L      +G  S A                             K+W  A  ++E
Sbjct: 443 VISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFE 502

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            +    LKP V   N +I A C    + + +  + +M+     P T T+  ++    R  
Sbjct: 503 DVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSG 562

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           D+   L +    +  G IP +  F  +I
Sbjct: 563 DMRRALEIFDMMRWSGCIPTVHTFNALI 590


>gi|147841962|emb|CAN63129.1| hypothetical protein VITISV_001456 [Vitis vinifera]
          Length = 701

 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 135/288 (46%), Gaps = 8/288 (2%)

Query: 144 DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M E  VKPD + F+ +I+    S   ++A +   +M        PD +T  A++ A  
Sbjct: 200 DEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPE--FGCHPDDVTYSAMIDAYG 257

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AG VD A ++Y        +  P  ++  I     +G+++   +VY++M   GV P+ V
Sbjct: 258 RAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLV 317

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L+D  G A +   A  I +E  N G+ +   +Y++L+ A   A+  + AL +Y+ M
Sbjct: 318 IYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAYGRARYAEDALIVYKEM 377

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDD 381
           K   L+ +V   N L+    D     +   +  DMKS G C P++ T+S L+        
Sbjct: 378 KEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGK 437

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFN 429
           V     +L+   E G  PN+ +   +I  C   Y KA   +E V +F+
Sbjct: 438 VSEAEAMLNAMLEAGFEPNIFVLTSLI-QC---YGKANRTDEVVRTFD 481



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 140/288 (48%), Gaps = 22/288 (7%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           + + C N   +D A +++  + +  +K     ++  I+C   +     A   ++ M + G
Sbjct: 185 VFRKCRN---LDXAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEFG 241

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
             PD+V  SA+ID  G AG V+ A ++   A+ +   +  +++S+L+     + N+   L
Sbjct: 242 CHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCL 301

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            +YE MK++ +KP +   N L+ A+    +  +   +  +M + GL  +  TY+ LL A 
Sbjct: 302 NVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQLSWGTYAALLRAY 361

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ 434
            R    E  L++  + KE G+  ++V++  ++ MC+     E+A  + E + S  +  P 
Sbjct: 362 GRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMP- 420

Query: 435 IENKWTSLALM-VYR--------EAIV-----AGTIPTVEVVSKVLGC 468
             + WT  +L+ +Y         EA++     AG  P + V++ ++ C
Sbjct: 421 --DSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQC 466



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 24/215 (11%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +++ LIR     G    C+++ E+M+  G+     +Y+    +     K   +A   +K 
Sbjct: 283 TFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNT-LLDAMGRAKRPWQAKNIYKE 341

Query: 87  VPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + N  L     T+  L+     ++ +E A  V + ++E GL+    LY TL+  CA  G 
Sbjct: 342 MTNNGLQLSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGY 401

Query: 143 VD---AMFENVK------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHI 192
            +   A+FE++K      PD   F++LIT    SG V  A    A +NA +    +P+  
Sbjct: 402 TEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEA---EAMLNAMLEAGFEPNIF 458

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
            + +L++    A + D     +  + + +I  TP+
Sbjct: 459 VLTSLIQCYGKANRTDEVVRTFDRLLELDI--TPD 491


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 183/410 (44%), Gaps = 56/410 (13%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---- 76
           VS  ++++N +I    R G++ +  D+ +D++  GL      Y++     CK   A    
Sbjct: 187 VSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMY 246

Query: 77  -----IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
                +KE     +   +PT  TF +L++    + ++  A +V   +++ G+ A    Y 
Sbjct: 247 HVDMLLKE---MVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYN 303

Query: 132 TLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           +LI+     GKV+   E VK                        ++ EM  E   + P+ 
Sbjct: 304 SLISGLCSEGKVE---EGVK------------------------LMEEM--EDLGLSPNE 334

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           IT G ++K     G +  A +    + + N++    +Y I I+   + G  E A +V + 
Sbjct: 335 ITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEA 394

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M KKG+ P+    + LI     +G   +A  +L E K +GI   +++Y+ L+GA      
Sbjct: 395 MAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGE 454

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            +KA++L + M  + L+P   T N +I   CD   +    E+ + M+      N +TY++
Sbjct: 455 VRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNV 514

Query: 372 LLVACERKDDVEVGLM-----LLSQAKEDGVIPNLVMFKCII-GMCSRRY 415
            +     K   ++G M     LL++  +  ++PN + ++ I  GM  + Y
Sbjct: 515 FI-----KYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGY 559



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 121/274 (44%), Gaps = 17/274 (6%)

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-C-- 201
           A+   V PD   FN +I+   + G + +A DV  ++ A    + P   T  +L+   C  
Sbjct: 182 ALRRRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKA--WGLAPSVATYNSLIDGYCKK 239

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AG +     + K + +  I  T   + + IN   +  +   A  V+++M ++G+    
Sbjct: 240 GGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASV 299

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM------GACSNAKNWQKA 315
           V  ++LI      GKVE   ++++E ++ G+S   I++  ++      G  ++A +W   
Sbjct: 300 VTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDW--- 356

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
               + M    ++P V   N LI       ++   M V   M   G+ PN  TY+ L+  
Sbjct: 357 ---IDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITG 413

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
             R  D      LL + KE G+  ++V +  +IG
Sbjct: 414 FSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIG 447



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 76/158 (48%), Gaps = 4/158 (2%)

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P    ++AL+     A +V+ A +  + A  + +S  I ++++++         +KA ++
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV---LSDMKSLGLCPNTITYSILLVA 375
            + +K+  L P+V+T N+LI   C          V   L +M   G+ P  +T+ +L+  
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
             +  +    + +  + K+ G+  ++V +  +I G+CS
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCS 311


>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 819

 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 148/326 (45%), Gaps = 14/326 (4%)

Query: 70  VCKSQKAIKEAFRFFKLVPNPTL----STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           +CK  K ++    +F+L     L    +T N L+       + E  F V + + E GL  
Sbjct: 461 LCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVL 520

Query: 126 DCKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVL 177
           D   Y TLI  C KSGK++  F        +  KPD   +N L+      G +D    VL
Sbjct: 521 DGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVL 580

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            E  A+ H V P+  T   +++   NA ++D A  ++  +    ++ +  VY I I   S
Sbjct: 581 HE--AKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIAAHS 638

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           + G++  A  + D M    + P     S++I        VE A  I +E +N+G+   + 
Sbjct: 639 KAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVF 698

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
            Y++L+G         +   + + M S  ++P   T   +I   C      +  ++L++M
Sbjct: 699 CYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEM 758

Query: 358 KSLGLCPNTITYSILLVACERKDDVE 383
            + G+ P+T+TY++L     +++++E
Sbjct: 759 IANGISPDTVTYTVLQKGYCKENELE 784



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 175/392 (44%), Gaps = 33/392 (8%)

Query: 70  VCKSQK-----AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           +CKS K      I +A     +  N +L T  ++  +C   K  E      RL  + GL 
Sbjct: 426 LCKSSKFDSALKIVKALLLRNIKVNDSLLTL-LVCGLCKCGKHLEAIDLWFRLADKKGLA 484

Query: 125 ADCKLYTTLITTCAKSGKVDAMFENVKP--------DRVVFNALITACGQSGAVDRAFDV 176
           A+      L+    + G ++ +F   K         D + +N LI  C +SG ++ AF +
Sbjct: 485 ANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKL 544

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-PEVYTIAI-- 233
             +M  +     PD  T   LMK  A+ G++D   +V +++H+    G  P +YT A+  
Sbjct: 545 KEKMMKQ--GFKPDTYTYNFLMKGLADKGKMD---DVGRVLHEAKDHGVVPNIYTYALML 599

Query: 234 --NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
              C +   D   A S+++ +    V    V  + LI     AG    AF++    ++  
Sbjct: 600 EGYCNADRIDN--AVSLFNKLVYNKVELSYVVYNILIAAHSKAGNFTEAFKLRDAMRSSN 657

Query: 292 ISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           I   I +YSS++ G C N    ++A  ++E M++  L P V    ALI   C   Q+ + 
Sbjct: 658 IHPTIFTYSSIIHGMCCNDL-VEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQI 716

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
             +L +M S  + PN ITY+I++    +  + +    LL++   +G+ P+ V +  +   
Sbjct: 717 ESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGISPDTVTYTVL--- 773

Query: 411 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
             + Y K   L E  L  ++  P  E  +T+L
Sbjct: 774 -QKGYCKENEL-EETLQGDTAVPLEEITYTTL 803



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 117/530 (22%), Positives = 225/530 (42%), Gaps = 32/530 (6%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV     + N   + G+I E + L   M   G+L     Y+     +CKS + ++EA  F
Sbjct: 240 DVYTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGR-LEEALMF 298

Query: 84  -FKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             ++V    NP+L T+ +L++     +  + A  VL  +   G   +  ++  LI   ++
Sbjct: 299 KGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSR 358

Query: 140 SGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            G +        D   + +KP+ V  N L+    ++  +++A  VL  + + V  V+ D 
Sbjct: 359 KGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNED- 417

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
                ++     + + D A ++ K +   NIK    + T+ +    + G    A  ++  
Sbjct: 418 -ACSYVLHLLCKSSKFDSALKIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDLWFR 476

Query: 252 MT-KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
           +  KKG+  +    +AL+      G +E  F + +E   +G+ +  ISY++L+  C  + 
Sbjct: 477 LADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSG 536

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
             ++A +L E M     KP   T N L+  L D  ++     VL + K  G+ PN  TY+
Sbjct: 537 KIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYA 596

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSF 428
           ++L      D ++  + L ++   + V  + V++  +I   S+   + +A  L + + S 
Sbjct: 597 LMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILIAAHSKAGNFTEAFKLRDAMRSS 656

Query: 429 NSGRPQIE-----------NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADI 477
           N   P I            N     A  ++ E    G +P V   + ++G        D 
Sbjct: 657 NI-HPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQ 715

Query: 478 RERLVENLGVSADALKRSNLCSLIDGFGEY--DPRAFSLLEEAASFGIVP 525
            E +++ +  +     +     +IDG+ +      A  LL E  + GI P
Sbjct: 716 IESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGISP 765



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 88/426 (20%), Positives = 190/426 (44%), Gaps = 25/426 (5%)

Query: 21  YAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           Y+   S     +N LI    R+G + + + + +DM  KGL      ++      C++ + 
Sbjct: 338 YSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQ- 396

Query: 77  IKEAFRFFKLVPNPTLSTFN-----MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           +++A +  + + +  LS        +L  +C SSK  + A ++++ +    +K +  L T
Sbjct: 397 MEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSK-FDSALKIVKALLLRNIKVNDSLLT 455

Query: 132 TLITTCAKSGK----VDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
            L+    K GK    +D  F     + +  +    NAL+    + G ++  F V  EM  
Sbjct: 456 LLVCGLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVE 515

Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
               +  D I+   L+  C  +G+++ A ++ + + K   K     Y   +   +  G  
Sbjct: 516 R--GLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKM 573

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           +    V  +    GV+P+    + +++   +A +++ A  +  +     + +  + Y+ L
Sbjct: 574 DDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNIL 633

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           + A S A N+ +A +L + M+S  + PT+ T +++I  +C  D + +   +  +M++ GL
Sbjct: 634 IAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGL 693

Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYEKAR 419
            PN   Y+ L+    +   ++    +L +   + + PN + +  +I G C      E  +
Sbjct: 694 MPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATK 753

Query: 420 TLNEHV 425
            LNE +
Sbjct: 754 LLNEMI 759



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 165/374 (44%), Gaps = 41/374 (10%)

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           AF  F L  +    P+L + N LMS    S +   +F+V   +   G+  D   Y T I 
Sbjct: 190 AFDTFMLFTSKGVFPSLKSCNFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAIN 249

Query: 136 TCAKSGKVD---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              K GK+D    +F       V P+ V +N LI    +SG ++ A      M    + V
Sbjct: 250 AYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVE--NKV 307

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           +P  +T G L+       + D A  V   ++         V+   I+  S+ G+ + A  
Sbjct: 308 NPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALR 367

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           V DDMT KG+ P+ V  + L+       ++E A ++L+   +  +SV   + S ++    
Sbjct: 368 VRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSYVLHLLC 427

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV---LSDMKSLGLCP 364
            +  +  AL++ + +    +K   S +  L+  LC   +  + +++   L+D K  GL  
Sbjct: 428 KSSKFDSALKIVKALLLRNIKVNDSLLTLLVCGLCKCGKHLEAIDLWFRLADKK--GLAA 485

Query: 365 NTITYSILLVA-CER----------KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC-S 412
           NT T + LL   CER          K+ VE GL+L      DG+  N ++F C    C S
Sbjct: 486 NTTTSNALLYGLCERGNMEEVFPVCKEMVERGLVL------DGISYNTLIFGC----CKS 535

Query: 413 RRYEKARTLNEHVL 426
            + E+A  L E ++
Sbjct: 536 GKIEEAFKLKEKMM 549



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 86/182 (47%), Gaps = 2/182 (1%)

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           V+D M + GV+ D    +  I+     GK++ A  +  +    G+   +++Y++L+    
Sbjct: 228 VFDAMCRGGVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLC 287

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            +   ++AL     M   K+ P++ T   L+  L   ++  +   VL +M S G  PN  
Sbjct: 288 KSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEF 347

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHV 425
            ++ L+    RK +++  L +       G+ PN V    ++ G C + + E+A  + E++
Sbjct: 348 VFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQAEQVLEYL 407

Query: 426 LS 427
           LS
Sbjct: 408 LS 409


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 153/330 (46%), Gaps = 24/330 (7%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFN 158
           ++  A Q+LR V    ++ +  +Y T+I   +K   V+  F+         + PD V ++
Sbjct: 188 ETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYS 247

Query: 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 218
           ALI      G +  A D+  +M  E   + PD  T   L+      G++ +A+ V  M+ 
Sbjct: 248 ALIRGFFIVGKLKDAIDLFNKMILE--NIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMM 305

Query: 219 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278
             +IK     +   ++   +    +   +V+  M K+G+ P+ V   +L+D      +V 
Sbjct: 306 IQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVN 365

Query: 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338
            A +I      +G++  + SY+ ++      K   KA++L+  M    + P V T N+LI
Sbjct: 366 KAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLI 425

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
             LC   ++    +++++M   G  PN ITY+ +L A            LL++ K+ G+ 
Sbjct: 426 DGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILNA------------LLTKLKDQGIQ 473

Query: 399 PNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
           PN+     +I G+C S + E AR + E +L
Sbjct: 474 PNMHTDTILIKGLCQSGKLEAARKVFEDLL 503



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 136/298 (45%), Gaps = 14/298 (4%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEN--------VKPDRVVFNALITACGQSGAVDRA 173
           G   D   Y TLI    K G+  A  +         V+ + V++N +I    +   V+ A
Sbjct: 168 GFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDA 227

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--I 231
           FD+ +EM A+   + PD +T  AL++     G++  A +++  +   NIK  P+VYT  I
Sbjct: 228 FDLYSEMVAK--RISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIK--PDVYTFNI 283

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            ++   + G  + A +V D M  + + P+    + L+D      K++    +      QG
Sbjct: 284 LVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQG 343

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           I   +++Y SLM      K   KA +++  M    +   V + N +I   C   ++ K M
Sbjct: 344 IKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAM 403

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           ++  +M    + P+ +TY+ L+    +   +     L+++  + G  PN++ +  I+ 
Sbjct: 404 KLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYNSILN 461



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 124/277 (44%), Gaps = 4/277 (1%)

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
           FE + P+ V FN LI    Q G +  AF VLA++    +  +PD IT+   +K     GQ
Sbjct: 96  FEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGY--EPDIITLNTFIKGFCLKGQ 153

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           + +A   +  +           Y   IN   + G+   A  +   +  K V  + V  + 
Sbjct: 154 IHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNT 213

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           +ID       V  AF++  E   + IS  +++YS+L+         + A++L+  M    
Sbjct: 214 VIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILEN 273

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           +KP V T N L+   C   +L K   VL  M    + PN  T++ L+    +   ++ G 
Sbjct: 274 IKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGK 333

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
            + +   + G+ PN+V +  ++ G C  ++  KA+ +
Sbjct: 334 TVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKI 370



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 113/299 (37%), Gaps = 75/299 (25%)

Query: 17  KHANYAHD---------VSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVY 63
           KH N A D         +S  + +Y+ LIR     G++ + IDL   M  + +      +
Sbjct: 222 KHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTF 281

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMS-VCASSKDSEG-------- 110
           +      CK  + +K+A     ++      P +STFN L+   C   K  EG        
Sbjct: 282 NILVDGFCKEGR-LKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMM 340

Query: 111 --------------------------AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                                     A ++   + + G+ A+   Y  +I    K  KVD
Sbjct: 341 KQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVD 400

Query: 145 -AM-------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
            AM        +++ PD V +N+LI    +SG +  AF ++ EM+    P  P+ IT  +
Sbjct: 401 KAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQP--PNIITYNS 458

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           ++ A                +    I+      TI I    Q+G  E A  V++D+  K
Sbjct: 459 ILNALLTK------------LKDQGIQPNMHTDTILIKGLCQSGKLEAARKVFEDLLVK 505


>gi|297804554|ref|XP_002870161.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315997|gb|EFH46420.1| hypothetical protein ARALYDRAFT_915114 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 702

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 178/388 (45%), Gaps = 34/388 (8%)

Query: 139 KSGKV-DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           KS K+ D M E  VKPD   F  +I+   QSG   RA +   +M++     +PD++T+ A
Sbjct: 193 KSEKLFDEMLERGVKPDNATFTTIISCARQSGVPKRAVEWFEKMSS--FGCEPDNVTLAA 250

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++ A   AG V+ A  +Y        +     ++  I     +G+++   ++Y++M   G
Sbjct: 251 MIDAYGRAGNVEMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALG 310

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V P+ V  + L+D  G A +   A  I ++  + G +    +Y++L+ A   A+    AL
Sbjct: 311 VKPNLVIYNRLLDSMGRAKRPWQAKIIHKDLISNGFTPNWSTYAALIRAYGRARYGDDAL 370

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLV- 374
            +Y  MK   L  TV   N L++   D   + +  E+  DMK+   C P++ T+S L+  
Sbjct: 371 VIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIFQDMKNCETCDPDSWTFSSLITV 430

Query: 375 -ACE-RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
            +C  R  + E  L+   Q +E G  P L +   +I  C   Y KA+ +++ V +F+   
Sbjct: 431 YSCSGRVSEAEAALL---QMREAGFEPTLFVLTSVI-QC---YGKAKQVDDVVRTFD--- 480

Query: 433 PQIENKWTSLALMVYREAIVAGTIPTV------EVVSKVLGCLQ--LPYNADIRERLVEN 484
            Q+      L L +  +    G +  V      E + K++GC++   P N    + LVE 
Sbjct: 481 -QV------LELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPQNIGQVKMLVEE 533

Query: 485 LGVSADALKRSNLCSLIDGFGEYDPRAF 512
                   K+     LID  G    +A+
Sbjct: 534 QNGEEGVFKKET-SELIDSIGSDVKKAY 560



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 111/221 (50%)

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           I     +K    +  ++++ +++  + +  +K     +T  I+C  Q+G  + A   ++ 
Sbjct: 176 ILYNVTLKVFRKSKNLEKSEKLFDEMLERGVKPDNATFTTIISCARQSGVPKRAVEWFEK 235

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M+  G  PD V L+A+ID  G AG VE A  +   A+ +   +  +++S+L+     + N
Sbjct: 236 MSSFGCEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGN 295

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           +   L +YE MK++ +KP +   N L+ ++    +  +   +  D+ S G  PN  TY+ 
Sbjct: 296 YDGCLNIYEEMKALGVKPNLVIYNRLLDSMGRAKRPWQAKIIHKDLISNGFTPNWSTYAA 355

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           L+ A  R    +  L++  + KE G+   ++++  ++ MC+
Sbjct: 356 LIRAYGRARYGDDALVIYREMKEKGLSLTVILYNTLLSMCA 396



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 151/335 (45%), Gaps = 11/335 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVD 144
           P+  +  +N+ + V   SK+ E + ++   + E G+K D   +TT+I+   +SG   +  
Sbjct: 171 PSREVILYNVTLKVFRKSKNLEKSEKLFDEMLERGVKPDNATFTTIISCARQSGVPKRAV 230

Query: 145 AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             FE +     +PD V   A+I A G++G V+ A  +      E   +D   +T   L++
Sbjct: 231 EWFEKMSSFGCEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDA--VTFSTLIR 288

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
               +G  D    +Y+ +    +K    +Y   ++   +      A  ++ D+   G  P
Sbjct: 289 IYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLLDSMGRAKRPWQAKIIHKDLISNGFTP 348

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    +ALI   G A   + A  I +E K +G+S+ +I Y++L+  C++     +A E++
Sbjct: 349 NWSTYAALIRAYGRARYGDDALVIYREMKEKGLSLTVILYNTLLSMCADIGYVDEAFEIF 408

Query: 320 EHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           + MK+ +   P   T ++LIT      ++ +    L  M+  G  P     + ++    +
Sbjct: 409 QDMKNCETCDPDSWTFSSLITVYSCSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGK 468

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
              V+  +    Q  E G+ P+     C++ + ++
Sbjct: 469 AKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQ 503



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 145/376 (38%), Gaps = 69/376 (18%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +++ LIR     G    C+++ E+M+  G+     +Y+    ++ ++++  +       L
Sbjct: 282 TFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLLDSMGRAKRPWQAKIIHKDL 341

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + N   P  ST+  L+     ++  + A  + R ++E GL     LY TL++ CA  G V
Sbjct: 342 ISNGFTPNWSTYAALIRAYGRARYGDDALVIYREMKEKGLSLTVILYNTLLSMCADIGYV 401

Query: 144 DAMF---------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           D  F         E   PD   F++LIT    SG V  A   L +M       +P    +
Sbjct: 402 DEAFEIFQDMKNCETCDPDSWTFSSLITVYSCSGRVSEAEAALLQMREA--GFEPTLFVL 459

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE----FACS--- 247
            ++++    A QVD     +  + +  I          +N  +QT   E      C    
Sbjct: 460 TSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKA 519

Query: 248 -----------VYDDMTKKGVIPDEV--------------FLSALIDFAGHAGKVEAAFE 282
                      V +   ++GV   E               +L+ LID   +  K+E A E
Sbjct: 520 KPQNIGQVKMLVEEQNGEEGVFKKETSELIDSIGSDVKKAYLNCLIDLCVNLNKLERACE 579

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT--- 339
           ILQ      I  G+ S S        A  W        H+KS+ L   ++ ++  I    
Sbjct: 580 ILQLGLEYDIYTGLQSKS--------ATQWSL------HLKSLSLGAALTALHVWINDLS 625

Query: 340 --ALCDGDQLPKTMEV 353
             AL  G++ P  + +
Sbjct: 626 EAALESGEEFPPLLGI 641



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 24/241 (9%)

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           +I Y+  +     +KN +K+ +L++ M    +KP  +T   +I+         + +E   
Sbjct: 175 VILYNVTLKVFRKSKNLEKSEKLFDEMLERGVKPDNATFTTIISCARQSGVPKRAVEWFE 234

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM----- 410
            M S G  P+ +T + ++ A  R  +VE+ L L  +A+ +    + V F  +I +     
Sbjct: 235 KMSSFGCEPDNVTLAAMIDAYGRAGNVEMALSLYDRARTEKWRIDAVTFSTLIRIYGVSG 294

Query: 411 ----CSRRYEKARTL--NEHVLSFNS-----GRPQIENKWTSLALMVYREAIVAGTIP-- 457
               C   YE+ + L    +++ +N      GR +    W   A +++++ I  G  P  
Sbjct: 295 NYDGCLNIYEEMKALGVKPNLVIYNRLLDSMGRAK--RPWQ--AKIIHKDLISNGFTPNW 350

Query: 458 -TVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLE 516
            T   + +  G  +   +A +  R ++  G+S   +  + L S+    G  D  AF + +
Sbjct: 351 STYAALIRAYGRARYGDDALVIYREMKEKGLSLTVILYNTLLSMCADIGYVD-EAFEIFQ 409

Query: 517 E 517
           +
Sbjct: 410 D 410


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/411 (22%), Positives = 184/411 (44%), Gaps = 15/411 (3%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
           DV       N   ++G + +      +M  +G+L     Y +    +CK+Q   K     
Sbjct: 198 DVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVL 257

Query: 84  FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +V N   P   T+N ++    SS   + A   L+ +   G++ D   Y +L+    K+
Sbjct: 258 TSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKN 317

Query: 141 GKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+      MF++     +KP+   +  L+      GA+     +L  M    + + P+H 
Sbjct: 318 GRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPNHY 375

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
               L+ A A  G+VD+A  V+  + +  +      Y   I    ++G  E A   ++ M
Sbjct: 376 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             + + P  +  ++LI       K + A E++ E  ++GI +  I ++S++ +       
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            ++ +L++ M  I +KP + T + LI   C   ++ +  ++L+ M S+G+ P+ +TY+ L
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTL 555

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 421
           +    +   +E  L+L  + +  GV P+++ +  I+     +RR   A+ L
Sbjct: 556 INGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKEL 606



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 115/478 (24%), Positives = 208/478 (43%), Gaps = 46/478 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
           P L T+ +L+  C  +   +  F  L  V + G + D   +T L+   CA     DAM  
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            ++        P+   +N L+           A ++L  M  +     PD ++   ++  
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 201 CANAGQVDRAREVYKMIHKYNIKGT-PEVYT----IAINCCSQTGDWEFACSVYDDMTKK 255
               G +D+A   Y   H+   +G  P V T    IA  C +Q  D   A  V   M K 
Sbjct: 209 FFKEGDLDKA---YGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDK--AMEVLTSMVKN 263

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG-ACSNAKNWQK 314
           GV+P+    ++++     +G+ + A   L++  + G+   +++Y+SLM   C N +   +
Sbjct: 264 GVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGR-CTE 322

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ++++ M    LKP ++T   L+        L +   +L  M   G+ PN   +SIL+ 
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILIC 382

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNEHVLS----- 427
           A  ++  V+  +++ S+ ++ G+ P+ V +  +IG +C S R E A    E ++      
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 428 ----FNS--GRPQIENKW---TSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR 478
               +NS      I +KW     L L +    I   TI    ++       ++  +  + 
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 479 ERLVENLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP-CVSFKEI 532
           + +V  +GV  D +  S   +LIDG+   G+ D  A  LL    S G+ P CV++  +
Sbjct: 503 DLMVR-IGVKPDIITYS---TLIDGYCLAGKMD-EATKLLASMVSVGMKPDCVTYNTL 555



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 175/400 (43%), Gaps = 19/400 (4%)

Query: 21  YAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           ++  V   + +YN L+    + GR +E   + + M ++GL      Y         ++ A
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTY-GTLLQGYATKGA 354

Query: 77  IKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           + E      L+     +P    F++L+   A     + A  V   +++ GL  D   Y T
Sbjct: 355 LVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414

Query: 133 LITTCAKSGKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           +I    KSG+V DAM        E + P  +V+N+LI +       D+A +++ EM    
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLD-- 472

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             +  D I   +++ +    G+V  + +++ ++ +  +K     Y+  I+     G  + 
Sbjct: 473 RGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDE 532

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  +   M   G+ PD V  + LI+      ++E A  + +E ++ G+S  II+Y+ ++ 
Sbjct: 533 ATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQ 592

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                +    A ELY  +     +  +ST N ++  LC  +   + + +  ++    L  
Sbjct: 593 GLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL 652

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
            T T++I++ A  +    +    L +    +G++P++  +
Sbjct: 653 ETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTY 692


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 170/388 (43%), Gaps = 15/388 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N L + G+  + ++L +DM  +G       Y      +CK  + +  A  F K+      
Sbjct: 200 NGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQ 259

Query: 90  PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDA 145
           P + T++ ++ S+C   + +E A  +   ++  G+  +   Y +LI      ++  +  A
Sbjct: 260 PDVVTYSTIIDSLCKDRRVNE-ALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASA 318

Query: 146 MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           M       N+ P+ V F+ LI    + G V  A  VL  M      V+P+ +T  +LM  
Sbjct: 319 MLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTE--MGVEPNVVTYSSLMNG 376

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            +   +V  AR+++ ++     K     Y I IN   +      A  ++++M  +G+ PD
Sbjct: 377 YSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPD 436

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + LID     G++  A ++ +     G    + +YS L+          KA  L+ 
Sbjct: 437 IVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFR 496

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+S  LKP +   N LI A+C    L +  ++ S++   GL PN   Y+ ++    ++ 
Sbjct: 497 AMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEG 556

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            ++  L      +EDG  PN   +  II
Sbjct: 557 LLDEALEAFRNMEEDGCPPNEFSYNVII 584



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 179/397 (45%), Gaps = 31/397 (7%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           +P  + FN L++A  +      A   L++   E+  + PD  T+  L+       +VD  
Sbjct: 118 RPCIIQFNKLLSAIVKMRHYHDAVISLSK-QMELAGLSPDTYTLHMLINCFFQLQRVDLG 176

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
             V   I K  ++ T   +   IN   + G +  A  ++DDM  +G  PD    + +I+ 
Sbjct: 177 FSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIING 236

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G+  AA  + ++    G    +++YS+++ +    +   +AL+++ +MK+  + P 
Sbjct: 237 LCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPN 296

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           + T N+LI  LC+  +  +   +L++M SL + PN +T+S+L+    ++ +V     +L 
Sbjct: 297 IFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLK 356

Query: 391 QAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNEHVLSFNSGRPQI-----------EN 437
              E GV PN+V +  ++   S + E  +AR L + V+     +P +           + 
Sbjct: 357 TMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFD-VMITKGCKPDVFSYNILINGYCKA 415

Query: 438 KWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADIRERLVENLGVSADALKRSN 496
           K    A  ++ E I  G  P +   + ++ G  QL        RL E   +  + L   N
Sbjct: 416 KRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLG-------RLREAHDLFKNMLTNGN 468

Query: 497 ---LCS---LIDGFGE--YDPRAFSLLEEAASFGIVP 525
              LC+   L+DGF +  Y  +AF L     S  + P
Sbjct: 469 LPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKP 505



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 151/331 (45%), Gaps = 11/331 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T+  +++      ++  A  + R + EAG + D   Y+T+I +  K  +V+   + 
Sbjct: 225 PDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDI 284

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   + P+   +N+LI           A  +L EM +    + P+ +T   L+   
Sbjct: 285 FSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMS--LNIMPNIVTFSLLINIF 342

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G V  AR V K + +  ++     Y+  +N  S   +   A  ++D M  KG  PD 
Sbjct: 343 CKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDV 402

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LI+    A ++  A ++  E  +QG++  I+SY++L+         ++A +L+++
Sbjct: 403 FSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKN 462

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M +    P + T + L+   C    L K   +   M+S  L PN + Y+IL+ A  +  +
Sbjct: 463 MLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRN 522

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           ++    L S+    G+ PN+ ++  II G+C
Sbjct: 523 LKEARKLFSELFVQGLQPNVQIYTTIINGLC 553



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/401 (21%), Positives = 164/401 (40%), Gaps = 22/401 (5%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
           +P   T +ML++     +  +  F VL  + + GL+     + TLI    K GK      
Sbjct: 154 SPDTYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVE 213

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              D +    +PD   +  +I    + G    A  +  +M        PD +T   ++ +
Sbjct: 214 LFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEA--GCQPDVVTYSTIIDS 271

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                +V+ A +++  +    I      Y   I        W  A ++ ++M    ++P+
Sbjct: 272 LCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPN 331

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  S LI+     G V  A  +L+     G+   +++YSSLM   S      +A +L++
Sbjct: 332 IVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFD 391

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M +   KP V + N LI   C   ++ +  ++ ++M   GL P+ ++Y+ L+    +  
Sbjct: 392 VMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLG 451

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY-EKA----RTLNEHVLSFNSGRPQ 434
            +     L      +G +P+L  +  ++ G C + Y  KA    R +    L  N     
Sbjct: 452 RLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYN 511

Query: 435 I------ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
           I      +++    A  ++ E  V G  P V++ + ++  L
Sbjct: 512 ILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGL 552



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 75/386 (19%), Positives = 162/386 (41%), Gaps = 60/386 (15%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-----KSQKAIKEAFRFFKLV 87
           + L +  R++E +D+   M+ KG+      Y++    +C     +   A+        ++
Sbjct: 270 DSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIM 329

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
           PN  + TF++L+++     +   A  VL+ + E G++ +   Y++L+   +   +V    
Sbjct: 330 PN--IVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEAR 387

Query: 144 ---DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALM 198
              D M  +  KPD   +N LI    ++  +  A  +  EM   +H  + PD ++   L+
Sbjct: 388 KLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEM---IHQGLTPDIVSYNTLI 444

Query: 199 KACANAGQVDRAREVYK-MIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKK 255
                 G++  A +++K M+   N+   P++  Y+I ++   + G    A  ++  M   
Sbjct: 445 DGLCQLGRLREAHDLFKNMLTNGNL---PDLCTYSILLDGFCKQGYLAKAFRLFRAMQST 501

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + P+ V  + LID                                   A   ++N ++A
Sbjct: 502 YLKPNMVMYNILID-----------------------------------AMCKSRNLKEA 526

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            +L+  +    L+P V     +I  LC    L + +E   +M+  G  PN  +Y++++  
Sbjct: 527 RKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRG 586

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNL 401
             +  D    + L+ + +E G + ++
Sbjct: 587 FLQHKDESRAVQLIGEMREKGFVADV 612


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 167/371 (45%), Gaps = 28/371 (7%)

Query: 21  YAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS--- 73
           Y H+V     +YN+L+    R+ R  +   + ++M  K        +      +C+S   
Sbjct: 3   YEHNV----FTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQL 58

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +KA K   R  ++   P  + +N L+S  + +KD   AF+ L  + +         YT +
Sbjct: 59  EKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNI 118

Query: 134 ITTCAKSGK-------VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +    K+ +       +D M +    P+   +N ++    +   +D A  +L EM   V 
Sbjct: 119 VDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEM--AVR 176

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWE 243
              PD +T  + +K      +VD AR   K + +  +  TP+V  YT  IN   ++GD +
Sbjct: 177 GYFPDVVTYNSFIKGLCKCDRVDEAR---KFLARMPV--TPDVVSYTTVINGLCKSGDLD 231

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  + D M+ +G  PD V  S+LID     G+VE A  +L      G    +++Y+SL+
Sbjct: 232 SASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLL 291

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
           GA     +  KA ++   M+     P V + NA I  LC  +++ K   V   M   G  
Sbjct: 292 GALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCT 351

Query: 364 PNTITYSILLV 374
           PN  +YS+L+V
Sbjct: 352 PNASSYSMLIV 362



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/398 (22%), Positives = 177/398 (44%), Gaps = 45/398 (11%)

Query: 26  SEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  +++YN ++     + ++ E   +LE+M  +G       Y++    +CK  + + EA 
Sbjct: 144 SPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDR-VDEAR 202

Query: 82  RFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           +F   +P  P + ++  +++    S D + A ++L  +   G   D   Y++LI    K 
Sbjct: 203 KFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKG 262

Query: 141 GKV-------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+V       D+M +   +P+ V +N+L+ A  + G + +A D+L EM  E     PD +
Sbjct: 263 GEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEM--ERRGFTPDVV 320

Query: 193 TIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +  A +     A +V +A+ V+ +M+ +     TP   + ++                  
Sbjct: 321 SYNACIDGLCKAERVKKAKAVFDRMVER---GCTPNASSYSM------------------ 359

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAK 310
                +I D +  + L+D     G+ + A  +  +  ++ I    +  Y+ ++ +    +
Sbjct: 360 -----LIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRR 414

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
              KAL++++ M   K    V T N L+  LC  D+L     +L  M   G  P+ +TY 
Sbjct: 415 QIDKALQIHKQMLE-KNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYG 473

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            L+ A  +       L L  +A + G +P++V +  +I
Sbjct: 474 TLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALI 511



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 79/372 (21%), Positives = 157/372 (42%), Gaps = 35/372 (9%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            P   TF +L+     S   E A ++L  ++E G   D  +Y  LI+  +K+      F 
Sbjct: 39  QPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFK 98

Query: 148 ---ENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              E VK    P  V +  ++    ++     A  +L EM  +     P+  T   +++ 
Sbjct: 99  FLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDK--GCSPNIYTYNVIVEG 156

Query: 201 CANAGQVDRAREVYKMIHKYNIKGT-PEVYTIAINCCSQTGDWEFACSVYDD----MTKK 255
                ++D A+   KM+ +  ++G  P+V T      +        C   D+    + + 
Sbjct: 157 LCEERKLDEAK---KMLEEMAVRGYFPDVVTY-----NSFIKGLCKCDRVDEARKFLARM 208

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            V PD V  + +I+    +G +++A  +L    N+G +  +++YSSL+         ++A
Sbjct: 209 PVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERA 268

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           + L + M  +  +P +   N+L+ AL     + K  ++L +M+  G  P+ ++Y+  +  
Sbjct: 269 MGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDG 328

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-----------GMC-SRRYEKARTLNE 423
             + + V+    +  +  E G  PN   +  +I           G+C   R+++A  L  
Sbjct: 329 LCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFS 388

Query: 424 HVLSFNSGRPQI 435
            VL      P +
Sbjct: 389 KVLDEKICEPDV 400



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 121/290 (41%), Gaps = 42/290 (14%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A +V+ +M  K   PD    + L+     + ++E A ++L   K  G       Y++L+ 
Sbjct: 26  ASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALIS 85

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
             S AK++ +A +    M      PTV T   ++  LC  ++    +++L +M+  G  P
Sbjct: 86  GYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSP 145

Query: 365 NTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTL 421
           N  TY++++   CE +   E   ML   A   G  P++V +   I G+C   R ++AR  
Sbjct: 146 NIYTYNVIVEGLCEERKLDEAKKMLEEMAVR-GYFPDVVTYNSFIKGLCKCDRVDEAR-- 202

Query: 422 NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERL 481
                 F +  P                       P V   + V+  L    + D   R+
Sbjct: 203 -----KFLARMP---------------------VTPDVVSYTTVINGLCKSGDLDSASRM 236

Query: 482 VE---NLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP 525
           ++   N G + D +  S   SLIDGF   GE + RA  LL+     G  P
Sbjct: 237 LDHMSNRGCTPDVVTYS---SLIDGFCKGGEVE-RAMGLLDSMLKLGCRP 282



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 98/211 (46%), Gaps = 16/211 (7%)

Query: 208 DRAREVYK-MIHKYNIKGTPEVYTIAI--NCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           D+A  V++ MI K      P+ +T AI      ++   E A  +   M + G +PD+   
Sbjct: 24  DKASAVFQEMIDK---SCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIY 80

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           +ALI     A     AF+ L E         +++Y++++     A+  + A++L + M+ 
Sbjct: 81  NALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRD 140

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDD 381
               P + T N ++  LC+  +L +  ++L +M   G  P+ +TY+     L  C+R D+
Sbjct: 141 KGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDE 200

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
               L  +       V P++V +  +I G+C
Sbjct: 201 ARKFLARMP------VTPDVVSYTTVINGLC 225



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 128/323 (39%), Gaps = 79/323 (24%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R G I +  D+L +MER+G       Y+A    +CK+++  K    F ++
Sbjct: 286 AYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRM 345

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           V     P  S+++ML+                          D  LYT L+    K G+ 
Sbjct: 346 VERGCTPNASSYSMLI-------------------------VDILLYTVLLDGLCKGGRF 380

Query: 144 D---AMFENV------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           D   A+F  V      +PD   +N ++ +  +   +D+A  +  +M              
Sbjct: 381 DEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQM-------------- 426

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L K C N             +  +NI     V+ + ++   +  D E   ++   M  
Sbjct: 427 --LEKNCCN-------------VVTWNIL----VHGLCVD--DRLSDAE---TMLLTMVD 462

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           +G IPD V    L+D     GK  AA E+ +EA   G    +++YS+L+    +    ++
Sbjct: 463 EGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEE 522

Query: 315 ALELYEHMKSIKLKPTVSTMNAL 337
           A  L+  +   +  P   T+  L
Sbjct: 523 AYLLFTKLVERRWVPDDKTLGLL 545


>gi|225464410|ref|XP_002269194.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
           chloroplastic [Vitis vinifera]
          Length = 929

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 159/365 (43%), Gaps = 41/365 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAM 146
           PT   +  L+   A  +D E A   +R ++E G++     Y+ L+   AK   +   D  
Sbjct: 322 PTSHVYTSLIHAYAVGRDMEEALSCVRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHW 381

Query: 147 FENVKPDRVVFNALIT-----ACGQSGAVDRAFDVLAEMNAE--VHPVD----------- 188
           F+  K      NA+I      A  Q+  + +A  ++ EM  E    P+D           
Sbjct: 382 FKEAKERHTTLNAIIYGNIIYAHCQACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTI 441

Query: 189 --------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                               P  I+ G L+      G+V +A EV KM+    IK   + 
Sbjct: 442 IGNEEKCLIVFDRLKECGFTPSVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKT 501

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y++ IN   +  DW  A +V++D+ K G+ PD V  + +I      G ++ A   ++E +
Sbjct: 502 YSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQ 561

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +       ++  ++   + + + ++ALE+++ M+     PTV T NALI  L +  Q+ 
Sbjct: 562 KERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEKCQME 621

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           K +E+L +M   G+ PN  TY+ ++       D        ++ K +G+  ++  ++ ++
Sbjct: 622 KAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTYEALL 681

Query: 409 GMCSR 413
             C +
Sbjct: 682 KACCK 686



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 174/396 (43%), Gaps = 31/396 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N  I+ G++S+ +++ + ME  G+    K Y +   N     K    AF  F+ V     
Sbjct: 472 NLYIKIGKVSKALEVSKMMEVAGIKHNMKTY-SMLINGFVRLKDWANAFAVFEDVVKDGL 530

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P +  +N ++       + + A + ++ +Q+   +   + +  +I   A+SG +     
Sbjct: 531 KPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRALE 590

Query: 144 --DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             D M +    P    FNALI    +   +++A ++L EM+  +  + P+  T   +M  
Sbjct: 591 IFDMMRWSGCIPTVHTFNALILGLVEKCQMEKAVEILDEMS--LAGISPNEHTYTTIMHG 648

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A+ G   +A E +  +    ++     Y   +  C ++G  + A +V  +M+ + +  +
Sbjct: 649 YASLGDTGKAFEYFTKLKTEGLELDVYTYEALLKACCKSGRMQSALAVTREMSSQKIPRN 708

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID     G V  A E++Q+ K +G+   I +Y+S + AC  A + Q+A +  +
Sbjct: 709 TFVYNILIDGWARRGDVWEAAELMQQMKQEGVQPDIHTYTSFINACCKAGDMQRATKTIQ 768

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+ + +KP + T   LI          K ++   +MKS GL P+   Y  L+ +     
Sbjct: 769 EMEVVGVKPNIKTYTTLIHGWARASLPEKALKCFQEMKSAGLKPDKAVYHCLMTS----- 823

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
                  LLS+A     +    ++  ++G+C    E
Sbjct: 824 -------LLSRAS----VAEEYIYSGVVGICREMIE 848



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 163/379 (43%), Gaps = 50/379 (13%)

Query: 47  LLEDMERKGLLDMDKVYHAR---FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCA 103
           L+ +ME +G+     +YH     +  +   +K +    R  +    P++ ++  L+++  
Sbjct: 416 LVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLINLYI 475

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAMFENV-----KPDRV 155
                  A +V ++++ AG+K + K Y+ LI    +        A+FE+V     KPD V
Sbjct: 476 KIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVVKDGLKPDVV 535

Query: 156 VFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           ++N +I A CG                                       G +DRA    
Sbjct: 536 LYNNIIRAFCGM--------------------------------------GNMDRAIRTV 557

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           K + K   + T   +   I+  +++GD   A  ++D M   G IP     +ALI      
Sbjct: 558 KEMQKERHRPTTRTFMPIIHGFARSGDMRRALEIFDMMRWSGCIPTVHTFNALILGLVEK 617

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
            ++E A EIL E    GIS    +Y+++M   ++  +  KA E +  +K+  L+  V T 
Sbjct: 618 CQMEKAVEILDEMSLAGISPNEHTYTTIMHGYASLGDTGKAFEYFTKLKTEGLELDVYTY 677

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            AL+ A C   ++   + V  +M S  +  NT  Y+IL+    R+ DV     L+ Q K+
Sbjct: 678 EALLKACCKSGRMQSALAVTREMSSQKIPRNTFVYNILIDGWARRGDVWEAAELMQQMKQ 737

Query: 395 DGVIPNLVMFKCIIGMCSR 413
           +GV P++  +   I  C +
Sbjct: 738 EGVQPDIHTYTSFINACCK 756



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 97/255 (38%), Gaps = 35/255 (13%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P     G ++   A  G +  AR  ++ +    I+ T  VYT  I+  +   D E A S 
Sbjct: 287 PSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSC 346

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK-------------------- 288
              M ++G+    V  S L+         EAA    +EAK                    
Sbjct: 347 VRKMKEEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQ 406

Query: 289 ---------------NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
                           +GI   I  Y ++M   +   N +K L +++ +K     P+V +
Sbjct: 407 ACNMTQAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVIS 466

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
              LI       ++ K +EV   M+  G+  N  TYS+L+    R  D      +     
Sbjct: 467 YGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVFEDVV 526

Query: 394 EDGVIPNLVMFKCII 408
           +DG+ P++V++  II
Sbjct: 527 KDGLKPDVVLYNNII 541



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 56/315 (17%), Positives = 125/315 (39%), Gaps = 18/315 (5%)

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           + + +   ++ GD   A   ++ M  +G+ P     ++LI        +E A   +++ K
Sbjct: 292 FGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALSCVRKMK 351

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +GI + +++YS L+G  +   + + A   ++  K             +I A C    + 
Sbjct: 352 EEGIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYAHCQACNMT 411

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI- 407
           +   ++ +M+  G+      Y  ++       + E  L++  + KE G  P+++ + C+ 
Sbjct: 412 QAEALVREMEEEGIDAPIDIYHTMMDGYTIIGNEEKCLIVFDRLKECGFTPSVISYGCLI 471

Query: 408 -----IGMCSRRYEKARTLNEHVLSFN--------SGRPQIENKWTSLALMVYREAIVAG 454
                IG  S+  E ++ +    +  N        +G  ++++ W + A  V+ + +  G
Sbjct: 472 NLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKD-WAN-AFAVFEDVVKDG 529

Query: 455 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAF 512
             P V + + ++       N D   R V+ +              +I GF       RA 
Sbjct: 530 LKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARSGDMRRAL 589

Query: 513 SLLEEAASFGIVPCV 527
            + +     G +P V
Sbjct: 590 EIFDMMRWSGCIPTV 604



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 63/329 (19%), Positives = 121/329 (36%), Gaps = 47/329 (14%)

Query: 124 KADCKLYTTLITTCAKSGKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFD 175
           K   K +  ++T  A+ G +      FE+     ++P   V+ +LI A      ++ A  
Sbjct: 286 KPSRKEFGLMVTYYARRGDMHHARGTFESMRARGIEPTSHVYTSLIHAYAVGRDMEEALS 345

Query: 176 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
            + +M  E   ++   +T   L+   A     + A   +K   + +      +Y   I  
Sbjct: 346 CVRKMKEE--GIEMSLVTYSILVGGFAKIADAEAADHWFKEAKERHTTLNAIIYGNIIYA 403

Query: 236 CSQTGDWEFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
             Q  +   A ++  +M ++G+  P +++   ++D     G  E    +    K  G + 
Sbjct: 404 HCQACNMTQAEALVREMEEEGIDAPIDIY-HTMMDGYTIIGNEEKCLIVFDRLKECGFTP 462

Query: 295 GIISYSSL------MGACSNA-----------------------------KNWQKALELY 319
            +ISY  L      +G  S A                             K+W  A  ++
Sbjct: 463 SVISYGCLINLYIKIGKVSKALEVSKMMEVAGIKHNMKTYSMLINGFVRLKDWANAFAVF 522

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E +    LKP V   N +I A C    + + +  + +M+     P T T+  ++    R 
Sbjct: 523 EDVVKDGLKPDVVLYNNIIRAFCGMGNMDRAIRTVKEMQKERHRPTTRTFMPIIHGFARS 582

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            D+   L +    +  G IP +  F  +I
Sbjct: 583 GDMRRALEIFDMMRWSGCIPTVHTFNALI 611


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 143/327 (43%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P+L TFN ++++       + A  ++  +       +   YT+LI    ++  +D   AM
Sbjct: 200 PSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAM 259

Query: 147 FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F+ +      P+ V ++ LI      G ++ A D+L EM  +   ++P   T    + + 
Sbjct: 260 FDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQK--GIEPTVYTYTIPLVSL 317

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            +AG    A E+   + K       + +T  I+  S+ G +E A  +Y  M   G++P  
Sbjct: 318 CDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTT 377

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  +ALI+     G+ E AF I +   + G      +Y+ ++       + QKA+ +++ 
Sbjct: 378 VTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDK 437

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M      P V T N LI   C    L   M +L  MK  GL P+  TY+ L+    R   
Sbjct: 438 MLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGK 497

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +E    L     E G+ PN V +  II
Sbjct: 498 LEHATSLFYGMMEHGISPNHVTYTAII 524



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 182/425 (42%), Gaps = 23/425 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L R G+    I L   M   GL+     Y+A    +C   +  + AF  FK + +    P
Sbjct: 352 LSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGR-FETAFTIFKWMLSHGSLP 410

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
           +  T+N ++       D + A  +   + +AG   +   Y TLI    K G ++      
Sbjct: 411 STQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLL 470

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  +KPD   +  LI+   + G ++ A  +   M    H + P+H+T  A++    
Sbjct: 471 EIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMME--HGISPNHVTYTAIIDGYF 528

Query: 203 NAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           N  +VD A  ++ KM+   N+  + + Y + I+  S+T     A +    M K+G++P+ 
Sbjct: 529 NLAKVDDALALFWKMVESGNLPSS-QTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNV 587

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKAL-ELY 319
           +  ++ ID     G+   AF+I  E + +     + +YSSL+ G C   +     +  L 
Sbjct: 588 ITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLL 647

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             +     +P V T   L+  LC   +  +  +++  M+  GL P+   Y  LL+   + 
Sbjct: 648 ARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKN 707

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY-EKARTLNEHVLSFNSGRPQIEN 437
             VE  L +       G   +L  +K +I  +C   + E+A+ + + +L  +    ++  
Sbjct: 708 LKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEV-- 765

Query: 438 KWTSL 442
            WT L
Sbjct: 766 AWTVL 770



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 166/401 (41%), Gaps = 20/401 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFKLVPN 89
           N L  +GR+ E +D+LE+M +KG+      Y     ++C    S +A++   +  K    
Sbjct: 280 NGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCV 339

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P + TF  L+S  +     E A  +   +   GL      Y  LI      G+ +  F  
Sbjct: 340 PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTI 399

Query: 150 VK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            K        P    +N +I      G + +A  +  +M        P+ IT   L+   
Sbjct: 400 FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKA--GSSPNVITYNTLIYGY 457

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G ++ A  + +++    +K     YT  I+  S+ G  E A S++  M + G+ P+ 
Sbjct: 458 CKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNH 517

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  +A+ID   +  KV+ A  +  +    G      +Y+ ++   S   +  +A      
Sbjct: 518 VTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGK 577

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CE--R 378
           M    L P V T  + I  LC   +     ++  +M+     PN  TYS L+   C+  R
Sbjct: 578 MVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGR 637

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYE 416
            +D E+   LL++    G  PN+  +  ++ G+C   R YE
Sbjct: 638 AEDAEM-YNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYE 677



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 101/482 (20%), Positives = 202/482 (41%), Gaps = 47/482 (9%)

Query: 7   NMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR 66
           ++L+F +   +   + HD+S  +   NRL+R  R+    D                 H R
Sbjct: 93  SVLRFFFWISRRKFFKHDMSCFVSMLNRLVRD-RLFAPAD-----------------HVR 134

Query: 67  FFNV--CKSQKAIKEAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
              +  C+++  +K   +F   + +      TL +F  L+         + A  +   + 
Sbjct: 135 ILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKML 194

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDA-------MFE-NVKPDRVVFNALITACGQSGAVD 171
            +G++     + T+I    K G+V         +F  +  P+   + +LI    ++  +D
Sbjct: 195 NSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLD 254

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
            AF +   M  +    DP+ +T   L+    + G+++ A ++ + + +  I+ T   YTI
Sbjct: 255 LAFAMFDRMVKD--GCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTI 312

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            +      G    A  +   M K+G +P+    +ALI      GK E A  +  +    G
Sbjct: 313 PLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADG 372

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           +    ++Y++L+        ++ A  +++ M S    P+  T N +I   C    + K M
Sbjct: 373 LVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAM 432

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
            +   M   G  PN ITY+ L+    ++ ++   + LL   K +G+ P+   +  +I   
Sbjct: 433 VIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF 492

Query: 412 SR--RYEKARTL----NEHVLSFNS-GRPQIENKWTSL-----ALMVYREAIVAGTIPTV 459
           SR  + E A +L     EH +S N      I + + +L     AL ++ + + +G +P+ 
Sbjct: 493 SRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSS 552

Query: 460 EV 461
           + 
Sbjct: 553 QT 554



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/392 (20%), Positives = 166/392 (42%), Gaps = 16/392 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN-- 89
           N L ++GR+ E   ++  + R         Y +     C++   +  AF  F ++V +  
Sbjct: 210 NILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHN-LDLAFAMFDRMVKDGC 268

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT-LITTC---AKSGKVD 144
            P   T++ L++   S    E A  +L  + + G++     YT  L++ C     S  V+
Sbjct: 269 DPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVE 328

Query: 145 AMFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            + +  K    P+   F ALI+   + G  + A  +  +M A+   + P  +T  AL+  
Sbjct: 329 LLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLAD--GLVPTTVTYNALINQ 386

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G+ + A  ++K +  +    + + Y   I C    GD + A  ++D M K G  P+
Sbjct: 387 LCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPN 446

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  + LI      G +  A  +L+  K  G+     +Y+ L+   S     + A  L+ 
Sbjct: 447 VITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFY 506

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    + P   T  A+I    +  ++   + +   M   G  P++ TY++++    + +
Sbjct: 507 GMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTN 566

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            +        +  + G++PN++ +   I G+C
Sbjct: 567 SISEAENFCGKMVKQGLLPNVITYTSFIDGLC 598


>gi|414868449|tpg|DAA47006.1| TPA: hypothetical protein ZEAMMB73_127498 [Zea mays]
          Length = 870

 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 102/451 (22%), Positives = 174/451 (38%), Gaps = 26/451 (5%)

Query: 4   GGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVY 63
           G  ++ +  +  G   +Y + V       +   R G  +E + +LE M+  GL      Y
Sbjct: 223 GRPDLARRAFDTGIAGSYGNTVFAHSALISAYARSGLATEAMGVLESMKGAGLRPTTVSY 282

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
           +A      K    ++    +F+ +      P   TFN L++ C+ +   E A  V   + 
Sbjct: 283 NAVIDACGKGGVDLRFTLGYFRQMLQDGLCPDRKTFNSLLAACSRAGHLEDARTVFDEMI 342

Query: 120 EAGLKADCKLYTTLITTCAKSGK--------VDAMFENVKPDRVVFNALITACGQSGAVD 171
             G   D   Y T +    K G         +D    N KP+ V ++ L+    +    D
Sbjct: 343 HLGSGRDIYTYNTFVDAICKCGNMGLALQVVLDMEANNAKPNVVTYSTLMDGFSKLEKYD 402

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
            A  +  +M +    +  D +    L+      G+ D    V + + K  I+     Y  
Sbjct: 403 EALKLREKMKS--LRIQLDRVCYNTLLAIYVKTGKYDEIATVCEEMEKLGIEKDTVTYNS 460

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            IN   + G  +    +  DM  +GV P  +  S LID    AG    AF +  + K  G
Sbjct: 461 LINGYGKQGRLDMVAFLVQDMRAQGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESG 520

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           +   ++ +SS +   +     + AL L + M  + +KP V T N +I A        +  
Sbjct: 521 LKADVVLFSSFIDTLAKNGLVECALSLLDEMMKMGIKPNVVTYNTIIDAFGKSKIFTEED 580

Query: 352 EVLSDMKSLGLCPNTIT----------YSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
             + DM  +G+    +            S   V   R  ++   L L  +  + GV PN+
Sbjct: 581 SDIGDMGIVGVYGGQVVRVTNPVIRGGRSATDVRMRRSQELFFILELFQKMVQQGVRPNV 640

Query: 402 VMFKCIIGMCSR--RYEKARTLNEHVLSFNS 430
           V F  I+  CSR   +E A  L E +  F++
Sbjct: 641 VTFSAILNACSRCNSFEDAALLLEQLRLFDN 671


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 145/326 (44%), Gaps = 23/326 (7%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMSVCASSKDSEGAFQVLR 116
           F+ C+         ++FKLV              +L  FN+LM       D   A  V  
Sbjct: 107 FDTCRKVLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 166

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG 168
            + + GL+       TL+    + G +D  F          V+PD   ++ LI    +  
Sbjct: 167 AITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKES 226

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +D A +   EM   V  + P+ +T   L+      G+VD A+E+YK +   ++      
Sbjct: 227 KMDDANEXFDEM--LVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLIT 284

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   I    + GD + A  + DDM+ KG+ PD++  + LIB     G +++AFE  +   
Sbjct: 285 YNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMI 344

Query: 289 NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
            + I +  + Y++L+ G C   ++   A ++   M S++LKP   T   +I   C    +
Sbjct: 345 QENIRLDDVVYTALISGLCQEGRS-VDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDV 403

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILL 373
            K  ++L +M+  G  P+ +TY++L+
Sbjct: 404 WKGSKLLKEMQRDGHAPSVVTYNVLM 429



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 132/343 (38%), Gaps = 24/343 (6%)

Query: 81  FRFFKLVPNPTLSTF--------NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           F FF  + +P  STF         M+  +C     SE    +  +V   G  +   ++  
Sbjct: 1   FSFFTWLSSPANSTFRHTLHSYCTMIHFLCTHQMFSEAKSLIQVVVSRKGKGSASXVFAA 60

Query: 133 LITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDV--LAEMNAEVHPVDPD 190
           ++ T              + D  VF+ LITA  +SG +  A +   L   +    P D  
Sbjct: 61  ILETKGTQ----------RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTC 110

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
              +  LMK              Y+ I +     +   + I ++   + GD   A SV+D
Sbjct: 111 RKVLEYLMKL----KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 166

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            +TK G+ P  V  + L++     G ++  F +       G+   + +YS L+       
Sbjct: 167 AITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKES 226

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
               A E ++ M    L P   T   LI   C   ++    E+   M S  L P+ ITY+
Sbjct: 227 KMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYN 286

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            L+    +K D++    L+      G+ P+ + +  +I  C +
Sbjct: 287 TLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCK 329



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 98/251 (39%), Gaps = 19/251 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------L 86
           N  IR G + E   L   M   G+      Y      +CK  K + +A   F       L
Sbjct: 185 NGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESK-MDDANEXFDEMLVKGL 243

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--- 143
           VPN    TF  L+     +   + A ++ + +    L  D   Y TLI    K G +   
Sbjct: 244 VPNGV--TFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQA 301

Query: 144 -----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                D   + +KPD++ +  LI  C + G +D AF+    M  E   +  D +   AL+
Sbjct: 302 HDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQE--NIRLDDVVYTALI 359

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                 G+   A ++ + +    +K     YT+ IN   + GD      +  +M + G  
Sbjct: 360 SGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHA 419

Query: 259 PDEVFLSALID 269
           P  V  + L++
Sbjct: 420 PSVVTYNVLMN 430



 Score = 42.7 bits (99), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 46/184 (25%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +YN LI    ++G + +  DL++DM  KGL                            
Sbjct: 282 LITYNTLIYGLCKKGDLKQAHDLIDDMSMKGL---------------------------- 313

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-V 143
                P   T+  L+  C    D + AF+  + + +  ++ D  +YT LI+   + G+ V
Sbjct: 314 ----KPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSV 369

Query: 144 DA-------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           DA       +   +KPD   +  +I    + G V +   +L EM  + H   P  +T   
Sbjct: 370 DAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHA--PSVVTYNV 427

Query: 197 LMKA 200
           LM  
Sbjct: 428 LMNG 431


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 173/371 (46%), Gaps = 31/371 (8%)

Query: 113 QVLRLVQEA---GLKADCKLYTTLITTCAKSGK-------VDAMF-ENVKPDRVVFNALI 161
           Q L  +QEA   G + D   Y TL+    K G        VDAM    + PD   +N+LI
Sbjct: 291 QALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLI 350

Query: 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
           +   + G ++ A  +L +M +      P+ +T  A++ +     +VD A E+ +++    
Sbjct: 351 SGLCKLGEIEEAVKILDQMVS--RDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKG 408

Query: 222 IKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
           I   P+V T    I     + + + A  ++++M  KG  PDE   + LID    + K+E 
Sbjct: 409 I--LPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEE 466

Query: 280 AFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338
           A  +L+E +  G +  ++ Y++L+ G C N K  ++A E+++ M+   +     T N LI
Sbjct: 467 ALNLLKEMELNGCARNVVIYNTLIDGFCKN-KRIEEAEEIFDEMELQGVSRDSVTYNTLI 525

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
             LC   ++    +++  M   GL P+  TY+ LL    +  D++    ++      G  
Sbjct: 526 DGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCN 585

Query: 399 PNLVMFKCII-GMC-------SRRYEKARTLNEHVLSFNSGRPQIENKW----TSLALMV 446
           P++V +  +I G+C       + R  ++  +   VL+ ++  P I+  +    T  A+ +
Sbjct: 586 PDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRL 645

Query: 447 YREAIVAGTIP 457
           +RE +     P
Sbjct: 646 FREMLDKSEPP 656



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 172/394 (43%), Gaps = 29/394 (7%)

Query: 13  YPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           Y  G + + A  + EQ+  Y           C D+  ++   G     ++  A  F    
Sbjct: 248 YIEGGNLDGALRIKEQMVEYG--------CPCTDVTVNVLINGFCKQGRIDQALSF---- 295

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            Q+A+ E FR       P   T+N L++       ++ A +V+  +   GL  D   Y +
Sbjct: 296 IQEAVSEGFR-------PDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNS 348

Query: 133 LITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           LI+   K G+++   +        +  P+ V +NA+I++  +   VD A ++   + ++ 
Sbjct: 349 LISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSK- 407

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
             + PD  T  +L++    +     A ++++ +     +     Y + I+    +   E 
Sbjct: 408 -GILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEE 466

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A ++  +M   G   + V  + LID      ++E A EI  E + QG+S   ++Y++L+ 
Sbjct: 467 ALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLID 526

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
               +K  + A +L + M    L+P   T N+L+T  C    + K  +++  M S G  P
Sbjct: 527 GLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNP 586

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
           + +TY+ L+    +   V+V   LL   +  G++
Sbjct: 587 DIVTYATLISGLCKAGRVQVASRLLRSIQMKGMV 620



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 137/312 (43%), Gaps = 12/312 (3%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVD 171
           E  +K D + Y  L+     + K+          +   ++ D   FN LI A  ++  V 
Sbjct: 161 EYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVR 220

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
            A  ++ EM +  + + PD  T   +M+     G +D A  + + + +Y    T     +
Sbjct: 221 PAILMMEEMPS--YGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNV 278

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            IN   + G  + A S   +   +G  PD+   + L++     G  + A E++      G
Sbjct: 279 LINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGG 338

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           +   I +Y+SL+         ++A+++ + M S    P   T NA+I++LC  +++ +  
Sbjct: 339 LDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEAT 398

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
           E+   + S G+ P+  T++ L+       + +  + L  + K  G  P+   +  +I  +
Sbjct: 399 EIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSL 458

Query: 411 C-SRRYEKARTL 421
           C SR+ E+A  L
Sbjct: 459 CSSRKLEEALNL 470



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/352 (22%), Positives = 151/352 (42%), Gaps = 28/352 (7%)

Query: 18  HANYAHDVSE---------QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH 64
           HA +A +V +          +++YN LI    + G I E + +L+ M  +        Y+
Sbjct: 323 HAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYN 382

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQE 120
           A   ++CK  + + EA    +L+ +    P + TFN L+     S + + A  +   ++ 
Sbjct: 383 AIISSLCKENR-VDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKG 441

Query: 121 AGLKADCKLYTTLITTCAKSGKVDAMFENVKP--------DRVVFNALITACGQSGAVDR 172
            G + D   Y  LI +   S K++     +K         + V++N LI    ++  ++ 
Sbjct: 442 KGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEE 501

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
           A ++  EM  E+  V  D +T   L+     + +V+ A ++   +    ++     Y   
Sbjct: 502 AEEIFDEM--ELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSL 559

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           +    +TGD + A  +   MT  G  PD V  + LI     AG+V+ A  +L+  + +G+
Sbjct: 560 LTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGM 619

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
            +   +Y+ ++ A        +A+ L+  M      P   T   +   LC+G
Sbjct: 620 VLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNG 671



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 83/392 (21%), Positives = 169/392 (43%), Gaps = 32/392 (8%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--PTLSTFNMLMSVCAS 104
           L+E + R+     D+V   R FN    Q             PN  P+ S +  ++     
Sbjct: 67  LIETLRRQ----TDEVAALRVFNWASKQ-------------PNFVPSSSVYEEILRKLGK 109

Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------SGKVDAMFEN--VKPDRV 155
           +   E   +VL  ++ +G + D  ++   + +  K        G V  M +   +KPD  
Sbjct: 110 AGSFEYMRRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTR 169

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
            +N L+     +  +       + M      +  D  T   L+KA   A QV  A  + +
Sbjct: 170 FYNVLLNVLVDANKLKLVESAHSSMVR--RRIRHDVSTFNILIKALCKAHQVRPAILMME 227

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            +  Y +      +T  +    + G+ + A  + + M + G    +V ++ LI+     G
Sbjct: 228 EMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQG 287

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           +++ A   +QEA ++G      +Y++L+       + + A+E+ + M    L P + T N
Sbjct: 288 RIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYN 347

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
           +LI+ LC   ++ + +++L  M S    PN +TY+ ++ +  +++ V+    +       
Sbjct: 348 SLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSK 407

Query: 396 GVIPNLVMFKCII-GMC-SRRYEKARTLNEHV 425
           G++P++  F  +I G+C S  ++ A  L E +
Sbjct: 408 GILPDVCTFNSLIQGLCLSSNHKSAMDLFEEM 439


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 112/517 (21%), Positives = 212/517 (41%), Gaps = 56/517 (10%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVP-NPTLST 94
           G+  +   L+++M RKG +     Y      +C + K +++AF  F   K+V   P + T
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATK-VEKAFLLFQEMKMVGVTPDVYT 325

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFENV- 150
           + +L+     +   E A  +   ++  G       YT LI    K+ +V   + +F  + 
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 385

Query: 151 ----KPDRVVFNALITACGQSGAVDRAFDVLAEMNA--------------EVHPVDPDHI 192
               +P+ V + AL+    ++G + +AF+V A++                + H + P+ +
Sbjct: 386 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 445

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T GAL+     A +VD A E+   +     +    VY   I+   + G  + A  V+  M
Sbjct: 446 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 505

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
           TK G +P     ++LID     G+++ A ++L +      +  +++Y++++         
Sbjct: 506 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 565

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +KAL+L   M+     P V T  ALI  L    ++  ++++ + M   G  PN +TY +L
Sbjct: 566 EKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 625

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
           +        ++   +LL + K+      L  ++C I   S+ +  +  + E + S+    
Sbjct: 626 INHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESY---- 681

Query: 433 PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADAL 492
                                GT+P   V   ++ C       +I   L + +     ++
Sbjct: 682 ---------------------GTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSV 720

Query: 493 KRSN--LCSLIDG--FGEYDPRAFSLLEEAASFGIVP 525
           K  N    SLI           AF L  E    G VP
Sbjct: 721 KTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVP 757



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 10/235 (4%)

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT----IGAL--MK 199
           M E   P+  +FN+L+ +         A+ +L  M     P  P ++     IG++   +
Sbjct: 169 MTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCP--PGYVVYNIFIGSICGQE 226

Query: 200 ACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              +   +D A ++Y +M+    +     V   A  C    G ++ A  +  +M +KG +
Sbjct: 227 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFA-RCLCGVGKFDKAFQLIKEMMRKGFV 285

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD    S +I F  HA KVE AF + QE K  G++  + +Y+ L+ +   A   ++A  L
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 345

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +E M+S+   PTV T  ALI A     Q+P+  ++   M   G  PN +TY  L+
Sbjct: 346 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 400



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/414 (21%), Positives = 150/414 (36%), Gaps = 96/414 (23%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +PT+ T+  L+     +K    A  +   + +AG + +   Y  L+    K+G +   FE
Sbjct: 355 SPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFE 414

Query: 149 ------------------------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
                                    + P+ V + AL+    ++  VD A ++L  M +  
Sbjct: 415 VYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS- 473

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
              +P+HI   AL+     AG++D A+EV+  + K     +   YT  I+   + G  + 
Sbjct: 474 -GCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDL 532

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  V   M K    P+ V  +A+ID     G+ E A ++L   + +G S  +++Y++L+ 
Sbjct: 533 AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALID 592

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK--------------- 349
               A     +L+L+  M      P   T   LI  LC    L K               
Sbjct: 593 GLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPK 652

Query: 350 ------------------TMEVLSDMKSLGLCPNTITYSILL------------------ 373
                             ++ +L +M+S G  P    Y +L+                  
Sbjct: 653 YLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKE 712

Query: 374 ---VACERKDD----------------VEVGLMLLSQAKEDGVIPNLVMFKCII 408
              V    K D                VE    L S+    G +P L +F C+I
Sbjct: 713 MMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLI 766



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 162/412 (39%), Gaps = 41/412 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L ++GR ++ +D++E  + K    +D V      +         EA  F  ++  N   P
Sbjct: 85  LCKEGRWADALDMIEREDFK----LDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIP 140

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            + T+  L+S     K      +++ ++   G   +  L+ +L+ +          ++  
Sbjct: 141 NVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLL 200

Query: 149 ------NVKPDRVVFNALI-TACGQS-----GAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                    P  VV+N  I + CGQ        +D A  +  EM A    ++   + +  
Sbjct: 201 NRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLN--KVNVAN 258

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
             +     G+ D+A ++ K + +         Y+  I         E A  ++ +M   G
Sbjct: 259 FARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVG 318

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V PD    + LID    AG +E A  + +E ++ G S  +++Y++L+ A   AK   +A 
Sbjct: 319 VTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAN 378

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--------------- 361
           +++  M     +P   T  AL+  LC    + K  EV + +                   
Sbjct: 379 DIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRH 438

Query: 362 -LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            L PN +TY  L+    +   V+    LL      G  PN +++  +I G C
Sbjct: 439 TLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFC 490



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/369 (20%), Positives = 146/369 (39%), Gaps = 49/369 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAM-- 146
           P+  T+N L+ V +S+   +  F+V + + E+G   D            K G+  DA+  
Sbjct: 38  PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDM 97

Query: 147 --FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
              E+ K D V+   +I+   ++   D A   L  M    +   P+ +T   L+      
Sbjct: 98  IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRC--NSCIPNVVTYRTLLSGFLKK 155

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD---- 260
            Q+   + +  M+        P ++   ++      D+ +A  + + MT  G  P     
Sbjct: 156 KQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVY 215

Query: 261 EVFLSA-----------LIDFAGH--------------------------AGKVEAAFEI 283
            +F+ +           L+D A                             GK + AF++
Sbjct: 216 NIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQL 275

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           ++E   +G      +YS ++    +A   +KA  L++ MK + + P V T   LI + C 
Sbjct: 276 IKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCK 335

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
              + +   +  +M+S+G  P  +TY+ L+ A  +   V     +  +  + G  PN V 
Sbjct: 336 AGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVT 395

Query: 404 FKCII-GMC 411
           +  ++ G+C
Sbjct: 396 YGALVDGLC 404



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 151/367 (41%), Gaps = 32/367 (8%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--A 76
           H ++  + +Y  L+    +  ++    +LL+ M   G      VY A     CK+ K  +
Sbjct: 438 HTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDS 497

Query: 77  IKEAF-RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            +E F +  K    P++ T+  L+         + A +VL  + +     +   YT +I 
Sbjct: 498 AQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMID 557

Query: 136 TCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              + G+ +   +           P+ V + ALI   G++G +D + D+  +M+ +    
Sbjct: 558 GLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRK--GC 615

Query: 188 DPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
            P+++T   L+     AG +D+AR +  +M   Y  K     Y     C  Q     F  
Sbjct: 616 SPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPK-----YLQGYRCAIQGFSKSFIA 670

Query: 247 S--VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--YSSL 302
           S  + ++M   G +P       LID    AG++E A E+ +E      SV   +  Y+SL
Sbjct: 671 SLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASL 730

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           + A   A   ++A  LY  M      P +S    LI  L +  +  + +++       G+
Sbjct: 731 IQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL-----CYGI 785

Query: 363 CPNTITY 369
           C   + +
Sbjct: 786 CHEGVNW 792



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 136/380 (35%), Gaps = 77/380 (20%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           +P +V +NAL+     +G VD  F V  EM+     +  D  T+G    A    G   R 
Sbjct: 37  RPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCM--DRFTVGCFAHALCKEG---RW 91

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            +   MI + + K    + T  I+   +   ++ A S    M     IP+ V    L+  
Sbjct: 92  ADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLL-- 149

Query: 271 AGHAGKVEAAF--EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +G   K +  +   I+     +G +     ++SL+ +  N K++  A +L   M +    
Sbjct: 150 SGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCP 209

Query: 329 PTVSTMNALITALCDGDQLP---------------------------------------- 348
           P     N  I ++C  ++LP                                        
Sbjct: 210 PGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKF 269

Query: 349 -KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            K  +++ +M   G  P+T TYS ++        VE   +L  + K  GV P++  +  +
Sbjct: 270 DKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTIL 329

Query: 408 IGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTV----EVVS 463
           I                  SF       + +W      ++ E    G  PTV     ++ 
Sbjct: 330 ID-----------------SFCKAGLIEQAQW------LFEEMRSVGCSPTVVTYTALIH 366

Query: 464 KVLGCLQLPYNADIRERLVE 483
             L   Q+P   DI  R+V+
Sbjct: 367 AYLKAKQVPQANDIFHRMVD 386



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 129/325 (39%), Gaps = 40/325 (12%)

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
            C    GD E      D +   G  P +V  +AL+     AG+V+  F + +E    G  
Sbjct: 19  TCSHAAGDSE------DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFC 72

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
           +   +      A      W  AL++ E  +  KL   + T   +I+ L +     + M  
Sbjct: 73  MDRFTVGCFAHALCKEGRWADALDMIER-EDFKLDTVLCT--HMISGLMEASYFDEAMSF 129

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
           L  M+     PN +TY  LL    +K  +     +++    +G  PN  +F  ++   C+
Sbjct: 130 LHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCN 189

Query: 413 RR-YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 471
            + Y  A  L   + +   G P           +VY   I  G+I   E        L  
Sbjct: 190 EKDYAYAYKLLNRMTT--CGCPP--------GYVVYN--IFIGSICGQEK-------LPS 230

Query: 472 PYNADIRERLVENLGVSADALKRSNLCSL---IDGFGEYDPRAFSLLEEAASFGIVPCVS 528
           P   D+ E++   +  +   L + N+ +    + G G++D +AF L++E    G VP  S
Sbjct: 231 PDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFD-KAFQLIKEMMRKGFVPDTS 289

Query: 529 F--KEIPVVVDARKLEIHTAKVYLL 551
              K I  +  A K+E    K +LL
Sbjct: 290 TYSKVITFLCHATKVE----KAFLL 310


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 143/327 (43%), Gaps = 10/327 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P+L TFN ++++       + A  ++  +       +   YT+LI    ++  +D   AM
Sbjct: 200 PSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAM 259

Query: 147 FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F+ +      P+ V ++ LI      G ++ A D+L EM  +   ++P   T    + + 
Sbjct: 260 FDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQK--GIEPTVYTYTIPLVSL 317

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            +AG    A E+   + K       + +T  I+  S+ G +E A  +Y  M   G++P  
Sbjct: 318 CDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTT 377

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  +ALI+     G+ E AF I +   + G      +Y+ ++       + QKA+ +++ 
Sbjct: 378 VTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDK 437

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M      P V T N LI   C    L   M +L  MK  GL P+  TY+ L+    R   
Sbjct: 438 MLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGK 497

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +E    L     E G+ PN V +  II
Sbjct: 498 LEHATSLFYGMMEHGISPNHVTYTAII 524



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 182/425 (42%), Gaps = 23/425 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L R G+    I L   M   GL+     Y+A    +C   +  + AF  FK + +    P
Sbjct: 352 LSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGR-FETAFTIFKWMLSHGSLP 410

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
           +  T+N ++       D + A  +   + +AG   +   Y TLI    K G ++      
Sbjct: 411 STQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLL 470

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  +KPD   +  LI+   + G ++ A  +   M    H + P+H+T  A++    
Sbjct: 471 EIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMME--HGISPNHVTYTAIIDGYF 528

Query: 203 NAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           N  +VD A  ++ KM+   N+  + + Y + I+  S+T     A +    M K+G++P+ 
Sbjct: 529 NLAKVDDALALFWKMVESGNLPSS-QTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNV 587

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKAL-ELY 319
           +  ++ ID     G+   AF+I  E + +     + +YSSL+ G C   +     +  L 
Sbjct: 588 ITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLL 647

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             +     +P V T   L+  LC   +  +  +++  M+  GL P+   Y  LL+   + 
Sbjct: 648 ARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKN 707

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY-EKARTLNEHVLSFNSGRPQIEN 437
             VE  L +       G   +L  +K +I  +C   + E+A+ + + +L  +    ++  
Sbjct: 708 LKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEV-- 765

Query: 438 KWTSL 442
            WT L
Sbjct: 766 VWTVL 770



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 166/401 (41%), Gaps = 20/401 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFKLVPN 89
           N L  +GR+ E +D+LE+M +KG+      Y     ++C    S +A++   +  K    
Sbjct: 280 NGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCV 339

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P + TF  L+S  +     E A  +   +   GL      Y  LI      G+ +  F  
Sbjct: 340 PNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTI 399

Query: 150 VK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            K        P    +N +I      G + +A  +  +M        P+ IT   L+   
Sbjct: 400 FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKA--GSSPNVITYNTLIYGY 457

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G ++ A  + +++    +K     YT  I+  S+ G  E A S++  M + G+ P+ 
Sbjct: 458 CKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNH 517

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  +A+ID   +  KV+ A  +  +    G      +Y+ ++   S   +  +A      
Sbjct: 518 VTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGK 577

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CE--R 378
           M    L P V T  + I  LC   +     ++  +M+     PN  TYS L+   C+  R
Sbjct: 578 MVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGR 637

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--SRRYE 416
            +D E+   LL++    G  PN+  +  ++ G+C   R YE
Sbjct: 638 AEDAEM-YNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYE 677



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 101/482 (20%), Positives = 202/482 (41%), Gaps = 47/482 (9%)

Query: 7   NMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR 66
           ++L+F +   +   + HD+S  +   NRL+R  R+    D                 H R
Sbjct: 93  SVLRFFFWISRRKFFKHDMSCFVSMLNRLVRD-RLFAPAD-----------------HVR 134

Query: 67  FFNV--CKSQKAIKEAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEGAFQVLRLVQ 119
              +  C+++  +K   +F   + +      TL +F  L+         + A  +   + 
Sbjct: 135 ILMIKSCRNEGEVKRVTQFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKML 194

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDA-------MFE-NVKPDRVVFNALITACGQSGAVD 171
            +G++     + T+I    K G+V         +F  +  P+   + +LI    ++  +D
Sbjct: 195 NSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLD 254

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
            AF +   M  +    DP+ +T   L+    + G+++ A ++ + + +  I+ T   YTI
Sbjct: 255 LAFAMFDRMVKD--GCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTI 312

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            +      G    A  +   M K+G +P+    +ALI      GK E A  +  +    G
Sbjct: 313 PLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADG 372

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           +    ++Y++L+        ++ A  +++ M S    P+  T N +I   C    + K M
Sbjct: 373 LVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAM 432

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
            +   M   G  PN ITY+ L+    ++ ++   + LL   K +G+ P+   +  +I   
Sbjct: 433 VIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGF 492

Query: 412 SR--RYEKARTL----NEHVLSFNS-GRPQIENKWTSL-----ALMVYREAIVAGTIPTV 459
           SR  + E A +L     EH +S N      I + + +L     AL ++ + + +G +P+ 
Sbjct: 493 SRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSS 552

Query: 460 EV 461
           + 
Sbjct: 553 QT 554



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/392 (20%), Positives = 166/392 (42%), Gaps = 16/392 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN-- 89
           N L ++GR+ E   ++  + R         Y +     C++   +  AF  F ++V +  
Sbjct: 210 NILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHN-LDLAFAMFDRMVKDGC 268

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT-LITTC---AKSGKVD 144
            P   T++ L++   S    E A  +L  + + G++     YT  L++ C     S  V+
Sbjct: 269 DPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVE 328

Query: 145 AMFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            + +  K    P+   F ALI+   + G  + A  +  +M A+   + P  +T  AL+  
Sbjct: 329 LLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLAD--GLVPTTVTYNALINQ 386

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G+ + A  ++K +  +    + + Y   I C    GD + A  ++D M K G  P+
Sbjct: 387 LCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPN 446

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  + LI      G +  A  +L+  K  G+     +Y+ L+   S     + A  L+ 
Sbjct: 447 VITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFY 506

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    + P   T  A+I    +  ++   + +   M   G  P++ TY++++    + +
Sbjct: 507 GMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTN 566

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            +        +  + G++PN++ +   I G+C
Sbjct: 567 SISEAENFCGKMVKQGLLPNVITYTSFIDGLC 598


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 169/371 (45%), Gaps = 21/371 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P +STFN+L+     +     A  +L  +   GL  D K +TT++    + G +D     
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR- 245

Query: 150 VKPDRVVF---------NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           ++   V F         N ++    + G V+ A + + EM+ +     PD  T   L+  
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQ-DGFFPDQYTFNTLVNG 304

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVI 258
              AG V  A E+  ++ +      P+VYT    I+   + G+ + A  V D M  +   
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYD--PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS 362

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+ V  + LI       +VE A E+ +   ++GI   + +++SL+      +N + A+EL
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           +E M+S   +P   T N LI +LC   +L + + +L  M+  G   + ITY+ L+    +
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIE 436
            +       +  + +  GV  N V +  +I G+C SRR E A  L + ++       Q  
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM----EGQKP 538

Query: 437 NKWTSLALMVY 447
           +K+T  +L+ +
Sbjct: 539 DKYTYNSLLTH 549



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 109/459 (23%), Positives = 201/459 (43%), Gaps = 32/459 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L R  ++   I +LEDM   GL+  +K +        + +  +  A R  + +     S 
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIE-EGDLDGALRIREQMVEFGCSW 257

Query: 95  FNMLMSVCASSKDSEGAFQ-VLRLVQEA----GLKADCKLYTTLITTCAKSGKV------ 143
            N+ ++V       EG  +  L  +QE     G   D   + TL+    K+G V      
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317

Query: 144 -DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M  E   PD   +N++I+   + G V  A +VL +M        P+ +T   L+   
Sbjct: 318 MDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT--RDCSPNTVTYNTLISTL 375

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIP 259
               QV+ A E+ +++    I   P+V T    I     T +   A  ++++M  KG  P
Sbjct: 376 CKENQVEEATELARVLTSKGI--LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEP 433

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           DE   + LID     GK++ A  +L++ +  G +  +I+Y++L+     A   ++A E++
Sbjct: 434 DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIF 493

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M+   +     T N LI  LC   ++    +++  M   G  P+  TY+ LL    R 
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRG 553

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHV------LSFNSG 431
            D++    ++     +G  P++V +  +I G+C + R E A  L   +      L+ ++ 
Sbjct: 554 GDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAY 613

Query: 432 RPQIE----NKWTSLALMVYREAIVAGTIPTVEVVSKVL 466
            P I+     + T+ A+ ++RE +     P   V  +++
Sbjct: 614 NPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIV 652



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 87/379 (22%), Positives = 162/379 (42%), Gaps = 19/379 (5%)

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           +  +  +SQ     A R F L    P  S    L           G+F  ++ + E    
Sbjct: 52  KLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKS 111

Query: 125 ADCKLYTTLITTCAKS-----------GKVDAMFEN--VKPDRVVFNALITACGQSGAVD 171
           + C++ T+      +S             VD M +   +KPD   +N ++       ++ 
Sbjct: 112 SRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLK 171

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
                 A+M+  V  + PD  T   L+KA   A Q+  A  + + +  Y +    + +T 
Sbjct: 172 LVEISHAKMS--VWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTT 229

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ- 290
            +    + GD + A  + + M + G     V ++ ++      G+VE A   +QE  NQ 
Sbjct: 230 VMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQD 289

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G      ++++L+     A + + A+E+ + M      P V T N++I+ LC   ++ + 
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 409
           +EVL  M +    PNT+TY+ L+    +++ VE    L       G++P++  F  +I G
Sbjct: 350 VEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 409

Query: 410 MC-SRRYEKARTLNEHVLS 427
           +C +R +  A  L E + S
Sbjct: 410 LCLTRNHRVAMELFEEMRS 428


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 99/424 (23%), Positives = 184/424 (43%), Gaps = 30/424 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERK--GLLDMDKVYHARFFNVCKS---QKAIKEAF 81
           +YN L+    R+GR+ +   LL +ME +  G L  D  Y+     + +    +KA +   
Sbjct: 233 TYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVD 292

Query: 82  RFFKLVPNPTLSTFNMLMS--VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           R  ++    +  TFN L++      S +  GA Q+   ++  G+      Y T+I    +
Sbjct: 293 RM-RMSKKASAFTFNPLITGYFARGSVEKAGALQLE--MENEGIVPTVVTYNTIIHGMFR 349

Query: 140 SGKVDAM---FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           SG V+A    F  ++     PD + +N+LI    ++G +  A  +  ++      + P  
Sbjct: 350 SGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRA--GLAPSV 407

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T   L+      G ++ AR   + + +   +     YTI +N   +  +       +D+
Sbjct: 408 LTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDE 467

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M  KG+ PD    +  I      G    AF++ +   ++GIS   ++Y+  +     + N
Sbjct: 468 MLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGN 527

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            + A  L+  M S  L+P   T   LI A C+  +L +  ++   M   GL P+ +TY++
Sbjct: 528 LKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTV 587

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK------CIIGMCSRRYEKARTLNEHV 425
            + A  R+ ++        +  E+GV PN V +       C +G  +  Y+    + E  
Sbjct: 588 FIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERG 647

Query: 426 LSFN 429
           LS N
Sbjct: 648 LSPN 651



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 145/332 (43%), Gaps = 19/332 (5%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +YN LI    + G + E + L  D++R GL      Y+      C+    ++EA RF 
Sbjct: 372 LITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGD-LEEARRFK 430

Query: 85  KLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           + +      P +ST+ +LM+     ++     +    +   GL+ DC  Y T I+     
Sbjct: 431 QEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELIL 490

Query: 141 GKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G     F+         +  D V +N  +    +SG +  A+ +  +M ++   + PD I
Sbjct: 491 GSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSD--GLQPDCI 548

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+ A    G++  AR+++  +    +  +   YT+ I+   + G+   A   +  M
Sbjct: 549 TYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKM 608

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            ++GV P+EV  + LI      G+   A++   E   +G+S    +Y+ L+       NW
Sbjct: 609 LEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNW 668

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDG 344
           ++A+ LY  M    + P   T NAL     +G
Sbjct: 669 EEAIRLYSEMHQHGIHPDHCTHNALFKGFDEG 700



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/355 (23%), Positives = 153/355 (43%), Gaps = 15/355 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQ--EAGLKADCKLYTTLITTCAKSGK----- 142
           P++ T+N L+         + A ++LR ++    G       Y  +I   A+ G+     
Sbjct: 229 PSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAA 288

Query: 143 --VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             VD M  + K     FN LIT     G+V++A  +  EM  E   + P  +T   ++  
Sbjct: 289 QLVDRMRMSKKASAFTFNPLITGYFARGSVEKAGALQLEMENE--GIVPTVVTYNTIIHG 346

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              +G V+ AR  +  +    +      Y   IN   + G+ + A  ++ D+ + G+ P 
Sbjct: 347 MFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPS 406

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +  + L+D     G +E A    QE   QG    + +Y+ LM      +N     E ++
Sbjct: 407 VLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFD 466

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M S  L+P     N  I+A        +  ++   M S G+  +T+TY+I L    +  
Sbjct: 467 EMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSG 526

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRP 433
           +++   +L  +   DG+ P+ + + C+I   C R R  +AR + + +L   SG P
Sbjct: 527 NLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLV--SGLP 579



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 141/359 (39%), Gaps = 19/359 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    R G +        +M   GLL     Y++     CK+   +KEA   F  
Sbjct: 339 TYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGN-LKEALWLFGD 397

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P++ T+N+L+       D E A +  + + E G + D   YT L+    K   
Sbjct: 398 LKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRN 457

Query: 143 V-------DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +       D M  + ++PD   +N  I+A    G+   AF +   M +    +  D +T 
Sbjct: 458 LAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISR--GISSDTVTY 515

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
              +     +G +  A  ++  +    ++     YT  I+   + G    A  ++D M  
Sbjct: 516 NIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLV 575

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G+ P  V  +  I      G + +A+   Q+   +G+    ++Y+ L+ A         
Sbjct: 576 SGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNL 635

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           A + +  M    L P   T   LI   C      + + + S+M   G+ P+  T++ L 
Sbjct: 636 AYQHFHEMLERGLSPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDHCTHNALF 694



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 9/190 (4%)

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--EAKNQGISVGIISY 299
           W+   SVY +M + G+ P  V  + L+D     G+V+ A ++L+  EA+  G     ++Y
Sbjct: 212 WDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEARPGGCLPSDVTY 271

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           + ++   +     +KA +L + M+  K K +  T N LIT       + K   +  +M++
Sbjct: 272 NVVINGLARKGELEKAAQLVDRMRMSK-KASAFTFNPLITGYFARGSVEKAGALQLEMEN 330

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKA 418
            G+ P  +TY+ ++    R  +VE   M   + +  G++P+L+ +  +I G C     KA
Sbjct: 331 EGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYC-----KA 385

Query: 419 RTLNEHVLSF 428
             L E +  F
Sbjct: 386 GNLKEALWLF 395



 Score = 40.8 bits (94), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 2/103 (1%)

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           L  +  M    + P +   N ++ AL D  +      V ++M  LG+ P+ +TY+ LL +
Sbjct: 181 LAAFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDS 240

Query: 376 CERKDDVEVGLMLLS--QAKEDGVIPNLVMFKCIIGMCSRRYE 416
             R+  V+    LL   +A+  G +P+ V +  +I   +R+ E
Sbjct: 241 FFREGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGE 283



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/112 (18%), Positives = 55/112 (49%), Gaps = 2/112 (1%)

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
            +E  + G+   I   + ++ A  +   W     +Y  M  + ++P++ T N L+ +   
Sbjct: 184 FREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFR 243

Query: 344 GDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
             ++ +  ++L +M++   G  P+ +TY++++    RK ++E    L+ + +
Sbjct: 244 EGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMR 295


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 160/350 (45%), Gaps = 17/350 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P +STFN+L+     +     A  +L  +   GL  D K +TT++    + G +D     
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALR- 245

Query: 150 VKPDRVVF---------NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           ++   V F         N ++    + G V+ A + + EM+ +     PD  T   L+  
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQ-DGFFPDQYTFNTLVNG 304

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVI 258
              AG V  A E+  ++ +      P+VYT    I+   + G+ + A    D M  +   
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYD--PDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCS 362

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+ V  + LI       +VE A E+ +   ++GI   + +++SL+      +N + A+EL
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           +E M+S   +P   T N LI +LC   +L + + +L  M+  G   + ITY+ L+    +
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
            + +     +  + +  GV  N V +  +I G+C SRR E A  L + ++
Sbjct: 483 ANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMI 532



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 99/404 (24%), Positives = 177/404 (43%), Gaps = 22/404 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L R  ++   I +LEDM   GL+  +K +        + +  +  A R  + +     S 
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIE-EGDLDGALRIREQMVEFGCSW 257

Query: 95  FNMLMSVCASSKDSEGAFQ-VLRLVQEA----GLKADCKLYTTLITTCAKSGKV------ 143
            N+ ++V       EG  +  L  +QE     G   D   + TL+    K+G V      
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317

Query: 144 -DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M  E   PD   +N++I+   + G V  A + L +M        P+ +T   L+   
Sbjct: 318 MDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMIT--RDCSPNTVTYNTLISTL 375

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIP 259
               QV+ A E+ +++    I   P+V T    I     T +   A  ++++M  KG  P
Sbjct: 376 CKENQVEEATELARVLTSKGI--LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEP 433

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           DE   + LID     GK++ A  +L++ +  G +  +I+Y++L+     A   ++A E++
Sbjct: 434 DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIF 493

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M+   +     T N LI  LC   ++    +++  M   G  P+  TY+ LL    R 
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRG 553

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
            D++    ++     +G  P++V +  +I G+C + R E A  L
Sbjct: 554 GDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKL 597



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/378 (21%), Positives = 160/378 (42%), Gaps = 18/378 (4%)

Query: 71  CKSQKAIKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
           CK  + +++A  F + + N     P   TFN L++    +   + A +++ ++ + G   
Sbjct: 270 CKEGR-VEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP 328

Query: 126 DCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVL 177
           D   Y ++I+   K G+V    E        +  P+ V +N LI+   +   V+ A ++ 
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
             + ++   + PD  T  +L++          A E+++ +     +     Y + I+   
Sbjct: 389 RVLTSK--GILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLC 446

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
             G  + A ++   M   G     +  + LID    A K+  A EI  E +  G+S   +
Sbjct: 447 SKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSV 506

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +Y++L+     ++  + A +L + M     KP   T N+L+T  C G  + K  +++  M
Sbjct: 507 TYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAM 566

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK 417
            S G  P+ +TY  L+    +   VEV   LL   +  G+      +  +I    R+ + 
Sbjct: 567 TSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKT 626

Query: 418 ARTLN--EHVLSFNSGRP 433
              +N    +L  N   P
Sbjct: 627 TEAINLFREMLEQNEAAP 644



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 164/379 (43%), Gaps = 19/379 (5%)

Query: 66  RFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           +  +  +SQ     A R F L    P  S    L           G+F  +R + E    
Sbjct: 52  KLLDSLRSQADDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMRKILEDMKN 111

Query: 125 ADCKLYTT----LITTCAKS-------GKVDAMFEN--VKPDRVVFNALITACGQSGAVD 171
           + C++ T+    LI + A+        G V  M ++  +KPD   +N ++        + 
Sbjct: 112 SGCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLK 171

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
                 A+M+  V  + PD  T   L+KA   A Q+  A  + + +  Y +    + +T 
Sbjct: 172 LVEIAHAKMS--VWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTT 229

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ- 290
            +    + GD + A  + + M + G     V ++ ++      G+VE A   +QE  NQ 
Sbjct: 230 IMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQD 289

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G      ++++L+     A + + A+E+ + M      P V T N++I+ LC   ++ + 
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 409
           +E L  M +    PNT+TY+ L+    +++ VE    L       G++P++  F  +I G
Sbjct: 350 VEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 409

Query: 410 MC-SRRYEKARTLNEHVLS 427
           +C +R +  A  L E + S
Sbjct: 410 LCLTRNHRVAMELFEEMRS 428


>gi|387219669|gb|AFJ69543.1| hypothetical protein NGATSA_2036000, partial [Nannochloropsis
           gaditana CCMP526]
 gi|422292844|gb|EKU20146.1| hypothetical protein NGA_2036000, partial [Nannochloropsis gaditana
           CCMP526]
          Length = 632

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 165/360 (45%), Gaps = 22/360 (6%)

Query: 46  DLLEDMERKGLLDMDKV-----YHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100
           DLL+  ER+       V      HAR   + +   A  EA R    +P  + +T   L+ 
Sbjct: 56  DLLDRFERRAPSQRAIVCNMVMEHARVHRLVEEGFAFLEAMRALD-IPRQS-ATLQPLLK 113

Query: 101 VCASSKDSEGAFQVL-RLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENVKPDRVV 156
           +C+S+       +++  +V++  LK   + Y+ +I    ++  V+    +F+ +  +   
Sbjct: 114 LCSSANRQRDVVRLVGEMVEKDKLKPQAQTYSQVIEAATRADMVEEALKLFQTMIAEG-- 171

Query: 157 FNA-------LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           F A       L+ A  ++G   RA D+L ++        P  I   A + AC N G  + 
Sbjct: 172 FPAGDKECTDLMAALARNGDWSRALDLLQDIRVYTK-RPPACIVYTAAVNACGNGGAWEM 230

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A  + + + +  I      Y+ AI  CS+ G WE A +++ +M ++G+  +EV  + +++
Sbjct: 231 ALMLMRRMEEEGIAPNSYTYSSAIKACSRAGKWEQASALFTEMQERGLPQNEVTYTVILN 290

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
               AG+++ A   L+  K +G+S     Y++ + ACS +  +Q+AL  +E MK+ K+  
Sbjct: 291 AHAKAGRLQEAAACLEGMKKRGLSPSTPHYTAAIDACSRSGEYQQALRWFEEMKNEKVPI 350

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLML 388
              T +A I     G    + + VL DM       ++ + Y + + AC R D   V   L
Sbjct: 351 NRMTYSATIAVCGKGGAWEQAVRVLLDMMLTSRDGSSHVCYMLAVDACRRSDQWPVAAYL 410



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 144/366 (39%), Gaps = 48/366 (13%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           RF +  P+      NM+M      +  E  F  L  ++   +         L+  C+ + 
Sbjct: 60  RFERRAPSQRAIVCNMVMEHARVHRLVEEGFAFLEAMRALDIPRQSATLQPLLKLCSSAN 119

Query: 142 K-------VDAMFEN--VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           +       V  M E   +KP    ++ +I A  ++  V+ A  +   M AE  P      
Sbjct: 120 RQRDVVRLVGEMVEKDKLKPQAQTYSQVIEAATRADMVEEALKLFQTMIAEGFPAGDKEC 179

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   LM A A  G   RA ++ + I  Y  K  P                  AC VY   
Sbjct: 180 T--DLMAALARNGDWSRALDLLQDIRVYT-KRPP------------------ACIVY--- 215

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
                       +A ++  G+ G  E A  +++  + +GI+    +YSS + ACS A  W
Sbjct: 216 ------------TAAVNACGNGGAWEMALMLMRRMEEEGIAPNSYTYSSAIKACSRAGKW 263

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           ++A  L+  M+   L     T   ++ A     +L +    L  MK  GL P+T  Y+  
Sbjct: 264 EQASALFTEMQERGLPQNEVTYTVILNAHAKAGRLQEAAACLEGMKKRGLSPSTPHYTAA 323

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA-RTLNEHVLSFN 429
           + AC R  + +  L    + K + V  N + +   I +C +   +E+A R L + +L+  
Sbjct: 324 IDACSRSGEYQQALRWFEEMKNEKVPINRMTYSATIAVCGKGGAWEQAVRVLLDMMLTSR 383

Query: 430 SGRPQI 435
            G   +
Sbjct: 384 DGSSHV 389


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 90/404 (22%), Positives = 179/404 (44%), Gaps = 20/404 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
             ++G +++  DL ++M ++G+      Y +    +CK+ +A+ +A  F + + N    P
Sbjct: 229 FFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKA-RAMDKAEAFLRQMVNKGVLP 287

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
              T+N L+   +S+   + A +V + ++   +  D    + L+ +  K GK+       
Sbjct: 288 NNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVF 347

Query: 144 DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M  +   P+   +  ++      G +    D+   M  +   + PD  T   L+KA A
Sbjct: 348 DTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGD--GIAPDIYTFNVLIKAYA 405

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           N G +D+A  ++  +  + +K     Y   I    + G  + A   ++ M  +GV PD+ 
Sbjct: 406 NCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKY 465

Query: 263 FLSALID-FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
               LI  F  H G +  A E++ E  N G+ + I+ +SS++           A  +++ 
Sbjct: 466 AYHCLIQGFCTH-GSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDL 524

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
             ++ L PT    + L+   C   ++ K + V   M S G+ PN + Y  L+    +   
Sbjct: 525 TVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGR 584

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
           ++ GL L  +  + G+ P+ +++  II      +E  RT+   V
Sbjct: 585 IDEGLSLFREMLQKGIKPSTILYNIII---DGLFEAGRTVPAKV 625



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 194/438 (44%), Gaps = 57/438 (13%)

Query: 36  IRQG--RISECIDLLEDMERKG--LLDMD------KVYHARFFNVCKSQKAIKEAFRFFK 85
           +R+G  R  E  DLL++++R+G  +L+ D       +  A     C+S  A+  A  F +
Sbjct: 38  VREGTLRPEEAHDLLDELQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVAL-FNR 96

Query: 86  L--------VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                    V +PT  T+ +LM  C  +   E A      +   GL+ +           
Sbjct: 97  AASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNI---------- 146

Query: 138 AKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
                            ++ N L+    ++   D A D+L     E+  V PD  +   L
Sbjct: 147 -----------------IIANHLLKGFCEAKRTDEALDILLHRTPELGCV-PDVFSYSIL 188

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKK 255
           +K+  + G+  +A ++ +M+ +     +P+V  Y+  I+   + GD   AC ++ +M ++
Sbjct: 189 LKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQR 248

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G+ PD V  S+++     A  ++ A   L++  N+G+     +Y++L+   S+   W++A
Sbjct: 249 GIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEA 308

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           + +++ M+   + P V T++ L+ +LC   ++ +  +V   M   G  PN  +Y+I+L  
Sbjct: 309 VRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNG 368

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQI 435
              K  +     L      DG+ P++  F  +I    + Y     L++ ++ FN    ++
Sbjct: 369 YATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLI----KAYANCGMLDKAMIIFN----EM 420

Query: 436 ENKWTSLALMVYREAIVA 453
            +      ++ YR  I A
Sbjct: 421 RDHGVKPDVVTYRTVIAA 438



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/411 (19%), Positives = 175/411 (42%), Gaps = 46/411 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L + G+I E  D+ + M  KG  + +   +    N   ++  + +    F L+      P
Sbjct: 334 LCKYGKIKEARDVFDTMAMKGQ-NPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAP 392

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN- 149
            + TFN+L+   A+    + A  +   +++ G+K D   Y T+I    + GK+D   E  
Sbjct: 393 DIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKF 452

Query: 150 -------VKPDRVVFNALITACGQSGAVDRAFDVLAE-MNAEVH---------------- 185
                  V PD+  ++ LI      G++ +A ++++E MN  +H                
Sbjct: 453 NQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKL 512

Query: 186 ----------------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
                            + P  +    LM      G++++A  V+  +    I+    VY
Sbjct: 513 GRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVY 572

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
              +N   + G  +   S++ +M +KG+ P  +  + +ID    AG+   A     E   
Sbjct: 573 GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTE 632

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            GI++   +Y+ ++      + + +A+ L++ ++++ +K  + T+N +I  +    ++ +
Sbjct: 633 SGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEE 692

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
             ++ + +   GL P  +TYSI++    ++  VE    + S  +  G  P+
Sbjct: 693 AKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPD 743


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 145/326 (44%), Gaps = 23/326 (7%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMSVCASSKDSEGAFQVLR 116
           F+ C+         ++FKLV              +L  FN+LM       D   A  V  
Sbjct: 101 FDTCRKVLEHLMKLKYFKLVWGFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 160

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG 168
            + + GL+     Y TL+    + G +D  F          V+PD   ++ LI    +  
Sbjct: 161 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 220

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +D A ++  EM   V  + P+ +T   L+      G+VD A E+YK +   ++      
Sbjct: 221 KMDDANELFDEM--LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLIT 278

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   I    + GD + A  + D+M+ KG+ PD+   + LID     G ++ AFE  +   
Sbjct: 279 YNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMI 338

Query: 289 NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
            + I +  ++Y++L+ G C   ++   A ++   M S+ LKP + T   +I   C    +
Sbjct: 339 QENIRLDDVAYTALISGLCQEGRS-VDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDV 397

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILL 373
            K  ++L +M+  G  P+ +TY++L+
Sbjct: 398 WKGSKLLKEMQRNGHAPSVVTYNVLM 423



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 109/265 (41%), Gaps = 6/265 (2%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFD--VLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           + D  VF+ LITA  +SG +  A +   L   +    P D     +  LMK         
Sbjct: 63  RSDIYVFSGLITAYLESGFLRDAIECYTLTREHKLWVPFDTCRKVLEHLMKL----KYFK 118

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
                Y+ I +     +   + I ++   + GD   A SV+D +TK G+ P  V  + L+
Sbjct: 119 LVWGFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 178

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +     G ++  F +       G+   + +YS L+           A EL++ M    L 
Sbjct: 179 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 238

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P   T   LI   C   ++   ME+   M S  L P+ ITY+ L+    +K D++    L
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDL 298

Query: 389 LSQAKEDGVIPNLVMFKCIIGMCSR 413
           + +    G+ P+   +  +I  C +
Sbjct: 299 IDEMSMKGLKPDKFTYTTLIDGCCK 323



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 101/257 (39%), Gaps = 23/257 (8%)

Query: 31  SYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           SYN L    IR G + E   L   M   G+      Y      +CK  K + +A   F  
Sbjct: 173 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-MDDANELFDE 231

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                LVPN    TF  L+     +   + A ++ + +    L  D   Y TLI    K 
Sbjct: 232 MLVKGLVPNGV--TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 289

Query: 141 GK-------VDAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G        +D M  + +KPD+  +  LI  C + G +D AF+    M  E   +  D +
Sbjct: 290 GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQE--NIRLDDV 347

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              AL+      G+   A ++ + +    +K     YT+ IN   + GD      +  +M
Sbjct: 348 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEM 407

Query: 253 TKKGVIPDEVFLSALID 269
            + G  P  V  + L++
Sbjct: 408 QRNGHAPSVVTYNVLMN 424


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 101/460 (21%), Positives = 195/460 (42%), Gaps = 41/460 (8%)

Query: 40  RISECIDLL-EDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-------PT 91
           R+ E +D+L + M   G       Y+      C  ++A +EA     ++ +       P 
Sbjct: 144 RLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRA-EEALELLHMMADSQGRSCPPN 202

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFE 148
           + ++ ++++   +    + A+ +   + + G++ +   YTT+I    K+  VD    +F+
Sbjct: 203 VVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQ 262

Query: 149 N-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 VKPD   +N LI      G       +L EM+A  H + PD  T G+L+    N
Sbjct: 263 QMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSA--HGLKPDCYTYGSLLNYLCN 320

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G+   AR ++  + +  IK    +Y I I+  +  G       + + M + G+ PD   
Sbjct: 321 NGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHI 380

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + +         ++ A  I  + K QG+S  +++Y +L+ A         A+  +  M 
Sbjct: 381 FNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMM 440

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           +  + P +   N+L+  LC  D+  K  E   +M + G+ P+ + ++ +L     K  V 
Sbjct: 441 NEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVM 500

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRYEKARTLNEHVLSFNSGRPQIENKWT 440
               L+   +  G  P ++ +  +IG   +  R  E A++L+  V+     +P   ++WT
Sbjct: 501 KAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLD--VMLSVGLKP---DEWT 555

Query: 441 SLALM--------------VYREAIVAGTIPTVEVVSKVL 466
              L+              V+RE +  G  P V   S +L
Sbjct: 556 YNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTIL 595



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/403 (21%), Positives = 171/403 (42%), Gaps = 20/403 (4%)

Query: 22  AHDVSEQLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AH +    ++Y    N L   GR  E   L + M RKG+     +Y     +   ++ A+
Sbjct: 301 AHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIY-GILIHGYATKGAL 359

Query: 78  KEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            E      L+    LS     FN++ +  A     + A  +   +++ GL  D   Y  L
Sbjct: 360 SEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGAL 419

Query: 134 ITTCAKSGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I    K G+VD         M E V P+  VFN+L+         ++A +   EM  +  
Sbjct: 420 IDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQ-- 477

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + PD +    ++      GQV +A+ +  ++ +   +     YT  I      G  + A
Sbjct: 478 GIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEA 537

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
               D M   G+ PDE   + L+     AG+++ A+ + +E    GI+ G+++YS+++  
Sbjct: 538 AKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHG 597

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
               + + +A ELY +M +   +  +   N ++  L   + + +  ++   + S      
Sbjct: 598 LFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLE 657

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             T++I++ A  +    E  + L +     G++P++  + C+I
Sbjct: 658 ITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTY-CLI 699



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/410 (20%), Positives = 162/410 (39%), Gaps = 28/410 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           ++  I E + +   M+++GL      Y A    +CK  +      +F +++     P + 
Sbjct: 390 KKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIF 449

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA------MF 147
            FN L+    +    E A +    +   G++ D   + T++      G+V        + 
Sbjct: 450 VFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLM 509

Query: 148 ENV--KPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACA 202
           E V  +P  + +  LI      G +D A    DV+  +      + PD  T   L+    
Sbjct: 510 ERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVG-----LKPDEWTYNTLLHGYC 564

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AG++D A  V++ + +  I      Y+  ++    T  +  A  +Y +M   G   +  
Sbjct: 565 RAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIW 624

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + +++       V+ AF++ Q   ++   + I +++ ++GA   +   + A+ L+  +
Sbjct: 625 IYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATI 684

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            S  L P V T   +   L +   L +  ++ S M+  G  PN+   + L+     + D+
Sbjct: 685 SSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDI 744

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RY--------EKARTLNE 423
                 L +  E            +I + SR  Y        EK R LNE
Sbjct: 745 TRAGAYLCKLDEKNFSLEASTTAMLISLLSRDEYHHHATSLPEKYRVLNE 794



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 6/200 (3%)

Query: 215 KMIHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           +MI +  IK TP+   Y+I I C  + G  E   + +  + K G   + + ++ L+    
Sbjct: 81  RMIRECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLC 140

Query: 273 HAGKVEAAFEIL-QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK--- 328
            A ++  A +IL +     G +  ++SY++L+    N K  ++ALEL   M   + +   
Sbjct: 141 DAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCP 200

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P V +   +I       Q+ K   +  +M   G+ PN +TY+ ++    +   V+    +
Sbjct: 201 PNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGV 260

Query: 389 LSQAKEDGVIPNLVMFKCII 408
             Q  + GV P+   + C+I
Sbjct: 261 FQQMIDKGVKPDNDTYNCLI 280


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/393 (21%), Positives = 178/393 (45%), Gaps = 16/393 (4%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           +S    + N ++ +  + E I+L +++  K +   + +  A    +C + + +K+A + F
Sbjct: 228 ISPSPEACNAVLSRLPLDEAIELFQELPHKNVCSYNILLKA----LCDAGR-VKDARQLF 282

Query: 85  -KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            ++   P + T+ +L+    +  + E A ++L  +   G++ +  +YT+++      G +
Sbjct: 283 DEMASAPDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWI 342

Query: 144 --------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                   D +   V  D  ++  +++     G +  A     EM  +   +  D +T  
Sbjct: 343 SDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRK--GLATDGVTYT 400

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++     A +++ A ++ + +    +      YT+ I+   + G    A  +++ M ++
Sbjct: 401 TMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQR 460

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           GV P+ V  +AL D     G V+AA E+L E  N+G+ +   +Y+SL+     A   ++A
Sbjct: 461 GVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQA 520

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           +     M +  LKP V T   LI ALC    L +   +L +M   G+ P  +TY++L+  
Sbjct: 521 MRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNG 580

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                 VE G  LL    E  + PN   +  ++
Sbjct: 581 FCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLM 613



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 165/376 (43%), Gaps = 17/376 (4%)

Query: 35  LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS 93
           L  +G IS+ + ++EDM +RK +LD + +Y       C     +  A R+F  +    L+
Sbjct: 336 LCDKGWISDALRVVEDMVQRKVILD-EALYTTVLSGFCNKGDLVS-ARRWFDEMQRKGLA 393

Query: 94  T----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           T    +  +++    + + E A ++L+ +    L  D   YT LI    K GK+   F+ 
Sbjct: 394 TDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQM 453

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   V P+ V + AL     + G V  A ++L EM+ +   ++ +  T  +L+   
Sbjct: 454 HNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNK--GLELNACTYNSLINGL 511

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AG +++A      +    +K     YT  I+   ++GD + A S+  +M  KG+ P  
Sbjct: 512 CKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTI 571

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L++    +G+VE   ++L     + I     +Y+SLM       N +   E+Y+ 
Sbjct: 572 VTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKG 631

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+S  + P  +T N LI   C    + + +    +M   G      +YS L+    +K  
Sbjct: 632 MRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKK 691

Query: 382 VEVGLMLLSQAKEDGV 397
                 L    +++G+
Sbjct: 692 FVEARELFHDMRKEGL 707



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/364 (21%), Positives = 163/364 (44%), Gaps = 17/364 (4%)

Query: 48  LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS----TFNMLMS-VC 102
            ++M+RKGL      Y      +C++ + ++EA +  + +    L     T+ +L+   C
Sbjct: 384 FDEMQRKGLATDGVTYTTMINGLCRAVE-LEEAEKLLQEMWARRLDVDEVTYTVLIDGYC 442

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDR 154
              K +E AFQ+   + + G+  +   YT L     K G V A  E         ++ + 
Sbjct: 443 KRGKMAE-AFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNA 501

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
             +N+LI    ++G +++A   +A+M+     + PD  T   L+ A   +G +DRA  + 
Sbjct: 502 CTYNSLINGLCKAGYLEQAMRTMADMDTAC--LKPDVYTYTTLIDALCKSGDLDRAHSLL 559

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           + +    IK T   Y + +N    +G  E    + D M +K + P+    ++L+      
Sbjct: 560 QEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIE 619

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
             +++  EI +  +++ +     +Y+ L+     A+N ++AL  ++ M     + T ++ 
Sbjct: 620 NNMKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSY 679

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           +ALI  L    +  +  E+  DM+  GL   +  Y   +     +D++E  L L  +  E
Sbjct: 680 SALIRLLNKKKKFVEARELFHDMRKEGLTAESDVYDFYIDLNFNEDNLESTLALCDELVE 739

Query: 395 DGVI 398
             ++
Sbjct: 740 ASIV 743



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/198 (19%), Positives = 85/198 (42%), Gaps = 12/198 (6%)

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           + + +Y I  +PE    A N        + A  ++ ++  K V    + L AL D    A
Sbjct: 221 RRLRQYGISPSPE----ACNAVLSRLPLDEAIELFQELPHKNVCSYNILLKALCD----A 272

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G+V+ A ++  E  +   +  +++Y  L+         + A++L + M +  ++P  +  
Sbjct: 273 GRVKDARQLFDEMAS---APDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVY 329

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
            +++  LCD   +   + V+ DM    +  +   Y+ +L     K D+        + + 
Sbjct: 330 TSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQR 389

Query: 395 DGVIPNLVMFKCII-GMC 411
            G+  + V +  +I G+C
Sbjct: 390 KGLATDGVTYTTMINGLC 407


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 139/312 (44%), Gaps = 14/312 (4%)

Query: 126 DCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG-AVDRAFDV 176
           D + YTT++   +++GK     E         + P  V +N ++   G+ G + D+  ++
Sbjct: 221 DVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILEL 280

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
           L EM +    +D D  T   ++ AC   G +D ARE +  +     K     Y   ++  
Sbjct: 281 LDEMRSR--GLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVF 338

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            + G +  A SV  +M +    PD V  + ++     AG  E    ++    ++GI    
Sbjct: 339 GKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNA 398

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           ++Y++++ A     +  KALE+++ M  +   P V+T NA++  L       + M++L  
Sbjct: 399 VTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSLSEEMMKILGH 458

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSR 413
           MK  G  PN IT++ +L  C +K   +    +  + K  G  P+   F  +I   G C  
Sbjct: 459 MKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGS 518

Query: 414 RYEKARTLNEHV 425
             + A+   E +
Sbjct: 519 NNDAAKMHEEMI 530



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 92/425 (21%), Positives = 172/425 (40%), Gaps = 83/425 (19%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           LH+Y+R    G+    I++ E M   GL                                
Sbjct: 229 LHAYSR---TGKYHRAIEIFERMNESGL-------------------------------- 253

Query: 89  NPTLSTFNMLMSVCAS-SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-- 145
           +P+L T+N+++ V     +  +   ++L  ++  GL  D    +T+++ C + G +D   
Sbjct: 254 SPSLVTYNVMLDVYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAR 313

Query: 146 -MF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             F     E  KP  V +NAL+   G++G    A  VL+EM     P  PD +T   ++ 
Sbjct: 314 EFFSGLKSEGYKPGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCP--PDAVTYNEVVA 371

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A   AG  +    V   +    I      YT  IN   + GD + A  ++D M + G +P
Sbjct: 372 AYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVP 431

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---------- 309
           +    +A++   G     E   +IL   K  G S   I++++++  C             
Sbjct: 432 NVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVF 491

Query: 310 ---KNW----------------------QKALELYEHMKSIKLKPTVSTMNALITALCDG 344
              KN                         A +++E M      P ++T NAL+ AL   
Sbjct: 492 REMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARR 551

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPNLVM 403
                   V+ DM++ G  P+  +YS+++ +  +  +V+ G+ ++ ++  DG + P+ ++
Sbjct: 552 GDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVK-GIEMIEKSIYDGDIFPSWML 610

Query: 404 FKCII 408
            + ++
Sbjct: 611 LRTLV 615



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 94/440 (21%), Positives = 185/440 (42%), Gaps = 68/440 (15%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPT 91
           +R G   E   +++ M  KG++  + V +    N       I +A   F    +L   P 
Sbjct: 374 VRAGFHEEGAVVIDAMASKGIMP-NAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPN 432

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDAMFE 148
           ++T+N ++ +      SE   ++L  ++  G   +   + T++  C K G    V+ +F 
Sbjct: 433 VATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFR 492

Query: 149 NVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEV--HPVDPDHITIGALMKAC 201
            +K     PDR  FN LI+A G+ G+ + A    A+M+ E+      P   T  AL+ A 
Sbjct: 493 EMKNCGFEPDRDTFNTLISAYGRCGSNNDA----AKMHEEMIKAGFSPCINTYNALLNAL 548

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-------------------W 242
           A  G    A  V   +     + +   Y++ ++  ++ G+                   W
Sbjct: 549 ARRGDWKAAESVILDMRNKGFRPSETSYSLMVHSYAKGGNVKGIEMIEKSIYDGDIFPSW 608

Query: 243 ---------EFACS-------VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
                     F C         +  + K G  PD V  ++++         + A E+L+ 
Sbjct: 609 MLLRTLVLANFKCRSLTGMERAFQALQKHGYKPDLVLCNSMLSIFAKNNMYDRAHEMLRL 668

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
             + G+   +++++SLM   +   +  KA E+   +++   KP + + N +I   C    
Sbjct: 669 IHDAGLQPDLVTHNSLMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGL 728

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERK------DDVEVGLMLLSQAKEDGVIPN 400
           + + + +LS+M S+G+ P   TY+  +     +      +DV +  M++   +     PN
Sbjct: 729 MQEGIRILSEMTSIGVGPCIFTYNTFISGYAAQGMFTEINDV-ISYMIVHNCR-----PN 782

Query: 401 LVMFKCII-GMC-SRRYEKA 418
            + +K +  G C +RRY++A
Sbjct: 783 ELTYKIVADGYCKARRYDEA 802



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 107/242 (44%), Gaps = 24/242 (9%)

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFEILQEA 287
           YT  ++  S+TG +  A  +++ M + G+ P  V  + ++D  G  G+  +   E+L E 
Sbjct: 225 YTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILELLDEM 284

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           +++G+     + S+++ AC       +A E +  +KS   KP   T NAL+         
Sbjct: 285 RSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVFGKAGIF 344

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            + + VLS+M+     P+ +TY+ ++ A  R    E G +++      G++PN V +  I
Sbjct: 345 SEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTI 404

Query: 408 IGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLG 467
           I    R  +  +                       AL ++ + +  G +P V   + VLG
Sbjct: 405 INAYGRVGDIDK-----------------------ALEMFDQMMELGCVPNVATYNAVLG 441

Query: 468 CL 469
            L
Sbjct: 442 ML 443



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 1/170 (0%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  ++D +     + D    + ++      GK   A EI +     G+S  +++Y+ ++ 
Sbjct: 206 ASKLFDVIPLDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLD 265

Query: 305 ACSN-AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                 ++W K LEL + M+S  L     T + +++A      + +  E  S +KS G  
Sbjct: 266 VYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYK 325

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           P T+TY+ LL    +       L +LS+ +E+   P+ V +  ++    R
Sbjct: 326 PGTVTYNALLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVR 375


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/402 (22%), Positives = 188/402 (46%), Gaps = 24/402 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+G + E  +++  M  KGL      Y+A    +CK  +  +      ++
Sbjct: 155 TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 214

Query: 87  VP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           +    +P  +T+N L+       +   A ++   +   G+  D   +++LI   +++  +
Sbjct: 215 LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHL 274

Query: 144 D---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D     F ++K     PD V++  L+    ++G +  A  +  EM  +   +D   I   
Sbjct: 275 DQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDV--IAYN 332

Query: 196 ALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDM 252
            ++        +  A +++ +M+ +      P+ YT    I+   Q G+   A S++  M
Sbjct: 333 TILNGLCKEKMLTDADKLFDEMVER---GALPDFYTFTTLIHGHCQDGNMTKALSLFGTM 389

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
           T++ + PD V  + LID     G++E A E+     ++ I    I+Y  L+ A  +  + 
Sbjct: 390 TQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHV 449

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
            +A  L++ M    +KPT+ T N +I   C      K  E L  M + G+ P+ I+Y+ L
Sbjct: 450 SEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTL 509

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
           +    R+D+++   + +++ +++G++P+++ +  ++ G C +
Sbjct: 510 INGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQ 551



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 87/398 (21%), Positives = 171/398 (42%), Gaps = 23/398 (5%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAF- 81
           L +YN +I    ++GR +    +L +M   GL      Y+      C+       KE F 
Sbjct: 188 LFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFG 247

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
              +    P L +F+ L++V + ++  + A    R +++ GL  D  +YT L+    ++G
Sbjct: 248 EMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNG 307

Query: 142 KV-------DAMFEN-VKPDRVVFNALITACGQSGAV---DRAFDVLAEMNAEVHPVDPD 190
            +       D M E     D + +N ++    +   +   D+ FD + E  A      PD
Sbjct: 308 NMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGAL-----PD 362

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
             T   L+      G + +A  ++  + + NIK     Y   I+   + G+ E A  ++D
Sbjct: 363 FYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWD 422

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            M  + + P+ +    LI+     G V  AF +      +GI   +++ ++++     + 
Sbjct: 423 GMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSG 482

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
           +  KA E    M +  + P   + N LI      D + K    ++ M+  GL P+ ITY+
Sbjct: 483 DSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYN 542

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +++    R+  ++   ++L +  E G+ P+   +  +I
Sbjct: 543 VVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALI 580



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 132/277 (47%), Gaps = 18/277 (6%)

Query: 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 218
           ALI    +   V R   V A +++       +++    L++    A ++    E ++++ 
Sbjct: 16  ALILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLVFDLLIRTYVQARKLREGTEAFRILR 75

Query: 219 KYNIKGTPEVYTIAINCCSQ------TGDW-EFACSVYDDMTKKGVIPDEVFLSALIDFA 271
               KG    Y ++IN C+         DW E A  V+ ++ + G+  +   L+ +++  
Sbjct: 76  S---KG----YLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNAL 128

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              GK +     L E +  GI   +++Y++L+GA       ++A E+   M    LKP++
Sbjct: 129 CKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSL 188

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T NA+I  LC   +  +   +L +M ++GL P+T TY+ LLV   R+D+      +  +
Sbjct: 189 FTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGE 248

Query: 392 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF 428
               GV+P+LV F  +I + SR     R L++ ++ F
Sbjct: 249 MLRQGVVPDLVSFSSLIAVFSRN----RHLDQALVYF 281



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 139/364 (38%), Gaps = 50/364 (13%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           T N++++        +     L  ++  G+ AD   Y TLI    + G ++  FE     
Sbjct: 120 TLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSM 179

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANA 204
               +KP    +NA+I    + G   RA  +L EM N     + PD  T   L+      
Sbjct: 180 ADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNI---GLSPDTTTYNTLLVESCRR 236

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
                A+E++  + +  +      ++  I   S+    + A   + DM K G++PD V  
Sbjct: 237 DNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIY 296

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM--------------------- 303
           + L+      G +  A +I  E   QG  + +I+Y++++                     
Sbjct: 297 TVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVE 356

Query: 304 ---------------GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
                          G C +  N  KAL L+  M    +KP +   N LI   C   ++ 
Sbjct: 357 RGALPDFYTFTTLIHGHCQDG-NMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEME 415

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           K  E+   M S  + PN ITY IL+ A      V     L     E G+ P LV    +I
Sbjct: 416 KASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVI 475

Query: 409 -GMC 411
            G C
Sbjct: 476 KGYC 479



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 84/358 (23%), Positives = 151/358 (42%), Gaps = 17/358 (4%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAI 77
           V   L S++ LI    R   + + +    DM++ GL+  + +Y       C++    +A+
Sbjct: 254 VVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEAL 313

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
           K      +      +  +N +++     K    A ++   + E G   D   +TTLI   
Sbjct: 314 KIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGH 373

Query: 138 AKSG---KVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            + G   K  ++F      N+KPD V +N LI    + G +++A ++   M +    + P
Sbjct: 374 CQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMIS--RKIFP 431

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           +HIT G L+ A  + G V  A  ++ ++ +  IK T       I    ++GD   A    
Sbjct: 432 NHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFL 491

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
             M  KGV PD +  + LI+       ++ AF  + + + +G+   II+Y+ +M      
Sbjct: 492 GRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQ 551

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
              Q+A  +   M    + P  ST  ALI      D L +      +M   G  P+ +
Sbjct: 552 GRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDDV 609



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/327 (20%), Positives = 130/327 (39%), Gaps = 11/327 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
            F++L+     ++      +  R+++  G         +L+    K   V+  +E     
Sbjct: 50  VFDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREV 109

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               ++ +    N ++ A  + G  D     L+EM  E + +  D +T   L+ A    G
Sbjct: 110 VRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEM--EGNGIYADMVTYNTLIGAYCREG 167

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            ++ A E+   +    +K +   Y   IN   + G +  A  +  +M   G+ PD    +
Sbjct: 168 LLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYN 227

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+  +        A EI  E   QG+   ++S+SSL+   S  ++  +AL  +  MK  
Sbjct: 228 TLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKF 287

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            L P       L+   C    + + +++  +M   G   + I Y+ +L    ++  +   
Sbjct: 288 GLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDA 347

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMC 411
             L  +  E G +P+   F  +I G C
Sbjct: 348 DKLFDEMVERGALPDFYTFTTLIHGHC 374



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/244 (21%), Positives = 104/244 (42%), Gaps = 7/244 (2%)

Query: 178 AEMNAEVH------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
            E+  EVH       ++ +  T+  ++ A    G+ D  +     +    I      Y  
Sbjct: 99  VELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNT 158

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            I    + G  E A  + + M  KG+ P     +A+I+     G+   A  IL E  N G
Sbjct: 159 LIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIG 218

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           +S    +Y++L+       N+ +A E++  M    + P + + ++LI        L + +
Sbjct: 219 LSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQAL 278

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
               DMK  GL P+ + Y++L+    R  ++   L +  +  E G + +++ +  I+ G+
Sbjct: 279 VYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGL 338

Query: 411 CSRR 414
           C  +
Sbjct: 339 CKEK 342



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 12/187 (6%)

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--- 141
           K+ PN    T+ +L++   S      AF++  ++ E G+K       T+I    +SG   
Sbjct: 428 KIFPNHI--TYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSS 485

Query: 142 KVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           K D        + V PD + +N LI    +   +D+AF  + +M  E   + PD IT   
Sbjct: 486 KADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKE--GLLPDIITYNV 543

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           +M      G++  A  V + + +  I      YT  IN      +   A   +D+M ++G
Sbjct: 544 VMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRG 603

Query: 257 VIPDEVF 263
             PD+VF
Sbjct: 604 FAPDDVF 610


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 112/517 (21%), Positives = 212/517 (41%), Gaps = 56/517 (10%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVP-NPTLST 94
           G+  +   L+++M RKG +     Y      +C + K +++AF  F   K+V   P + T
Sbjct: 202 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATK-VEKAFLLFQEMKMVGVTPDVYT 260

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFENV- 150
           + +L+     +   E A  +   ++  G       YT LI    K+ +V   + +F  + 
Sbjct: 261 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 320

Query: 151 ----KPDRVVFNALITACGQSGAVDRAFDVLAEMNA--------------EVHPVDPDHI 192
               +P+ V + AL+    ++G + +AF+V A++                + H + P+ +
Sbjct: 321 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 380

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T GAL+     A +VD A E+   +     +    VY   I+   + G  + A  V+  M
Sbjct: 381 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 440

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
           TK G +P     ++LID     G+++ A ++L +      +  +++Y++++         
Sbjct: 441 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 500

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +KAL+L   M+     P V T  ALI  L    ++  ++++ + M   G  PN +TY +L
Sbjct: 501 EKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 560

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
           +        ++   +LL + K+      L  ++C I   S+ +  +  + E + S+    
Sbjct: 561 INHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESY---- 616

Query: 433 PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADAL 492
                                GT+P   V   ++ C       +I   L + +     ++
Sbjct: 617 ---------------------GTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSV 655

Query: 493 KRSN--LCSLIDG--FGEYDPRAFSLLEEAASFGIVP 525
           K  N    SLI           AF L  E    G VP
Sbjct: 656 KTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVP 692



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 10/235 (4%)

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           M E   P+  +FN+L+ +         A+ +L  M     P  P ++     + +     
Sbjct: 104 MTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCP--PGYVVYNIFIGSICGQE 161

Query: 206 QV------DRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           ++      D A ++Y +M+    +     V   A  C    G ++ A  +  +M +KG +
Sbjct: 162 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFA-RCLCGVGKFDKAFQLIKEMMRKGFV 220

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD    S +I F  HA KVE AF + QE K  G++  + +Y+ L+ +   A   ++A  L
Sbjct: 221 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 280

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +E M+S+   PTV T  ALI A     Q+P+  ++   M   G  PN +TY  L+
Sbjct: 281 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 335



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 88/414 (21%), Positives = 150/414 (36%), Gaps = 96/414 (23%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +PT+ T+  L+     +K    A  +   + +AG + +   Y  L+    K+G +   FE
Sbjct: 290 SPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFE 349

Query: 149 ------------------------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
                                    + P+ V + AL+    ++  VD A ++L  M +  
Sbjct: 350 VYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS- 408

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
              +P+HI   AL+     AG++D A+EV+  + K     +   YT  I+   + G  + 
Sbjct: 409 -GCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDL 467

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  V   M K    P+ V  +A+ID     G+ E A ++L   + +G S  +++Y++L+ 
Sbjct: 468 AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALID 527

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK--------------- 349
               A     +L+L+  M      P   T   LI  LC    L K               
Sbjct: 528 GLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPK 587

Query: 350 ------------------TMEVLSDMKSLGLCPNTITYSILL------------------ 373
                             ++ +L +M+S G  P    Y +L+                  
Sbjct: 588 YLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKE 647

Query: 374 ---VACERKDD----------------VEVGLMLLSQAKEDGVIPNLVMFKCII 408
              V    K D                VE    L S+    G +P L +F C+I
Sbjct: 648 MMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLI 701



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 162/412 (39%), Gaps = 41/412 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L ++GR ++ +D++E  + K    +D V      +         EA  F  ++  N   P
Sbjct: 20  LCKEGRWADALDMIEREDFK----LDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIP 75

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            + T+  L+S     K      +++ ++   G   +  L+ +L+ +          ++  
Sbjct: 76  NVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLL 135

Query: 149 ------NVKPDRVVFNALI-TACGQS-----GAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                    P  VV+N  I + CGQ        +D A  +  EM A    ++   + +  
Sbjct: 136 NRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLN--KVNVAN 193

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
             +     G+ D+A ++ K + +         Y+  I         E A  ++ +M   G
Sbjct: 194 FARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVG 253

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V PD    + LID    AG +E A  + +E ++ G S  +++Y++L+ A   AK   +A 
Sbjct: 254 VTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAN 313

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--------------- 361
           +++  M     +P   T  AL+  LC    + K  EV + +                   
Sbjct: 314 DIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRH 373

Query: 362 -LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            L PN +TY  L+    +   V+    LL      G  PN +++  +I G C
Sbjct: 374 TLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFC 425



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 151/367 (41%), Gaps = 32/367 (8%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--A 76
           H ++  + +Y  L+    +  ++    +LL+ M   G      VY A     CK+ K  +
Sbjct: 373 HTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDS 432

Query: 77  IKEAF-RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            +E F +  K    P++ T+  L+         + A +VL  + +     +   YT +I 
Sbjct: 433 AQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMID 492

Query: 136 TCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              + G+ +   +           P+ V + ALI   G++G +D + D+  +M+ +    
Sbjct: 493 GLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRK--GC 550

Query: 188 DPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
            P+++T   L+     AG +D+AR +  +M   Y  K     Y     C  Q     F  
Sbjct: 551 SPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPK-----YLQGYRCAIQGFSKSFIA 605

Query: 247 S--VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--YSSL 302
           S  + ++M   G +P       LID    AG++E A E+ +E      SV   +  Y+SL
Sbjct: 606 SLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASL 665

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           + A   A   ++A  LY  M      P +S    LI  L +  +  + +++       G+
Sbjct: 666 IQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQL-----CYGI 720

Query: 363 CPNTITY 369
           C   + +
Sbjct: 721 CHEGVNW 727


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/407 (22%), Positives = 177/407 (43%), Gaps = 28/407 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + G+  + + + ++M +KG+     +Y      +C++++   +  R    +     
Sbjct: 209 NGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRT-DDVHRLLNTMKVSGC 267

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P   T N L+         + AF +L+L ++ G     K Y++LI    ++ + D + E
Sbjct: 268 CPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQE 327

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                    ++PD V++  LI    + G VD A ++L +M      + PD     AL+K 
Sbjct: 328 WCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQ--RGLSPDTYCYNALIKG 385

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             + G +D+AR +   I K +   T   YTI I    + G  + A  +++ M   G  P 
Sbjct: 386 FCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPS 445

Query: 261 EVFLSALIDFAGHAGKVEAA---FEILQEAKNQGISVGI----------ISYSSLMGACS 307
            +  +ALID    AG++E A   F  ++  KN  + + +           S  +++    
Sbjct: 446 IMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLC 505

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            +    KA +L   +    + P + T N LI   C    +    ++  +++  G  P+++
Sbjct: 506 ESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSV 565

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           TY  L+    R D  E    +L Q  ++G  P+  ++KC++    R+
Sbjct: 566 TYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRK 612



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 108/479 (22%), Positives = 206/479 (43%), Gaps = 42/479 (8%)

Query: 69  NVCKSQKAIKEAFRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           +V + Q+  +  FRFF          +  T N+++ + A     +  +++L  ++ + ++
Sbjct: 69  DVMREQRRPELGFRFFIWTTRRRSFRSWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQ 128

Query: 125 ADCKLYTTLITTCAKSGKVDAMFENV--------KPDRVVFNALITACGQSGAVDRAFDV 176
                ++ LI   AKSG  +   E+         KPD   +N+++    Q      A  V
Sbjct: 129 IPPPTFSVLIAAYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAV 188

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
             +M    +  +P+  T   L+      G+ D A +++  + +  I     +YTI ++  
Sbjct: 189 YNQMLKLNY--NPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGL 246

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            Q    +    + + M   G  PD +  +AL+D     G+++ AF +LQ  + +G  +GI
Sbjct: 247 CQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGI 306

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
             YSSL+     AK + +  E    M    ++P V     LI   C+   +   + +L+D
Sbjct: 307 KGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLND 366

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLM-----LLSQAKEDGVIPNLVMFKCII-GM 410
           M   GL P+T  Y+ L+     K   +VGL+     L  +  ++   P    +  +I GM
Sbjct: 367 MTQRGLSPDTYCYNALI-----KGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGM 421

Query: 411 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPT--VEVVSKVLGC 468
           C     +   L+E    FN    Q+EN   S ++M +  A++ G      +E    +   
Sbjct: 422 C-----RNGLLDEARQIFN----QMENLGCSPSIMTF-NALIDGLCKAGELEEARHLFYK 471

Query: 469 LQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
           +++  N  +  RL +      D    ++L ++++   E     +A+ LL + A  G+VP
Sbjct: 472 MEIGKNPSLFLRLSQGADRVMDT---ASLQTMVERLCESGLILKAYKLLMQLADSGVVP 527



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 62/285 (21%), Positives = 113/285 (39%), Gaps = 40/285 (14%)

Query: 32  YNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFF 84
           Y  LIR     G +   +++L DM ++GL      Y+A     C      KA        
Sbjct: 344 YTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEIS 403

Query: 85  KLVPNPTLSTFNMLMSVCASSKDS--EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           K    PT  T+ +L  +C   ++   + A Q+   ++  G       +  LI    K+G+
Sbjct: 404 KNDCFPTSCTYTIL--ICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGE 461

Query: 143 VDA---MFENVK--------------PDRVV----FNALITACGQSGAVDRAFDVLAEMN 181
           ++    +F  ++               DRV+       ++    +SG + +A+ +L ++ 
Sbjct: 462 LEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLA 521

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE--VYTIAINCCSQ 238
                V PD +T   L+     A  ++ A   +K+  +  +KG +P+   Y   I+   +
Sbjct: 522 DS--GVVPDIMTYNVLINGFCKAKNINGA---FKLFRELQLKGHSPDSVTYGTLIDGFHR 576

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
               E A  V D M K G  P       L+ ++   GK+  AF +
Sbjct: 577 VDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSL 621


>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
          Length = 905

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 168/388 (43%), Gaps = 13/388 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLS 93
           + G +    +L+ +ME  G+     VYH+        Q   K    F +L      P++ 
Sbjct: 385 QSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSII 444

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDAMFEN- 149
           ++  L+++         A  + + ++  G+K + K Y+ LI             A+FE  
Sbjct: 445 SYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEM 504

Query: 150 ----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               ++PDR ++N LI A  + G +DRA  +L +M  E   + P +     +++  A AG
Sbjct: 505 LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKER--MQPSNRAFRPIIEGYAVAG 562

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +  A +   ++ +     T   Y   I+   +    + A SV D M+  G+ P+E   +
Sbjct: 563 DMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYT 622

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            ++     +G +  AFE   + K  G+ + +  Y +L+ AC  +   Q AL +   M   
Sbjct: 623 IIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ 682

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           K+       N LI        + +  +++  MK  G+ PN  TY+  + AC +  D++  
Sbjct: 683 KIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 742

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             ++ +  + G+ PN+  +  +I   +R
Sbjct: 743 EKVIEEMVDVGLKPNVKTYTTLIKGWAR 770



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 162/355 (45%), Gaps = 15/355 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N  ++ G++++ + + ++ME  G+   +K Y +   N          AF  F+ +     
Sbjct: 451 NLYVKIGKVAKALSISKEMESCGIKHNNKTY-SMLINGFIHLHDFANAFAIFEEMLRSGL 509

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P  + +N+L+       + + A  +L  +Q+  ++   + +  +I   A +G + +  +
Sbjct: 510 QPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALD 569

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            +         P  + +NALI    +   V RA  VL +M+  +  + P+  T   +M+ 
Sbjct: 570 TLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMS--IAGITPNEHTYTIIMRG 627

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A +G + +A E +  I +  +K    +Y   +  C ++G  + A +V  +M+ + +  +
Sbjct: 628 YAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRN 687

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID     G V  A +++++ K  G+   I +Y+S + AC  A + Q+A ++ E
Sbjct: 688 TFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIE 747

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            M  + LKP V T   LI          + ++   +MK  GL P+  +Y  L+ +
Sbjct: 748 EMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTS 802



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 88/370 (23%), Positives = 153/370 (41%), Gaps = 47/370 (12%)

Query: 91  TLSTFNMLMSVCASSKDS------EGAFQVLRLVQEAGLKADCKLYTTLI---TTCAKSG 141
           T+ T+++L+S  A   DS      E A +++R ++E G+ A   +Y +++   T      
Sbjct: 366 TIVTYSILISGFAKINDSHQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNEN 425

Query: 142 KVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEM---------------- 180
           K   +FE +K     P  + +  L+    + G V +A  +  EM                
Sbjct: 426 KCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLI 485

Query: 181 NAEVHPVD-----------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
           N  +H  D                 PD      L++A    G +DRA  + + + K  ++
Sbjct: 486 NGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQ 545

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
            +   +   I   +  GD + A    D M + G +P  +  +ALI       KV+ A  +
Sbjct: 546 PSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSV 605

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           L +    GI+    +Y+ +M   + + +  KA E +  +K   LK  V     L+ A C 
Sbjct: 606 LDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCK 665

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
             ++   + V  +M    +  NT  Y+IL+    R+ DV     L+ Q KEDGV PN+  
Sbjct: 666 SGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHT 725

Query: 404 FKCIIGMCSR 413
           +   I  C +
Sbjct: 726 YTSYINACCK 735



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 138/321 (42%), Gaps = 15/321 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPN 89
           N  I     +    + E+M R GL     +Y+      CK     +AI    +  K    
Sbjct: 486 NGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQ 545

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P+   F  ++   A + D + A   L L++ +G       Y  LI    +  KV      
Sbjct: 546 PSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSV 605

Query: 144 -DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M    + P+   +  ++     SG + +AF+   ++      +  D      L++AC
Sbjct: 606 LDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKES--GLKLDVYIYETLLRAC 663

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPD 260
             +G++  A  V + +    I     +Y I I+  ++ GD WE A  +   M + GV P+
Sbjct: 664 CKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWE-AEDLMKQMKEDGVPPN 722

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               ++ I+    AG ++ A ++++E  + G+   + +Y++L+   +      +AL+ +E
Sbjct: 723 IHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFE 782

Query: 321 HMKSIKLKPTVSTMNALITAL 341
            MK   LKP  ++ + L+T+L
Sbjct: 783 EMKLAGLKPDEASYHCLVTSL 803



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/307 (20%), Positives = 132/307 (42%), Gaps = 16/307 (5%)

Query: 130 YTTLITTCAKSG---KVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           +  +I   AK G      A FEN     ++P+  VF +L+ A   +  +  A   + EM 
Sbjct: 300 FGLMIVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMK 359

Query: 182 AEVHPVDPDHITIGALMKACA------NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
           +E   ++   +T   L+   A       +G ++RA E+ + + +  I    +VY   ++ 
Sbjct: 360 SE--GLELTIVTYSILISGFAKINDSHQSGNMERAEELVREMEEDGIDAPIDVYHSMMHG 417

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
            +   +      V++ + + G  P  +    L++     GKV  A  I +E ++ GI   
Sbjct: 418 YTIIQNENKCLVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHN 477

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
             +YS L+    +  ++  A  ++E M    L+P  +  N LI A C    + + + +L 
Sbjct: 478 NKTYSMLINGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILE 537

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 415
            M+   + P+   +  ++       D++  L  L   +  G +P ++ +  +I    R++
Sbjct: 538 KMQKERMQPSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKH 597

Query: 416 EKARTLN 422
           +  R ++
Sbjct: 598 KVQRAVS 604



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 118/273 (43%), Gaps = 11/273 (4%)

Query: 143 VDAMFENVKPDRVVFNALITACGQS-GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           V + FE +     V +A    C QS   +D  +  L      +H  +P     G ++   
Sbjct: 252 VVSAFERIPKLSGVVSAYFPLCKQSLDVLDLTYPFL--FKKLLH--EPSRREFGLMIVYY 307

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG----V 257
           A  G    AR  ++ +    I+    V+T  ++  +   D   A S  ++M  +G    +
Sbjct: 308 AKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTI 367

Query: 258 IPDEVFLS--ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           +   + +S  A I+ +  +G +E A E+++E +  GI   I  Y S+M   +  +N  K 
Sbjct: 368 VTYSILISGFAKINDSHQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKC 427

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           L ++E +K    KP++ +   L+       ++ K + +  +M+S G+  N  TYS+L+  
Sbjct: 428 LVVFERLKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLING 487

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                D      +  +    G+ P+  ++  +I
Sbjct: 488 FIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLI 520


>gi|302769928|ref|XP_002968383.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
 gi|300164027|gb|EFJ30637.1| hypothetical protein SELMODRAFT_169661 [Selaginella moellendorffii]
          Length = 532

 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 151/363 (41%), Gaps = 50/363 (13%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS 93
           RL+++ R+ ECI  LE + + G +  + V        C        A R+  L+P+  L 
Sbjct: 120 RLLQENRVEECIRCLERLAKCGFVVKNLVKPTLCMEACARMHNTALALRYACLLPD-ILH 178

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPD 153
           + NM+M       D +  FQV + ++  G+  D   Y  LI  C + G       + +  
Sbjct: 179 SCNMIMQKFRDQGDLQSVFQVFQALESTGVLPDMYSYCILIDACGRCG-------DTEKA 231

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
             +F  L+ A    G V   +   + MNA                    +AG +     +
Sbjct: 232 TAIFEGLLKA----GTVLNVYVCNSMMNA--------------------HAGNIQHVLRL 267

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           Y+ +    I      Y I    C  + +   A  +Y+++  K +  + +    LI   G 
Sbjct: 268 YRQMQGSGIAADVTTYNIVFKACRLSKNPVLALRLYEELKAKEIKLNVLSYGTLIQIFGE 327

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           A  ++  F++ ++  + GI   +++++SL+GACS     +K L++Y+ M      P   T
Sbjct: 328 AKMLDRVFQMKRDMDSTGIVPNVVTWTSLVGACSKGALVEKTLQVYQDMVQAGCTPNAFT 387

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLG------------------LCPNTITYSILLVA 375
            N L++A  DG Q  K  ++  + K+ G                  + P+++ Y+ ++ A
Sbjct: 388 YNFLLSACVDGGQSDKAHKLFREWKTSGRILAGIEVQDESVIFSEWVRPDSVAYNTMMRA 447

Query: 376 CER 378
           C++
Sbjct: 448 CDK 450



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 110/224 (49%), Gaps = 3/224 (1%)

Query: 189 PDHI-TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           PD + +   +M+   + G +    +V++ +    +      Y I I+ C + GD E A +
Sbjct: 174 PDILHSCNMIMQKFRDQGDLQSVFQVFQALESTGVLPDMYSYCILIDACGRCGDTEKATA 233

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +++ + K G + +    +++++   HAG ++    + ++ +  GI+  + +Y+ +  AC 
Sbjct: 234 IFEGLLKAGTVLNVYVCNSMMN--AHAGNIQHVLRLYRQMQGSGIAADVTTYNIVFKACR 291

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            +KN   AL LYE +K+ ++K  V +   LI    +   L +  ++  DM S G+ PN +
Sbjct: 292 LSKNPVLALRLYEELKAKEIKLNVLSYGTLIQIFGEAKMLDRVFQMKRDMDSTGIVPNVV 351

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           T++ L+ AC +   VE  L +     + G  PN   +  ++  C
Sbjct: 352 TWTSLVGACSKGALVEKTLQVYQDMVQAGCTPNAFTYNFLLSAC 395



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/282 (19%), Positives = 117/282 (41%), Gaps = 36/282 (12%)

Query: 54  KGLLDMDKVYHARFFNVCKSQKA--IKEAFRFFKLVPNPTL----STFNMLMSVCASSKD 107
           +GLL    V +    N   +  A  I+   R ++ +    +    +T+N++   C  SK+
Sbjct: 236 EGLLKAGTVLNVYVCNSMMNAHAGNIQHVLRLYRQMQGSGIAADVTTYNIVFKACRLSKN 295

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNA 159
              A ++   ++   +K +   Y TLI    ++  +D +F+         + P+ V + +
Sbjct: 296 PVLALRLYEELKAKEIKLNVLSYGTLIQIFGEAKMLDRVFQMKRDMDSTGIVPNVVTWTS 355

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK---- 215
           L+ AC +   V++   V  +M        P+  T   L+ AC + GQ D+A ++++    
Sbjct: 356 LVGACSKGALVEKTLQVYQDMVQA--GCTPNAFTYNFLLSACVDGGQSDKAHKLFREWKT 413

Query: 216 --------------MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                         +I    ++     Y   +  C +    + A +V  +M   G+ PD+
Sbjct: 414 SGRILAGIEVQDESVIFSEWVRPDSVAYNTMMRACDKLP--KQAEAVMQEMVSSGLRPDK 471

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
                LI+  G  G  + A +  Q     GI   +++Y++++
Sbjct: 472 RSWCILINSYGCNGDKQGAVQAFQRMGKSGIIADVVAYTAII 513



 Score = 45.8 bits (107), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 63/268 (23%), Positives = 98/268 (36%), Gaps = 36/268 (13%)

Query: 264 LSALIDFAG---HAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNAKNWQKALELY 319
           L  +ID  G      +VE     L+     G  V  ++  +  M AC+   N   AL   
Sbjct: 111 LQLVIDECGRLLQENRVEECIRCLERLAKCGFVVKNLVKPTLCMEACARMHNTALALRY- 169

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
               +  L   + + N ++    D   L    +V   ++S G+ P+  +Y IL+ AC R 
Sbjct: 170 ----ACLLPDILHSCNMIMQKFRDQGDLQSVFQVFQALESTGVLPDMYSYCILIDACGRC 225

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 439
            D E    +     + G + N+             Y     +N H     +G  Q     
Sbjct: 226 GDTEKATAIFEGLLKAGTVLNV-------------YVCNSMMNAH-----AGNIQ----- 262

Query: 440 TSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCS 499
               L +YR+   +G    V   + V    +L  N  +  RL E L      L   +  +
Sbjct: 263 --HVLRLYRQMQGSGIAADVTTYNIVFKACRLSKNPVLALRLYEELKAKEIKLNVLSYGT 320

Query: 500 LIDGFGEYD--PRAFSLLEEAASFGIVP 525
           LI  FGE     R F +  +  S GIVP
Sbjct: 321 LIQIFGEAKMLDRVFQMKRDMDSTGIVP 348


>gi|449442096|ref|XP_004138818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Cucumis sativus]
 gi|449490234|ref|XP_004158545.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Cucumis sativus]
          Length = 823

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 163/334 (48%), Gaps = 11/334 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFENV 150
           T+N L+++  +      AF++   +  A    D   +  +I   AKSG++DA   +F+ +
Sbjct: 267 TYNSLITLFLNKGLPYKAFEIYESMAGAECSLDASTFELMIPCLAKSGRLDAAMKLFQEM 326

Query: 151 K-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           K     P + V+++L+ + G++G +D +  +  EM  ++  + P  +   +L+++   AG
Sbjct: 327 KEKKYRPAQNVYSSLVDSMGKAGRLDTSMKIYMEM--QLLELRPSALMFVSLIESHVKAG 384

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++D A +++  + +   K    +Y++ +   +++G  + A SV+ +M K G +P      
Sbjct: 385 KLDTALKLWDDMKRAGFKPNFGLYSMVVESHAKSGKLDVAMSVFTEMEKAGFLPIPSTYC 444

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L++    +G V+AA ++     N G+ +G+ +Y+SL+   +N K    A ++   MK++
Sbjct: 445 CLLEMQAASGHVDAAMKLYNSMTNAGLRLGLNTYTSLLTLLANKKLIDIAAKVLLEMKAM 504

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
               +VS  + L+  + +G  +   +  L  M S G+  N+     L  +C +K   E  
Sbjct: 505 GFSVSVSASDVLMVYIKEGS-VDSALRWLQFMGSSGIRTNSFIIRQLFESCMKKGMYESA 563

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
           + LL          +L+++  I+    R  E+ +
Sbjct: 564 MPLLETYVNSAAKVDLILYTSILAHLVRCQEEQK 597



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/275 (19%), Positives = 118/275 (42%), Gaps = 6/275 (2%)

Query: 144 DAMFENVKPDRVV----FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           D +  ++  D  V    +N +I    ++  ++ +F    +++     VD    T  +L+ 
Sbjct: 216 DEVVRDLSSDETVSFSAYNRVIQYLAKAEKLEVSFCCFKKIHDSGFKVDTQ--TYNSLIT 273

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              N G   +A E+Y+ +           + + I C +++G  + A  ++ +M +K   P
Sbjct: 274 LFLNKGLPYKAFEIYESMAGAECSLDASTFELMIPCLAKSGRLDAAMKLFQEMKEKKYRP 333

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
            +   S+L+D  G AG+++ + +I  E +   +    + + SL+ +   A     AL+L+
Sbjct: 334 AQNVYSSLVDSMGKAGRLDTSMKIYMEMQLLELRPSALMFVSLIESHVKAGKLDTALKLW 393

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + MK    KP     + ++ +     +L   M V ++M+  G  P   TY  LL      
Sbjct: 394 DDMKRAGFKPNFGLYSMVVESHAKSGKLDVAMSVFTEMEKAGFLPIPSTYCCLLEMQAAS 453

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
             V+  + L +     G+   L  +  ++ + + +
Sbjct: 454 GHVDAAMKLYNSMTNAGLRLGLNTYTSLLTLLANK 488


>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
 gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
          Length = 901

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 168/388 (43%), Gaps = 13/388 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLS 93
           + G +    +L+ +ME  G+     VYH+        Q   K    F +L      P++ 
Sbjct: 381 QSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSII 440

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDAMFEN- 149
           ++  L+++         A  + + ++  G+K + K Y+ LI             A+FE  
Sbjct: 441 SYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEM 500

Query: 150 ----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               ++PDR ++N LI A  + G +DRA  +L +M  E   + P +     +++  A AG
Sbjct: 501 LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKER--MQPSNRAFRPIIEGYAVAG 558

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +  A +   ++ +     T   Y   I+   +    + A SV D M+  G+ P+E   +
Sbjct: 559 DMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYT 618

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            ++     +G +  AFE   + K  G+ + +  Y +L+ AC  +   Q AL +   M   
Sbjct: 619 IIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ 678

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           K+       N LI        + +  +++  MK  G+ PN  TY+  + AC +  D++  
Sbjct: 679 KIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 738

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             ++ +  + G+ PN+  +  +I   +R
Sbjct: 739 EKVIEEMVDVGLKPNVKTYTTLIKGWAR 766



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 162/355 (45%), Gaps = 15/355 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N  ++ G++++ + + ++ME  G+   +K Y +   N          AF  F+ +     
Sbjct: 447 NLYVKIGKVAKALSISKEMESCGIKHNNKTY-SMLINGFIHLHDFANAFAIFEEMLRSGL 505

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P  + +N+L+       + + A  +L  +Q+  ++   + +  +I   A +G + +  +
Sbjct: 506 QPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALD 565

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            +         P  + +NALI    +   V RA  VL +M+  +  + P+  T   +M+ 
Sbjct: 566 TLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMS--IAGITPNEHTYTIIMRG 623

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A +G + +A E +  I +  +K    +Y   +  C ++G  + A +V  +M+ + +  +
Sbjct: 624 YAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRN 683

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID     G V  A +++++ K  G+   I +Y+S + AC  A + Q+A ++ E
Sbjct: 684 TFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIE 743

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            M  + LKP V T   LI          + ++   +MK  GL P+  +Y  L+ +
Sbjct: 744 EMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTS 798



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 148/359 (41%), Gaps = 42/359 (11%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TTCAKSGKVDAMFENVK- 151
           N++ + C S  + E A +++R ++E G+ A   +Y +++   T      K   +FE +K 
Sbjct: 374 NIIHAHCQSG-NMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKE 432

Query: 152 ----PDRVVFNALITACGQSGAVDRAFDVLAEM----------------NAEVHPVD--- 188
               P  + +  L+    + G V +A  +  EM                N  +H  D   
Sbjct: 433 CGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFAN 492

Query: 189 --------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
                         PD      L++A    G +DRA  + + + K  ++ +   +   I 
Sbjct: 493 AFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIE 552

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
             +  GD + A    D M + G +P  +  +ALI       KV+ A  +L +    GI+ 
Sbjct: 553 GYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITP 612

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
              +Y+ +M   + + +  KA E +  +K   LK  V     L+ A C   ++   + V 
Sbjct: 613 NEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVT 672

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            +M    +  NT  Y+IL+    R+ DV     L+ Q KEDGV PN+  +   I  C +
Sbjct: 673 REMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCK 731



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 138/321 (42%), Gaps = 15/321 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPN 89
           N  I     +    + E+M R GL     +Y+      CK     +AI    +  K    
Sbjct: 482 NGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQ 541

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P+   F  ++   A + D + A   L L++ +G       Y  LI    +  KV      
Sbjct: 542 PSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSV 601

Query: 144 -DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M    + P+   +  ++     SG + +AF+   ++      +  D      L++AC
Sbjct: 602 LDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKES--GLKLDVYIYETLLRAC 659

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPD 260
             +G++  A  V + +    I     +Y I I+  ++ GD WE A  +   M + GV P+
Sbjct: 660 CKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWE-AEDLMKQMKEDGVPPN 718

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               ++ I+    AG ++ A ++++E  + G+   + +Y++L+   +      +AL+ +E
Sbjct: 719 IHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFE 778

Query: 321 HMKSIKLKPTVSTMNALITAL 341
            MK   LKP  ++ + L+T+L
Sbjct: 779 EMKLAGLKPDEASYHCLVTSL 799



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 140/342 (40%), Gaps = 47/342 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAM 146
           P    F  L+   A ++D  GA   +  ++  GL+     Y+ LI+  AK   S   D +
Sbjct: 297 PNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNL 356

Query: 147 FENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F+  K      + ++++ +I A  QSG ++RA +++ EM  +                  
Sbjct: 357 FKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEED------------------ 398

Query: 202 ANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                +D   +VY  M+H Y I           N C           V++ + + G  P 
Sbjct: 399 ----GIDAPIDVYHSMMHGYTIIQNE-------NKC---------LVVFERLKECGFKPS 438

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +    L++     GKV  A  I +E ++ GI     +YS L+    +  ++  A  ++E
Sbjct: 439 IISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFE 498

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    L+P  +  N LI A C    + + + +L  M+   + P+   +  ++       
Sbjct: 499 EMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAG 558

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
           D++  L  L   +  G +P ++ +  +I    R+++  R ++
Sbjct: 559 DMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVS 600



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 117/267 (43%), Gaps = 3/267 (1%)

Query: 143 VDAMFENV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           V + FE + KP R  F  +I    + G    A      M A    ++P+     +L+ A 
Sbjct: 252 VVSAFERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRA--RGIEPNAFVFTSLVHAY 309

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A A  +  A    + +    ++ T   Y+I I+  ++  D + A +++ +   K    + 
Sbjct: 310 AVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNG 369

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  S +I     +G +E A E+++E +  GI   I  Y S+M   +  +N  K L ++E 
Sbjct: 370 IIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFER 429

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +K    KP++ +   L+       ++ K + +  +M+S G+  N  TYS+L+       D
Sbjct: 430 LKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHD 489

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
                 +  +    G+ P+  ++  +I
Sbjct: 490 FANAFAIFEEMLRSGLQPDRAIYNLLI 516


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 177/395 (44%), Gaps = 54/395 (13%)

Query: 30  HSYNRLIRQ----GRISECIDLLEDMERK-GLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           ++Y  L+R     G +   +DLL +ME++ G+     +Y+     +CKS K + EA    
Sbjct: 19  YTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGK-VPEAMEVV 77

Query: 85  KLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TT 136
           K + +    P + TFN L++ +C + +  E A QVL  ++ +G  A+   Y TLI   ++
Sbjct: 78  KNMKDGACKPDVVTFNTLIAGLCKAGRLDE-AQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 137 CAKSGKVDAMFENVK--PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
             +SG+   + + +   PD   +NA+I    +SG +DRA+  L EM        PD  T 
Sbjct: 137 AGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAG-CSPDTFTY 195

Query: 195 GALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             L+     +  + +A E+ + MI + +             CC+                
Sbjct: 196 SILINGLCKSSNLRKADELLQEMIGRKD-------------CCASV-------------- 228

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
                   V  + L+D    A  ++ A E+L      G +  +++YS+++       +  
Sbjct: 229 --------VAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVD 280

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           K   L E M S   KP V T   L+T LC   ++ +   ++  M   G  PN +TYS++ 
Sbjct: 281 KGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVF 340

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
               + D +++   LL+  ++ G I ++V F+ ++
Sbjct: 341 DGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALL 375


>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 125/527 (23%), Positives = 210/527 (39%), Gaps = 65/527 (12%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ----KAIKEA 80
           +H +  LIR    +GR+   + LL++M+   L D D V     +NVC         +  A
Sbjct: 203 VHLFTTLIRGFAKEGRVDSALSLLDEMKSSSL-DADIV----LYNVCIDSFGKVGKVDMA 257

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTLIT 135
           ++FF  +      P   T+  ++ V   +   + A ++   + E   +  C   Y T+I 
Sbjct: 258 WKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHL-EKNRRVPCTYAYNTMIM 316

Query: 136 TCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
               +GK D  +  ++        P  + +N ++T   + G VD A  V  EM  +  P 
Sbjct: 317 GYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAP- 375

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN----CCSQTGDWE 243
             +  T   L+     AG++D A E+   + K  +   P V T+ I     C SQ  D  
Sbjct: 376 --NLSTYNILIDMLCRAGKLDCAFELRDSMQKAGL--FPNVRTVNIMVDRLCKSQKLDE- 430

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            AC++++ M  K   PDE+   +LID  G  G+V+ A++I ++  +       I Y+SL+
Sbjct: 431 -ACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLI 489

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
               N    +   ++Y+ M +    P +  +N  +  +    +  K   +  ++KS    
Sbjct: 490 KNFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFV 549

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLN 422
           P+  +YSIL+    +         L    KE G + +   +  +I G C     K   +N
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFC-----KCGKVN 604

Query: 423 EHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLV 482
           +                   A  +  E    G  PTV     V+  L      D    L 
Sbjct: 605 K-------------------AYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLF 645

Query: 483 ENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVPCV 527
           E        L      SLIDGFG+      A+ +LEE    G+ P V
Sbjct: 646 EEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNV 692



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 93/436 (21%), Positives = 181/436 (41%), Gaps = 54/436 (12%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D +  L +YN LI    R G++    +L + M++ GL    +  +     +CKSQK + E
Sbjct: 372 DAAPNLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQK-LDE 430

Query: 80  AFRFFKL----VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A   F+     V  P   TF  L+         + A+++   + ++  + +  +YT+LI 
Sbjct: 431 ACAIFEQMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKIYEKMLDSDCRTNSIVYTSLIK 490

Query: 136 TCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
                G+         D + +N  PD  + N  +    ++G  ++   +  E+ +     
Sbjct: 491 NFFNHGRKEDGHKIYKDMVNQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFV- 549

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            PD  +   L+     AG  +   E++  + +         Y I I+   + G    A  
Sbjct: 550 -PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQ 608

Query: 248 VYDDMTKKGVIP------------------DEVFL-----------------SALIDFAG 272
           + ++M  KG  P                  DE ++                 S+LID  G
Sbjct: 609 LLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
             G+++ A+ IL+E   +G++  + +++SL+ A   A+   +AL  ++ MK +K  P   
Sbjct: 669 KVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQV 728

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T   LI  LC   +  K      +M+  G+ P+TI+Y+ ++    +  ++     L  + 
Sbjct: 729 TYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRF 788

Query: 393 KEDGVIPNLVMFKCII 408
           K +G +P+   +  +I
Sbjct: 789 KANGGVPDSACYNAMI 804



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/347 (20%), Positives = 138/347 (39%), Gaps = 26/347 (7%)

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
           ++ +C ++  +   FDV+  M        P       L+ A +     D    +++ + +
Sbjct: 139 MVLSCVKANKLREGFDVVQNMRK--FKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQE 196

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
              + T  ++T  I   ++ G  + A S+ D+M    +  D V  +  ID  G  GKV+ 
Sbjct: 197 LGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDM 256

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A++   E +  G+    ++Y+S++G    A    +A+E++EH++  +  P     N +I 
Sbjct: 257 AWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIM 316

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
                 +  +   +L   ++ G  P+ I Y+ +L    +   V+  L +  + K+D   P
Sbjct: 317 GYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAA-P 375

Query: 400 NLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTV 459
           NL  +  +I M  R                +G+          A  +      AG  P V
Sbjct: 376 NLSTYNILIDMLCR----------------AGK-------LDCAFELRDSMQKAGLFPNV 412

Query: 460 EVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 506
             V+ ++  L      D    + E +            CSLIDG G+
Sbjct: 413 RTVNIMVDRLCKSQKLDEACAIFEQMDYKVCTPDEITFCSLIDGLGK 459



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 69/333 (20%), Positives = 147/333 (44%), Gaps = 18/333 (5%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +A+ E  +  + VP+    ++++L+     +  +   +++   ++E G   D + Y  +I
Sbjct: 537 RAMFEEIKSRRFVPDA--RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVI 594

Query: 135 TTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               K GKV+  ++          +P  V + ++I    +   +D A+ +  E  A+   
Sbjct: 595 DGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE--AKSKR 652

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIA--INCCSQTGDWE 243
           ++ + +   +L+      G++D   E Y ++ +   KG TP VYT    ++   +  +  
Sbjct: 653 IELNVVIYSSLIDGFGKVGRID---EAYLILEELMQKGLTPNVYTWNSLLDALVKAEEIN 709

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A   +  M +    P++V    LI+      K   AF   QE + QG+    ISY++++
Sbjct: 710 EALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMI 769

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
              + A N  +A  L++  K+    P  +  NA+I  L +G++      +  + +  GL 
Sbjct: 770 SGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLH 829

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
            +  T  +LL    + D +E   ++ +  +E G
Sbjct: 830 IHNKTCVVLLDTLHKNDCLEQAAIVGAVLRETG 862


>gi|218200855|gb|EEC83282.1| hypothetical protein OsI_28637 [Oryza sativa Indica Group]
          Length = 662

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 144/353 (40%), Gaps = 25/353 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L R  R+   + +  +M  +G+   D +  A    +CK  K  +    +FK        T
Sbjct: 197 LQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAVGIWFK--------T 248

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAM 146
            N         K  + A +V++ +   G++ D   Y  +I  C K  K+        D  
Sbjct: 249 LN-------KGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMT 301

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
               KPD   FN L+ A    G ++  F +L +M  E   + PD ++ G ++     A  
Sbjct: 302 RRGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTE--GLQPDIVSYGTIIDGHCKAKD 359

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           + +A+E    +    +K    +Y   I    + GD   A    + M   G+ P  V   +
Sbjct: 360 IRKAKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGS 419

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           L+ +  HAG VE A  I  +A+   + +G+I Y+ ++          +A+  +E M+S  
Sbjct: 420 LMYWMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMIQGYCKLGKMVEAVAYFEEMRSRG 479

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + P   T   L+ A        +  ++  +M   G+ P+ ITY  L+  C  K
Sbjct: 480 ISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIPDNITYGTLIARCSEK 532



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 116/519 (22%), Positives = 206/519 (39%), Gaps = 88/519 (16%)

Query: 22  AHDVSEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           + +V+   +SY  +I+     G++    ++L ++ R GL      Y+     +CKS + +
Sbjct: 4   SRNVALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCKSGR-V 62

Query: 78  KEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           +EAFR    +      P++ TF +L++  A  +       VL+ +++ G+  +  +Y  L
Sbjct: 63  EEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGIVLQEMEQLGVSPNEVIYNEL 122

Query: 134 ITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEM---NA 182
           I    + G          + + + +KP  V +N +  A  + G ++RA  +L +M     
Sbjct: 123 IGWHCRKGHCSQALRLFDEMVLKKMKPTAVTYNLIAKALCKEGEMERAERILEDMLSIGM 182

Query: 183 EVH----------------------------------PVDP--------------DHITI 194
            VH                                  P DP                  +
Sbjct: 183 TVHCGLFNTVVAWLLQRTRRLESVVSITNEMVTRGMRPNDPLMTACMRELCKGGKHQEAV 242

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           G   K       +  A +V + +    I+     Y I I  C +    E A  ++ DMT+
Sbjct: 243 GIWFKTLNKGKYMKEATKVIQTMLNKGIELDSITYNIMIRGCCKDSKMEEAIKLHGDMTR 302

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           +G  PD    + L+    + GK+E  F +L + K +G+   I+SY +++     AK+ +K
Sbjct: 303 RGFKPDLFTFNTLLHAYCNLGKMEETFHLLDQMKTEGLQPDIVSYGTIIDGHCKAKDIRK 362

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A E    +    LKP V   NALI        +   ++ +  MKS G+ P  +TY  L+ 
Sbjct: 363 AKEYLTELMDRGLKPNVFIYNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMY 422

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 434
                  VE    + SQA+E+ V   ++ +  +I    + Y K   + E V  F   R +
Sbjct: 423 WMCHAGLVEEAKTIFSQARENNVDLGVIGYTIMI----QGYCKLGKMVEAVAYFEEMRSR 478

Query: 435 --IENKWTSLALM--------------VYREAIVAGTIP 457
               NK T   LM              ++ E + +G IP
Sbjct: 479 GISPNKLTYTTLMYAYSKSGNSEEASKLFDEMVGSGVIP 517



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 77/147 (52%), Gaps = 7/147 (4%)

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           ++E++N  +++   SY++++ A   A       E+   +    L+PTV T N L+ ALC 
Sbjct: 1   MRESRN--VALNEYSYTAMIKALCKAGKVDAGFEMLAELWRAGLQPTVVTYNVLMDALCK 58

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLMLLSQAKEDGVIPNLV 402
             ++ +   +   M+  G+ P+ +T+ IL+    R +   EVG+ +L + ++ GV PN V
Sbjct: 59  SGRVEEAFRLKGRMEQGGMTPSVVTFGILINGLARGERFGEVGI-VLQEMEQLGVSPNEV 117

Query: 403 MFKCIIGMCSRR---YEKARTLNEHVL 426
           ++  +IG   R+    +  R  +E VL
Sbjct: 118 IYNELIGWHCRKGHCSQALRLFDEMVL 144



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 19/155 (12%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN LI    R G IS  ID +E M+  G+   +  Y +  + +C +   ++EA   F   
Sbjct: 382 YNALIGGYGRNGDISGAIDAVETMKSNGIQPTNVTYGSLMYWMCHA-GLVEEAKTIFSQA 440

Query: 88  --PNPTLSTFN---MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG- 141
              N  L       M+   C   K  E A      ++  G+  +   YTTL+   +KSG 
Sbjct: 441 RENNVDLGVIGYTIMIQGYCKLGKMVE-AVAYFEEMRSRGISPNKLTYTTLMYAYSKSGN 499

Query: 142 --KVDAMFE-----NVKPDRVVFNALITACGQSGA 169
             +   +F+      V PD + +  LI  C + G 
Sbjct: 500 SEEASKLFDEMVGSGVIPDNITYGTLIARCSEKGG 534


>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like, partial [Cucumis sativus]
          Length = 594

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 184/419 (43%), Gaps = 23/419 (5%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N LI      G   E + + + M   G+   D V H    +  KS     +A  +F+L
Sbjct: 7   TFNNLINACGSCGNWREALRVCKKMTDNGV-GPDLVTHNIVLSAYKSGAQYSKALSYFEL 65

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQE--AGLKADCKLYTTLITTCAKS 140
           +      P  +T N+++      K    A ++   ++E  +  + D   +T++I   +  
Sbjct: 66  MKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVR 125

Query: 141 GKVD---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+++   A+F     E +KP+ V +NALI+A    G    AF V  EM        PD +
Sbjct: 126 GQIEDCKAVFSTMLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRS--GFCPDVV 183

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +  +L+     + Q  RAREV+ M+ +   K     Y   ++     G    A  +  +M
Sbjct: 184 SYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREM 243

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            + G+ P+ V +  L+   G  G+      +L  A+ +GI +  I+ +S +G+  N   +
Sbjct: 244 EQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEY 303

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +KA+ LY  M++   KP   T   LI+  C   +  + +    +M  L +  ++  YS +
Sbjct: 304 EKAINLYRSMENKTTKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSM 363

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM--CSRRYEKARTLNEHVLSFN 429
           + A  ++  +     L +  K  G  P+LV +  +I     S  +EK   L + + + N
Sbjct: 364 ICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANN 422



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 152/342 (44%), Gaps = 45/342 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDAM 146
           P+ STFN L++ C S  +   A +V + + + G+  D   +  +++   + A+  K  + 
Sbjct: 3   PSRSTFNNLINACGSCGNWREALRVCKKMTDNGVGPDLVTHNIVLSAYKSGAQYSKALSY 62

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE     N++PD    N +I    +     +A ++ + M  +     PD +T  ++    
Sbjct: 63  FELMKGTNIRPDTTTLNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSI---- 118

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                          IH Y+++G             Q  D +   +V+  M  +G+ P+ 
Sbjct: 119 ---------------IHLYSVRG-------------QIEDCK---AVFSTMLAEGIKPNI 147

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  +ALI      G  + AF +  E K  G    ++SY+SL+     ++   +A E+++ 
Sbjct: 148 VSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDM 207

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK  K KP + + NAL+ A      LP+ +++L +M+  G+ PN ++   LL AC R   
Sbjct: 208 MKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQ 267

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 421
                 +LS A+  G+  N +     IG  M    YEKA  L
Sbjct: 268 KVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINL 309



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 94/437 (21%), Positives = 173/437 (39%), Gaps = 52/437 (11%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  +   + SYN LI      G   E   + ++M+R G       Y +      +SQ+  
Sbjct: 140 AEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPA 199

Query: 78  K--EAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +  E F   K     P L ++N LM    S+     A  +LR +++ G+  +     TL+
Sbjct: 200 RAREVFDMMKRNKCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLL 259

Query: 135 TTCAKSGK---VDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
             C + G+   +D++        +  + +  N+ I +    G  ++A ++   M  E   
Sbjct: 260 AACGRFGQKVNIDSVLSAAELRGIHLNTIACNSAIGSYMNIGEYEKAINLYRSM--ENKT 317

Query: 187 VDPDHITIGALMKACANAGQVDRA---------------REVYK-MIHKYNIKG------ 224
             PD +T   L+  C    + + A                E+Y  MI  Y+ +G      
Sbjct: 318 TKPDSVTFTILISGCCRMSKYEEALCFFKEMLDLRIPLSSEIYSSMICAYSKQGQLVKAE 377

Query: 225 -----------TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
                       P++  YT  IN  S +  WE  C++Y +M    +  D +  SAL+   
Sbjct: 378 SLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEANNIQLDSIACSALMKAF 437

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
               +      + +  K +GI     ++  ++ ACS  ++W+KA +L   M+      ++
Sbjct: 438 NKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSILRDWRKATDLINLMEPSFHLVSL 497

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T+N L+  L    +    +++     +LG   N  TYSILL            + +L  
Sbjct: 498 GTINHLLQFLGKSGKTEIMIKLFYRFVALGSSVNINTYSILLKNLLSAGKWRKYIEVLQW 557

Query: 392 AKEDGVIPNLVMFKCII 408
             + G+ P+  M+  I+
Sbjct: 558 MNDAGIQPSHAMYNNIL 574


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 112/517 (21%), Positives = 212/517 (41%), Gaps = 56/517 (10%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVP-NPTLST 94
           G+  +   L+++M RKG +     Y      +C + K +++AF  F   K+V   P + T
Sbjct: 267 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATK-VEKAFLLFQEMKMVGVTPDVYT 325

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFENV- 150
           + +L+     +   E A  +   ++  G       YT LI    K+ +V   + +F  + 
Sbjct: 326 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 385

Query: 151 ----KPDRVVFNALITACGQSGAVDRAFDVLAEMNA--------------EVHPVDPDHI 192
               +P+ V + AL+    ++G + +AF+V A++                + H + P+ +
Sbjct: 386 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 445

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T GAL+     A +VD A E+   +     +    VY   I+   + G  + A  V+  M
Sbjct: 446 TYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQM 505

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
           TK G +P     ++LID     G+++ A ++L +      +  +++Y++++         
Sbjct: 506 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 565

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +KAL+L   M+     P V T  ALI  L    ++  ++++ + M   G  PN +TY +L
Sbjct: 566 EKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 625

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
           +        ++   +LL + K+      L  ++C I   S+ +  +  + E + S+    
Sbjct: 626 INHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESY---- 681

Query: 433 PQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADAL 492
                                GT+P   V   ++ C       +I   L + +     ++
Sbjct: 682 ---------------------GTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSV 720

Query: 493 KRSN--LCSLIDG--FGEYDPRAFSLLEEAASFGIVP 525
           K  N    SLI           AF L  E    G VP
Sbjct: 721 KTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVP 757



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 10/235 (4%)

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT----IGAL--MK 199
           M E   P+  +FN+L+ +         A+ +L  M     P  P ++     IG++   +
Sbjct: 169 MTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCP--PGYVVYNIFIGSICGQE 226

Query: 200 ACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              +   +D A ++Y +M+    +     V   A  C    G ++ A  +  +M +KG +
Sbjct: 227 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFA-RCLCGVGKFDKAFQLIKEMMRKGFV 285

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD    S +I F  HA KVE AF + QE K  G++  + +Y+ L+ +   A   ++A  L
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 345

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +E M+S+   PTV T  ALI A     Q+P+  ++   M   G  PN +TY  L+
Sbjct: 346 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 400



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 87/412 (21%), Positives = 162/412 (39%), Gaps = 41/412 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L ++GR ++ +D++E  + K    +D V      +         EA  F  ++  N   P
Sbjct: 85  LCKEGRWADALDMIEREDFK----LDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIP 140

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            + T+  L+S     K      +++ ++   G   +  L+ +L+ +          ++  
Sbjct: 141 NVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLL 200

Query: 149 ------NVKPDRVVFNALI-TACGQS-----GAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                    P  VV+N  I + CGQ        +D A  +  EM A    ++   + +  
Sbjct: 201 NRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLN--KVNVAN 258

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
             +     G+ D+A ++ K + +         Y+  I         E A  ++ +M   G
Sbjct: 259 FARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVG 318

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V PD    + LID    AG +E A  + +E ++ G S  +++Y++L+ A   AK   +A 
Sbjct: 319 VTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAN 378

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG--------------- 361
           +++  M     +P   T  AL+  LC    + K  EV + +                   
Sbjct: 379 DIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRH 438

Query: 362 -LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            L PN +TY  L+    +   V+    LL      G  PN +++  +I G C
Sbjct: 439 TLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFC 490



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/369 (20%), Positives = 146/369 (39%), Gaps = 49/369 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAM-- 146
           P+  T+N L+ V +S+   +  F+V + + E+G   D            K G+  DA+  
Sbjct: 38  PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADALDM 97

Query: 147 --FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
              E+ K D V+   +I+   ++   D A   L  M    +   P+ +T   L+      
Sbjct: 98  IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRC--NSCIPNVVTYRTLLSGFLKK 155

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD---- 260
            Q+   + +  M+        P ++   ++      D+ +A  + + MT  G  P     
Sbjct: 156 KQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVY 215

Query: 261 EVFLSA-----------LIDFAGH--------------------------AGKVEAAFEI 283
            +F+ +           L+D A                             GK + AF++
Sbjct: 216 NIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQL 275

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           ++E   +G      +YS ++    +A   +KA  L++ MK + + P V T   LI + C 
Sbjct: 276 IKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCK 335

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
              + +   +  +M+S+G  P  +TY+ L+ A  +   V     +  +  + G  PN V 
Sbjct: 336 AGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVT 395

Query: 404 FKCII-GMC 411
           +  ++ G+C
Sbjct: 396 YGALVDGLC 404



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 140/339 (41%), Gaps = 27/339 (7%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--A 76
           H ++  + +Y  L+    +  ++    +LL+ M   G      VY A     CK+ K  +
Sbjct: 438 HTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDS 497

Query: 77  IKEAF-RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            +E F +  K    P++ T+  L+         + A +VL  + +     +   YT +I 
Sbjct: 498 AQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMID 557

Query: 136 TCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
              + G+ +   +           P+ V + ALI   G++G +D + D+  +M+ +    
Sbjct: 558 GLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRK--GC 615

Query: 188 DPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
            P+++T   L+     AG +D+AR +  +M   Y  K     Y     C  Q     F  
Sbjct: 616 SPNYVTYRVLINHLCAAGLLDKARLLLGEMKQTYWPK-----YLQGYRCAIQGFSKSFIA 670

Query: 247 S--VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS--YSSL 302
           S  + ++M   G +P       LID    AG++E A E+ +E      SV   +  Y+SL
Sbjct: 671 SLGILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASL 730

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           + A   A   ++A  LY  M      P +S    LI  L
Sbjct: 731 IQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGL 769



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 78/380 (20%), Positives = 136/380 (35%), Gaps = 77/380 (20%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           +P +V +NAL+     +G VD  F V  EM+     +  D  T+G    A    G   R 
Sbjct: 37  RPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCM--DRFTVGCFAHALCKEG---RW 91

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            +   MI + + K    + T  I+   +   ++ A S    M     IP+ V    L+  
Sbjct: 92  ADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLL-- 149

Query: 271 AGHAGKVEAAF--EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +G   K +  +   I+     +G +     ++SL+ +  N K++  A +L   M +    
Sbjct: 150 SGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCP 209

Query: 329 PTVSTMNALITALCDGDQLP---------------------------------------- 348
           P     N  I ++C  ++LP                                        
Sbjct: 210 PGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKF 269

Query: 349 -KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            K  +++ +M   G  P+T TYS ++        VE   +L  + K  GV P++  +  +
Sbjct: 270 DKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTIL 329

Query: 408 IGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTV----EVVS 463
           I                  SF       + +W      ++ E    G  PTV     ++ 
Sbjct: 330 ID-----------------SFCKAGLIEQAQW------LFEEMRSVGCSPTVVTYTALIH 366

Query: 464 KVLGCLQLPYNADIRERLVE 483
             L   Q+P   DI  R+V+
Sbjct: 367 AYLKAKQVPQANDIFHRMVD 386



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 129/325 (39%), Gaps = 40/325 (12%)

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
            C    GD E      D +   G  P +V  +AL+     AG+V+  F + +E    G  
Sbjct: 19  TCSHAAGDSE------DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFC 72

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
           +   +      A      W  AL++ E  +  KL   + T   +I+ L +     + M  
Sbjct: 73  MDRFTVGCFAHALCKEGRWADALDMIER-EDFKLDTVLCT--HMISGLMEASYFDEAMSF 129

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
           L  M+     PN +TY  LL    +K  +     +++    +G  PN  +F  ++   C+
Sbjct: 130 LHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCN 189

Query: 413 RR-YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 471
            + Y  A  L   + +   G P           +VY   I  G+I   E        L  
Sbjct: 190 EKDYAYAYKLLNRMTT--CGCPP--------GYVVYN--IFIGSICGQEK-------LPS 230

Query: 472 PYNADIRERLVENLGVSADALKRSNLCSL---IDGFGEYDPRAFSLLEEAASFGIVPCVS 528
           P   D+ E++   +  +   L + N+ +    + G G++D +AF L++E    G VP  S
Sbjct: 231 PDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFD-KAFQLIKEMMRKGFVPDTS 289

Query: 529 F--KEIPVVVDARKLEIHTAKVYLL 551
              K I  +  A K+E    K +LL
Sbjct: 290 TYSKVITFLCHATKVE----KAFLL 310


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 144/328 (43%), Gaps = 13/328 (3%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC---AKSGKVDAMFENV-- 150
           ++L   C + +  E    +L    E G   D   Y  L+ +     KSG+ D +   +  
Sbjct: 117 HLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAE 176

Query: 151 -----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                 PD V +N +I    + G V++A D+  EM     P  PD +T  +++ A   A 
Sbjct: 177 GGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIP--PDLVTYNSVVHALCKAR 234

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +D+A    + +    +      Y   I   S TG W+ A  V+ +M +  ++PD V LS
Sbjct: 235 AMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLS 294

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+      GK++ A ++      +G +  + SY+ ++   +         +L++ M   
Sbjct: 295 MLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD 354

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            + P   T N  I A  +   L K M + ++M+  G+ P+ +TY  ++ A  R   ++  
Sbjct: 355 GIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDA 414

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCS 412
           +   +Q  + GV P+   + C+I G C+
Sbjct: 415 MEKFNQMIDQGVAPDKYAYNCLIQGFCT 442



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 62/278 (22%), Positives = 115/278 (41%), Gaps = 16/278 (5%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA- 145
           V +P +  +N ++       D   A  + + + + G+  D   Y +++    K+  +D  
Sbjct: 180 VCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKA 239

Query: 146 -------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                  + + V P+   +N LI     +G    A  V  EM    H + PD +T+  LM
Sbjct: 240 EAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRR--HSILPDVVTLSMLM 297

Query: 199 KACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKK 255
            +    G++  AR+V+  +    +KG  P+V  Y I +N  +  G       ++D M   
Sbjct: 298 GSLCKYGKIKEARDVFDTMA---MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGD 354

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G+ PD    +  I    + G ++ A  I  E ++ G+   +++Y +++ A         A
Sbjct: 355 GIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDA 414

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
           +E +  M    + P     N LI   C    L KT  +
Sbjct: 415 MEKFNQMIDQGVAPDKYAYNCLIQGFCTHGILLKTQGI 452


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 174/384 (45%), Gaps = 17/384 (4%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCK--SQKAIKEAFRFF--KLVPNPTL 92
           +G+I + ++  + +   G   +D+V +    N +CK    +A  E  R    KLV    +
Sbjct: 153 KGQIHQALNFHDKLVALGF-HLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVV 211

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM----- 146
               ++ S+C   K+   AF +   +    + ++   Y+ LI+     GK+ DA+     
Sbjct: 212 MYSTIIDSMC-KDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNK 270

Query: 147 --FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
              EN+ PD   FN L+ A  + G V  A + LA M  +   + PD +T  +LM      
Sbjct: 271 MTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQ--GIKPDIVTYNSLMDGYCLV 328

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
            +V+ A+ +   +    +  T   Y I IN   +    + A  ++ +M  K + P+ +  
Sbjct: 329 NEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITY 388

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++LID    +G++  A E++    ++G    II+YSS++ A        KA+ L   +K 
Sbjct: 389 NSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKD 448

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             ++P + T   LI  LC G +L     +  D+   G      TY++++         + 
Sbjct: 449 QGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDE 508

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII 408
            L LLS+ K++  IP+ + ++ II
Sbjct: 509 ALSLLSKMKDNSCIPDAITYEIII 532



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 155/317 (48%), Gaps = 16/317 (5%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFEN--------VKPDRVVFNALITACGQSGAVDRA 173
           G   D   Y TLI    K G+  A  E         V+ D V+++ +I +  +   V+ A
Sbjct: 170 GFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDA 229

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--I 231
           FD+ +EM +    +  + +T  AL+      G++  A  ++  +   NI   P+VYT  I
Sbjct: 230 FDLYSEMVSR--RISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENIN--PDVYTFNI 285

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            ++   + G  + A +    M K+G+ PD V  ++L+D      +V  A  IL    ++G
Sbjct: 286 LVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRG 345

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           ++  + SY+ ++      K   +A++L++ M   ++ P V T N+LI  LC   ++   +
Sbjct: 346 VTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYAL 405

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
           E++  M   G  P+ ITYS +L A  +   V+  + LL + K+ G+ PN+  +  +I G+
Sbjct: 406 ELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGL 465

Query: 411 C-SRRYEKARTLNEHVL 426
           C   R E AR + E +L
Sbjct: 466 CKGGRLEDARNIFEDLL 482



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 118/266 (44%), Gaps = 3/266 (1%)

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
           +  +KP+ V FN LI    Q G +  AF VLA++    +  +PD IT+   +K     GQ
Sbjct: 98  YRGIKPNFVNFNILINCFCQLGLIPFAFSVLAKILKMGY--EPDTITLNTFIKGFCLKGQ 155

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           + +A   +  +           Y   IN   + G+   A  +   +  K V  D V  S 
Sbjct: 156 IHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYST 215

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           +ID       V  AF++  E  ++ IS  I++YS+L+         + A+ L+  M S  
Sbjct: 216 IIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSEN 275

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           + P V T N L+ A C   ++ +    L+ M   G+ P+ +TY+ L+      ++V +  
Sbjct: 276 INPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAK 335

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMC 411
            +L+     GV   +  +  +I G C
Sbjct: 336 SILNTMSHRGVTATVRSYNIVINGFC 361



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/263 (21%), Positives = 110/263 (41%), Gaps = 37/263 (14%)

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
           +P  PD +  G ++ +   +        +++ +    IK     + I INC  Q G   F
Sbjct: 65  NPTPPD-MEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNILINCFCQLGLIPF 123

Query: 245 ACSVYDDMTKKGVIPDEVFLS-----------------------------------ALID 269
           A SV   + K G  PD + L+                                    LI+
Sbjct: 124 AFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLIN 183

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G+  AA E+L+    + + + ++ YS+++ +    KN   A +LY  M S ++  
Sbjct: 184 GLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISS 243

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            + T +ALI+  C   +L   + + + M S  + P+  T++IL+ A  ++  V+     L
Sbjct: 244 NIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGL 303

Query: 390 SQAKEDGVIPNLVMFKCII-GMC 411
           +   + G+ P++V +  ++ G C
Sbjct: 304 AMMMKQGIKPDIVTYNSLMDGYC 326



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 78/412 (18%), Positives = 174/412 (42%), Gaps = 70/412 (16%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC-----K 72
           + +++  ++++N L+    ++GR+ E  + L  M ++G+      Y++     C      
Sbjct: 273 SENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVN 332

Query: 73  SQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
             K+I        +    T+ ++N++++     K  + A ++ + +    +  +   Y +
Sbjct: 333 MAKSILNTMSHRGVTA--TVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNS 390

Query: 133 LITTCAKSGKVDAMFENV--------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           LI    KSG++    E +        +PD + +++++ A  ++  VD+A  +L ++  + 
Sbjct: 391 LIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQ- 449

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYK--MIHKYNIKGTPEVYTIAINCCSQTGDW 242
             + P+  T   L+      G+++ AR +++  ++  YN+  T   YT+ I      G +
Sbjct: 450 -GIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNL--TVNTYTVMIQGFCSHGLF 506

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS-- 300
           + A S+   M     IPD +    +I       + + A ++L+E   +G+    + Y   
Sbjct: 507 DEALSLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSW 566

Query: 301 --SLMGA-----------CSNAK---NWQKAL--ELY-------EHMK-------SIKLK 328
             S M A           C++++   NW K L   +Y        +M+       S+ + 
Sbjct: 567 SLSFMAAPAHFLNNDSLQCTSSQESGNWAKLLLERIYCDCVLTKSNMRDKDVECPSVIIY 626

Query: 329 PT-----------VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
            T           V+T   +I   C      +++ +LS M+  G  P+ +TY
Sbjct: 627 STCDWSKQGYILDVNTYTVMIQGFCSHGLFDESLALLSKMEVNGCIPDAVTY 678


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 147/328 (44%), Gaps = 31/328 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P  ST++ +++    +   E AF + + ++  G+  D   YT LI +  K+G ++    +
Sbjct: 455 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 514

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKA 200
           FE ++     P  V + ALI A  ++  V +A D+   M +A   P D   +T GAL+  
Sbjct: 515 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPND---VTYGALVDG 571

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              AG + +A EVY       + GT +         S   D+ F C       +  + P+
Sbjct: 572 LCKAGNISKAFEVYA-----KLIGTSD---------SADSDFYFPCE-----DRHTLAPN 612

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V   AL+D    A KV+ A E+L    + G     I Y +L+     A     A E++ 
Sbjct: 613 VVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFL 672

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M      P+V T  +LI  +    +L   M+VLS M      PN +TY+ ++    R  
Sbjct: 673 QMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIG 732

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + E  L LLS  +E G  PN+V +  +I
Sbjct: 733 ESEKALKLLSLMEEKGCSPNVVTYTALI 760



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 147/353 (41%), Gaps = 33/353 (9%)

Query: 90  PTLSTFNMLM-SVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS----GKV 143
           P    +N+ + S+C   K  S     +   +    L A+C L    +   A+     GK 
Sbjct: 379 PGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKF 438

Query: 144 DAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D  F+ +K        PD   ++ +IT    +  V++AF +  EM  ++  V PD  T  
Sbjct: 439 DKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEM--KMVGVTPDVYTYT 496

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            L+ +   AG +++A+ +++ +       T   YT  I+   +      A  ++  M   
Sbjct: 497 ILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDA 556

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQE----------------AKNQGISVGIISY 299
           G  P++V   AL+D    AG +  AFE+  +                     ++  +++Y
Sbjct: 557 GCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTY 616

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
            +L+     A     A EL + M S   +P     +ALI   C   ++    EV   M  
Sbjct: 617 GALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTK 676

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            G  P+  TY+ L+    +   +++ + +LSQ  +D   PN+V +  +I G+C
Sbjct: 677 CGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLC 729



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 10/235 (4%)

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           M E   P+  +FN+L+ +         A+ +L  M     P  P ++     + +     
Sbjct: 338 MTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCP--PGYVVYNIFIGSICGQE 395

Query: 206 QV------DRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           ++      D A ++Y +M+    +     V   A  C    G ++ A  +  +M +KG +
Sbjct: 396 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFA-RCLCGVGKFDKAFQLIKEMMRKGFV 454

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD    S +I F  HA KVE AF + QE K  G++  + +Y+ L+ +   A   ++A  L
Sbjct: 455 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 514

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +E M+S+   PTV T  ALI A     Q+P+  ++   M   G  PN +TY  L+
Sbjct: 515 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 569



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 83/361 (22%), Positives = 149/361 (41%), Gaps = 62/361 (17%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVP-NPTLST 94
           G+  +   L+++M RKG +     Y      +C + K +++AF  F   K+V   P + T
Sbjct: 436 GKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATK-VEKAFLLFQEMKMVGVTPDVYT 494

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFENV- 150
           + +L+     +   E A  +   ++  G       YT LI    K+ +V   + +F  + 
Sbjct: 495 YTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMV 554

Query: 151 ----KPDRVVFNALITACGQSGAVDRAFDVLAEMNA--------------EVHPVDPDHI 192
               +P+ V + AL+    ++G + +AF+V A++                + H + P+ +
Sbjct: 555 DAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVV 614

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T GAL+     A +VD A E                                   + D M
Sbjct: 615 TYGALVDGLCKAHKVDHAHE-----------------------------------LLDAM 639

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
              G  P+ +   ALID    AGK+++A E+  +    G    + +Y+SL+         
Sbjct: 640 LSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRL 699

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
             A+++   M      P V T  A+I  LC   +  K +++LS M+  G  PN +TY+ L
Sbjct: 700 DLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTAL 759

Query: 373 L 373
           +
Sbjct: 760 I 760



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 78/385 (20%), Positives = 152/385 (39%), Gaps = 49/385 (12%)

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A++E  R       P+  T+N L+ V +S+   +  F+V + + E+G   D       
Sbjct: 191 NEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCF 250

Query: 134 ITTCAKSGK-VDAM----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
                K G+  DA+     E+ K D V+   +I+   ++   D A   L  M    +   
Sbjct: 251 AHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRC--NSCI 308

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ +T   L+       Q+   + +  M+        P ++   ++      D+ +A  +
Sbjct: 309 PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 368

Query: 249 YDDMTKKGVIPD----EVFLSA-----------LIDFAGH-------------------- 273
            + MT  G  P      +F+ +           L+D A                      
Sbjct: 369 LNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANF 428

Query: 274 ------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
                  GK + AF++++E   +G      +YS ++    +A   +KA  L++ MK + +
Sbjct: 429 ARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGV 488

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P V T   LI + C    + +   +  +M+S+G  P  +TY+ L+ A  +   V     
Sbjct: 489 TPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAND 548

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMC 411
           +  +  + G  PN V +  ++ G+C
Sbjct: 549 IFHRMVDAGCRPNDVTYGALVDGLC 573



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 85/368 (23%), Positives = 148/368 (40%), Gaps = 38/368 (10%)

Query: 195 GALMKACANAGQVD-RAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYD 250
           GA   A A+A   D RAR+  +++ +   +       +  + +  C + G W  A     
Sbjct: 139 GACYDALADALGFDGRARDAERLLREIGEEDREVLGRLLNVLVRRCCRGGMWNEALEELG 198

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            +   G  P +V  +AL+     AG+V+  F + +E    G  +   +      A     
Sbjct: 199 RLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEG 258

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            W  AL++ E  +  KL   + T   +I+ L +     + M  L  M+     PN +TY 
Sbjct: 259 RWADALDMIER-EDFKLDTVLCTH--MISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYR 315

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR-YEKARTLNEHVLSF 428
            LL    +K  +     +++    +G  PN  +F  ++   C+ + Y  A  L   + + 
Sbjct: 316 TLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTT- 374

Query: 429 NSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVS 488
             G P           +VY   I  G+I   E        L  P   D+ E++   +  +
Sbjct: 375 -CGCPP--------GYVVYN--IFIGSICGQEK-------LPSPDLLDLAEKIYGEMLAA 416

Query: 489 ADALKRSNLCSL---IDGFGEYDPRAFSLLEEAASFGIVPCVSF--KEIPVVVDARKLEI 543
              L + N+ +    + G G++D +AF L++E    G VP  S   K I  +  A K+E 
Sbjct: 417 NCVLNKVNVANFARCLCGVGKFD-KAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVE- 474

Query: 544 HTAKVYLL 551
              K +LL
Sbjct: 475 ---KAFLL 479



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 93/245 (37%), Gaps = 61/245 (24%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +PT+ T+  L+     +K    A  +   + +AG + +   Y  L+    K+G +   FE
Sbjct: 524 SPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFE 583

Query: 149 ------------------------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
                                    + P+ V + AL+    ++  VD A ++L  M +  
Sbjct: 584 VYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSS- 642

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVY---------KMIHKYNI------------- 222
              +P+HI   AL+     AG++D A+EV+           +H Y               
Sbjct: 643 -GCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDL 701

Query: 223 -----------KGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
                        TP V  YT  I+   + G+ E A  +   M +KG  P+ V  +ALID
Sbjct: 702 AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALID 761

Query: 270 FAGHA 274
             G +
Sbjct: 762 GLGQS 766


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 166/387 (42%), Gaps = 15/387 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLS 93
           R+G +   I  L+ M +  +      Y++     CK   A    + F +++     PT+ 
Sbjct: 239 RRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVV 298

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDA--MFENV 150
           T+  L+S   +  +   AF+V   +   G+  +   +T +I+  C  +   +A  +F  +
Sbjct: 299 TYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEM 358

Query: 151 K-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           K     P  V +N +I    +SG +  AF +L EM  +     PD  T   L+    + G
Sbjct: 359 KERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGK--GFVPDTYTYRPLISGLCSVG 416

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +V  A+E    +HK + K     Y+  ++   + G ++ A S    M ++GV  D V  +
Sbjct: 417 RVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYA 476

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LID         A F +L+E  N G+    + Y++++   S A N ++A  L++ M   
Sbjct: 477 ILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDE 536

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
              P V T  ALI  LC    + K   +  +     + PN ITY   L    R  ++E  
Sbjct: 537 GCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKA 596

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMC 411
           +  L  A   G +   V +  +I G C
Sbjct: 597 VQ-LHHAMLKGFLATTVSYNILIRGFC 622



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 148/354 (41%), Gaps = 20/354 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    R G ISE   LL++M  KG +     Y      +C S   + EA  F   
Sbjct: 369 TYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLC-SVGRVSEAKEFVDD 427

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQ----VLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +        NM  S        EG F+      R++ E G+  D   Y  LI   A+   
Sbjct: 428 LHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHD 487

Query: 143 VDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
             A+F          ++PD V++  +I    ++G +  AF +   M  E     P+ +T 
Sbjct: 488 TRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDE--GCLPNVVTY 545

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            AL+     AG +D+A  + K     ++      Y   ++  ++ G+ E A  ++  M K
Sbjct: 546 TALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLK 605

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G +   V  + LI      GK+E A ++L    +  I    I+YS+++       N Q+
Sbjct: 606 -GFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQE 664

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           A++L+  M    LKP     + L+   C   +L K  E+  +M   G+  N +T
Sbjct: 665 AIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGMRSNHVT 718



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 124/286 (43%), Gaps = 7/286 (2%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P +  ++ ++      KD   A +++  ++    K    +Y  LI    KS ++    E 
Sbjct: 129 PDIYIYSAVVRSLCELKDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEI 188

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
            N    + +   ++T  G+    +  F  + E       +  +HIT   L+ +    G++
Sbjct: 189 KNCLMQKGLEANVVTYYGKFNEAELLFKEMGEKG-----LCANHITYSILIDSFCRRGEM 243

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A      + K +I+ T   Y   IN   + G+   A   +D+M  KG+ P  V  ++L
Sbjct: 244 DNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSL 303

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I    + G+   AF++  E   +GIS    ++++++     A    +A+ L+  MK  K+
Sbjct: 304 ISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKI 363

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            P+  T N +I   C    + +   +L +M   G  P+T TY  L+
Sbjct: 364 MPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLI 409



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 122/269 (45%), Gaps = 12/269 (4%)

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           D +  NV+PD  +++A++ +  +    ++A +++  M  E +      +    L+     
Sbjct: 121 DIVSANVQPDIYIYSAVVRSLCELKDFNKAKEMIHWM--EFNQCKLSIVVYNVLIHGLCK 178

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           + ++  A E+   + +  ++          N  +  G +  A  ++ +M +KG+  + + 
Sbjct: 179 SRRIWEALEIKNCLMQKGLEA---------NVVTYYGKFNEAELLFKEMGEKGLCANHIT 229

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            S LID     G+++ A   L +     I   +  Y+SL+       N   A   ++ M 
Sbjct: 230 YSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMI 289

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              L PTV T  +LI+  C+  +  K  +V ++M + G+ PNT T++ ++    R + + 
Sbjct: 290 DKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMA 349

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             + L  + KE  ++P+ V +  +I G C
Sbjct: 350 EAIRLFGEMKERKIMPSEVTYNVMIEGHC 378



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/315 (20%), Positives = 127/315 (40%), Gaps = 20/315 (6%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVD---AMFENVKPDRVVF-----NALITA---CGQSG 168
           E GL A+   Y+ LI +  + G++D      + +    + F     N+LI      G + 
Sbjct: 220 EKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYCKLGNAS 279

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
           A    FD + +       + P  +T  +L+    N G+  +A +VY  +    I      
Sbjct: 280 AAKYYFDEMIDKG-----LTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYT 334

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           +T  I+   +      A  ++ +M ++ ++P EV  + +I+    +G +  AF +L E  
Sbjct: 335 FTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMV 394

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +G      +Y  L+    +     +A E  + +     K      +AL+   C   +  
Sbjct: 395 GKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFK 454

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             +     M   G+  + + Y+IL+    R+ D      LL +    G+ P+ V++  +I
Sbjct: 455 DAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMI 514

Query: 409 GMCSRRYEKARTLNE 423
                R+ KA  L E
Sbjct: 515 D----RHSKAGNLKE 525



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 93/425 (21%), Positives = 165/425 (38%), Gaps = 59/425 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +Y  LI     +G   +   +  +M  KG+      + A    +C++   + EA R F  
Sbjct: 299 TYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRAN-MMAEAIRLFGE 357

Query: 85  ----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
               K++P+    T+N+++     S +   AF +L  +   G   D   Y  LI+     
Sbjct: 358 MKERKIMPSEV--TYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSV 415

Query: 141 GKVDAMFENV--------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+V    E V        K + + ++AL+    + G    A      M      V  D +
Sbjct: 416 GRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVER--GVAMDLV 473

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
               L+   A          + K +H + ++    +YT  I+  S+ G+ + A  ++D M
Sbjct: 474 CYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIM 533

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             +G +P+ V  +ALI+    AG ++ A  + +E     ++   I+Y   +   +   N 
Sbjct: 534 VDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGNM 593

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALC----------------DGDQLP-------- 348
           +KA++L+  M    L  TVS  N LI   C                D D LP        
Sbjct: 594 EKAVQLHHAMLKGFLATTVS-YNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTI 652

Query: 349 -----------KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
                      + +++   M   GL P+T+ YS L+  C    ++E    L  +    G+
Sbjct: 653 IYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRDEMIRRGM 712

Query: 398 IPNLV 402
             N V
Sbjct: 713 RSNHV 717



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 70/165 (42%), Gaps = 9/165 (5%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M    ++P+   LSAL++      +      +  +  +  +   I  YS+++ +    K+
Sbjct: 87  MKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVVRSLCELKD 146

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           + KA E+   M+  + K ++   N LI  LC   ++ + +E+ + +   GL  N +TY  
Sbjct: 147 FNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYYG 206

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
                E         +L  +  E G+  N + +  +I    RR E
Sbjct: 207 KFNEAE---------LLFKEMGEKGLCANHITYSILIDSFCRRGE 242


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 184/448 (41%), Gaps = 57/448 (12%)

Query: 30  HSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LI   R+G +  E   + +DM+  G +  DKV +    +V    +  KEA    +
Sbjct: 105 YTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVP-DKVTYNALLDVYGKSRRTKEAMEVLR 163

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +     +P++ T+N L+S  A     + A ++   + E G+  D   YTTL++   ++G
Sbjct: 164 EMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAG 223

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K ++             KP+   FNALI   G  G       V  E+        PD +T
Sbjct: 224 KDESAMRVFAEMRAAGCKPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSC--CVPDIVT 281

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+      G       V+K + +       + Y   I+  S+ G ++ A  +Y  M 
Sbjct: 282 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRML 341

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + G+ PD    +A++      G  E + +I  E K+       ++Y SL+ A +N K   
Sbjct: 342 EAGITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIG 401

Query: 314 KALELYEHMKS------------------------------IKLK-----PTVSTMNALI 338
           + L L E + S                              ++LK     P +ST+NA++
Sbjct: 402 RMLALAEEICSGVIEPHAVLLKTLVLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAML 461

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
           +         KT E+L+ M   G  P+  TY+ L+    R ++ E    +L +    G+ 
Sbjct: 462 SIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIK 521

Query: 399 PNLVMFKCII-GMC--SRRYEKARTLNE 423
           P+ + +  +I   C   R  E +R  +E
Sbjct: 522 PDTISYNTVIFAYCRNGRMKEASRIFSE 549



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 161/376 (42%), Gaps = 38/376 (10%)

Query: 69  NVCKSQKAIK---------EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVL 115
           N+C     IK         E  + F+ + N    P + T+N L++V   +        V 
Sbjct: 243 NICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVF 302

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQS 167
           + ++ AG   +   Y TLI+  ++ G  D   +         + PD   +NA++ A  + 
Sbjct: 303 KEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARG 362

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
           G  +++  + AEM        P+ +T  +L+ A AN  ++ R   + + I      G  E
Sbjct: 363 GLWEQSEKIFAEMKD--GRCKPNELTYCSLLHAYANGKEIGRMLALAEEI----CSGVIE 416

Query: 228 VYTIAINC-------CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
            + + +         C    + E A   + ++ +KG  PD   L+A++   G        
Sbjct: 417 PHAVLLKTLVLVNSKCDLLVEAEVA---FLELKRKGFSPDLSTLNAMLSIYGRRQMFTKT 473

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
            EIL      G +  + +Y+SLM   S ++N++++ E+ + + +  +KP   + N +I A
Sbjct: 474 NEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFA 533

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
            C   ++ +   + S+M+  GL P+ ITY+  + +       E  + ++    + G  PN
Sbjct: 534 YCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDVVRYMIKHGCKPN 593

Query: 401 LVMFKCII-GMCSRRY 415
              +  ++ G C   +
Sbjct: 594 QNTYNSVVDGYCKHNH 609



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/430 (21%), Positives = 176/430 (40%), Gaps = 25/430 (5%)

Query: 133 LITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           +I+   K GKV        D   +    D   + +LITAC  +G    A  V  +M  E 
Sbjct: 4   IISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEE- 62

Query: 185 HPVDPDHITIGALMKACANAGQ-VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
               P  IT   ++      G   ++ + +++ +    +      Y   I CC +    E
Sbjct: 63  -GCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLHE 121

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A +V+ DM   G +PD+V  +AL+D  G + + + A E+L+E +  G S  I++Y+SL+
Sbjct: 122 EAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLI 181

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
            A +     ++A+EL   M    +   V T   L++      +    M V ++M++ G  
Sbjct: 182 SAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCK 241

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 423
           PN  T++ L+     +      + +  + K    +P++V +  ++ +  +    +     
Sbjct: 242 PNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGV 301

Query: 424 HVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLGCLQL 471
                 +G     + + +L            A+ +Y+  + AG  P +   + VL  L  
Sbjct: 302 FKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALAR 361

Query: 472 PYNADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAFSLLEEAASFGIVPCVSF 529
               +  E++   +            CSL+  +  G+   R  +L EE  S  I P    
Sbjct: 362 GGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAVL 421

Query: 530 KEIPVVVDAR 539
            +  V+V+++
Sbjct: 422 LKTLVLVNSK 431



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 9/215 (4%)

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
           +  ++      G+V  A  +   +HK         YT  I  C   G +  A  V+  M 
Sbjct: 1   VAVIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKME 60

Query: 254 KKGVIPDEVFLSALIDFAGHAG----KVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           ++G  P  +  + +++  G  G    K++  FE +   KN G+     +Y++L+  C   
Sbjct: 61  EEGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGM---KNAGVLPDEYTYNTLITCCRRG 117

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
              ++A  +++ MKS+   P   T NAL+       +  + MEVL +M+  G  P+ +TY
Sbjct: 118 SLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTY 177

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           + L+ A  R   ++  + L +Q  E G+  NL +F
Sbjct: 178 NSLISAYARDGLLKEAMELKNQMVEGGI--NLDVF 210



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 113/267 (42%), Gaps = 30/267 (11%)

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
           ++ +I   G  GKV  A  +L +    G  + + +Y+SL+ AC +   +++A+ +++ M+
Sbjct: 1   VAVIISMLGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKME 60

Query: 324 SIKLKPTVSTMNALITALCD-GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               KPT+ T N ++      G    K   +   MK+ G+ P+  TY+ L+  C R    
Sbjct: 61  EEGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSLH 120

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
           E    +    K  G +P+ V +  ++ +    Y K+R   E                   
Sbjct: 121 EEAAAVFKDMKSMGFVPDKVTYNALLDV----YGKSRRTKE------------------- 157

Query: 443 ALMVYREAIVAGTIPTVEVVSKVLGCLQ----LPYNADIRERLVENLGVSADALKRSNLC 498
           A+ V RE  V G  P++   + ++        L    +++ ++VE  G++ D    + L 
Sbjct: 158 AMEVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEG-GINLDVFTYTTLL 216

Query: 499 SLIDGFGEYDPRAFSLLEEAASFGIVP 525
           S     G+ D  A  +  E  + G  P
Sbjct: 217 SGFVRAGK-DESAMRVFAEMRAAGCKP 242



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 65/342 (19%), Positives = 148/342 (43%), Gaps = 27/342 (7%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKS-QKAIKEAFRFFKLVPNPTLS 93
           + G  SE   + ++M+R G +     Y+     ++ C S  +A+    R  +    P LS
Sbjct: 291 QNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLS 350

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS---GKVDAMFENV 150
           T+N +++  A     E + ++   +++   K +   Y +L+   A     G++ A+ E +
Sbjct: 351 TYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEI 410

Query: 151 -----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-------PDHITIGALM 198
                +P  V+   L+        V+   D+L E  AEV  ++       PD  T+ A++
Sbjct: 411 CSGVIEPHAVLLKTLVL-------VNSKCDLLVE--AEVAFLELKRKGFSPDLSTLNAML 461

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                     +  E+   +++     +   Y   +   S++ ++E +  V  ++  KG+ 
Sbjct: 462 SIYGRRQMFTKTNEILNFMNESGFTPSLATYNSLMYMHSRSENFERSEEVLKEILAKGIK 521

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD +  + +I      G+++ A  I  E +  G+   +I+Y++ + + +    ++ A+++
Sbjct: 522 PDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAIDV 581

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
             +M     KP  +T N+++   C  +     +  +S +  L
Sbjct: 582 VRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDAIMFISSLHEL 623


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 82/375 (21%), Positives = 166/375 (44%), Gaps = 45/375 (12%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK-------PDRVVFNALITA 163
           AF++L  ++E G+K D  L++TLI    + G++D   E  K       P+ + +N ++  
Sbjct: 18  AFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECSPNVITYNTVVNG 77

Query: 164 CGQSGAVDRAFDVLAEMNAEV---HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220
             ++  +D   ++  +M       H  +PD I+   ++ A   A +VD+A E +K +   
Sbjct: 78  LCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAV 137

Query: 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
                   Y+  I+   +    + A S+   +  + ++P  ++ +A+++     GK    
Sbjct: 138 GCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSEC 197

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
            E+L   K +G  + II +++++ A       +KA + +E +     KP V T N  +  
Sbjct: 198 LELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHG 257

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-C-----ERKDDVEVGLMLLSQAKE 394
           LC   ++ +   +L +M    + P+ ITYS ++   C     ++ DDV   +M+      
Sbjct: 258 LCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHE---- 313

Query: 395 DGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAG 454
              IP+ V F  ++               H  S        E+K +  A  V+ + + AG
Sbjct: 314 --CIPHPVTFMTLL---------------HGFS--------EHKKSREAFRVHEDMVNAG 348

Query: 455 TIPTVEVVSKVLGCL 469
            IP ++  + ++ C+
Sbjct: 349 FIPGLQTYNVLMDCV 363



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/417 (21%), Positives = 179/417 (42%), Gaps = 50/417 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N   + G++ +  +LL++M+ +G+  MD + H+        +  I EA   FK +    +
Sbjct: 7   NGFCKAGQVDQAFELLDEMKERGV-KMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECS 65

Query: 90  PTLSTFNMLMS-VCASSKDSEGA--FQVLRLVQEA--GLKADCKLYTTLITTCAKSGKVD 144
           P + T+N +++ +C +++  EG   F  +    EA  G + D   Y+T+I    K+ +VD
Sbjct: 66  PNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVD 125

Query: 145 AMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAE------------- 183
             +E  K        P+ V +++LI    +   VD A+ +L ++  E             
Sbjct: 126 KAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVV 185

Query: 184 ----------------VHPVDP----DHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
                           +H  +     + I   A++ A     + ++A + ++ + K   K
Sbjct: 186 NGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKK 245

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                Y +A++   + G  + A  +  +M +  V PD +  S++ID    AG+++ A ++
Sbjct: 246 PNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDV 305

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
                        +++ +L+   S  K  ++A  ++E M +    P + T N L+  +C 
Sbjct: 306 FTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCG 365

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
            D +   +E+   MK     P+  TY+ L+    R   V+     L   + D V+PN
Sbjct: 366 ADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPN 422



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 154/377 (40%), Gaps = 67/377 (17%)

Query: 33  NRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           N   RQG+ SEC++LL  M+ KG    ++D + + HA + N  + +KA +   R  K   
Sbjct: 186 NGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKND-EQEKACQFFERLLKSGK 244

Query: 89  NPTLSTFNM-LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-- 145
            P + T+N+ +  +C + K  E A+++L  + E+ +  D   Y+++I    K+G++D   
Sbjct: 245 KPNVVTYNVAVHGLCKAGKVDE-AYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKAD 303

Query: 146 ------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHP------------ 186
                 M     P  V F  L+    +      AF V  +M NA   P            
Sbjct: 304 DVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 363

Query: 187 --------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
                                 PD  T   L++    A +VD A+E   ++   N+    
Sbjct: 364 CGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNG 423

Query: 227 EVYTIAINCCSQTGDWEFACSVYDD-------------------MTKKGVIPDEVFLSAL 267
            +    +    + G+ + ACSV D+                   M  KGV PDE    A+
Sbjct: 424 AICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAV 483

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           +       +V++A    ++  ++G + G+++Y+ L+G   +A     A  ++E M +   
Sbjct: 484 LRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADDAFRIFEAMVAAGF 543

Query: 328 KPTVSTMNALITALCDG 344
            P   TM  L + L D 
Sbjct: 544 TPQAQTMRTLSSCLRDA 560



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 169/370 (45%), Gaps = 33/370 (8%)

Query: 33  NRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLV 87
           N L +  RI E ++L +DME++       + D + ++   + +CK+Q+ + +A+ +FK +
Sbjct: 76  NGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQR-VDKAYEYFKRM 134

Query: 88  PN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
                 P + T++ L+         + A+ +L  ++   +      Y  ++    + GK 
Sbjct: 135 RAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKP 194

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHI 192
               E            + + FNA++ A  ++   ++A   F+ L +   +     P+ +
Sbjct: 195 SECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKK-----PNVV 249

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYD 250
           T    +     AG+VD A  +  ++     K TP+V  Y+  I+   + G  + A  V+ 
Sbjct: 250 TYNVAVHGLCKAGKVDEAYRI--LLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFT 307

Query: 251 DMTKKGVIPDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
            M     IP  V F++ L  F+ H  K   AF + ++  N G   G+ +Y+ LM     A
Sbjct: 308 RMMVHECIPHPVTFMTLLHGFSEHK-KSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGA 366

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TIT 368
            + + ALE+Y  MK  K +P  +T   LI  LC   ++ +  E L  M++  + PN  I 
Sbjct: 367 DSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAIC 426

Query: 369 YSILLVACER 378
           ++++ V C++
Sbjct: 427 HALVEVLCKQ 436



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 133/297 (44%), Gaps = 24/297 (8%)

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           +YT  IN   + G  + A  + D+M ++GV  D +  S LI      G+++ A E  + +
Sbjct: 1   MYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFK-S 59

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK-----SIKLKPTVSTMNALITALC 342
             +  S  +I+Y++++     A    + LEL++ M+     S   +P V + + +I ALC
Sbjct: 60  MGEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALC 119

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
              ++ K  E    M+++G  PN +TYS L+    + D V+    LL Q K + ++P  +
Sbjct: 120 KAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAM 179

Query: 403 MFKCIIGMCSRR-----------YEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREA 450
            +  ++    R+           + K +    +++ FN+    + +N     A   +   
Sbjct: 180 YYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERL 239

Query: 451 IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLIDGF 504
           + +G  P V   +  +  L      D   R++  +    V+ D +  S   S+IDGF
Sbjct: 240 LKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYS---SIIDGF 293


>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 845

 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 139/314 (44%), Gaps = 46/314 (14%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKS---GKVDAMFENV-----KPDRVVFNALITACGQSG 168
           L ++ G K D   YTT++    ++   G ++ + + +     KP+ V +N LI + G++ 
Sbjct: 339 LKRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRAN 398

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            ++ A +V  +M       +PD +T   L+   A AG +D A ++Y+ +    +      
Sbjct: 399 YLNEAMNVFKQMQEA--GCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFT 456

Query: 229 YTIAINCCSQTG-----------------------------------DWEFACSVYDDMT 253
           Y++ INC  + G                                   ++E A  +Y DM 
Sbjct: 457 YSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQ 516

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
             G  PD+V  S +++  GH G +E A  +  E + +        Y  L+     A N +
Sbjct: 517 NAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVE 576

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA + Y+ M    L+P V T N+L++      ++ +   +L  M +LGL P+  TY++LL
Sbjct: 577 KAWQWYQEMLHAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLL 636

Query: 374 VAC-ERKDDVEVGL 386
             C + + + ++G 
Sbjct: 637 SCCTDARSNFDMGF 650



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 133/322 (41%), Gaps = 17/322 (5%)

Query: 3   DGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKV 62
           D   N L F Y   +   + HD          L R  +      LL++M + G    + V
Sbjct: 327 DNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGC-KPNTV 385

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            + R  +       + EA   FK +      P   T+  L+ + A +   + A  + + +
Sbjct: 386 TYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRM 445

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAV 170
           Q AGL  D   Y+ +I    K+G + A          +   P+ V FN +I    ++   
Sbjct: 446 QAAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNY 505

Query: 171 DRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           + A  +  +M NA   P   D +T   +M+   + G ++ A  V+  + + N      VY
Sbjct: 506 ETALKLYRDMQNAGFQP---DKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVY 562

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
            + ++   + G+ E A   Y +M   G+ P+    ++L+       ++  A+ +LQ    
Sbjct: 563 GLLVDLWGKAGNVEKAWQWYQEMLHAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLA 622

Query: 290 QGISVGIISYSSLMGACSNAKN 311
            G+   + +Y+ L+  C++A++
Sbjct: 623 LGLHPSLQTYTLLLSCCTDARS 644



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 84/201 (41%), Gaps = 3/201 (1%)

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           Y +  +   K     YT  +    +   +     + D+M K G  P+ V  + LI   G 
Sbjct: 337 YWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGR 396

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           A  +  A  + ++ +  G     ++Y +L+   + A     A+++Y+ M++  L P   T
Sbjct: 397 ANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFT 456

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            + +I  L     LP    +  +M   G  PN +T++I++    +  + E  L L    +
Sbjct: 457 YSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQ 516

Query: 394 EDGVIPNLVMFKC---IIGMC 411
             G  P+ V +     ++G C
Sbjct: 517 NAGFQPDKVTYSIVMEVLGHC 537



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 26/217 (11%)

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + G   D    + ++   G A +  A   +L E    G     ++Y+ L+ +   A    
Sbjct: 342 QPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLN 401

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A+ +++ M+    +P   T   LI        L   M++   M++ GL P+T TYS+++
Sbjct: 402 EAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVII 461

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP 433
               +   +     L  +    G  PNLV F  +I +    + KAR              
Sbjct: 462 NCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIAL----HAKARNYET---------- 507

Query: 434 QIENKWTSLALMVYREAIVAGTIP---TVEVVSKVLG 467
                    AL +YR+   AG  P   T  +V +VLG
Sbjct: 508 ---------ALKLYRDMQNAGFQPDKVTYSIVMEVLG 535


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 159/345 (46%), Gaps = 13/345 (3%)

Query: 94  TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---- 148
           TFN L+  + A +K ++      +LV+E   + +  +Y T++   +K G  +        
Sbjct: 134 TFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRI 193

Query: 149 ----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
               N KPD   ++ +I A  +   +D A ++L EM  +  P  P+  T  +L+      
Sbjct: 194 MEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIP--PNIFTYNSLIDGLCKL 251

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           GQ ++ + +   +   NI      ++I I+   + G  E A  V   M +KGV PD +  
Sbjct: 252 GQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITY 311

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           SA++D     G+V+ A  +    +++GI   I SYS L+      KN  KA++L+  +  
Sbjct: 312 SAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQ 371

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             LKP   T + ++  L +  ++    ++  +M  +G  P+   +S LL    +   VE 
Sbjct: 372 KGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEE 431

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLS 427
            ++L S+ + +    N+  +  +I G+C   R  +A  + E + S
Sbjct: 432 AMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPS 476



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/386 (20%), Positives = 178/386 (46%), Gaps = 14/386 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L  + ++++ + L + + R+ + + ++V +    N    +   ++     +++      P
Sbjct: 142 LFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKP 201

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMF 147
            + T+++++       + + A  +L  +++  +  +   Y +LI    K G   KV  + 
Sbjct: 202 DVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLL 261

Query: 148 E-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                 N+ P+   F+ LI    + G V+ A +V+  M  +   V+PD IT  A+M    
Sbjct: 262 SEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEK--GVEPDIITYSAIMDGYC 319

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             GQVDRAR V+ ++    IK     Y+I IN   +  +   A  ++ ++++KG+ PD V
Sbjct: 320 LRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTV 379

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             S ++      G++  A +I  E    G +  I  +S+L+         ++A+ L+  +
Sbjct: 380 TYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKL 439

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           +  +    +S    +I  LC  D++ +   +   + S+GL P+  TY++++    R+   
Sbjct: 440 ERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLF 499

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII 408
           +    +L + +++G   N + +  I+
Sbjct: 500 DEVKGILRKMEDNGCPANNITYNVIM 525



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 68/388 (17%), Positives = 152/388 (39%), Gaps = 55/388 (14%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           +  N   DV       + L +   +   I+LL +M++K +      Y++    +CK  + 
Sbjct: 195 EQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQW 254

Query: 77  IKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            K      ++V    NP + TF++L+         E A +V+R + E G++ D   Y+ +
Sbjct: 255 EKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAI 314

Query: 134 ITTCAKSGKVDA---MF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +      G+VD    +F     + +KP+   ++ LI    +   + +A  +  E++ +  
Sbjct: 315 MDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQK-- 372

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV----------------- 228
            + PD +T   ++      G++  A++++  + +  +  TP++                 
Sbjct: 373 GLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLR--VGPTPDICLHSTLLFGYFKYGLVE 430

Query: 229 --------------------YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
                               YT+ IN   +      A ++++ +   G+IPD    + +I
Sbjct: 431 EAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMI 490

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                 G  +    IL++ ++ G     I+Y+ +M     +    + +   + M      
Sbjct: 491 TGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFS 550

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSD 356
              +T   LI  L +    P  ++++ D
Sbjct: 551 FDATTTGVLINVLKEN---PSIVDMIPD 575


>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera]
 gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
          Length = 878

 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/382 (22%), Positives = 168/382 (43%), Gaps = 36/382 (9%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           ++G + E   L+E M+R G L   + Y+     + ++ K ++      ++V     P + 
Sbjct: 307 KEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIY 366

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DA 145
           +FN +M     +     A  ++ L+  +G+  D   Y+TL+  C  +GKV        + 
Sbjct: 367 SFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEM 426

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           M     P+    N L+ +  + G +  A  +L +MN   +  D D++T   ++     +G
Sbjct: 427 MRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSY--DLDNVTCNIVIDGLCKSG 484

Query: 206 QVDRAREVYK--MIHKYNIKGT-------------------PEV--YTIAINCCSQTGDW 242
           ++D A E+ +   IH     G                    P++  Y+I IN   + G  
Sbjct: 485 KLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRL 544

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           + A   + +M  K + PD +     I      GK+ +AF +L++ + +G +  + +Y+SL
Sbjct: 545 DEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSL 604

Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           +    +     +   L + MK   + P + T N +I+ LC+G ++     +L +M   G+
Sbjct: 605 ILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGI 664

Query: 363 CPNTITYSILLVACERKDDVEV 384
            PN  ++ +L+ A  +  D  V
Sbjct: 665 SPNISSFRLLIKAFCKASDFGV 686



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 92/423 (21%), Positives = 177/423 (41%), Gaps = 52/423 (12%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL- 86
           YN LI    R+GR  E   L+E M   GL      +++R   +C + K I EA R F+  
Sbjct: 224 YNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGK-ILEASRIFRDM 282

Query: 87  -------VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                  +P P ++TFN+++         E A  ++  ++  G   + + Y   +    +
Sbjct: 283 QIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVR 342

Query: 140 SGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           +GK+        + + + ++P+   FN ++    ++G +  A  ++  M +    + PD 
Sbjct: 343 NGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISS--GIGPDT 400

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSV 248
           +T   L+  C + G+V +A  +   +H+   +G +P  YT  I ++   + G    A  +
Sbjct: 401 VTYSTLLHGCCSTGKVLKANNI---LHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKL 457

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-------------- 294
              M ++    D V  + +ID    +GK++ A EI++     G +               
Sbjct: 458 LQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDS 517

Query: 295 ---------GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
                     +I+YS ++     A    +A + +  M    L P     +  I + C   
Sbjct: 518 SSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDTFIHSFCKHG 577

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           ++     VL DM+  G   +  TY+ L++    K+ +     LL   KE G+ PN+  + 
Sbjct: 578 KISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYN 637

Query: 406 CII 408
            +I
Sbjct: 638 NMI 640



 Score = 75.9 bits (185), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 149/331 (45%), Gaps = 25/331 (7%)

Query: 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI-GALMKACANAGQVDRAREVYKMI 217
           ALI    +SG  D AF       ++V P +P  + +   ++++     +VD    +YK +
Sbjct: 84  ALIRILAKSGLSDLAFSQFQSFRSQV-PANPPPVYLYNMVLESSLREDKVDSFSWLYKDM 142

Query: 218 HKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
               +  +PE YT+   I     +G +E A  V+D M  KG  P+E     L+     AG
Sbjct: 143 VVAGV--SPETYTLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAG 200

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTM 334
               A E+L    + G+    + Y++L+ + C   +N ++A  L E M+   L P V T 
Sbjct: 201 LSMRALELLDGMGSFGVQPNKVIYNTLISSFCREGRN-EEAERLVERMREDGLFPDVVTF 259

Query: 335 NALITALCDGDQLPKTMEVLSDMK---SLGLC-PNTITYSILLVACERKDDVEVGLMLLS 390
           N+ I+ALC   ++ +   +  DM+    LGL  PN  T++++L    ++  +E    L+ 
Sbjct: 260 NSRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVE 319

Query: 391 QAKEDGVIPNLVMFKC-IIGMC--SRRYEKARTLNE--------HVLSFNSGRPQI-ENK 438
             K +G +  L  +   ++G+    +  E    L E        ++ SFN+    + +N 
Sbjct: 320 SMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNG 379

Query: 439 WTSLALMVYREAIVAGTIPTVEVVSKVL-GC 468
             S A M+    I +G  P     S +L GC
Sbjct: 380 LISDARMIMGLMISSGIGPDTVTYSTLLHGC 410



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 127/294 (43%), Gaps = 10/294 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------- 142
           P   +F +L+     +  S  A ++L  +   G++ +  +Y TLI++  + G+       
Sbjct: 184 PNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERL 243

Query: 143 VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEM--NAEVHPVDPDHITIGALMK 199
           V+ M E+ + PD V FN+ I+A   +G +  A  +  +M  + E+    P+  T   +++
Sbjct: 244 VERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLE 303

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G ++ A+ + + + +       E Y I +    + G    A     +M  KG+ P
Sbjct: 304 GFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEP 363

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    + ++D     G +  A  I+    + GI    ++YS+L+  C +     KA  + 
Sbjct: 364 NIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNIL 423

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             M      P   T N L+ +L    ++ +  ++L  M       + +T +I++
Sbjct: 424 HEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYDLDNVTCNIVI 477



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 4/175 (2%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           PD + ++ +I    ++G +D A     EM  +   + PD I     + +    G++  A 
Sbjct: 526 PDLITYSIIINGLCKAGRLDEARKKFIEMVGK--SLHPDSIIYDTFIHSFCKHGKISSAF 583

Query: 212 EVYKMIHKYNIKGTPEVY-TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            V K + K     + + Y ++ +   S+   +E    + DDM +KG+ P+    + +I  
Sbjct: 584 RVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIY-GLLDDMKEKGITPNICTYNNMISC 642

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
               G+++ A  +L E   +GIS  I S+  L+ A   A ++    E++E   SI
Sbjct: 643 LCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAFCKASDFGVVKEVFEIALSI 697


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/249 (29%), Positives = 122/249 (48%), Gaps = 8/249 (3%)

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
           G+ G V+  +  +      V+ V  D + I  L K     G+  +A +V + +  +    
Sbjct: 208 GRIGVVESVYKEMIRRRIGVNVVTFD-VVINGLCKV----GKFQKAGDVVEDMKAWGFSP 262

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
           +   Y   I+   + G    A ++  +M  K + P+E+  + LID       V AA ++ 
Sbjct: 263 SVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVF 322

Query: 285 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           +E + QG+   +++Y+SL+ G CSN K   +AL L + M  + LKP V T NALI   C 
Sbjct: 323 EEMQRQGLQPNVVTYNSLINGLCSNGK-LDEALGLQDKMSGMGLKPNVVTYNALINGFCK 381

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
              L +  E+L D+   GL PN IT++ L+ A  +   ++   +L S   + GV PN+  
Sbjct: 382 KKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVST 441

Query: 404 FKC-IIGMC 411
           + C I+G C
Sbjct: 442 YNCLIVGFC 450



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 163/341 (47%), Gaps = 13/341 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFEN- 149
           TF+++++        + A  V+  ++  G       Y T+I    K+GK+   DA+ +  
Sbjct: 231 TFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM 290

Query: 150 ----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               + P+ + FN LI    +   V  A  V  EM  +   + P+ +T  +L+    + G
Sbjct: 291 VAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEM--QRQGLQPNVVTYNSLINGLCSNG 348

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++D A  +   +    +K     Y   IN   +    + A  + DD+ K+G+ P+ +  +
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LID  G AG+++ AF +     + G+   + +Y+ L+       N ++A +L + M+  
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN 468

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
            LK  + T N L+ ALC   +  K + +L +M  +GL P+ +TY+ L+    R+ +    
Sbjct: 469 GLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAA 528

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA-RTLNE 423
           L + +  ++ G   N+V +  +I G C++ + E+A R LNE
Sbjct: 529 LNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNE 569



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 152/351 (43%), Gaps = 13/351 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N L + G+  +  D++EDM+  G       Y+      CK+ K  K      ++V    +
Sbjct: 237 NGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIH 296

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   TFN+L+      ++   A +V   +Q  GL+ +   Y +LI     +GK+D     
Sbjct: 297 PNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGL 356

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   +KP+ V +NALI    +   +  A ++L ++      + P+ IT   L+ A 
Sbjct: 357 QDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGK--RGLAPNVITFNTLIDAY 414

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AG++D A  +  M+    +      Y   I    + G+ + A  +  +M   G+  D 
Sbjct: 415 GKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADL 474

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L+D     G+   A  +L E    G++   ++Y++L+       N   AL +   
Sbjct: 475 VTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTL 534

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           M+    +  + T N LI   C+  +L +   +L++M   GL PN  TY IL
Sbjct: 535 MEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 585



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 129/281 (45%), Gaps = 2/281 (0%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P  + +N +I    ++G + +A  +L EM A+   + P+ IT   L+        V  A+
Sbjct: 262 PSVITYNTIIDGYCKAGKMFKADALLKEMVAK--RIHPNEITFNILIDGFCRDENVTAAK 319

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           +V++ + +  ++     Y   IN     G  + A  + D M+  G+ P+ V  +ALI+  
Sbjct: 320 KVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGF 379

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
                ++ A E+L +   +G++  +I++++L+ A   A     A  L   M    + P V
Sbjct: 380 CKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNV 439

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
           ST N LI   C    + +  ++  +M+  GL  + +TY+IL+ A  +K +    + LL +
Sbjct: 440 STYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDE 499

Query: 392 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
             E G+ P+ + +  +I    R       LN   L    GR
Sbjct: 500 MFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGR 540



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 120/256 (46%), Gaps = 2/256 (0%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           + ++ + L+ A  ++G +D A +      A  +      ++   ++ +    G++     
Sbjct: 158 NSIIVDMLVWAYVKNGEMDLALEGFDR--AGDYGFRLSALSCNPMLVSLVKEGRIGVVES 215

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           VYK + +  I      + + IN   + G ++ A  V +DM   G  P  +  + +ID   
Sbjct: 216 VYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYC 275

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            AGK+  A  +L+E   + I    I+++ L+      +N   A +++E M+   L+P V 
Sbjct: 276 KAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVV 335

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N+LI  LC   +L + + +   M  +GL PN +TY+ L+    +K  ++    +L   
Sbjct: 336 TYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDI 395

Query: 393 KEDGVIPNLVMFKCII 408
            + G+ PN++ F  +I
Sbjct: 396 GKRGLAPNVITFNTLI 411


>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 165/352 (46%), Gaps = 13/352 (3%)

Query: 70  VCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
           V KS+K IKE   F      P   T+N +++     +D  G  ++L+++++ G+  +   
Sbjct: 221 VEKSKKLIKE---FSGKGIKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNKVT 277

Query: 130 YTTLITTCAKSGK---VDAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           YT LI    K+GK   V+ +F+      ++ D  V+ +LI+   + G + RAF +  E+ 
Sbjct: 278 YTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDELT 337

Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
            +   + P   T GAL+      G++  A  +   +    +  T  V+   IN   + G 
Sbjct: 338 EK--GLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGM 395

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
            + A  +YD M KKG   D    + +        + + A + L      G+ +  +SY++
Sbjct: 396 IDEASMIYDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTN 455

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           L+       N ++A  L+  M S +++P   T N +I A C   ++ +  ++ ++MK+ G
Sbjct: 456 LIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVKEARKLWANMKANG 515

Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           + P++ TY+ L+      D+V+  + L S+    G+  N V +  +I   S+
Sbjct: 516 MDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSK 567



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 125/297 (42%), Gaps = 19/297 (6%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +   +H Y  LI    R+G I     L +++  KGLL     Y A    VCK  +     
Sbjct: 306 IESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAE 365

Query: 81  FRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
               ++     N T   FN L++        + A  +  ++++ G +AD     T I +C
Sbjct: 366 ILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQADVFTCNT-IASC 424

Query: 138 ---------AKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
                    AK      M   V+   V +  LI    + G V+ A  +  EM+++   V 
Sbjct: 425 FNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSK--EVQ 482

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ IT   ++ A    G+V  AR+++  +    +      YT  I+      + + A  +
Sbjct: 483 PNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRL 542

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
           + +M  KG+  + V  + +I     AGK + AF +  E K +G ++    Y++L+G+
Sbjct: 543 FSEMGLKGLDQNSVTYTVMISGLSKAGKSDEAFGLYDEIKRKGYTIDNKVYTALIGS 599



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 109/222 (49%), Gaps = 12/222 (5%)

Query: 205 GQVDRAREVYKMIHKYNIKG-TPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           G+V++++   K+I +++ KG  PE YT    IN   +  D+     +   M K GV+ ++
Sbjct: 219 GEVEKSK---KLIKEFSGKGIKPEAYTYNTIINAYLKHRDFSGVEKILKVMKKDGVVYNK 275

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LI+ +   GK+    ++  E + +GI   I  Y+SL+       N ++A  L++ 
Sbjct: 276 VTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLISWNCRKGNIKRAFLLFDE 335

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +    L P+  T  ALI  +C   ++     ++++M+S G+    + ++ L+    RK  
Sbjct: 336 LTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGM 395

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKC-IIGMCS---RRYEKAR 419
           ++   M+    ++ G   ++  F C  I  C    +RY++A+
Sbjct: 396 IDEASMIYDVMEKKGFQADV--FTCNTIASCFNRLKRYDEAK 435



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 152/364 (41%), Gaps = 65/364 (17%)

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           +R FNV + +++ + A+   KL  NP+L  FN+  +V              RLV      
Sbjct: 11  SRLFNVKQPEES-RRAWWIGKLQSNPSL-LFNLNSNVT-------------RLVL----- 50

Query: 125 ADCKLYTTLITTCAKSGKVDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           +D  L T    +C    K    FE N+KPD     A++T   +  +  R  ++   +N+ 
Sbjct: 51  SDPSLATQ---SCIDFFKFLREFESNLKPD---LTAVVTLSHRLYSNRRFSEMRLLLNSV 104

Query: 184 VH------PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
           V+      PV+     +G+ M  C      D + E ++   K+        + +      
Sbjct: 105 VNDGFYERPVEG----LGSAMVDC------DISEEKFEFWEKF--------FDLVFRVYV 146

Query: 238 QTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
             G +E    V+D M KKG+  DE    VFL A    A    +++   E  +   + G+ 
Sbjct: 147 DNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVA----AKKRRRIDLCLEFFRRMVDSGVK 202

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
           + + S + ++         +K+ +L +      +KP   T N +I A           ++
Sbjct: 203 ITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHRDFSGVEKI 262

Query: 354 LSDMKSLGLCPNTITYSILL---VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
           L  MK  G+  N +TY++L+   V   + +DVE    L  + +E G+  ++ ++  +I  
Sbjct: 263 LKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVE---KLFDEMRERGIESDIHVYTSLISW 319

Query: 411 CSRR 414
             R+
Sbjct: 320 NCRK 323


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 95/421 (22%), Positives = 192/421 (45%), Gaps = 24/421 (5%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI    + G + E   L  +M+  G +     Y+      CK +K +  A
Sbjct: 261 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK-MPRA 319

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F +F  + N    P + T++ L+         +GA ++L  ++  GL  +   YT+LI  
Sbjct: 320 FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDA 379

Query: 137 CAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K+G +        D +   VK + V + AL+    ++G +  A +V   M  +   + 
Sbjct: 380 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKD--GIS 437

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY-TIAINCCSQTGDWEFACS 247
           P+     AL+     A +++ A ++ K + + NIK    +Y +I    CSQ    E    
Sbjct: 438 PNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQR-KLEETKL 496

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           + ++M  +G+  + V  + +ID    AGK   A    QE ++ G+   I++Y  L+    
Sbjct: 497 ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLC 556

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            A   + A++ +  M S+ L+P V+   +LI  LC  + +    ++  +M+  G+ P+  
Sbjct: 557 EAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDIT 616

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNEH 424
            ++ L+    +  +++  L+L+S+  E  +  +L ++  ++     C   ++  +  NE 
Sbjct: 617 AFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEM 676

Query: 425 V 425
           +
Sbjct: 677 I 677



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 154/331 (46%), Gaps = 11/331 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
           P++ T+N+++       D E + ++   ++E GL  D   Y +LI    K G   +V ++
Sbjct: 228 PSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASL 287

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F  +K     PD + +N LI    +   + RAF+  +EM    + + P+ +T   L+ A 
Sbjct: 288 FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKN--NGLKPNVVTYSTLIDAF 345

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G +  A ++   + +  +      YT  I+   + G+   A  + +DM + GV  + 
Sbjct: 346 CKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNI 405

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  +AL+D    AG++  A E+ +     GIS     Y++L+     A+  + A+++ + 
Sbjct: 406 VTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQ 465

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    +KP +    ++I   C   +L +T  +L +MKS G+  N +  + ++ A  +   
Sbjct: 466 MTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGK 525

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
               L    + ++ GV   +V +  +I G+C
Sbjct: 526 SSDALNFFQEMQDVGVEATIVTYCVLIDGLC 556



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 147/328 (44%), Gaps = 12/328 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P   + N L+   + S + +   +    +  AG+      Y  +I    K G ++    +
Sbjct: 193 PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRL 252

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F  ++     PD V +N+LI   G+ G+++    +  EM  +V  V PD IT   L+   
Sbjct: 253 FVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMK-DVGCV-PDIITYNGLINCY 310

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               ++ RA E +  +    +K     Y+  I+   + G  + A  +  DM + G++P+E
Sbjct: 311 CKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNE 370

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++LID    AG +  A+++L +    G+ + I++Y++L+     A    +A E++  
Sbjct: 371 FTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRS 430

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKD 380
           M    + P      AL+      +++   M++L  M    + P+ I Y SI+   C ++ 
Sbjct: 431 MLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRK 490

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             E  L +L + K  G+  N V+   II
Sbjct: 491 LEETKL-ILEEMKSRGISANPVISTTII 517



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 119/257 (46%), Gaps = 3/257 (1%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           VF+ L +   + G ++ A +  + M        P   +   L+   + +G     R+ + 
Sbjct: 162 VFDVLFSVFVELGLLEEANECFSRMRN--FRTLPKARSCNFLLHRLSKSGNGQLVRKFFN 219

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            +    I  +   Y + I+   + GD E +  ++  M + G+ PD V  ++LID  G  G
Sbjct: 220 DMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVG 279

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
            +E    +  E K+ G    II+Y+ L+      +   +A E +  MK+  LKP V T +
Sbjct: 280 SLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYS 339

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI A C    +   +++L DM+  GL PN  TY+ L+ A  +  ++     LL+   + 
Sbjct: 340 TLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQA 399

Query: 396 GVIPNLVMFKCII-GMC 411
           GV  N+V +  ++ G+C
Sbjct: 400 GVKLNIVTYTALLDGLC 416



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 144/346 (41%), Gaps = 17/346 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK--EAFR-F 83
           +Y  LI    + G ++E   LL DM + G+      Y A    +CK+ + I+  E FR  
Sbjct: 372 TYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSM 431

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K   +P    +  L+     ++  E A ++L+ + E  +K D  LY ++I       K+
Sbjct: 432 LKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKL 491

Query: 144 DA---MFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +    + E +K      + V+   +I A  ++G    A +   EM      V+   +T  
Sbjct: 492 EETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDV--GVEATIVTYC 549

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            L+     AG V+ A + +  +    ++    VYT  I+        E A  ++D+M  +
Sbjct: 550 VLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCR 609

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G+ PD    +ALID     G ++ A  ++       I   +  Y+SL+   S      +A
Sbjct: 610 GMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQA 669

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
            + +  M    + P       L+       QL + +E+ ++M+ + 
Sbjct: 670 RKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMA 715



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 118/278 (42%), Gaps = 20/278 (7%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-----IKEAFRF 83
           +H Y   I+  R+ + + +L+ M    +     +Y +  +  C  +K      I E  + 
Sbjct: 447 VHGY---IKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKS 503

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             +  NP +ST   ++     +  S  A    + +Q+ G++A    Y  LI    ++G V
Sbjct: 504 RGISANPVIST--TIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIV 561

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +   +         ++P+  V+ +LI     +  ++ A  +  EM  +   + PD     
Sbjct: 562 ELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEM--QCRGMTPDITAFT 619

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           AL+      G +  A  +   + +  I+    VYT  ++  SQ G+   A   +++M +K
Sbjct: 620 ALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEK 679

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           G++P+EV    L+      G+++ A E+  E +    S
Sbjct: 680 GILPEEVLCICLLREYYKRGQLDEAIELKNEMERMAYS 717


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 171/403 (42%), Gaps = 37/403 (9%)

Query: 17  KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           K+A ++ DV           + G        L+ M   GL     +Y+     +CK+   
Sbjct: 21  KYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKA-GM 79

Query: 77  IKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           + EA  + K +P    P + ++N+++     +++ E A   LR ++E G       Y+++
Sbjct: 80  LAEAESYLKRMPQHCAPNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSI 139

Query: 134 ITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           + +  K+G V                            +A DV AEM A+    +PD + 
Sbjct: 140 VQSFCKTGNVS---------------------------KAMDVFAEMPAK--GCEPDIVN 170

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+     A ++  ARE+++ ++    K     Y   I    +    + A  + + M 
Sbjct: 171 FNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMK 230

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM---GACSNAK 310
           ++ V P  V  + LID      +++ A+E+ ++           +YS L+   G C  A+
Sbjct: 231 QEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGLC-KAR 289

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
              +A E+++ M+   + PTV T N L+  L    +L   ME+   M      PN  TY 
Sbjct: 290 RPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYE 349

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           IL+ +  + D VE    LLS  ++ G +P+L +++ ++   +R
Sbjct: 350 ILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLAR 392



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 84/382 (21%), Positives = 153/382 (40%), Gaps = 17/382 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN +I    +   I + +  L +ME  G       Y +   + CK+   + +A   F  
Sbjct: 100 SYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGN-VSKAMDVFAE 158

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +P     P +  FN+L+S    ++    A ++ R +   G K D   Y T+I    K  K
Sbjct: 159 MPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKK 218

Query: 143 VD-AMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +D A+F       E+V P  V +  LI    +   + +A++V  +M     P      ++
Sbjct: 219 LDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSV 278

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+     A +   A+E+++ +    I  T   Y   +     T   + A  +   M  
Sbjct: 279 LILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLD 338

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           +   P+      LI       +VE AF++L   +++G    +  +  L+   + A     
Sbjct: 339 QVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDD 398

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ELY+ M  I  +  V + N L+  +     + +  + L  M   G+ P+  TY  L+V
Sbjct: 399 AFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVV 458

Query: 375 ACERKDDVEVGLMLLSQAKEDG 396
               +   +    L+ +   DG
Sbjct: 459 GLCWQGKADQARKLVEELVRDG 480


>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
          Length = 879

 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 168/388 (43%), Gaps = 13/388 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLS 93
           + G +    +L+ +ME  G+     VYH+        Q   K    F +L      P++ 
Sbjct: 359 QSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSII 418

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDAMFEN- 149
           ++  L+++         A  + + ++  G+K + K Y+ LI             A+FE  
Sbjct: 419 SYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEM 478

Query: 150 ----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               ++PDR ++N LI A  + G +DRA  +L +M  E   + P +     +++  A AG
Sbjct: 479 LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKER--MQPSNRAFRPIIEGYAVAG 536

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +  A +   ++ +     T   Y   I+   +    + A SV D M+  G+ P+E   +
Sbjct: 537 DMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYT 596

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            ++     +G +  AFE   + K  G+ + +  Y +L+ AC  +   Q AL +   M   
Sbjct: 597 IIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ 656

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           K+       N LI        + +  +++  MK  G+ PN  TY+  + AC +  D++  
Sbjct: 657 KIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 716

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             ++ +  + G+ PN+  +  +I   +R
Sbjct: 717 EKVIEEMVDVGLKPNVKTYTTLIKGWAR 744



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 162/355 (45%), Gaps = 15/355 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N  ++ G++++ + + ++ME  G+   +K Y +   N          AF  F+ +     
Sbjct: 425 NLYVKIGKVAKALSISKEMESCGIKHNNKTY-SMLINGFIHLHDFANAFAIFEEMLRSGL 483

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P  + +N+L+       + + A  +L  +Q+  ++   + +  +I   A +G + +  +
Sbjct: 484 QPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALD 543

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            +         P  + +NALI    +   V RA  VL +M+  +  + P+  T   +M+ 
Sbjct: 544 TLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMS--IAGITPNEHTYTIIMRG 601

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A +G + +A E +  I +  +K    +Y   +  C ++G  + A +V  +M+ + +  +
Sbjct: 602 YAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRN 661

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID     G V  A +++++ K  G+   I +Y+S + AC  A + Q+A ++ E
Sbjct: 662 TFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIE 721

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            M  + LKP V T   LI          + ++   +MK  GL P+  +Y  L+ +
Sbjct: 722 EMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTS 776



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 148/359 (41%), Gaps = 42/359 (11%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TTCAKSGKVDAMFENVK- 151
           N++ + C S  + E A +++R ++E G+ A   +Y +++   T      K   +FE +K 
Sbjct: 352 NIIHAHCQSG-NMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKE 410

Query: 152 ----PDRVVFNALITACGQSGAVDRAFDVLAEM----------------NAEVHPVD--- 188
               P  + +  L+    + G V +A  +  EM                N  +H  D   
Sbjct: 411 CGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFAN 470

Query: 189 --------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
                         PD      L++A    G +DRA  + + + K  ++ +   +   I 
Sbjct: 471 AFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIE 530

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
             +  GD + A    D M + G +P  +  +ALI       KV+ A  +L +    GI+ 
Sbjct: 531 GYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITP 590

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
              +Y+ +M   + + +  KA E +  +K   LK  V     L+ A C   ++   + V 
Sbjct: 591 NEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVT 650

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            +M    +  NT  Y+IL+    R+ DV     L+ Q KEDGV PN+  +   I  C +
Sbjct: 651 REMSFQKIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCK 709



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 138/321 (42%), Gaps = 15/321 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPN 89
           N  I     +    + E+M R GL     +Y+      CK     +AI    +  K    
Sbjct: 460 NGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQ 519

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P+   F  ++   A + D + A   L L++ +G       Y  LI    +  KV      
Sbjct: 520 PSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSV 579

Query: 144 -DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M    + P+   +  ++     SG + +AF+   ++      +  D      L++AC
Sbjct: 580 LDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKES--GLKLDVYIYETLLRAC 637

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPD 260
             +G++  A  V + +    I     +Y I I+  ++ GD WE A  +   M + GV P+
Sbjct: 638 CKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWE-AEDLMKQMKEDGVPPN 696

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               ++ I+    AG ++ A ++++E  + G+   + +Y++L+   +      +AL+ +E
Sbjct: 697 IHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFE 756

Query: 321 HMKSIKLKPTVSTMNALITAL 341
            MK   LKP  ++ + L+T+L
Sbjct: 757 EMKLAGLKPDEASYHCLVTSL 777



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 140/342 (40%), Gaps = 47/342 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAM 146
           P    F  L+   A ++D  GA   +  ++  GL+     Y+ LI+  AK   S   D +
Sbjct: 275 PNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNL 334

Query: 147 FENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F+  K      + ++++ +I A  QSG ++RA +++ EM  +                  
Sbjct: 335 FKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVREMEED------------------ 376

Query: 202 ANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                +D   +VY  M+H Y I           N C           V++ + + G  P 
Sbjct: 377 ----GIDAPIDVYHSMMHGYTIIQNE-------NKC---------LVVFERLKECGFKPS 416

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +    L++     GKV  A  I +E ++ GI     +YS L+    +  ++  A  ++E
Sbjct: 417 IISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFE 476

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    L+P  +  N LI A C    + + + +L  M+   + P+   +  ++       
Sbjct: 477 EMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAG 536

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
           D++  L  L   +  G +P ++ +  +I    R+++  R ++
Sbjct: 537 DMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVS 578



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 117/267 (43%), Gaps = 3/267 (1%)

Query: 143 VDAMFENV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           V + FE + KP R  F  +I    + G    A      M A    ++P+     +L+ A 
Sbjct: 230 VVSAFERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRA--RGIEPNAFVFTSLVHAY 287

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A A  +  A    + +    ++ T   Y+I I+  ++  D + A +++ +   K    + 
Sbjct: 288 AVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNG 347

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  S +I     +G +E A E+++E +  GI   I  Y S+M   +  +N  K L ++E 
Sbjct: 348 IIYSNIIHAHCQSGNMERAEELVREMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFER 407

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +K    KP++ +   L+       ++ K + +  +M+S G+  N  TYS+L+       D
Sbjct: 408 LKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHD 467

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
                 +  +    G+ P+  ++  +I
Sbjct: 468 FANAFAIFEEMLRSGLQPDRAIYNLLI 494


>gi|359495626|ref|XP_002269600.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic [Vitis vinifera]
          Length = 701

 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 134/288 (46%), Gaps = 8/288 (2%)

Query: 144 DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M E  VKPD + F+ +I+    S   ++A +   +M        PD +T  A++ A  
Sbjct: 200 DEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPE--FGCHPDDVTYSAMIDAYG 257

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AG VD A ++Y        +  P  ++  I     +G+++   +VY++M   GV P+ V
Sbjct: 258 RAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLV 317

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L+D  G A +   A  I +E  N G+     +Y++L+ A   A+  + AL +Y+ M
Sbjct: 318 IYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEM 377

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDD 381
           K   L+ +V   N L+    D     +   +  DMKS G C P++ T+S L+        
Sbjct: 378 KEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGK 437

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFN 429
           V     +L+   E G  PN+ +   +I  C   Y KA   +E V +F+
Sbjct: 438 VSEAEAMLNAMLEAGFEPNIFVLTSLI-QC---YGKANRTDEVVRTFD 481



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 71/288 (24%), Positives = 142/288 (49%), Gaps = 22/288 (7%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           + + C N   +DRA +++  + +  +K     ++  I+C   +     A   ++ M + G
Sbjct: 185 VFRKCRN---LDRAEKLFDEMLERGVKPDNITFSTIISCARVSSLPNKAVEWFEKMPEFG 241

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
             PD+V  SA+ID  G AG V+ A ++   A+ +   +  +++S+L+     + N+   L
Sbjct: 242 CHPDDVTYSAMIDAYGRAGNVDMALKLYDRARTEKWRIDPVTFSTLIRIYGMSGNFDGCL 301

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            +YE MK++ +KP +   N L+ A+    +  +   +  +M + GL P+  TY+ LL A 
Sbjct: 302 NVYEEMKALGVKPNLVIYNTLLDAMGRAKRPWQAKNIYKEMTNNGLQPSWGTYAALLRAY 361

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ 434
            R    E  L++  + KE G+  ++V++  ++ MC+     E+A  + E + S  +  P 
Sbjct: 362 GRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGYTEEAAAIFEDMKSSGNCMP- 420

Query: 435 IENKWTSLALM-VYR--------EAIV-----AGTIPTVEVVSKVLGC 468
             + WT  +L+ +Y         EA++     AG  P + V++ ++ C
Sbjct: 421 --DSWTFSSLITIYSCSGKVSEAEAMLNAMLEAGFEPNIFVLTSLIQC 466



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 24/215 (11%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +++ LIR     G    C+++ E+M+  G+     +Y+    +     K   +A   +K 
Sbjct: 283 TFSTLIRIYGMSGNFDGCLNVYEEMKALGVKPNLVIYNT-LLDAMGRAKRPWQAKNIYKE 341

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           + N    P+  T+  L+     ++ +E A  V + ++E GL+    LY TL+  CA  G 
Sbjct: 342 MTNNGLQPSWGTYAALLRAYGRARYAEDALIVYKEMKEKGLELSVVLYNTLLAMCADVGY 401

Query: 143 VD---AMFENVK------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHI 192
            +   A+FE++K      PD   F++LIT    SG V  A    A +NA +    +P+  
Sbjct: 402 TEEAAAIFEDMKSSGNCMPDSWTFSSLITIYSCSGKVSEA---EAMLNAMLEAGFEPNIF 458

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
            + +L++    A + D     +  + + +I  TP+
Sbjct: 459 VLTSLIQCYGKANRTDEVVRTFDRLLELDI--TPD 491


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 158/365 (43%), Gaps = 42/365 (11%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKVDA 145
           P + ++N+L++       S+ A ++L ++ + G   DC      Y+T+I    K G +D 
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDG--GDCPPDVVSYSTVINGFFKEGDLDK 106

Query: 146 MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEM------------NAEVHP------ 186
           M +  + P+ V +N++I A  ++  VD+A +VL  M            N+ VH       
Sbjct: 107 MLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQ 166

Query: 187 ---------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
                          V+PD +T  +LM      G+   AR+++  + K  +K     Y  
Sbjct: 167 PKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGT 226

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            +   +  G       + D M + G+ P+    S L+       KVE A  +  + + QG
Sbjct: 227 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQG 286

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           ++   ++Y +++     +   + A+  +E M    L+P     N+LI +LC  D+  K  
Sbjct: 287 LNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAE 346

Query: 352 EVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
           E+  +M   G+C +TI + SI+   C+    +E G  L       GV P+++     +G 
Sbjct: 347 ELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESG-KLFDLMVRIGVKPDIITLGRFLGS 405

Query: 411 CSRRY 415
             R Y
Sbjct: 406 ARRDY 410



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 132/289 (45%), Gaps = 17/289 (5%)

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           D +     PD   +N L+           A ++L  M  +     PD ++   ++     
Sbjct: 41  DELLRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFK 100

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYT----IAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            G +D      KM+ +   + +P V T    IA  C +QT D   A  V   M K GV+P
Sbjct: 101 EGDLD------KMLDQ---RISPNVVTYNSIIAALCKAQTVDK--AMEVLTTMVKSGVMP 149

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D +  ++++     +G+ + A   L++ ++ G+   +++Y+SLM          +A +++
Sbjct: 150 DCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIF 209

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M    LKP ++T   L+        L +   +L  M   G+ PN   +SIL+ A  ++
Sbjct: 210 DSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQ 269

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNEHVL 426
           + VE  +++ S+ ++ G+ PN V +  +I  +C S R E A    E ++
Sbjct: 270 EKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMI 318



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 94/425 (22%), Positives = 170/425 (40%), Gaps = 85/425 (20%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN +I    +   + + +++L  M + G++     Y++     C S +  KEA
Sbjct: 112 ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQP-KEA 170

Query: 81  FRFFKLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
             F K + +    P + T+N LM  +C + + +E A ++   + + GLK D   Y TL+ 
Sbjct: 171 IVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTE-ARKIFDSMTKRGLKPDITTYGTLLQ 229

Query: 136 TCAKSGKV-------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
             A  G +       D M  N + P+  VF+ L+ A  +   V+ A  V ++M  +   +
Sbjct: 230 GYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ--GL 287

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA-- 245
           +P+ +T G ++     +G+V+ A   ++ +    ++    VY   I+       WE A  
Sbjct: 288 NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEE 347

Query: 246 ------------------------CS---------VYDDMTKKGVIPDEVFLSALIDFAG 272
                                   C          ++D M + GV PD + L     F G
Sbjct: 348 LFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGR---FLG 404

Query: 273 HAGKVEAAFE----ILQEAKNQG---------ISVGIISYSS------------LMGACS 307
            A +  + F     I     N G          + G  + +S            L G C 
Sbjct: 405 SARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCK 464

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
           N K    AL +++++  + LK    T N +I AL    +  +  ++     S GL PN  
Sbjct: 465 N-KLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYW 523

Query: 368 TYSIL 372
           TY ++
Sbjct: 524 TYRLM 528


>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 876

 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 139/314 (44%), Gaps = 46/314 (14%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKS---GKVDAMFENV-----KPDRVVFNALITACGQSG 168
           L ++ G   D   YTT++    ++   G ++ + + +     +P+ V +N LI + G++ 
Sbjct: 370 LKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRAN 429

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            ++ A DV  EM  +    +PD +T   L+   A AG +D A E+Y+ +    +      
Sbjct: 430 YLNDAVDVFNEM--QRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFT 487

Query: 229 YTIAINCCSQTG-----------------------------------DWEFACSVYDDMT 253
           Y++ INC  + G                                   +++ A  +Y DM 
Sbjct: 488 YSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQ 547

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
             G  PD+V  S +++  GH G ++ A  +  E K +        Y  L+     A N +
Sbjct: 548 SAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVDLWGKAGNVE 607

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA + Y+ M +  L+P V T N+L++A     +L     +L  M  LGL P+  TY++LL
Sbjct: 608 KAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQTYTLLL 667

Query: 374 VAC-ERKDDVEVGL 386
             C E +   ++G+
Sbjct: 668 SCCTEARSPYDMGI 681



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 3/165 (1%)

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           D M K G  P+ V  + LI   G A  +  A ++  E +  G     ++Y +L+   + A
Sbjct: 404 DQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKA 463

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
                ALE+Y+ M++  L P   T + +I  L     L    ++  +M   G  PN +TY
Sbjct: 464 GFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTY 523

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC---IIGMC 411
           +I++    +  + +  L L    +  G  P+ V +     ++G C
Sbjct: 524 NIMIALQAKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHC 568



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 58/278 (20%), Positives = 123/278 (44%), Gaps = 34/278 (12%)

Query: 19  ANYAHDVSEQLHSYNRL-IRQGRISECIDLLEDMERKGLLDM---------------DKV 62
           ANY +D  +  +   R+     R++ C  L++   + G LD                D  
Sbjct: 428 ANYLNDAVDVFNEMQRVGCEPDRVTYCT-LIDIHAKAGFLDFALEMYQRMQAAGLSPDTF 486

Query: 63  YHARFFNVCKSQKAIKEAFRFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            ++   N       +  A + F ++V     P L T+N+++++ A +++ + A ++ R +
Sbjct: 487 TYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQAKARNYQSALKLYRDM 546

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAV 170
           Q AG + D   Y+ ++      G +D   A+F  +K     PD  V+  L+   G++G V
Sbjct: 547 QSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDEPVYGLLVDLWGKAGNV 606

Query: 171 DRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           ++A+     M N  + P  P   T  +L+ A     ++  A  + + + +  +  + + Y
Sbjct: 607 EKAWQWYQTMLNTGLRPNVP---TCNSLLSAFLRVHKLADAYNLLQSMLELGLNPSLQTY 663

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           T+ ++CC++     +   +Y ++      P  +FL +L
Sbjct: 664 TLLLSCCTEARS-PYDMGIYCELMAVTGHPAHMFLLSL 700



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 79/208 (37%), Gaps = 61/208 (29%)

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL---------------- 341
           +Y++++G    AK +    +L + M     +P V T N LI +                 
Sbjct: 382 TYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEM 441

Query: 342 ----CDGDQ---------------LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               C+ D+               L   +E+   M++ GL P+T TYS+++    +   +
Sbjct: 442 QRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCLGKAGHL 501

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
                L  +  E G +PNLV +  +I + +    KAR                       
Sbjct: 502 AAAHKLFCEMVEQGCVPNLVTYNIMIALQA----KARNYQS------------------- 538

Query: 443 ALMVYREAIVAGTIP---TVEVVSKVLG 467
           AL +YR+   AG  P   T  +V +VLG
Sbjct: 539 ALKLYRDMQSAGFQPDKVTYSIVMEVLG 566


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 109/494 (22%), Positives = 211/494 (42%), Gaps = 84/494 (17%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           ++N+L+    ++G + E   L + + ++G+      ++     +CK + ++  A R    
Sbjct: 297 TFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCK-EGSLDRAVRLLGC 355

Query: 87  VPN----PTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           V      P + T+N ++  +C  S+  E A + L  +   G + +   Y ++I    K G
Sbjct: 356 VSREGLRPDVVTYNTVICGLCRKSRVVE-AEECLHKMVNGGFEPNDFTYNSIIDGYCKKG 414

Query: 142 KV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            V        DA+F+  KPD   + +L+    Q G  D+A  V  +   +   + P  I 
Sbjct: 415 MVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGK--GLRPSIIV 472

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+K     G +  A ++   + +   K     Y + IN   + G    A  +  D  
Sbjct: 473 YNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAI 532

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNW 312
            KG IPD    + L+D      K+++A E++    +QG++  +I+Y++L+ G C  AK+ 
Sbjct: 533 TKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKS- 591

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN------- 365
           ++ +E+++ M      P + T N +I +LC+  ++ + +++L +MKS GL P+       
Sbjct: 592 EEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTL 651

Query: 366 -----------------------------TITYSILLVACERKDDVEVGLMLLSQAKEDG 396
                                        T TY+I++ A   + ++++ L L S+ K++G
Sbjct: 652 ITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNG 711

Query: 397 VIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGT 455
             P+   ++ +I G C     K   +N+                         E I  G 
Sbjct: 712 CDPDNYTYRVLIDGFC-----KTGNVNQ-------------------GYKFLLENIEKGF 747

Query: 456 IPTVEVVSKVLGCL 469
           IP++    +VL CL
Sbjct: 748 IPSLTTFGRVLNCL 761



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 142/344 (41%), Gaps = 26/344 (7%)

Query: 32  YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAF 81
           YN LI+    QG I   + L+ +M  KG       Y+     +CK      +   I +A 
Sbjct: 473 YNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAI 532

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
               +   P + T+N L+         + A +++  +   G+  D   Y TL+    K+ 
Sbjct: 533 TKGCI---PDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTA 589

Query: 142 KVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K + + E  K        P+ + +N +I +   S  V+ A D+L EM ++   + PD ++
Sbjct: 590 KSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSK--GLTPDVVS 647

Query: 194 IGALMKACANAGQVDRAREVYKMIHK-YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
            G L+      G +D A  +++ + K Y++  T   Y I I+  S+  + + A  ++ +M
Sbjct: 648 FGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEM 707

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            K G  PD      LID     G V   ++ L E   +G    + ++  ++         
Sbjct: 708 KKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKV 767

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           Q+A+ +   M    + P   T+N +  A   G       E L D
Sbjct: 768 QEAVGIIHLMVQKDIVP--DTVNTIFEADKKGHITYHAYEFLYD 809



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/272 (21%), Positives = 122/272 (44%), Gaps = 4/272 (1%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           + +++   G  G  +   ++L+EM + +     + + + A M+     G++  A + ++ 
Sbjct: 122 YKSMLQKLGFHGKFNEMENLLSEMRSNLDNTLLEGVYVEA-MRFYGRKGKIQEAVDTFER 180

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           +  +N   +   Y   +N   + G +  A  VY  M  K V  D    +  I      G+
Sbjct: 181 MDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGR 240

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
             AA  +L+     G     ++Y +++       +  +A EL++ M    L P V+T N 
Sbjct: 241 PYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNK 300

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           L+ ALC    + ++  +   +   G+CPN  T++I +    ++  ++  + LL     +G
Sbjct: 301 LVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREG 360

Query: 397 VIPNLVMFKCII-GMC--SRRYEKARTLNEHV 425
           + P++V +  +I G+C  SR  E    L++ V
Sbjct: 361 LRPDVVTYNTVICGLCRKSRVVEAEECLHKMV 392



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 126/317 (39%), Gaps = 20/317 (6%)

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
           G+ G +  A D    M  ++   DP   +  A+M      G  ++A +VY  +    ++ 
Sbjct: 166 GRKGKIQEAVDTFERM--DLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVES 223

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
               YTI I    +TG    A  +  +M   G   + V    ++      G  + A E+ 
Sbjct: 224 DVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELF 283

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
            E     +   + +++ L+ A        ++  L++ +    + P + T N  I  LC  
Sbjct: 284 DEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKE 343

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
             L + + +L  +   GL P+ +TY+ ++    RK  V      L +    G  PN   +
Sbjct: 344 GSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTY 403

Query: 405 KCII-GMCSRRY--EKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYRE 449
             II G C +    +  R L + V  F   +P  E  + SL            A+ V+++
Sbjct: 404 NSIIDGYCKKGMVVDANRILKDAV--FKGFKPD-EFTYCSLVNGFCQDGDPDQAMAVFKD 460

Query: 450 AIVAGTIPTVEVVSKVL 466
            +  G  P++ V + ++
Sbjct: 461 GLGKGLRPSIIVYNTLI 477



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 117/279 (41%), Gaps = 28/279 (10%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           + +YN L+    RQ ++   I+L+  M  +G+      Y+     +CK+ K+ +E    F
Sbjct: 540 IFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKS-EEVMEIF 598

Query: 85  KLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           K +      P + T+N ++    +SK    A  +L  ++  GL  D   + TLIT   K 
Sbjct: 599 KAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKV 658

Query: 141 GKVDAMF---------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           G +D  +          +V      +N +I+A  +   +  A  + +EM    +  DPD+
Sbjct: 659 GDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKK--NGCDPDN 716

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIA--INCCSQTGDWEFACSV 248
            T   L+      G V++    YK + +   KG  P + T    +NC       + A  +
Sbjct: 717 YTYRVLIDGFCKTGNVNQG---YKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGI 773

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
              M +K ++PD V      D  GH      A+E L + 
Sbjct: 774 IHLMVQKDIVPDTVNTIFEADKKGHI--TYHAYEFLYDG 810


>gi|39104565|dbj|BAC42187.2| unknown protein [Arabidopsis thaliana]
          Length = 852

 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 124/553 (22%), Positives = 223/553 (40%), Gaps = 114/553 (20%)

Query: 132 TLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           T+I  C   G          D + EN+KP+  V N+L+       + D  + +    N +
Sbjct: 272 TMIDVCGLCGDYVKSRYIYEDLLKENIKPNIYVINSLMNV----NSHDLGYTLKVYKNMQ 327

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV----YTIAINCCSQT 239
           +  V  D  +   L+K C  AG+VD A+++YK   +    G  ++    Y   I   +  
Sbjct: 328 ILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLDAFTYCTIIKVFADA 387

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
             W++A  V DDM   GV P+    S+LI    +AG VE A  + +E    G       +
Sbjct: 388 KMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEPNSQCF 447

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKL-------------------------------- 327
           + L+ AC  A  + +A  L++  K   +                                
Sbjct: 448 NILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPNILKNNGPGSLVNR 507

Query: 328 ---------------KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
                          KPT +T N L+ A   G    +  E++ +MKSLGL PN IT+S L
Sbjct: 508 NSNSPYIQASKRFCFKPTTATYNILLKAC--GTDYYRGKELMDEMKSLGLSPNQITWSTL 565

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS---------------RRYEK 417
           +  C    DVE  + +L      G  P++V +   I +C+               RRY+ 
Sbjct: 566 IDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSLFEEMRRYQ- 624

Query: 418 ARTLNEHVLSFNSGRPQIENKWTSL-----ALMVYREAIVAGTIPTVEVVSKVLGCLQLP 472
              +  + +++N+   +  +K+ SL      L +Y++   AG  P    + +++      
Sbjct: 625 ---IKPNWVTYNT-LLKARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELI------ 674

Query: 473 YNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEI 532
              +  E +++  G S D +         D  G+   R  SLL E  +  +    +    
Sbjct: 675 --EEWCEGVIQENGRSQDKIS--------DQEGDNAGRPVSLLIEKVATHMQERTAGN-- 722

Query: 533 PVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDI 592
            + +D + L    A++ +L +L+ ++     G  + + ++L+ +   +  +V G++ I +
Sbjct: 723 -LAIDLQGLTKIEARLVVLAVLRMIKEDYMRGDVVID-DVLIIIGTDEANTVSGKQEITV 780

Query: 593 AERTTQAIAALLR 605
            E    A+  LLR
Sbjct: 781 QE----ALVKLLR 789



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 167/377 (44%), Gaps = 75/377 (19%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLED-------MERKGLLDMDKVYHARFFNVCKSQKA 76
           DV+  + SYN L++   ++  +DL +D       ME  GLL +D                
Sbjct: 330 DVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLD---------------- 373

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              AF            T+  ++ V A +K  + A +V   ++  G+  +   +++LI+ 
Sbjct: 374 ---AF------------TYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISA 418

Query: 137 CAKSGKVDA---MFENV-----KPDRVVFNALITACGQSGAVDRAFDVL-----AEMNAE 183
           CA +G V+    +FE +     +P+   FN L+ AC ++   DRAF +      + +N  
Sbjct: 419 CANAGLVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNES 478

Query: 184 VHPVD---------PDHIT---IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
           ++  D         P+ +     G+L+   +N+  +  ++       ++  K T   Y I
Sbjct: 479 LYADDIVSKGRTSSPNILKNNGPGSLVNRNSNSPYIQASK-------RFCFKPTTATYNI 531

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            +  C    D+     + D+M   G+ P+++  S LID  G +G VE A  IL+   + G
Sbjct: 532 LLKACGT--DYYRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAG 589

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
               +++Y++ +  C+  K  + A  L+E M+  ++KP   T N L+ A      L +  
Sbjct: 590 TRPDVVAYTTAIKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVR 649

Query: 352 EVLS---DMKSLGLCPN 365
           + L+   DM++ G  PN
Sbjct: 650 QCLAIYQDMRNAGYKPN 666



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 144/343 (41%), Gaps = 17/343 (4%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+      ++  C   G   ++R +Y+ + K NIK  P +Y I       + D  +   V
Sbjct: 265 PNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIK--PNIYVINSLMNVNSHDLGYTLKV 322

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS----VGIISYSSLMG 304
           Y +M    V  D    + L+     AG+V+ A +I +EAK    S    +   +Y +++ 
Sbjct: 323 YKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLDAFTYCTIIK 382

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
             ++AK W+ AL++ + MKS+ + P   T ++LI+A  +   + +   +  +M + G  P
Sbjct: 383 VFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEP 442

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 424
           N+  ++ILL AC      +    L    K   V  +L     +         K RT + +
Sbjct: 443 NSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIV--------SKGRTSSPN 494

Query: 425 VLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN 484
           +L  N     +     S  +   +      T  T  ++ K  G         + E  +++
Sbjct: 495 ILKNNGPGSLVNRNSNSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDE--MKS 552

Query: 485 LGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 527
           LG+S + +  S L  +  G G+ +  A  +L    S G  P V
Sbjct: 553 LGLSPNQITWSTLIDMCGGSGDVEG-AVRILRTMHSAGTRPDV 594


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 90/444 (20%), Positives = 180/444 (40%), Gaps = 32/444 (7%)

Query: 12  PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
           P  + +   Y++DV   ++  + L  +G I+ C+D+ ++  +  L D      A  F   
Sbjct: 63  PSVSVEKGKYSYDVESLINKLSSLPPRGSIARCLDIFKN--KLSLNDF-----ALVFKEF 115

Query: 72  KSQKAIKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
             +   + + R FK +       P    + +++S+       +   +V   +   G+   
Sbjct: 116 AGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRS 175

Query: 127 CKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG-AVDRAFDVL 177
              YT LI    ++G+ +   E         + P  + +N +I AC + G   +    + 
Sbjct: 176 VFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLF 235

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
           AEM  E   + PD +T   L+ ACA  G  D A  V++ ++   I      Y+  +    
Sbjct: 236 AEMRHE--GIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFG 293

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           +    E  C +  +M   G +PD    + L++    +G ++ A  +  + +  G +    
Sbjct: 294 KLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNAN 353

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           +YS L+     +  +    +L+  MKS    P  +T N LI    +G    + + +  DM
Sbjct: 354 TYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDM 413

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK 417
               + P+  TY  ++ AC +    E    +L     + ++P+   +  +I      + +
Sbjct: 414 VEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVI----EAFGQ 469

Query: 418 ARTLNEHVLSFNS-----GRPQIE 436
           A    E +++FN+       P IE
Sbjct: 470 AALYEEALVAFNTMHEVGSNPSIE 493



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 162/379 (42%), Gaps = 20/379 (5%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           +  VS  + SY  LI    R GR    ++LL+ M+ + +      Y+    N C      
Sbjct: 169 SQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNT-VINACARGGLD 227

Query: 78  KEAF-RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
            E     F  + +    P + T+N L+S CA     + A  V R + + G+  D   Y+ 
Sbjct: 228 WEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSH 287

Query: 133 LITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           L+ T  K  +++ + + +         PD   +N L+ A  +SG++  A  V  +M A  
Sbjct: 288 LVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA- 346

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
               P+  T   L+     +G+ D  R+++  +   N       Y I I    + G ++ 
Sbjct: 347 -GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKE 405

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
             +++ DM ++ + PD      +I   G  G  E A +ILQ      I     +Y+ ++ 
Sbjct: 406 VVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIE 465

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
           A   A  +++AL  +  M  +   P++ T ++L+ +   G  + ++  +LS +   G+  
Sbjct: 466 AFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPR 525

Query: 365 NTITYSILLVACERKDDVE 383
           N  T++  + A ++    E
Sbjct: 526 NRDTFNAQIEAYKQGGKFE 544



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/396 (19%), Positives = 166/396 (41%), Gaps = 20/396 (5%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           H Y  +I    R+G + +C+++ ++M  +G+      Y A   N        + +     
Sbjct: 142 HIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTA-LINAYGRNGRYETSLELLD 200

Query: 86  LVPN----PTLSTFNMLMSVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
            + N    P++ T+N +++ CA    D EG   +   ++  G++ D   Y TL++ CA  
Sbjct: 201 RMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIR 260

Query: 141 G---KVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G   + + +F  +      PD   ++ L+   G+   +++  D+L EM +      PD  
Sbjct: 261 GLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSL--PDIT 318

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +   L++A A +G +  A  V+  +           Y++ +N   Q+G ++    ++ +M
Sbjct: 319 SYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEM 378

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
                 PD    + LI+  G  G  +    +  +   + I   + +Y  ++ AC      
Sbjct: 379 KSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLH 438

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           + A ++ ++M +  + P+      +I A        + +   + M  +G  P+  T+  L
Sbjct: 439 EDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSL 498

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L +  R   V+    +LS+  + G+  N   F   I
Sbjct: 499 LYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQI 534



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 73/305 (23%), Positives = 136/305 (44%), Gaps = 15/305 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P ++++N+L+   A S   + A  V   +Q AG   +   Y+ L+    +SG+ D + + 
Sbjct: 315 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL 374

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  N  PD   +N LI   G+ G       +  +M  E   ++PD  T   ++ AC
Sbjct: 375 FLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEE--NIEPDMETYEGIIFAC 432

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD- 260
              G  + AR++ + +   +I  + + YT  I    Q   +E A   ++ M + G  P  
Sbjct: 433 GKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSI 492

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           E F S L  FA   G V+ +  IL    + GI     ++++ + A      +++A++ Y 
Sbjct: 493 ETFHSLLYSFA-RGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYV 551

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA---CE 377
            M+  +  P   T+ A+++       + +  E   +MK+  + P+ + Y ++L      E
Sbjct: 552 DMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTE 611

Query: 378 RKDDV 382
           R DDV
Sbjct: 612 RWDDV 616



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 111/494 (22%), Positives = 188/494 (38%), Gaps = 70/494 (14%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L +Y+ L+    +  R+ +  DLL +M   G L     Y+       KS  +IKEA   F
Sbjct: 282 LTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKS-GSIKEAMGVF 340

Query: 85  KLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
             +      P  +T+++L+++   S   +   Q+   ++ +    D   Y  LI    + 
Sbjct: 341 HQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEG 400

Query: 141 GKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE--------- 183
           G          D + EN++PD   +  +I ACG+ G  + A  +L  M A          
Sbjct: 401 GYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAY 460

Query: 184 ----------------------VHPV--DPDHITIGALMKACANAGQVDRAREVYKMIHK 219
                                 +H V  +P   T  +L+ + A  G V  +  +   +  
Sbjct: 461 TGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVD 520

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
             I    + +   I    Q G +E A   Y DM K    PDE  L A++     A  V+ 
Sbjct: 521 SGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDE 580

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
             E  +E K   I   I+ Y  ++      + W    EL E M S ++      +  +I 
Sbjct: 581 CREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIK 640

Query: 340 ALCDGDQLPKTME-VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
              D D   + +E VL  + S G       Y+ LL A       E    +L++A + G+ 
Sbjct: 641 GDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLF 700

Query: 399 PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV--YREAIVAGTI 456
           P L             + K    N+ V S +  R      +T+L++ +    + ++ G +
Sbjct: 701 PEL-------------FRK----NKLVWSVDVHRMSEGGMYTALSVWLNDINDMLLKGDL 743

Query: 457 PTVEVVSKVLGCLQ 470
           P + VV  V G L+
Sbjct: 744 PQLAVVVSVRGQLE 757


>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
 gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
          Length = 607

 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 149/375 (39%), Gaps = 48/375 (12%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM 146
           P P +STFN L+S    + +  G  ++   ++EA +K D   Y  L+    K+G V DA+
Sbjct: 127 PAPDVSTFNSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILLNRLCKAGLVGDAL 186

Query: 147 ---------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
                      +V  D V+ N ++    + G +  A   + E   +VH   P+ +T   L
Sbjct: 187 KVLDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDAIVFVDERMRQVHGCAPNTVTYNCL 246

Query: 198 MKACANAGQVDRAREVYKMIHKYNI----------------------------------- 222
             AC   G +D A ++ + + K  +                                   
Sbjct: 247 ADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIVGGLCRVGRVGAALDFFREKRTTWL 306

Query: 223 --KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
             +G    Y+  ++      +   A  ++ +M  +G  PD V    +I     AG++  A
Sbjct: 307 EARGNAVTYSTLVSAFLHCNNVALAMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDA 366

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
             I    K  G  +   +Y+ L+G     K   +A +L+E MK   L+P V T N L++ 
Sbjct: 367 CNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLLSC 426

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           LC         E+L +M   G  P+ +T+  L+    +    +  L +     E  + PN
Sbjct: 427 LCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPN 486

Query: 401 LVMFKCIIG-MCSRR 414
            V++  +I  +C  R
Sbjct: 487 TVIYNTLIDFLCKSR 501



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 164/394 (41%), Gaps = 21/394 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKG------LLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           NRL + G + + + +L+ M   G      ++ ++ V       + + Q AI       + 
Sbjct: 174 NRLCKAGLVGDALKVLDRMSSPGSDVCADIVILNTVVDG-LCKIGRLQDAIVFVDERMRQ 232

Query: 87  VPN--PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           V    P   T+N L   C    D + A Q++  +++ G+  +     T++    + G+V 
Sbjct: 233 VHGCAPNTVTYNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIVGGLCRVGRVG 292

Query: 145 AMFENVKPDR----------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           A  +  +  R          V ++ L++A      V  A ++  EM  + +P  PD +  
Sbjct: 293 AALDFFREKRTTWLEARGNAVTYSTLVSAFLHCNNVALAMELFHEMADQGYP--PDAVMY 350

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             ++     AG++  A  +   + K   K   + Y I I    +      A  ++++M  
Sbjct: 351 FTMISGLTQAGRLVDACNIAASMKKAGFKLDRKAYNILIGGFCRKKRLHEAHQLFEEMKG 410

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G+ PD    + L+     AG   A  E+L    + G    ++++ +L+     A    +
Sbjct: 411 AGLQPDVYTYNTLLSCLCKAGDFSAVDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDE 470

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           AL+++  M   +++P     N LI  LC   ++   +++  +M+   +  N  TY+ LL 
Sbjct: 471 ALKIFRSMGEARIQPNTVIYNTLIDFLCKSREVDVAIKLFDEMRENNVPANVTTYNALLK 530

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             + K+  E    L+ Q KE+   P+ V    ++
Sbjct: 531 GLQDKNMPEKAFELMDQMKEERCTPDYVTMDVLM 564



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 4/164 (2%)

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           D +      PD    ++L+   G AG +    E+    +   +   I++Y  L+     A
Sbjct: 120 DSLAAGAPAPDVSTFNSLLSALGRAGNLRGMTELFTSMREASVKPDIVTYGILLNRLCKA 179

Query: 310 KNWQKALELYEHMKS--IKLKPTVSTMNALITALCDGDQLPKTMEVLSD-MKSL-GLCPN 365
                AL++ + M S    +   +  +N ++  LC   +L   +  + + M+ + G  PN
Sbjct: 180 GLVGDALKVLDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDAIVFVDERMRQVHGCAPN 239

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           T+TY+ L  AC R  D+++   ++ + +++GV PN++    I+G
Sbjct: 240 TVTYNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIVG 283


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 177/395 (44%), Gaps = 54/395 (13%)

Query: 30  HSYNRLIRQ----GRISECIDLLEDMERK-GLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           ++Y  L+R     G +   +DLL +ME++ G+     +Y+     +CKS K + EA    
Sbjct: 19  YTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGK-VPEAMEVV 77

Query: 85  KLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TT 136
           K + +    P + TFN L++ +C + +  E A QVL  ++ +G  A+   Y TLI   ++
Sbjct: 78  KNMKDGACKPDVVTFNTLIAGLCKAGRLDE-AQQVLDEMERSGFAANLVTYNTLINGLSS 136

Query: 137 CAKSGKVDAMFENVK--PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
             +SG+   + + +   PD   +NA+I    +SG +DRA+  L EM        PD  T 
Sbjct: 137 AGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAG-CSPDTFTY 195

Query: 195 GALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             L+     +  + +A E+ + MI + +             CC+                
Sbjct: 196 SILINGLCKSSNLRKADELLQEMIGRKD-------------CCASV-------------- 228

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
                   V  + L+D    A  ++ A E+L      G +  +++YS+++       +  
Sbjct: 229 --------VAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVD 280

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           K   L E M S   KP V T   L+T LC   ++ +   ++  M   G  PN +TYS++ 
Sbjct: 281 KGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVF 340

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
               + D +++   LL+  ++ G + ++V F+ ++
Sbjct: 341 DGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLL 375


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 124/263 (47%), Gaps = 3/263 (1%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P   VF+AL +   + G ++ A      M      V P   +  A +   + AG+ D +R
Sbjct: 60  PGFGVFDALFSVLVELGMLEAAGQCFLRMTK--FRVLPKARSCNAFLHRLSKAGEGDLSR 117

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           + ++ +    I  T   Y I I    + GD   A S+++ M K G+ PD V  + LID  
Sbjct: 118 DFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGY 177

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
           G  G ++ +  + +E K  G    +I+Y++L+ +    K   +A E +  MK   LKP V
Sbjct: 178 GKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNV 237

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            + + LI ALC    +   ++   DM  +GL PN  TYS L+ A  +  ++    ML  +
Sbjct: 238 ISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADE 297

Query: 392 AKEDGVIPNLVMFKCII-GMCSR 413
             ++ V  N+V +  ++ G+C  
Sbjct: 298 MLQEHVDLNIVTYTTLLDGLCEE 320



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/333 (23%), Positives = 156/333 (46%), Gaps = 11/333 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           PT+ T+N+++       D   A  +   +++ GL  D   Y TLI    K G +D    +
Sbjct: 130 PTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCL 189

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE +K     PD + +NALI +  +   + RAF+   EM  +   + P+ I+   L+ A 
Sbjct: 190 FEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDK--DLKPNVISYSTLIDAL 247

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G +  A + +  + +  +      Y+  I+   + G+   A  + D+M ++ V  + 
Sbjct: 248 CKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNI 307

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + L+D     G +  A E+ +     G++  + +Y++L+      ++  KA+EL+  
Sbjct: 308 VTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNE 367

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+   +KP +     ++  LC   +L +   ++++MK  G+  N + Y+ L+ A  +  +
Sbjct: 368 MREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGN 427

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
               + LL + ++ G    +V F  +I G+C R
Sbjct: 428 RTEAINLLEEMRDLGTEVTVVTFCALIDGLCKR 460



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 92/400 (23%), Positives = 176/400 (44%), Gaps = 19/400 (4%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  + +YN +I    ++G +     L E M++ GL   D V +    +       + E+
Sbjct: 128 IAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTP-DIVTYNTLIDGYGKIGLLDES 186

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F+ +      P + T+N L++     K    AF+  R +++  LK +   Y+TLI  
Sbjct: 187 VCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDA 246

Query: 137 CAKSGK--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K G         VD     + P+   +++LI A  ++G +  AF +  EM  E   VD
Sbjct: 247 LCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQE--HVD 304

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
            + +T   L+      G ++ A E+++ + K  +    + YT  I+   +    + A  +
Sbjct: 305 LNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMEL 364

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +++M +K + PD +    ++       K+E    I+ E K  GI    + Y++LM A   
Sbjct: 365 FNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFK 424

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           A N  +A+ L E M+ +  + TV T  ALI  LC    + + +     M    L PN   
Sbjct: 425 AGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAV 484

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           Y+ L+    + + +     L  + ++  +IP+ + +  +I
Sbjct: 485 YTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMI 524



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/429 (18%), Positives = 163/429 (37%), Gaps = 89/429 (20%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + G + E + L E+M+  G       Y+A   + CK  K +  AF FF+ 
Sbjct: 169 TYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKF-KGMLRAFEFFRE 227

Query: 87  VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL-----------KADCK--- 128
           + +    P + +++ L+         + A +    +   GL            A+CK   
Sbjct: 228 MKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGN 287

Query: 129 ---------------------LYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNA 159
                                 YTTL+    + G ++   E         V P+   + A
Sbjct: 288 LGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTA 347

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
           LI    +  ++D+A ++  EM  +   + PD +  G ++    +  +++  + +   + +
Sbjct: 348 LIHGHIKVRSMDKAMELFNEMREK--DIKPDILLWGTIVWGLCSESKLEECKIIMTEMKE 405

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
             I   P +YT                                    L+D    AG    
Sbjct: 406 SGIGANPVIYT-----------------------------------TLMDAYFKAGNRTE 430

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A  +L+E ++ G  V ++++ +L+         Q+A+  +  M    L+P V+   ALI 
Sbjct: 431 AINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALID 490

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
            LC  + +    ++  +M+   + P+ I Y+ ++    +  + +  L + ++  E G+  
Sbjct: 491 GLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIEL 550

Query: 400 NLVMFKCII 408
           +L  +  ++
Sbjct: 551 DLYAYTSLV 559



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/392 (19%), Positives = 164/392 (41%), Gaps = 21/392 (5%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D+   + SY+ LI    ++G +   I    DM R GLL  +  Y +     CK+   + E
Sbjct: 232 DLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGN-LGE 290

Query: 80  AF----RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           AF       +   +  + T+  L+  +C     +E A ++ R + +AG+  + + YT LI
Sbjct: 291 AFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNE-AEELFRAMGKAGVTPNLQAYTALI 349

Query: 135 TTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               K   +D   E        ++KPD +++  ++        ++    ++ EM      
Sbjct: 350 HGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIG 409

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
            +P  +    LM A   AG    A  + + +     + T   +   I+   + G  + A 
Sbjct: 410 ANP--VIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAI 467

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
             +  M    + P+    +ALID       +  A ++  E +++ +    I+Y++++   
Sbjct: 468 YYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGN 527

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
               N+Q+AL +   M  + ++  +    +L+  L    Q+ +  + L++M   G+ P+ 
Sbjct: 528 LKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDE 587

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
              + LL       +++  + L ++  E G+I
Sbjct: 588 TLCTRLLRKHYELGNIDEAIELQNELVEKGLI 619



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 89/215 (41%), Gaps = 12/215 (5%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMF 147
           NP + T   LM     + +   A  +L  +++ G +     +  LI    K G V +A++
Sbjct: 411 NPVIYT--TLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIY 468

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                   +++P+  V+ ALI    ++  +  A  +  EM  +   + PD I   A++  
Sbjct: 469 YFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDK--NMIPDKIAYTAMIDG 526

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G    A  +   + +  I+     YT  +   SQ G  + A     +M  KG+IPD
Sbjct: 527 NLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPD 586

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
           E   + L+      G ++ A E+  E   +G+  G
Sbjct: 587 ETLCTRLLRKHYELGNIDEAIELQNELVEKGLIHG 621


>gi|30679784|ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g02830, chloroplastic; Flags: Precursor
 gi|332003140|gb|AED90523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 852

 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 124/553 (22%), Positives = 223/553 (40%), Gaps = 114/553 (20%)

Query: 132 TLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           T+I  C   G          D + EN+KP+  V N+L+       + D  + +    N +
Sbjct: 272 TMIDVCGLCGDYVKSRYIYEDLLKENIKPNIYVINSLMNV----NSHDLGYTLKVYKNMQ 327

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV----YTIAINCCSQT 239
           +  V  D  +   L+K C  AG+VD A+++YK   +    G  ++    Y   I   +  
Sbjct: 328 ILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLDAFTYCTIIKVFADA 387

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
             W++A  V DDM   GV P+    S+LI    +AG VE A  + +E    G       +
Sbjct: 388 KMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEPNSQCF 447

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKL-------------------------------- 327
           + L+ AC  A  + +A  L++  K   +                                
Sbjct: 448 NILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPNILKNNGPGSLVNR 507

Query: 328 ---------------KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
                          KPT +T N L+ A   G    +  E++ +MKSLGL PN IT+S L
Sbjct: 508 NSNSPYIQASKRFCFKPTTATYNILLKAC--GTDYYRGKELMDEMKSLGLSPNQITWSTL 565

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS---------------RRYEK 417
           +  C    DVE  + +L      G  P++V +   I +C+               RRY+ 
Sbjct: 566 IDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSLFEEMRRYQ- 624

Query: 418 ARTLNEHVLSFNSGRPQIENKWTSL-----ALMVYREAIVAGTIPTVEVVSKVLGCLQLP 472
              +  + +++N+   +  +K+ SL      L +Y++   AG  P    + +++      
Sbjct: 625 ---IKPNWVTYNT-LLKARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELI------ 674

Query: 473 YNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEI 532
              +  E +++  G S D +         D  G+   R  SLL E  +  +    +    
Sbjct: 675 --EEWCEGVIQENGQSQDKIS--------DQEGDNAGRPVSLLIEKVATHMQERTAGN-- 722

Query: 533 PVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDI 592
            + +D + L    A++ +L +L+ ++     G  + + ++L+ +   +  +V G++ I +
Sbjct: 723 -LAIDLQGLTKIEARLVVLAVLRMIKEDYMRGDVVID-DVLIIIGTDEANTVSGKQEITV 780

Query: 593 AERTTQAIAALLR 605
            E    A+  LLR
Sbjct: 781 QE----ALVKLLR 789



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 167/377 (44%), Gaps = 75/377 (19%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLED-------MERKGLLDMDKVYHARFFNVCKSQKA 76
           DV+  + SYN L++   ++  +DL +D       ME  GLL +D                
Sbjct: 330 DVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLD---------------- 373

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              AF            T+  ++ V A +K  + A +V   ++  G+  +   +++LI+ 
Sbjct: 374 ---AF------------TYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISA 418

Query: 137 CAKSGKVDA---MFENV-----KPDRVVFNALITACGQSGAVDRAFDVL-----AEMNAE 183
           CA +G V+    +FE +     +P+   FN L+ AC ++   DRAF +      + +N  
Sbjct: 419 CANAGLVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNES 478

Query: 184 VHPVD---------PDHIT---IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
           ++  D         P+ +     G+L+   +N+  +  ++       ++  K T   Y I
Sbjct: 479 LYADDIVSKGRTSSPNILKNNGPGSLVNRNSNSPYIQASK-------RFCFKPTTATYNI 531

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            +  C    D+     + D+M   G+ P+++  S LID  G +G VE A  IL+   + G
Sbjct: 532 LLKACGT--DYYRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAG 589

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
               +++Y++ +  C+  K  + A  L+E M+  ++KP   T N L+ A      L +  
Sbjct: 590 TRPDVVAYTTAIKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVR 649

Query: 352 EVLS---DMKSLGLCPN 365
           + L+   DM++ G  PN
Sbjct: 650 QCLAIYQDMRNAGYKPN 666



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 144/343 (41%), Gaps = 17/343 (4%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+      ++  C   G   ++R +Y+ + K NIK  P +Y I       + D  +   V
Sbjct: 265 PNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIK--PNIYVINSLMNVNSHDLGYTLKV 322

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS----VGIISYSSLMG 304
           Y +M    V  D    + L+     AG+V+ A +I +EAK    S    +   +Y +++ 
Sbjct: 323 YKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLDAFTYCTIIK 382

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
             ++AK W+ AL++ + MKS+ + P   T ++LI+A  +   + +   +  +M + G  P
Sbjct: 383 VFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEP 442

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 424
           N+  ++ILL AC      +    L    K   V  +L     +         K RT + +
Sbjct: 443 NSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIV--------SKGRTSSPN 494

Query: 425 VLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN 484
           +L  N     +     S  +   +      T  T  ++ K  G         + E  +++
Sbjct: 495 ILKNNGPGSLVNRNSNSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDE--MKS 552

Query: 485 LGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 527
           LG+S + +  S L  +  G G+ +  A  +L    S G  P V
Sbjct: 553 LGLSPNQITWSTLIDMCGGSGDVEG-AVRILRTMHSAGTRPDV 594


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 110/448 (24%), Positives = 190/448 (42%), Gaps = 41/448 (9%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSGKVDAM------ 146
           T   L  +C + +  E    +L  + E G   D   Y T+I + C  S   +A+      
Sbjct: 203 TNTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRM 262

Query: 147 --FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
              +   PD V +  +I      G + +A ++  EM  +   V P+ +T  +++ A   A
Sbjct: 263 TKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQK--GVVPNVVTYNSIVHALCKA 320

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
             +D+A  V + +   +I+     YT  I+  S  G W+ A  ++ +MT++G+IPD V  
Sbjct: 321 RAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTF 380

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++L+D      + + A EI      +G    IISYS L+   +    +     L+  M  
Sbjct: 381 NSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTD 440

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             +       N LI A      + + + + ++M+  G+ PN +TY+ ++ A  R   +  
Sbjct: 441 NGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLAD 500

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSL 442
            +  LSQ    G+ PN V++  +I G C+     KA+ L   ++     RP I   ++S+
Sbjct: 501 AMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNI-TFFSSI 559

Query: 443 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 502
              +  E  V                     NA     LV ++G   D        SLID
Sbjct: 560 IHSLCNEGRV--------------------MNAQDVFNLVIHIGDRPDIF---TFNSLID 596

Query: 503 GF---GEYDPRAFSLLEEAASFGIVPCV 527
           G+   G+ D +AF +L+   S G  P V
Sbjct: 597 GYCLVGKMD-KAFGVLDAMVSAGTEPDV 623



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 151/338 (44%), Gaps = 20/338 (5%)

Query: 47  LLEDMERKGLLDMDKVYHARFFNVC---KSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVC 102
           LL  M   G +     Y+    ++C   +SQ+A+    R  K    +P + ++ M++   
Sbjct: 223 LLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGL 282

Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MFEN-VKPDR 154
               +   A  +   + + G+  +   Y +++    K+  +D        MF+N ++PD 
Sbjct: 283 FMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDE 342

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           V + A+I      G    A  +  EM  E   + PD +T  +LM +     +  R++E  
Sbjct: 343 VTYTAMIHGYSCLGRWKEAAKMFKEMTRE--GLIPDIVTFNSLMDSLC---KHKRSKEAA 397

Query: 215 KMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           ++ H    KG  P++  Y+I ++  +  G +    +++  MT  G++ D    + LI+  
Sbjct: 398 EIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAH 457

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
              G ++ A  I  E + QG+S  +++Y++++ A         A+E    M SI LKP  
Sbjct: 458 AKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNT 517

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
              ++LI   C    L K  E++S+M   G+    IT+
Sbjct: 518 VVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITF 555



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 129/602 (21%), Positives = 233/602 (38%), Gaps = 116/602 (19%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA------------------ 76
           L  +G IS+  +L  +M +KG++     Y++    +CK++                    
Sbjct: 282 LFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPD 341

Query: 77  ----------------IKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLR 116
                            KEA + FK +      P + TFN LM      K S+ A ++  
Sbjct: 342 EVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFH 401

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGK---VDAMFENVKPDRVV-----FNALITACGQSG 168
            +   G K D   Y+ L+   A  G+   ++ +F ++  + +V     FN LI A  + G
Sbjct: 402 SIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRG 461

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +D A  +  EM  +   V P+ +T   ++ A    G++  A E                
Sbjct: 462 MMDEALLIFTEMRGQ--GVSPNVVTYATVIAALCRMGRLADAMEKLS------------- 506

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEA 287
                                  M   G+ P+ V   +LI  F  H   ++A  E++ E 
Sbjct: 507 ----------------------QMISIGLKPNTVVYHSLIQGFCTHGDLIKAK-ELVSEM 543

Query: 288 KNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            +QGI    I  +SS++ +  N      A +++  +  I  +P + T N+LI   C   +
Sbjct: 544 MDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGK 603

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           + K   VL  M S G  P+ +TYS L+    +   ++ GL+L  +     V P  V +  
Sbjct: 604 MDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSL 663

Query: 407 II-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 465
           ++ G+                 F +GR       TS A  ++ E I +GT  ++   + +
Sbjct: 664 VLDGL-----------------FRAGR-------TSAAKKMFHEMIESGTAMSISTYTII 699

Query: 466 LGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR--AFSLLEEAASFGI 523
           L  L      D    L   LG      + + L ++I    +   R  A  L    ++ G+
Sbjct: 700 LQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGL 759

Query: 524 VPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMS 583
           VP  S   + ++   ++  +  A +   ++ K      A  ++L N  I + ++K +I+ 
Sbjct: 760 VPNASTYGVMIINLLKEGSVEEADIMFSSMEKT---GCAPSSRLLNDIIRMLLQKGEIVK 816

Query: 584 VG 585
            G
Sbjct: 817 AG 818



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 101/480 (21%), Positives = 201/480 (41%), Gaps = 101/480 (21%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +  +H Y+ L   GR  E   + ++M R+GL+     +++   ++CK +++ KEA   F 
Sbjct: 346 TAMIHGYSCL---GRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRS-KEAAEIFH 401

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAF----QVLRLVQEAGLKADCKLYTTLITTC 137
            +      P + ++++L+   A+    EG F     +   + + G+ AD   +  LI   
Sbjct: 402 SIATKGHKPDIISYSILLHGYAT----EGRFVDMNNLFHSMTDNGIVADSHCFNILINAH 457

Query: 138 AKSGKV------------------------------------DAMFE-------NVKPDR 154
           AK G +                                    DAM +        +KP+ 
Sbjct: 458 AKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNT 517

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           VV+++LI      G + +A ++++EM  +  P  P+     +++ +  N G+V  A++V+
Sbjct: 518 VVYHSLIQGFCTHGDLIKAKELVSEMMDQGIP-RPNITFFSSIIHSLCNEGRVMNAQDVF 576

Query: 215 KMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI---- 268
            ++   +I   P+++T    I+     G  + A  V D M   G  PD V  S LI    
Sbjct: 577 NLV--IHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYF 634

Query: 269 -------------------------------DFAGHAGKVEAAFEILQEAKNQGISVGII 297
                                          D    AG+  AA ++  E    G ++ I 
Sbjct: 635 KSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSIS 694

Query: 298 SYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           +Y+ ++ G C N     +A+ L+  + ++ LK  ++ +N +I AL    +  +  ++ + 
Sbjct: 695 TYTIILQGLCRN-NCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFAS 753

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
           + + GL PN  TY ++++   ++  VE   ++ S  ++ G  P+  +   II M  ++ E
Sbjct: 754 VSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKGE 813



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 71/354 (20%), Positives = 137/354 (38%), Gaps = 20/354 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL----VPNP 90
           L R GR+++ ++ L  M   GL     VYH+     C     IK      ++    +P P
Sbjct: 492 LCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRP 551

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
            ++ F+ ++    +      A  V  LV   G + D   + +LI      GK+D  F   
Sbjct: 552 NITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVL 611

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                   +PD V ++ LI    +SG +D    +  EM  +   V P  +T   ++    
Sbjct: 612 DAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCK--RVKPTTVTYSLVLDGLF 669

Query: 203 NAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            AG+   A+   KM H+    GT      YTI +    +    + A +++  +    +  
Sbjct: 670 RAGRTSAAK---KMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKF 726

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +   L+ +I       + E A ++       G+     +Y  ++       + ++A  ++
Sbjct: 727 EIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMF 786

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             M+     P+   +N +I  L    ++ K    +S +    +     T S+L+
Sbjct: 787 SSMEKTGCAPSSRLLNDIIRMLLQKGEIVKAGYYMSKVDGTIISLEASTTSLLI 840


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 168/392 (42%), Gaps = 21/392 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N   ++G   E   +L  M  +G+      Y      +CK  +A ++A   F L+     
Sbjct: 123 NGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRA-RKALDLFDLMTEKGE 181

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144
            P+  T+N+L++          AF++   + E G + +   Y TLI     +GK+D    
Sbjct: 182 EPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMK 241

Query: 145 ---AMFEN---VKPDRVVFNALITACGQSGAVDRAFDVLAEM--NAEVHPVDPDHITIGA 196
              ++ E+   V+PD + FN +I    + G +D+A ++   M        +   HI IG 
Sbjct: 242 LFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGE 301

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
            +K+    G +D+A E++K +HK  +  +   Y++ I+   +     FA  ++  M   G
Sbjct: 302 YIKS----GIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISG 357

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + P     + L+        +E A  + QE K        IS++ ++     A +   A 
Sbjct: 358 LSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAK 417

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           EL   M+ + L P   T ++ I  L    Q+ +       M + G+ P+   Y  L+   
Sbjct: 418 ELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGF 477

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              D++E  + LL Q  + GVI +L +   I+
Sbjct: 478 GLNDEIEEVINLLRQMADMGVILDLEITNSIL 509



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 169/393 (43%), Gaps = 17/393 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNP 90
           L ++GR+ E + LL +M+RKGL ++D V ++   +   S+  +      F  +     +P
Sbjct: 55  LCKEGRVEEAMRLLGEMKRKGL-EVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISP 113

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
            +  ++ L++          A  VL  + E G++ D   YT +I    K G+        
Sbjct: 114 NVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLF 173

Query: 144 DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M E   +P  V +N LI    + G +  AF +   M  +   ++   ++   L+    
Sbjct: 174 DLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEV--VSYNTLIMGLC 231

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPD 260
           N G++D A +++  + +      P+V T    I    + G  + A  +YD M ++G   +
Sbjct: 232 NNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGN 291

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
                 LI     +G ++ A E+ +     G+     +YS ++           A  L+ 
Sbjct: 292 LFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFS 351

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            MK   L PT+   N L+ +LC    L +   +  +MK     P+TI+++I++    +  
Sbjct: 352 RMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAG 411

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           D+     LL+  ++ G+ P+   +   I   S+
Sbjct: 412 DIHSAKELLNDMQQMGLTPDAYTYSSFINRLSK 444



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 6/274 (2%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           N+ PD V +N +I    +   +++A D+L EM  E    +P+  T   LM      G+V+
Sbjct: 5   NILPDIVSYNTIINGLCKEKRLEKAVDLLVEM--EGSSCEPNSFTYCILMDGLCKEGRVE 62

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A  +   + +  ++    VY+  I+     G  +   +++D+M +KG+ P+ V  S LI
Sbjct: 63  EAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLI 122

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +     G    A  +L     +GI   + +Y+ ++G        +KAL+L++ M     +
Sbjct: 123 NGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEE 182

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P+  T N LI  LC    +    ++   M   G     ++Y+ L++       ++  + L
Sbjct: 183 PSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKL 242

Query: 389 LSQAKEDG--VIPNLVMFKCII-GMCSR-RYEKA 418
            S   EDG  V P+++ F  +I G+C   R +KA
Sbjct: 243 FSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKA 276



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 151/344 (43%), Gaps = 14/344 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-----TCAKSGKV- 143
           P   T+ +LM         E A ++L  ++  GL+ D  +Y+TLI+      C   GK  
Sbjct: 43  PNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKAL 102

Query: 144 -DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M E  + P+ VV++ LI    + G    A  VL  M      + PD  T   ++   
Sbjct: 103 FDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTE--RGIQPDVYTYTCMIGGL 160

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+  +A +++ ++ +   + +   Y + IN   + G    A  +++ M +KG   + 
Sbjct: 161 CKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEV 220

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQKALELY 319
           V  + LI    + GK++ A ++       G  +   +I++++++          KA+E+Y
Sbjct: 221 VSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIY 280

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M        + T + LI        + K ME+   +  LGL P++ TYS+++    + 
Sbjct: 281 DTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKM 340

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKARTL 421
             +     L S+ K  G+ P L  +  ++  +C     E+AR L
Sbjct: 341 HMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRL 384



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 79/394 (20%), Positives = 157/394 (39%), Gaps = 54/394 (13%)

Query: 18  HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H      +   +++Y  +I    + GR  + +DL + M  KG       Y+     +CK 
Sbjct: 139 HTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCK- 197

Query: 74  QKAIKEAFRFFKLVPNP-----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG--LKAD 126
           +  I +AF+ F+ +         +S   ++M +C + K  E A ++   + E G  ++ D
Sbjct: 198 EGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDE-AMKLFSSLLEDGNYVEPD 256

Query: 127 CKLYTTLITTCAKSGKVDAMFE--NVKPDRVVFNALITA---CGQ---SGAVDRA----- 173
              + T+I    K G++D   E  +   +R  F  L T     G+   SG +D+A     
Sbjct: 257 VITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWK 316

Query: 174 -------------FDVLAEMNAEVHPVD---------------PDHITIGALMKACANAG 205
                        + V+ +   ++H ++               P       LM +     
Sbjct: 317 RVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKES 376

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +++AR +++ + + N +     + I I+   + GD   A  + +DM + G+ PD    S
Sbjct: 377 SLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYS 436

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           + I+     G++E A          GI+     Y SL+         ++ + L   M  +
Sbjct: 437 SFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADM 496

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
            +   +   N+++T LC+  +    ME+L +  S
Sbjct: 497 GVILDLEITNSILTFLCNSAEHLHVMELLPNFSS 530



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 147/334 (44%), Gaps = 35/334 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKG-LLDMDKV-YHARFFNVCKSQKAIKEAFRFF 84
           SYN LI      G++ E + L   +   G  ++ D + ++     +CK  +  K    + 
Sbjct: 222 SYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYD 281

Query: 85  KLVPNPT---LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            ++   +   L T ++L+     S   + A ++ + V + GL      Y+ +I    K  
Sbjct: 282 TMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMH 341

Query: 142 KVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            ++    +F  +K     P    +N L+ +  +  ++++A  +  EM       +PD I+
Sbjct: 342 MLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKES--NCEPDTIS 399

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDD 251
              ++     AG +  A+E+   + +  +  TP+ YT +  IN  S+ G  E A   +D 
Sbjct: 400 FNIMIDGTLKAGDIHSAKELLNDMQQMGL--TPDAYTYSSFINRLSKLGQMEEAKGAFDS 457

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-ISYSSLMGACSNAK 310
           M   G+ PD     +LI   G   ++E    +L++  + G+ + + I+ S L   C++A 
Sbjct: 458 MIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSILTFLCNSA- 516

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITAL-CD 343
                    EH+  ++L P  S+ ++  T++ CD
Sbjct: 517 ---------EHLHVMELLPNFSSESSGGTSISCD 541



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 1/141 (0%)

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           I+SY++++      K  +KA++L   M+    +P   T   L+  LC   ++ + M +L 
Sbjct: 10  IVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRLLG 69

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
           +MK  GL  + + YS L+     K  ++ G  L  +  E G+ PN+V++ C+I G C + 
Sbjct: 70  EMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCKKG 129

Query: 415 YEKARTLNEHVLSFNSGRPQI 435
             +  T   H ++    +P +
Sbjct: 130 LWREATAVLHTMTERGIQPDV 150



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 68/158 (43%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M +  ++PD V  + +I+      ++E A ++L E +         +Y  LM        
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            ++A+ L   MK   L+  V   + LI+  C    L +   +  +M   G+ PN + YS 
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           L+    +K        +L    E G+ P++  + C+IG
Sbjct: 121 LINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIG 158


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 104/440 (23%), Positives = 194/440 (44%), Gaps = 40/440 (9%)

Query: 16  GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARF-------- 67
           G+  + A  + + +HS N  +     S  ID      ++G+LD+ + Y  R         
Sbjct: 371 GEDLDKAELLYKNMHSMNLPLNDVTYSILID---SFCKRGMLDVAESYFGRMIEDGIRET 427

Query: 68  ---FNV-----CKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLR 116
              +N      CK        F + K++     PT +TF  L+S        E AF++ R
Sbjct: 428 IYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYR 487

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKV-------DAMFE-NVKPDRVVFNALITACGQSG 168
            + E  +      +T LI     + ++       D M E  +KP  V +N +I    ++ 
Sbjct: 488 EMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAH 547

Query: 169 AVDRAFDVLAEM--NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
            +D+AF++L +M  N  V    PD  T   L+    + G+V  A++    +HK N+K   
Sbjct: 548 NMDKAFELLEDMLHNGLV----PDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNE 603

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             Y+  ++     G    A S   +M ++G+  D V  + LID A     ++  F +L++
Sbjct: 604 MCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKK 663

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
             +QG+    + Y+S++ A S   +++K+ E  + M + K  P V T  A +  LC   +
Sbjct: 664 MYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGE 723

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           + +   +   M +  + PN++TY   L +  ++ +++    L  +  + G++ N   +  
Sbjct: 724 IDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLK-GLLANTATYNI 782

Query: 407 II-GMC--SRRYEKARTLNE 423
           +I G C   R  E  + L+E
Sbjct: 783 LIRGFCKLGRLIEATKVLSE 802



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 165/355 (46%), Gaps = 18/355 (5%)

Query: 69  NVCKSQKAI--KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
           + C++++ I   E+ RF     + ++ T+N+L+           A +V + ++E GLK D
Sbjct: 233 DFCRAKEKILWMESNRF-----DLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKED 287

Query: 127 CKLYTTLITTCAKSGKVD----AMFENVK----PDRVVFNALITACGQSGAVDRAFDVLA 178
              Y TL+    +  + D     M E V+    P     + L+    + G +D A+D++ 
Sbjct: 288 VVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVV 347

Query: 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238
           ++        P+     AL+ A      +D+A  +YK +H  N+      Y+I I+   +
Sbjct: 348 KLGR--FGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCK 405

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G  + A S +  M + G+       ++LI+     G + AA  +  +  N+G+     +
Sbjct: 406 RGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATT 465

Query: 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
           +++L+         +KA +LY  M   ++ P+V T  ALI  LC  +++ +  ++  +M 
Sbjct: 466 FTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMV 525

Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
              + P  +TY++++    +  +++    LL     +G++P+   ++ +I G+CS
Sbjct: 526 ERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCS 580



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/445 (22%), Positives = 191/445 (42%), Gaps = 41/445 (9%)

Query: 1   MQDGGKNMLQFPYP---NGKHANYAHDVSEQLHSYNRLIRQG------------------ 39
           ++DG +  + +PY    NG H  +  D+S     Y ++I +G                  
Sbjct: 420 IEDGIRETI-YPYNSLING-HCKFG-DLSAAEFLYTKMINEGLEPTATTFTTLISGYCKD 476

Query: 40  -RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTF 95
            ++ +   L  +M  K +      + A  + +C + +  + +  F ++V     PT  T+
Sbjct: 477 LQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTY 536

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMF 147
           N+++     + + + AF++L  +   GL  D   Y  LI+    +G+V        D   
Sbjct: 537 NVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHK 596

Query: 148 ENVKPDRVVFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
           +N+K + + ++AL+   CGQ G +  A     EM      ++ D +    L+        
Sbjct: 597 KNLKLNEMCYSALLHGYCGQ-GRLTEALSASCEMIQR--GINMDLVCHAVLIDGAMKQQD 653

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           + R   + K ++   ++    +YT  I+  S+ G ++ +    D M  +   P+ V  +A
Sbjct: 654 MKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTA 713

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
            ++     G+++ A  + ++     IS   ++Y   + + +   N ++A +L+  M    
Sbjct: 714 FMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEMLKGL 773

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           L  T +T N LI   C   +L +  +VLS+M   G+ P+ ITYS ++    R  DV   +
Sbjct: 774 LANT-ATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAV 832

Query: 387 MLLSQAKEDGVIPNLVMFKCIIGMC 411
            L       GV P+ V F  +I  C
Sbjct: 833 ELWDTMLRKGVEPDSVAFNLLIYGC 857



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 151/354 (42%), Gaps = 22/354 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I    +   + +  +LLEDM   GL+     Y      +C + + +  A  F   
Sbjct: 535 TYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGR-VSAAKDFIDD 593

Query: 87  VPNPTLSTFNM-----LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +    L    M     L   C   + +E       ++Q  G+  D   +  LI    K  
Sbjct: 594 LHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQR-GINMDLVCHAVLIDGAMKQQ 652

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
            +  +F        + ++PD V++ ++I A  + G+  ++ + L  M  E     P+ +T
Sbjct: 653 DMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTE--KCFPNVVT 710

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             A M      G++DRA  +++ +   NI      Y   ++  ++ G+ + A  ++ +M 
Sbjct: 711 YTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEML 770

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           K G++ +    + LI      G++  A ++L E    GI    I+YS+++     + +  
Sbjct: 771 K-GLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVG 829

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            A+EL++ M    ++P     N LI   C    L K  E+ +DM S GL P  I
Sbjct: 830 AAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQI 883



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 89/411 (21%), Positives = 174/411 (42%), Gaps = 21/411 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L ++G I    DL+  + R G L    VY+A    +CK +  + +A   +K + +  L  
Sbjct: 333 LRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGED-LDKAELLYKNMHSMNLPL 391

Query: 95  FNMLMSVCASSKDSEGAFQVL-----RLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
            ++  S+   S    G   V      R++++ G++     Y +LI    K G + A    
Sbjct: 392 NDVTYSILIDSFCKRGMLDVAESYFGRMIED-GIRETIYPYNSLINGHCKFGDLSAAEFL 450

Query: 146 ----MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               + E ++P    F  LI+   +   V++AF +  EMN +   + P   T  AL+   
Sbjct: 451 YTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEK--EIAPSVYTFTALIYGL 508

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            +  ++  A +++  + +  IK T   Y + I    +  + + A  + +DM   G++PD 
Sbjct: 509 CSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDT 568

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
                LI      G+V AA + + +   + + +  + YS+L+ G C   +   +AL    
Sbjct: 569 YTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGR-LTEALSASC 627

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    +   +     LI        + +   +L  M   GL P+++ Y+ ++ A  ++ 
Sbjct: 628 EMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEG 687

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFN 429
             +     L     +   PN+V +   + G+C     ++A  L E +L+ N
Sbjct: 688 SFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTAN 738



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 121/281 (43%), Gaps = 10/281 (3%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           VKPD    +A+I +  +     RA + +  M  E +  D   +T   L+      G V  
Sbjct: 214 VKPDPYTCSAVIRSLCELKDFCRAKEKILWM--ESNRFDLSIVTYNVLIHGLCKGGGVLE 271

Query: 210 AREVYKMIHKYNIKGTPEVY-TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
           A EV K + +  +K     Y T+ +  C +   ++    + ++M + G +P E  +S L+
Sbjct: 272 ALEVRKSLREKGLKEDVVTYCTLVLGFC-RVQQFDDGICLMNEMVELGFVPTEAAVSGLV 330

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           D     G +++A++++ +    G    +  Y++L+ A    ++  KA  LY++M S+ L 
Sbjct: 331 DGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLP 390

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
               T + LI + C    L         M   G+      Y+ L+    +  D+     L
Sbjct: 391 LNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFL 450

Query: 389 LSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA----RTLNE 423
            ++   +G+ P    F  +I G C   + EKA    R +NE
Sbjct: 451 YTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNE 491



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 73/148 (49%)

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M    ++P+   LSA+++      K    +E+  E+ N G+     + S+++ +    K+
Sbjct: 174 MLGNTLLPEVRTLSAILNGLLRIRKFILVWEVFDESVNAGVKPDPYTCSAVIRSLCELKD 233

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           + +A E    M+S +   ++ T N LI  LC G  + + +EV   ++  GL  + +TY  
Sbjct: 234 FCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCT 293

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIP 399
           L++   R    + G+ L+++  E G +P
Sbjct: 294 LVLGFCRVQQFDDGICLMNEMVELGFVP 321



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 4/208 (1%)

Query: 226 PEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
           PEV T++  +N   +   +     V+D+    GV PD    SA+I           A E 
Sbjct: 181 PEVRTLSAILNGLLRIRKFILVWEVFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEK 240

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           +   ++    + I++Y+ L+          +ALE+ + ++   LK  V T   L+   C 
Sbjct: 241 ILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCR 300

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
             Q    + ++++M  LG  P     S L+    +K +++    L+ +    G +PNL +
Sbjct: 301 VQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFV 360

Query: 404 FKCII-GMC-SRRYEKARTLNEHVLSFN 429
           +  +I  +C     +KA  L +++ S N
Sbjct: 361 YNALINALCKGEDLDKAELLYKNMHSMN 388


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 141/326 (43%), Gaps = 23/326 (7%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMSVCASSKDSEGAFQVLR 116
           F+ C+         R+FKLV              +L  FN+LM       D   A  V  
Sbjct: 96  FDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFD 155

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG 168
            + + GL+     Y TL+    + G +D  F          V+PD   ++ LI    +  
Sbjct: 156 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKES 215

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +D A ++  EM   V  + P+ +T   L+      G+VD A E+YK +    +      
Sbjct: 216 XMDDANELFDEM--LVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJIT 273

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   +    + GD   A  + D+M  KG+ PD+   + LID     G ++AAFE  +   
Sbjct: 274 YNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMI 333

Query: 289 NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
            + I +  ++Y++L+ G C   ++   A ++   M S+ LKP   T   +I   C    +
Sbjct: 334 QENIRLDDVAYTALISGLCQEGRS-XDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDV 392

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILL 373
            K  ++L +M+  G  P  +TY++L+
Sbjct: 393 WKGSKLLKEMQRNGHVPXVVTYNVLM 418



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 108/265 (40%), Gaps = 6/265 (2%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDV--LAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           + D  VF+ LITA  +SG +  A +   L   +    P D     +  LMK         
Sbjct: 58  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKL----RYFK 113

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
                Y+ I +     +   + I ++   + GD   A  V+D +TK G+ P  V  + L+
Sbjct: 114 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLM 173

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +     G ++  F +    +  G+   + +YS L+           A EL++ M    L 
Sbjct: 174 NGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLV 233

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P   T   LI   C   ++   ME+   M S  L P+ ITY+ L+    +K D+     L
Sbjct: 234 PNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGL 293

Query: 389 LSQAKEDGVIPNLVMFKCIIGMCSR 413
           + +    G+ P+   +  +I  C +
Sbjct: 294 IDEMXXKGLKPDKFTYTTLIDGCCK 318



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 102/257 (39%), Gaps = 23/257 (8%)

Query: 31  SYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           SYN L    IR G + E   L   M   G+      Y      +CK +  + +A   F  
Sbjct: 168 SYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCK-ESXMDDANELFDE 226

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                LVPN    TF  L+     +   + A ++ + +    L  D   Y TL+    K 
Sbjct: 227 MLVKGLVPNXV--TFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKK 284

Query: 141 GK-------VDAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G        +D M  + +KPD+  +  LI  C + G +D AF+    M  E   +  D +
Sbjct: 285 GDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQE--NIRLDDV 342

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              AL+      G+   A ++ + +    +K     YT+ IN   + GD      +  +M
Sbjct: 343 AYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEM 402

Query: 253 TKKGVIPDEVFLSALID 269
            + G +P  V  + L++
Sbjct: 403 QRNGHVPXVVTYNVLMN 419


>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
 gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
          Length = 900

 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/355 (21%), Positives = 162/355 (45%), Gaps = 15/355 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N  ++ G++++ + + ++ME  G+   +K Y +   N          AF  F+ +     
Sbjct: 446 NLYVKIGKVAKALSISKEMESCGIKHNNKTY-SMLINGFIHLHDFANAFAIFEEMLRSGL 504

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P  + +N+L+       + + A  +L  +Q+  ++   + +  +I   A +G + +  +
Sbjct: 505 QPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAGDMKSALD 564

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            +         P  + +NALI    +   V RA  VL +M+  +  + P+  T   +M+ 
Sbjct: 565 TLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMS--IAGITPNEHTYTIIMRG 622

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A +G + +A E +  I +  +K    +Y   +  C ++G  + A +V  +M+ + +  +
Sbjct: 623 YAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQKIPRN 682

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               + LID     G V  A +++++ K  G+   I +Y+S + AC  A + Q+A ++ E
Sbjct: 683 TFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIE 742

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            M  + LKP V T   LI          + ++   +MK  GL P+  +Y  L+ +
Sbjct: 743 EMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKLAGLKPDEASYHCLVTS 797



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 168/388 (43%), Gaps = 13/388 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLS 93
           + G +    +L+ +ME  G+     VYH+        Q   K    F +L      P++ 
Sbjct: 380 QSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFERLKECGFKPSII 439

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDAMFEN- 149
           ++  L+++         A  + + ++  G+K + K Y+ LI             A+FE  
Sbjct: 440 SYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFEEM 499

Query: 150 ----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               ++PDR ++N LI A  + G +DRA  +L +M  E   + P +     +++  A AG
Sbjct: 500 LRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKER--MQPSNRAFRPIIEGYAVAG 557

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
            +  A +   ++ +     T   Y   I+   +    + A SV D M+  G+ P+E   +
Sbjct: 558 DMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKMSIAGITPNEHTYT 617

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            ++     +G +  AFE   + K  G+ + +  Y +L+ AC  +   Q AL +   M   
Sbjct: 618 IIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQ 677

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           K+       N LI        + +  +++  MK  G+ PN  TY+  + AC +  D++  
Sbjct: 678 KIPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRA 737

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
             ++ +  + G+ PN+  +  +I   +R
Sbjct: 738 EKVIEEMVDVGLKPNVKTYTTLIKGWAR 765



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 138/321 (42%), Gaps = 15/321 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPN 89
           N  I     +    + E+M R GL     +Y+      CK     +AI    +  K    
Sbjct: 481 NGFIHLHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQ 540

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P+   F  ++   A + D + A   L L++ +G       Y  LI    +  KV      
Sbjct: 541 PSNRAFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSV 600

Query: 144 -DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
            D M    + P+   +  ++     SG + +AF+   ++      +  D      L++AC
Sbjct: 601 LDKMSIAGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKES--GLKLDVYIYETLLRAC 658

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPD 260
             +G++  A  V + +    I     +Y I I+  ++ GD WE A  +   M + GV P+
Sbjct: 659 CKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWE-AEDLMKQMKEDGVPPN 717

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               ++ I+    AG ++ A ++++E  + G+   + +Y++L+   +      +AL+ +E
Sbjct: 718 IHTYTSYINACCKAGDMQRAEKVIEEMVDVGLKPNVKTYTTLIKGWARVSLPDRALKCFE 777

Query: 321 HMKSIKLKPTVSTMNALITAL 341
            MK   LKP  ++ + L+T+L
Sbjct: 778 EMKLAGLKPDEASYHCLVTSL 798



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 140/342 (40%), Gaps = 47/342 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK---SGKVDAM 146
           P    F  L+   A ++D  GA   +  ++  GL+     Y+ LI+  AK   S   D +
Sbjct: 296 PNAFVFTSLVHAYAVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNL 355

Query: 147 FENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F+  K      + ++++ +I A  QSG ++RA +++ EM  +                  
Sbjct: 356 FKEAKTKLSSLNGIIYSNIIHAHCQSGNMERAEELVCEMEED------------------ 397

Query: 202 ANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                +D   +VY  M+H Y I           N C           V++ + + G  P 
Sbjct: 398 ----GIDAPIDVYHSMMHGYTIIQNE-------NKC---------LVVFERLKECGFKPS 437

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            +    L++     GKV  A  I +E ++ GI     +YS L+    +  ++  A  ++E
Sbjct: 438 IISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHDFANAFAIFE 497

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    L+P  +  N LI A C    + + + +L  M+   + P+   +  ++       
Sbjct: 498 EMLRSGLQPDRAIYNLLIEAFCKMGNMDRAICILEKMQKERMQPSNRAFRPIIEGYAVAG 557

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
           D++  L  L   +  G +P ++ +  +I    R+++  R ++
Sbjct: 558 DMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVS 599



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 116/267 (43%), Gaps = 3/267 (1%)

Query: 143 VDAMFENV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           V + FE + KP R  F  +I    + G    A      M A    ++P+     +L+ A 
Sbjct: 251 VVSAFERIPKPSRREFGLMIVYYAKRGDKHHARATFENMRA--RGIEPNAFVFTSLVHAY 308

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A A  +  A    + +    ++ T   Y+I I+  ++  D + A +++ +   K    + 
Sbjct: 309 AVARDMRGALSCVEEMKSEGLELTIVTYSILISGFAKINDSQSADNLFKEAKTKLSSLNG 368

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  S +I     +G +E A E++ E +  GI   I  Y S+M   +  +N  K L ++E 
Sbjct: 369 IIYSNIIHAHCQSGNMERAEELVCEMEEDGIDAPIDVYHSMMHGYTIIQNENKCLVVFER 428

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +K    KP++ +   L+       ++ K + +  +M+S G+  N  TYS+L+       D
Sbjct: 429 LKECGFKPSIISYGCLLNLYVKIGKVAKALSISKEMESCGIKHNNKTYSMLINGFIHLHD 488

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
                 +  +    G+ P+  ++  +I
Sbjct: 489 FANAFAIFEEMLRSGLQPDRAIYNLLI 515


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 150/336 (44%), Gaps = 11/336 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
           +P   T N+L++     +  +  F VL  V + GL+     +TTLI    K+G+      
Sbjct: 123 SPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALE 182

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              D +    +PD   +  +I    + G    A  ++ +M  EV    PD +T   L+ +
Sbjct: 183 LFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKM-GEV-GCQPDVVTYSTLIDS 240

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                 V+ A +++  +    I  T   YT  I        W+ A ++ ++MT   ++PD
Sbjct: 241 LCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPD 300

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  S LID     G V  A  +L+     G+   +I+Y+SLM   S      +A +L++
Sbjct: 301 IVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFD 360

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M +   KP V + + LI   C   ++ +  ++ ++M   GL PNT++Y+ L+ A  +  
Sbjct: 361 VMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLG 420

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY 415
            +     L      +G +P+L  +  ++ G C + Y
Sbjct: 421 KLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGY 456



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 163/387 (42%), Gaps = 13/387 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N L + G  ++ ++L +DM  +G       Y      +CK  +    A    K+      
Sbjct: 169 NGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQ 228

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDAM 146
           P + T++ L+      +    A  +   ++  G+      YT+LI    + ++  +  AM
Sbjct: 229 PDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAM 288

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  N+ PD V F+ LI    + G V  A  VL  M      V+P+ IT  +LM   
Sbjct: 289 LNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTE--MGVEPNVITYNSLMHGY 346

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           +   +V  AR+++ ++     K     Y+I IN        + A  ++++M  +G+ P+ 
Sbjct: 347 SLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNT 406

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LI      GK+  A E+ ++    G    + +YS L+          KA  L+  
Sbjct: 407 VSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRA 466

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+   LKP +     LI ++C    L    ++ S++   GL P+   Y+ ++    ++  
Sbjct: 467 MQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGL 526

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ++  L    + +EDG  PN   +  II
Sbjct: 527 LDEALEAFRKMEEDGCPPNEFSYNVII 553



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 136/274 (49%), Gaps = 7/274 (2%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMN--AEVHPVDPDHITIGALMKACANAGQVDR 209
           P  + FN L++A  +   + + +D +  ++   E+  + P+  T+  L+        VD 
Sbjct: 88  PCIIQFNKLLSAIVR---MRQYYDAVISLSKQMELAGLSPNTCTLNILINCFCLMQHVDL 144

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
              V   + K  ++ T   +T  IN   + G++  A  ++DDM  +G  PD    + +I+
Sbjct: 145 GFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIIN 204

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G+  AA  ++++    G    +++YS+L+ +    +   +AL+++ +MK+  + P
Sbjct: 205 GLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISP 264

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
           TV +  +LI  LC   +  +   +L++M SL + P+ +T+S+L+    ++ +V     +L
Sbjct: 265 TVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVL 324

Query: 390 SQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTL 421
               E GV PN++ +  ++   S + E  +AR L
Sbjct: 325 KTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKL 358



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 82/385 (21%), Positives = 161/385 (41%), Gaps = 25/385 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + G  +    L++ M   G       Y     ++CK  + + EA   F  +     
Sbjct: 204 NGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKD-RLVNEALDIFSYMKAKGI 262

Query: 89  NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
           +PT+ ++  L+  +C+ S+  E +  +L  +    +  D   ++ LI    K G V    
Sbjct: 263 SPTVVSYTSLIQGLCSFSRWKEAS-AMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQ 321

Query: 144 ---DAMFE-NVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGA 196
                M E  V+P+ + +N+L+        V  A   FDV+     +     PD  +   
Sbjct: 322 GVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCK-----PDVFSYSI 376

Query: 197 LMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           L+       ++D A++++ +MIH+     T   YT  I+   Q G    A  ++ DM   
Sbjct: 377 LINGYCMVKRIDEAKQLFNEMIHQGLTPNTVS-YTTLIHAFCQLGKLREARELFKDMHTN 435

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G +PD    S L++     G +  AF + +  +   +   ++ Y+ L+ +   + N   A
Sbjct: 436 GYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHA 495

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            +L+  +    L+P V     +I  LC    L + +E    M+  G  PN  +Y++++  
Sbjct: 496 RKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRG 555

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPN 400
             +  D    + L+ + ++ G + +
Sbjct: 556 FLQHKDESRAVQLIGEMRDKGFVAD 580


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 127/260 (48%), Gaps = 9/260 (3%)

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
           G+ G V+  +  +      V+ V  D + I  L K     G+  +A +V + +  +    
Sbjct: 208 GRIGVVESVYKEMIRRRIGVNVVTFD-VVINGLCKV----GKFQKAGDVVEDMKAWGFSP 262

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
           +   Y   I+   + G    A ++  +M  K + P+E+  + LID       V AA ++ 
Sbjct: 263 SVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVF 322

Query: 285 QEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           +E + QG+   +++Y+SL+ G CSN K   +AL L + M  + LKP V T NALI   C 
Sbjct: 323 EEMQRQGLQPNVVTYNSLINGLCSNGK-LDEALGLQDKMSGMGLKPNVVTYNALINGFCK 381

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
              L +  E+L D+   GL PN IT++ L+ A  +   ++   +L S   + GV PN+  
Sbjct: 382 KKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVST 441

Query: 404 FKC-IIGMCSR-RYEKARTL 421
           + C I+G C     ++AR L
Sbjct: 442 YNCLIVGFCREGNVKEARKL 461



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 149/322 (46%), Gaps = 13/322 (4%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFEN- 149
           TF+++++        + A  V+  ++  G       Y T+I    K+GK+   DA+ +  
Sbjct: 231 TFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEM 290

Query: 150 ----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
               + P+ + FN LI    +   V  A  V  EM  +   + P+ +T  +L+    + G
Sbjct: 291 VAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEM--QRQGLQPNVVTYNSLINGLCSNG 348

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++D A  +   +    +K     Y   IN   +    + A  + DD+ K+G+ P+ +  +
Sbjct: 349 KLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFN 408

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LID  G AG+++ AF +     + G+   + +Y+ L+       N ++A +L + M+  
Sbjct: 409 TLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGN 468

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---GLCPNTITYSILLVACERKDDV 382
            LK  + T N L+ ALC   +  K + +L +M  +   G   N +TY++L+     K  +
Sbjct: 469 GLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKL 528

Query: 383 EVGLMLLSQAKEDGVIPNLVMF 404
           E    LL++  E G+IPN   +
Sbjct: 529 EEANRLLNEMLEKGLIPNRTTY 550



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 130/281 (46%), Gaps = 5/281 (1%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           V F+ +I    + G   +A DV+ +M A      P  IT   ++     AG++ +A  + 
Sbjct: 230 VTFDVVINGLCKVGKFQKAGDVVEDMKA--WGFSPSVITYNTIIDGYCKAGKMFKADALL 287

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           K +    I      + I I+   +  +   A  V+++M ++G+ P+ V  ++LI+     
Sbjct: 288 KEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSN 347

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           GK++ A  +  +    G+   +++Y++L+      K  ++A E+ + +    L P V T 
Sbjct: 348 GKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITF 407

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
           N LI A     ++     + S M   G+CPN  TY+ L+V   R+ +V+    L  + + 
Sbjct: 408 NTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEG 467

Query: 395 DGVIPNLVMFKCIIGMCSRRYEK---ARTLNEHVLSFNSGR 432
           +G+  +LV +  ++    ++ E     R L+E  L    GR
Sbjct: 468 NGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGR 508



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 146/354 (41%), Gaps = 51/354 (14%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N L + G+  +  D++EDM+  G       Y+      CK+ K  K      ++V    +
Sbjct: 237 NGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIH 296

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   TFN+L+      ++   A +V   +Q  GL+ +   Y +LI     +GK+D     
Sbjct: 297 PNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGL 356

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   +KP+ V +NALI    +   +  A ++L ++      + P+ IT   L+ A 
Sbjct: 357 QDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGK--RGLAPNVITFNTLIDAY 414

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AG++D A  +  M                                   M   GV P+ 
Sbjct: 415 GKAGRMDDAFLLRSM-----------------------------------MLDTGVCPNV 439

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + LI      G V+ A ++ +E +  G+   +++Y+ L+ A       +KA+ L + 
Sbjct: 440 STYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDE 499

Query: 322 MKSIKLK---PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           M  ++ K     + T N LI   C+  +L +   +L++M   GL PN  TY IL
Sbjct: 500 MTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDIL 553



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 120/256 (46%), Gaps = 2/256 (0%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           + ++ + L+ A  ++G +D A +      A  +      ++   ++ +    G++     
Sbjct: 158 NSIIVDMLVWAYVKNGEMDLALEGFDR--AGDYGFRLSALSCNPMLVSLVKEGRIGVVES 215

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           VYK + +  I      + + IN   + G ++ A  V +DM   G  P  +  + +ID   
Sbjct: 216 VYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNTIIDGYC 275

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            AGK+  A  +L+E   + I    I+++ L+      +N   A +++E M+   L+P V 
Sbjct: 276 KAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQGLQPNVV 335

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T N+LI  LC   +L + + +   M  +GL PN +TY+ L+    +K  ++    +L   
Sbjct: 336 TYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDI 395

Query: 393 KEDGVIPNLVMFKCII 408
            + G+ PN++ F  +I
Sbjct: 396 GKRGLAPNVITFNTLI 411


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 176/393 (44%), Gaps = 21/393 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           ++R  R    I L + MERK +      +       C   K   A+    +  KL  +P 
Sbjct: 89  VVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPD 148

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
           + TFN L+  +C   + SE A  +   + E   + +   +TTL+    + G++       
Sbjct: 149 VVTFNTLLHGLCVEDRVSE-ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALL 207

Query: 144 DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M E+ ++P ++ +  ++    + G    A D+L +M  E+  + P+ +   A++ +  
Sbjct: 208 DRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKME-EISHIIPNVVIYSAIIDSLC 266

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYT---IAINCCSQTGDWEFACSVYDDMTKKGVIP 259
             G+   A+ ++  + +  I   P+++T   + +  CS +G W  A  +  +M ++ + P
Sbjct: 267 KDGRHSDAQNLFTEMQEKGI--FPDLFTYNSMIVGFCS-SGRWSDAEQLLQEMLERKISP 323

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  +ALI+     GK   A E+  E   +GI    I+YSS++           A  ++
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M +    P + T N LI   C   ++   ME+L +M   GL  +T TY+ L+      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            D+   L LL +    G+ P++V    ++ G+C
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLC 476



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 178/406 (43%), Gaps = 32/406 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAFRFFKL 86
           N L R+GRI E + LL+ M   GL      Y      +CK      +   +++      +
Sbjct: 192 NGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHI 251

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---- 142
           +PN  + +  ++ S+C   + S+ A  +   +QE G+  D   Y ++I     SG+    
Sbjct: 252 IPNVVIYS-AIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 143 ---VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
              +  M E  + PD V +NALI A  + G    A ++  EM      + P+ IT  +++
Sbjct: 310 EQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP--RGIIPNTITYSSMI 367

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                  ++D A  ++ ++           +   I+        +    +  +MT+ G++
Sbjct: 368 DGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLV 427

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALE 317
            D    + LI      G + AA ++LQE  + G+   I++  +L+ G C N K  + ALE
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK-LKDALE 486

Query: 318 LYEHMKSIK-----------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
           +++ M+  K           ++P V T N LI+ L +  +  +  E+  +M   G+ P+T
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDT 546

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           ITYS ++    ++  ++    +          PN+V F  +I G C
Sbjct: 547 ITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 157/359 (43%), Gaps = 26/359 (7%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI    ++G+  E  +L ++M  +G++     Y +     CK Q  +  A
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRLDAA 379

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F L+     +P L TFN L+     +K  +   ++L  + E GL AD   Y TLI  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 137 CAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAE----- 183
               G ++A  + ++        PD V  + L+     +G +  A ++   M        
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 184 -VHP---VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
             HP   V+PD  T   L+    N G+   A E+Y+ +    I      Y+  I+   + 
Sbjct: 500 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
              + A  ++D M  K   P+ V  + LI+    AG+V+   E+  E   +GI    I+Y
Sbjct: 560 SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITY 619

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
            +L+       N   AL++++ M S  + P   T+  ++T L   ++L + + +L  ++
Sbjct: 620 ITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 76/372 (20%), Positives = 148/372 (39%), Gaps = 19/372 (5%)

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            ++ A D+ ++M     P+ P  +    LM       + D    +Y+ + +  I+     
Sbjct: 59  GLEDAIDLFSDM-LRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYS 116

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           +TI I C        FA S +  +TK G+ PD V  + L+       +V  A  +  +  
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMF 176

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
                  ++++++LM          +A+ L + M    L+PT  T   ++  +C      
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTV 236

Query: 349 KTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC- 406
             +++L  M+ +  + PN + YS ++ +  +         L ++ +E G+ P+L  +   
Sbjct: 237 SALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 407 IIGMCSR-RYEKA---------RTLNEHVLSFNSGRPQI--ENKWTSLALMVYREAIVAG 454
           I+G CS  R+  A         R ++  V+++N+       E K+   A  +Y E +  G
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFE-AEELYDEMLPRG 355

Query: 455 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAF 512
            IP     S ++         D  E +   +     +       +LIDG+   +      
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 513 SLLEEAASFGIV 524
            LL E    G+V
Sbjct: 416 ELLHEMTETGLV 427


>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
 gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
           mitochondrial-like [Cucumis sativus]
          Length = 502

 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 145/330 (43%), Gaps = 14/330 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P+  TF ++     ++   + A +V   ++E G   D   + T++    KS +V+  + N
Sbjct: 145 PSSKTFAIIAERFVAAGKPDRAIKVFLSMREHGCPQDLHSFNTILDILCKSKRVEMAYNN 204

Query: 150 V--------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +        K D V +N +           +A +VL EM      + P   T   L+K  
Sbjct: 205 LFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVER--GLTPTITTYNILLKGY 262

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             AGQ+  A E +  + +  ++     YT  ++     G+ + A  V+++M  +G++P  
Sbjct: 263 FRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFNEMVGEGILPST 322

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              +A+I        VE A  + +E   +G    + +Y+ ++    +A N  KA+E  E 
Sbjct: 323 ATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLFHAGNMDKAMEFIER 382

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC---ER 378
           MK+   +P V T N  I   CD   + K + +   M   G  PN  TY++L+ A    ++
Sbjct: 383 MKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMFEKMGQ-GSLPNLDTYNVLISAMFVRKK 441

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            +D+ V   LL +  + G IP    F  ++
Sbjct: 442 SEDLVVAGKLLLEMVDRGFIPRKFTFNRVL 471



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/272 (20%), Positives = 113/272 (41%), Gaps = 24/272 (8%)

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
           AI+   +  D++   ++   M  + + P     + + +    AGK + A ++    +  G
Sbjct: 118 AIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMREHG 177

Query: 292 ISVGIISYSSLMGACSNAKNWQKALE-LYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
               + S+++++     +K  + A   L++ ++  K K  V + N +    C   + PK 
Sbjct: 178 CPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRG-KFKADVVSYNIIANGWCLIKRTPKA 236

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-- 408
           +EVL +M   GL P   TY+ILL    R   ++       Q KE  V  ++V +  ++  
Sbjct: 237 LEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVHG 296

Query: 409 -GMCSRRYEKARTLNEHV--------LSFNS------GRPQIENKWTSLALMVYREAIVA 453
            G+        +  NE V         ++N+       +  +EN     A++++ E +  
Sbjct: 297 FGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVEN-----AVLMFEEMVKK 351

Query: 454 GTIPTVEVVSKVLGCLQLPYNADIRERLVENL 485
           G +P +   + V+  L    N D     +E +
Sbjct: 352 GYVPNLTTYNVVIRGLFHAGNMDKAMEFIERM 383


>gi|356573733|ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
           mitochondrial-like [Glycine max]
          Length = 752

 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 153/338 (45%), Gaps = 13/338 (3%)

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMFENVKP 152
           N ++   A ++  E +F   + +  AG K D + Y +LIT     G   K   M+E+++ 
Sbjct: 163 NRVIRYLAKAEKLEVSFCCFKKILNAGCKVDTETYNSLITLFLNKGLPYKAFEMYESMEK 222

Query: 153 -----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
                D   +  +I    +SG +D AF +  EM  +V    P      +L+ +   AG++
Sbjct: 223 AGCSLDGSTYELMIPNLAKSGRLDAAFKLFQEM--KVRGFRPGLNVFASLVDSMGKAGRL 280

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A +VY  +  Y  K  P +Y   I    ++G  E A  ++D+M   G  P+    + +
Sbjct: 281 DSAMKVYMEMRGYGYKPPPTIYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYTLI 340

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I+    +GK+E A     + +  G      +Y+ L+   + +     A++LY  M +  L
Sbjct: 341 IESHAKSGKLEIAMSTFLDMEKAGFLPTPSTYACLLEMHAASGQIDPAMKLYNSMTNAGL 400

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           +P +ST   L+T L +   +    ++L +MK++G   +     IL+V   ++  V++ L 
Sbjct: 401 RPGLSTYTVLLTLLANKKLVDVAAKILLEMKAMGYSVDVTASDILMVYI-KEGSVDLALR 459

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNE 423
            L      G+  N  + + +   C +   +E A+ L E
Sbjct: 460 WLRFMGSSGIRTNNFIIRQLFESCMKSGLFESAKPLLE 497



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 155/346 (44%), Gaps = 13/346 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
           T+N L+++  +      AF++   +++AG   D   Y  +I   AKSG++DA F+     
Sbjct: 196 TYNSLITLFLNKGLPYKAFEMYESMEKAGCSLDGSTYELMIPNLAKSGRLDAAFKLFQEM 255

Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                +P   VF +L+ + G++G +D A  V  EM    +   P      +L+++   +G
Sbjct: 256 KVRGFRPGLNVFASLVDSMGKAGRLDSAMKVYMEMRG--YGYKPPPTIYVSLIESYVKSG 313

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           +++ A  ++  +     +    +YT+ I   +++G  E A S + DM K G +P     +
Sbjct: 314 KLETALRLWDEMRMAGFRPNFGLYTLIIESHAKSGKLEIAMSTFLDMEKAGFLPTPSTYA 373

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L++    +G+++ A ++     N G+  G+ +Y+ L+   +N K    A ++   MK++
Sbjct: 374 CLLEMHAASGQIDPAMKLYNSMTNAGLRPGLSTYTVLLTLLANKKLVDVAAKILLEMKAM 433

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
                V+  + L+  + +G  +   +  L  M S G+  N      L  +C +    E  
Sbjct: 434 GYSVDVTASDILMVYIKEG-SVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKSGLFESA 492

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSG 431
             LL          +L+++  I+    R  E+      H++S  S 
Sbjct: 493 KPLLETYVNSAAKVDLILYTSILAHLVRCQEEKN--ERHLMSILSA 536


>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
          Length = 607

 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/397 (22%), Positives = 171/397 (43%), Gaps = 58/397 (14%)

Query: 90  PTLSTFNMLMSVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---A 145
           PT  ++N ++  C     D        R + + GL  D K + +L+  C++ G ++   A
Sbjct: 14  PTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAACSRVGHLEDARA 73

Query: 146 MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           +F+      +  D   +N  I A  + G ++ A  VL +M A+   V P+ +T   L+  
Sbjct: 74  VFDEMIHLGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAK--GVKPNVVTYSTLIDG 131

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            +   + + A ++ + +    I+     Y   +    + G +    +V D+M + G+  D
Sbjct: 132 YSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKD 191

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  ++LI+  G  G+++    ++Q+ + +G++  +++YS+L+   S A     A  +Y 
Sbjct: 192 TVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYL 251

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-- 378
             K   LKP V   ++ I  L     +   + +L+DM  +G+ PN +TY+ ++ A  +  
Sbjct: 252 DFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSK 311

Query: 379 ---KDDVEVGLM----------------------------------------LLSQAKED 395
              +DD EVG M                                        L  +  + 
Sbjct: 312 VMMEDDSEVGDMGIVGVYGGQIVRVANPVSRGGRSATDVRMRRSQELFFILELFQKMVQQ 371

Query: 396 GVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNS 430
           GV PN+V F  I+  CSR   +E A  L E +  F++
Sbjct: 372 GVRPNVVTFSAILNACSRCNSFEDAALLLEQLRLFDN 408



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 130/295 (44%), Gaps = 38/295 (12%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           ++P  V +NA+I ACG+ G VD  F +          + PD  T  +L+ AC+  G ++ 
Sbjct: 12  LRPTTVSYNAVIDACGK-GGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLAACSRVGHLED 70

Query: 210 AREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
           AR V+ +MIH   I      Y   I+   + G+ E A  V  DM  KGV P+ V  S LI
Sbjct: 71  ARAVFDEMIH-LGIGRDIYTYNTFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLI 129

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           D      K E A ++ ++ K+  I +  + Y++L+     A  + +   + + M+ + ++
Sbjct: 130 DGYSKLEKYEEALKLCEKMKSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIE 189

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL--------------V 374
               T N+LI       +L     ++ DM+  G+ P+ +TYS L+              V
Sbjct: 190 KDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNV 249

Query: 375 ACERKDD---------------------VEVGLMLLSQAKEDGVIPNLVMFKCII 408
             + K+                      +E  L LL+   E G+ PN+V +  II
Sbjct: 250 YLDFKESGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAII 304



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 149/359 (41%), Gaps = 82/359 (22%)

Query: 16  GKHANYAH--DVSEQLH------SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY 63
           GK+A  A+  D  E+L       +YN LI    +QGR+     L++DM ++G+       
Sbjct: 171 GKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIVSILVQDMRKRGV------- 223

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
                                     P++ T++ L+ + + +     AF V    +E+GL
Sbjct: 224 -------------------------APSVLTYSTLIDIYSKAGMHGDAFNVYLDFKESGL 258

Query: 124 KADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFD 175
           K D  L+++ I T AK+G ++             +KP+ V +NA+I A G+S        
Sbjct: 259 KPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKS-------K 311

Query: 176 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
           V+ E ++EV  +    +  G +++      +  R+    +M      + + E++      
Sbjct: 312 VMMEDDSEVGDMGIVGVYGGQIVRVANPVSRGGRSATDVRM------RRSQELF------ 359

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
                   F   ++  M ++GV P+ V  SA+++        E A  +L++ +     V 
Sbjct: 360 --------FILELFQKMVQQGVRPNVVTFSAILNACSRCNSFEDAALLLEQLRLFDNFVY 411

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
            ++Y  L+G+    + W +A  L+  +  +    + +  NAL   L    Q  K  +V+
Sbjct: 412 GVAYGLLVGS---REVWSQAQSLFNQLGRMDSPTSSAFYNALTDVLWHFGQRRKAQQVV 467



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 3/85 (3%)

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKD-DVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           M VL  MK  GL P T++Y+ ++ AC +   D+   L    Q  +DG+ P+   F  ++ 
Sbjct: 1   MGVLESMKGAGLRPTTVSYNAVIDACGKGGVDLRFTLGYFRQMLKDGLCPDRKTFNSLLA 60

Query: 410 MCSR--RYEKARTLNEHVLSFNSGR 432
            CSR    E AR + + ++    GR
Sbjct: 61  ACSRVGHLEDARAVFDEMIHLGIGR 85


>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
 gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
 gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 122/525 (23%), Positives = 210/525 (40%), Gaps = 65/525 (12%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ----KAIKEA 80
           +H +  LIR    +GR+   + LL++M+   L D D V     +NVC         +  A
Sbjct: 203 VHLFTTLIRGFAKEGRVDSALSLLDEMKSSSL-DADIV----LYNVCIDSFGKVGKVDMA 257

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTLIT 135
           ++FF  +      P   T+  ++ V   +   + A ++   + E   +  C   Y T+I 
Sbjct: 258 WKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHL-EKNRRVPCTYAYNTMIM 316

Query: 136 TCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
               +GK D  +  ++        P  + +N ++T   + G VD A  V  EM  +  P 
Sbjct: 317 GYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAP- 375

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN----CCSQTGDWE 243
             +  T   L+     AG++D A E+   + K  +   P V T+ I     C SQ  D  
Sbjct: 376 --NLSTYNILIDMLCRAGKLDTAFELRDSMQKAGL--FPNVRTVNIMVDRLCKSQKLDE- 430

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            AC+++++M  K   PDE+   +LID  G  G+V+ A+++ ++  +       I Y+SL+
Sbjct: 431 -ACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLI 489

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
               N    +   ++Y+ M +    P +  +N  +  +    +  K   +  ++K+    
Sbjct: 490 KNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFV 549

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLN 422
           P+  +YSIL+    +         L    KE G + +   +  +I G C     K   +N
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFC-----KCGKVN 604

Query: 423 EHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLV 482
           +                   A  +  E    G  PTV     V+  L      D    L 
Sbjct: 605 K-------------------AYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLF 645

Query: 483 ENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
           E        L      SLIDGFG+      A+ +LEE    G+ P
Sbjct: 646 EEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 690



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/436 (21%), Positives = 181/436 (41%), Gaps = 54/436 (12%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D +  L +YN LI    R G++    +L + M++ GL    +  +     +CKSQK + E
Sbjct: 372 DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQK-LDE 430

Query: 80  AFRFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A   F+     V  P   TF  L+         + A++V   + ++  + +  +YT+LI 
Sbjct: 431 ACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIK 490

Query: 136 TCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
                G+         D + +N  PD  + N  +    ++G  ++   +  E+ A     
Sbjct: 491 NFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFV- 549

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
            PD  +   L+     AG  +   E++  + +         Y I I+   + G    A  
Sbjct: 550 -PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQ 608

Query: 248 VYDDMTKKGVIP------------------DEVFL-----------------SALIDFAG 272
           + ++M  KG  P                  DE ++                 S+LID  G
Sbjct: 609 LLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
             G+++ A+ IL+E   +G++  + +++SL+ A   A+   +AL  ++ MK +K  P   
Sbjct: 669 KVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQV 728

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
           T   LI  LC   +  K      +M+  G+ P+TI+Y+ ++    +  ++     L  + 
Sbjct: 729 TYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRF 788

Query: 393 KEDGVIPNLVMFKCII 408
           K +G +P+   +  +I
Sbjct: 789 KANGGVPDSACYNAMI 804



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 138/349 (39%), Gaps = 30/349 (8%)

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
           ++  C ++  +   +DV+  M        P       L+ A +     D    +++ + +
Sbjct: 139 MVLGCVKANKLREGYDVVQMMRK--FKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQE 196

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
              + T  ++T  I   ++ G  + A S+ D+M    +  D V  +  ID  G  GKV+ 
Sbjct: 197 LGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDM 256

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A++   E +  G+    ++Y+S++G    A    +A+E++EH++  +  P     N +I 
Sbjct: 257 AWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIM 316

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
                 +  +   +L   ++ G  P+ I Y+ +L    +   V+  L +  + K+D   P
Sbjct: 317 GYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA-P 375

Query: 400 NLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 457
           NL  +  +I M  R  + + A  L + +                           AG  P
Sbjct: 376 NLSTYNILIDMLCRAGKLDTAFELRDSMQK-------------------------AGLFP 410

Query: 458 TVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 506
            V  V+ ++  L      D    + E +            CSLIDG G+
Sbjct: 411 NVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGK 459



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 68/333 (20%), Positives = 147/333 (44%), Gaps = 18/333 (5%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +A+ E  +  + VP+    ++++L+     +  +   +++   ++E G   D + Y  +I
Sbjct: 537 RAMFEEIKARRFVPDA--RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVI 594

Query: 135 TTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               K GKV+  ++          +P  V + ++I    +   +D A+ +  E  A+   
Sbjct: 595 DGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE--AKSKR 652

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIA--INCCSQTGDWE 243
           ++ + +   +L+      G++D   E Y ++ +   KG TP +YT    ++   +  +  
Sbjct: 653 IELNVVIYSSLIDGFGKVGRID---EAYLILEELMQKGLTPNLYTWNSLLDALVKAEEIN 709

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A   +  M +    P++V    LI+      K   AF   QE + QG+    ISY++++
Sbjct: 710 EALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMI 769

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
              + A N  +A  L++  K+    P  +  NA+I  L +G++      +  + +  GL 
Sbjct: 770 SGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLP 829

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
            +  T  +LL    + D +E   ++ +  +E G
Sbjct: 830 IHNKTCVVLLDTLHKNDCLEQAAIVGAVLRETG 862


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 145/326 (44%), Gaps = 23/326 (7%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMSVCASSKDSEGAFQVLR 116
           F+ C+         ++FKLV              +L  FN+LM       D   A  V  
Sbjct: 103 FDTCRKVLEHLMKLKYFKLVWGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 162

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG 168
            + + GL+     Y TL+    + G +D  F          V+PD   ++ LI    +  
Sbjct: 163 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 222

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +D A ++  EM   V  + P+ +T   L+      G+VD A E+YK +   ++      
Sbjct: 223 KMDDANELFDEM--LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLIT 280

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   I    + GD + A  + D+M+ KG+ PD++  + LID     G ++ AFE  +   
Sbjct: 281 YNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMI 340

Query: 289 NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
            + I +  ++Y++L+ G C   ++   A ++   M S+ LKP   T   +I   C    +
Sbjct: 341 QENIXLDDVAYTALISGLCQEGRS-VDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDV 399

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILL 373
            K  ++L +M+  G  P+ +TY++L+
Sbjct: 400 WKGSKLLKEMQRDGHVPSVVTYNVLM 425



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 109/265 (41%), Gaps = 6/265 (2%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDV--LAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           + D  VF+ LITA  +S  +  A +   L   +    P D     +  LMK         
Sbjct: 65  RSDIFVFSGLITAYLESEFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKL----KYFK 120

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
                YK I +     +   + I ++   + GD   A SV+D +TK G+ P  V  + L+
Sbjct: 121 LVWGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 180

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +     G ++  F +       G+   + +YS L+           A EL++ M    L 
Sbjct: 181 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 240

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P   T   LI   C   ++   ME+   M S  L P+ ITY+ L+    +K D++    L
Sbjct: 241 PNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHL 300

Query: 389 LSQAKEDGVIPNLVMFKCIIGMCSR 413
           + +    G+ P+ + +  +I  C +
Sbjct: 301 IDEMSMKGLKPDKITYTTLIDGCCK 325



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 103/257 (40%), Gaps = 23/257 (8%)

Query: 31  SYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           SYN L    IR G + E   L   M   G+      Y      +CK  K + +A   F  
Sbjct: 175 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-MDDANELFDE 233

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                LVPN    TF  L+     +   + A ++ + +    L  D   Y TLI    K 
Sbjct: 234 MLVKGLVPNGV--TFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKK 291

Query: 141 GK-------VDAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G        +D M  + +KPD++ +  LI  C + G +D AF+    M  E   +  D +
Sbjct: 292 GDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQE--NIXLDDV 349

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              AL+      G+   A ++ + +    +K     YT+ IN   + GD      +  +M
Sbjct: 350 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEM 409

Query: 253 TKKGVIPDEVFLSALID 269
            + G +P  V  + L++
Sbjct: 410 QRDGHVPSVVTYNVLMN 426



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 17  KHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           K A  A  V   +++Y+ LI    ++ ++ +  +L ++M  KGL+     +       CK
Sbjct: 196 KSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCK 255

Query: 73  SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           + + +  A   +K + +    P L T+N L+       D + A  ++  +   GLK D  
Sbjct: 256 NGR-VDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKI 314

Query: 129 LYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
            YTTLI  C K G +D  F        EN+  D V + ALI+   Q G    A  +L EM
Sbjct: 315 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREM 374

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
            +    + P+  T   ++      G V +  ++ K + +     +   Y + +N
Sbjct: 375 LSV--GLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMN 426


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 180/395 (45%), Gaps = 21/395 (5%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFK 85
           ++N LI+    +G I + ++  + +  +G   +D+V +    N +CK  + I  A +  K
Sbjct: 142 TFNTLIKGLCLKGHIHQALNFHDKVVAQGF-HLDQVSYGTLINGLCKVGR-ITAALQLLK 199

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            V      P    +NM++     +K    AF +   +    +  D     +LI      G
Sbjct: 200 RVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMG 259

Query: 142 KVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++          + EN+ P    F+ L+ A  + G V  A  +L     +   +  D +T
Sbjct: 260 QLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKK--DIILDVVT 317

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +LM       ++++A++++  +    +    + YT  IN   +    + A +++++M 
Sbjct: 318 YNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMR 377

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
            + +IP+ V  ++LID  G  GK+    +++ E  ++G    II+Y+S++ A     +  
Sbjct: 378 CRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVD 437

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA+ L  ++K   ++P + T   LI  LC   +L    +V  D+   G   +  TY++++
Sbjct: 438 KAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMI 497

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                K   +  L LLS+ +++G IPN   ++ +I
Sbjct: 498 QGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVI 532



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/419 (20%), Positives = 168/419 (40%), Gaps = 82/419 (19%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           P P +  FN ++S    +K    A  + + ++  G+ +D   +  LI   ++ G     F
Sbjct: 66  PTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSF 125

Query: 148 --------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
                   +   P+ + FN LI      G + +A +   ++ A+   +  D ++ G L+ 
Sbjct: 126 SVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHL--DQVSYGTLIN 183

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G++  A ++ K +    ++    +Y + I+   +      A  +Y  M  K + P
Sbjct: 184 GLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISP 243

Query: 260 DEV-----------------------------------FLSALIDFAGHAGKVEAAFEIL 284
           D+                                      S L+D     GKV+ A  +L
Sbjct: 244 DDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMML 303

Query: 285 QEAKNQGISVGIISYSSLM----------------------GACSNAKNW---------- 312
                + I + +++Y+SLM                      G  +N +++          
Sbjct: 304 GVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKI 363

Query: 313 ---QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
               +A+ L+E M+  K+ P V T N+LI  L    ++   ++++ +M   G  PN ITY
Sbjct: 364 KMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITY 423

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
           + +L A  +   V+  + LL+  K+ G+ P++  +  +I G+C S + E A+ + E +L
Sbjct: 424 NSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLL 482



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 114/265 (43%), Gaps = 3/265 (1%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           +N  P  + FN ++++  ++     A  +  +M  E++ +  D  T   L+   +  G  
Sbjct: 64  KNPTPPIIQFNKILSSLVKAKHHSTALSLHQQM--ELNGIVSDFFTFNILINCFSQLGLN 121

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             +  V+  I K         +   I      G    A + +D +  +G   D+V    L
Sbjct: 122 SLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTL 181

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I+     G++ AA ++L+    + +    + Y+ ++     AK    A +LY  M + ++
Sbjct: 182 INGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRI 241

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P   T N+LI   C   QL + + +L  M    + P   T+SIL+ A  ++  V+   M
Sbjct: 242 SPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKM 301

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMC 411
           +L    +  +I ++V +  ++ G C
Sbjct: 302 MLGVTMKKDIILDVVTYNSLMDGYC 326


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/455 (22%), Positives = 192/455 (42%), Gaps = 27/455 (5%)

Query: 22  AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A  V    ++Y  ++R    +GRI++ + +L++M R+G   +  +YH      C+     
Sbjct: 115 AVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEAACRG-GGF 173

Query: 78  KEAFRFFKLVPNP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
           + A R  + +        +   N++++        + A  +LR +   G + D   Y  +
Sbjct: 174 RSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAV 233

Query: 134 I---TTCAKSGKVDAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           +       + G V  + E +      P+ V FN LI+   ++G  +R  +VLA+M    H
Sbjct: 234 LKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVE--H 291

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
              PD      ++      G ++ A E+   +  Y +K     Y   +        WE  
Sbjct: 292 GCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEET 351

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             +  +M  K    D+V  + L+DF    G V+   E+L++   +G    +I+Y++++  
Sbjct: 352 EELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVING 411

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP- 364
                   +A+ L + M +   KP   +   ++  LC  ++     +++S M   G CP 
Sbjct: 412 FCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQG-CPL 470

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTL 421
           N IT++ L+    +K  VE  + LL Q   +G  P+L+ +  +I   G   +  E    L
Sbjct: 471 NPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELL 530

Query: 422 NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI 456
           N  V   N G       ++S+A  + RE  +   I
Sbjct: 531 NVMV---NKGMSPNTIIYSSIASALSREGRINKVI 562



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 166/433 (38%), Gaps = 83/433 (19%)

Query: 22  AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKE 79
           A DV       N +  QG + E + LL D+   G       Y+A    +C +++   ++E
Sbjct: 189 ALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQE 248

Query: 80  AFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
                 ++   P + TFN L+S    +   E   +VL  + E G   D ++Y T+I    
Sbjct: 249 LMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGIC 308

Query: 139 KSGKVDA------------------------------------------MFENVKP-DRV 155
           K G ++                                           MF+   P D V
Sbjct: 309 KEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDV 368

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
            FN L+    Q+G VDR  ++L +M        PD IT   ++      G +D A  + K
Sbjct: 369 TFNILVDFFCQNGLVDRVIELLEQMLE--RGCMPDVITYTTVINGFCKEGLIDEAVMLLK 426

Query: 216 MIHKYNIKGTPEVYTIA-----------------------------------INCCSQTG 240
            +     K     YTI                                    IN   + G
Sbjct: 427 SMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKG 486

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
             E A  +   M   G  PD +  S +ID  G AGK + A E+L    N+G+S   I YS
Sbjct: 487 LVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYS 546

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           S+  A S      K ++++++++   ++      NA+I++LC   +  + +E L+ M S 
Sbjct: 547 SIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSS 606

Query: 361 GLCPNTITYSILL 373
           G  PN  TY+IL+
Sbjct: 607 GCVPNESTYTILI 619



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 125/267 (46%), Gaps = 7/267 (2%)

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +NA++    ++G ++ A  + A +     PV P+  T   +++A    G++  A  V   
Sbjct: 93  YNAMVAGYCRAGQLESARRLAAAV-----PVPPNAYTYFPVVRALCARGRIADALAVLDE 147

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           + +      P +Y + +    + G +  A  V +D+  +G   D    + +++     G 
Sbjct: 148 MPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGS 207

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           V+ A  +L++  + G    ++SY++++     AK W    EL E M  +   P + T N 
Sbjct: 208 VDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNT 267

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           LI+ LC      +  EVL+ M   G  P+   Y+ ++    ++  +EV   +L++    G
Sbjct: 268 LISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYG 327

Query: 397 VIPNLVMFKCII-GMCS-RRYEKARTL 421
           + PN+V +  ++ G+CS  R+E+   L
Sbjct: 328 LKPNVVCYNTLLKGLCSAERWEETEEL 354


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/393 (22%), Positives = 177/393 (45%), Gaps = 50/393 (12%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--KVDAM 146
           +P + T+N +++    ++  + A +VL  + ++G+  DC  Y +++     SG  K   +
Sbjct: 120 SPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV 179

Query: 147 F------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           F      + V+PD V +N+L+    ++G    A  +   M      + P+  T G L++ 
Sbjct: 180 FLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTK--RGLKPEITTYGTLLQG 237

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
            A  G +     +  ++ +  I     V++I +   ++    E A  V+  M ++G+ P+
Sbjct: 238 YATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPN 297

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL-- 318
            V   A+I     +G+VE A    ++  ++G+S G I Y+SL+        W++A EL  
Sbjct: 298 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELIL 357

Query: 319 ---------------------------------YEHMKSIKLKPTVSTMNALITALCDGD 345
                                            ++ M  I +KP + T + LI   C   
Sbjct: 358 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG 417

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           ++ +  ++L+ M S+G+ P+ +TYS L+    +   ++  L+L  + +  GV P+++ + 
Sbjct: 418 KMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYN 477

Query: 406 CIIG--MCSRRYEKARTLNEHVLSFNSGRPQIE 436
            I+     +RR   A+ L  +V    SGR Q+E
Sbjct: 478 IILQGLFQTRRTAAAKEL--YVGITKSGR-QLE 507



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 178/413 (43%), Gaps = 33/413 (7%)

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           D +     PD   +N L+           A ++L  M  +     PD ++   ++     
Sbjct: 41  DELLRRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFK 100

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYT----IAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            G +D+    Y  +    I  +P V T    IA  C +QT D   A  V   M K GV+P
Sbjct: 101 EGDLDKTYSTYNEMLDQRI--SPNVVTYNSIIAALCKAQTVDK--AMEVLTTMVKSGVMP 156

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D +  ++++     +G+ + A   L++ ++ G+   +++Y+SLM          +A +++
Sbjct: 157 DCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIF 216

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M    LKP ++T   L+        L +   +L  M   G+ PN   +SIL+ A  ++
Sbjct: 217 DSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQ 276

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNEHVLSFNSGRPQIE- 436
           + VE  +++ S+ ++ G+ PN V +  +IG +C S R E A    E ++        I  
Sbjct: 277 EKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVY 336

Query: 437 ----------NKW---TSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE 483
                     NKW     L L +    I   TI    ++       ++  +  + + +V 
Sbjct: 337 NSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVR 396

Query: 484 NLGVSADALKRSNLCSLIDGF---GEYDPRAFSLLEEAASFGIVP-CVSFKEI 532
            +GV  D +  S   +LIDG+   G+ D  A  LL    S G+ P CV++  +
Sbjct: 397 -IGVKPDIITYS---TLIDGYCLAGKMD-EATKLLASMVSVGMKPDCVTYSTL 444



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 171/401 (42%), Gaps = 56/401 (13%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN +I    +   + + +++L  M + G++     Y++     C S +  KEA
Sbjct: 119 ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQP-KEA 177

Query: 81  FRFFKLVPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
             F K + +    P + T+N LM  +C + + +E A ++   + + GLK +   Y TL+ 
Sbjct: 178 IVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTE-ARKIFDSMTKRGLKPEITTYGTLLQ 236

Query: 136 TCAKSGKV-------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
             A  G +       D M  N + P+  VF+ L+ A  +   V+ A  V ++M  +   +
Sbjct: 237 GYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQ--GL 294

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA-- 245
           +P+ +T GA++     +G+V+ A   ++ +    +     VY   I+       WE A  
Sbjct: 295 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEE 354

Query: 246 ------------------------CS---------VYDDMTKKGVIPDEVFLSALIDFAG 272
                                   C          ++D M + GV PD +  S LID   
Sbjct: 355 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 414

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
            AGK++ A ++L    + G+    ++YS+L+         + AL L+  M+S  + P + 
Sbjct: 415 LAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDII 474

Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           T N ++  L    +     E+   +   G      TY+I+L
Sbjct: 475 TYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIIL 515



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/391 (20%), Positives = 167/391 (42%), Gaps = 19/391 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    + GR +E   + + M ++GL      Y         ++ A+ E      L
Sbjct: 195 TYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTY-GTLLQGYATKGALVEMHGLLDL 253

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     +P    F++L+   A  +  E A  V   +++ GL  +   Y  +I    KSG+
Sbjct: 254 MVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 313

Query: 143 V-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           V DAM        E + P  +V+N+LI         +RA +++ EM      +  + I  
Sbjct: 314 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD--RGICLNTIFF 371

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +++ +    G+V  + +++ ++ +  +K     Y+  I+     G  + A  +   M  
Sbjct: 372 NSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS 431

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G+ PD V  S LI+      +++ A  + +E ++ G+S  II+Y+ ++      +    
Sbjct: 432 VGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAA 491

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A ELY  +     +  +ST N ++  LC        + +  ++  + L     T++I++ 
Sbjct: 492 AKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMID 551

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           A  +    +    L      +G++PN   ++
Sbjct: 552 ALLKVGRNDEAKDLFVAFSSNGLVPNYWTYR 582


>gi|242038895|ref|XP_002466842.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
 gi|241920696|gb|EER93840.1| hypothetical protein SORBIDRAFT_01g015050 [Sorghum bicolor]
          Length = 1090

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 151/341 (44%), Gaps = 13/341 (3%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
            P  +++N+LM           +  + + +   G++ D   Y  LI   ++ G +D     
Sbjct: 713  PNSASYNILMHGYVKRGQFSKSLYLYKYMVRKGIRPDNVTYRLLILGLSECGLIDIAVKF 772

Query: 145  ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                + E + PD++VF+ LIT+  +   +  A  +   M   +H + P   T  A++   
Sbjct: 773  LEKMVLEGIFPDKLVFDILITSFSEKSKMHNALRLFNCMKC-LH-LSPSSKTFSAMINGL 830

Query: 202  ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                 +D++ EV   + +  ++     Y   +N   + G+ + A  + ++M   G++P E
Sbjct: 831  IRKNYLDQSHEVLHEMLQVGLQPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAE 890

Query: 262  VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
            V  S++I      GK+E A  +       G+   + ++++LM +         AL L   
Sbjct: 891  VAESSIIRGLCRCGKLEEAVIVFSNMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRL 950

Query: 322  MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
            M+  +LK  V + N LIT LC    +   +++  +MKS GL PN  TY  L  A      
Sbjct: 951  MELCRLKVDVVSYNVLITGLCKDKHISDALDLYGEMKSKGLWPNVTTYITLTGAMYSTGR 1010

Query: 382  VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
            ++ G  LL   +E G+IP    FK +  +  R  +  R LN
Sbjct: 1011 MQNGEELLEDIEERGLIP---AFKQLENLERRMEDAIRRLN 1048



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 109/447 (24%), Positives = 190/447 (42%), Gaps = 28/447 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           S+N +I     +G+I E   + +DM R G       Y      +C+    ++     F L
Sbjct: 506 SFNCIIDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLLRGLCQGGHLVQAKQFMFCL 565

Query: 87  VPNPTL---STFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +  P+     TFN +L+ +C      E      ++V+   L  D   YT L++   + GK
Sbjct: 566 LDIPSAVDEKTFNALLLGICKYGTLDEALDICEKMVKNNCL-PDIHTYTILLSGFCRKGK 624

Query: 143 V-------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +         M E  V PD V +  L+      G V  A  V  E+  +   +  D I  
Sbjct: 625 ILPALVMLQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYVFQEIICK-EGLYADCIAY 683

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +LM      G V+  + +   +++  +      Y I ++   + G +  +  +Y  M +
Sbjct: 684 NSLMNGYLKGGNVNTIKRMMSDMYQNEVYPNSASYNILMHGYVKRGQFSKSLYLYKYMVR 743

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           KG+ PD V    LI      G ++ A + L++   +GI    + +  L+ + S       
Sbjct: 744 KGIRPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDKLVFDILITSFSEKSKMHN 803

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           AL L+  MK + L P+  T +A+I  L   + L ++ EVL +M  +GL PN   Y  L+ 
Sbjct: 804 ALRLFNCMKCLHLSPSSKTFSAMINGLIRKNYLDQSHEVLHEMLQVGLQPNHTHYIALVN 863

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFN---- 429
           A  R  +++    L  + K  G++P  V    II G+C     +   L E V+ F+    
Sbjct: 864 AKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLC-----RCGKLEEAVIVFSNMMR 918

Query: 430 SGRPQIENKWTSLALMVYREAIVAGTI 456
           SG       +T+L   + +E+ +A  +
Sbjct: 919 SGMVPTVATFTTLMHSLCKESKIADAL 945



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/353 (22%), Positives = 160/353 (45%), Gaps = 17/353 (4%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF---- 147
           ++T N+L++   ++ +   A  +L+ ++   L ++   Y T++    K G+  A      
Sbjct: 155 VTTCNILLNSLCTNGEFRKAEDMLQKMKSCCL-SNSATYNTILHWYVKKGRFKAALCVLE 213

Query: 148 ----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
               ++++ D   +N +I    +     RAF +L  M  +   + PD  T   L+     
Sbjct: 214 DMERDSIQADIYTYNIMIDKLCRIKRSARAFLLLKRMRKD--DLTPDECTYNTLINGFFG 271

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G+++ AR V+  + +  +  +   YT  I+   +    + A SV  +M   GV+P E+ 
Sbjct: 272 EGKINHARCVFNHMLRQTLVPSVATYTTMIDGYCRNRRIDKALSVLSEMEITGVMPSELT 331

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            SAL++       +  A +++ + K++GI++     + L+          KA ++ + M 
Sbjct: 332 YSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMCTILIDGFCQVGEISKAKQILKSML 391

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              + P V T +ALI  +C   ++ +T E+LS M+  G+ PN + Y+ L+    +   V+
Sbjct: 392 EDGIDPDVVTYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVK 451

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII------GMCSRRYEKARTLNEHVLSFNS 430
           V L         G++ N V+   ++      GM +      + ++   +SFNS
Sbjct: 452 VALKHFVDIYRRGLVANPVIHNALLRAFYREGMITEAEHFRQYMSRMNISFNS 504



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 98/462 (21%), Positives = 175/462 (37%), Gaps = 88/462 (19%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           LH Y   +++GR    + +LEDMER  +      Y+     +C+ +++ + AF   K + 
Sbjct: 196 LHWY---VKKGRFKAALCVLEDMERDSIQADIYTYNIMIDKLCRIKRSAR-AFLLLKRMR 251

Query: 89  NPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
              L+    T+N L++          A  V   +    L      YTT+I    ++ ++D
Sbjct: 252 KDDLTPDECTYNTLINGFFGEGKINHARCVFNHMLRQTLVPSVATYTTMIDGYCRNRRID 311

Query: 145 AMFE--------NVKPDRVVFNALI----------------------------TACG--- 165
                        V P  + ++AL+                            T C    
Sbjct: 312 KALSVLSEMEITGVMPSELTYSALLNGYCKVSMLGPALDLMVDLKSRGITINKTMCTILI 371

Query: 166 ----QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
               Q G + +A  +L  M  +   +DPD +T  AL+       ++   +E+   + K  
Sbjct: 372 DGFCQVGEISKAKQILKSMLED--GIDPDVVTYSALINGMCRMAKMHETKEILSRMQKSG 429

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
           I     +YT  I    + G  + A   + D+ ++G++ + V  +AL+      G +  A 
Sbjct: 430 ILPNDVLYTTLICYYCKAGYVKVALKHFVDIYRRGLVANPVIHNALLRAFYREGMITEAE 489

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
              Q      IS   +S++ ++ +  +     +A  +Y+ M      P V T   L+  L
Sbjct: 490 HFRQYMSRMNISFNSVSFNCIIDSYCHRGKIVEAFSVYDDMVRYGHSPNVCTYQNLLRGL 549

Query: 342 CDGDQLPKT---MEVLSDMKS-----------LGLC---------------------PNT 366
           C G  L +    M  L D+ S           LG+C                     P+ 
Sbjct: 550 CQGGHLVQAKQFMFCLLDIPSAVDEKTFNALLLGICKYGTLDEALDICEKMVKNNCLPDI 609

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            TY+ILL    RK  +   L++L    E GV+P+ V + C++
Sbjct: 610 HTYTILLSGFCRKGKILPALVMLQMMLEKGVVPDTVAYTCLL 651


>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
 gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 855

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 139/314 (44%), Gaps = 46/314 (14%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKS---GKVDAMFENV-----KPDRVVFNALITACGQSG 168
           L ++ G K D   YTT++    ++   G+++ + + +     KP+ V +N LI + G++ 
Sbjct: 349 LKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRAN 408

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +  A +V  +M       +PD +T   L+   A AG +D A ++Y+ + +  +      
Sbjct: 409 YLKEAMNVFNQMQEA--GCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFT 466

Query: 229 YTIAINCCSQTG-----------------------------------DWEFACSVYDDMT 253
           Y++ INC  + G                                   ++E A  +Y DM 
Sbjct: 467 YSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQ 526

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
             G  PD+V  S +++  GH G +E A  +  E + +        Y  L+     A N  
Sbjct: 527 NAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGNVD 586

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA + Y+ M    L+P V T N+L++      ++ +   +L  M +LGL P+  TY++LL
Sbjct: 587 KAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLL 646

Query: 374 VAC-ERKDDVEVGL 386
             C + + + ++G 
Sbjct: 647 SCCTDARSNFDMGF 660



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 135/322 (41%), Gaps = 17/322 (5%)

Query: 3   DGGKNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKV 62
           D   N L F Y   +   + HD          L R  +  E   LL++M R G    + V
Sbjct: 337 DNYANALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGC-KPNTV 395

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            + R  +       +KEA   F  +      P   T+  L+ + A +   + A  + + +
Sbjct: 396 TYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRM 455

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAV 170
           QEAGL  D   Y+ +I    K+G + A          +   P+ V FN +I    ++   
Sbjct: 456 QEAGLSPDTFTYSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNY 515

Query: 171 DRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           + A  +  +M NA   P   D +T   +M+   + G ++ A  V+  + + N      VY
Sbjct: 516 ETALKLYRDMQNAGFQP---DKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEPVY 572

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
            + ++   + G+ + A   Y  M + G+ P+    ++L+       ++  A+ +LQ    
Sbjct: 573 GLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLA 632

Query: 290 QGISVGIISYSSLMGACSNAKN 311
            G+   + +Y+ L+  C++A++
Sbjct: 633 LGLHPSLQTYTLLLSCCTDARS 654



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 83/201 (41%), Gaps = 3/201 (1%)

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           Y +  +   K     YT  +    +   +     + D+M + G  P+ V  + LI   G 
Sbjct: 347 YWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGR 406

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           A  ++ A  +  + +  G     ++Y +L+   + A     A+++Y+ M+   L P   T
Sbjct: 407 ANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFT 466

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            + +I  L     LP    +  +M   G  PN +T++I++    +  + E  L L    +
Sbjct: 467 YSVIINCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQ 526

Query: 394 EDGVIPNLVMFKC---IIGMC 411
             G  P+ V +     ++G C
Sbjct: 527 NAGFQPDKVTYSIVMEVLGHC 547



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/217 (22%), Positives = 85/217 (39%), Gaps = 26/217 (11%)

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + G   D    + ++   G A +     ++L E    G     ++Y+ L+ +   A   +
Sbjct: 352 QPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLK 411

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A+ ++  M+    +P   T   LI        L   M++   M+  GL P+T TYS+++
Sbjct: 412 EAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVII 471

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRP 433
               +   +     L  +    G  PNLV F  +I +    + KAR              
Sbjct: 472 NCLGKAGHLPAAHRLFCEMVGQGCTPNLVTFNIMIAL----HAKARNY------------ 515

Query: 434 QIENKWTSLALMVYREAIVAGTIP---TVEVVSKVLG 467
                    AL +YR+   AG  P   T  +V +VLG
Sbjct: 516 -------ETALKLYRDMQNAGFQPDKVTYSIVMEVLG 545


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 166/382 (43%), Gaps = 24/382 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L++  R    I L +  E  G+   D    +   N    Q  I  AF  F    K   +P
Sbjct: 68  LVKNKRYPTVISLFKQFEPNGITP-DLCTLSILINCFCHQAHITLAFSVFANILKRGFHP 126

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
              T N L+       + +        V   G + D   Y TLI    K+G+  A+    
Sbjct: 127 DAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLL 186

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                 +VKPD V++N +I +  ++  +  A DV +EM   V  + PD +T   L+    
Sbjct: 187 RKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEM--IVKGISPDVVTYTTLIHGFC 244

Query: 203 NAGQVDRAREVYKMIHKYNIKG-TPEVYTIA--INCCSQTGDWEF---ACSVYDDMTKKG 256
             G++   +E + ++++  +K   P+VYT +  I+   + G  +    A S++++M  K 
Sbjct: 245 IMGKM---KEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKN 301

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           +IPD V  ++LID       +E A  +L+E K  GI   + SY+ L+         + A 
Sbjct: 302 MIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAK 361

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           E ++H+        V   N +I  LC      + M++ S M+  G  PN IT+  ++ A 
Sbjct: 362 EFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICAL 421

Query: 377 ERKDDVEVGLMLLSQAKEDGVI 398
             KD+ +    +L +    G++
Sbjct: 422 SEKDENDKAEKILREMIARGLL 443



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 126/283 (44%), Gaps = 9/283 (3%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           + PD    + LI        +  AF V A  N       PD IT+  L+K     G++ +
Sbjct: 89  ITPDLCTLSILINCFCHQAHITLAFSVFA--NILKRGFHPDAITLNTLIKGLCFRGEIKK 146

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
               +  +     +     Y   IN   + G+ +    +   +    V PD V  + +I+
Sbjct: 147 TLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIIN 206

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLK 328
                  +  A ++  E   +GIS  +++Y++L+ G C   K  ++A  L   MK   + 
Sbjct: 207 SLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGK-MKEAFSLLNEMKLKNIN 265

Query: 329 PTVSTMNALITALC-DGDQ--LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           P V T + LI AL  +G +  + + M +  +MK   + P+ +TY+ L+    +   +E  
Sbjct: 266 PDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERA 325

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
           + LL + KE G+ P++  +  ++ G+C   R E A+   +H+L
Sbjct: 326 IALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKEFFQHLL 368



 Score = 40.0 bits (92), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 57/293 (19%), Positives = 110/293 (37%), Gaps = 65/293 (22%)

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
           +      + ++ +  GI+  + + S L+    +  +   A  ++ ++      P   T+N
Sbjct: 73  RYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLN 132

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI  LC   ++ KT+     + + G   + ++Y  L+    +  + +    LL + +  
Sbjct: 133 TLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGH 192

Query: 396 GVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAG 454
            V P++VM+  II  +C                        +NK    A  VY E IV G
Sbjct: 193 SVKPDVVMYNTIINSLC------------------------KNKLLGDACDVYSEMIVKG 228

Query: 455 TIPTVEVVSK------VLGCLQLPY-----------NADI--------------RERLVE 483
             P V   +       ++G ++  +           N D+              ++++V+
Sbjct: 229 ISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVD 288

Query: 484 NLGVSADALKRSNLC-------SLIDGF--GEYDPRAFSLLEEAASFGIVPCV 527
                 + +K  N+        SLIDG     +  RA +LL+E    GI P V
Sbjct: 289 EAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDV 341


>gi|15222997|ref|NP_172253.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180186|sp|Q9LQQ1.1|PPR20_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g07740, mitochondrial; Flags: Precursor
 gi|8439893|gb|AAF75079.1|AC007583_15 It contains PPR repeats PF|01535 [Arabidopsis thaliana]
 gi|14596021|gb|AAK68738.1| Unknown protein [Arabidopsis thaliana]
 gi|31376389|gb|AAP49521.1| At1g07730 [Arabidopsis thaliana]
 gi|51970836|dbj|BAD44110.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190050|gb|AEE28171.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 459

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 148/349 (42%), Gaps = 49/349 (14%)

Query: 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--------FENVKPDRVVF 157
           +D E A  +    QE G + D   Y++LI   AKS   DA+        + NV+    +F
Sbjct: 60  EDPEEALSLFHQYQEMGFRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLF 119

Query: 158 NALITACGQSGAVDRAFDVLAEMNAE--VHPVDPDHITIGALMKACANAGQVDRAREVYK 215
             LI   G++G+VD+A DV  ++ +   V  +     ++  L+    + G++++A+  + 
Sbjct: 120 MGLIQHYGKAGSVDKAIDVFHKITSFDCVRTIQ----SLNTLINVLVDNGELEKAKSFFD 175

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF----- 270
                 ++     + I I       DWE AC V+D+M +  V P  V  ++LI F     
Sbjct: 176 GAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRND 235

Query: 271 -AGHA-----------------------------GKVEAAFEILQEAKNQGISVGIISYS 300
             G A                             G+   A +++ + + +G   G+++Y 
Sbjct: 236 DMGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYG 295

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
            LM          +A  L   MK  ++KP V   N L+  LC   ++P+   VL++M+  
Sbjct: 296 ILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMK 355

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           G  PN  TY +++    R +D + GL +L+        P    F C++ 
Sbjct: 356 GCKPNAATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVA 404



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 103/225 (45%)

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           D+ +  +L+   A +   D   ++ +++   N++    ++   I    + G  + A  V+
Sbjct: 80  DYPSYSSLIYKLAKSRNFDAVDQILRLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVF 139

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
             +T    +     L+ LI+     G++E A      AK+  +    +S++ L+    + 
Sbjct: 140 HKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKGFLDK 199

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
            +W+ A ++++ M  ++++P+V T N+LI  LC  D + K   +L DM    + PN +T+
Sbjct: 200 CDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAVTF 259

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
            +L+     K +      L+   +  G  P LV +  ++    +R
Sbjct: 260 GLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKR 304



 Score = 40.8 bits (94), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 67/176 (38%), Gaps = 10/176 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--- 146
           P   TF +LM       +   A +++  ++  G K     Y  L++   K G++D     
Sbjct: 254 PNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLL 313

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   +KPD V++N L+        V  A+ VL EM  ++    P+  T   ++   
Sbjct: 314 LGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEM--QMKGCKPNAATYRMMIDGF 371

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
                 D    V   +       TP  +   +    + G+ + AC V + M KK +
Sbjct: 372 CRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAGLIKGGNLDHACFVLEVMGKKNL 427


>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
          Length = 977

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 136/303 (44%), Gaps = 45/303 (14%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKS---GKVDAMFENV-----KPDRVVFNALITACGQSG 168
           L ++ G K D   YTT++    ++   G ++ + + +     +P+ V +N LI + G++ 
Sbjct: 471 LKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRAN 530

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            ++ A +V  +M  +     PD +T   L+   A AG +D A ++Y+ +    +      
Sbjct: 531 YLNEAMNVFNQM--QEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFT 588

Query: 229 YTIAINCCSQTG-----------------------------------DWEFACSVYDDMT 253
           Y++ INC  + G                                   +++ A  +Y DM 
Sbjct: 589 YSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQ 648

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
             G  PD+V  S +++  GH G +E A  +  E + +        Y  L+     A N +
Sbjct: 649 NAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVE 708

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA + Y+ M    L+P V T N+L++     +++ +  E+L +M +LGL P+  TY++LL
Sbjct: 709 KAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLL 768

Query: 374 VAC 376
             C
Sbjct: 769 SCC 771



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 107/265 (40%), Gaps = 45/265 (16%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P   T+N L+     +     A  V   +QEAG K D   Y TLI   AK+G +D    M
Sbjct: 514 PNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDM 573

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           ++ ++     PD   ++ +I   G++G +  A  +  EM  +     P+ +T   +M   
Sbjct: 574 YQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQ--GCTPNLVTYNIMMDLH 631

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A A     A ++Y+ +     +     Y+I +      G  E A +V+ +M +K  IPDE
Sbjct: 632 AKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDE 691

Query: 262 VFLSALIDFAGHAGKVEAA-----------------------------------FEILQE 286
                L+D  G AG VE A                                   +E+LQ 
Sbjct: 692 PVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQN 751

Query: 287 AKNQGISVGIISYSSLMGACSNAKN 311
               G+   + +Y+ L+  C++ ++
Sbjct: 752 MLALGLRPSLQTYTLLLSCCTDGRS 776



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 84/201 (41%), Gaps = 3/201 (1%)

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           Y +  +   K     YT  +    +   +     + D+M + G  P+ V  + LI   G 
Sbjct: 469 YWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGR 528

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           A  +  A  +  + +  G     ++Y +L+   + A     A+++Y+ M++  L P   T
Sbjct: 529 ANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFT 588

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            + +I  L     LP   ++  +M   G  PN +TY+I++    +  + +  L L    +
Sbjct: 589 YSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQ 648

Query: 394 EDGVIPNLVMFKC---IIGMC 411
             G  P+ V +     ++G C
Sbjct: 649 NAGFEPDKVTYSIVMEVLGHC 669


>gi|168002263|ref|XP_001753833.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694809|gb|EDQ81155.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 779

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/424 (21%), Positives = 182/424 (42%), Gaps = 27/424 (6%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           Y++DV   +++   L  +G I++    +E    K  ++   +    F      QKA+   
Sbjct: 5   YSYDVENAINNLTSLAPRGSIAKT---MEGYRNKLTINDFSLIFREFAQRSDWQKAL--- 58

Query: 81  FRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            R FK +       P    + +++ +       + A ++   +    ++ +   +T LI 
Sbjct: 59  -RLFKYMQRHQWCKPNEHVYTIMIGIMGREGMLDKASELFEDMPLNDVEWNVYSFTALIN 117

Query: 136 TCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSG-AVDRAFDVLAEMNAEVHP 186
              ++G+ +A          E V P+ + +N +I AC + G   +    + A+M  E   
Sbjct: 118 AYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHE--G 175

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + PD IT   L+ AC++ G V+ A  V++ +++  +      Y   ++   Q    E   
Sbjct: 176 IQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVG 235

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +  +M + G  PD V  + LI+  G AGK  AA ++ ++ +  G +  ++++S+L+ A 
Sbjct: 236 ELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAY 295

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
                + +   L+  MK    +P V+T N LI     G    +++ +  D+   G+ P+ 
Sbjct: 296 GKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDM 355

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL 426
            TY+ LL +C +    +    +     +  V P    F  +I      Y  A   +E   
Sbjct: 356 STYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLI----TAYGNAALYSEATY 411

Query: 427 SFNS 430
           +FNS
Sbjct: 412 AFNS 415



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 168/404 (41%), Gaps = 18/404 (4%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           +DV   ++S+  LI    R G+    + LL  M+R+ +      Y+       K     +
Sbjct: 103 NDVEWNVYSFTALINAYGRNGQHEASLHLLARMKREKVTPNLITYNTVINACAKGGLEWE 162

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
                F  + +    P + T+N L+S C+S    E A  V R + EAG+  D   Y  L+
Sbjct: 163 GLLGLFAQMRHEGIQPDIITYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALV 222

Query: 135 TTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
               ++ + + + E ++        PD V +N LI A G++G    A  +  +M  +   
Sbjct: 223 DIYGQADRHEGVGELLREMEQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQM--QEAG 280

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             PD +T   L++A    G  D  R ++  + +   +     Y   I    Q G ++ + 
Sbjct: 281 CTPDVVTFSTLLEAYGKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESI 340

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           +++ D+   GV PD    + L+   G  G  +AA +I +      ++     ++ L+ A 
Sbjct: 341 NLFWDLLDGGVEPDMSTYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAY 400

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
            NA  + +A   +  MK    KP + T NALI A   G    +       M   G+  + 
Sbjct: 401 GNAALYSEATYAFNSMKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGISADV 460

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
            TY+ L+ A  R    +  +      +E    PN   ++ ++G+
Sbjct: 461 STYNSLIEAFGRGGLFDDAIEFSRDMEEARCSPNRHTYEALMGV 504



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 161/367 (43%), Gaps = 28/367 (7%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEA---- 80
           H Y  +I    R+G + +  +L EDM    L D++  VY          +    EA    
Sbjct: 75  HVYTIMIGIMGREGMLDKASELFEDMP---LNDVEWNVYSFTALINAYGRNGQHEASLHL 131

Query: 81  -FRFFKLVPNPTLSTFNMLMSVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
             R  +    P L T+N +++ CA    + EG   +   ++  G++ D   Y TL++ C+
Sbjct: 132 LARMKREKVTPNLITYNTVINACAKGGLEWEGLLGLFAQMRHEGIQPDIITYNTLLSACS 191

Query: 139 KSGKVD-------AMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
             G V+        M E  V PD + +NAL+   GQ+   +   ++L EM  E     PD
Sbjct: 192 SRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREM--EQAGNAPD 249

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSV 248
            +    L++A   AG+   A +++K + +     TP+V T +  +    + G ++    +
Sbjct: 250 VVAYNILIEAYGRAGKYRAAAKMFKQMQEAGC--TPDVVTFSTLLEAYGKHGCYDEVRLL 307

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           + DM ++G  PD    + LI   G  G  + +  +  +  + G+   + +Y+ L+ +C  
Sbjct: 308 FTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDMSTYAGLLYSCGK 367

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
               + A +++ HM    + PT      LITA  +     +     + MK  G  P+  T
Sbjct: 368 GGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKESGCKPDLET 427

Query: 369 YSILLVA 375
           Y+ L+ A
Sbjct: 428 YNALIGA 434



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/397 (22%), Positives = 166/397 (41%), Gaps = 27/397 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHA--RFFNVCKSQKAIKEAFRFF 84
           +YN L+     +G + E   +   M   G++     Y+A    +      + + E  R  
Sbjct: 182 TYNTLLSACSSRGLVEEAGMVFRTMNEAGVVPDSITYNALVDIYGQADRHEGVGELLREM 241

Query: 85  KLVPN-PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-- 141
           +   N P +  +N+L+     +     A ++ + +QEAG   D   ++TL+    K G  
Sbjct: 242 EQAGNAPDVVAYNILIEAYGRAGKYRAAAKMFKQMQEAGCTPDVVTFSTLLEAYGKHGCY 301

Query: 142 -KVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            +V  +F ++K     PD   +N LI   GQ G    + ++  ++      V+PD  T  
Sbjct: 302 DEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLD--GGVEPDMSTYA 359

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            L+ +C   G    A+++++ + +  +  T + +T  I        +  A   ++ M + 
Sbjct: 360 GLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNSMKES 419

Query: 256 GVIPDEVFLSALIDFAGHAGK---VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
           G  PD    +ALI    HAG     EA    L    ++GIS  + +Y+SL+ A      +
Sbjct: 420 GCKPDLETYNALI--GAHAGGGLYCEAGSAYLTMI-DEGISADVSTYNSLIEAFGRGGLF 476

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
             A+E    M+  +  P   T  AL+   C      +      D++  G  P+  +Y +L
Sbjct: 477 DDAIEFSRDMEEARCSPNRHTYEALMGVYCTAGLFDEAKAQFLDLQVGGELPSVDSYCLL 536

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           L  C R++  +    +L +  E    PN+     ++G
Sbjct: 537 LSVCARRNRWDDASKVLEEMLE----PNMPSIYGVVG 569



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 83/388 (21%), Positives = 145/388 (37%), Gaps = 62/388 (15%)

Query: 16  GKHANYAH------DVSEQ-----LHSYNRLIR----QGRISECIDLLEDMERKGLLDMD 60
           GKH  Y        D+ E+     +++YN LI+     G   E I+L  D+   G+    
Sbjct: 296 GKHGCYDEVRLLFTDMKERGTEPDVNTYNTLIQVFGQGGFFQESINLFWDLLDGGVEPDM 355

Query: 61  KVYHARFFNVCKS--QKAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
             Y    ++  K    KA K+  R   +    PT   F  L++   ++     A      
Sbjct: 356 STYAGLLYSCGKGGLHKAAKKIHRHMLQSYVTPTTDGFTGLITAYGNAALYSEATYAFNS 415

Query: 118 VQEAGLKADCKLYTTLITTCAKSG--------KVDAMFENVKPDRVVFNALITACGQSGA 169
           ++E+G K D + Y  LI   A  G         +  + E +  D   +N+LI A G+ G 
Sbjct: 416 MKESGCKPDLETYNALIGAHAGGGLYCEAGSAYLTMIDEGISADVSTYNSLIEAFGRGGL 475

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
            D A +   +M  E     P+  T  ALM     AG  D A+  +  +       + + Y
Sbjct: 476 FDDAIEFSRDM--EEARCSPNRHTYEALMGVYCTAGLFDEAKAQFLDLQVGGELPSVDSY 533

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
            + ++ C++   W+ A  V ++M +  +                                
Sbjct: 534 CLLLSVCARRNRWDDASKVLEEMLEPNM-----------------------------PSI 564

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
            G+  GI     L G   +  NWQ+    ++ +K   +   +   NAL+ AL    Q  +
Sbjct: 565 YGVVGGI-----LKGEMDDGTNWQRVEYAFDGLKVDGVGSNLRFYNALLEALWCLGQRER 619

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACE 377
              V ++ +  G+     + S L+ A +
Sbjct: 620 ACRVFAEARKRGVLAEAFSRSDLMWAID 647


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/421 (22%), Positives = 183/421 (43%), Gaps = 33/421 (7%)

Query: 11  FPYPNGKHANYAHDVSE--QLHSYNRLIRQGRISEC-------IDLLEDMERKGLLDMDK 61
           F + N  +A     ++     H+ +R++ Q     C       ++L++   +  L   +K
Sbjct: 122 FQHNNATYATILDKLARCNNFHAVDRVLHQMTYETCKFHEGIFVNLMKHFSKSSL--HEK 179

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121
           + HA F      Q  ++E     K  P    +  N+L+    S++       +L   ++ 
Sbjct: 180 LLHAYF----SIQPIVRE-----KPSPKALSTCLNLLLD---SNRVDLARKLLLHAKRDL 227

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFENVK---------PDRVVFNALITACGQSGAVDR 172
             K +  ++  L+    K+G +D+ FE V+         P+ V ++ L+    ++G V  
Sbjct: 228 TRKPNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKE 287

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
           AFD+  EM +  H V PD +T   L+      G+ DRAR V + +           Y+  
Sbjct: 288 AFDLFEEMVSRDHIV-PDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSAL 346

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           ++   + G  E A  V  ++   G+ PD V  ++LI+F    GK + A E+L+E K  G 
Sbjct: 347 VDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGC 406

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
               ++++ L+G       +++AL++ E +    +     +   ++ +L    +L +  E
Sbjct: 407 QADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKE 466

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           +L  M   G  P+  T + LLV   +   V+   + L    E G  P L  ++ +IG+  
Sbjct: 467 LLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQPGLETWEVLIGLIC 526

Query: 413 R 413
           R
Sbjct: 527 R 527



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 155/372 (41%), Gaps = 64/372 (17%)

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
           +D+V H   +  CK  + I     F  L+ + + S+ +         K     F +  +V
Sbjct: 145 VDRVLHQMTYETCKFHEGI-----FVNLMKHFSKSSLH--------EKLLHAYFSIQPIV 191

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFE---------NVKPDRVVFNALITACGQSGA 169
           +E   K   K  +T +     S +VD   +           KP+  VFN L+    ++G 
Sbjct: 192 RE---KPSPKALSTCLNLLLDSNRVDLARKLLLHAKRDLTRKPNVCVFNILVKYHCKNGD 248

Query: 170 VDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPE 227
           +D AF+++ EM N+E     P+ +T   LM      G+V  A ++++ M+ + +I   P 
Sbjct: 249 LDSAFEIVEEMRNSEFSY--PNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPL 306

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y + IN   + G  + A +V   M   G  P+    SAL+D     GK+E A  +L E 
Sbjct: 307 TYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEI 366

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           K  G                                   LKP   T  +LI  LC   + 
Sbjct: 367 KGSG-----------------------------------LKPDAVTYTSLINFLCRNGKS 391

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            + +E+L +MK  G   +++T+++LL    R+   E  L ++ +  + GV  N   ++ +
Sbjct: 392 DEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIV 451

Query: 408 IGMCSRRYEKAR 419
           +   +++ E  R
Sbjct: 452 LNSLTQKCELKR 463


>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
          Length = 784

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 180/443 (40%), Gaps = 54/443 (12%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V+   ++YN LI    R+    E   + ++M+  G  + DKV      +V    +   
Sbjct: 237 HGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGF-EPDKVTFNSLLDVYGKARRHD 295

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA    + +      P++ T+N L+S        E A  + + ++  G+K D   YTTLI
Sbjct: 296 EAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLI 355

Query: 135 TTCAKSGKVDA-------MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
           +   ++GK+DA       M  N  KP+   +NALI   G  G       V  E+ +    
Sbjct: 356 SGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSA--G 413

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             PD +T   L+      G       V+K + K       + Y   I+  S+ G ++ A 
Sbjct: 414 FVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAM 473

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +Y  M + G+ PD    +A++      G+ E A ++  E + +       SYSSL+ A 
Sbjct: 474 QIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAY 533

Query: 307 SNAKNWQKALELYEHMKSIKLKP-----------------------------------TV 331
           +NAK   K   L + + S +++P                                    +
Sbjct: 534 ANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDI 593

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
           + +NA+++       + K  ++LS MK   +  +  TY+ L+    R  D E    +L++
Sbjct: 594 NVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTE 653

Query: 392 AKEDGVIPNLVMFKCIIGMCSRR 414
            K  GV P+   +  +I    R+
Sbjct: 654 IKSSGVRPDRYSYNTVIYAYGRK 676



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 150/356 (42%), Gaps = 13/356 (3%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           + EA       P P    +  L+S  + +     A  V R + ++G++     Y  ++  
Sbjct: 157 LAEASALLDAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHV 216

Query: 137 CAKSGK--------VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
            +K           V +M E+ V PDR  +N LI+ C +      A  V  EM A     
Sbjct: 217 YSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKAS--GF 274

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           +PD +T  +L+     A + D A EV + + +     +   Y   I+   + G  E A +
Sbjct: 275 EPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVA 334

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +  +M  KG+ PD V  + LI     AGK++AA     E    G    + +Y++L+    
Sbjct: 335 LKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHG 394

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
               + + + +++ ++S    P + T N L+          +   V  +MK  G  P   
Sbjct: 395 VRGKFPEMMAVFDELRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERD 454

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 421
           TY  L+ +  R    ++ + +  +  E G+ P++  +  ++   +R  R+E+A  L
Sbjct: 455 TYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKL 510



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 150/351 (42%), Gaps = 14/351 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R GR  + + +   M   G+      Y+       K     KE       +      P  
Sbjct: 184 RAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDR 243

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK- 151
            T+N L+S C      + A QV   ++ +G + D   + +L+    K+ + D   E ++ 
Sbjct: 244 YTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQE 303

Query: 152 -------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                  P  V +N+LI++  + G +++A  +  EM  EV  + PD +T   L+     A
Sbjct: 304 MERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEM--EVKGIKPDVVTYTTLISGLDRA 361

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G++D A   Y  + +   K     Y   I      G +    +V+D++   G +PD V  
Sbjct: 362 GKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTW 421

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + L+   G  G       + +E K  G      +Y SL+ + S    +  A+++Y+ M  
Sbjct: 422 NTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMME 481

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             + P VST NA+++AL  G +  +  ++ ++M+     P+  +YS LL A
Sbjct: 482 AGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHA 532



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 171/396 (43%), Gaps = 28/396 (7%)

Query: 35  LIRQGRISECIDLLEDMERKG----------LLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L R G+I   I   ++M R G          L+ M  V   +F        A+ +  R  
Sbjct: 358 LDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGV-RGKF----PEMMAVFDELRSA 412

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
             VP+  + T+N L++V   +        V + +++AG   +   Y +LI++ ++ G  D
Sbjct: 413 GFVPD--IVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFD 470

Query: 145 --------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                    M   + PD   +NA+++A  + G  ++A  + AEM  E     PD  +  +
Sbjct: 471 LAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEM--EERDCKPDEYSYSS 528

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ A ANA ++D+ + +   I+   I+    +    +   S+  +   A   + ++ +K 
Sbjct: 529 LLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKR 588

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
              D   L+A++   G    V    +IL   K   I++   +Y+SLM   S   + +K  
Sbjct: 589 CSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCE 648

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            +   +KS  ++P   + N +I A     Q+ +   + S+MK  GL P+ +TY+I + + 
Sbjct: 649 NILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSY 708

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
                 E  + L+      G  PN   +  I+ G C
Sbjct: 709 VSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYC 744



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/279 (19%), Positives = 122/279 (43%), Gaps = 10/279 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--- 146
           P +ST+N ++S  A     E A ++   ++E   K D   Y++L+   A + ++D M   
Sbjct: 486 PDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKAL 545

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E ++P   +   L+    +   +  A     E+  +   +D +   + A++   
Sbjct: 546 SDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDIN--VLNAMVSIY 603

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                V +  ++  ++ +  I  +   Y   ++  S+ GD E   ++  ++   GV PD 
Sbjct: 604 GKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDR 663

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + +I   G  G+++ A  +  E K  G+   +++Y+  + +  +   +++A+EL  +
Sbjct: 664 YSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRY 723

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           M +   KP   T N+++   C   +L      +S++  L
Sbjct: 724 MVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLPQL 762


>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
 gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
 gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 135/303 (44%), Gaps = 45/303 (14%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKS---GKVDAMFENV-----KPDRVVFNALITACGQSG 168
           L ++ G K D   YTT++    ++   G ++ + + +     +P+ V +N LI + G++ 
Sbjct: 354 LKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRAN 413

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            ++ A +V  +M        PD +T   L+   A AG +D A ++Y+ +    +      
Sbjct: 414 YLNEAMNVFNQMQEA--GCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFT 471

Query: 229 YTIAINCCSQTG-----------------------------------DWEFACSVYDDMT 253
           Y++ INC  + G                                   +++ A  +Y DM 
Sbjct: 472 YSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQ 531

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
             G  PD+V  S +++  GH G +E A  +  E + +        Y  L+     A N +
Sbjct: 532 NAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVE 591

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA + Y+ M    L+P V T N+L++     +++ +  E+L +M +LGL P+  TY++LL
Sbjct: 592 KAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLL 651

Query: 374 VAC 376
             C
Sbjct: 652 SCC 654



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 107/265 (40%), Gaps = 45/265 (16%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P   T+N L+     +     A  V   +QEAG K D   Y TLI   AK+G +D    M
Sbjct: 397 PNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDM 456

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           ++ ++     PD   ++ +I   G++G +  A  +  EM  +     P+ +T   +M   
Sbjct: 457 YQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQ--GCTPNLVTYNIMMDLH 514

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A A     A ++Y+ +     +     Y+I +      G  E A +V+ +M +K  IPDE
Sbjct: 515 AKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDE 574

Query: 262 VFLSALIDFAGHAGKVEAA-----------------------------------FEILQE 286
                L+D  G AG VE A                                   +E+LQ 
Sbjct: 575 PVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQN 634

Query: 287 AKNQGISVGIISYSSLMGACSNAKN 311
               G+   + +Y+ L+  C++ ++
Sbjct: 635 MLALGLRPSLQTYTLLLSCCTDGRS 659



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 84/201 (41%), Gaps = 3/201 (1%)

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           Y +  +   K     YT  +    +   +     + D+M + G  P+ V  + LI   G 
Sbjct: 352 YWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGR 411

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           A  +  A  +  + +  G     ++Y +L+   + A     A+++Y+ M++  L P   T
Sbjct: 412 ANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFT 471

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            + +I  L     LP   ++  +M   G  PN +TY+I++    +  + +  L L    +
Sbjct: 472 YSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQ 531

Query: 394 EDGVIPNLVMFKC---IIGMC 411
             G  P+ V +     ++G C
Sbjct: 532 NAGFEPDKVTYSIVMEVLGHC 552


>gi|6723418|emb|CAB66911.1| putative protein [Arabidopsis thaliana]
          Length = 1184

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 142/296 (47%), Gaps = 14/296 (4%)

Query: 127 CKLYTTLITTCAKSGKVDAMFENVK---PDRV---VFNALITACGQSGAVDRAFDVLAEM 180
           CK    +++   + G V  + E ++   P+ +   +F  L+     +  V +A +VL EM
Sbjct: 134 CKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEM 193

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQ 238
               + ++PD    G L+ A    G V  A +V++ + +   K  P +  +T  +    +
Sbjct: 194 PK--YGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMRE---KFPPNLRYFTSLLYGWCR 248

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G    A  V   M + G+ PD V  + L+    HAGK+  A++++ + + +G    +  
Sbjct: 249 EGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNC 308

Query: 299 YSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           Y+ L+ A C   K   +A+ ++  M+    +  + T  ALI+  C    + K   VL DM
Sbjct: 309 YTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDM 368

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +  G+ P+ +TY  ++VA E+K+  E  L L+ + K  G  P+L+++  +I +  +
Sbjct: 369 RKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACK 424



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 148/331 (44%), Gaps = 24/331 (7%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLV---------PNPTL---STFNMLMSVCASSKDSEG 110
           +H+  + VCKS   I    R F  V          NP L     F +LM   AS+   + 
Sbjct: 128 FHS--YEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKK 185

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAMFENVKPDRVVFNALITA 163
           A +VL  + + GL+ D  ++  L+    K+G V       + M E   P+   F +L+  
Sbjct: 186 AVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYG 245

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
             + G +  A +VL +M      ++PD +    L+   A+AG++  A ++   + K   +
Sbjct: 246 WCREGKLMEAKEVLVQMKEA--GLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFE 303

Query: 224 GTPEVYTIAINC-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
                YT+ I   C      + A  V+ +M + G   D V  +ALI      G ++  + 
Sbjct: 304 PNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYS 363

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +L + + +G+    ++Y  +M A    + +++ LEL E MK     P +   N +I   C
Sbjct: 364 VLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLAC 423

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
              ++ + + + ++M++ GL P   T+ I++
Sbjct: 424 KLGEVKEAVRLWNEMEANGLSPGVDTFVIMI 454



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 153/360 (42%), Gaps = 40/360 (11%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-----KLVP 88
           R      + + +++L++M + GL   + V+      +CK+  ++KEA + F     K  P
Sbjct: 176 RFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKN-GSVKEASKVFEDMREKFPP 234

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           N    T ++L   C   K  E A +VL  ++EAGL+                        
Sbjct: 235 NLRYFT-SLLYGWCREGKLME-AKEVLVQMKEAGLE------------------------ 268

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQV 207
              PD VVF  L++    +G +  A+D++ +M       +P+      L++A C    ++
Sbjct: 269 ---PDIVVFTNLLSGYAHAGKMADAYDLMNDMRK--RGFEPNVNCYTVLIQALCRTEKRM 323

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A  V+  + +Y  +     YT  I+   + G  +   SV DDM KKGV+P +V    +
Sbjct: 324 DEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQI 383

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           +       + E   E++++ K +G    ++ Y+ ++         ++A+ L+  M++  L
Sbjct: 384 MVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGL 443

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL--CPNTITYSILLVACERKDDVEVG 385
            P V T   +I        L +      +M S G+   P   T   LL    R D +E+ 
Sbjct: 444 SPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMA 503


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 183/414 (44%), Gaps = 30/414 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L +QG   + + + ++M  +G++   K+Y     ++C + K I EA +    + +    P
Sbjct: 217 LCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGK-IDEAVQLLGSMKDKGCLP 275

Query: 91  TLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
              T+N  +S +C   + +E AFQ L ++Q+ G     K Y+ LI    ++ + D  F  
Sbjct: 276 DEVTYNAFLSGLCKVGRVNE-AFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGY 334

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  N+ PD V++  +I  C ++G ++ A   L  M  +     PD      ++K  
Sbjct: 335 YKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKK--GFVPDTFCYNTVLKVL 392

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            + G ++RA  +   + + N+       TI I    + G  + A  ++D+M + G  P  
Sbjct: 393 CDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTV 452

Query: 262 VFLSALIDFAGHAGKVEAA---FEILQEAKNQGI----SVG---IISYSSLMGACSNAKN 311
           +  +ALID     G++E A   F  ++   N  +    ++G   +    SL     +   
Sbjct: 453 MTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQ 512

Query: 312 WQKALELYEHMKSI---KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
             + L+ Y+ ++SI    + P V T N LI  LC    L   + +  +++  G+ P+ IT
Sbjct: 513 SGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEIT 572

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
           Y  L+    R       +ML     + G  P+L ++  ++    R  + ++ +N
Sbjct: 573 YGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAIN 626



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 132/320 (41%), Gaps = 13/320 (4%)

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAM--------FENVKPDR 154
           SS   E  F  L   + AGL A    +  L+   + +G+  DA+        F++ +P  
Sbjct: 114 SSHADEAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQS-RPTA 172

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
            V+N ++ A   SG +  A  +   M A      P+  T   LM      G    A +++
Sbjct: 173 FVYNTILKALVDSGVILLALALYNRMVAA--GCAPNRATYNVLMDGLCKQGMAGDALKMF 230

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             +    I    ++YT+ ++     G  + A  +   M  KG +PDEV  +A +      
Sbjct: 231 DEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKV 290

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G+V  AF+ L   ++ G ++G+  YS L+     A+ + +    Y+ M    + P V   
Sbjct: 291 GRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLY 350

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAK 393
             +I    +  ++   +  L  MK  G  P+T  Y ++L V C+  D      +     +
Sbjct: 351 TIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQ 410

Query: 394 EDGVIPNLVMFKCIIGMCSR 413
            + V+ +      I G+C R
Sbjct: 411 NNLVLDSTTQTIMICGLCKR 430



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 160/385 (41%), Gaps = 69/385 (17%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT--- 91
           L   G+I E + LL  M+ KG L  +  Y+A    +CK  + + EAF+   ++ +     
Sbjct: 252 LCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGR-VNEAFQRLVMLQDGGFAL 310

Query: 92  -LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM-FE 148
            L  ++ L+     ++  +  F   + + E  +  D  LYT +I  CA++G++ DA+ F 
Sbjct: 311 GLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFL 370

Query: 149 NVK------PDRVVFNAL---------------------------------ITACG--QS 167
           +V       PD   +N +                                 I  CG  + 
Sbjct: 371 DVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKR 430

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
           G VD A  +  EM    H  DP  +T  AL+      G+++ AR ++   HK  +   P 
Sbjct: 431 GLVDEAMQIFDEMGE--HGCDPTVMTYNALIDGFYREGRLEEARMLF---HKMEMGNNPS 485

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKG----------------VIPDEVFLSALIDFA 271
           ++       +Q  D E    +  DM + G                V+PD V  + LI+  
Sbjct: 486 LFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGL 545

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
             A  ++ A  + +E + +GIS   I+Y +L+     A     A+ L++++      P++
Sbjct: 546 CKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSL 605

Query: 332 STMNALITALCDGDQLPKTMEVLSD 356
           S  N+++ +LC   +L + + +  D
Sbjct: 606 SIYNSMMRSLCRMKKLSQAINLWLD 630



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/448 (21%), Positives = 175/448 (39%), Gaps = 34/448 (7%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           +   A++   R  +    PT   +N ++     S     A  +   +  AG   +   Y 
Sbjct: 152 RHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYN 211

Query: 132 TLITTCAKSGKV-DA--MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
            L+    K G   DA  MF+      + P+  ++  L+++   +G +D A  +L  M  +
Sbjct: 212 VLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDK 271

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
                PD +T  A +      G+V+ A +   M+         + Y+  I+   Q   ++
Sbjct: 272 --GCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFD 329

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
                Y  M ++ + PD V  + +I     AG++E A   L   K +G       Y++++
Sbjct: 330 EGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVL 389

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
               +  + ++A  L   M    L    +T   +I  LC    + + M++  +M   G  
Sbjct: 390 KVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCD 449

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 423
           P  +TY+ L+    R+  +E   ML  +  E G  P+L + +  +G              
Sbjct: 450 PTVMTYNALIDGFYREGRLEEARMLFHKM-EMGNNPSLFL-RLTLGA------------N 495

Query: 424 HVLSFNSGRPQIENKWTS----LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE 479
            V    S R  + +   S     A  + R  I +G +P V   + ++  L    N D   
Sbjct: 496 QVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAV 555

Query: 480 RLVENL---GVSADALKRSNLCSLIDGF 504
           RL + L   G+S D +      +LIDG 
Sbjct: 556 RLFKELQLKGISPDEITYG---TLIDGL 580


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 80/387 (20%), Positives = 183/387 (47%), Gaps = 14/387 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---- 90
           L R+G + +  +L+++M  KG++  +   +    N    +K  K      KL+       
Sbjct: 226 LCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVF 285

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--- 147
           +++T+++L+   +SS D E A ++   ++E  ++ D  +Y+++I+   + G +   F   
Sbjct: 286 SVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALF 345

Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                 ++ P+   + ALI    ++G ++ A  +L EM ++   VD + +     M    
Sbjct: 346 DEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSK--GVDLNLVIFNTTMDGYC 403

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G++D A  +  ++ K  I      Y I  N   +   ++ A  + + M +KGV P+ V
Sbjct: 404 RRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVV 463

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             +  I+     G +  A  + ++ + +G    II+Y++L+ A    +  ++A ++   M
Sbjct: 464 TFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEM 523

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            +  L P + T ++LI   C   ++ + +++ ++M+  G+  N  TY+ ++    ++   
Sbjct: 524 INKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRA 583

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           +    L  +  + G+IP+  +F  ++G
Sbjct: 584 DEAFKLYDEMMKIGLIPDDRVFTSLVG 610



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 130/582 (22%), Positives = 236/582 (40%), Gaps = 103/582 (17%)

Query: 41  ISECIDLLEDMER---KGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL----- 92
           +S  +DL+++ E    +   DM        F VC   +   E  R +  V    L     
Sbjct: 129 VSSIVDLVDEFESHFVEKFCDM-------LFRVCSDNRLFDETIRVYDYVEEKGLVIEER 181

Query: 93  STFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
           S F +L+++  C         F   R+V+    +   +  T +I    + G+V+   E  
Sbjct: 182 SCFVLLLALKRCGEVDFCVRFFH--RMVESNKFEIRVQSLTLVIDVLCRRGEVEKAKELM 239

Query: 149 -------NVKPDRVVFNALITACGQSGAVDR--AFDVLAEMNAEVHPVDPDHITIGALMK 199
                   VKP+   +N L+ A    G  DR    ++L  M  E   V     T   L++
Sbjct: 240 DEMVGKGIVKPNVFTYNTLLNA--YVGRKDRKGVDEILKLMEKE--QVVFSVATYSILIQ 295

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
             +++G ++ A ++++ + + NI+    VY+  I+   + G+ + A +++D+M+++ ++P
Sbjct: 296 WYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVP 355

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK-------- 310
           +     ALI     AG++EAA  +L E +++G+ + ++ +++ M G C   K        
Sbjct: 356 NAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQ 415

Query: 311 -------------------NWQKALELYEHMKSI-------KLKPTVSTMNALITALCDG 344
                              N    L  Y+  K I        +KP V T    I   C  
Sbjct: 416 AIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKE 475

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
             L +   +  DM+  G  PN ITY+ L+ A  +K+ V+    + S+    G++P+L  +
Sbjct: 476 GNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTY 535

Query: 405 ------KCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMV 446
                 +CI+G   R  E  +  NE  L    G  +    +TS+            A  +
Sbjct: 536 SSLIHGECIVG---RVDEALKLFNEMRL---KGITRNVATYTSMISGLSKEGRADEAFKL 589

Query: 447 YREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 506
           Y E +  G IP   V + ++G    P      +  ++    S   L+R N C+      E
Sbjct: 590 YDEMMKIGLIPDDRVFTSLVGSFHKPLTHAGLD--IQKASDSDSVLRRENCCTWPLISAE 647

Query: 507 YDPR--------AFSLLEEAASFGIVPCVSFKEIPVVVDARK 540
           +D +          S++E+     +   V  K IPV    R+
Sbjct: 648 HDGQDNIRERFGVASIVEKIVETWLRWFVHIKRIPVYFVLRR 689



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 68/298 (22%), Positives = 129/298 (43%), Gaps = 27/298 (9%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           V   + S++R  R G +     L ++M ++ ++     Y A    VCK+ +         
Sbjct: 324 VYSSMISWSR--RLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLL 381

Query: 85  KLVP---NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
           ++     +  L  FN  M   C   K  E A ++  ++++ G+ AD   Y  L     K 
Sbjct: 382 EMQSKGVDLNLVIFNTTMDGYCRRGKMDE-ALRLQAIMEKKGINADVFTYNILANGLCKL 440

Query: 141 GKVD-------AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMN--AEVHPVDPD 190
            + D       +M E  VKP+ V F   I    + G +  A  +  +M    EV    P+
Sbjct: 441 HRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEV----PN 496

Query: 191 HITIGALMKACANAGQVDRAREV-YKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACS 247
            IT   L+ A     +V +A ++  +MI+K  +   P++YT +  I+     G  + A  
Sbjct: 497 IITYNTLIDAYCKKEKVKQAHKIKSEMINKGLL---PDLYTYSSLIHGECIVGRVDEALK 553

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
           ++++M  KG+  +    +++I      G+ + AF++  E    G+      ++SL+G+
Sbjct: 554 LFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLVGS 611


>gi|240255563|ref|NP_190542.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546755|sp|P0C8A0.1|PP275_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49730
 gi|332645062|gb|AEE78583.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 140/291 (48%), Gaps = 14/291 (4%)

Query: 127 CKLYTTLITTCAKSGKVDAMFENVK---PDRV---VFNALITACGQSGAVDRAFDVLAEM 180
           CK    +++   + G V  + E ++   P+ +   +F  L+     +  V +A +VL EM
Sbjct: 134 CKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEM 193

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQ 238
               + ++PD    G L+ A    G V  A +V++ + +   K  P +  +T  +    +
Sbjct: 194 PK--YGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMRE---KFPPNLRYFTSLLYGWCR 248

Query: 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298
            G    A  V   M + G+ PD V  + L+    HAGK+  A++++ + + +G    +  
Sbjct: 249 EGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNC 308

Query: 299 YSSLMGA-CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           Y+ L+ A C   K   +A+ ++  M+    +  + T  ALI+  C    + K   VL DM
Sbjct: 309 YTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDM 368

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +  G+ P+ +TY  ++VA E+K+  E  L L+ + K  G  P+L+++  +I
Sbjct: 369 RKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVI 419



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 148/331 (44%), Gaps = 24/331 (7%)

Query: 63  YHARFFNVCKSQKAIKEAFRFFKLV---------PNPTL---STFNMLMSVCASSKDSEG 110
           +H+  + VCKS   I    R F  V          NP L     F +LM   AS+   + 
Sbjct: 128 FHS--YEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKK 185

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAMFENVKPDRVVFNALITA 163
           A +VL  + + GL+ D  ++  L+    K+G V       + M E   P+   F +L+  
Sbjct: 186 AVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYG 245

Query: 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223
             + G +  A +VL +M      ++PD +    L+   A+AG++  A ++   + K   +
Sbjct: 246 WCREGKLMEAKEVLVQMKEA--GLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFE 303

Query: 224 GTPEVYTIAINC-CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
                YT+ I   C      + A  V+ +M + G   D V  +ALI      G ++  + 
Sbjct: 304 PNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYS 363

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +L + + +G+    ++Y  +M A    + +++ LEL E MK     P +   N +I   C
Sbjct: 364 VLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLAC 423

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
              ++ + + + ++M++ GL P   T+ I++
Sbjct: 424 KLGEVKEAVRLWNEMEANGLSPGVDTFVIMI 454



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 84/360 (23%), Positives = 153/360 (42%), Gaps = 40/360 (11%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-----KLVP 88
           R      + + +++L++M + GL   + V+      +CK+  ++KEA + F     K  P
Sbjct: 176 RFASANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNG-SVKEASKVFEDMREKFPP 234

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           N    T ++L   C   K  E A +VL  ++EAGL+                        
Sbjct: 235 NLRYFT-SLLYGWCREGKLME-AKEVLVQMKEAGLE------------------------ 268

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQV 207
              PD VVF  L++    +G +  A+D++ +M       +P+      L++A C    ++
Sbjct: 269 ---PDIVVFTNLLSGYAHAGKMADAYDLMNDMRK--RGFEPNVNCYTVLIQALCRTEKRM 323

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           D A  V+  + +Y  +     YT  I+   + G  +   SV DDM KKGV+P +V    +
Sbjct: 324 DEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQI 383

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           +       + E   E++++ K +G    ++ Y+ ++         ++A+ L+  M++  L
Sbjct: 384 MVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGL 443

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL--CPNTITYSILLVACERKDDVEVG 385
            P V T   +I        L +      +M S G+   P   T   LL    R D +E+ 
Sbjct: 444 SPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAPQYGTLKSLLNNLVRDDKLEMA 503


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 160/359 (44%), Gaps = 37/359 (10%)

Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           P  V +N LI AC   G V +A +V  +M A+   +DP+ +T   ++ A    G +  A 
Sbjct: 184 PSVVTYNTLINACRFQGTVAKAQEVWDQMVAQ--QIDPNVVTYTTMICALCEEGCIGDAE 241

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
            ++  + +  ++     Y + ++   Q  D   A  +Y ++ K G+ P+ V  + LID  
Sbjct: 242 RLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGF 301

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
             A +   A  +  E    G++  +  Y+SLM     + N Q+AL LY+ M  + L P  
Sbjct: 302 CKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDE 361

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
            T + ++  LCDG Q+      L  ++  G+  N   Y+ L+    R  ++E  L   ++
Sbjct: 362 FTCSIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTR 421

Query: 392 AKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAI 451
             E G+ PN+V +  +I   S+R                G+ QI       A+ +Y E +
Sbjct: 422 MTEVGIEPNVVSYSSLIDGHSKR----------------GKMQI-------AMAIYTEMV 458

Query: 452 VAGTIPTVEVVSKVL------GCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
             G  P V   + ++      G +   +   + + ++EN G+S +A+  S    L+DG 
Sbjct: 459 AKGIEPNVVTYTALIHGHAKNGGIDAAFR--LHKEMIEN-GISPNAITVS---VLVDGL 511



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 94/419 (22%), Positives = 176/419 (42%), Gaps = 37/419 (8%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI     QG +++  ++ + M  + + D + V +         +  I +A R F  
Sbjct: 188 TYNTLINACRFQGTVAKAQEVWDQMVAQQI-DPNVVTYTTMICALCEEGCIGDAERLFDA 246

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T+N+LMS      D   A  + + + ++GL  +  ++TTLI    K+ +
Sbjct: 247 MKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKR 306

Query: 143 VD---AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
                 MF       V P   V+N+L+    +SG    A  +  EM      + PD  T 
Sbjct: 307 FSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTR--LGLCPDEFTC 364

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             +++   + GQ+  A    + + +  +      Y   I+   + G+ E A +    MT+
Sbjct: 365 SIVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTE 424

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G+ P+ V  S+LID     GK++ A  I  E   +GI   +++Y++L+   +       
Sbjct: 425 VGIEPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDA 484

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL--------SDMKSL------ 360
           A  L++ M    + P   T++ L+  LC  +++ + +  +        SD+ S+      
Sbjct: 485 AFRLHKEMIENGISPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTI 544

Query: 361 ---GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY 415
               L PN++ Y  L+              L S  ++ G+IP+   +  +I G C   Y
Sbjct: 545 EEECLIPNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRGQCMLGY 603



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 97/187 (51%), Gaps = 5/187 (2%)

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
           SQ G  + A  V+  +     +P     +A++D    A +   A+E+  E   +G+   +
Sbjct: 130 SQMGLLDEALYVFRRLRTLPALPA---CNAVLDGLVKARRPGCAWELFDEMLRRGLVPSV 186

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           ++Y++L+ AC       KA E+++ M + ++ P V T   +I ALC+   +     +   
Sbjct: 187 VTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIGDAERLFDA 246

Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRR 414
           MK  G+ PN  TY++L+    ++DDV   ++L  +  + G+ PN V+F  +I G C ++R
Sbjct: 247 MKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKR 306

Query: 415 YEKARTL 421
           + +A+ +
Sbjct: 307 FSEAKGM 313



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 80/168 (47%), Gaps = 6/168 (3%)

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
           WE    ++D+M ++G++P  V  + LI+     G V  A E+  +   Q I   +++Y++
Sbjct: 171 WE----LFDEMLRRGLVPSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTT 226

Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
           ++ A         A  L++ MK   ++P   T N L++  C  D +   + +  ++   G
Sbjct: 227 MICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSG 286

Query: 362 LCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L PN + ++ L+   C+ K   E   M L   +  GV P + ++  ++
Sbjct: 287 LNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRF-GVAPTVPVYNSLM 333


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 158/331 (47%), Gaps = 14/331 (4%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN--------VKPDRVVFN 158
           D   A      V   G + +   Y TLI    K G+  A  E         V+ D V++N
Sbjct: 154 DIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYN 213

Query: 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMI 217
            +I    +   V+ AFD  +EM A+   + P  +T   L+      GQ+ D    ++KMI
Sbjct: 214 TIIDGVCKDKLVNDAFDFYSEMVAK--RICPTVVTYNTLICGLCIMGQLKDAIGLLHKMI 271

Query: 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 277
            + NI  T   ++I ++   + G  + A +V+  M KK V P+ V  ++L++      +V
Sbjct: 272 LE-NINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEV 330

Query: 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
             A  I       G++  + SYS ++      K   +A++L+E M   ++ P V T N+L
Sbjct: 331 NKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSL 390

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           I  LC   ++   ++++ +M   G  PN ITY+ LL A  +   V+  + LL++ K+  +
Sbjct: 391 IDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNI 450

Query: 398 IPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
            P++  +  +I G+C S R + A+ + E VL
Sbjct: 451 QPSVCTYNILINGLCKSGRLKDAQKVFEDVL 481



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 158/349 (45%), Gaps = 42/349 (12%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFF-KLVPN- 89
           N L + G+    +++L  ++ K L+ +D V Y+     VCK  K + +AF F+ ++V   
Sbjct: 182 NGLCKVGQTKAALEMLRRIDGK-LVRLDVVMYNTIIDGVCK-DKLVNDAFDFYSEMVAKR 239

Query: 90  --PTLSTFNML---MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
             PT+ T+N L   + +    KD+ G    + L                           
Sbjct: 240 ICPTVVTYNTLICGLCIMGQLKDAIGLLHKMIL--------------------------- 272

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
              EN+ P    F+ L+ A  + G V  A +V   M  +   V P+ +T  +LM      
Sbjct: 273 ---ENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKK--DVKPNIVTYNSLMNGYCLV 327

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
            +V++A  ++  + +  +      Y+I I+   +    + A  ++++M  K + PD V  
Sbjct: 328 NEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTY 387

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++LID    +G++  A +++ E  ++G    II+Y+SL+ A     +  KA+EL   +K 
Sbjct: 388 NSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKD 447

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             ++P+V T N LI  LC   +L    +V  D+   G   +  TY+ ++
Sbjct: 448 HNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMI 496



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/276 (23%), Positives = 115/276 (41%), Gaps = 40/276 (14%)

Query: 175 DVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
           ++++  N  +H  +P    I  G ++ +   A        +++ +    I       +I 
Sbjct: 51  NLVSSFNHLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSIL 110

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI---------DFAGH---------- 273
           INC SQ G    + SV+ ++ KKG  PD + L+ LI           A H          
Sbjct: 111 INCFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGF 170

Query: 274 ----------------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
                            G+ +AA E+L+    + + + ++ Y++++      K    A +
Sbjct: 171 QLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFD 230

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-C 376
            Y  M + ++ PTV T N LI  LC   QL   + +L  M    + P   T+SIL+ A C
Sbjct: 231 FYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFC 290

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           +     E   + +   K+D V PN+V +  ++ G C
Sbjct: 291 KEGKVKEAKNVFVVMMKKD-VKPNIVTYNSLMNGYC 325


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 148/346 (42%), Gaps = 20/346 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N  +++ +  E  +L ++M  +G++     Y++     CK  +       F+ +     +
Sbjct: 327 NAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCS 386

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + TFN L+     +K  +   ++L  + E GL AD   Y TLI      G ++A  + 
Sbjct: 387 PDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDL 446

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE---------VHPVDPDHI 192
                   V PD V  N L+     +G +  A ++   M             + V+PD  
Sbjct: 447 SQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQ 506

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   L+    N G+   A E+YK +    I      Y+  IN   +    + A  ++D M
Sbjct: 507 TYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSM 566

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             K   PD V  + L+     AG+V+   E+  E   +GI    I+Y +L+       N 
Sbjct: 567 GSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNI 626

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
             AL++++ M S  + P   T+ +++T L   ++L + + +L D++
Sbjct: 627 NGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQ 672



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 145/327 (44%), Gaps = 14/327 (4%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEN 149
           +FN+L+    S      A      + + G + D   ++TL+       +V    D   + 
Sbjct: 114 SFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM 173

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVD 208
            +P+ V F  L+    + G V  A  +L  M  +   + P+ IT G ++   C     V 
Sbjct: 174 CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVED--GLQPNQITYGTIVDGMCKIGDTVS 231

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
               + KM    +IK    +Y+  I+   + G    A ++Y +M +KG+ PD    + +I
Sbjct: 232 ALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMI 291

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           D    +G+   A  +LQE   + I+  +++YS+L+ A    + + +A ELY+ M    + 
Sbjct: 292 DGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGII 351

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL---VACERKDDVEVG 385
           P   T N++I   C  ++L     +   M + G  P+  T++ L+      +R DD   G
Sbjct: 352 PNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDD---G 408

Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMC 411
             LL +  E G++ +   +  +I G C
Sbjct: 409 TELLHEMTETGLVADTTTYNTLIHGFC 435



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 176/424 (41%), Gaps = 28/424 (6%)

Query: 32  YNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFF 84
           +N+L    +R  R    I L + MERK +      ++      C   K   A+    +  
Sbjct: 80  FNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKIT 139

Query: 85  KLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           KL   P + TF+ L+  +C   + SE     L L  +   + +   +TTL+    + G+V
Sbjct: 140 KLGFQPDVVTFSTLLHGLCVEDRVSEA----LDLFHQM-CRPNVVTFTTLMNGLCREGRV 194

Query: 144 -------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                  D M E+ ++P+++ +  ++    + G    A ++L +M    H + P+ +   
Sbjct: 195 VEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSH-IKPNVVIYS 253

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           A++      G+   A  +Y  + +  I      Y   I+    +G W  A  +  +M ++
Sbjct: 254 AIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLER 313

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + P+ V  SALI+      K   A E+  E   +GI    I+Y+S++           A
Sbjct: 314 KINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAA 373

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             ++  M +    P V T N LI   C   ++    E+L +M   GL  +T TY+ L+  
Sbjct: 374 EHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHG 433

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-----RYEKARTLNEHVLSFN 429
                D+   L L  Q    GV P++V    ++ G+C         E  + + +  +  +
Sbjct: 434 FCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLD 493

Query: 430 SGRP 433
           + RP
Sbjct: 494 ASRP 497



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 177/409 (43%), Gaps = 38/409 (9%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L R+GR+ E + LL+ M   GL      Y      +CK    +       K+      
Sbjct: 186 NGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHI 245

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------ 142
            P +  ++ ++           A  +   +QE G+  D   Y  +I     SG+      
Sbjct: 246 KPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQR 305

Query: 143 -VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP--VDPDHITIGALM 198
            +  M E  + P+ V ++ALI A  +    +R F    E+  E+ P  + P+ IT  +++
Sbjct: 306 LLQEMLERKINPNVVTYSALINAYVK----ERKFFEAEELYDEMLPRGIIPNTITYNSMI 361

Query: 199 KACANAGQVDRAREVYKMIHKYNIKG-TPEVYTI--AINCCSQTGDWEFACSVYDDMTKK 255
                  ++D A  ++ ++     KG +P+V+T    I+        +    +  +MT+ 
Sbjct: 362 DGFCKQNRLDAAEHMFYVMAT---KGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTET 418

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQK 314
           G++ D    + LI      G + AA ++ Q+  + G+   I++ ++L+ G C N K  + 
Sbjct: 419 GLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGK-LKD 477

Query: 315 ALELYEHMKSIKL-----------KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
           ALE+++ M+  K+           +P V T N LI+ L +  +  +  E+  +M   G+ 
Sbjct: 478 ALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIV 537

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           PNTITYS ++    ++  ++    +          P++V F  ++ G C
Sbjct: 538 PNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYC 586



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 92/435 (21%), Positives = 181/435 (41%), Gaps = 55/435 (12%)

Query: 13  YPNGKHANYAHDVSEQ---------LHSYNRLI----RQGRISECIDLLEDM-ERKGLLD 58
           + +G+H++ AH++  +         L +YN +I      GR SE   LL++M ERK  ++
Sbjct: 260 WKDGRHSD-AHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERK--IN 316

Query: 59  MDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQV 114
            + V ++   N    ++   EA   + +++P    P   T+N ++         + A  +
Sbjct: 317 PNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHM 376

Query: 115 LRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQ 166
             ++   G   D   + TLI     + ++D   E         +  D   +N LI     
Sbjct: 377 FYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCL 436

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
            G ++ A D+  +M +    V PD +T   L+    + G++  A E++K + K  +    
Sbjct: 437 VGDLNAALDLSQQMISS--GVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKM---- 490

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
                         D + +          GV PD    + LI    + GK   A E+ +E
Sbjct: 491 --------------DLDASRPF------NGVEPDVQTYNILISGLINEGKFLEAEELYKE 530

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
             ++GI    I+YSS++          +A ++++ M S    P V T N L++  C   +
Sbjct: 531 MPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGR 590

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           +   +E+  +M   G+  + ITY  L+    +  ++   L +  +    GV P+ +  + 
Sbjct: 591 VDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRS 650

Query: 407 IIGMCSRRYEKARTL 421
           ++ +   + E  R +
Sbjct: 651 MLTVLWSKEELKRAV 665



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 75/354 (21%), Positives = 143/354 (40%), Gaps = 29/354 (8%)

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            ++ A D+ ++M     P+ P  I    LM       + D    +Y+ + +  I      
Sbjct: 57  GLEDAIDLFSDM-VRSRPL-PSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYS 114

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           + I I C        FA S +  +TK G  PD V  S L+       +V  A ++     
Sbjct: 115 FNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLF---- 170

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD-GD-- 345
           +Q     ++++++LM          +A+ L + M    L+P   T   ++  +C  GD  
Sbjct: 171 HQMCRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTV 230

Query: 346 ---QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
               L + ME +S +K     PN + YS ++    +         L ++ +E G+ P+L 
Sbjct: 231 SALNLLRKMEEMSHIK-----PNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLF 285

Query: 403 MFKCII-GMCSR-RYEKA---------RTLNEHVLSFNSG-RPQIENKWTSLALMVYREA 450
            + C+I G CS  R+ +A         R +N +V+++++     ++ +    A  +Y E 
Sbjct: 286 TYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEM 345

Query: 451 IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
           +  G IP     + ++         D  E +   +     +       +LIDG+
Sbjct: 346 LPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGY 399


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 177/422 (41%), Gaps = 59/422 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN L+    R G I +   ++E M   G       Y+     +C++ K + EAFR    
Sbjct: 276 TYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGK-VDEAFRLKDE 334

Query: 87  VPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +       P + T+N L   C   + S  A ++L  ++E G+KA    +  +I    K G
Sbjct: 335 MERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDG 394

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD----- 188
           +++           + + PD + +N LI A  ++G + +A+ ++ EM      +D     
Sbjct: 395 ELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLN 454

Query: 189 ----------------------------PDHITIGALMKACANAGQVDRAREVY-KMIHK 219
                                       PD ++ G +M A       + A  ++ +MI K
Sbjct: 455 TVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEK 514

Query: 220 YNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV 277
              K TP +  Y   I   S+ G  + A    +++ +KG++PD+   + +I      G +
Sbjct: 515 ---KLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDL 571

Query: 278 EAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           E AF+   +         +++ ++LM G C N K   KAL+L+E       K  V T N 
Sbjct: 572 ENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGK-LDKALKLFESWVEKGKKVDVITYNT 630

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           LI  +C    +   +   +DM++ GL P+  TY+++L A       E    +L +  E G
Sbjct: 631 LIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESG 690

Query: 397 VI 398
            +
Sbjct: 691 TL 692



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 176/400 (44%), Gaps = 21/400 (5%)

Query: 30  HSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA----F 81
           +++N L+     +G +++ +  L  M+  GL   D V +    N    +  + EA     
Sbjct: 205 YTFNLLVHTHCSKGTLADALSTLSTMQGFGL-SPDAVTYNTLLNAHCRKGMLGEARALLA 263

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R  K    PT  T+N L+S  A     + A +V+  +   G + D   Y  L     ++G
Sbjct: 264 RMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAG 323

Query: 142 KVDAMFE---------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           KVD  F           + PD V +N L  AC +      A  +L EM  +   V    +
Sbjct: 324 KVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREK--GVKATLV 381

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T   ++K     G+++ A      +    +      Y   I+   + G+   A ++ D+M
Sbjct: 382 THNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEM 441

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            ++G+  D   L+ ++       + E A  +LQ    +G     +SY ++M A     N 
Sbjct: 442 VRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNS 501

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           + AL L++ M   KL P++ST N LI  L    +L + ++ L+++   GL P+  TY+I+
Sbjct: 502 EPALRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNII 561

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + A  ++ D+E      ++  E+   P++V    ++ G+C
Sbjct: 562 IHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLC 601



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 87/415 (20%), Positives = 163/415 (39%), Gaps = 55/415 (13%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A+     L +YN L     + G++ E   L ++MER G L  D V +    + C   +  
Sbjct: 302 ANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCS 361

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            +A R  + +       TL T N+++       + EGA   L  + + GL  D   Y TL
Sbjct: 362 SDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTL 421

Query: 134 ITTCAKSGKV-------DAM------------------------FENVK----------- 151
           I    K+G +       D M                        +E  +           
Sbjct: 422 IHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGF 481

Query: 152 -PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
            PD V +  ++ A  +    + A  +  EM  +   + P   T   L+K  +  G++  A
Sbjct: 482 MPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEK--KLTPSISTYNTLIKGLSRMGRLKEA 539

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            +    + +  +      Y I I+   + GD E A   ++ M +    PD V  + L++ 
Sbjct: 540 IDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNG 599

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               GK++ A ++ +    +G  V +I+Y++L+       +   AL  +  M++  L+P 
Sbjct: 600 LCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVDTALHFFADMEARGLQPD 659

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
             T N +++AL +  +  +   +L  +   G    + ++S  L+     D+ E G
Sbjct: 660 AFTYNVVLSALSEAGRTEEAQNMLHKLAESGTL--SQSFSSPLLKPSSVDEAESG 712



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 115/252 (45%), Gaps = 19/252 (7%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  + +YN LI    R GR+ E ID L ++  KGL+  D  Y+      CK +  ++ A
Sbjct: 516 LTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCK-EGDLENA 574

Query: 81  FRFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F+F  K+V N   P + T N LM+    +   + A ++     E G K D   Y TLI T
Sbjct: 575 FQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQT 634

Query: 137 CAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K G VD             ++PD   +N +++A  ++G  + A ++L ++ AE   + 
Sbjct: 635 MCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKL-AESGTLS 693

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
               +   L  +  +  +  +  +  +   +       E YT  +N    +G ++ A ++
Sbjct: 694 -QSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCTSGQFKEAKAI 752

Query: 249 YDDMTKKGVIPD 260
            D+M +KG+  D
Sbjct: 753 LDEMMQKGMSVD 764



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%)

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
           A S + + Q +L+ +  + +++L P   T N L+   C    L   +  LS M+  GL P
Sbjct: 178 ARSPSTSPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSP 237

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           + +TY+ LL A  RK  +     LL++ K+DGV P    +  ++   +R
Sbjct: 238 DAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYAR 286



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 1/154 (0%)

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+    + L+      G +  A   L   +  G+S   ++Y++L+ A        +A  L
Sbjct: 202 PNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARAL 261

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
              MK   + PT  T N L++A      + +  +V+  M + G  P+  TY++L     +
Sbjct: 262 LARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQ 321

Query: 379 KDDVEVGLMLLSQAKEDG-VIPNLVMFKCIIGMC 411
              V+    L  + +  G ++P++V +  +   C
Sbjct: 322 AGKVDEAFRLKDEMERLGTLLPDVVTYNTLADAC 355


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 176/393 (44%), Gaps = 21/393 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           ++R  R    I L + MERK +      +       C   K   A+    +  KL  +P 
Sbjct: 89  VVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPD 148

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
           + TFN L+  +C   + SE A  +   + E   + +   +TTL+    + G++       
Sbjct: 149 VVTFNTLLHGLCVEDRVSE-ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALL 207

Query: 144 DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M E+ ++P ++ +  ++    + G    A ++L +M  EV  + P+ +   A++ +  
Sbjct: 208 DRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME-EVSHIIPNVVIYSAIIDSLC 266

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYT---IAINCCSQTGDWEFACSVYDDMTKKGVIP 259
             G+   A+ ++  + +  I   P+++T   + +  CS +G W  A  +  +M ++ + P
Sbjct: 267 KDGRHSDAQNLFTEMQEKGI--FPDLFTYNSMIVGFCS-SGRWSDAEQLLQEMLERKISP 323

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  +ALI+     GK   A E+  E   +GI    I+YSS++           A  ++
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M +    P + T N LI   C   ++   ME+L +M   GL  +T TY+ L+      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            D+   L LL +    G+ P++V    ++ G+C
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLC 476



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 177/407 (43%), Gaps = 34/407 (8%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------- 85
           N L R+GRI E + LL+ M   GL      Y      +CK    +  A    +       
Sbjct: 192 NGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVS-ALNLLRKMEEVSH 250

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--- 142
           ++PN  + +  ++ S+C   + S+ A  +   +QE G+  D   Y ++I     SG+   
Sbjct: 251 IIPNVVIYS-AIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSD 308

Query: 143 ----VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
               +  M E  + PD V +NALI A  + G    A ++  EM      + P+ IT  ++
Sbjct: 309 AEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP--RGIIPNTITYSSM 366

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +       ++D A  ++ ++           +   I+        +    +  +MT+ G+
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKAL 316
           + D    + LI      G + AA ++LQE  + G+   I++  +L+ G C N K  + AL
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK-LKDAL 485

Query: 317 ELYEHMKSIK-----------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           E+++ M+  K           ++P V T N LI+ L +  +  +  E+  +M   G+ P+
Sbjct: 486 EMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           TITYS ++    ++  ++    +          PN+V F  +I G C
Sbjct: 546 TITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 157/359 (43%), Gaps = 26/359 (7%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI    ++G+  E  +L ++M  +G++     Y +     CK Q  +  A
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRLDAA 379

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F L+     +P L TFN L+     +K  +   ++L  + E GL AD   Y TLI  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 137 CAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAE----- 183
               G ++A  + ++        PD V  + L+     +G +  A ++   M        
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 184 -VHP---VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
             HP   V+PD  T   L+    N G+   A E+Y+ +    I      Y+  I+   + 
Sbjct: 500 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
              + A  ++D M  K   P+ V  + LI+    AG+V+   E+  E   +GI    I+Y
Sbjct: 560 SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITY 619

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
            +L+       N   AL++++ M S  + P   T+  ++T L   ++L + + +L  ++
Sbjct: 620 ITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/372 (20%), Positives = 147/372 (39%), Gaps = 19/372 (5%)

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            ++ A D+ ++M     P+ P  +    LM       + D    +Y+ + +  I+     
Sbjct: 59  GLEDAIDLFSDM-LRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYS 116

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           +TI I C        FA S +  +TK G+ PD V  + L+       +V  A  +  +  
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMF 176

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
                  ++++++LM          +A+ L + M    L+PT  T   ++  +C      
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 349 KTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC- 406
             + +L  M+ +  + PN + YS ++ +  +         L ++ +E G+ P+L  +   
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 407 IIGMCSR-RYEKA---------RTLNEHVLSFNSGRPQI--ENKWTSLALMVYREAIVAG 454
           I+G CS  R+  A         R ++  V+++N+       E K+   A  +Y E +  G
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFE-AEELYDEMLPRG 355

Query: 455 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAF 512
            IP     S ++         D  E +   +     +       +LIDG+   +      
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 513 SLLEEAASFGIV 524
            LL E    G+V
Sbjct: 416 ELLHEMTETGLV 427


>gi|302768647|ref|XP_002967743.1| hypothetical protein SELMODRAFT_409004 [Selaginella moellendorffii]
 gi|300164481|gb|EFJ31090.1| hypothetical protein SELMODRAFT_409004 [Selaginella moellendorffii]
          Length = 704

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 162/358 (45%), Gaps = 21/358 (5%)

Query: 33  NRLIRQGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVP 88
           N  IR+   +   + +LE+ +  G+   ++  +A     C+     + A   +   K   
Sbjct: 83  NEAIRKAESVPAALKILEETKAAGVHTPNEATYASLMLACRKLGQGERALTIYEAMKQTK 142

Query: 89  NP-TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P ++ T+N L+S C  +   + AF+V + ++EAG+K D   YT+LI T  +S ++    
Sbjct: 143 EPISIRTYNTLISCCQQALRMDDAFRVKKELEEAGVKPDVVTYTSLIDTVIRSTRIPP-- 200

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
                 R    +++  C     +++A  +  EM  +   + PD  T   L++A   A   
Sbjct: 201 ----AQRFCDKSIVETC----RLEKALQLYKEM--QTLSITPDSKTYNTLIQAAGEAKAT 250

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           ++A E+Y+ + K  +      + + + C    G  + A  VY++    G+       + L
Sbjct: 251 EKALELYQSLTKVGLSANSFTFDLLLKCLGSGGRLKVALQVYNEARAAGITLYTSTYNFL 310

Query: 268 IDFAGHAGK--VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           I     A +   E A+   +E K++ + V  +++ +L+ A S A +    ++ ++ MK +
Sbjct: 311 IGACATAPQPNAERAWAFYEEMKSKNLKVNALTFINLISASSKAADNAGVMKAFQLMKEL 370

Query: 326 KLKP--TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
                 T +T N ++ +    + L   +++  +MK  G  PN  TYS L+ AC R  D
Sbjct: 371 DYTKSITTTTYNQILESASIANTLEDALKIYYEMKKAGYKPNVSTYSSLISACIRNKD 428



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 167/388 (43%), Gaps = 51/388 (13%)

Query: 163 ACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
           A  ++ +V  A  +L E  A  VH   P+  T  +LM AC   GQ +RA  +Y+ + +  
Sbjct: 85  AIRKAESVPAALKILEETKAAGVHT--PNEATYASLMLACRKLGQGERALTIYEAMKQTK 142

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV---- 277
              +   Y   I+CC Q    + A  V  ++ + GV PD V  ++LID    + ++    
Sbjct: 143 EPISIRTYNTLISCCQQALRMDDAFRVKKELEEAGVKPDVVTYTSLIDTVIRSTRIPPAQ 202

Query: 278 -------------EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
                        E A ++ +E +   I+    +Y++L+ A   AK  +KALELY+ +  
Sbjct: 203 RFCDKSIVETCRLEKALQLYKEMQTLSITPDSKTYNTLIQAAGEAKATEKALELYQSLTK 262

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER--KDDV 382
           + L     T + L+  L  G +L   ++V ++ ++ G+   T TY+ L+ AC    + + 
Sbjct: 263 VGLSANSFTFDLLLKCLGSGGRLKVALQVYNEARAAGITLYTSTYNFLIGACATAPQPNA 322

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL-------------SFN 429
           E       + K   +  N + F  +I   S+  + A  +    L             ++N
Sbjct: 323 ERAWAFYEEMKSKNLKVNALTFINLISASSKAADNAGVMKAFQLMKELDYTKSITTTTYN 382

Query: 430 S--GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADIR------ER 480
                  I N     AL +Y E   AG  P V   S ++  C++   N D +      E 
Sbjct: 383 QILESASIANTLED-ALKIYYEMKKAGYKPNVSTYSSLISACIR---NKDFKQAQTLEEE 438

Query: 481 LVENLGVSADALKRSNLCSLIDGFGEYD 508
             +N+ VS   L +S L SLI  +G+ D
Sbjct: 439 EFKNVDVS---LNQSVLHSLIRAYGDAD 463


>gi|224089803|ref|XP_002308816.1| predicted protein [Populus trichocarpa]
 gi|222854792|gb|EEE92339.1| predicted protein [Populus trichocarpa]
          Length = 700

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 137/287 (47%), Gaps = 7/287 (2%)

Query: 144 DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M E  VKPD   F+ +I+        D+A +   +M +    ++PD +T+  ++ +  
Sbjct: 200 DEMLERGVKPDNFTFSTIISCARLCNLADKAVEWFEKMPS--FGLEPDDVTLSTMIDSYG 257

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AG V++A  +Y        +     ++  I      G+++   +VY++M   GV P+ V
Sbjct: 258 RAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLV 317

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + L+D  G A +     +  Q+  + G+S   ++Y++L+ A   A+  + A ++Y  M
Sbjct: 318 IYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAALLHAYGRARYGEDAFKIYREM 377

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           K   L   V   N+++    D   + K +E+  DMKS G+ P++ T+S ++        V
Sbjct: 378 KEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKV 437

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFN 429
                 L++  E G  PN+ +   +I  C   Y KA+ +++ V +FN
Sbjct: 438 SEAENTLNEMFEAGFQPNIFILTSLI-QC---YGKAQRIDDVVNTFN 480



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 149/317 (47%), Gaps = 17/317 (5%)

Query: 80  AFRFF--KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT- 136
           A +FF  +L  N  +  +N+ + V    +D + A ++   + E G+K D   ++T+I+  
Sbjct: 162 ALKFFQERLKFNREVVVYNVTLKVFRKGRDLDKAEKLFDEMLERGVKPDNFTFSTIISCA 221

Query: 137 --CAKSGKVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
             C  + K    FE      ++PD V  + +I + G++G V++A  +     A       
Sbjct: 222 RLCNLADKAVEWFEKMPSFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDR--ARTGEWRL 279

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSV 248
           D      L++    AG  D    VY+ +    +K    +Y I ++   +    W+     
Sbjct: 280 DATAFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVK-KF 338

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           Y D+   G+ P  V  +AL+   G A   E AF+I +E K +G+ + ++ Y+S++  C++
Sbjct: 339 YQDIIDNGLSPSFVTYAALLHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCAD 398

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
             +  KA+E++E MKS  +KP   T +++IT      ++ +    L++M   G  PN   
Sbjct: 399 LGHVDKAVEIFEDMKSSGIKPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFI 458

Query: 369 YSILLVA---CERKDDV 382
            + L+      +R DDV
Sbjct: 459 LTSLIQCYGKAQRIDDV 475



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 105/221 (47%)

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +     +K       +D+A +++  + +  +K     ++  I+C       + A   ++ 
Sbjct: 177 VVYNVTLKVFRKGRDLDKAEKLFDEMLERGVKPDNFTFSTIISCARLCNLADKAVEWFEK 236

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M   G+ PD+V LS +ID  G AG VE A  +   A+     +   ++S+L+     A N
Sbjct: 237 MPSFGLEPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAGN 296

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           +   L +YE MK++ +KP +   N L+ A+    +  +  +   D+   GL P+ +TY+ 
Sbjct: 297 FDGCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIIDNGLSPSFVTYAA 356

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           LL A  R    E    +  + KE G+  N+V++  I+ MC+
Sbjct: 357 LLHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCA 397



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/312 (19%), Positives = 130/312 (41%), Gaps = 22/312 (7%)

Query: 34  RLIRQGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           ++ R+GR + +   L ++M  +G+   D    +   +  +      +A  +F+ +P+   
Sbjct: 184 KVFRKGRDLDKAEKLFDEMLERGV-KPDNFTFSTIISCARLCNLADKAVEWFEKMPSFGL 242

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
            P   T + ++     + + E A  +    +    + D   ++TLI     +G  D    
Sbjct: 243 EPDDVTLSTMIDSYGRAGNVEKALSLYDRARTGEWRLDATAFSTLIRIYKVAGNFDGCLN 302

Query: 146 MFEN-----VKPDRVVFNALITACGQS---GAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
           ++E      VKP+ V++N L+ A G++     V + +  + +     + + P  +T  AL
Sbjct: 303 VYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDIID-----NGLSPSFVTYAAL 357

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           + A   A   + A ++Y+ + +  +     +Y   +  C+  G  + A  +++DM   G+
Sbjct: 358 LHAYGRARYGEDAFKIYREMKEKGLGLNVVLYNSILAMCADLGHVDKAVEIFEDMKSSGI 417

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD    S++I      GKV  A   L E    G    I   +SL+     A+     + 
Sbjct: 418 KPDSWTFSSMITIFSCCGKVSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDVVN 477

Query: 318 LYEHMKSIKLKP 329
            +  +  + + P
Sbjct: 478 TFNRIFELVITP 489



 Score = 45.8 bits (107), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 41/246 (16%), Positives = 102/246 (41%), Gaps = 36/246 (14%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +++ LIR     G    C+++ E+M+  G+     +Y+     + ++++  +    +  +
Sbjct: 283 AFSTLIRIYKVAGNFDGCLNVYEEMKALGVKPNLVIYNILLDAMGRAKRPWQVKKFYQDI 342

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           + N   P+  T+  L+     ++  E AF++ R ++E GL  +                 
Sbjct: 343 IDNGLSPSFVTYAALLHAYGRARYGEDAFKIYREMKEKGLGLNV---------------- 386

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                      V++N+++  C   G VD+A ++  +M +    + PD  T  +++   + 
Sbjct: 387 -----------VLYNSILAMCADLGHVDKAVEIFEDMKS--SGIKPDSWTFSSMITIFSC 433

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G+V  A      + +   +    + T  I C  +    +   + ++ + +  + PD+ F
Sbjct: 434 CGKVSEAENTLNEMFEAGFQPNIFILTSLIQCYGKAQRIDDVVNTFNRIFELVITPDDRF 493

Query: 264 LSALID 269
              L++
Sbjct: 494 CGCLLN 499


>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 886

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 135/303 (44%), Gaps = 45/303 (14%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKS---GKVDAMFENV-----KPDRVVFNALITACGQSG 168
           L ++ G K D   YTT++    ++   G ++ + + +     +P+ V +N LI + G++ 
Sbjct: 354 LKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRAN 413

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            ++ A +V  +M        PD +T   L+   A AG +D A ++Y+ +    +      
Sbjct: 414 YLNEAMNVFNQMQEA--GCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFT 471

Query: 229 YTIAINCCSQTG-----------------------------------DWEFACSVYDDMT 253
           Y++ INC  + G                                   +++ A  +Y DM 
Sbjct: 472 YSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQ 531

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
             G  PD+V  S +++  GH G +E A  +  E + +        Y  L+     A N +
Sbjct: 532 NAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVE 591

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA + Y+ M    L+P V T N+L++     +++ +  E+L +M +LGL P+  TY++LL
Sbjct: 592 KAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLL 651

Query: 374 VAC 376
             C
Sbjct: 652 SCC 654



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 107/265 (40%), Gaps = 45/265 (16%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P   T+N L+     +     A  V   +QEAG K D   Y TLI   AK+G +D    M
Sbjct: 397 PNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDM 456

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           ++ ++     PD   ++ +I   G++G +  A  +  EM  +     P+ +T   +M   
Sbjct: 457 YQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQ--GCTPNLVTYNIMMDLH 514

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A A     A ++Y+ +     +     Y+I +      G  E A +V+ +M +K  IPDE
Sbjct: 515 AKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDE 574

Query: 262 VFLSALIDFAGHAGKVEAA-----------------------------------FEILQE 286
                L+D  G AG VE A                                   +E+LQ 
Sbjct: 575 PVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQN 634

Query: 287 AKNQGISVGIISYSSLMGACSNAKN 311
               G+   + +Y+ L+  C++ ++
Sbjct: 635 MLALGLRPSLQTYTLLLSCCTDGRS 659



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 84/201 (41%), Gaps = 3/201 (1%)

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           Y +  +   K     YT  +    +   +     + D+M + G  P+ V  + LI   G 
Sbjct: 352 YWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGR 411

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           A  +  A  +  + +  G     ++Y +L+   + A     A+++Y+ M++  L P   T
Sbjct: 412 ANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFT 471

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            + +I  L     LP   ++  +M   G  PN +TY+I++    +  + +  L L    +
Sbjct: 472 YSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQ 531

Query: 394 EDGVIPNLVMFKC---IIGMC 411
             G  P+ V +     ++G C
Sbjct: 532 NAGFEPDKVTYSIVMEVLGHC 552


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 183/414 (44%), Gaps = 30/414 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L +QG   + + + ++M  +G++   K+Y     ++C + K I EA +    + +    P
Sbjct: 217 LCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGK-IDEAVQLLGSMKDKGCLP 275

Query: 91  TLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
              T+N  +S +C   + +E AFQ L ++Q+ G     K Y+ LI    ++ + D  F  
Sbjct: 276 DEVTYNAFLSGLCKVGRVNE-AFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGY 334

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  N+ PD V++  +I  C ++G ++ A   L  M  +     PD      ++K  
Sbjct: 335 YKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKK--GFVPDTFCYNTVLKVL 392

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            + G ++RA  +   + + N+       TI I    + G  + A  ++D+M + G  P  
Sbjct: 393 CDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTV 452

Query: 262 VFLSALIDFAGHAGKVEAA---FEILQEAKNQGI----SVG---IISYSSLMGACSNAKN 311
           +  +ALID     G++E A   F  ++   N  +    ++G   +    SL     +   
Sbjct: 453 MTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQ 512

Query: 312 WQKALELYEHMKSI---KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
             + L+ Y+ ++SI    + P V T N LI  LC    L   + +  +++  G+ P+ IT
Sbjct: 513 SGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEIT 572

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
           Y  L+    R       +ML     + G  P+L ++  ++    R  + ++ +N
Sbjct: 573 YGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAIN 626



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 132/320 (41%), Gaps = 13/320 (4%)

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAM--------FENVKPDR 154
           SS   E  F  L   + AGL A    +  L+   + +G+  DA+        F++ +P  
Sbjct: 114 SSHADEAMFDALADARAAGLPASSSAFAALVAAHSSAGRNADAVQAFSRMDEFQS-RPTA 172

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
            V+N ++ A   SG +  A  +   M A      P+  T   LM      G    A +++
Sbjct: 173 FVYNTILKALVDSGVILLALALYNRMVAA--GCAPNRATYNVLMDGLCKQGMAGDALKMF 230

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             +    I    ++YT+ ++     G  + A  +   M  KG +PDEV  +A +      
Sbjct: 231 DEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKV 290

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G+V  AF+ L   ++ G ++G+  YS L+     A+ + +    Y+ M    + P V   
Sbjct: 291 GRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLY 350

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAK 393
             +I    +  ++   +  L  MK  G  P+T  Y ++L V C+  D      +     +
Sbjct: 351 TIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQ 410

Query: 394 EDGVIPNLVMFKCIIGMCSR 413
            + V+ +      I G+C R
Sbjct: 411 NNLVLDSTTQTIMICGLCKR 430



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 160/385 (41%), Gaps = 69/385 (17%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT--- 91
           L   G+I E + LL  M+ KG L  +  Y+A    +CK  + + EAF+   ++ +     
Sbjct: 252 LCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGR-VNEAFQRLVMLQDGGFAL 310

Query: 92  -LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM-FE 148
            L  ++ L+     ++  +  F   + + E  +  D  LYT +I  CA++G++ DA+ F 
Sbjct: 311 GLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFL 370

Query: 149 NVK------PDRVVFNAL---------------------------------ITACG--QS 167
           +V       PD   +N +                                 I  CG  + 
Sbjct: 371 DVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKR 430

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
           G VD A  +  EM    H  DP  +T  AL+      G+++ AR ++   HK  +   P 
Sbjct: 431 GLVDEAMQIFDEMGE--HGCDPTVMTYNALIDGFYREGRLEEARMLF---HKMEMGNNPS 485

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKG----------------VIPDEVFLSALIDFA 271
           ++       +Q  D E    +  DM + G                V+PD V  + LI+  
Sbjct: 486 LFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGL 545

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
             A  ++ A  + +E + +GIS   I+Y +L+     A     A+ L++++      P++
Sbjct: 546 CKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSL 605

Query: 332 STMNALITALCDGDQLPKTMEVLSD 356
           S  N+++ +LC   +L + + +  D
Sbjct: 606 SIYNSMMRSLCRMKKLSQAINLWLD 630



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/448 (21%), Positives = 176/448 (39%), Gaps = 34/448 (7%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           ++  A++   R  +    PT   +N ++     S     A  +   +  AG   +   Y 
Sbjct: 152 RNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYN 211

Query: 132 TLITTCAKSGKV-DA--MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
            L+    K G   DA  MF+      + P+  ++  L+++   +G +D A  +L  M  +
Sbjct: 212 VLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDK 271

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
                PD +T  A +      G+V+ A +   M+         + Y+  I+   Q   ++
Sbjct: 272 --GCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFD 329

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
                Y  M ++ + PD V  + +I     AG++E A   L   K +G       Y++++
Sbjct: 330 EGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVL 389

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
               +  + ++A  L   M    L    +T   +I  LC    + + M++  +M   G  
Sbjct: 390 KVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCD 449

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 423
           P  +TY+ L+    R+  +E   ML  +  E G  P+L + +  +G              
Sbjct: 450 PTVMTYNALIDGFYREGRLEEARMLFHKM-EMGNNPSLFL-RLTLGA------------N 495

Query: 424 HVLSFNSGRPQIENKWTS----LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRE 479
            V    S R  + +   S     A  + R  I +G +P V   + ++  L    N D   
Sbjct: 496 QVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAV 555

Query: 480 RLVENL---GVSADALKRSNLCSLIDGF 504
           RL + L   G+S D +      +LIDG 
Sbjct: 556 RLFKELQLKGISPDEITYG---TLIDGL 580


>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 849

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 125/566 (22%), Positives = 222/566 (39%), Gaps = 115/566 (20%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           LH+Y    R G+    I++ E M+  GL                                
Sbjct: 244 LHAY---ARTGKYKRAIEIFEKMKETGL-------------------------------- 268

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE---AGLKADCKLYTTLITTCAKSGKVDA 145
           +PTL T+N+++ V    K       +L L+ E    GL+ D    TT+I+ C + G +D 
Sbjct: 269 DPTLVTYNVMLDVYG--KMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDE 326

Query: 146 ---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
               F+++K     P    +N+++   G++G    A ++L EM  E +  +PD IT   L
Sbjct: 327 ARRFFDDLKLNGYKPGTATYNSMLQVFGKAGVYTEALNILKEM--EDNNCEPDAITYNEL 384

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD------- 250
           + A   AG  D    V   +    +      YT  IN   + GD + A  V+        
Sbjct: 385 VAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGC 444

Query: 251 ----------------------------DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
                                       DM   G  PD +  + ++   G  GK +   +
Sbjct: 445 VPNVCTYNNVLVLLGKRSRSEDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQ 504

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +L+E KN G      ++++L+ A     +     ++Y  M +    P ++T NAL+ AL 
Sbjct: 505 VLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKMYGEMVAAGFTPCITTYNALLNALA 564

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPNL 401
                     V+ DM+  G  PN  +YS+LL    +  +V  GL  +     DG V P+ 
Sbjct: 565 RRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVR-GLEKVEMEIYDGHVFPSW 623

Query: 402 VMFKCIIGMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAI--------- 451
           ++ + ++    + R  K      H L  N  +  +    + L++ V  + +         
Sbjct: 624 MLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDV 683

Query: 452 --VAGTIPT-------VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 502
             V+G  P        +++ ++V  C    + A+   + ++N G+S D +  +   ++I 
Sbjct: 684 IHVSGLQPNLVTYNSLIDLYARVGDC----WKAEEMLKDIQNSGISPDVVSYN---TVIK 736

Query: 503 GFGEYD--PRAFSLLEEAASFGIVPC 526
           GF +      A  +L E  + G+ PC
Sbjct: 737 GFCKKGLVQEAIRILSEMTANGVQPC 762



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 142/321 (44%), Gaps = 18/321 (5%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGA 169
           V+E  L  D K  TT++   A++GK      +FE +K     P  V +N ++   G+ G 
Sbjct: 230 VEEYSL--DVKACTTVLHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMG- 286

Query: 170 VDRAFDVLAEMNAEVHP--VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
             RA+ ++ E+  E+    ++ D  T   ++ AC   G +D AR  +  +     K    
Sbjct: 287 --RAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTA 344

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y   +    + G +  A ++  +M      PD +  + L+     AG  +    ++   
Sbjct: 345 TYNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTM 404

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
            ++G+    I+Y++++ A   A +  KALE++  MK +   P V T N ++  L    + 
Sbjct: 405 ASKGVMPNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRS 464

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
              +++L DMK  G  P+ IT++ +L  C  K   +    +L + K  G  P+   F  +
Sbjct: 465 EDMIKILCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTL 524

Query: 408 I---GMCSRRYEKARTLNEHV 425
           I   G C    + A+   E V
Sbjct: 525 ISAYGRCGSEVDVAKMYGEMV 545



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 159/390 (40%), Gaps = 63/390 (16%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P   T+  +++    + D++ A +V   ++E G   +   Y  ++    K  + + M + 
Sbjct: 411 PNAITYTTVINAYGKAGDADKALEVFGQMKELGCVPNVCTYNNVLVLLGKRSRSEDMIKI 470

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                     PDR+ +N ++  CG+ G       VL EM       +PD  T   L+ A 
Sbjct: 471 LCDMKLNGCPPDRITWNTMLAVCGEKGKQKFVSQVLREMKN--CGFEPDKETFNTLISAY 528

Query: 202 ANAG-QVDRAREVYKMIHKYNIKGTP--EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              G +VD A+   +M+       TP    Y   +N  ++ G+W+ A SV  DM KKG  
Sbjct: 529 GRCGSEVDVAKMYGEMVAA---GFTPCITTYNALLNALARRGNWKAAESVVLDMRKKGFK 585

Query: 259 PDEVFLSALIDFAGHAGKV--------------------------------------EAA 280
           P+E   S L+     AG V                                      E A
Sbjct: 586 PNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERA 645

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
           F  LQ   N G  + ++  +S++      +  +KA E+ + +    L+P + T N+LI  
Sbjct: 646 FHQLQ---NNGYKLDMVVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDL 702

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
                   K  E+L D+++ G+ P+ ++Y+ ++    +K  V+  + +LS+   +GV P 
Sbjct: 703 YARVGDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPC 762

Query: 401 LVMFKCII------GMCSRRYEKARTLNEH 424
            + F   +      G+ +   E  R + EH
Sbjct: 763 PITFNTFMSCYAGNGLFAEADEVIRYMIEH 792



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 71/327 (21%), Positives = 131/327 (40%), Gaps = 45/327 (13%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDAM 146
           P   T+N +++VC      +   QVLR ++  G + D + + TLI+   + G    V  M
Sbjct: 481 PDRITWNTMLAVCGEKGKQKFVSQVLREMKNCGFEPDKETFNTLISAYGRCGSEVDVAKM 540

Query: 147 FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +  +      P    +NAL+ A  + G    A  V+ +M  +     P+  +   L+   
Sbjct: 541 YGEMVAAGFTPCITTYNALLNALARRGNWKAAESVVLDMRKK--GFKPNETSYSLLLHCY 598

Query: 202 ANAGQVDRAREVYKMIHKYNI--------------------KGTPEVY-----------T 230
           + AG V    +V   I+  ++                    KG    +            
Sbjct: 599 SKAGNVRGLEKVEMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDM 658

Query: 231 IAINCC----SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
           + IN       +    E A  + D +   G+ P+ V  ++LID     G    A E+L++
Sbjct: 659 VVINSMLSMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKD 718

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            +N GIS  ++SY++++         Q+A+ +   M +  ++P   T N  ++       
Sbjct: 719 IQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGNGL 778

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILL 373
             +  EV+  M   G  PN +TY I++
Sbjct: 779 FAEADEVIRYMIEHGCMPNELTYKIVI 805



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/284 (20%), Positives = 123/284 (43%), Gaps = 16/284 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P ++T+N L++  A   + + A  V+  +++ G K +   Y+ L+   +K+G V  + + 
Sbjct: 551 PCITTYNALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKV 610

Query: 149 -------NVKPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                  +V P  ++   L+     C Q   ++RAF  L     ++     D + I +++
Sbjct: 611 EMEIYDGHVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKL-----DMVVINSML 665

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                  ++++A E+  +IH   ++     Y   I+  ++ GD   A  +  D+   G+ 
Sbjct: 666 SMFVRNQKLEKAHEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGIS 725

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD V  + +I      G V+ A  IL E    G+    I++++ M   +    + +A E+
Sbjct: 726 PDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGNGLFAEADEV 785

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
             +M      P   T   +I       +  + M+ +S +K + +
Sbjct: 786 IRYMIEHGCMPNELTYKIVIDGYIKAKKHKEAMDFVSKIKEIDI 829



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/275 (21%), Positives = 112/275 (40%), Gaps = 19/275 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQKAIKEAFRFFKL 86
           N L R+G       ++ DM +KG    +  Y      +++  NV   +K   E +     
Sbjct: 561 NALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDGHVF 620

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
                L T  +    C   K  E AF  L   Q  G K D  +  ++++   ++ K++  
Sbjct: 621 PSWMLLRTLVLTNYKCRQLKGMERAFHQL---QNNGYKLDMVVINSMLSMFVRNQKLEKA 677

Query: 147 FE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            E         ++P+ V +N+LI    + G   +A ++L ++      + PD ++   ++
Sbjct: 678 HEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNS--GISPDVVSYNTVI 735

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           K     G V  A  +   +    ++  P  +   ++C +  G +  A  V   M + G +
Sbjct: 736 KGFCKKGLVQEAIRILSEMTANGVQPCPITFNTFMSCYAGNGLFAEADEVIRYMIEHGCM 795

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           P+E+    +ID    A K + A + + + K   IS
Sbjct: 796 PNELTYKIVIDGYIKAKKHKEAMDFVSKIKEIDIS 830



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/175 (18%), Positives = 81/175 (46%), Gaps = 5/175 (2%)

Query: 239 TGDWEFACSVYD----DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
           +G+WE A  +++    +   + +  D+  +  ++   G   +   A ++      +  S+
Sbjct: 176 SGNWERAFLLFEWVWLNFGSENMKVDDQSVEFMVKMLGRESQYSIASKLFDIIPVEEYSL 235

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD-GDQLPKTMEV 353
            + + ++++ A +    +++A+E++E MK   L PT+ T N ++      G      +E+
Sbjct: 236 DVKACTTVLHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILEL 295

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           L +M+S GL  +  T + ++ AC R+  ++         K +G  P    +  ++
Sbjct: 296 LDEMRSKGLEFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYNSML 350



 Score = 46.6 bits (109), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 45/255 (17%), Positives = 96/255 (37%), Gaps = 40/255 (15%)

Query: 194 IGALMKACANAGQVDRAREVYKMIH----KYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           I  L+K    +G  +RA  +++ +       N+K   +     +    +   +  A  ++
Sbjct: 166 ITGLLKGLDLSGNWERAFLLFEWVWLNFGSENMKVDDQSVEFMVKMLGRESQYSIASKLF 225

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN- 308
           D +  +    D    + ++      GK + A EI ++ K  G+   +++Y+ ++      
Sbjct: 226 DIIPVEEYSLDVKACTTVLHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKM 285

Query: 309 AKNWQKALELYEHMKSIKL-----------------------------------KPTVST 333
            + W   LEL + M+S  L                                   KP  +T
Sbjct: 286 GRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTAT 345

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            N+++          + + +L +M+     P+ ITY+ L+ A  R    + G  ++    
Sbjct: 346 YNSMLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMA 405

Query: 394 EDGVIPNLVMFKCII 408
             GV+PN + +  +I
Sbjct: 406 SKGVMPNAITYTTVI 420


>gi|449525305|ref|XP_004169658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29290-like [Cucumis sativus]
          Length = 600

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 166/380 (43%), Gaps = 31/380 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L R+ ++   ++LL  M+  GLL      ++    + +++    +  R F+ +    LST
Sbjct: 159 LSRKNKVRSALELLRSMQLAGLLPSLHALNSLLACLLRNE-LFADGLRIFEFMKLNELST 217

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDR 154
            +    V  +  ++ G    L + +    +  C L               A F     D 
Sbjct: 218 GHTYSLVLKAVANAHGFLSALEMFK--AWEHQCVL---------------AQF-----DA 255

Query: 155 VVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           +V+N +I+ CG+       +R + ++     E +      IT   L+       Q + A 
Sbjct: 256 IVYNTMISICGKDNNWVEAERTWRLM-----EKNGCGATRITYSLLVSTFVRCNQNELAI 310

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           + Y  + + + K   +     I   S+ G W+FA  V+ DM K G+ P+ V  +ALI+  
Sbjct: 311 DTYVKMVQNSFKPGNDTMQAIIGASSKEGKWDFALRVFQDMLKCGLQPNSVSFNALINAL 370

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
           G A +V  AF +    K+ G S  + ++++L+GA   A  +  A+ L+E +K  K++  +
Sbjct: 371 GKAKEVTLAFSVYNVMKSMGHSPDVYTWNALLGALYKANRYSDAIHLFEFVKREKVQLNI 430

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
              N ++ +        + +++L +M+  GL  +T +Y+I++ ACE     E+ L +  +
Sbjct: 431 HIYNTILMSCSKLGLWERAVQILWEMEVSGLSISTSSYNIVMTACEMARKPEIALQVYER 490

Query: 392 AKEDGVIPNLVMFKCIIGMC 411
                + P+      +I  C
Sbjct: 491 MVHQKLTPDTFTHLSLIRCC 510



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 2/223 (0%)

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYD 250
           T   ++KA ANA     A E++K      +    +  VY   I+ C +  +W  A   + 
Sbjct: 220 TYSLVLKAVANAHGFLSALEMFKAWEHQCVLAQFDAIVYNTMISICGKDNNWVEAERTWR 279

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            M K G     +  S L+       + E A +   +        G  +  +++GA S   
Sbjct: 280 LMEKNGCGATRITYSLLVSTFVRCNQNELAIDTYVKMVQNSFKPGNDTMQAIIGASSKEG 339

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            W  AL +++ M    L+P   + NALI AL    ++     V + MKS+G  P+  T++
Sbjct: 340 KWDFALRVFQDMLKCGLQPNSVSFNALINALGKAKEVTLAFSVYNVMKSMGHSPDVYTWN 399

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            LL A  + +     + L    K + V  N+ ++  I+  CS+
Sbjct: 400 ALLGALYKANRYSDAIHLFEFVKREKVQLNIHIYNTILMSCSK 442



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 46/212 (21%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DA--M 146
           P   +FN L++    +K+   AF V  +++  G   D   +  L+    K+ +  DA  +
Sbjct: 358 PNSVSFNALINALGKAKEVTLAFSVYNVMKSMGHSPDVYTWNALLGALYKANRYSDAIHL 417

Query: 147 FENVKPDRV-----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           FE VK ++V     ++N ++ +C + G  +RA  +L EM  EV  +     +   +M AC
Sbjct: 418 FEFVKREKVQLNIHIYNTILMSCSKLGLWERAVQILWEM--EVSGLSISTSSYNIVMTAC 475

Query: 202 ANAGQVDRAREVY-KMIHKYNIKGTPEVYT--IAINCCSQTGDWE--------------- 243
             A + + A +VY +M+H+   K TP+ +T    I CC     W+               
Sbjct: 476 EMARKPEIALQVYERMVHQ---KLTPDTFTHLSLIRCCIWGSLWDEVELLLNKSAPDVSV 532

Query: 244 ---------------FACSVYDDMTKKGVIPD 260
                           A  +Y  M + G+ PD
Sbjct: 533 YNVVIQGMCLRGKSDLAKKLYTKMRENGIQPD 564


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 144/326 (44%), Gaps = 23/326 (7%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMSVCASSKDSEGAFQVLR 116
           F+ C+         ++FKLV              +L  FN+LM       D   A  V  
Sbjct: 107 FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 166

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG 168
            + + GL+     Y TL+    + G +D  F          V+PD   ++ LI    +  
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKEN 226

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +D A  +  EM   V  + P+ +T   L+      G+VD A E+YK +   ++      
Sbjct: 227 KMDDANKLFDEM--LVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLIT 284

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   I    + GD + A  + D+M+ KG+ PD++  + LID     G ++ AFE  +   
Sbjct: 285 YNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMI 344

Query: 289 NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
            + I +  ++Y++L+ G C   ++   A ++   M S+ LKP   T   +I   C    +
Sbjct: 345 QENIRLDDVAYTALISGLCQEGRS-VDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDV 403

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILL 373
            K  ++L +M+  G  P+ +TY++L+
Sbjct: 404 WKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 135/299 (45%), Gaps = 10/299 (3%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKV---DAMFENV-----KPDRVVFNALITACGQSGA 169
           + E G  A    +  L+    K G +    ++F+ +     +P  V +N L+    + G 
Sbjct: 133 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGD 192

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D  F + + M A    V PD  T   L+       ++D A +++  +    +      +
Sbjct: 193 LDEGFRLKSAMLAS--GVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTF 250

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           T  I+   + G  + A  +Y  M  + ++PD +  + LI      G ++ A +++ E   
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSM 310

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           +G+    I+Y++L+  C    +   A E  + M    ++       ALI+ LC   +   
Sbjct: 311 KGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 370

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             ++L +M S+GL P+  TY++++    +K DV  G  LL + + DG +P++V +  ++
Sbjct: 371 AEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLM 429



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 134/343 (39%), Gaps = 24/343 (6%)

Query: 81  FRFFKLVPNPTLSTF--------NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           F FF  + +P  STF         M+  +C     SE    +  +V   G  +   ++  
Sbjct: 1   FSFFTWLSSPANSTFRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAA 60

Query: 133 LITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDV--LAEMNAEVHPVDPD 190
           ++ T              + D  VF+ LIT   +SG +  A +   L   N    P D  
Sbjct: 61  ILETKGTQ----------RSDIYVFSGLITGYLESGFLRDAIECYRLTRENKLCVPFDTC 110

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
              +  LMK              Y+ I +     +   + I ++   + GD   A SV+D
Sbjct: 111 RKVLEHLMKL----KYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 166

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            +TK G+ P  V  + L++     G ++  F +       G+   + +YS L+       
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKEN 226

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
               A +L++ M    L P   T   LI   C   ++   ME+   M S  L P+ ITY+
Sbjct: 227 KMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYN 286

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            L+    +K D++    L+ +    G+ P+ + +  +I  C +
Sbjct: 287 TLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCK 329



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 104/257 (40%), Gaps = 23/257 (8%)

Query: 31  SYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           SYN L    IR G + E   L   M   G+      Y      +CK  K + +A + F  
Sbjct: 179 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENK-MDDANKLFDE 237

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                LVPN    TF  L+     +   + A ++ + +    L  D   Y TLI    K 
Sbjct: 238 MLVKALVPNGV--TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKK 295

Query: 141 GK-------VDAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G        +D M  + ++PD++ +  LI  C + G +D AF+    M  E   +  D +
Sbjct: 296 GDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQE--NIRLDDV 353

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              AL+      G+   A ++ + +    +K     YT+ IN   + GD      +  +M
Sbjct: 354 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEM 413

Query: 253 TKKGVIPDEVFLSALID 269
            + G +P  V  + L++
Sbjct: 414 QRDGHVPSVVTYNVLMN 430


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 155/338 (45%), Gaps = 16/338 (4%)

Query: 85  KLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
           KL  +P+L TF+ L+  +C   + SE A      + +  + A    +TTL+    + G+V
Sbjct: 139 KLGFHPSLVTFSTLLHGLCVEDRVSE-ALHFFHQICKPNVIA----FTTLMNGLCREGRV 193

Query: 144 -------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                  D M E+ ++P+++ +  ++    + G    A ++L +M  EV  + P+ +   
Sbjct: 194 VEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME-EVSRIKPNVVIYS 252

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           A++      G+   A+ ++  + +  I      Y   IN    +G W  A  +  +M ++
Sbjct: 253 AIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFER 312

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + PD V  S LI+     GK   A E+  E   +GI    I+Y+S++   S       A
Sbjct: 313 KMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAA 372

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             ++  M +    P V T + LI   C   ++   M++L +M   GL  NTITY+ L+  
Sbjct: 373 ERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHG 432

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
             +  ++   L LL +    GV PN+V    ++ G+C+
Sbjct: 433 FCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCN 470



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 104/462 (22%), Positives = 186/462 (40%), Gaps = 78/462 (16%)

Query: 25  VSEQLHSY---------------NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN 69
           VSE LH +               N L R+GR+ E + LL+ M   GL      Y      
Sbjct: 162 VSEALHFFHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDG 221

Query: 70  VCKSQKAI------KEAFRFFKLVPN---------------------------------P 90
           +CK    +      ++     ++ PN                                 P
Sbjct: 222 MCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISP 281

Query: 91  TLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
            L T+N M+   C+S + SE A ++LR + E  +  D   ++ LI    K GK       
Sbjct: 282 NLFTYNCMINGFCSSGRWSE-AQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEEL 340

Query: 144 --DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             + +   + P+ + +N++I    +   +D A  +   M  +     PD IT   L+   
Sbjct: 341 YNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATK--GCSPDVITFSILIDGY 398

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             A +VD   ++   + +  +      YT  I+   Q G+   A  +  +M   GV P+ 
Sbjct: 399 CGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNV 458

Query: 262 VFLSALIDFAGHAGKVEAA---FEILQEAKN--------QGISVGIISYSSLMGACSNAK 310
           V  + L+D   + GK++ A   F+++Q++K           +   + +Y+ L+    N  
Sbjct: 459 VTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEG 518

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
            + +A ELYE M    L P   T N++I  LC   +L +  ++   M S G  P+ +T++
Sbjct: 519 KFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFT 578

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            L+    +   V  GL +  +    G++ N + ++ +I G C
Sbjct: 579 TLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFC 620



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 153/344 (44%), Gaps = 24/344 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L+++G+  E  +L  +M  +G++     Y++      K Q  +  A R F L+     
Sbjct: 326 NALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSK-QNRLDAAERMFYLMATKGC 384

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           +P + TF++L+     +K  +   ++L  +   GL A+   YTTLI    + G ++A  +
Sbjct: 385 SPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALD 444

Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE------VHP---VDPDH 191
                    V P+ V  N L+     +G +  A ++   M          HP   V+PD 
Sbjct: 445 LLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDV 504

Query: 192 ITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
            T   L+    N G+   A E+Y+ M H+  +  T    ++    C Q+   + A  ++D
Sbjct: 505 QTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQS-RLDEATQMFD 563

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            M  KG  PD V  + LI+     G+V    E+  E   +GI    I+Y +L+       
Sbjct: 564 SMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVG 623

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
           N   AL++++ M S  + P   T+  ++T L   ++L + ++ L
Sbjct: 624 NINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVQCL 667



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 169/387 (43%), Gaps = 32/387 (8%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           +S  L +YN +I      GR SE   LL +M ERK  +  D V  +   N    +    E
Sbjct: 279 ISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERK--MSPDVVTFSVLINALVKEGKFFE 336

Query: 80  AFRFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           A   + +++P    P   T+N ++   +     + A ++  L+   G   D   ++ LI 
Sbjct: 337 AEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILID 396

Query: 136 TCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
               + +VD   +         +  + + +  LI    Q G ++ A D+L EM +    V
Sbjct: 397 GYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISS--GV 454

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK---------GTPEVYTIAINCCSQ 238
            P+ +T   L+    N G++  A E++K++ K  +            P+V T  I  C  
Sbjct: 455 CPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGL 514

Query: 239 TGDWEF--ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
             + +F  A  +Y++M  +G++PD +  +++ID      +++ A ++     ++G S  +
Sbjct: 515 INEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDV 574

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
           +++++L+            LE++  M    +     T   LI   C    +   +++  +
Sbjct: 575 VTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQE 634

Query: 357 MKSLGLCPNTITYSILLVACERKDDVE 383
           M S G+ P+TIT   +L     K++++
Sbjct: 635 MISSGVYPDTITIRNMLTGLWSKEELK 661



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 145/375 (38%), Gaps = 29/375 (7%)

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +D A D+   M     P+ P  I    L+       + D    +++ +    I      
Sbjct: 56  GLDDAIDLFGYM-VRSRPL-PCVIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYS 113

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           +TI I C        FA S +  +TK G  P  V  S L+       +V  A        
Sbjct: 114 FTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFH--- 170

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            Q     +I++++LM          +A+ L + M    L+P   T   ++  +C      
Sbjct: 171 -QICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTV 229

Query: 349 KTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
             + +L  M+ +  + PN + YS ++    +         L S+ +E G+ PNL  + C+
Sbjct: 230 SALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCM 289

Query: 408 I-GMCSR-RYEKA---------RTLNEHVLSFNSGRPQI--ENKWTSLALMVYREAIVAG 454
           I G CS  R+ +A         R ++  V++F+     +  E K+   A  +Y E +  G
Sbjct: 290 INGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFE-AEELYNEMLPRG 348

Query: 455 TIPTVEVVSKVLGCLQLPYNADIRER---LVENLGVSADALKRSNLCSLIDGF--GEYDP 509
            IP     + ++         D  ER   L+   G S D +  S    LIDG+   +   
Sbjct: 349 IIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFS---ILIDGYCGAKRVD 405

Query: 510 RAFSLLEEAASFGIV 524
               LL E +  G+V
Sbjct: 406 DGMKLLHEMSRRGLV 420


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 168/386 (43%), Gaps = 35/386 (9%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           G+  +  +++ +M  KG +  D  Y      +C + K  K    F ++  N   P++ T+
Sbjct: 432 GKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTY 491

Query: 96  NMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCK----LYTTLITTCAKSGKV-DA---- 145
            +L+ S C +     G  Q  R   +  L+ +C      YT+LI    K+ KV DA    
Sbjct: 492 TILIDSFCKA-----GLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLF 546

Query: 146 ---MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-------------- 188
              + E  KP+ V + ALI    ++G +D+A  + A M  ++   D              
Sbjct: 547 EMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCET 606

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+ IT GAL+     A +V+ A E+   +     +    VY   I+   +TG  E A  V
Sbjct: 607 PNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEV 666

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +  M+++G  P+    S+LI+      +++   ++L +      +  ++ Y+ ++     
Sbjct: 667 FVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCK 726

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
               ++A  L   M+ +   P V T  A+I       ++ + +E+  DM S G  PN IT
Sbjct: 727 VGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFIT 786

Query: 369 YSILLVACERKDDVEVGLMLLSQAKE 394
           Y +L+  C     ++    LL + K+
Sbjct: 787 YRVLINHCCSTGLLDEAHRLLDEMKQ 812



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 156/384 (40%), Gaps = 51/384 (13%)

Query: 76  AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-CKLYTTLI 134
           A++E  R        + +T+N L+ V   +   + AF V R +  +G + D C L     
Sbjct: 189 ALEELGRLKDFGYKASPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAY 248

Query: 135 TTCAKSGKV-DAMF----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
           + C K+G+  DA+     E   PD V +N +++   ++     A D+L  M +      P
Sbjct: 249 SLC-KAGRCGDALSLLEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRS--ISCIP 305

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA---- 245
           + +T   L+  C   GQ+ R + +  M+         E++   ++   ++ D+ +A    
Sbjct: 306 NVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLF 365

Query: 246 ----------------------CS---------------VYDDMTKKGVIPDEVFLSALI 268
                                 CS                Y +M   GV+ ++V +S   
Sbjct: 366 KKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFA 425

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                AGK + AFEI+ E  ++G      +YS ++G   +A   +KA  L+E MK   + 
Sbjct: 426 RCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIV 485

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P+V T   LI + C    + +      +M      PN +TY+ L+ A  +   V     L
Sbjct: 486 PSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKL 545

Query: 389 LSQAKEDGVIPNLVMFKCII-GMC 411
                 +G  PN+V +  +I G C
Sbjct: 546 FEMMLLEGSKPNVVTYTALIDGHC 569



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 153/354 (43%), Gaps = 27/354 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L +  R+ E  +LL+ M   G      VY A     CK+ K       F K+      P 
Sbjct: 619 LCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPN 678

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
           L T++ L++     K  +   +VL  + E     +  +YT +I    K GK +  +    
Sbjct: 679 LYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLML 738

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                   P+ + + A+I   G+ G +++  ++  +M ++     P+ IT   L+  C +
Sbjct: 739 KMEEVGCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSK--GCAPNFITYRVLINHCCS 796

Query: 204 AGQVDRA-REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV--YDDMTKKGVIPD 260
            G +D A R + +M   Y  +       I      +  + EF  S+   D++++   +P 
Sbjct: 797 TGLLDEAHRLLDEMKQTYWPRHISSYRKII-----EGFNREFITSIGLLDELSENESVPV 851

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS---YSSLMGACSNAKNWQKALE 317
           E     LID    AG++E A  +L+E  +   S+ + +   Y+SL+ + S+A    KA E
Sbjct: 852 ESLYRILIDNFIKAGRLEGALNLLEEISSSP-SLAVANKYLYTSLIESLSHASKVDKAFE 910

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITY 369
           LY  M +  + P +ST   LI  L    +  + +++   +  +   +C N + Y
Sbjct: 911 LYASMINKNVVPELSTFVHLIKGLTRVGKWQEALQLSDSICQMVCHVCSNFVNY 964



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 148/365 (40%), Gaps = 47/365 (12%)

Query: 201 CANAGQVDRAREVYKM-IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           C NA   DR    + M I   + +   ++    I  C + G W  A      +   G   
Sbjct: 144 CCNAVNNDRVSHKFLMQIRDDDRELLRKLLNFLIQKCCRNGMWNVALEELGRLKDFGYKA 203

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
                +ALI     A K++ AF + +E  N G  +   +      +   A     AL L 
Sbjct: 204 SPTTYNALIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRCGDALSLL 263

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E  + +   P     N +++ LC+     + M++L  M+S+   PN +TY ILL  C  K
Sbjct: 264 EKEEFV---PDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGK 320

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 439
             +     +LS    +G  PN  MF  ++      Y K+R                    
Sbjct: 321 GQLGRCKRILSMMMTEGCYPNREMFNSLV----HAYCKSRDY------------------ 358

Query: 440 TSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVE-------NLGVS 488
            S A  ++++ I  G  P   + +  +G +    +LP  +D+ E L E       +LGV 
Sbjct: 359 -SYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELP-GSDLLE-LAEKAYSEMLDLGVV 415

Query: 489 ADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSF--KEIPVVVDARKLEIHTA 546
            + +  SN    + G G++D +AF ++ E  S G VP  S   K I  + DA K+E    
Sbjct: 416 LNKVNVSNFARCLCGAGKFD-KAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVE---- 470

Query: 547 KVYLL 551
           K +LL
Sbjct: 471 KAFLL 475



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 87/415 (20%), Positives = 170/415 (40%), Gaps = 47/415 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKS---QKAIKEAFRFFKLVPNP 90
           L + GR  + + LLE  E       D V++ R  + +C++   Q+A+    R   +   P
Sbjct: 250 LCKAGRCGDALSLLEKEE----FVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIP 305

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
            + T+ +L+S C          ++L ++   G   + +++ +L+    KS      ++  
Sbjct: 306 NVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLF 365

Query: 151 K--------PDRVVFNALITACGQSGAV---------DRAFDVLAEMNAEVHPVDPDHIT 193
           K        P  +++N  I +   +  +         ++A+  + ++   ++ V+     
Sbjct: 366 KKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVN----- 420

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
           +    +    AG+ D+A E+   +           Y+  I         E A  ++++M 
Sbjct: 421 VSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMK 480

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           K G++P     + LID    AG ++ A     E      +  +++Y+SL+ A   A+   
Sbjct: 481 KNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVF 540

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS----DMKSLGL------- 362
            A +L+E M     KP V T  ALI   C   Q+ K  ++ +    D++S  +       
Sbjct: 541 DANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLD 600

Query: 363 -----CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
                 PN ITY  L+    + + VE    LL     +G  PN +++  +I G C
Sbjct: 601 DNDCETPNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFC 655


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 176/393 (44%), Gaps = 21/393 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           ++R  R    I L + MERK +      +       C   K   A+    +  KL  +P 
Sbjct: 89  VVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPD 148

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
           + TFN L+  +C   + SE A  +   + E   + +   +TTL+    + G++       
Sbjct: 149 VVTFNTLLHGLCVEDRVSE-ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALL 207

Query: 144 DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M E+ ++P ++ +  ++    + G    A ++L +M  EV  + P+ +   A++ +  
Sbjct: 208 DRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME-EVSHIIPNVVIYSAIIDSLC 266

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYT---IAINCCSQTGDWEFACSVYDDMTKKGVIP 259
             G+   A+ ++  + +  I   P+++T   + +  CS +G W  A  +  +M ++ + P
Sbjct: 267 KDGRHSDAQNLFTEMQEKGI--FPDLFTYNSMIVGFCS-SGRWSDAEQLLQEMLERKISP 323

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  +ALI+     GK   A E+  E   +GI    I+YSS++           A  ++
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M +    P + T N LI   C   ++   ME+L +M   GL  +T TY+ L+      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            D+   L LL +    G+ P++V    ++ G+C
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLC 476



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 177/407 (43%), Gaps = 34/407 (8%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------- 85
           N L R+GRI E + LL+ M   GL      Y      +CK    +  A    +       
Sbjct: 192 NGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVS-ALNLLRKMEEVSH 250

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--- 142
           ++PN  + +  ++ S+C   + S+ A  +   +QE G+  D   Y ++I     SG+   
Sbjct: 251 IIPNVVIYS-AIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSD 308

Query: 143 ----VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
               +  M E  + PD V +NALI A  + G    A ++  EM      + P+ IT  ++
Sbjct: 309 AEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP--RGIIPNTITYSSM 366

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +       ++D A  ++ ++           +   I+        +    +  +MT+ G+
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKAL 316
           + D    + LI      G + AA ++LQE  + G+   I++  +L+ G C N K  + AL
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK-LKDAL 485

Query: 317 ELYEHMKSIK-----------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           E+++ M+  K           ++P V T N LI+ L +  +  +  E+  +M   G+ P+
Sbjct: 486 EMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           TITYS ++    ++  ++    +          PN+V F  +I G C
Sbjct: 546 TITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 157/359 (43%), Gaps = 26/359 (7%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI    ++G+  E  +L ++M  +G++     Y +     CK Q  +  A
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRLDAA 379

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F L+     +P L TFN L+     +K  +   ++L  + E GL AD   Y TLI  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 137 CAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAE----- 183
               G ++A  + ++        PD V  + L+     +G +  A ++   M        
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 184 -VHP---VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
             HP   V+PD  T   L+    N G+   A E+Y+ +    I      Y+  I+   + 
Sbjct: 500 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
              + A  ++D M  K   P+ V  + LI+    AG+V+   E+  E   +GI    I+Y
Sbjct: 560 SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITY 619

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
            +L+       N   AL++++ M S  + P   T+  ++T L   ++L + + +L  ++
Sbjct: 620 ITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 76/372 (20%), Positives = 147/372 (39%), Gaps = 19/372 (5%)

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            ++ A D+ ++M     P+ P  +    LM       + D    +Y+ + +  I+     
Sbjct: 59  GLEDAIDLFSDM-LRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYS 116

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           +TI I C        FA S +  +TK G+ PD V  + L+       +V  A  +  +  
Sbjct: 117 FTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMF 176

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
                  ++++++LM          +A+ L + M    L+PT  T   ++  +C      
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 349 KTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC- 406
             + +L  M+ +  + PN + YS ++ +  +         L ++ +E G+ P+L  +   
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 407 IIGMCSR-RYEKA---------RTLNEHVLSFNSGRPQI--ENKWTSLALMVYREAIVAG 454
           I+G CS  R+  A         R ++  V+++N+       E K+   A  +Y E +  G
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFE-AEELYDEMLPRG 355

Query: 455 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAF 512
            IP     S ++         D  E +   +     +       +LIDG+   +      
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 513 SLLEEAASFGIV 524
            LL E    G+V
Sbjct: 416 ELLHEMTETGLV 427


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 144/326 (44%), Gaps = 23/326 (7%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMSVCASSKDSEGAFQVLR 116
           F+ C+         ++FKLV              +L  FN+LM       D   A  V  
Sbjct: 93  FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 152

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG 168
            + + GL+     Y TL+    + G +D  F          V+PD   ++ LI    +  
Sbjct: 153 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 212

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +D A ++  EM   V  + P+ +T   L+      G+VD A E+YK +   ++      
Sbjct: 213 KMDDANELFDEM--LVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLIT 270

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   I    + GD + A  + D+M+ KG+ PD+   + LID     G ++ AFE  +   
Sbjct: 271 YNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMI 330

Query: 289 NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
            + I +  ++Y++L+ G C   ++   A ++   M S+ LKP   T   +I   C    +
Sbjct: 331 QENIRLDDVAYTALISGLCQEGRS-VDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDV 389

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILL 373
            K  ++L +M+  G  P+ +TY++L+
Sbjct: 390 WKGSKLLKEMQRDGHAPSVVTYNVLM 415



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 108/231 (46%), Gaps = 5/231 (2%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           LM      G +  A+ V+  I K+ ++ +   Y   +N   + GD +    +   M   G
Sbjct: 134 LMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASG 193

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKA 315
           V PD    S LI+      K++ A E+  E   +G+    +++++L+ G C N +    A
Sbjct: 194 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRV-DLA 252

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           +E+Y+ M S  L P + T N LI  LC    L +  +++ +M   GL P+  TY+ L+  
Sbjct: 253 MEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDG 312

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS--RRYEKARTLNE 423
           C ++ D++       +  ++ +  + V +  +I G+C   R  +  + L E
Sbjct: 313 CCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLRE 363



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 129/326 (39%), Gaps = 17/326 (5%)

Query: 91  TLSTF-NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           TL ++  M+  +C     SE    +  +V   G  +   ++ T++ T             
Sbjct: 4   TLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFATILETKGTQ--------- 54

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDV--LAEMNAEVHPVDPDHITIGALMKACANAGQV 207
            + D  VF+ LITA  +SG    A +   L   +    P D     +  LMK        
Sbjct: 55  -RSDIYVFSGLITAYLESGFXRDAIECYRLTREHKLWVPFDTCRKVLEHLMKL----KYF 109

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
                 Y+ I +     +   + I ++   + GD   A SV+D +TK G+ P  V  + L
Sbjct: 110 KLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTL 169

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ++     G ++  F +       G+   + +YS L+           A EL++ M    L
Sbjct: 170 MNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGL 229

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P   T   LI   C   ++   ME+   M S  L P+ ITY+ L+    +K D++    
Sbjct: 230 IPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHD 289

Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSR 413
           L+ +    G+ P+   +  +I  C +
Sbjct: 290 LIDEMSMKGLKPDKFTYTTLIDGCCK 315



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 102/257 (39%), Gaps = 23/257 (8%)

Query: 31  SYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           SYN L    IR G + E   L   M   G+      Y      +CK  K + +A   F  
Sbjct: 165 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-MDDANELFDE 223

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                L+PN    TF  L+     +   + A ++ + +    L  D   Y TLI    K 
Sbjct: 224 MLVKGLIPNGV--TFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKK 281

Query: 141 GK-------VDAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G        +D M  + +KPD+  +  LI  C + G +D AF+    M  E   +  D +
Sbjct: 282 GDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQE--NIRLDDV 339

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              AL+      G+   A ++ + +   ++K     YT+ IN   + GD      +  +M
Sbjct: 340 AYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEM 399

Query: 253 TKKGVIPDEVFLSALID 269
            + G  P  V  + L++
Sbjct: 400 QRDGHAPSVVTYNVLMN 416


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/414 (22%), Positives = 181/414 (43%), Gaps = 30/414 (7%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L +QG   + + + ++M  +G++   K+Y     ++C + K I EA +    + +    P
Sbjct: 217 LCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGK-IDEAVQLLGSMKDKGCLP 275

Query: 91  TLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-- 147
              T+N  +S +C   + +E AFQ L ++Q+ G     K Y+ LI    ++ + D  F  
Sbjct: 276 DEVTYNAFLSGLCKVGRVNE-AFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGY 334

Query: 148 ------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  N+ PD V++  +I  C ++G ++ A   L  M  +     PD      ++K  
Sbjct: 335 YKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKK--GFVPDTFCYNTVLKVL 392

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            + G ++RA  +   + + N+       TI I    + G  + A  ++D+M + G  P  
Sbjct: 393 CDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTV 452

Query: 262 VFLSALIDFAGHAGKVEAA---FEILQEAKNQGISVGII-------SYSSLMGACSNAKN 311
           +  +ALID     G++E A   F  ++   N  + + +           SL     +   
Sbjct: 453 MTYNALIDGFYREGRLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQ 512

Query: 312 WQKALELYEHMKSI---KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
             + L+ Y+ ++SI    + P V T N LI  LC    L   + +  +++  G+ P+ IT
Sbjct: 513 SGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEIT 572

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLN 422
           Y  L+    R       +ML     + G  P+L ++  ++    R  + ++ +N
Sbjct: 573 YGTLIDGLLRAHRENDAMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAIN 626



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 132/320 (41%), Gaps = 13/320 (4%)

Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAM--------FENVKPDR 154
           SS   E  F  L   + AGL A    +  L+   + +G+  DA+        F++ +P  
Sbjct: 114 SSHADEAMFDALADARAAGLPASSSAFAALVAAHSSAGRHADAVQAFSRMDEFQS-RPTA 172

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
            V+N ++ A   SG +  A  +   M A      P+  T   LM      G    A +++
Sbjct: 173 FVYNTILKALVDSGVILLALALYNRMVAA--GCAPNRATYNVLMDGLCKQGMAGDALKMF 230

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             +    I    ++YT+ ++     G  + A  +   M  KG +PDEV  +A +      
Sbjct: 231 DEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKV 290

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G+V  AF+ L   ++ G ++G+  YS L+     A+ + +    Y+ M    + P V   
Sbjct: 291 GRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLY 350

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAK 393
             +I    +  ++   +  L  MK  G  P+T  Y ++L V C+  D      +     +
Sbjct: 351 TIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQ 410

Query: 394 EDGVIPNLVMFKCIIGMCSR 413
            + V+ +      I G+C R
Sbjct: 411 NNLVLDSTTQTIMICGLCKR 430



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/385 (22%), Positives = 160/385 (41%), Gaps = 69/385 (17%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT--- 91
           L   G+I E + LL  M+ KG L  +  Y+A    +CK  + + EAF+   ++ +     
Sbjct: 252 LCNAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGR-VNEAFQRLVMLQDGGFAL 310

Query: 92  -LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM-FE 148
            L  ++ L+     ++  +  F   + + E  +  D  LYT +I  CA++G++ DA+ F 
Sbjct: 311 GLKGYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFL 370

Query: 149 NVK------PDRVVFNAL---------------------------------ITACG--QS 167
           +V       PD   +N +                                 I  CG  + 
Sbjct: 371 DVMKKKGFVPDTFCYNTVLKVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKR 430

Query: 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
           G VD A  +  EM    H  DP  +T  AL+      G+++ AR ++   HK  +   P 
Sbjct: 431 GLVDEAMQIFDEMGE--HGCDPTVMTYNALIDGFYREGRLEEARMLF---HKMEMGNNPS 485

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKG----------------VIPDEVFLSALIDFA 271
           ++       +Q  D E    +  DM + G                V+PD V  + LI+  
Sbjct: 486 LFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGL 545

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
             A  ++ A  + +E + +GIS   I+Y +L+     A     A+ L++++      P++
Sbjct: 546 CKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHRENDAMMLFQNILQSGSSPSL 605

Query: 332 STMNALITALCDGDQLPKTMEVLSD 356
           S  N+++ +LC   +L + + +  D
Sbjct: 606 SIYNSMMRSLCRMKKLSQAINLWLD 630



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 98/444 (22%), Positives = 176/444 (39%), Gaps = 26/444 (5%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           +   A++   R  +    PT   +N ++     S     A  +   +  AG   +   Y 
Sbjct: 152 RHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAPNRATYN 211

Query: 132 TLITTCAKSGKV-DA--MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
            L+    K G   DA  MF+      + P+  ++  L+++   +G +D A  +L  M  +
Sbjct: 212 VLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDK 271

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
                PD +T  A +      G+V+ A +   M+         + Y+  I+   Q   ++
Sbjct: 272 --GCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFD 329

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
                Y  M ++ + PD V  + +I     AG++E A   L   K +G       Y++++
Sbjct: 330 EGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVL 389

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
               +  + ++A  L   M    L    +T   +I  LC    + + M++  +M   G  
Sbjct: 390 KVLCDHGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCD 449

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 423
           P  +TY+ L+    R+  +E   ML  +  E G  P+L +   +     R  E  R L  
Sbjct: 450 PTVMTYNALIDGFYREGRLEEARMLFHKM-EMGNNPSLFLRLTLGANQVRDSESLRKLVH 508

Query: 424 HVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVE 483
            +    SG  Q+   +  L     R  I +G +P V   + ++  L    N D   RL +
Sbjct: 509 DMC--QSG--QVLKAYKLL-----RSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFK 559

Query: 484 NL---GVSADALKRSNLCSLIDGF 504
            L   G+S D +      +LIDG 
Sbjct: 560 ELQLKGISPDEITYG---TLIDGL 580


>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
 gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
          Length = 784

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 179/443 (40%), Gaps = 54/443 (12%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V+   ++YN LI    R+    E   + ++M+  G  + DKV      +V    +   
Sbjct: 237 HGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGF-EPDKVTFNSLLDVYGKARRHD 295

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA    + +      P++ T+N L+S        E A  + + ++  G+K D   YTTLI
Sbjct: 296 EAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLI 355

Query: 135 TTCAKSGKVDA-------MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
           +   ++GK+DA       M  N  KP+   +NALI   G  G       V  E  +    
Sbjct: 356 SGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSA--G 413

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             PD +T   L+      G       V+K + K       + Y   I+  S+ G ++ A 
Sbjct: 414 FVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAM 473

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +Y  M + G+ PD    +A++      G+ E A ++  E + +       SYSSL+ A 
Sbjct: 474 QIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAY 533

Query: 307 SNAKNWQKALELYEHMKSIKLKP-----------------------------------TV 331
           +NAK   K   L + + S +++P                                    +
Sbjct: 534 ANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDI 593

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
           + +NA+++       + K  ++LS MK   +  +  TY+ L+    R  D E    +L++
Sbjct: 594 NVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTE 653

Query: 392 AKEDGVIPNLVMFKCIIGMCSRR 414
            K  GV P+   +  +I    R+
Sbjct: 654 IKSSGVRPDRYSYNTVIYAYGRK 676



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 149/356 (41%), Gaps = 13/356 (3%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           + EA       P P    +  L+S  + +     A  V R + ++G++     Y  ++  
Sbjct: 157 LAEASALLDAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHV 216

Query: 137 CAKSGK--------VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
            +K           V +M E+ V PDR  +N LI+ C +      A  V  EM A     
Sbjct: 217 YSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKAS--GF 274

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           +PD +T  +L+     A + D A EV + + +     +   Y   I+   + G  E A +
Sbjct: 275 EPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVA 334

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +  +M  KG+ PD V  + LI     AGK++AA     E    G    + +Y++L+    
Sbjct: 335 LKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHG 394

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
               + + + +++  +S    P + T N L+          +   V  +MK  G  P   
Sbjct: 395 VRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERD 454

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 421
           TY  L+ +  R    ++ + +  +  E G+ P++  +  ++   +R  R+E+A  L
Sbjct: 455 TYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKL 510



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 149/351 (42%), Gaps = 14/351 (3%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R GR  + + +   M   G+      Y+       K     KE       +      P  
Sbjct: 184 RAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDR 243

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK- 151
            T+N L+S C      + A QV   ++ +G + D   + +L+    K+ + D   E ++ 
Sbjct: 244 YTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQE 303

Query: 152 -------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                  P  V +N+LI++  + G +++A  +  EM  EV  + PD +T   L+     A
Sbjct: 304 MERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEM--EVKGMKPDVVTYTTLISGLDRA 361

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G++D A   Y  + +   K     Y   I      G +    +V+D+    G +PD V  
Sbjct: 362 GKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTW 421

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + L+   G  G       + +E K  G      +Y SL+ + S    +  A+++Y+ M  
Sbjct: 422 NTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAMQIYKRMME 481

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             + P VST NA+++AL  G +  +  ++ ++M+     P+  +YS LL A
Sbjct: 482 AGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHA 532



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 172/396 (43%), Gaps = 28/396 (7%)

Query: 35  LIRQGRISECIDLLEDMERKG----------LLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L R G+I   I   ++M R G          L+ M  V   +F        A+ + FR  
Sbjct: 358 LDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGV-RGKF----PEMMAVFDEFRSA 412

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
             VP+  + T+N L++V   +        V + +++AG   +   Y +LI++ ++ G  D
Sbjct: 413 GFVPD--IVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFD 470

Query: 145 --------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                    M   + PD   +NA+++A  + G  ++A  + AEM  E     PD  +  +
Sbjct: 471 LAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEM--EERDCKPDEYSYSS 528

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ A ANA ++D+ + +   I+   I+    +    +   S+  +   A   + ++ +K 
Sbjct: 529 LLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKR 588

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
              D   L+A++   G    V    +IL   K   I++   +Y+SLM   S   + +K  
Sbjct: 589 CSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCE 648

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            +   +KS  ++P   + N +I A     Q+ +   + S+MK  GL P+ +TY+I + + 
Sbjct: 649 NILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSY 708

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
                 E  + L+      G  PN   +  I+ G C
Sbjct: 709 VSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYC 744



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/279 (19%), Positives = 122/279 (43%), Gaps = 10/279 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--- 146
           P +ST+N ++S  A     E A ++   ++E   K D   Y++L+   A + ++D M   
Sbjct: 486 PDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKAL 545

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E ++P   +   L+    +   +  A     E+  +   +D +   + A++   
Sbjct: 546 SDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDIN--VLNAMVSIY 603

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                V +  ++  ++ +  I  +   Y   ++  S+ GD E   ++  ++   GV PD 
Sbjct: 604 GKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDR 663

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + +I   G  G+++ A  +  E K  G+   +++Y+  + +  +   +++A+EL  +
Sbjct: 664 YSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRY 723

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           M +   KP   T N+++   C   +L      +S++  L
Sbjct: 724 MVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLPQL 762


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 172/394 (43%), Gaps = 17/394 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRF 83
           +YN L     R G   E    L+ M  KGLL     Y+     + NV +  +A+    R 
Sbjct: 232 TYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRM 291

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K    P ++T+N++  +           ++L  +  +G   +   + T++  C K G  
Sbjct: 292 KKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGME 351

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D +           V+  R  +N LI+A G+ G+   AF +  EM +      P   T  
Sbjct: 352 DYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISS--GFTPCLTTYN 409

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           AL+   +  G    A+ +   + K   K   + Y++ + C ++ G+     S+  ++   
Sbjct: 410 ALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVG 469

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + P  V L  L+       ++E   +  QE K QG    ++ ++S++   +    + KA
Sbjct: 470 TIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKA 529

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            E+++ +K   L P + T N+L+      ++  +  ++L  +KS  + P+ ++Y+ ++  
Sbjct: 530 TEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVING 589

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
             ++  ++    +LS+   DG+ P +V +  ++G
Sbjct: 590 FCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVG 623



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 129/302 (42%), Gaps = 46/302 (15%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG-AVDR 172
           G + D + YTT++   +++G+ +   +         V P  V +N ++   G+ G +  R
Sbjct: 84  GSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPR 143

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
              +L EM A    V+PD  T   ++ AC   G +D+A                      
Sbjct: 144 IVALLEEMRAA--GVEPDDFTASTVIAACGRDGLLDQA---------------------- 179

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
                         + ++D+  +G +P  V  +AL+   G AG    A  +L+E ++ G 
Sbjct: 180 -------------VAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGC 226

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
               ++Y+ L G  + A  +++A +  + M S  L P   T N ++TA  +  ++ + + 
Sbjct: 227 QPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALA 286

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           +   MK  G  PN  TY+++     +K      L +L +    G  PN V +  ++ +C 
Sbjct: 287 LFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCG 346

Query: 413 RR 414
           +R
Sbjct: 347 KR 348



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 147/363 (40%), Gaps = 16/363 (4%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----VDAMFE-----NVKPDRVVFNA 159
           E A Q+   ++  G+      Y  ++    + G+    + A+ E      V+PD    + 
Sbjct: 106 ERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTAST 165

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
           +I ACG+ G +D+A     ++ A  H   P  +T  AL++    AG    A  V K +  
Sbjct: 166 VIAACGRDGLLDQAVAFFEDLKARGHV--PCVVTYNALLQVFGKAGNYTEALRVLKEMED 223

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
              +     Y       ++ G +E A    D MT KG++P+    + ++    + G+V+ 
Sbjct: 224 SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDE 283

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A  +    K  G    + +Y+ + G       +   LE+ E M      P   T N ++ 
Sbjct: 284 ALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLA 343

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
                        VL+ MKS G+  +  TY+ L+ A  R         +  +    G  P
Sbjct: 344 VCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTP 403

Query: 400 NLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 457
            L  +  ++ + SR+  +  A+++   +L  N  +P  ++   SL L  Y +   A  I 
Sbjct: 404 CLTTYNALLNVLSRQGDWSTAQSIVSKMLK-NGFKPNDQS--YSLLLQCYAKGGNAAGIE 460

Query: 458 TVE 460
           ++E
Sbjct: 461 SIE 463



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/281 (22%), Positives = 130/281 (46%), Gaps = 20/281 (7%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P L+T+N L++V +   D   A  ++  + + G K + + Y+ L+   AK G   A  E+
Sbjct: 403 PCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNA-AGIES 461

Query: 150 VK---------PDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
           ++         P  V+   L+ A   C +   V++AF    E+ A+ +   PD +   ++
Sbjct: 462 IEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQ---EVKAQGY--KPDLVIFNSM 516

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKG 256
           +   A  G   +A E++  I +  +      Y   ++  +++ + WE A  +   +    
Sbjct: 517 LAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWE-AEKILKQLKSSQ 575

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V PD V  + +I+     G ++ A  IL E    G++  +++Y +L+G  ++ + + +A 
Sbjct: 576 VKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAR 635

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           E+  +M    LKP   T   ++ + C   +  +  E LS++
Sbjct: 636 EVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEI 676



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/375 (17%), Positives = 148/375 (39%), Gaps = 44/375 (11%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFR-FFKLVPNPTLSTF 95
           GR+ E + L + M++ G +     Y+  F  + K  +  A+ E      +    P   T+
Sbjct: 279 GRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTW 338

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           N +++VC      +   +VL  ++  G++     Y TLI+   + G     F+       
Sbjct: 339 NTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMIS 398

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEM-----------------------NAE- 183
               P    +NAL+    + G    A  ++++M                       NA  
Sbjct: 399 SGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAG 458

Query: 184 ---------VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
                    V  + P  + +  L+ A     +++   + ++ +     K    ++   + 
Sbjct: 459 IESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLA 518

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
             ++ G +  A  ++D + + G+ PD +  ++L+D    + +   A +IL++ K+  +  
Sbjct: 519 MYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKP 578

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
            ++SY++++         ++A  +   M +  + P V T + L+      +   +  EV+
Sbjct: 579 DVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVV 638

Query: 355 SDMKSLGLCPNTITY 369
           + M    L P  +TY
Sbjct: 639 NYMIHHNLKPMELTY 653


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/416 (22%), Positives = 181/416 (43%), Gaps = 51/416 (12%)

Query: 74  QKAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           +  + EA   F  +  P + TF  LM+ +C   +  E    + R+V++ GL+ +   Y T
Sbjct: 63  EDRVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVED-GLQPNQITYGT 121

Query: 133 LITTCAKSGK-VDAM--------FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           ++    K G  V A+          ++KPD V+++A+I    + G    A ++  EM  +
Sbjct: 122 IVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDK 181

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGD 241
              + PD +T   ++    ++G+   A+ + + +    I  +P+V T +  IN   + GD
Sbjct: 182 --GIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKI--SPDVVTFSGLINALVKEGD 237

Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN-----------Q 290
              A  +  +M   GV P+ V  + L+D    +GK++ A E+ +  +             
Sbjct: 238 LNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFN 297

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G+   + +Y+ L+    N   + +A ELYE M    + P   T +++I  LC   +L + 
Sbjct: 298 GVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEA 357

Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
            ++   M S    PN +T++ L+    +   V+ GL L  +    G++ N + +  +I  
Sbjct: 358 TQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLI-- 415

Query: 411 CSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL 466
             R + K   +N                    +L +++E I +G  P    +  +L
Sbjct: 416 --RGFRKVGNING-------------------SLDIFQEMISSGVYPDTITIRNML 450



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/366 (22%), Positives = 166/366 (45%), Gaps = 27/366 (7%)

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKA 125
           F +  K   A+    +  KL  +PTL TFN L+  +C   + SE     L L  +   K 
Sbjct: 25  FCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEA----LDLFHQM-CKP 79

Query: 126 DCKLYTTLITTCAKSGKV-------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVL 177
           +   +TTL+    + G+V       D M E+ ++P+++ +  ++    + G    A ++L
Sbjct: 80  NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLL 139

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            +M  E+  + PD +   A++      G+   A+ ++  +    I      Y+  IN   
Sbjct: 140 RKME-ELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFC 198

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
            +G W  A  +  +M  + + PD V  S LI+     G + +A ++LQE  + G+   ++
Sbjct: 199 SSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVV 258

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKL-----------KPTVSTMNALITALCDGDQ 346
           + ++L+    ++   + ALE+++ M+   +           +P V T N LI+ L +  +
Sbjct: 259 TCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGK 318

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
             +  E+  +M   G+ P+T+TYS ++    ++  ++    +          PN+V F  
Sbjct: 319 FLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNT 378

Query: 407 II-GMC 411
           +I G C
Sbjct: 379 LITGYC 384



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/406 (21%), Positives = 174/406 (42%), Gaps = 37/406 (9%)

Query: 29  LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L ++N L+     + R+SE +DL   M +  ++    + +     +C+  + ++      
Sbjct: 50  LVTFNTLLHGLCVEDRVSEALDLFHQMCKPNVVTFTTLMNG----LCREGRVVEAVALLD 105

Query: 85  KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKS 140
           ++V +   P   T+  ++       D+  A  +LR ++E + +K D  +Y+ +I    K 
Sbjct: 106 RMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKD 165

Query: 141 GK--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+        ++   + + PD V ++ +I     SG    A  +L EM   V  + PD +
Sbjct: 166 GRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEM--LVRKISPDVV 223

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYD 250
           T   L+ A    G ++ A+++ + +    +   P V T    ++    +G  + A  ++ 
Sbjct: 224 TFSGLINALVKEGDLNSAQDLLQEMISSGV--CPNVVTCNTLLDGLCDSGKLKDALEMFK 281

Query: 251 DMTK-----------KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
            M K            GV PD    + LI    + GK   A E+ +E  ++GI    ++Y
Sbjct: 282 AMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTY 341

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
           SS++          +A ++++ M S    P + T N LIT  C    +   +E+  +M  
Sbjct: 342 SSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGR 401

Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
            G+  N ITY  L+    +  ++   L +  +    GV P+ +  +
Sbjct: 402 RGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIR 447



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 168/384 (43%), Gaps = 25/384 (6%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L R+GR+ E + LL+ M   GL      Y      +CK    +       K+      
Sbjct: 89  NGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHI 148

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            P +  ++ ++           A  +   +Q+ G+  D   Y+ +I     SGK      
Sbjct: 149 KPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQR 208

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              + +   + PD V F+ LI A  + G ++ A D+L EM +    V P+ +T   L+  
Sbjct: 209 LLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISS--GVCPNVVTCNTLLDG 266

Query: 201 CANAGQVDRAREVYKMIHK--YNIKGT-------PEV--YTIAINCCSQTGDWEFACSVY 249
             ++G++  A E++K + K   +I  T       P+V  Y I I+     G +  A  +Y
Sbjct: 267 LCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELY 326

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           ++M  +G++PD V  S++I+      +++ A ++     ++  S  I+++++L+     A
Sbjct: 327 EEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKA 386

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
                 LEL+  M    +     T   LI        +  ++++  +M S G+ P+TIT 
Sbjct: 387 GMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITI 446

Query: 370 SILLVACERKDDVEVGLMLLSQAK 393
             +L     K++++  L +L + +
Sbjct: 447 RNMLTGLWSKEELKKALAMLEELQ 470



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 118/266 (44%), Gaps = 23/266 (8%)

Query: 122 GLKADCKLYTTLI-----TTCAK-------SGKVDAMFENVKPDRVVFNALITACGQSGA 169
           GL+  C +Y+  I      +C+K        GK+  +     P  V FN L+        
Sbjct: 8   GLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKL--GFHPTLVTFNTLLHGLCVEDR 65

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           V  A D+  +M        P+ +T   LM      G+V  A  +   + +  ++     Y
Sbjct: 66  VSEALDLFHQM------CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITY 119

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
              ++   + GD   A ++   M +   I PD V  SA+ID     G+   A  +  E +
Sbjct: 120 GTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQ 179

Query: 289 NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           ++GI   I++YS ++ G CS+ K W +A  L + M   K+ P V T + LI AL     L
Sbjct: 180 DKGIFPDIVTYSCMINGFCSSGK-WSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDL 238

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILL 373
               ++L +M S G+CPN +T + LL
Sbjct: 239 NSAQDLLQEMISSGVCPNVVTCNTLL 264


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 116/517 (22%), Positives = 225/517 (43%), Gaps = 66/517 (12%)

Query: 18  HANYAHDVSEQL---------HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH 64
           H   AH++ E++          ++N+LI    R+G + E   LL  + ++G+     ++ 
Sbjct: 196 HRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGV--SPNLFT 253

Query: 65  ARFFNVCKSQKA-IKEAFRFFKLVP---NPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQ 119
              F     Q+A + EA R    V     P + T+N L+  +C + K  E    + ++V 
Sbjct: 254 VNIFIQGFCQRAMLNEAIRLLDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVN 313

Query: 120 EAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVD 171
           E G + D   Y ++I    K G +        D  F+   PD   + +LI    Q G +D
Sbjct: 314 E-GYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDID 372

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYT 230
           RA +V  E  A    + P+ +    L+K  +  G + +A    K++++ +  G +P+++T
Sbjct: 373 RAINVFNE--AMEKGLKPNLVLCNTLVKGLSQQGLILQA---LKLMNEMSENGCSPDIWT 427

Query: 231 --IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
             + IN   + G    A ++  D   KG +PD    + LID      K++ A EI+    
Sbjct: 428 YNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMW 487

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
           N G+S  +I+Y+S++     A  ++  +  ++ M      P + T N L  + C   ++ 
Sbjct: 488 NHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVE 547

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED----------GVI 398
           + + ++ +M++ GL P+ + +  L+       D++    L  +  E            ++
Sbjct: 548 EALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIM 607

Query: 399 PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNS--------GRPQIENKWTSLALMVYREA 450
            N    K  + M  + + K   + E+  S +S        G  +  N  +  + ++ +  
Sbjct: 608 INAFAGKLNMNMAEKLFNK---MCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVK-- 662

Query: 451 IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV 487
           I  G IP++    +VL CL L      + R+ E +G+
Sbjct: 663 IEKGLIPSLTTFGRVLNCLCL------KRRVHEAVGI 693



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 162/382 (42%), Gaps = 31/382 (8%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           +  K   + +  +I   G  G  +   +VLAE    +     + + IGA M+     G++
Sbjct: 34  DGFKHTLLTYKGMIEKLGFHGEFEAMEEVLAETRMNIDNGLLEGVYIGA-MRNYGRKGKI 92

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             A +V++ +  +N + + + Y   +N   +   ++ A  VY  M  KG++PD    +  
Sbjct: 93  QEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTIR 152

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           +       +  AA  +L    +QG     ++Y +++G      +  +A EL+E M  + +
Sbjct: 153 MKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGI 212

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
            P +   N LI  LC    + ++  +L+ +   G+ PN  T +I +    ++  +   + 
Sbjct: 213 CPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIR 272

Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV 446
           LL      G+ P+++ +  +I G+C + ++      EH L     R  +   +       
Sbjct: 273 LLDGVGR-GLTPDVITYNTLICGLC-KNFKVVEA--EHYL-----RKMVNEGYEPDGFTY 323

Query: 447 YREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF-- 504
              +I+ G           LG +Q   NAD   +++ +          S  CSLI+G   
Sbjct: 324 --NSIIDGYCK--------LGMMQ---NAD---QILRDGAFKGFVPDESTYCSLINGLCQ 367

Query: 505 -GEYDPRAFSLLEEAASFGIVP 525
            G+ D RA ++  EA   G+ P
Sbjct: 368 DGDID-RAINVFNEAMEKGLKP 388



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 154/393 (39%), Gaps = 28/393 (7%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +YN +I    + G +     +L D   KG +  +  Y +    +C+    I  A   F  
Sbjct: 322 TYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGD-IDRAINVFNE 380

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                L PN  L   N L+   +       A +++  + E G   D   Y  +I    K 
Sbjct: 381 AMEKGLKPNLVLC--NTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKI 438

Query: 141 GKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G V        DA+ +   PD   FN LI    +   +D A +++  M    H V PD I
Sbjct: 439 GCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWN--HGVSPDVI 496

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T  +++     AG+ +     +K++ +         Y I      +    E A ++ ++M
Sbjct: 497 TYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEM 556

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKN 311
             KG+ PD V    L+      G ++ A+++ +    Q   S  I +Y+ ++ A +   N
Sbjct: 557 QNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGKLN 616

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
              A +L+  M      P   T   +I   C    +      L      GL P+  T+  
Sbjct: 617 MNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTFGR 676

Query: 372 LL--VACERKDDVEVGLMLLSQAKEDGVIPNLV 402
           +L  +  +R+    VG++ L   K  G++P +V
Sbjct: 677 VLNCLCLKRRVHEAVGIIHLMVHK--GIVPEVV 707


>gi|356572391|ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic-like [Glycine max]
          Length = 811

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 147/332 (44%), Gaps = 60/332 (18%)

Query: 90  PTLSTFNMLMSVC--ASSKD-SEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSG---- 141
           P ++++N+L+  C  A   D ++  ++ L+ ++  G LK D   Y+T+I   A       
Sbjct: 293 PDMTSYNILLKACCVAGRVDLAQDIYRELKHLESVGQLKLDVFTYSTIIKVFADVKLWQM 352

Query: 142 ----KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
               K D +   V  + V +++LI AC  +G V++A  +  EM   +   +P+      +
Sbjct: 353 ALKIKQDMLSAGVSLNIVAWSSLINACAHAGLVEQAIQLFEEM--LLAGCEPNTQCFNII 410

Query: 198 MKACANAGQVDRAREVY------KMI--------------HKYNIKGTPE---------- 227
           + AC  A Q DRA   +      KM+              H +++   P           
Sbjct: 411 LNACVEAYQYDRAFRFFHSWKGKKMLGSSGEGYNSNIGQGHMHDVTSIPNGISNSHILNF 470

Query: 228 -----------VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
                       Y I +  C    D+  A ++  +M   G+ P+++  S LID  G +  
Sbjct: 471 AERFPFTPTTTTYNILLKACGT--DYYHAKALIKEMETVGLSPNQISWSILIDICGASSN 528

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           VE A EIL+   + GI   +I+Y++ +  C  +KN+ +AL LYE MK  +++P   T N 
Sbjct: 529 VEGAIEILKTMGDAGIKPDVIAYTTAIKVCVESKNFMQALTLYEEMKCYQIRPNWVTYNT 588

Query: 337 LITALCDGDQLPKTMEVLS---DMKSLGLCPN 365
           L+ A      L +  + L+   DM+  G  PN
Sbjct: 589 LLKARSKYGFLHEVQQCLAIYQDMRKAGYKPN 620



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/463 (21%), Positives = 190/463 (41%), Gaps = 67/463 (14%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS 93
           RL+    + E ++L+E + R  +   + V  +     C   +    A R+  L+P+  + 
Sbjct: 135 RLVTCSHVEEAVELMEVLARFQISIRELVQPSDIIKRCVLSRNPILAVRYACLLPHAHI- 193

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA------KSGKV--DA 145
            F  ++S     +D   A +     ++     +  +Y   I TC       KS  +  D 
Sbjct: 194 LFCNIISEFGKRRDLVSALKAYEASKKHLNTPNMYIYRATIDTCGLCRDYMKSRYIYEDL 253

Query: 146 MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
           + + + P+  VFN+L+       + D ++ +    N +   + PD  +   L+KAC  AG
Sbjct: 254 LNQKITPNIYVFNSLMNV----NSHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAG 309

Query: 206 QVDRAREVYKMIHKYNIKGTPEV----YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           +VD A+++Y+ +      G  ++    Y+  I   +    W+ A  +  DM   GV  + 
Sbjct: 310 RVDLAQDIYRELKHLESVGQLKLDVFTYSTIIKVFADVKLWQMALKIKQDMLSAGVSLNI 369

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE- 320
           V  S+LI+   HAG VE A ++ +E    G       ++ ++ AC  A  + +A   +  
Sbjct: 370 VAWSSLINACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILNACVEAYQYDRAFRFFHS 429

Query: 321 ---------------------HMKSIKLKPT-------------------VSTMNALITA 340
                                HM  +   P                     +T N L+ A
Sbjct: 430 WKGKKMLGSSGEGYNSNIGQGHMHDVTSIPNGISNSHILNFAERFPFTPTTTTYNILLKA 489

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
              G        ++ +M+++GL PN I++SIL+  C    +VE  + +L    + G+ P+
Sbjct: 490 C--GTDYYHAKALIKEMETVGLSPNQISWSILIDICGASSNVEGAIEILKTMGDAGIKPD 547

Query: 401 LVMFKCIIGMC--SRRYEKARTLNEHVLSFNSGRPQIENKWTS 441
           ++ +   I +C  S+ + +A TL E +  +     QI   W +
Sbjct: 548 VIAYTTAIKVCVESKNFMQALTLYEEMKCY-----QIRPNWVT 585



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 142/344 (41%), Gaps = 28/344 (8%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           P +  FN LM+V  +S D      + + +Q  GLK D   Y  L+  C  +G+VD     
Sbjct: 260 PNIYVFNSLMNV--NSHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDI 317

Query: 145 ----AMFENV---KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
                  E+V   K D   ++ +I           A  +  +M +    V  + +   +L
Sbjct: 318 YRELKHLESVGQLKLDVFTYSTIIKVFADVKLWQMALKIKQDMLSA--GVSLNIVAWSSL 375

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           + ACA+AG V++A ++++ +     +   + + I +N C +   ++ A   +     K +
Sbjct: 376 INACAHAGLVEQAIQLFEEMLLAGCEPNTQCFNIILNACVEAYQYDRAFRFFHSWKGKKM 435

Query: 258 I--PDEVFLSALIDFAGHAGKVEAA------FEILQEAKNQGISVGIISYSSLMGACSNA 309
           +    E + S +    GH   V +         IL  A+    +    +Y+ L+ AC   
Sbjct: 436 LGSSGEGYNSNI--GQGHMHDVTSIPNGISNSHILNFAERFPFTPTTTTYNILLKAC--G 491

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
            ++  A  L + M+++ L P   + + LI        +   +E+L  M   G+ P+ I Y
Sbjct: 492 TDYYHAKALIKEMETVGLSPNQISWSILIDICGASSNVEGAIEILKTMGDAGIKPDVIAY 551

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +  +  C    +    L L  + K   + PN V +  ++   S+
Sbjct: 552 TTAIKVCVESKNFMQALTLYEEMKCYQIRPNWVTYNTLLKARSK 595



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 10/112 (8%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           KA+ +      L PN    ++++L+ +C +S + EGA ++L+ + +AG+K D   YTT I
Sbjct: 498 KALIKEMETVGLSPNQI--SWSILIDICGASSNVEGAIEILKTMGDAGIKPDVIAYTTAI 555

Query: 135 TTCAKSG---KVDAMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLA 178
             C +S    +   ++E      ++P+ V +N L+ A  + G +      LA
Sbjct: 556 KVCVESKNFMQALTLYEEMKCYQIRPNWVTYNTLLKARSKYGFLHEVQQCLA 607


>gi|225445222|ref|XP_002280919.1| PREDICTED: pentatricopeptide repeat-containing protein At5g21222
           [Vitis vinifera]
 gi|297738818|emb|CBI28063.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/421 (23%), Positives = 171/421 (40%), Gaps = 61/421 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
           L RQ R      L+  +E+ GL   D V+     N       +KEA + F+ + +    P
Sbjct: 116 LTRQKRFKSIPSLISKLEKNGL-KPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKP 174

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLV-QEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           T STFN L+    ++   E   ++L L+ QE  +K + + + +LI       ++   +  
Sbjct: 175 TTSTFNTLIKGYGNAGMPEECLKLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNV 234

Query: 150 V--------KPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHP-------------- 186
           V        +PD V +N L  A  Q+G   RA  ++ EM N  V P              
Sbjct: 235 VYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCK 294

Query: 187 ------------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                             V P+ +   +L+K   +    D   E   ++ ++ +K     
Sbjct: 295 EGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVT 354

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           ++  +N  S  G  +    ++DDM K G+ PD    S L      AG+ E A  +L    
Sbjct: 355 FSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMG 414

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
             G+   ++ +++++    +A   + A  +YE M  + + P + T   LI    +  +  
Sbjct: 415 KSGVQPNVVIFTTIISGWCSAGKMEYASRVYEKMCEMGICPNLKTFETLIWGYGEAKEPQ 474

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVA-----------CER-KDDVEVGLMLLSQAKEDG 396
           K  E+L  M+  G+ P  +  +I LVA            +R K+DVE    ++   KED 
Sbjct: 475 KAEELLQIMEQKGVAP--VKSTIQLVADAWHALGLANEAKRIKNDVEEAPKVMISTKEDD 532

Query: 397 V 397
           V
Sbjct: 533 V 533



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 155/348 (44%), Gaps = 24/348 (6%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM-- 146
           PTL T+  L++     K  +    ++  +++ GLK D   +  +I   ++SG V +AM  
Sbjct: 104 PTLITYTTLLAALTRQKRFKSIPSLISKLEKNGLKPDSVFFNAMINAFSESGNVKEAMKI 163

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F  +K     P    FN LI   G +G  +    +L  M+ E + V P+  T  +L++A 
Sbjct: 164 FRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECLKLLDLMSQEEN-VKPNDRTFNSLIRAW 222

Query: 202 ANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
            N     R  E + +++K    G  P+V  Y       +Q G+   A  +  +M    V+
Sbjct: 223 CNK---KRITEAWNVVYKMAASGLQPDVVTYNTLARAYAQNGETSRAEGMILEMQNNRVM 279

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+E     +I+     GK++ A   L   +N G+   ++ ++SL+    +  +     E 
Sbjct: 280 PNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPNLVIFNSLIKGFLDITDTDGVDEA 339

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
              M+   +KP V T + ++ A      + K  E+  DM   G+ P+   +SIL     R
Sbjct: 340 LTLMEEFGVKPDVVTFSTIMNAWSSVGLMDKCQEIFDDMVKAGIEPDIHAFSILAKGYVR 399

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC--------SRRYEK 417
             + E    LL+   + GV PN+V+F  II G C        SR YEK
Sbjct: 400 AGEPEKAESLLTAMGKSGVQPNVVIFTTIISGWCSAGKMEYASRVYEK 447



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 161/386 (41%), Gaps = 64/386 (16%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           LM      G+   A+ ++  + +   + T   YT  +   ++   ++   S+   + K G
Sbjct: 77  LMNILIEKGKPQEAQLIFNSLTEEGHRPTLITYTTLLAALTRQKRFKSIPSLISKLEKNG 136

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD VF +A+I+    +G V+ A +I ++ K++G      ++++L+    NA   ++ L
Sbjct: 137 LKPDSVFFNAMINAFSESGNVKEAMKIFRKMKDRGCKPTTSTFNTLIKGYGNAGMPEECL 196

Query: 317 ELYEHM-KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
           +L + M +   +KP   T N+LI A C+  ++ +   V+  M + GL P+ +TY+ L  A
Sbjct: 197 KLLDLMSQEENVKPNDRTFNSLIRAWCNKKRITEAWNVVYKMAASGLQPDVVTYNTLARA 256

Query: 376 CERKDD-----------------------------------VEVGLMLLSQAKEDGVIPN 400
             +  +                                   ++  L  L + +  GV PN
Sbjct: 257 YAQNGETSRAEGMILEMQNNRVMPNERTCGIIINGYCKEGKMKDALRFLYRMRNYGVHPN 316

Query: 401 LVMFKCIIG-----MCSRRYEKARTLNEH------VLSFNSGRPQIENKWTSLALM---- 445
           LV+F  +I        +   ++A TL E       V++F++    I N W+S+ LM    
Sbjct: 317 LVIFNSLIKGFLDITDTDGVDEALTLMEEFGVKPDVVTFST----IMNAWSSVGLMDKCQ 372

Query: 446 -VYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
            ++ + + AG  P +   S +          +  E L+  +G S          ++I G+
Sbjct: 373 EIFDDMVKAGIEPDIHAFSILAKGYVRAGEPEKAESLLTAMGKSGVQPNVVIFTTIISGW 432

Query: 505 G-----EYDPRAFSLLEEAASFGIVP 525
                 EY  R +   E+    GI P
Sbjct: 433 CSAGKMEYASRVY---EKMCEMGICP 455


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 171/372 (45%), Gaps = 24/372 (6%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQK--AIKEAFRF 83
           +YN LI+      ++ + ++L++ M  KG    DKV Y+     +C+ ++   I+E  + 
Sbjct: 353 TYNCLIKGYCNVHQVDQAMELIDQMPSKGC-SPDKVSYYTVMGLLCRDKRLNEIRELIKK 411

Query: 84  F----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                KL+P+    T+N L+ + +     + A ++L+  ++   K D   Y+ ++    K
Sbjct: 412 MQTDSKLLPDHV--TYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCK 469

Query: 140 SGK-------VDAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
            GK       V  MF +   PD V + +++    + G +D+A  ++ +M    H   P+ 
Sbjct: 470 EGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYK--HHCKPNA 527

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T    +      G+   AR++  M  +         Y++ ++   + G    AC V  +
Sbjct: 528 VTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVRE 587

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M  KG  P+ V ++ L+      GK   A ++L+E  N+G +V ++++++++       +
Sbjct: 588 MIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDD 647

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            + AL L + M      P   T  ALI AL   D++ +  E+   M   GL P+ +TY  
Sbjct: 648 LEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRS 707

Query: 372 LLVACERKDDVE 383
           ++    RK  VE
Sbjct: 708 VIHQYCRKGRVE 719



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 153/353 (43%), Gaps = 22/353 (6%)

Query: 73  SQKAIKEAFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
           SQ+  + A RFF             S + +++ + + +K  +GA ++LRL+    ++   
Sbjct: 222 SQEDERNALRFFYWADRLWRYRHDSSVYLVMLEILSKTKLCQGAKRILRLMTRRRIQLCP 281

Query: 128 KLYTTLITTCAKSGKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
           + +  ++ + +++G++ DAM          V+P+  + N  I        + +A      
Sbjct: 282 EAFGFVMVSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAER 341

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE---VYTIAINC 235
           M   +  + P+ +T   L+K   N  QVD+A E   +I +   KG +P+    YT+    
Sbjct: 342 M--VLIGIAPNVVTYNCLIKGYCNVHQVDQAME---LIDQMPSKGCSPDKVSYYTVMGLL 396

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
           C      E    +    T   ++PD V  ++LI      G  + A EILQEA+     V 
Sbjct: 397 CRDKRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVD 456

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
            + YS+++ A       QKA EL   M S    P V T  +++   C   +L +  +++ 
Sbjct: 457 KVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQ 516

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            M      PN +TY+  L    R         +++ ++E+   PN + +  ++
Sbjct: 517 QMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVV 569



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/331 (20%), Positives = 140/331 (42%), Gaps = 17/331 (5%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R  +L P      F  +M   + +     A +VL L+Q+AG++ +  +  T I       
Sbjct: 275 RRIQLCP----EAFGFVMVSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMGN 330

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           ++              + P+ V +N LI        VD+A +++ +M ++     PD ++
Sbjct: 331 ELKKALRFAERMVLIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSK--GCSPDKVS 388

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYDD 251
              +M       +++  RE+ K + + + K  P+   Y   I   S+ G  + A  +  +
Sbjct: 389 YYTVMGLLCRDKRLNEIRELIKKM-QTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQE 447

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
             K     D+V  SA++      GK++ A E++ E  ++G    +++Y+S++        
Sbjct: 448 AEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGK 507

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +A ++ + M     KP   T    +  LC   +  +  ++++  +     PN ITYS+
Sbjct: 508 LDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSV 567

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
           ++    R+  +     ++ +    G  PN V
Sbjct: 568 VVHGLRREGKLNEACDVVREMIGKGFFPNPV 598



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 64/136 (47%)

Query: 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
           + A  IL+    + I +   ++  +M + S A   + A+++   M+   ++P +S  N  
Sbjct: 263 QGAKRILRLMTRRRIQLCPEAFGFVMVSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTA 322

Query: 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
           I  L  G++L K +     M  +G+ PN +TY+ L+        V+  + L+ Q    G 
Sbjct: 323 IHILVMGNELKKALRFAERMVLIGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGC 382

Query: 398 IPNLVMFKCIIGMCSR 413
            P+ V +  ++G+  R
Sbjct: 383 SPDKVSYYTVMGLLCR 398


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 167/370 (45%), Gaps = 28/370 (7%)

Query: 113 QVLRLVQEAGLKA----DCKLYTTLITTCAKSGKV-------DAMF-ENVKPDRVVFNAL 160
           + LR ++E  L+     D   +  L+   +K+G V       D M  E   PD   +N+L
Sbjct: 283 EALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSL 342

Query: 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220
           I+   + G VD A  VL +M        P+ +T   ++       QV+ A ++  ++   
Sbjct: 343 ISGLCKLGEVDEAVKVLNQMIE--RDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGK 400

Query: 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
            I      Y   I     + +   A  +Y +M  KG  PDE   + LID     GK++ A
Sbjct: 401 GILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEA 460

Query: 281 FEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
             +L+E +  G +  +I+Y++L+ G C N K   +A E+++ M+   +     T N LI 
Sbjct: 461 LNLLKEMEVSGCARNVITYNTLIDGFCKN-KRIAEAEEIFDQMELQGVSRNSVTYNTLID 519

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
            LC  +++ +  +++  M   GL P+  TY+ LL    +  D++    ++     DG  P
Sbjct: 520 GLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEP 579

Query: 400 NLVMFKCII-GMC-SRRYEKARTLNEHV------LSFNSGRPQIE----NKWTSLALMVY 447
           ++V +  +I G+C + R E A  L   +      L+ ++  P I+     K +  A+ ++
Sbjct: 580 DIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLF 639

Query: 448 REAIVAGTIP 457
           RE I     P
Sbjct: 640 REMIEKAEAP 649



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/371 (25%), Positives = 168/371 (45%), Gaps = 21/371 (5%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P +STFN+L+     +     A  ++  +++ GL  D K +TT++    + G +D     
Sbjct: 193 PDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMR- 251

Query: 150 VKPDRV---------VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           VK   V           N L+    + G ++ A   + EM+       PD  T   L+  
Sbjct: 252 VKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLR-EGFFPDKYTFNMLVNG 310

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVI 258
            +  G V  A EV  M+ +      P++YT    I+   + G+ + A  V + M ++   
Sbjct: 311 LSKTGHVKHALEVMDMMLREGFD--PDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCS 368

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+ V  + +I       +VE A ++      +GI   + +Y+SL+     ++N   A+EL
Sbjct: 369 PNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMEL 428

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           Y+ MK+    P   T N LI +LC   +L + + +L +M+  G   N ITY+ L+    +
Sbjct: 429 YKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCK 488

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIE 436
              +     +  Q +  GV  N V +  +I G+C S R E+A  L + ++     RP   
Sbjct: 489 NKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMI-MEGLRP--- 544

Query: 437 NKWTSLALMVY 447
           +K+T  +L+ Y
Sbjct: 545 DKFTYNSLLTY 555



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 163/376 (43%), Gaps = 16/376 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-----N 89
            I +G +   + + E M   G +  +   +      CK  + I+EA RF + +       
Sbjct: 240 FIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGR-IEEALRFIEEMSLREGFF 298

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
           P   TFNML++  + +   + A +V+ ++   G   D   Y +LI+   K G+VD     
Sbjct: 299 PDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKV 358

Query: 146 ---MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
              M E +  P+ V +N +I+   +   V+ A  +   +  +   + PD  T  +L++  
Sbjct: 359 LNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGK--GILPDVCTYNSLIQGL 416

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
             +     A E+YK +           Y + I+     G  + A ++  +M   G   + 
Sbjct: 417 CLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNV 476

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           +  + LID      ++  A EI  + + QG+S   ++Y++L+     ++  ++A +L + 
Sbjct: 477 ITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQ 536

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    L+P   T N+L+T  C    + K  +++  M S G  P+ +TY  L+    +   
Sbjct: 537 MIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGR 596

Query: 382 VEVGLMLLSQAKEDGV 397
           VE    LL   +  G+
Sbjct: 597 VEAATKLLRTIQMKGI 612



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 162/386 (41%), Gaps = 18/386 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIKEAFRFFKLVPN 89
           N L + G +   +++++ M R+G       Y++    +CK     +A+K   +  +   +
Sbjct: 309 NGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCS 368

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAM-- 146
           P   T+N ++S        E A ++  ++   G+  D   Y +LI   C       AM  
Sbjct: 369 PNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMEL 428

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           ++ +K     PD   +N LI +    G +  A ++L EM  EV     + IT   L+   
Sbjct: 429 YKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEM--EVSGCARNVITYNTLIDGF 486

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               ++  A E++  +    +      Y   I+   ++   E A  + D M  +G+ PD+
Sbjct: 487 CKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDK 546

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE- 320
              ++L+ +   AG ++ A +I+Q   + G    I++Y +L+     A   + A +L   
Sbjct: 547 FTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRT 606

Query: 321 -HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CER 378
             MK I L P     N +I AL    +  + + +  +M      P+ +TY I+    C+ 
Sbjct: 607 IQMKGINLTP--HAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQG 664

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMF 404
              +   +  + +  E G +P    F
Sbjct: 665 GGPIGEAVDFVMEMLERGYVPEFSSF 690



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 165/391 (42%), Gaps = 21/391 (5%)

Query: 37  RQGRISECIDLLEDME-RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPT 91
           ++GRI E +  +E+M  R+G    DK       N       +K A     ++     +P 
Sbjct: 277 KEGRIEEALRFIEEMSLREGFFP-DKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPD 335

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
           + T+N L+S      + + A +VL  + E     +   Y T+I+T  K  +V+   +   
Sbjct: 336 IYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLAL 395

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 + PD   +N+LI     S     A ++  EM  +     PD  T   L+ +   
Sbjct: 396 VLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTK--GCHPDEFTYNMLIDSLCF 453

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G++  A  + K +           Y   I+   +      A  ++D M  +GV  + V 
Sbjct: 454 RGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVT 513

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + LID    + +VE A +++ +   +G+     +Y+SL+     A + +KA ++ + M 
Sbjct: 514 YNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMA 573

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLS--DMKSLGLCPNTITYSILLVACERKDD 381
           S   +P + T   LI  LC   ++    ++L    MK + L P+   Y+ ++ A  R+  
Sbjct: 574 SDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPH--AYNPVIQALFRRKR 631

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            +  + L  +  E    P+ V +K +  G+C
Sbjct: 632 SKEAVRLFREMIEKAEAPDAVTYKIVFRGLC 662



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 78/407 (19%), Positives = 157/407 (38%), Gaps = 55/407 (13%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           N KP   +F  ++   G++G  D   D+L EM   +  +D D + +   +++ A+ G  +
Sbjct: 84  NFKPSSSIFKEVLHKLGKAGEFDAMKDILKEMKISLSVIDNDSLLV--FIESYASFGLYN 141

Query: 209 RARE-VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
              + V  M  ++ +      Y   +N        +     + +M  +G+ PD    + L
Sbjct: 142 EILQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNIL 201

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM----- 322
           I     A ++  A  +++E ++ G+     +++++M       N   A+ + E M     
Sbjct: 202 IKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGC 261

Query: 323 ---------------------------KSIKLK----PTVSTMNALITALCDGDQLPKTM 351
                                      + + L+    P   T N L+  L     +   +
Sbjct: 262 VVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHAL 321

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-M 410
           EV+  M   G  P+  TY+ L+    +  +V+  + +L+Q  E    PN V +  II  +
Sbjct: 322 EVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTL 381

Query: 411 CSRRYEKARTLNEHVLSFNSGRPQI-----------ENKWTSLALMVYREAIVAGTIPTV 459
           C     +  T    VL+     P +            ++  ++A+ +Y+E    G  P  
Sbjct: 382 CKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDE 441

Query: 460 EVVSKVLGCLQLPYNADIRE--RLVENLGVSADALKRSNLCSLIDGF 504
              + ++    L +   ++E   L++ + VS  A       +LIDGF
Sbjct: 442 FTYNMLID--SLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGF 486


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 172/394 (43%), Gaps = 17/394 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRF 83
           +YN L     R G   E    L+ M  KGLL     Y+     + NV +  +A+    R 
Sbjct: 323 TYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRM 382

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K    P ++T+N++  +           ++L  +  +G   +   + T++  C K G  
Sbjct: 383 KKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGME 442

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D +           V+  R  +N LI+A G+ G+   AF +  EM +      P   T  
Sbjct: 443 DYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISS--GFTPCLTTYN 500

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           AL+   +  G    A+ +   + K   K   + Y++ + C ++ G+     S+  ++   
Sbjct: 501 ALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVG 560

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + P  V L  L+       ++E   +  QE K QG    ++ ++S++   +    + KA
Sbjct: 561 TIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKA 620

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            E+++ +K   L P + T N+L+      ++  +  ++L  +KS  + P+ ++Y+ ++  
Sbjct: 621 TEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVING 680

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
             ++  ++    +LS+   DG+ P +V +  ++G
Sbjct: 681 FCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVG 714



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 129/302 (42%), Gaps = 46/302 (15%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG-AVDR 172
           G + D + YTT++   +++G+ +   +         V P  V +N ++   G+ G +  R
Sbjct: 175 GSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPR 234

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
              +L EM A    V+PD  T   ++ AC   G +D+A                      
Sbjct: 235 IVALLEEMRAA--GVEPDDFTASTVIAACGRDGLLDQA---------------------- 270

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
                         + ++D+  +G +P  V  +AL+   G AG    A  +L+E ++ G 
Sbjct: 271 -------------VAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGC 317

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
               ++Y+ L G  + A  +++A +  + M S  L P   T N ++TA  +  ++ + + 
Sbjct: 318 QPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALA 377

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           +   MK  G  PN  TY+++     +K      L +L +    G  PN V +  ++ +C 
Sbjct: 378 LFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCG 437

Query: 413 RR 414
           +R
Sbjct: 438 KR 439



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 147/363 (40%), Gaps = 16/363 (4%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----VDAMFE-----NVKPDRVVFNA 159
           E A Q+   ++  G+      Y  ++    + G+    + A+ E      V+PD    + 
Sbjct: 197 ERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTAST 256

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
           +I ACG+ G +D+A     ++ A  H   P  +T  AL++    AG    A  V K +  
Sbjct: 257 VIAACGRDGLLDQAVAFFEDLKARGHV--PCVVTYNALLQVFGKAGNYTEALRVLKEMED 314

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
              +     Y       ++ G +E A    D MT KG++P+    + ++    + G+V+ 
Sbjct: 315 SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDE 374

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A  +    K  G    + +Y+ + G       +   LE+ E M      P   T N ++ 
Sbjct: 375 ALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLA 434

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
                        VL+ MKS G+  +  TY+ L+ A  R         +  +    G  P
Sbjct: 435 VCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTP 494

Query: 400 NLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 457
            L  +  ++ + SR+  +  A+++   +L  N  +P  ++   SL L  Y +   A  I 
Sbjct: 495 CLTTYNALLNVLSRQGDWSTAQSIVSKMLK-NGFKPNDQS--YSLLLQCYAKGGNAAGIE 551

Query: 458 TVE 460
           ++E
Sbjct: 552 SIE 554



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 130/282 (46%), Gaps = 20/282 (7%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L+T+N L++V +   D   A  ++  + + G K + + Y+ L+   AK G   A  E
Sbjct: 493 TPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNA-AGIE 551

Query: 149 NVK---------PDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           +++         P  V+   L+ A   C +   V++AF    E+ A+ +   PD +   +
Sbjct: 552 SIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQ---EVKAQGY--KPDLVIFNS 606

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKK 255
           ++   A  G   +A E++  I +  +      Y   ++  +++ + WE A  +   +   
Sbjct: 607 MLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWE-AEKILKQLKSS 665

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            V PD V  + +I+     G ++ A  IL E    G++  +++Y +L+G  ++ + + +A
Sbjct: 666 QVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEA 725

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
            E+  +M    LKP   T   ++ + C   +  +  E LS++
Sbjct: 726 REVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEI 767



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 66/375 (17%), Positives = 148/375 (39%), Gaps = 44/375 (11%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFR-FFKLVPNPTLSTF 95
           GR+ E + L + M++ G +     Y+  F  + K  +  A+ E      +    P   T+
Sbjct: 370 GRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTW 429

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           N +++VC      +   +VL  ++  G++     Y TLI+   + G     F+       
Sbjct: 430 NTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMIS 489

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEM-----------------------NAE- 183
               P    +NAL+    + G    A  ++++M                       NA  
Sbjct: 490 SGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAG 549

Query: 184 ---------VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
                    V  + P  + +  L+ A     +++   + ++ +     K    ++   + 
Sbjct: 550 IESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLA 609

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
             ++ G +  A  ++D + + G+ PD +  ++L+D    + +   A +IL++ K+  +  
Sbjct: 610 MYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKP 669

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
            ++SY++++         ++A  +   M +  + P V T + L+      +   +  EV+
Sbjct: 670 DVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVV 729

Query: 355 SDMKSLGLCPNTITY 369
           + M    L P  +TY
Sbjct: 730 NYMIHHNLKPMELTY 744


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 144/326 (44%), Gaps = 23/326 (7%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMSVCASSKDSEGAFQVLR 116
           F+ C+         ++FKLV              +L  FN+LM       D   A  V  
Sbjct: 82  FDTCRKVLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 141

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG 168
            + + GL+     Y TL+    + G +D  F          V+PD   ++ LI    +  
Sbjct: 142 AITKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 201

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +D A ++  EM   V  + P+ +T   L+      G+VD A E+YK +   ++      
Sbjct: 202 KMDDADELFDEM--LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLIT 259

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   I    + GD + A  + DDM++KG+ PD++  + LID     G + +AFE  +   
Sbjct: 260 YNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLI 319

Query: 289 NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
            + I +  + Y++L+ G C   ++   A ++   M S+ L P   T   +I   C    +
Sbjct: 320 QENIRLDDVVYTALISGLCQEGRS-VDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDV 378

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILL 373
            K  ++L +M+  G  P+ +TY++L+
Sbjct: 379 WKGSKLLKEMQRDGHVPSVVTYNVLM 404



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 140/301 (46%), Gaps = 14/301 (4%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKV---DAMFENV-----KPDRVVFNALITACGQSGA 169
           + E G  A    +  L+    K G +    ++F+ +     +P  V +N L+    + G 
Sbjct: 108 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGV 167

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D  F + + M A    V PD  T   L+       ++D A E++  +    +      +
Sbjct: 168 LDEGFRLKSAMLAS--GVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTF 225

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           T  I+   + G  + A  +Y  M  + ++PD +  + LI      G ++ A +++ +   
Sbjct: 226 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSR 285

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHM--KSIKLKPTVSTMNALITALCDGDQL 347
           +G+    I+Y++L+  C        A E  + +  ++I+L   V T  ALI+ LC   + 
Sbjct: 286 KGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYT--ALISGLCQEGRS 343

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
               ++L +M S+GL P+T TY++++    +K DV  G  LL + + DG +P++V +  +
Sbjct: 344 VDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVL 403

Query: 408 I 408
           +
Sbjct: 404 M 404



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 109/265 (41%), Gaps = 6/265 (2%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFD--VLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           + D  VF+ LITA  +SG +  A +   L   +    P D     +  LMK         
Sbjct: 44  RSDIYVFSGLITAYLESGFLRDAIECYXLTRKHKLWVPFDTCRKVLEYLMKL----KYFK 99

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
                Y+ I +     +   + I ++   + GD   A SV+D +TK G+ P  V  + L+
Sbjct: 100 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLM 159

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +     G ++  F +       G+   + +YS L+           A EL++ M    L 
Sbjct: 160 NGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLV 219

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P   T   LI   C   ++   ME+   M S  L P+ ITY+ L+    +K D++    L
Sbjct: 220 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 279

Query: 389 LSQAKEDGVIPNLVMFKCIIGMCSR 413
           +      G+ P+ + +  +I  C +
Sbjct: 280 IDDMSRKGLKPDKITYTTLIDGCCK 304



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 109/269 (40%), Gaps = 54/269 (20%)

Query: 17  KHANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           K A  A  V   +++Y+ LI    ++ ++ +  +L ++M  KGL+     +       CK
Sbjct: 175 KSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCK 234

Query: 73  SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           + + +  A   +K + +    P L T+N L+       D + A  ++  +   GLK D  
Sbjct: 235 NGR-VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKI 293

Query: 129 LYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
            YTTLI  C K G + + FE        N++ D VV+ ALI+   Q G    A  +L EM
Sbjct: 294 TYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREM 353

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
            +    ++PD  T                                   YT+ IN   + G
Sbjct: 354 LSV--GLNPDTGT-----------------------------------YTMIINEFCKKG 376

Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALID 269
           D      +  +M + G +P  V  + L++
Sbjct: 377 DVWKGSKLLKEMQRDGHVPSVVTYNVLMN 405


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 126/525 (24%), Positives = 223/525 (42%), Gaps = 73/525 (13%)

Query: 67  FFNVCKSQKAIKEAFRFF----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
            FNV      ++EA + F    K    P + + N L+   + S     A    + +  AG
Sbjct: 187 LFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSFFKDMVVAG 246

Query: 123 LKADCKLYTTLITTCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRAF 174
           L      Y  +I   A+ G ++A   +FE +K     PD V +N+LI   G+ G +  A 
Sbjct: 247 LSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAV 306

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
            V  EM       +PD IT  +L+       ++ +A E    + +  ++     Y+  I+
Sbjct: 307 SVFEEMKDA--GCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLID 364

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
              + G    A   + DM + G+ P+E   ++LID     G +  AF++  E +  G+++
Sbjct: 365 AFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNL 424

Query: 295 GIISYSSLM-GACSN----------------------------------AKNWQKALELY 319
            I++Y++L+ G C +                                  AK  +KA+++ 
Sbjct: 425 NIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDIL 484

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           E M    LKP +      I  LC  +++  +M V+ +M   GL  N+  Y+ L+ A  + 
Sbjct: 485 EEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKV 544

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS-RRYEKARTLNEHVLSFNSGRPQI-- 435
                 + LL + ++ G+   +V +  +I G+C     ++A    +H ++ N  +P I  
Sbjct: 545 GKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDH-MTRNGLQPNIMI 603

Query: 436 ---------ENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQL--PYNA-DIRERLV 482
                    +N     A  ++ E +  G  P   V + ++ G ++   P  A  +R R+V
Sbjct: 604 YTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMV 663

Query: 483 ENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
           E +G+  D    +   SLI GF  Y     A SLL+E    GI+P
Sbjct: 664 E-IGMELDLCAYT---SLIWGFSRYGQVQLAKSLLDEMLRKGIIP 704



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 72/262 (27%), Positives = 123/262 (46%), Gaps = 3/262 (1%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           +P   VF+ L       G ++ A     +MN     V P   +   L+   + + +   A
Sbjct: 178 RPGFGVFDTLFNVLVDLGMLEEARQCFWKMNK--FRVLPKVRSCNELLHRLSKSSKGGLA 235

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
              +K +    +  +   Y + I C ++ GD E A S++++M  KG+ PD V  ++LID 
Sbjct: 236 LSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDG 295

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
            G  G +  A  + +E K+ G    +I+Y+SL+      +   +A E    MK   L+P 
Sbjct: 296 YGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPN 355

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           V T + LI A C    L +  +   DM  +GL PN  TY+ L+ A  +  D+     L S
Sbjct: 356 VVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLES 415

Query: 391 QAKEDGVIPNLVMFKCII-GMC 411
           + ++ GV  N+V +  ++ G+C
Sbjct: 416 EMQQAGVNLNIVTYTALLDGLC 437



 Score =  102 bits (255), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 181/400 (45%), Gaps = 19/400 (4%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN +I    R+G +     L E+M+ KGL   D V +    +       +  A
Sbjct: 247 LSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRP-DIVTYNSLIDGYGKVGMLTGA 305

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F+ + +    P + T+N L++     +    AF+ L  +++ GL+ +   Y+TLI  
Sbjct: 306 VSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDA 365

Query: 137 CAKSGK--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K+G         VD +   ++P+   + +LI A  + G ++ AF + +EM      V+
Sbjct: 366 FCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQA--GVN 423

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
            + +T  AL+      G++  A E++  + K       ++YT   +   +    E A  +
Sbjct: 424 LNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDI 483

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            ++M KK + PD +     I       ++E +  +++E  + G++     Y++L+ A   
Sbjct: 484 LEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFK 543

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                +A+ L + M+ + +K TV T   LI  LC    + + +     M   GL PN + 
Sbjct: 544 VGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMI 603

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           Y+ L+    + D +E    L ++  + G+ P+ +++  +I
Sbjct: 604 YTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLI 643



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 90/423 (21%), Positives = 167/423 (39%), Gaps = 54/423 (12%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +YN LI    +  RI +  + L  M+++GL      Y       CK+   + EA +FF  
Sbjct: 323 TYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLL-EANKFFVD 381

Query: 85  --KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             ++   P   T+  L+       D   AF++   +Q+AG+  +   YT L+    + G+
Sbjct: 382 MIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGR 441

Query: 143 V---DAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +   + +F  +       ++ ++ +L     ++  +++A D+L EMN +   + PD +  
Sbjct: 442 MREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKK--NLKPDLLLY 499

Query: 195 GA-----------------------------------LMKACANAGQVDRAREVYKMIHK 219
           G                                    L+ A    G+   A  + + +  
Sbjct: 500 GTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQD 559

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
             IK T   Y + I+   + G  + A   +D MT+ G+ P+ +  +ALID       +E 
Sbjct: 560 LGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEE 619

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A  +  E  ++GIS   + Y+SL+       N  +AL L   M  I ++  +    +LI 
Sbjct: 620 AKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIW 679

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
                 Q+     +L +M   G+ P+ +    LL       D+   L L       G+I 
Sbjct: 680 GFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRGLIS 739

Query: 400 NLV 402
             +
Sbjct: 740 GTI 742



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 75/357 (21%), Positives = 146/357 (40%), Gaps = 19/357 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           +Y  LI    + G ++E   L  +M++ G+      Y A    +C+  + ++EA   F  
Sbjct: 393 TYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGR-MREAEELFGA 451

Query: 86  -LVPNPTLS--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
            L    TL+   +  L      +K  E A  +L  + +  LK D  LY T I    +  +
Sbjct: 452 LLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNE 511

Query: 143 VDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           ++     ++         +  ++  LI A  + G    A ++L EM  +   +    +T 
Sbjct: 512 IEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEM--QDLGIKITVVTY 569

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
           G L+      G V +A   +  + +  ++    +YT  I+   +    E A +++++M  
Sbjct: 570 GVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLD 629

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           KG+ PD++  ++LID     G    A  +       G+ + + +Y+SL+   S     Q 
Sbjct: 630 KGISPDKLVYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQL 689

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           A  L + M    + P       L+    +   + + + +  DM   GL   TI  ++
Sbjct: 690 AKSLLDEMLRKGIIPDQVLCICLLRKYYELGDINEALALHDDMARRGLISGTIDITV 746


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/420 (23%), Positives = 186/420 (44%), Gaps = 33/420 (7%)

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDAMFENVKPDRV-----VFNA 159
           +E A +    + E G K   K+Y  ++       K   ++ ++ N+K D +      +N 
Sbjct: 124 AEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNM 183

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
           L+ A  ++  VD A  +LAEM+ +     PD ++   ++ +    G+V+ ARE+      
Sbjct: 184 LLKALCKNDRVDAARKLLAEMSYK--GCIPDAVSYTTVVSSMCRLGKVEEAREL-----S 236

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
             IK    VY   IN   +    E    ++++M  +G+ PD +  S +I+     G VE 
Sbjct: 237 MRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEM 296

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A  +L +   +G S  + +++SLM          +AL+L+  M     +P     N LI 
Sbjct: 297 ALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIH 356

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
            LC   ++ + + V   M+  G+ PN  TYS L+    +  D+     + ++   +G +P
Sbjct: 357 GLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLP 416

Query: 400 NLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSGRPQIE-NKW---------TSLALMVY 447
           N+V++ C++ +  R   +  A  L E++ + N     I  N +         T  A+ V 
Sbjct: 417 NVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVL 476

Query: 448 REAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLC---SLIDGF 504
            +    G  P V   ++VL  L   +NA      ++ +G   +   +SNL    +++ GF
Sbjct: 477 NQMRQYGCAPNVTTYNEVLDGL---FNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGF 533



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 147/358 (41%), Gaps = 43/358 (12%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---NV 150
           T+NML+     +   + A ++L  +   G   D   YTT++++  + GKV+   E    +
Sbjct: 180 TYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRI 239

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           K    V+NALI    +   ++  F++  EM   V  +DPD IT   ++   +  G V+ A
Sbjct: 240 KSFVPVYNALINGFCREHKMEEVFELFNEM--AVEGIDPDVITYSTVINTLSEMGNVEMA 297

Query: 211 REVY-KM--------IHKYN----------------------IKGTPEVYTIAINC---- 235
             V  KM        +H +                       I+   E  T+A N     
Sbjct: 298 LAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHG 357

Query: 236 -CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
            CS  G    A SV   M + GV P+E   S LID    AG +  A EI  +    G   
Sbjct: 358 LCSY-GKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLP 416

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
            ++ Y+ ++        +  AL L E+M +    P   T N  I  LC   +    M+VL
Sbjct: 417 NVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVL 476

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + M+  G  PN  TY+ +L            L ++ + +E  +  NLV +  I+ G C
Sbjct: 477 NQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFC 534



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/456 (19%), Positives = 189/456 (41%), Gaps = 60/456 (13%)

Query: 10  QFPYPNGKHANYAHD-VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYH 64
           +F   NG + N   D +   +++YN L++      R+     LL +M  KG +     Y 
Sbjct: 158 KFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYT 217

Query: 65  ARFFNVC---KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121
               ++C   K ++A + + R    VP      +N L++        E  F++   +   
Sbjct: 218 TVVSSMCRLGKVEEARELSMRIKSFVP-----VYNALINGFCREHKMEEVFELFNEMAVE 272

Query: 122 GLKADCKLYTTLITTCAKSGKVD-------AMF--------------------------- 147
           G+  D   Y+T+I T ++ G V+        MF                           
Sbjct: 273 GIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEA 332

Query: 148 ---------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
                    E  +P+ V +N LI      G +  A  V  +M  E + V P+  T   L+
Sbjct: 333 LDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKM--ERNGVFPNETTYSTLI 390

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
              A AG +  A E++  +          VYT  ++   +   +  A  + ++M      
Sbjct: 391 DGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCP 450

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P+ +  +  I     +GK E A ++L + +  G +  + +Y+ ++    NAK  ++AL++
Sbjct: 451 PNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQI 510

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
              ++ +++K  + T N +++  C        +++   +   G  P++ITY+ ++ A  +
Sbjct: 511 VGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCK 570

Query: 379 KDDVEVGLMLLSQAKEDGV-IPNLVMFKCII-GMCS 412
           + +V+  + L+ +  + G   P++  +  ++ G+C+
Sbjct: 571 QGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCN 606



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/258 (21%), Positives = 118/258 (45%), Gaps = 7/258 (2%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           K   + +  +I   G    +D    +L  M  E    + D   I  ++ A   AG  ++A
Sbjct: 70  KHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVI--VINAYRRAGLAEQA 127

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            + +  I ++  K + ++Y   ++       ++    +Y++M + G+  +    + L+  
Sbjct: 128 LKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKA 187

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
                +V+AA ++L E   +G     +SY++++ +       ++A EL     S+++K  
Sbjct: 188 LCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEAREL-----SMRIKSF 242

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           V   NALI   C   ++ +  E+ ++M   G+ P+ ITYS ++       +VE+ L +L+
Sbjct: 243 VPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLA 302

Query: 391 QAKEDGVIPNLVMFKCII 408
           +    G  PN+  F  ++
Sbjct: 303 KMFLRGCSPNVHTFTSLM 320



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 134/332 (40%), Gaps = 18/332 (5%)

Query: 26  SEQLHSYNRLIRQ----GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  +H++  L++     GR+ E +DL   M ++G       Y+     +C   K ++   
Sbjct: 310 SPNVHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVS 369

Query: 82  RFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
              K+  N   P  +T++ L+   A + D  GA ++   +   G   +  +YT ++    
Sbjct: 370 VSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLC 429

Query: 139 KSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           ++   +            N  P+ + FN  I     SG  + A  VL +M    +   P+
Sbjct: 430 RNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQ--YGCAPN 487

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
             T   ++    NA +   A ++   I +  IK     Y   ++     G ++ A  +  
Sbjct: 488 VTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAG 547

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNA 309
            +   G  PD +  + +I      G+V+ A +++     +G     + +Y+SL+    N 
Sbjct: 548 KLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNW 607

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
               +A+   + M +  + P  +T NAL+  L
Sbjct: 608 IGVDEAVVHLDKMINEGICPNRATWNALVRGL 639



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 108/247 (43%), Gaps = 7/247 (2%)

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + +I   G+   ++    +LQ  K +GIS     +  ++ A   A   ++AL+ +  +  
Sbjct: 77  TTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGE 136

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
              KP+V   N ++ AL   ++      + ++MK  G+  N  TY++LL A  + D V+ 
Sbjct: 137 FGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDA 196

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSL 442
              LL++    G IP+ V +  ++    R  + E+AR L+  + SF      + N +   
Sbjct: 197 ARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIKSFVPVYNALINGFCRE 256

Query: 443 ALM-----VYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 497
             M     ++ E  V G  P V   S V+  L    N ++   ++  + +   +      
Sbjct: 257 HKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTF 316

Query: 498 CSLIDGF 504
            SL+ G+
Sbjct: 317 TSLMKGY 323



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 75/175 (42%), Gaps = 1/175 (0%)

Query: 210 AREVYKMIHKYN-IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
           A   +K I   N  K TP  YT  I       D +    +   M  +G+  +E     +I
Sbjct: 56  ALHFFKSIANSNSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVI 115

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +    AG  E A +        G    +  Y+ ++ A  +   +Q    +Y +MK   ++
Sbjct: 116 NAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIE 175

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
             V T N L+ ALC  D++    ++L++M   G  P+ ++Y+ ++ +  R   VE
Sbjct: 176 LNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVE 230


>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74900, mitochondrial; AltName: Full=Protein
           ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
           Precursor
 gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
 gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
          Length = 482

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 151/337 (44%), Gaps = 14/337 (4%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R  ++ P+P   TF ++    AS+   + A ++   + E G   D   + T++    KS 
Sbjct: 118 RSLRIGPSP--KTFAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSK 175

Query: 142 KVDAMFENVKP-------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           +V+  +E  +        D V +N ++          +A +VL EM      ++P+  T 
Sbjct: 176 RVEKAYELFRALRGRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVER--GINPNLTTY 233

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             ++K    AGQ+  A E +  + K + +     YT  ++     G+ + A +V+D+M +
Sbjct: 234 NTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIR 293

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           +GV+P     +A+I        VE A  + +E   +G    + +Y+ L+    +A  + +
Sbjct: 294 EGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSR 353

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
             EL + M++   +P   T N +I    +  ++ K + +   M S    PN  TY+IL+ 
Sbjct: 354 GEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILIS 413

Query: 375 AC---ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
                +R +D+ V   LL +  E G IP    F  ++
Sbjct: 414 GMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVL 450


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/398 (22%), Positives = 174/398 (43%), Gaps = 20/398 (5%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQK---AIKEAFRF 83
           +N+L+    +  +    I L E M+  G+   D   ++ F N  C+  +   A+    + 
Sbjct: 86  FNKLLSAVAKMNKFELVISLGEQMQTLGI-SHDLYTYSIFINCFCRRSQLSLALAVLAKM 144

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK- 142
            KL   P + T + L++    SK    A  ++  + E G K D   +TTLI       K 
Sbjct: 145 MKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKA 204

Query: 143 ------VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
                 VD M +   +PD V +  ++    + G +D A ++L +M  E   +  + +   
Sbjct: 205 SEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKM--EAARIKANVVIFN 262

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++ +      V+ A +++  +    I+     Y   INC    G W  A  +  +M +K
Sbjct: 263 TIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEK 322

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + P+ V  +ALID     GK+  A ++ +E   + I    I+Y+ L+          +A
Sbjct: 323 KINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEA 382

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            ++++ M S    P + T N LI   C   ++   +E+  +M   GL  NT+TY+ ++  
Sbjct: 383 KQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQG 442

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
             +  D +   M+  Q   + V  +++ +  ++ G+CS
Sbjct: 443 FFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCS 480



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/333 (21%), Positives = 153/333 (45%), Gaps = 15/333 (4%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAMF 147
           FN ++      +  E A  +   ++  G++ +   Y +LI      G+       +  M 
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320

Query: 148 EN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
           E  + P+ V FNALI A  + G +  A  +  EM      +DPD IT   L+       +
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQ--RSIDPDTITYNLLINGFCMHNR 378

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           +D A++++K +   +     + Y   IN   +    E    ++ +M+++G++ + V  + 
Sbjct: 379 LDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTT 438

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 325
           +I     AG  ++A  + ++  +  +   I++YS L+ G CS  K    AL ++++++  
Sbjct: 439 IIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGK-LDTALVIFKYLQKS 497

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
           +++  +   N +I  +C   ++ +  ++     SL + P+ +TY+ ++     K  ++  
Sbjct: 498 EMELNIFIYNTMIEGMCKAGKVGEAWDLFC---SLSIKPDVVTYNTMISGLCSKRLLQEA 554

Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
             L  + KEDG +PN   +  +I    R  ++A
Sbjct: 555 DDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRA 587



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 146/367 (39%), Gaps = 19/367 (5%)

Query: 58  DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
           D  ++   R  ++ K   A+       K  P P++  FN L+S  A     E    +   
Sbjct: 49  DYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQ 108

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVD--------AMFENVKPDRVVFNALITACGQSGA 169
           +Q  G+  D   Y+  I    +  ++          M    +PD V  ++L+     S  
Sbjct: 109 MQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKR 168

Query: 170 VDRA---FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           +  A    D + EM  +     PD  T   L+       +   A  +   + +   +   
Sbjct: 169 ISDAVALVDQMVEMGYK-----PDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDL 223

Query: 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             Y   +N   + GD + A ++ + M    +  + V  + +ID       VE A ++  E
Sbjct: 224 VTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTE 283

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            + +GI   +++Y+SL+    N   W  A  L  +M   K+ P V T NALI A     +
Sbjct: 284 METKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGK 343

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
           L +  ++  +M    + P+TITY++L+   C      E   M      +D  +PN+  + 
Sbjct: 344 LVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKD-CLPNIQTYN 402

Query: 406 CII-GMC 411
            +I G C
Sbjct: 403 TLINGFC 409



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 85/388 (21%), Positives = 162/388 (41%), Gaps = 15/388 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           NRL    ++ + +DL  DM +      +++ +K+  A    + K +  I    +   L  
Sbjct: 56  NRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSA-VAKMNKFELVISLGEQMQTLGI 114

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------ 142
           +  L T+++ ++          A  VL  + + G + D    ++L+     S +      
Sbjct: 115 SHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVA 174

Query: 143 -VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            VD M E   KPD   F  LI           A  ++ +M        PD +T G ++  
Sbjct: 175 LVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQ--RGCQPDLVTYGTVVNG 232

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G +D A  +   +    IK    ++   I+   +    E A  ++ +M  KG+ P+
Sbjct: 233 LCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPN 292

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  ++LI+   + G+   A  +L     + I+  ++++++L+ A        +A +L+E
Sbjct: 293 VVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHE 352

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    + P   T N LI   C  ++L +  ++   M S    PN  TY+ L+    +  
Sbjct: 353 EMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCK 412

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            VE G+ L  +  + G++ N V +  II
Sbjct: 413 RVEDGVELFREMSQRGLVGNTVTYTTII 440



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 102/238 (42%), Gaps = 14/238 (5%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  ++ DM K    P  V  + L+       K E    + ++ +  GIS  + +YS  + 
Sbjct: 67  AVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
                     AL +   M  +  +P + T+++L+   C   ++   + ++  M  +G  P
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 413
           +T T++ L+      +     + L+ Q  + G  P+LV +  ++ G+C R          
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLL 246

Query: 414 -RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
            + E AR +  +V+ FN+    + + +   +A+ ++ E    G  P V   + ++ CL
Sbjct: 247 NKMEAAR-IKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCL 303


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 139/325 (42%), Gaps = 21/325 (6%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMSVCASSKDSEGAFQVLR 116
           F+ C+         R+FKLV              +L  FN+LM       D   A  V  
Sbjct: 89  FDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 148

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG 168
            + + GL+     Y TL+    + G +D  F          V+PD   ++ LI    +  
Sbjct: 149 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 208

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +D A ++  EM   V  + P+ +T   L+      G+VD A E+YK +   ++      
Sbjct: 209 KMDDANELFDEM--LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLIT 266

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   I    + GD   A  + D+M+ KG+ PD+   + LID     G ++AAFE  +   
Sbjct: 267 YNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMI 326

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            + I +  ++Y++++           A ++   M S+ LKP   T   +I   C    + 
Sbjct: 327 QENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVW 386

Query: 349 KTMEVLSDMKSLGLCPNTITYSILL 373
           K  ++L +M+  G  P+  TY++L+
Sbjct: 387 KGSKLLKEMQRNGHVPSVXTYNVLM 411



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 108/265 (40%), Gaps = 6/265 (2%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDV--LAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           + D  VF+ LITA  +SG +  A +   L   +    P D     +  LMK         
Sbjct: 51  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKL----RYFK 106

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
                Y+ I +     +   + I ++   + GD   A SV+D +TK G+ P  V  + L+
Sbjct: 107 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 166

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +     G ++  F +       G+   + +YS L+           A EL++ M    L 
Sbjct: 167 NGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 226

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P   T   LI   C   ++   ME+   M S  L P+ ITY+ L+    +K D+     L
Sbjct: 227 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGL 286

Query: 389 LSQAKEDGVIPNLVMFKCIIGMCSR 413
           + +    G+ P+   +  +I  C +
Sbjct: 287 IDEMSMKGLKPDKFTYTTLIDGCCK 311



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/247 (24%), Positives = 97/247 (39%), Gaps = 23/247 (9%)

Query: 31  SYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           SYN L    IR G + E   L   M   G+      Y      +CK  K + +A   F  
Sbjct: 161 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-MDDANELFDE 219

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                LVPN    TF  L+     +   + A ++ + +    L  D   Y TLI    K 
Sbjct: 220 MLVKGLVPNGV--TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKK 277

Query: 141 GK-------VDAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G        +D M  + +KPD+  +  LI  C + G +D AF+    M  E   +  D +
Sbjct: 278 GDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQE--NIRLDDV 335

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              A++      G+   A ++ + +    +K     YT+ IN   + GD      +  +M
Sbjct: 336 AYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEM 395

Query: 253 TKKGVIP 259
            + G +P
Sbjct: 396 QRNGHVP 402


>gi|302819136|ref|XP_002991239.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
 gi|300140950|gb|EFJ07667.1| hypothetical protein SELMODRAFT_448344 [Selaginella moellendorffii]
          Length = 561

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 149/342 (43%), Gaps = 30/342 (8%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R     P+PT  T+  +M                +   EAG   D +    L+T      
Sbjct: 214 RLLTTGPSPTAQTYQTMM----------------KSYSEAGRLDDVQRIFKLVT------ 251

Query: 142 KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             D+    VKPD  ++N +I   G+ G V++A  V   M  E   V    +T  +L+ AC
Sbjct: 252 --DSPSPTVKPDARMYNLMIHTYGKQGKVEQAMSVYQSMKRER--VALTIVTFNSLL-AC 306

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               +   A +V++ +    +      YT  +N  ++    E A + +DDM   G+ P +
Sbjct: 307 QKTWK--DAEDVFRKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQ 364

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  +ALI+        E A  +L++ K  G +  + SY+SL+ A  +     KA +    
Sbjct: 365 VAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLR 424

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK   L+P + T   L+T   +G++L   M     MK  GL PN   Y++L+ A    DD
Sbjct: 425 MKEADLQPNLQTFCVLMTGYANGNKLDNMMRSFETMKLAGLEPNRHVYTVLVNAYGSNDD 484

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 423
            +  ++   Q    G  P+ ++ + ++   ++ +E+   ++E
Sbjct: 485 FDSAIIWYKQMLGTGYKPDPIL-RTVLLKIAKSHEQTEEIHE 525



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 106/250 (42%), Gaps = 42/250 (16%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+  C + GQVD+   +++ + +  +    E+YT+ I    +   ++ A +V+  +   G
Sbjct: 161 LLAYCKD-GQVDKTEGIFQRMAELGVVANIEMYTLQIEGYGRRRSFDKAEAVFQRLLTTG 219

Query: 257 --------------------------------------VIPDEVFLSALIDFAGHAGKVE 278
                                                 V PD    + +I   G  GKVE
Sbjct: 220 PSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYGKQGKVE 279

Query: 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338
            A  + Q  K + +++ I++++SL+ AC   K W+ A +++  +++ KL P V +  AL+
Sbjct: 280 QAMSVYQSMKRERVALTIVTFNSLL-ACQ--KTWKDAEDVFRKLQAAKLDPDVFSYTALV 336

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
            A     +         DM + G+ P  + Y+ L+ A  +  D E    +L Q K++G  
Sbjct: 337 NAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCT 396

Query: 399 PNLVMFKCII 408
           P +  +  +I
Sbjct: 397 PTVESYTSLI 406



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 99/252 (39%), Gaps = 49/252 (19%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMF 147
           T+ TFN L++   + KD+E  F   R +Q A L  D   YT L+   AK+ + +   A F
Sbjct: 296 TIVTFNSLLACQKTWKDAEDVF---RKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAF 352

Query: 148 EN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNA-------------------- 182
           ++     ++P +V +NALI A  +    + A  VL +M                      
Sbjct: 353 DDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSV 412

Query: 183 -------------EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
                        +   + P+  T   LM   AN  ++D     ++ +    ++    VY
Sbjct: 413 NLMAKAEQTVLRMKEADLQPNLQTFCVLMTGYANGNKLDNMMRSFETMKLAGLEPNRHVY 472

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK- 288
           T+ +N      D++ A   Y  M   G  PD +  + L+  A    + E   E+L   K 
Sbjct: 473 TVLVNAYGSNDDFDSAIIWYKQMLGTGYKPDPILRTVLLKIAKSHEQTEEIHELLGMQKP 532

Query: 289 ----NQGISVGI 296
                +G+  G+
Sbjct: 533 ARSLEEGLDTGL 544


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 160/409 (39%), Gaps = 57/409 (13%)

Query: 58  DMDKVYHARFFNV-----CKSQK---AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109
           D DK     F NV     C++     A++E  R       P+ ST+N L+     +   +
Sbjct: 193 DDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLD 252

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-----ENVKPDRVVFNALITAC 164
            A  + R +  A L+ D         +  K GK          EN  PD V +  LI+  
Sbjct: 253 SASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGL 312

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
            ++   + A D L  M A      P+ +T   L+  C N  Q+ R + V  M+       
Sbjct: 313 CEASLFEEAMDFLNRMRAT--SCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYP 370

Query: 225 TPEVYTIAINCCSQTGDWEFA----------------------------------CSV-- 248
           +P+++   ++    +GD  +A                                  C +  
Sbjct: 371 SPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLD 430

Query: 249 -----YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
                Y +M   GV+ +++ +S+       AGK E AF +++E   QG      +YS ++
Sbjct: 431 LAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVL 490

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
               NA   + A  L+E MK   L   V T   ++ + C    + +  +  ++M+ +G  
Sbjct: 491 NYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCT 550

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           PN +TY+ L+ A  +   V     L      +G +PN+V +  +I G C
Sbjct: 551 PNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHC 599



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 200/476 (42%), Gaps = 44/476 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P  ST++ +++   ++   E AF +   ++  GL AD   YT ++ +  K+G ++     
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F  ++     P+ V + ALI A  ++  V  A ++   M +E     P+ +T  AL+   
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSE--GCLPNIVTYSALIDGH 598

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV------------------YTIAINCCSQTGDWE 243
             AGQV++A ++++ +     K  P+V                  Y   ++   ++   E
Sbjct: 599 CKAGQVEKACQIFERM--CGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVE 656

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  + D M+ +G  P+++   ALID     GK++ A E+  E    G    + +YSSL+
Sbjct: 657 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 716

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                 K    A ++   M      P V     +I  LC   +  +  +++  M+  G  
Sbjct: 717 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ 776

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTL 421
           PN +TY+ ++        +E  L LL +    GV PN V ++ +I  C +    + A  L
Sbjct: 777 PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNL 836

Query: 422 NE-----HVLSFNSG-RPQIE--NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPY 473
            E     H  +  +G R  IE  NK    +L +  E     T P + V   ++  L    
Sbjct: 837 LEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 896

Query: 474 NADIRERLVENLGVSADAL--KRSNLCSLIDG--FGEYDPRAFSLLEEAASFGIVP 525
             ++  RL+E +   +  L    S   SLI+          AF L  E    G++P
Sbjct: 897 RLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIP 952



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 166/397 (41%), Gaps = 56/397 (14%)

Query: 68  FNVCKSQKAIKEAFRFFK---LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           +++CK  K  +EA    +    VP+    T  ++  +C +S   E A   L  ++     
Sbjct: 278 YSLCKVGKW-REALTLVETENFVPDTVFYT-KLISGLCEASLFEE-AMDFLNRMRATSCL 334

Query: 125 ADCKLYTTLITTCAKSGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDV 176
            +   Y+TL+  C    ++          M E   P   +FN+L+ A   SG    A+ +
Sbjct: 335 PNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKL 394

Query: 177 LAEMNAEVHPVDPDHITIGALM------KACANAGQVDRAREVYK-------MIHKYNIK 223
           L +M    H   P ++    L+      K   N   +D A + Y        +++K N+ 
Sbjct: 395 LKKMVKCGHM--PGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVS 452

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                      C    G +E A SV  +M  +G IPD    S ++++  +A K+E AF +
Sbjct: 453 SFTR-------CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLL 505

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
            +E K  G+   + +Y+ ++ +   A   ++A + +  M+ +   P V T  ALI A   
Sbjct: 506 FEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 565

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-----------------CERKDDVEVGL 386
             ++    E+   M S G  PN +TYS L+                   C  KD  +V  
Sbjct: 566 AKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD- 624

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
           M   Q  ++   PN+V +  ++ G C S R E+AR L
Sbjct: 625 MYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKL 661



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 176/423 (41%), Gaps = 64/423 (15%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H+Y   ++  ++S   +L E M  +G L     Y A     CK+ + +++A + F+   
Sbjct: 560 IHAY---LKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQ-VEKACQIFE--- 612

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
                       +C S KD        +   +   + +   Y  L+    KS +V     
Sbjct: 613 -----------RMCGS-KDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 660

Query: 144 --DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             DAM  E  +P+++V++ALI    + G +D A +V  EM+    P      T  +L+  
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATL--YTYSSLIDR 718

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                + D A +V   + + +      +YT  I+   + G  + A  +   M +KG  P+
Sbjct: 719 YFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPN 778

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC-------------- 306
            V  +A+ID  G  GK+E   E+L+   ++G++   ++Y  L+  C              
Sbjct: 779 VVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838

Query: 307 --------SNAKNWQKALELY--EHMKSIKL---------KPTVSTMNALITALCDGDQL 347
                   ++   ++K +E +  E ++S+ L          P +S    LI  L    +L
Sbjct: 839 EMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRL 898

Query: 348 PKTMEVLSDMKSLG--LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
              + +L ++ +    L   + TY+ L+ +    + VE    L S+  + GVIP +  F 
Sbjct: 899 EMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFC 958

Query: 406 CII 408
            +I
Sbjct: 959 SLI 961



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 127/295 (43%), Gaps = 28/295 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFK--LVPN 89
           L + G++ E  ++  +M   G       Y +   R+F V +   A K   +  +    PN
Sbjct: 684 LCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 743

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
             + T  M+  +C   K  E A++++++++E G + +   YT +I      GK++   E 
Sbjct: 744 VVIYT-EMIDGLCKVGKTDE-AYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE---VHPVDPDHITIGALM 198
                   V P+ V +  LI  C ++GA+D A ++L EM       H      +  G   
Sbjct: 802 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK 861

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM-TKKGV 257
           +   + G +D        I + +      VY + I+   +    E A  + +++ T    
Sbjct: 862 EFIESLGLLDE-------IGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSAT 914

Query: 258 IPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK 310
           + D     ++LI+    A KVE AF++  E   +G+   + S+ SL+ G   N+K
Sbjct: 915 LVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSK 969


>gi|356557985|ref|XP_003547290.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16390,
           chloroplastic-like [Glycine max]
          Length = 692

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/422 (23%), Positives = 191/422 (45%), Gaps = 35/422 (8%)

Query: 14  PNGKH--ANYAHDVSEQLHSYNRLI-----RQGRISECIDLLEDMERKGLLDMDKVYHAR 66
           P  KH   N  H  S  L    + +      +  +SE +++L D     + + D V+   
Sbjct: 76  PRAKHLQKNSPHARSSSLTKLAKSLDSCNPTEQHVSEILNVLRD----NVSERDAVF--- 128

Query: 67  FFNVCKSQKAIKEAFRFFKLVPNPT--LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
             N   +      A ++F+   NP   +  +N+ + V   S+D EGA ++   + + G+K
Sbjct: 129 ILNTMVNPNTALLALKYFQPKINPAKHVVLYNVTLKVLRESRDFEGAEKLFDEMLQRGVK 188

Query: 125 ADCKLYTTLITTCAKSG---KVDAMFENV-----KPDRVVFNALITACGQSGAVDRAFDV 176
            D   ++TL+   + SG   K   +FE +     +PD +  + ++ A  ++  VD+A ++
Sbjct: 189 PDNITFSTLVNCASVSGLPNKAVELFEKMSGFGCEPDGITCSGMVYAYARTNNVDKAVNL 248

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
                AE   +D   +T   L+K  + AG  D+  EVY+ +    +K     Y   +   
Sbjct: 249 YDRAKAENWSLDA--VTFSTLIKMYSMAGNYDKCLEVYQEMKVLGVKPNVATYNTLLGAM 306

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
            ++     A +++ +M   GV PD +  ++L++    A   E A  + +E K  G+ +  
Sbjct: 307 LRSKKHRQAKAIHKEMKSNGVSPDFITYASLLEVYTRAQCSEDALGVYKEMKGNGMDMTA 366

Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLS 355
             Y+ L+  C++     +A+E++  MKS    +P   T ++LIT      ++ +   +L+
Sbjct: 367 DLYNKLLAMCADVGYTDRAVEIFYEMKSSGTCQPDSWTFSSLITIYSRSGKVSEVEGMLN 426

Query: 356 DMKSLGLCPNTITYSILLVAC----ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           +M   G  P TI     L+ C    +R DDV   + +  Q  + G++PN     C++ + 
Sbjct: 427 EMIQSGFQP-TIFVMTSLIRCYGKAKRTDDV---VKIFKQLLDLGIVPNDHFCCCLLNVL 482

Query: 412 SR 413
           ++
Sbjct: 483 TQ 484



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 132/285 (46%), Gaps = 15/285 (5%)

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +K    +   + A +++  + +  +K     ++  +NC S +G    A  +++ M+  G 
Sbjct: 163 LKVLRESRDFEGAEKLFDEMLQRGVKPDNITFSTLVNCASVSGLPNKAVELFEKMSGFGC 222

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD +  S ++        V+ A  +   AK +  S+  +++S+L+   S A N+ K LE
Sbjct: 223 EPDGITCSGMVYAYARTNNVDKAVNLYDRAKAENWSLDAVTFSTLIKMYSMAGNYDKCLE 282

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           +Y+ MK + +KP V+T N L+ A+    +  +   +  +MKS G+ P+ ITY+ LL    
Sbjct: 283 VYQEMKVLGVKPNVATYNTLLGAMLRSKKHRQAKAIHKEMKSNGVSPDFITYASLLEVYT 342

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIEN 437
           R    E  L +  + K +G+     ++  ++ MC+      R +       +SG  Q  +
Sbjct: 343 RAQCSEDALGVYKEMKGNGMDMTADLYNKLLAMCADVGYTDRAVEIFYEMKSSGTCQ-PD 401

Query: 438 KWTSLALM--------------VYREAIVAGTIPTVEVVSKVLGC 468
            WT  +L+              +  E I +G  PT+ V++ ++ C
Sbjct: 402 SWTFSSLITIYSRSGKVSEVEGMLNEMIQSGFQPTIFVMTSLIRC 446



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/197 (20%), Positives = 85/197 (43%), Gaps = 9/197 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG-KVDAM-- 146
           P ++T+N L+     SK    A  + + ++  G+  D   Y +L+    ++    DA+  
Sbjct: 294 PNVATYNTLLGAMLRSKKHRQAKAIHKEMKSNGVSPDFITYASLLEVYTRAQCSEDALGV 353

Query: 147 FENVKPDRV-----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           ++ +K + +     ++N L+  C   G  DRA ++  EM +      PD  T  +L+   
Sbjct: 354 YKEMKGNGMDMTADLYNKLLAMCADVGYTDRAVEIFYEMKSS-GTCQPDSWTFSSLITIY 412

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           + +G+V     +   + +   + T  V T  I C  +    +    ++  +   G++P++
Sbjct: 413 SRSGKVSEVEGMLNEMIQSGFQPTIFVMTSLIRCYGKAKRTDDVVKIFKQLLDLGIVPND 472

Query: 262 VFLSALIDFAGHAGKVE 278
            F   L++      K E
Sbjct: 473 HFCCCLLNVLTQTPKEE 489



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 27/176 (15%)

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           ++ Y+  +     +++++ A +L++ M    +KP   T + L+          K +E+  
Sbjct: 156 VVLYNVTLKVLRESRDFEGAEKLFDEMLQRGVKPDNITFSTLVNCASVSGLPNKAVELFE 215

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-- 413
            M   G  P+ IT S ++ A  R ++V+  + L  +AK +    + V F  +I M S   
Sbjct: 216 KMSGFGCEPDGITCSGMVYAYARTNNVDKAVNLYDRAKAENWSLDAVTFSTLIKMYSMAG 275

Query: 414 RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
            Y+K                          L VY+E  V G  P V   + +LG +
Sbjct: 276 NYDKC-------------------------LEVYQEMKVLGVKPNVATYNTLLGAM 306


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/394 (21%), Positives = 172/394 (43%), Gaps = 17/394 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRF 83
           +YN L     R G   E    L+ M  KGLL     Y+     + NV +  +A+    R 
Sbjct: 323 TYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRM 382

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K    P ++T+N++  +           ++L  +  +G   +   + T++  C K G  
Sbjct: 383 KKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCGKRGME 442

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D +           V+  R  +N LI+A G+ G+   AF +  EM +      P   T  
Sbjct: 443 DYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISS--GFTPCLTTYN 500

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           AL+   +  G    A+ +   + K   K   + Y++ + C ++ G+     S+  ++   
Sbjct: 501 ALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAGIESIEKEVYVG 560

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            + P  V L  L+       ++E   +  QE K QG    ++ ++S++   +    + KA
Sbjct: 561 TIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKA 620

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            E+++ +K   L P + T N+L+      ++  +  ++L  +KS  + P+ ++Y+ ++  
Sbjct: 621 TEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVING 680

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
             ++  ++    +LS+   DG+ P +V +  ++G
Sbjct: 681 FCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVG 714



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 129/302 (42%), Gaps = 46/302 (15%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG-AVDR 172
           G + D + YTT++   +++G+ +   +         V P  V +N ++   G+ G +  R
Sbjct: 175 GSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPR 234

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
              +L EM A    V+PD  T   ++ AC   G +D+A                      
Sbjct: 235 IVALLEEMRAA--GVEPDDFTASTVIAACGRDGLLDQA---------------------- 270

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
                         + ++D+  +G +P  V  +AL+   G AG    A  +L+E ++ G 
Sbjct: 271 -------------VAFFEDLKARGHVPCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGC 317

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
               ++Y+ L G  + A  +++A +  + M S  L P   T N ++TA  +  ++ + + 
Sbjct: 318 QPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALA 377

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           +   MK  G  PN  TY+++     +K      L +L +    G  PN V +  ++ +C 
Sbjct: 378 LFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCG 437

Query: 413 RR 414
           +R
Sbjct: 438 KR 439



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 80/363 (22%), Positives = 147/363 (40%), Gaps = 16/363 (4%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----VDAMFEN-----VKPDRVVFNA 159
           E A Q+   ++  G+      Y  ++    + G+    + A+ E      V+PD    + 
Sbjct: 197 ERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAAGVEPDDFTAST 256

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
           +I ACG+ G +D+A     ++ A  H   P  +T  AL++    AG    A  V K +  
Sbjct: 257 VIAACGRDGLLDQAVAFFEDLKARGHV--PCVVTYNALLQVFGKAGNYTEALRVLKEMED 314

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
              +     Y       ++ G +E A    D MT KG++P+    + ++    + G+V+ 
Sbjct: 315 SGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYANVGRVDE 374

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A  +    K  G    + +Y+ + G       +   LE+ E M      P   T N ++ 
Sbjct: 375 ALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLA 434

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
                        VL+ MKS G+  +  TY+ L+ A  R         +  +    G  P
Sbjct: 435 VCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMISSGFTP 494

Query: 400 NLVMFKCIIGMCSRR--YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 457
            L  +  ++ + SR+  +  A+++   +L  N  +P  ++   SL L  Y +   A  I 
Sbjct: 495 CLTTYNALLNVLSRQGDWSTAQSIVSKMLK-NGFKPNDQS--YSLLLQCYAKGGNAAGIE 551

Query: 458 TVE 460
           ++E
Sbjct: 552 SIE 554



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 130/282 (46%), Gaps = 20/282 (7%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P L+T+N L++V +   D   A  ++  + + G K + + Y+ L+   AK G   A  E
Sbjct: 493 TPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNA-AGIE 551

Query: 149 NVK---------PDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           +++         P  V+   L+ A   C +   V++AF    E+ A+ +   PD +   +
Sbjct: 552 SIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQ---EVKAQGY--KPDLVIFNS 606

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKK 255
           ++   A  G   +A E++  I +  +      Y   ++  +++ + WE A  +   +   
Sbjct: 607 MLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWE-AEKILKQLKSS 665

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
            V PD V  + +I+     G ++ A  IL E    G++  +++Y +L+G  ++ + + +A
Sbjct: 666 QVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEA 725

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
            E+  +M    LKP   T   ++ + C   +  +  E LS++
Sbjct: 726 REVVNYMIHHNLKPMELTYRRVVDSYCKAKRYDEAREFLSEI 767



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 66/375 (17%), Positives = 148/375 (39%), Gaps = 44/375 (11%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK--AIKEAFR-FFKLVPNPTLSTF 95
           GR+ E + L + M++ G +     Y+  F  + K  +  A+ E      +    P   T+
Sbjct: 370 GRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTW 429

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------- 148
           N +++VC      +   +VL  ++  G++     Y TLI+   + G     F+       
Sbjct: 430 NTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAYGRCGSRTYAFKMYDEMIS 489

Query: 149 -NVKPDRVVFNALITACGQSGAVDRAFDVLAEM-----------------------NAE- 183
               P    +NAL+    + G    A  ++++M                       NA  
Sbjct: 490 SGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQSYSLLLQCYAKGGNAAG 549

Query: 184 ---------VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
                    V  + P  + +  L+ A     +++   + ++ +     K    ++   + 
Sbjct: 550 IESIEKEVYVGTIFPSWVILRTLVIANFKCRRLEGVEKAFQEVKAQGYKPDLVIFNSMLA 609

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
             ++ G +  A  ++D + + G+ PD +  ++L+D    + +   A +IL++ K+  +  
Sbjct: 610 MYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKP 669

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
            ++SY++++         ++A  +   M +  + P V T + L+      +   +  EV+
Sbjct: 670 DVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASLEMFNEAREVV 729

Query: 355 SDMKSLGLCPNTITY 369
           + M    L P  +TY
Sbjct: 730 NYMIHHNLKPMELTY 744


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 141/325 (43%), Gaps = 21/325 (6%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMSVCASSKDSEGAFQVLR 116
           F+ C+         ++FKLV              +L  FN+LM       D   A  V  
Sbjct: 90  FDTCRKVLEHMMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFN 149

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG 168
            + + GL+     + TL+    + G +D  F          V+PD   ++ LI    +  
Sbjct: 150 AITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKES 209

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +D A ++  EM  +   + P+ +T   L+     +G+VD A E+YK +   ++      
Sbjct: 210 KMDDANELFDEMLDK--GLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLIT 267

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   I    + GD + A  + D+M+ KG+ PD++  + LID     G +E AFE  +   
Sbjct: 268 YNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMI 327

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            + I +  ++Y++L+        +  A ++   M S  LKP   T   +I   C    + 
Sbjct: 328 QENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVW 387

Query: 349 KTMEVLSDMKSLGLCPNTITYSILL 373
              ++L +M+  G  P+ +TY++L+
Sbjct: 388 TGSKLLKEMQRDGHVPSVVTYNVLM 412



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 136/299 (45%), Gaps = 10/299 (3%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKV---DAMFENV-----KPDRVVFNALITACGQSGA 169
           + E G  A    +  L+    K G +    ++F  +     +P  V FN L+    + G 
Sbjct: 116 ILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGD 175

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D  F + + M+A    V PD  T   L+       ++D A E++  +    +      +
Sbjct: 176 LDEGFRLKSAMHAS--GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTF 233

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           T  I+   ++G  + A  +Y  M  + + PD +  + LI      G ++ A +++ E   
Sbjct: 234 TTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSM 293

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           +G+    I+Y++L+  C    + + A E  + M    ++       ALI+ LC   +   
Sbjct: 294 KGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLD 353

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             +VL +M S GL P+T TY++++    +K DV  G  LL + + DG +P++V +  ++
Sbjct: 354 AEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLM 412



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 110/265 (41%), Gaps = 6/265 (2%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDV--LAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           + D  VF+ LITA  +SG +  A +   L   +    P D     +  +MK         
Sbjct: 52  RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHMMKL----KYFK 107

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
                Y+ I +     +   + I ++   + GD   A SV++ +TK G+ P  V  + L+
Sbjct: 108 LVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLM 167

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +     G ++  F +       G+   + +YS L+           A EL++ M    L 
Sbjct: 168 NGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLV 227

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P   T   LI   C   ++   ME+   M S  L P+ ITY+ L+    +K D++    L
Sbjct: 228 PNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDL 287

Query: 389 LSQAKEDGVIPNLVMFKCIIGMCSR 413
           + +    G+ P+ + +  +I  C +
Sbjct: 288 IDEMSMKGLKPDKITYTTLIDGCCK 312



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 100/251 (39%), Gaps = 19/251 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------L 86
           N  IR G + E   L   M   G+      Y      +CK  K + +A   F       L
Sbjct: 168 NGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESK-MDDANELFDEMLDKGL 226

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---- 142
           VPN    TF  L+     S   + A ++ + +    L  D   Y TLI    K G     
Sbjct: 227 VPNGV--TFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQA 284

Query: 143 ---VDAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
              +D M  + +KPD++ +  LI  C + G ++ AF+    M  E   +  D +   AL+
Sbjct: 285 HDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQE--NIRLDDVAYTALI 342

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                 G+   A +V + +    +K     YT+ IN   + GD      +  +M + G +
Sbjct: 343 SGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHV 402

Query: 259 PDEVFLSALID 269
           P  V  + L++
Sbjct: 403 PSVVTYNVLMN 413



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 101/234 (43%), Gaps = 19/234 (8%)

Query: 17  KHANYAHDVSEQLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
           K A +A  V   +++Y    N L ++ ++ +  +L ++M  KGL+     +       CK
Sbjct: 183 KSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCK 242

Query: 73  SQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
           S + +  A   +K + +    P L T+N L+       D + A  ++  +   GLK D  
Sbjct: 243 SGR-VDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 301

Query: 129 LYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
            YTTLI  C K G ++  F        EN++ D V + ALI+   Q G    A  VL EM
Sbjct: 302 TYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREM 361

Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
            +    + PD  T   ++      G V    ++ K + +     +   Y + +N
Sbjct: 362 LSA--GLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMN 413


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/422 (21%), Positives = 176/422 (41%), Gaps = 48/422 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK--EAFRFFKLVPNP 90
            +L R+ + SE + L   +  +G++  +  Y      +C +  A +  E  R    V  P
Sbjct: 27  TKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELVRELSGVYTP 86

Query: 91  TLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           TL  +N ++  +C +S+  + A++VL  + E  +  +   YT L+    +S K     E 
Sbjct: 87  TLFIYNGIITGLCRASRVMD-AYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREV 145

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD------------- 188
                    KP+ + +  LI    ++G +D A  V+ E  +   P D             
Sbjct: 146 FQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCK 205

Query: 189 --------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                               P+ +T   L+      G++DR    ++   K    G+ E 
Sbjct: 206 ASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEE-EKARKGGSLEA 264

Query: 229 --YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286
             Y   ++   + G  + A    +++ + GV+PD V  S LI+    AG+ +A+ E+L++
Sbjct: 265 AAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLED 324

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            +  G+   +++YS+L+      + +Q A  L E M++    P V T N+++  LC   +
Sbjct: 325 MRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGK 384

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
           + +   V   M      P+ +TYSI++    +   ++  + L    K     P+   +  
Sbjct: 385 MDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSM 444

Query: 407 II 408
           +I
Sbjct: 445 VI 446



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 160/372 (43%), Gaps = 20/372 (5%)

Query: 29  LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA--IKEAFR 82
           L  YN +I    R  R+ +   +LE M  + ++     Y      +C+S K    +E F+
Sbjct: 88  LFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQ 147

Query: 83  FFK---LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             K     PNP   T+  L+   + + + + A +V+   +   L  D    TT++    K
Sbjct: 148 EMKRNGCKPNPI--TYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCTTIVGGLCK 205

Query: 140 SGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           + ++D   +         V+P+ V ++ L+    Q G +DR      E  A         
Sbjct: 206 ASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGGSLEAA 265

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
              G L   C  AG +DRAR+  + + +  +      Y++ IN  ++ G ++ +  + +D
Sbjct: 266 AYPGYLDALC-KAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLED 324

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M + GV PD V  S LI+      K + AF +L+  +  G    +++Y+S+M     +  
Sbjct: 325 MRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGK 384

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
             +   +YE M   +  P V T + ++  L     L   +++   +KS    P+   YS+
Sbjct: 385 MDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSM 444

Query: 372 LLVACERKDDVE 383
           ++ +  R   +E
Sbjct: 445 VITSLCRAGKLE 456



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/373 (21%), Positives = 161/373 (43%), Gaps = 64/373 (17%)

Query: 116 RLVQEAGLKADCKLYTTLITTC---AKSGKVDAMFENVKPDRVVFNALITA------CGQ 166
           R V EAG+K D + +T L T     +K  +V  +F  +    VV+            CG 
Sbjct: 8   RSVVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCG- 66

Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
           +G  ++A +++ E++    P     I  G +   C  +  +D  + + KM+ +  +   P
Sbjct: 67  AGMANQALELVRELSGVYTPTL--FIYNGIITGLCRASRVMDAYKVLEKMVEESIV---P 121

Query: 227 EV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
            V  YTI +N   ++   + A  V+ +M + G  P+ +    LI     AG+++ A  ++
Sbjct: 122 NVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVM 181

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI------ 338
            E ++  +   +I+ ++++G    A     AL+  E M+ + ++P   T + L+      
Sbjct: 182 IEQRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQH 241

Query: 339 ------------------------------TALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                                          ALC    L +  + + +++  G+ P+ +T
Sbjct: 242 GELDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVT 301

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNE--- 423
           YS+L+    R    +  L LL   + +GV P++V +  +I  +C  R+++ A  L E   
Sbjct: 302 YSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELME 361

Query: 424 ------HVLSFNS 430
                 +V+++NS
Sbjct: 362 AAGSPPNVVTYNS 374


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 151/333 (45%), Gaps = 15/333 (4%)

Query: 90  PTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
           P + T N M+   C      E    V ++VQ AGL  D   YT+LI    ++  VDA   
Sbjct: 202 PNIFTLNTMVNGYCKLGNVVEAELYVSKIVQ-AGLSLDTFTYTSLILGYCRNKNVDAANA 260

Query: 146 MFENVKPDR------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +F ++ P++      V +  LI    ++  VD A  + ++M+ +     P   T   ++ 
Sbjct: 261 IFLSM-PNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHED--NCWPTVRTYTVIIF 317

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           A    G+   A  ++K + + + +     YT+ I    +  +++ A  + + M +KG+IP
Sbjct: 318 ALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIP 377

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
             V  +ALID     G   +A EIL   ++   S    +Y+ L+      KN  KA+ L 
Sbjct: 378 SVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLL 437

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M   KL+P V T N LI   C    L    ++LS M   GL P+  TYS+ +    ++
Sbjct: 438 HKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKR 497

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             VE    L    KE G+  N V++  +I G C
Sbjct: 498 GLVEEARSLFESLKEKGIKANEVIYSTLIDGYC 530



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 92/402 (22%), Positives = 166/402 (41%), Gaps = 25/402 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SY  LI       R+ E + L   M         + Y    F +C+  +   EA   FK 
Sbjct: 276 SYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRK-TEALNMFKE 334

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P + T+ +L+       + + A ++L  + E GL      Y  LI    K G 
Sbjct: 335 MTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGL 394

Query: 143 VDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
             +  E        N  P+   +N LI    +   + +A  +L +M      + P+ +T 
Sbjct: 395 SASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLER--KLQPNVVTY 452

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+      G +  A ++  ++++  +      Y++ I+   + G  E A S+++ + +
Sbjct: 453 NILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKE 512

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           KG+  +EV  S LID     GKV     +L +  + G     I+Y+SL+      KN+++
Sbjct: 513 KGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKE 572

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A  L + M    ++P   T   LI  L   D+  +  ++   M S G  P+   Y+  + 
Sbjct: 573 ARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIH 632

Query: 375 A-CE--RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           A C   R  D EV   L+ +    G++P+ +++   I    R
Sbjct: 633 AYCSHGRLKDAEV---LICKMNAKGIMPDTMLYTLFIDAYGR 671



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/428 (21%), Positives = 175/428 (40%), Gaps = 51/428 (11%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ---KAIKEAFRF 83
           +YN LI    ++G  +  +++L  ME        + Y+      C+ +   KA+    + 
Sbjct: 381 TYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKM 440

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            +    P + T+N+L+       D   A+++L L+ E+GL  D   Y+  I T  K G V
Sbjct: 441 LERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLV 500

Query: 144 D---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +   ++FE+     +K + V+++ LI    + G V     +L +M +      P+ IT  
Sbjct: 501 EEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSA--GCVPNSITYN 558

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           +L+           AR +  ++ K +I+   + YTI I+   +  +++ A  ++D M   
Sbjct: 559 SLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLST 618

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G  PD    +A I      G+++ A  ++ +   +GI    + Y+  + A     +   A
Sbjct: 619 GSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGA 678

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPK-------------------------- 349
             + + M  +  +P+  T + LI  L +    PK                          
Sbjct: 679 FGILKRMHEVGCEPSYYTYSCLIKHLSNAK--PKEVSSSSELSDLSSGVASNDFSNCWRR 736

Query: 350 -----TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
                T+++   M   G  PN  TY   +    +   +EV   L    KE G  PN  ++
Sbjct: 737 VDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIY 796

Query: 405 KCIIGMCS 412
             ++G CS
Sbjct: 797 NSLLG-CS 803



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 138/348 (39%), Gaps = 40/348 (11%)

Query: 86  LVPNPTLSTF-NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
           LVPN  L    NM + +  S+  SE A  VL +++                  + + +VD
Sbjct: 120 LVPNGYLRIAENMRILMIKSTDSSENALFVLEMLR------------------SMNRRVD 161

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           A     K     +N L+    +   +D    V  EM  ++  V P+  T+  ++      
Sbjct: 162 AF--KFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDM--VTPNIFTLNTMVNGYCKL 217

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G V  A      I +  +      YT  I    +  + + A +++  M  KG + +EV  
Sbjct: 218 GNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSY 277

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + LI     A +V+ A ++  +         + +Y+ ++ A        +AL +++ M  
Sbjct: 278 TNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTE 337

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
              +P V T   LI +LC+        ++L+ M   GL P+ +TY+ L+    +K     
Sbjct: 338 KHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSAS 397

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
            L +LS  + +   PN                 ART NE +L F  G+
Sbjct: 398 ALEILSLMESNNCSPN-----------------ARTYNELILGFCRGK 428



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 130/319 (40%), Gaps = 21/319 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           + G++S+   LL+ M   G +     Y++     CK +K  KEA     ++      P  
Sbjct: 531 KVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCK-EKNFKEARLLVDIMIKRDIEPAA 589

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMF---- 147
            T+ +L+       + + A  +   +   G   D  +YT  I      G++ DA      
Sbjct: 590 DTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICK 649

Query: 148 ---ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
              + + PD +++   I A G+ G++D AF +L  M+ EV   +P + T   L+K  +NA
Sbjct: 650 MNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMH-EV-GCEPSYYTYSCLIKHLSNA 707

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
               + +EV           +  V +   + C +  D+EF   ++  M + G  P+    
Sbjct: 708 ----KPKEVSSSSEL--SDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNANTY 761

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
              I      G +E A  +    K +G S     Y+SL+G       + +A+   + M  
Sbjct: 762 GKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIE 821

Query: 325 IKLKPTVSTMNALITALCD 343
            +  P + +   L+  L D
Sbjct: 822 NRHLPHLDSCKLLLCGLYD 840


>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 643

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 172/399 (43%), Gaps = 38/399 (9%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + +YN L+R      R+     +L++M RKG    D  Y      +CK  + + EA
Sbjct: 155 VHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDR-LDEA 213

Query: 81  FRFFKLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                 +P P  +++N +++++C   +  E  F V+  +   GL+ +   YTT++    K
Sbjct: 214 TEVLAAMP-PVAASYNAIVLALCREFRMQE-VFSVVSDMVGRGLQPNVITYTTIVDAFCK 271

Query: 140 SGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +G+                 L  AC           +LA M   +    P+ +T  AL++
Sbjct: 272 AGE-----------------LRMACA----------ILARM--VITGCTPNVVTFTALVR 302

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              + G+V  A ++++ +       +   Y I I      GD + A S+ + M + G  P
Sbjct: 303 GLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFP 362

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    S LID    AG +  A  I  +    G    ++ Y++++        + +A  L 
Sbjct: 363 NVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLI 422

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M      P   T N LI +LCD  ++ + + V  +M+  G  PN  TY+ L+    R+
Sbjct: 423 DKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFRE 482

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEK 417
            +    L ++++ +  G+  +LV +  ++ G+C  R  +
Sbjct: 483 GNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSR 521



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 74/326 (22%), Positives = 142/326 (43%), Gaps = 27/326 (8%)

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
           + V P+   +N L+ A  Q+  V  A  +L EM  +  P  PD +T   ++       ++
Sbjct: 153 DGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCP--PDDVTYATIVSVLCKLDRL 210

Query: 208 DRAREVYKMI----HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
           D A EV   +      YN         I +  C +    E   SV  DM  +G+ P+ + 
Sbjct: 211 DEATEVLAAMPPVAASYN--------AIVLALCREFRMQEVF-SVVSDMVGRGLQPNVIT 261

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + ++D    AG++  A  IL      G +  ++++++L+    +      AL+++  M 
Sbjct: 262 YTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMV 321

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           +    P+  + N LI  LC    L     +L+ M+  G  PN  TYS L+    +  D+ 
Sbjct: 322 AEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLG 381

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVL---------SFNSG- 431
             + + +     G  PN+V++  ++ +  ++  + +A++L + +L         +FN+  
Sbjct: 382 GAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLI 441

Query: 432 RPQIENKWTSLALMVYREAIVAGTIP 457
           R   + +    AL V+ E    G +P
Sbjct: 442 RSLCDCRRVGRALGVFHEMRRHGCVP 467


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 142/324 (43%), Gaps = 34/324 (10%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
           ++ T+N+ ++    SK    A +V R + E GLKAD   Y TL+    +           
Sbjct: 259 SIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRI---------- 308

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKACANAGQVD 208
                                + F+V  EM  E+  +   P    +  L++     G ++
Sbjct: 309 ---------------------QEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIE 347

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A E+   + K  +     VY   IN   +TG  E A  ++  M ++G+ P++V  + LI
Sbjct: 348 GAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILI 407

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           D  G   K++ AF    +    GIS  + SY+S++         + A  L++ M    LK
Sbjct: 408 DGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLK 467

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           PTV+T  +LI+  C    +PK  ++  +M   G+ PNT+T++ L+    + + +     L
Sbjct: 468 PTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKL 527

Query: 389 LSQAKEDGVIPNLVMFKCII-GMC 411
             +  E  ++PN V +  +I G C
Sbjct: 528 FDEMVELKILPNEVTYNVLIEGHC 551



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/410 (23%), Positives = 176/410 (42%), Gaps = 27/410 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
           +Y  LI    + G + +   L  +M  KG+      + A    +C+  K + EA + F  
Sbjct: 472 TYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINK-MAEASKLFDE 530

Query: 85  ----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
               K++PN    T+N+L+       ++  AF++L  + + GL  D   Y  LI     +
Sbjct: 531 MVELKILPNEV--TYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCST 588

Query: 141 GKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G+V        D   ++ + D + + AL+    + G +  A     EM      +  D +
Sbjct: 589 GRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGR--GLQMDLV 646

Query: 193 TIGALMKACANAGQVDRAR-EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +   L+    N  Q DR   E+ + +H   ++    +YTI I+   ++G+ + A   +  
Sbjct: 647 SYAVLISGALN--QNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYI 704

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M  +G +P+ V  +AL++    AG V  A  + +           I+Y   +   +   N
Sbjct: 705 MIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGN 764

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            + AL+L+  M       TV T N LI   C   +  +  ++L  M  +G+ P+ ITYS 
Sbjct: 765 MENALQLHNAMLQGSFANTV-TYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYST 823

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
            +    ++ +V+  + +     + G+ P+ V+F  +I  C    E  R L
Sbjct: 824 FIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRAL 873



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/437 (21%), Positives = 175/437 (40%), Gaps = 51/437 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
           LI+ G I    +LL  + + G++    VY++   ++CK+ K ++EA   F ++     NP
Sbjct: 340 LIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGK-LEEAELLFSVMAERGLNP 398

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMF 147
              T+ +L+         + AF     + E G+ A    Y ++I    K GK+   + +F
Sbjct: 399 NDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLF 458

Query: 148 EN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           +      +KP    + +LI+   + G V +AF +  EM  +   + P+ +T  AL+    
Sbjct: 459 KEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGK--GIAPNTVTFTALICGLC 516

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-- 260
              ++  A +++  + +  I      Y + I    + G+   A  + D+M KKG+ PD  
Sbjct: 517 QINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTY 576

Query: 261 ---------------------------------EVFLSALIDFAGHAGKVEAAFEILQEA 287
                                            E+  +AL+      G+++ A    QE 
Sbjct: 577 TYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEM 636

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
             +G+ + ++SY+ L+    N +N +   EL   M    ++P       LI        L
Sbjct: 637 VGRGLQMDLVSYAVLISGALN-QNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNL 695

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            K  E    M   G  PN++TY+ L+    +   V    +L  +      IPN + + C 
Sbjct: 696 KKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCF 755

Query: 408 IGMCSRRYEKARTLNEH 424
           +   ++       L  H
Sbjct: 756 LDHLTKEGNMENALQLH 772



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 149/346 (43%), Gaps = 29/346 (8%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S   ++Y  LI      GR+SE  + + D+  K     +  Y A     CK  + IKEA
Sbjct: 571 LSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGR-IKEA 629

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGA--------FQVLRLVQEAGLKADCKLYTT 132
                LV    +    + M + + +    GA        F++LR +   G++ D  +YT 
Sbjct: 630 -----LVARQEMVGRGLQMDLVSYAVLISGALNQNDRILFELLREMHGKGMQPDNVIYTI 684

Query: 133 LITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           LI    KSG +   FE           P+ V + AL+    ++G V+ A  +   M   V
Sbjct: 685 LIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRM--LV 742

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
               P+HIT G  +      G ++ A +++  + + +   T   Y I I    Q G ++ 
Sbjct: 743 GEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFANTV-TYNILIRGYCQIGKFQE 801

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A  + D M   G++PD +  S  I      G V+AA ++ +    +G+    + ++ L+ 
Sbjct: 802 AAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIH 861

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           AC       +AL+L   M    LKPT ST ++L+  L    +L + 
Sbjct: 862 ACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQRARLTQV 907



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 156/361 (43%), Gaps = 23/361 (6%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+G  +   +LL++M +KGL      Y      +C + + + EA  F   
Sbjct: 542 TYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGR-VSEAKEFIND 600

Query: 87  VPNP-----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           + +       L    +L   C   +  E       +V   GL+ D   Y  LI+  A + 
Sbjct: 601 LHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGR-GLQMDLVSYAVLISG-ALNQ 658

Query: 142 KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
               +FE         ++PD V++  LI    +SG + +AF+    M  E +   P+ +T
Sbjct: 659 NDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYV--PNSVT 716

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             AL+     AG V+ A+ ++K +           Y   ++  ++ G+ E A  +++ M 
Sbjct: 717 YTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAML 776

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + G   + V  + LI      GK + A ++L      G+    I+YS+ +       N  
Sbjct: 777 Q-GSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVD 835

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A++++E M    LKP     N LI A C   +L + +++ +DM   GL P   TY  L+
Sbjct: 836 AAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLM 895

Query: 374 V 374
           V
Sbjct: 896 V 896



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 86/392 (21%), Positives = 167/392 (42%), Gaps = 23/392 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPN 89
           N L +  R+ E +++   +  KGL      Y      +C+ Q+    ++      +L   
Sbjct: 268 NGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYV 327

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
           P+ +  + L+         EGAF++L  V + G+  +  +Y ++I +  K+GK++     
Sbjct: 328 PSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELL 387

Query: 145 --AMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEM-----NAEVHPVDPDHITIGA 196
              M E  + P+ V +  LI   G+   +D AF    +M     +A V+  +       +
Sbjct: 388 FSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYN-------S 440

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++      G++  A  ++K +    +K T   YT  I+   + G    A  +Y +MT KG
Sbjct: 441 MINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKG 500

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + P+ V  +ALI       K+  A ++  E     I    ++Y+ L+       N  +A 
Sbjct: 501 IAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAF 560

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           EL + M    L P   T   LI  LC   ++ +  E ++D+       + + Y+ LL   
Sbjct: 561 ELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGF 620

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            ++  ++  L+   +    G+  +LV +  +I
Sbjct: 621 CKEGRIKEALVARQEMVGRGLQMDLVSYAVLI 652



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 66/339 (19%), Positives = 135/339 (39%), Gaps = 25/339 (7%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+  T+ AL+ A A   +  +  E++  +    +K    +YT+ + C  +  D+  A  +
Sbjct: 188 PEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEI 247

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
            +     G     V  +  I+    + +V  A E+ +    +G+   +++Y +L+     
Sbjct: 248 INQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCR 307

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            + ++  +E+ + M  +   P+ + ++ LI  L     +    E+L+ +  LG+ PN   
Sbjct: 308 IQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFV 367

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSF 428
           Y+ ++ +  +   +E   +L S   E G+ PN V +  +I    RR +            
Sbjct: 368 YNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAK------------ 415

Query: 429 NSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVS 488
                        +A   + + I  G   TV   + ++ C        + E L + +   
Sbjct: 416 -----------LDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDK 464

Query: 489 ADALKRSNLCSLIDGFGE--YDPRAFSLLEEAASFGIVP 525
                 +   SLI G+ +    P+AF L  E    GI P
Sbjct: 465 GLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAP 503


>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 859

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/424 (20%), Positives = 171/424 (40%), Gaps = 27/424 (6%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           Y++DV   ++    L  +G I+ C+D  ++  +  L D      A  F     +   + +
Sbjct: 67  YSYDVETLINRITALPPRGSIARCLDPFKN--KLSLNDF-----ALVFKEFAQRGDWQRS 119

Query: 81  FRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
            R FK +       P    + +++++       +   +V   +   G+     +YT +I 
Sbjct: 120 LRLFKYMQRQIWCKPNEHIYTIMITLLGREGLLDKCREVFDEMPSNGVARTVYVYTAVIN 179

Query: 136 TCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGA-VDRAFDVLAEMNAEVHP 186
              ++G+  A  E         V P  + +N +I AC + G   +    + AEM  E   
Sbjct: 180 AYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHE--G 237

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + PD IT   L+ ACA+ G  D A  V++ +++  I      Y+  +    +    E   
Sbjct: 238 IQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVS 297

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +  +M   G +PD    + L++     G ++ A ++ ++ +  G      +YS L+   
Sbjct: 298 ELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLY 357

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
                +    +++  MK     P   T N LI    +G    + + +  DM    + PN 
Sbjct: 358 GKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNM 417

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL 426
            TY  L+ AC +    E    +L    E G++P+   +  +I      + +A    E ++
Sbjct: 418 ETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVI----EAFGQAALYEEALV 473

Query: 427 SFNS 430
            FN+
Sbjct: 474 VFNT 477



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 145/332 (43%), Gaps = 11/332 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P + T+N L+  CA     + A  V R + E+G+  D   Y+ L+ T  K  +++ + E 
Sbjct: 240 PDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSEL 299

Query: 150 VK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           ++        PD   +N L+ A  + G++  A DV  +M A       +  T   L+   
Sbjct: 300 LREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAA--GCVANAATYSVLLNLY 357

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+ D  R+++  +   N       Y I I    + G ++   +++ DM ++ V P+ 
Sbjct: 358 GKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEENVEPNM 417

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
                LI   G  G  E A +IL     +GI     +Y+ ++ A   A  +++AL ++  
Sbjct: 418 ETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNT 477

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M  +   PTV T N+ I A   G    +   +LS M   GL  +  +++ ++ A  +   
Sbjct: 478 MNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQ 537

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGM-CS 412
            E  +    + ++    PN +  + ++ + CS
Sbjct: 538 YEEAVKSYVEMEKANCEPNELTLEVVLSVYCS 569



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 132/299 (44%), Gaps = 10/299 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P ++++N+L+   A     + A  V R +Q AG  A+   Y+ L+    K G+ D + + 
Sbjct: 310 PDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDI 369

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  N  PD   +N LI   G+ G       +  +M  E   V+P+  T   L+ AC
Sbjct: 370 FLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEE--NVEPNMETYEGLIFAC 427

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G  + A+++   +++  I  + + YT  I    Q   +E A  V++ M + G  P  
Sbjct: 428 GKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEALVVFNTMNEVGSNPTV 487

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++ I      G  + A  IL      G+   + S++ ++ A      +++A++ Y  
Sbjct: 488 ETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIKAFRQGGQYEEAVKSYVE 547

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
           M+    +P   T+  +++  C    + ++ E   ++K+ G+ P+ + Y ++L    + D
Sbjct: 548 MEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCYCLMLALYAKND 606



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 86/421 (20%), Positives = 160/421 (38%), Gaps = 54/421 (12%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           + ++ +L R  ++SE   LL +ME  G L  D   +           +IKEA   F+ + 
Sbjct: 284 VQTFGKLNRLEKVSE---LLREMESGGNLP-DITSYNVLLEAYAELGSIKEAMDVFRQMQ 339

Query: 89  NP----TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV- 143
                   +T+++L+++       +    +   ++ +    D   Y  LI    + G   
Sbjct: 340 AAGCVANAATYSVLLNLYGKHGRYDDVRDIFLEMKVSNTDPDAGTYNILIQVFGEGGYFK 399

Query: 144 -------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                  D + ENV+P+   +  LI ACG+ G  + A  +L  MN +   + P       
Sbjct: 400 EVVTLFHDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEK--GIVPSSKAYTG 457

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS------------------- 237
           +++A   A   + A  V+  +++     T E Y   I+  +                   
Sbjct: 458 VIEAFGQAALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESG 517

Query: 238 ----------------QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
                           Q G +E A   Y +M K    P+E+ L  ++     AG V+ + 
Sbjct: 518 LKRDVHSFNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESE 577

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           E  QE K  GI   ++ Y  ++   +       A  L + M ++++      +  +I   
Sbjct: 578 EQFQEIKASGILPSVMCYCLMLALYAKNDRLNDAYNLIDEMITMRVSDIHQGIGQMIKGD 637

Query: 342 CDGDQLPKTMEVLSD-MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
            D +   + +E + D + S G       Y+ LL A       E    +L++A + G+ P 
Sbjct: 638 FDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWWMFQRERAARVLNEASKRGLFPE 697

Query: 401 L 401
           L
Sbjct: 698 L 698



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 57/298 (19%), Positives = 113/298 (37%), Gaps = 32/298 (10%)

Query: 18  HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
           H     +V   + +Y  LI    + G   +   +L  M  KG++   K Y          
Sbjct: 406 HDMVEENVEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTG-VIEAFGQ 464

Query: 74  QKAIKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL 129
               +EA   F  +     NPT+ T+N  +   A     + A  +L  + E+GLK D   
Sbjct: 465 AALYEEALVVFNTMNEVGSNPTVETYNSFIHAFARGGLYKEAEAILSRMNESGLKRDVHS 524

Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
           +  +I    + G+ +   +        N +P+ +    +++    +G VD + +   E+ 
Sbjct: 525 FNGVIKAFRQGGQYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIK 584

Query: 182 AEVHPVDPDHITIGALMKAC---ANAGQVDRAREVYKMIHKYNIKGTPEVYT----IAIN 234
           A           + ++M  C   A   + DR  + Y +I +       +++     +   
Sbjct: 585 ASG--------ILPSVMCYCLMLALYAKNDRLNDAYNLIDEMITMRVSDIHQGIGQMIKG 636

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
                 +W+    V+D +  +G      F +AL++      + E A  +L EA  +G+
Sbjct: 637 DFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWWMFQRERAARVLNEASKRGL 694


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 191/418 (45%), Gaps = 35/418 (8%)

Query: 152 PDRVVFNALITACGQSGAV-DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
           P  + F  L++A  + G   D    +  +M  E+  + P+  T+  L+   ++  +VD A
Sbjct: 95  PCIIQFTKLLSAIVKMGQYYDTVISLTKQM--ELAGLSPNIYTLSILINCFSHLQRVDLA 152

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
             V   I K  ++ T   +T  IN   + G +  A  ++DDM  +G  PD    + +I+ 
Sbjct: 153 FSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIING 212

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G+  AA  +L++ +  G    +++YS+++ +    +   +AL+++ +MK   + P 
Sbjct: 213 LCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPD 272

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
           + T N+LI  LC+  Q  +   +L++M+SL + P+ +T+++L+    ++  V     +L 
Sbjct: 273 IFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLK 332

Query: 391 QAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNE---------HVLSFN---SGRPQIE 436
              E GV P++V +  ++   S R E  +AR L +          V S+N   +G  ++ 
Sbjct: 333 TMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKV- 391

Query: 437 NKWTSLALMVYREAIVAGTIP-TVEVVSKVLGCLQLPYNADIRE--RLVENLGVSADALK 493
            K    A  ++ E I  G  P  V   + + G  QL     +RE   L +N+  + +   
Sbjct: 392 -KRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQL---GSLREARNLFKNMHTNGNLPN 447

Query: 494 RSNLCSLIDGFGE--YDPRAFSLLEEAASFGIVPCVSFKEIPV--------VVDARKL 541
                 L+DGF +  Y  +AF L     S    P +    I +        + DARKL
Sbjct: 448 LFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKL 505



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 155/339 (45%), Gaps = 17/339 (5%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
           +P + T ++L++  +  +  + AF VL  + + GL+     +TTLI    K GK      
Sbjct: 130 SPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAME 189

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              D +    +PD   +  +I    + G    A  +L +M  E     P+ +T   ++ +
Sbjct: 190 LFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKM--EEAGCQPNVVTYSTIIDS 247

Query: 201 CANAGQVDRAREVYKMIHKYNIKG-TPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGV 257
                +V+ A +++  +    +KG +P+++T    I        W+ A ++ ++M    +
Sbjct: 248 HRKDRRVNEALDIFSYM---KVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNI 304

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
           +PD V  + L+D     GKV  A  +L+     G+   +++YSSLM   S      +A +
Sbjct: 305 MPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARK 364

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           L++ M +   KP V + N LI   C   ++ +  ++ ++M   GL PN ++Y+ L+    
Sbjct: 365 LFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLC 424

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY 415
           +   +     L      +G +PNL  +  ++ G C + Y
Sbjct: 425 QLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGY 463



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 161/387 (41%), Gaps = 13/387 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
           N L + G+ ++ ++L +DM  +G       Y      +CK  +    A    K+      
Sbjct: 176 NWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQ 235

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT---TCAKSGKVDAM 146
           P + T++ ++      +    A  +   ++  G+  D   Y +LI      ++  +  A+
Sbjct: 236 PNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASAL 295

Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  N+ PD V FN L+    + G V  A  VL  M      V+PD +T  +LM   
Sbjct: 296 LNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTE--MGVEPDVVTYSSLMYGY 353

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           +   +V  AR+++  +     K     Y I IN   +    + A  ++++M  +G+ P+ 
Sbjct: 354 SLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNN 413

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LI      G +  A  + +     G    + +YS L+        + KA  L+  
Sbjct: 414 VSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRA 473

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+S   KP +   N LI A+C    L    ++ S++   GL PN   Y+ ++    ++  
Sbjct: 474 MQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGL 533

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
           ++  L      +EDG  P+ + +  II
Sbjct: 534 LDEALEAFRNMEEDGCPPDEISYNVII 560


>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
          Length = 766

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 103/443 (23%), Positives = 179/443 (40%), Gaps = 54/443 (12%)

Query: 23  HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK 78
           H V+   ++YN LI    R+    E   + ++M+  G  + DKV      +V    +   
Sbjct: 219 HGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKASGF-EPDKVTFNSLLDVYGKARRHD 277

Query: 79  EAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           EA    + +      P++ T+N L+S        E A  + + ++  G+K D   YTTLI
Sbjct: 278 EAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLI 337

Query: 135 TTCAKSGKVDA-------MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
           +   ++GK+DA       M  N  KP+   +NALI   G  G       V  E  +    
Sbjct: 338 SGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSA--G 395

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
             PD +T   L+      G       V+K + K       + Y   I+  S+ G ++ A 
Sbjct: 396 FVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDLAM 455

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +Y  M + G+ PD    +A++      G+ E A ++  E + +       SYSSL+ A 
Sbjct: 456 QIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAY 515

Query: 307 SNAKNWQKALELYEHMKSIKLKP-----------------------------------TV 331
           +NAK   K   L + + S +++P                                    +
Sbjct: 516 ANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDI 575

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
           + +NA+++       + K  ++LS MK   +  +  TY+ L+    R  D E    +L++
Sbjct: 576 NVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTE 635

Query: 392 AKEDGVIPNLVMFKCIIGMCSRR 414
            K  GV P+   +  +I    R+
Sbjct: 636 IKSSGVRPDRYSYNTVIYAYGRK 658



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 149/356 (41%), Gaps = 13/356 (3%)

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           + EA       P P    +  L+S  + +     A  V R + ++G++     Y  ++  
Sbjct: 139 LAEASALLDAAPGPDAGAYTALVSAFSRAGRFRDAVAVFRRMVDSGVQPAIVTYNVVLHV 198

Query: 137 CAKSGK--------VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
            +K           V +M E+ V PDR  +N LI+ C +      A  V  EM A     
Sbjct: 199 YSKMAVPWKEVVELVASMKEHGVAPDRYTYNTLISCCRRRALYKEAAQVFDEMKAS--GF 256

Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           +PD +T  +L+     A + D A EV + + +     +   Y   I+   + G  E A +
Sbjct: 257 EPDKVTFNSLLDVYGKARRHDEAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVA 316

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +  +M  KG+ PD V  + LI     AGK++AA     E    G    + +Y++L+    
Sbjct: 317 LKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHG 376

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
               + + + +++  +S    P + T N L+          +   V  +MK  G  P   
Sbjct: 377 VRGKFPEMMAVFDEFRSAGFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERD 436

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 421
           TY  L+ +  R    ++ + +  +  E G+ P++  +  ++   +R  R+E+A  L
Sbjct: 437 TYVSLISSYSRCGLFDLAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKL 492



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 172/396 (43%), Gaps = 28/396 (7%)

Query: 35  LIRQGRISECIDLLEDMERKG----------LLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
           L R G+I   I   ++M R G          L+ M  V   +F        A+ + FR  
Sbjct: 340 LDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGV-RGKF----PEMMAVFDEFRSA 394

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
             VP+  + T+N L++V   +        V + +++AG   +   Y +LI++ ++ G  D
Sbjct: 395 GFVPD--IVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFD 452

Query: 145 --------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                    M   + PD   +NA+++A  + G  ++A  + AEM  E     PD  +  +
Sbjct: 453 LAMQIYKRMMEAGIYPDVSTYNAVLSALARGGRWEQAEKLFAEM--EERDCKPDEYSYSS 510

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ A ANA ++D+ + +   I+   I+    +    +   S+  +   A   + ++ +K 
Sbjct: 511 LLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKR 570

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
              D   L+A++   G    V    +IL   K   I++   +Y+SLM   S   + +K  
Sbjct: 571 CSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCE 630

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            +   +KS  ++P   + N +I A     Q+ +   + S+MK  GL P+ +TY+I + + 
Sbjct: 631 NILTEIKSSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSY 690

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
                 E  + L+      G  PN   +  I+ G C
Sbjct: 691 VSNSMFEEAIELVRYMVTQGCKPNERTYNSIVEGYC 726



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/279 (19%), Positives = 122/279 (43%), Gaps = 10/279 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--- 146
           P +ST+N ++S  A     E A ++   ++E   K D   Y++L+   A + ++D M   
Sbjct: 468 PDVSTYNAVLSALARGGRWEQAEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKAL 527

Query: 147 -----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                 E ++P   +   L+    +   +  A     E+  +   +D +   + A++   
Sbjct: 528 SDDIYSERIEPHNWLVKTLVLVNSKVNNLAEAEKAFLELRQKRCSLDIN--VLNAMVSIY 585

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
                V +  ++  ++ +  I  +   Y   ++  S+ GD E   ++  ++   GV PD 
Sbjct: 586 GKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIKSSGVRPDR 645

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              + +I   G  G+++ A  +  E K  G+   +++Y+  + +  +   +++A+EL  +
Sbjct: 646 YSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRY 705

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           M +   KP   T N+++   C   +L      +S++  L
Sbjct: 706 MVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNLPQL 744


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 151/347 (43%), Gaps = 42/347 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           +IR G+++   ++ ++M R+G                               VP PT+ T
Sbjct: 254 MIRSGKLASARNMFDEMLRRG-------------------------------VP-PTVVT 281

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DA--MFE--- 148
           FN LMS    + D   A  +  L+ +AG+  D   Y   +    K+G++ DA  MFE   
Sbjct: 282 FNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMR 341

Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
              V P+ VVF  LI A  + G V    ++  EM      +  D +   AL         
Sbjct: 342 ERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREM--ATRGIKTDLVAYNALANGLCRVRD 399

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           +  A ++ + +    +K     YT  I+   + G+ + A  +  +M+ +GV  DEV  + 
Sbjct: 400 LKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTT 459

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
           LI     +G+   +  IL E    G+     +Y+ ++ A     + +   +L + M++  
Sbjct: 460 LISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKG 519

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            KP V T N ++   C   Q+     +L+ M ++G+CP+ ITY+ILL
Sbjct: 520 RKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILL 566



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 144/301 (47%), Gaps = 11/301 (3%)

Query: 120 EAGLKADCKLYTTLITTCAKSGKVDA---MFE-----NVKPDRVVFNALITACGQSGAVD 171
           +AG+  + K +  L+    +SGK+ +   MF+      V P  V FN L++   ++  ++
Sbjct: 237 DAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLN 296

Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
            A + L  + A+   V PD  T GA M+    AG++  A E+++ + +  +     V+T 
Sbjct: 297 SA-NALRGLMAKAG-VAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTT 354

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            I+   + G+      ++ +M  +G+  D V  +AL +       ++AA +I++E +N G
Sbjct: 355 LIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNG 414

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
           +    ++Y++L+           A+E+ + M    +     T   LI+ L    +   + 
Sbjct: 415 LKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSE 474

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
            +L +M   GL P+  TY++++ A  +  DV+ G  LL + +  G  P +V +  ++ G 
Sbjct: 475 RILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGF 534

Query: 411 C 411
           C
Sbjct: 535 C 535



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 109/227 (48%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           V P+      LM+    +G++  AR ++  + +  +  T   +   ++   +  D   A 
Sbjct: 240 VPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSAN 299

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           ++   M K GV PD     A +     AG+++ A E+ +E + +G++   + +++L+ A 
Sbjct: 300 ALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAH 359

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
               N    LEL+  M +  +K  +   NAL   LC    L    +++ +M++ GL P+ 
Sbjct: 360 CKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDK 419

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
           +TY+ L+    ++ ++++ + +  +  ++GV  + V +  +I   S+
Sbjct: 420 VTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSK 466



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 1/175 (0%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A + Y  +   GV P+    + L+     +GK+ +A  +  E   +G+   ++++++LM 
Sbjct: 228 AYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMS 287

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
               A +   A  L   M    + P V T  A +  LC   ++   +E+  +M+  G+ P
Sbjct: 288 GMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNP 347

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKA 418
           NT+ ++ L+ A  ++ +V  GL L  +    G+  +LV +  +  G+C  R  KA
Sbjct: 348 NTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKA 402



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 3/155 (1%)

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           ++GV    V L A  D       V  A+    +  + G+      ++ LM     +    
Sbjct: 205 RRGV---RVPLPAWSDLMNRLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLA 261

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            A  +++ M    + PTV T N L++ +C    L     +   M   G+ P+  TY   +
Sbjct: 262 SARNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFM 321

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
               +   ++  + +  + +E GV PN V+F  +I
Sbjct: 322 QGLCKAGRIQDAVEMFEEMRERGVNPNTVVFTTLI 356


>gi|302821405|ref|XP_002992365.1| hypothetical protein SELMODRAFT_430583 [Selaginella moellendorffii]
 gi|300139781|gb|EFJ06515.1| hypothetical protein SELMODRAFT_430583 [Selaginella moellendorffii]
          Length = 704

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 162/358 (45%), Gaps = 21/358 (5%)

Query: 33  NRLIRQGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF---KLVP 88
           N  IR+   +   + +LE+ +  G+   ++  +A     C+     + A   +   K   
Sbjct: 83  NEAIRKAESVPGALKILEETKAAGVHTPNEATYASLMLACRKLGQGERALTIYEAMKQTK 142

Query: 89  NP-TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
            P ++ T+N L+S C  +   + AF+V + ++EAG+K D   YT+LI T  +S ++    
Sbjct: 143 EPISIRTYNTLISCCQQALRMDDAFRVKKELEEAGVKPDVVTYTSLIDTVIRSTRIPP-- 200

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
                 R    +++  C     +++A  +  EM  +   + PD  T   L++A   A   
Sbjct: 201 ----AQRFCDKSIVETC----RLEKALQLYKEM--QTLSITPDSKTYNTLIQAAGEAKAT 250

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           ++A E+Y+ + K  +      + + + C    G  + A  VY++    G+       + L
Sbjct: 251 EKALELYQSLTKVGLSANSFTFDLLLKCLGSGGRLKVALQVYNEARAAGITLYTSTYNFL 310

Query: 268 IDFAGHAGK--VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
           I     A +   E A+   +E K++ + V  +++ +L+ A S A +    ++ ++ MK +
Sbjct: 311 IGACATAPQPNAERAWAFYEEMKSKNLKVNALTFINLISASSKAADNAGVMKAFQLMKEL 370

Query: 326 KLKP--TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
                 T +T N ++ +    + L   +++  +MK  G  PN  TYS L+ AC R  D
Sbjct: 371 DYTKSITTTTYNQILESASIANTLEDALKIYYEMKKAGYKPNVSTYSSLISACIRNKD 428



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/388 (25%), Positives = 167/388 (43%), Gaps = 51/388 (13%)

Query: 163 ACGQSGAVDRAFDVLAEMNAE-VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
           A  ++ +V  A  +L E  A  VH   P+  T  +LM AC   GQ +RA  +Y+ + +  
Sbjct: 85  AIRKAESVPGALKILEETKAAGVHT--PNEATYASLMLACRKLGQGERALTIYEAMKQTK 142

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV---- 277
              +   Y   I+CC Q    + A  V  ++ + GV PD V  ++LID    + ++    
Sbjct: 143 EPISIRTYNTLISCCQQALRMDDAFRVKKELEEAGVKPDVVTYTSLIDTVIRSTRIPPAQ 202

Query: 278 -------------EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
                        E A ++ +E +   I+    +Y++L+ A   AK  +KALELY+ +  
Sbjct: 203 RFCDKSIVETCRLEKALQLYKEMQTLSITPDSKTYNTLIQAAGEAKATEKALELYQSLTK 262

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER--KDDV 382
           + L     T + L+  L  G +L   ++V ++ ++ G+   T TY+ L+ AC    + + 
Sbjct: 263 VGLSANSFTFDLLLKCLGSGGRLKVALQVYNEARAAGITLYTSTYNFLIGACATAPQPNA 322

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL-------------SFN 429
           E       + K   +  N + F  +I   S+  + A  +    L             ++N
Sbjct: 323 ERAWAFYEEMKSKNLKVNALTFINLISASSKAADNAGVMKAFQLMKELDYTKSITTTTYN 382

Query: 430 S--GRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVL-GCLQLPYNADIR------ER 480
                  I N     AL +Y E   AG  P V   S ++  C++   N D +      E 
Sbjct: 383 QILESASIANTLED-ALKIYYEMKKAGYKPNVSTYSSLISACIR---NKDFKQAQTLEEE 438

Query: 481 LVENLGVSADALKRSNLCSLIDGFGEYD 508
             +N+ VS   L +S L SLI  +G+ D
Sbjct: 439 EFKNVDVS---LNQSVLHSLIRAYGDAD 463


>gi|298712189|emb|CBJ33061.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 531

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 154/342 (45%), Gaps = 17/342 (4%)

Query: 60  DKVYHARFFNVCKS----QKAIKEAFRFFKLVPNPTLSTFNMLMSV-CASSKDSEGAFQV 114
           +  ++ R    C+     QKA++      ++   P +  ++ ++SV C SS  ++     
Sbjct: 177 NNFFYGRVIMACRRAGQWQKALEVLREMSRVGLAPDIFCYDTVISVACMSSVGAQWKIAR 236

Query: 115 LRLVQEAGLKADCKL--YTTLITTCAKSGK-------VDAMF-ENVKPDRVVFNALITAC 164
             L ++A     C L  Y  +++ C K+G+       + AM      PD + +N  I+AC
Sbjct: 237 DLLREQAKTGVPCSLISYNLVLSACKKAGRPRQAVSLLRAMRGHGCSPDVISYNTAISAC 296

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
            +    + A  VL +M      ++P+  + G+++  CA  G+VD+A  ++  + +  +K 
Sbjct: 297 VKRREWELALFVLRDMQRPDSRLEPNTYSYGSVITVCATCGEVDQAVGLFDEMPEAGVKV 356

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
               Y       ++ G W  A S   DM++ G + D V  +A I   G AG+ + A  +L
Sbjct: 357 DAFTYNSVAMAYARDGRWRQAISTLSDMSELGHVGDVVSYTAAIRACGWAGECDRALSLL 416

Query: 285 QEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHM-KSIKLKPTVSTMNALITALC 342
           +E + + G+     ++++ + AC +   W++ LEL   M +S    P      + I A  
Sbjct: 417 REMREEKGVKPNEKTFAAAISACGHGGRWERGLELLSEMPRSTGFLPDADCYTSAIKACG 476

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
            G Q  +   +L +  + G  P+  TY    V+     +V++
Sbjct: 477 KGGQWEQAFTLLREAAAEGTTPDAKTYEFHRVSSPSSPEVKL 518



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 168/433 (38%), Gaps = 61/433 (14%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN  I    R+ R  E + LL DM   GL+     Y A     C        A R  + 
Sbjct: 75  SYNTAISACARRDRFEEALRLLRDMPSVGLVPDGWSYGA-TLGACAGTGQASTALRLLRE 133

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEG-------------------------------- 110
           +       T S +   +  C  SK  E                                 
Sbjct: 134 MEERGIEATASNYKHALYACCDSKTGENWEAAAALLRRSETLRNNFFYGRVIMACRRAGQ 193

Query: 111 ---AFQVLRLVQEAGLKADCKLYTTLITTCAKSG-------KVDAMFENVKP----DRVV 156
              A +VLR +   GL  D   Y T+I+    S          D + E  K       + 
Sbjct: 194 WQKALEVLREMSRVGLAPDIFCYDTVISVACMSSVGAQWKIARDLLREQAKTGVPCSLIS 253

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
           +N +++AC ++G   +A  +L  M    H   PD I+    + AC    + + A  V + 
Sbjct: 254 YNLVLSACKKAGRPRQAVSLLRAMRG--HGCSPDVISYNTAISACVKRREWELALFVLRD 311

Query: 217 IHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
           + + + +  P  Y+    I  C+  G+ + A  ++D+M + GV  D    +++       
Sbjct: 312 MQRPDSRLEPNTYSYGSVITVCATCGEVDQAVGLFDEMPEAGVKVDAFTYNSVAMAYARD 371

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTVST 333
           G+   A   L +    G    ++SY++ + AC  A    +AL L   M+  K +KP   T
Sbjct: 372 GRWRQAISTLSDMSELGHVGDVVSYTAAIRACGWAGECDRALSLLREMREEKGVKPNEKT 431

Query: 334 MNALITALCDGDQLPKTMEVLSDM-KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
             A I+A   G +  + +E+LS+M +S G  P+   Y+  + AC +    E    LL +A
Sbjct: 432 FAAAISACGHGGRWERGLELLSEMPRSTGFLPDADCYTSAIKACGKGGQWEQAFTLLREA 491

Query: 393 KEDGVIPNLVMFK 405
             +G  P+   ++
Sbjct: 492 AAEGTTPDAKTYE 504



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/451 (21%), Positives = 191/451 (42%), Gaps = 36/451 (7%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLST 94
           G+   C++LL +    G  ++++V +    + C  +   +EA R  + +P+    P   +
Sbjct: 52  GQWQRCLELLGEAREWGT-ELNEVSYNTAISACARRDRFEEALRLLRDMPSVGLVPDGWS 110

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC--AKSGK----VDAMFE 148
           +   +  CA +  +  A ++LR ++E G++A    Y   +  C  +K+G+      A+  
Sbjct: 111 YGATLGACAGTGQASTALRLLREMEERGIEATASNYKHALYACCDSKTGENWEAAAALLR 170

Query: 149 NVKPDR--VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK-ACANA- 204
             +  R    +  +I AC ++G   +A +VL EM+     + PD      ++  AC ++ 
Sbjct: 171 RSETLRNNFFYGRVIMACRRAGQWQKALEVLREMSRV--GLAPDIFCYDTVISVACMSSV 228

Query: 205 -GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
             Q   AR++ +   K  +  +   Y + ++ C + G    A S+   M   G  PD + 
Sbjct: 229 GAQWKIARDLLREQAKTGVPCSLISYNLVLSACKKAGRPRQAVSLLRAMRGHGCSPDVIS 288

Query: 264 LSALIDFAGHAGKVEAAFEILQEAK--NQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
            +  I       + E A  +L++ +  +  +     SY S++  C+      +A+ L++ 
Sbjct: 289 YNTAISACVKRREWELALFVLRDMQRPDSRLEPNTYSYGSVITVCATCGEVDQAVGLFDE 348

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    +K    T N++  A     +  + +  LSDM  LG   + ++Y+  + AC    +
Sbjct: 349 MPEAGVKVDAFTYNSVAMAYARDGRWRQAISTLSDMSELGHVGDVVSYTAAIRACGWAGE 408

Query: 382 VEVGLMLLSQAKED-GVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIE-- 436
            +  L LL + +E+ GV PN   F   I  C    R+E+   L   +       P  +  
Sbjct: 409 CDRALSLLREMREEKGVKPNEKTFAAAISACGHGGRWERGLELLSEMPRSTGFLPDADCY 468

Query: 437 ----------NKWTSLALMVYREAIVAGTIP 457
                      +W   A  + REA   GT P
Sbjct: 469 TSAIKACGKGGQWEQ-AFTLLREAAAEGTTP 498



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/339 (20%), Positives = 141/339 (41%), Gaps = 15/339 (4%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           + ++A+   +    L   P + + +  ++ C  +   +   ++L   +E G + +   Y 
Sbjct: 18  RWREALGLLYHIRALGITPNVKSVSAALNACGQAGQWQRCLELLGEAREWGTELNEVSYN 77

Query: 132 TLITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
           T I+ CA+  + +     ++        PD   + A + AC  +G    A  +L EM  E
Sbjct: 78  TAISACARRDRFEEALRLLRDMPSVGLVPDGWSYGATLGACAGTGQASTALRLLREM--E 135

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
              ++         + AC ++   +       ++ +         Y   I  C + G W+
Sbjct: 136 ERGIEATASNYKHALYACCDSKTGENWEAAAALLRRSETLRNNFFYGRVIMACRRAGQWQ 195

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHA---GKVEAAFEILQEAKNQGISVGIISYS 300
            A  V  +M++ G+ PD      +I  A  +    + + A ++L+E    G+   +ISY+
Sbjct: 196 KALEVLREMSRVGLAPDIFCYDTVISVACMSSVGAQWKIARDLLREQAKTGVPCSLISYN 255

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
            ++ AC  A   ++A+ L   M+     P V + N  I+A     +    + VL DM+  
Sbjct: 256 LVLSACKKAGRPRQAVSLLRAMRGHGCSPDVISYNTAISACVKRREWELALFVLRDMQRP 315

Query: 361 G--LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397
              L PNT +Y  ++  C    +V+  + L  +  E GV
Sbjct: 316 DSRLEPNTYSYGSVITVCATCGEVDQAVGLFDEMPEAGV 354



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 109/268 (40%), Gaps = 38/268 (14%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           + P+  ++ A + AC  AGQ  R  E+     ++  +     Y  AI+ C++   +E A 
Sbjct: 34  ITPNVKSVSAALNACGQAGQWQRCLELLGEAREWGTELNEVSYNTAISACARRDRFEEAL 93

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +  DM   G++PD     A +      G+   A  +L+E + +GI     +Y   + AC
Sbjct: 94  RLLRDMPSVGLVPDGWSYGATLGACAGTGQASTALRLLREMEERGIEATASNYKHALYAC 153

Query: 307 SNAKN-----------------------------------WQKALELYEHMKSIKLKPTV 331
            ++K                                    WQKALE+   M  + L P +
Sbjct: 154 CDSKTGENWEAAAALLRRSETLRNNFFYGRVIMACRRAGQWQKALEVLREMSRVGLAPDI 213

Query: 332 STMNALITALC---DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
              + +I+  C    G Q     ++L +    G+  + I+Y+++L AC++       + L
Sbjct: 214 FCYDTVISVACMSSVGAQWKIARDLLREQAKTGVPCSLISYNLVLSACKKAGRPRQAVSL 273

Query: 389 LSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
           L   +  G  P+++ +   I  C +R E
Sbjct: 274 LRAMRGHGCSPDVISYNTAISACVKRRE 301



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 132/305 (43%), Gaps = 44/305 (14%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLA---EMNAEVHPVD----------------- 188
            + P+    +A + ACGQ+G   R  ++L    E   E++ V                  
Sbjct: 33  GITPNVKSVSAALNACGQAGQWQRCLELLGEAREWGTELNEVSYNTAISACARRDRFEEA 92

Query: 189 -------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
                        PD  + GA + ACA  GQ   A  + + + +  I+ T   Y  A+  
Sbjct: 93  LRLLRDMPSVGLVPDGWSYGATLGACAGTGQASTALRLLREMEERGIEATASNYKHALYA 152

Query: 236 C--SQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           C  S+TG+ WE A ++   + +   + +  F   +I     AG+ + A E+L+E    G+
Sbjct: 153 CCDSKTGENWEAAAAL---LRRSETLRNNFFYGRVIMACRRAGQWQKALEVLREMSRVGL 209

Query: 293 SVGIISYSSLMG-AC--SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           +  I  Y +++  AC  S    W+ A +L        +  ++ + N +++A     +  +
Sbjct: 210 APDIFCYDTVISVACMSSVGAQWKIARDLLREQAKTGVPCSLISYNLVLSACKKAGRPRQ 269

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS--QAKEDGVIPNLVMFKCI 407
            + +L  M+  G  P+ I+Y+  + AC ++ + E+ L +L   Q  +  + PN   +  +
Sbjct: 270 AVSLLRAMRGHGCSPDVISYNTAISACVKRREWELALFVLRDMQRPDSRLEPNTYSYGSV 329

Query: 408 IGMCS 412
           I +C+
Sbjct: 330 ITVCA 334



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 1/152 (0%)

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D  + + L+    H+ +   A  +L   +  GI+  + S S+ + AC  A  WQ+ LEL 
Sbjct: 3   DASYETCLVHLT-HSLRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQWQRCLELL 61

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
              +    +    + N  I+A    D+  + + +L DM S+GL P+  +Y   L AC   
Sbjct: 62  GEAREWGTELNEVSYNTAISACARRDRFEEALRLLRDMPSVGLVPDGWSYGATLGACAGT 121

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
                 L LL + +E G+      +K  +  C
Sbjct: 122 GQASTALRLLREMEERGIEATASNYKHALYAC 153



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 61/115 (53%)

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           SY + +   +++  W++AL L  H++++ + P V +++A + A     Q  + +E+L + 
Sbjct: 5   SYETCLVHLTHSLRWREALGLLYHIRALGITPNVKSVSAALNACGQAGQWQRCLELLGEA 64

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           +  G   N ++Y+  + AC R+D  E  L LL      G++P+   +   +G C+
Sbjct: 65  REWGTELNEVSYNTAISACARRDRFEEALRLLRDMPSVGLVPDGWSYGATLGACA 119


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/421 (22%), Positives = 191/421 (45%), Gaps = 24/421 (5%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI    + G + E   L  +M+  G +     Y+      CK +K +  A
Sbjct: 320 LSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK-MPRA 378

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           F +F  + N    P + T++ L+         +GA ++   ++  GL  +   YT+LI  
Sbjct: 379 FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDA 438

Query: 137 CAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K+G +        D +   VK + V + AL+    ++G +  A +V   M  +   + 
Sbjct: 439 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKD--GIS 496

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY-TIAINCCSQTGDWEFACS 247
           P+     AL+     A +++ A ++ K + + NIK    +Y +I    CSQ    E    
Sbjct: 497 PNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQR-KLEETKL 555

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           + ++M  +G+  + V  + +ID    AGK   A    QE ++ G+   I++Y  L+    
Sbjct: 556 ILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLC 615

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            A   + A++ +  M S+ L+P V+   +LI  LC  + +    ++  +M+  G+ P+  
Sbjct: 616 KAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDIT 675

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYEKARTLNEH 424
            ++ L+    +  +++  L+L+S+  E  +  +L ++  ++     C   ++  +  NE 
Sbjct: 676 AFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEM 735

Query: 425 V 425
           +
Sbjct: 736 I 736



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 155/331 (46%), Gaps = 11/331 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
           P++ T+N+++       D E + ++   ++E GL  D   Y +LI    K G   +V ++
Sbjct: 287 PSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASL 346

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F  +K     PD + +N LI    +   + RAF+  +EM    + + P+ +T   L+ A 
Sbjct: 347 FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKN--NGLKPNVVTYSTLIDAF 404

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G +  A +++  + +  +      YT  I+   + G+   A  + +DM + GV  + 
Sbjct: 405 CKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNI 464

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  +AL+D    AG++  A E+ +     GIS     Y++L+     A+  + A+++ + 
Sbjct: 465 VTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQ 524

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M    +KP +    ++I   C   +L +T  +L +MKS G+  N +  + ++ A  +   
Sbjct: 525 MTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGK 584

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
               L    + ++ GV   +V +  +I G+C
Sbjct: 585 SSDALNFFQEMQDVGVEATIVTYCVLIDGLC 615



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 148/328 (45%), Gaps = 12/328 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
           P   + N L+   + S + +   +    +  AG+      Y  +I    K G ++    +
Sbjct: 252 PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRL 311

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F  ++     PD V +N+LI   G+ G+++    +  EM  +V  V PD IT   L+   
Sbjct: 312 FVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMK-DVGCV-PDIITYNGLINCY 369

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               ++ RA E +  +    +K     Y+  I+   + G  + A  ++ DM + G++P+E
Sbjct: 370 CKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNE 429

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++LID    AG +  A+++L +    G+ + I++Y++L+     A    +A E++  
Sbjct: 430 FTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRS 489

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKD 380
           M    + P      AL+      +++   M++L  M    + P+ I Y SI+   C ++ 
Sbjct: 490 MLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRK 549

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             E  L +L + K  G+  N V+   II
Sbjct: 550 LEETKL-ILEEMKSRGISANPVISTTII 576



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 118/257 (45%), Gaps = 3/257 (1%)

Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
           VF+ L +   + G ++ A +  + M        P   +   L+   + +G     R+ + 
Sbjct: 221 VFDVLFSVFVELGLLEEANECFSRMRN--FRTLPKARSCNFLLHRLSKSGNGQLVRKFFN 278

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
            +    I  +   Y + I+   + GD E +  ++  M + G+ PD V  ++LID  G  G
Sbjct: 279 DMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVG 338

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
            +E    +  E K+ G    II+Y+ L+      +   +A E +  MK+  LKP V T +
Sbjct: 339 SLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYS 398

Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
            LI A C    +   +++  DM+  GL PN  TY+ L+ A  +  ++     LL+   + 
Sbjct: 399 TLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQA 458

Query: 396 GVIPNLVMFKCII-GMC 411
           GV  N+V +  ++ G+C
Sbjct: 459 GVKLNIVTYTALLDGLC 475



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 149/353 (42%), Gaps = 17/353 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIK--EAFR-F 83
           +Y  LI    + G ++E   LL DM + G+      Y A    +CK+ + I+  E FR  
Sbjct: 431 TYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSM 490

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K   +P    +  L+     ++  E A ++L+ + E  +K D  LY ++I       K+
Sbjct: 491 LKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKL 550

Query: 144 DA---MFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           +    + E +K      + V+   +I A  ++G    A +   EM      V+   +T  
Sbjct: 551 EETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDV--GVEATIVTYC 608

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            L+     AG V+ A + +  +    ++    VYT  I+   +    E A  ++D+M  +
Sbjct: 609 VLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCR 668

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G+ PD    +ALID     G ++ A  ++       I   +  Y+SL+   S      +A
Sbjct: 669 GMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQA 728

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            + +  M    + P       L+       QL + +E+ ++M+ +GL   + T
Sbjct: 729 RKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGLITESAT 781


>gi|449447683|ref|XP_004141597.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29290-like [Cucumis sativus]
          Length = 600

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 167/381 (43%), Gaps = 35/381 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
           L R+ ++   ++LL  M+  GLL      ++    + +++    +  R F+ +    LST
Sbjct: 159 LSRKNKVRSALELLRSMQLAGLLPSLHALNSLLACLLRNE-LFADGLRIFEFMKLNELST 217

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDR 154
            +    V  +  ++ G    L + +    +  C L               A F     D 
Sbjct: 218 GHTYSLVLKAVANAHGFLSALEMFK--AWEHQCVL---------------AQF-----DA 255

Query: 155 VVFNALITACGQSG---AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
           +V+N +I+ CG+       +R + ++     E +      IT   L+       Q + A 
Sbjct: 256 IVYNTMISICGKDNNWVEAERTWRLM-----EKNGCSATRITYSLLVSTFVRCNQNELAI 310

Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
           + Y  + + + K   +     I   S+ G W+FA  V+ DM K G+ P+ V  +ALI+  
Sbjct: 311 DTYVKMVQNSFKPGNDTMQAIIGASSKEGKWDFALRVFQDMLKCGLQPNSVSFNALINAL 370

Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
           G A +V  AF +    K+ G S  + ++++L+GA   A  +  A+ L+E +K  K++  +
Sbjct: 371 GKAKEVTLAFSVYNVMKSMGHSPDVYTWNALLGALYKANRYSDAIHLFEFVKREKVQLNI 430

Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM---- 387
              N ++ +        + +++L +M+  GL  +T +Y+I++ ACE     E+ L     
Sbjct: 431 HIYNTILMSCSKLGLWERAVQILWEMEVSGLSISTSSYNIVMTACEMARKPEIALQVYER 490

Query: 388 LLSQAKEDGVIPNLVMFKCII 408
           ++ Q        +L + +C I
Sbjct: 491 MVHQKHTPDTFTHLSLIRCCI 511



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/408 (19%), Positives = 170/408 (41%), Gaps = 27/408 (6%)

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----MFENVKPDRV----VFNALI 161
            A ++LR +Q AGL        +L+  C    ++ A    +FE +K + +     ++ ++
Sbjct: 167 SALELLRSMQLAGLLPSLHALNSLLA-CLLRNELFADGLRIFEFMKLNELSTGHTYSLVL 225

Query: 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
            A   +     A ++      +      D I    ++  C        A   ++++ K  
Sbjct: 226 KAVANAHGFLSALEMFKAWEHQCVLAQFDAIVYNTMISICGKDNNWVEAERTWRLMEKNG 285

Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
              T   Y++ ++   +    E A   Y  M +    P    + A+I  +   GK + A 
Sbjct: 286 CSATRITYSLLVSTFVRCNQNELAIDTYVKMVQNSFKPGNDTMQAIIGASSKEGKWDFAL 345

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
            + Q+    G+    +S+++L+ A   AK    A  +Y  MKS+   P V T NAL+ AL
Sbjct: 346 RVFQDMLKCGLQPNSVSFNALINALGKAKEVTLAFSVYNVMKSMGHSPDVYTWNALLGAL 405

Query: 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
              ++    + +   +K   +  N   Y+ +L++C +    E  + +L + +  G+  + 
Sbjct: 406 YKANRYSDAIHLFEFVKREKVQLNIHIYNTILMSCSKLGLWERAVQILWEMEVSGLSIST 465

Query: 402 VMFKCIIGMC--SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM-------VYREA-- 450
             +  ++  C  +R+ E A  + E ++     +    + +T L+L+       ++ E   
Sbjct: 466 SSYNIVMTACEMARKPEIALQVYERMVH----QKHTPDTFTHLSLIRCCIWGSLWDEVEL 521

Query: 451 IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRS 495
           ++  + P V V + V+  + L   +D+ ++L   +   G+  D   R+
Sbjct: 522 LLNKSAPDVSVYNVVIQGMCLRGKSDLAKKLYTKMRENGIQPDGKTRA 569


>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 860

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 139/303 (45%), Gaps = 45/303 (14%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKS---GKVDAMFENV-----KPDRVVFNALITACGQSG 168
           L ++ G K D   YTT++    ++   G ++ + + +     +P+ V +N LI + G++ 
Sbjct: 354 LKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRAN 413

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            ++ A +V  +M  +     PD +T   L+   A AG +D A ++Y+ +    +      
Sbjct: 414 YLNEAMNVFNQM--QEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFT 471

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y++ INC  + G    A  ++ +M  +G  P+ V  + ++D    A   ++A ++ ++ +
Sbjct: 472 YSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQ 531

Query: 289 NQGISVGIISYSSLM---GACS------------NAKNW--------------------Q 313
           N G     ++YS +M   G C               KNW                    +
Sbjct: 532 NAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVE 591

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           KA + Y+ M    L P V T N+L++     +++ +  E+L +M +LGL P+  TY++LL
Sbjct: 592 KAWQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLL 651

Query: 374 VAC 376
             C
Sbjct: 652 SCC 654



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 121/263 (46%), Gaps = 10/263 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P   T+N L+     +     A  V   +QEAG K D   Y TLI   AK+G +D    M
Sbjct: 397 PNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDM 456

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           ++ ++     PD   ++ +I   G++G +  A  +  EM  +     P+ +T   +M   
Sbjct: 457 YQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQ--GCTPNLVTYNIMMDLH 514

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           A A     A ++Y+ +     +     Y+I +      G  E A +V+ +M +K  IPDE
Sbjct: 515 AKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDE 574

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
                L+D  G AG VE A++  Q   + G+   + + +SL+          +A EL ++
Sbjct: 575 PVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQN 634

Query: 322 MKSIKLKPTVSTMNALITALCDG 344
           M ++ L+P++ T   L++   DG
Sbjct: 635 MLALGLRPSLQTYTLLLSCCTDG 657



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 84/201 (41%), Gaps = 3/201 (1%)

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
           Y +  +   K     YT  +    +   +     + D+M + G  P+ V  + LI   G 
Sbjct: 352 YWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGR 411

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
           A  +  A  +  + +  G     ++Y +L+   + A     A+++Y+ M++  L P   T
Sbjct: 412 ANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFT 471

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
            + +I  L     LP   ++  +M   G  PN +TY+I++    +  + +  L L    +
Sbjct: 472 YSVIINCLGKAGHLPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQ 531

Query: 394 EDGVIPNLVMFKC---IIGMC 411
             G  P+ V +     ++G C
Sbjct: 532 NAGFEPDKVTYSIVMEVLGHC 552


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 160/409 (39%), Gaps = 57/409 (13%)

Query: 58  DMDKVYHARFFNV-----CKSQK---AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109
           D DK     F NV     C++     A++E  R       P+ ST+N L+     +   +
Sbjct: 193 DDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLD 252

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-----ENVKPDRVVFNALITAC 164
            A  + R +  A L+ D         +  K GK          EN  PD V +  LI+  
Sbjct: 253 SASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGL 312

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
            ++   + A D L  M A      P+ +T   L+  C N  Q+ R + V  M+       
Sbjct: 313 CEASLFEEAMDFLNRMRAT--SCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYP 370

Query: 225 TPEVYTIAINCCSQTGDWEFA----------------------------------CSV-- 248
           +P+++   ++    +GD  +A                                  C +  
Sbjct: 371 SPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLD 430

Query: 249 -----YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
                Y +M   GV+ +++ +S+       AGK E AF +++E   QG      +YS ++
Sbjct: 431 LAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVL 490

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
               NA   + A  L+E MK   L   V T   ++ + C    + +  +  ++M+ +G  
Sbjct: 491 NYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCT 550

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           PN +TY+ L+ A  +   V     L      +G +PN+V +  +I G C
Sbjct: 551 PNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHC 599



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 200/476 (42%), Gaps = 44/476 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P  ST++ +++   ++   E AF +   ++  GL AD   YT ++ +  K+G ++     
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F  ++     P+ V + ALI A  ++  V  A ++   M +E     P+ +T  AL+   
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSE--GCLPNIVTYSALIDGH 598

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV------------------YTIAINCCSQTGDWE 243
             AGQV++A ++++ +     K  P+V                  Y   ++   ++   E
Sbjct: 599 CKAGQVEKACQIFERM--CGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVE 656

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  + D M+ +G  P+++   ALID     GK++ A E+  E    G    + +YSSL+
Sbjct: 657 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 716

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                 K    A ++   M      P V     +I  LC   +  +  +++  M+  G  
Sbjct: 717 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ 776

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTL 421
           PN +TY+ ++        +E  L LL +    GV PN V ++ +I  C +    + A  L
Sbjct: 777 PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNL 836

Query: 422 NE-----HVLSFNSG-RPQIE--NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPY 473
            E     H  +  +G R  IE  NK    +L +  E     T P + V   ++  L    
Sbjct: 837 LEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 896

Query: 474 NADIRERLVENLGVSADAL--KRSNLCSLIDG--FGEYDPRAFSLLEEAASFGIVP 525
             ++  RL+E +   +  L    S   SLI+          AF L  E    G++P
Sbjct: 897 RLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIP 952



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 166/397 (41%), Gaps = 56/397 (14%)

Query: 68  FNVCKSQKAIKEAFRFFK---LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           +++CK  K  +EA    +    VP+    T  ++  +C +S   E A   L  ++     
Sbjct: 278 YSLCKVGKW-REALTLVETENFVPDTVFYT-KLISGLCEASLFEE-AMDFLNRMRATSCL 334

Query: 125 ADCKLYTTLITTCAKSGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDV 176
            +   Y+TL+  C    ++          M E   P   +FN+L+ A   SG    A+ +
Sbjct: 335 PNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKL 394

Query: 177 LAEMNAEVHPVDPDHITIGALM------KACANAGQVDRAREVYK-------MIHKYNIK 223
           L +M    H   P ++    L+      K   N   +D A + Y        +++K N+ 
Sbjct: 395 LKKMVKCGHM--PGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVS 452

Query: 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                      C    G +E A SV  +M  +G IPD    S ++++  +A K+E AF +
Sbjct: 453 SFTR-------CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLL 505

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
            +E K  G+   + +Y+ ++ +   A   ++A + +  M+ +   P V T  ALI A   
Sbjct: 506 FEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 565

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-----------------CERKDDVEVGL 386
             ++    E+   M S G  PN +TYS L+                   C  KD  +V  
Sbjct: 566 AKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD- 624

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
           M   Q  ++   PN+V +  ++ G C S R E+AR L
Sbjct: 625 MYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKL 661



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 176/423 (41%), Gaps = 64/423 (15%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H+Y   ++  ++S   +L E M  +G L     Y A     CK+ + +++A + F+   
Sbjct: 560 IHAY---LKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQ-VEKACQIFE--- 612

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
                       +C S KD        +   +   + +   Y  L+    KS +V     
Sbjct: 613 -----------RMCGS-KDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 660

Query: 144 --DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             DAM  E  +P+++V++ALI    + G +D A +V  EM+    P      T  +L+  
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATL--YTYSSLIDR 718

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                + D A +V   + + +      +YT  I+   + G  + A  +   M +KG  P+
Sbjct: 719 YFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPN 778

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC-------------- 306
            V  +A+ID  G  GK+E   E+L+   ++G++   ++Y  L+  C              
Sbjct: 779 VVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838

Query: 307 --------SNAKNWQKALELY--EHMKSIKL---------KPTVSTMNALITALCDGDQL 347
                   ++   ++K +E +  E ++S+ L          P +S    LI  L    +L
Sbjct: 839 EMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRL 898

Query: 348 PKTMEVLSDMKSLG--LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
              + +L ++ +    L   + TY+ L+ +    + VE    L S+  + GVIP +  F 
Sbjct: 899 EMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFC 958

Query: 406 CII 408
            +I
Sbjct: 959 SLI 961



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 133/312 (42%), Gaps = 27/312 (8%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFK--LVPN 89
           L + G++ E  ++  +M   G       Y +   R+F V +   A K   +  +    PN
Sbjct: 684 LCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 743

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
             + T  M+  +C   K  E A++++++++E G + +   YT +I      GK++   E 
Sbjct: 744 VVIYT-EMIDGLCKVGKTDE-AYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE---VHPVDPDHITIGALM 198
                   V P+ V +  LI  C ++GA+D A ++L EM       H      +  G   
Sbjct: 802 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK 861

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM-TKKGV 257
           +   + G +D        I + +      VY + I+   +    E A  + +++ T    
Sbjct: 862 EFIESLGLLDE-------IGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSAT 914

Query: 258 IPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + D     ++LI+    A KVE AF++  E   +G+   + S+ SL+          +AL
Sbjct: 915 LVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEAL 974

Query: 317 ELYEHMKSIKLK 328
            L + +  ++++
Sbjct: 975 LLLDFISHMEIQ 986


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 157/335 (46%), Gaps = 17/335 (5%)

Query: 90  PTLSTFNMLMSV----CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD- 144
           P + +FN L++     CA+   S  A ++L  V + GL+ D   Y TLI+ C++   +  
Sbjct: 297 PDIVSFNTLINAKVKSCATV--SGLAIELLDEVGKFGLRPDIITYNTLISACSRESNLKE 354

Query: 145 --AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
              +F ++     +PD   +NA+I+  G+ G   +A  +  ++ +  +   PD +T  +L
Sbjct: 355 AIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKLKS--NGFSPDAVTYNSL 412

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           + A +  G  ++ R++ + + K         Y   I+   + G  + A  +Y DM   G 
Sbjct: 413 LYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRHDEALRLYRDMKSSGR 472

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            PD V  + LID  G A K+E A +++ E  + G+   + +YS+L+ A +      +A E
Sbjct: 473 NPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYAKVGRRVEAEE 532

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
            +  M+   +K      + ++      +++ K   +  +M   G  P+T  Y ++L A  
Sbjct: 533 TFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPDTGLYEVMLPALV 592

Query: 378 RKDDVEVGLMLLSQAKEDGVI-PNLVMFKCIIGMC 411
           R++  +V   ++   KE G + P+ +    + G C
Sbjct: 593 RENMGDVIERVVQDTKELGSMNPHDISSVLVKGGC 627



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 168/403 (41%), Gaps = 51/403 (12%)

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGK------VDAMFENVKPDRV-VFNALITACGQSG- 168
           L  +     + ++  T+++   K+ +      + A  E+V  D V V+NA++    ++G 
Sbjct: 220 LTMQQWYATNARMVATILSVLGKANQEGIAVEIFAKAESVIADTVQVYNAMMGVYARNGN 279

Query: 169 --AVDRAFDVLAEMNAEVHPVDPDHIT----IGALMKACANAGQVDRAREVYKMIHKYNI 222
              V+  F+++ E   E     PD ++    I A +K+CA    +  A E+   + K+ +
Sbjct: 280 FEKVNEMFNLMRERGCE-----PDIVSFNTLINAKVKSCATVSGL--AIELLDEVGKFGL 332

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           +     Y   I+ CS+  + + A  V+  M      PD    +A+I   G  G    A  
Sbjct: 333 RPDIITYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEH 392

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           + ++ K+ G S   ++Y+SL+ A S   N +K  ++ E M  +       T N +I    
Sbjct: 393 LFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYG 452

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
              +  + + +  DMKS G  P+ +TY++L+    +   +E    ++S+  + GV P L 
Sbjct: 453 KHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLH 512

Query: 403 MFK---CIIGMCSRRYEKARTLN------------------EHVLSFNSGRPQIENKWTS 441
            +    C      RR E   T N                  +  L FN  +         
Sbjct: 513 TYSALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKK-------- 564

Query: 442 LALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN 484
            A  +Y+E I AG  P   +   +L  L      D+ ER+V++
Sbjct: 565 -AAALYQEMIEAGFTPDTGLYEVMLPALVRENMGDVIERVVQD 606



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 99/434 (22%), Positives = 171/434 (39%), Gaps = 58/434 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    R+  + E I +   ME          Y+A      +   A+K    F KL
Sbjct: 338 TYNTLISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALKAEHLFEKL 397

Query: 87  VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
             N   P   T+N L+   +   ++E    +   + + G   D   Y T+I    K G+ 
Sbjct: 398 KSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHMYGKHGRH 457

Query: 144 DA---MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITI 194
           D    ++ ++K     PD V +  LI   G++  ++ A  V++EM +A V P      T 
Sbjct: 458 DEALRLYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLH---TY 514

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            AL+ A A  G+   A E +  + +  IK     Y++ ++   +  + + A ++Y +M +
Sbjct: 515 SALICAYAKVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIE 574

Query: 255 KGVIPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGAC--- 306
            G  PD    EV L AL+    + G V     ++Q+ K  G ++   IS   + G C   
Sbjct: 575 AGFTPDTGLYEVMLPALV--RENMGDVIE--RVVQDTKELGSMNPHDISSVLVKGGCYDH 630

Query: 307 ---------SNAKNWQK------------------ALELYEHMKSIKLKPTVSTMNALIT 339
                    SN     +                  A EL E  +            ALI 
Sbjct: 631 GAKMLKVAISNGYELDREIFLSIMSSYSSSARYSEACELVEFFREHAPDDIQMITEALII 690

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
            LC   +L   +E       LG   +   Y  L+  C + +  ++   L S  + +GV P
Sbjct: 691 ILCKAGKLDAALEEYRSRGGLGTFRSCTMYESLIHECTKSEQFDIASQLFSDMRFNGVEP 750

Query: 400 NLVMFKCIIGMCSR 413
           +  +++ ++ +  R
Sbjct: 751 SECLYQSMVSVYCR 764



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/333 (20%), Positives = 140/333 (42%), Gaps = 10/333 (3%)

Query: 88   PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVD 144
            P+PT+ + N L+            + V++ +Q+  LK        ++   A++G   +V 
Sbjct: 855  PSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSSILLMLEAFAQAGNLFEVQ 914

Query: 145  AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             ++  +K     P   ++  +I    +   V     +L+EM        PD     +++K
Sbjct: 915  KVYNGMKAAGYFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEA--GFKPDLQIFNSVLK 972

Query: 200  ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              ++  +      +Y+MI    +    E Y   I    +    E   S+   M   G+ P
Sbjct: 973  LYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEP 1032

Query: 260  DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
                  ++I         + A E+ +E ++ G  +    Y  +M     + + QKA  L 
Sbjct: 1033 KRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLL 1092

Query: 320  EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
            E MK   ++P  +TM+ L+ +     Q  +   +L +++++G   +T+ YS ++ A  +K
Sbjct: 1093 EIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVIDAYLKK 1152

Query: 380  DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
             D + G+  L++ KE  + P+  ++ C I   S
Sbjct: 1153 GDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAAS 1185



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 73/345 (21%), Positives = 147/345 (42%), Gaps = 25/345 (7%)

Query: 35   LIRQGRISE---CIDLLEDMERKG-----LLDMDKVYHA-RFFNVCKSQKAIKEAFRFFK 85
            LI  GR+SE    I  L+DM+ K      LL ++    A   F V K    +K A  F  
Sbjct: 869  LIVDGRLSELYVVIQELQDMDLKISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAGYF-- 926

Query: 86   LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL------ITTCAK 139
                PT+  + +++ +    K       +L  + EAG K D +++ ++      I     
Sbjct: 927  ----PTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQN 982

Query: 140  SGKVDAMFEN--VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
             G +  M ++  + PD   +N LIT   +    +    ++ +M +    ++P   T  ++
Sbjct: 983  MGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKS--LGLEPKRDTYRSM 1040

Query: 198  MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            + A +     D+A E+++ +     K     Y + +     +GD + A ++ + M + G+
Sbjct: 1041 IAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGI 1100

Query: 258  IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             P+   +  L+   G +G+ E A  IL+  +  G  +  + YSS++ A     + +  +E
Sbjct: 1101 EPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLPYSSVIDAYLKKGDAKAGIE 1160

Query: 318  LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
                MK   ++P        I A     ++     +L+ ++++G 
Sbjct: 1161 KLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNALQAVGF 1205



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 98/506 (19%), Positives = 199/506 (39%), Gaps = 81/506 (16%)

Query: 97   MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--------AMFE 148
            +++ +C + K  + A +  R     G    C +Y +LI  C KS + D          F 
Sbjct: 688  LIIILCKAGK-LDAALEEYRSRGGLGTFRSCTMYESLIHECTKSEQFDIASQLFSDMRFN 746

Query: 149  NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL--MKACANAGQ 206
             V+P   ++ ++++   + G  + A  +L   +AE + +  D++T+  +  ++       
Sbjct: 747  GVEPSECLYQSMVSVYCRIGFPETAQHLL--YHAEKNDIILDNVTVHIIDIIETYGKLKM 804

Query: 207  VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
               A  + + + +   K   +V+   I+  + +G +E A ++++ M ++G  P    ++ 
Sbjct: 805  WQSAESIVENLRQRCSKMDRKVWNALIHAYAFSGCYERARAIFNTMMREGPSPTVESVNG 864

Query: 267  LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
            L+      G++   + ++QE ++  + +   S   ++ A + A N  +  ++Y  MK+  
Sbjct: 865  LLQALIVDGRLSELYVVIQELQDMDLKISKSSILLMLEAFAQAGNLFEVQKVYNGMKAAG 924

Query: 327  LKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--------------------------- 359
              PT+     +I  LC   ++     +LS+M                             
Sbjct: 925  YFPTMHLYRLMIGLLCRFKRVRDVRVMLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMG 984

Query: 360  --------LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
                     GL P+  TY+ L+    R    E GL L+ + K  G+ P    ++ +I   
Sbjct: 985  VIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSLMHKMKSLGLEPKRDTYRSMIAAF 1044

Query: 412  SRR--YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYR----------------EAIVA 453
            S++  Y++A  L E +    S   +++  +  L + +YR                EA + 
Sbjct: 1045 SKQQLYDQAEELFEEL---RSNGYKLDRSFYHLMMKMYRTSGDHQKAENLLEIMKEAGIE 1101

Query: 454  GTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFS 513
                T+ ++    G    P  AD   R+++NL      L      S+ID +         
Sbjct: 1102 PNTATMHLLMVSYGKSGQPEEAD---RILKNLRTMGAVLDTLPYSSVIDAY--------- 1149

Query: 514  LLEEAASFGIVPCVSFKEIPVVVDAR 539
            L +  A  GI      KE  +  D R
Sbjct: 1150 LKKGDAKAGIEKLTEMKEAAIEPDHR 1175



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/248 (18%), Positives = 97/248 (39%), Gaps = 41/248 (16%)

Query: 90   PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
            P L  FN ++ + +S ++ +    + +++Q+AGL  D + Y TLIT   +  + +   ++
Sbjct: 962  PDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLITMYCRDHRPEEGLSL 1021

Query: 147  FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD------------- 188
               +K     P R  + ++I A  +    D+A ++  E+ +  + +D             
Sbjct: 1022 MHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGYKLDRSFYHLMMKMYRT 1081

Query: 189  --------------------PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                                P+  T+  LM +   +GQ + A  + K +           
Sbjct: 1082 SGDHQKAENLLEIMKEAGIEPNTATMHLLMVSYGKSGQPEEADRILKNLRTMGAVLDTLP 1141

Query: 229  YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
            Y+  I+   + GD +       +M +  + PD    +  I  A  +G+V  A  +L   +
Sbjct: 1142 YSSVIDAYLKKGDAKAGIEKLTEMKEAAIEPDHRIWTCFIRAASLSGEVNDANNLLNALQ 1201

Query: 289  NQGISVGI 296
              G  + I
Sbjct: 1202 AVGFDLPI 1209


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 167/424 (39%), Gaps = 58/424 (13%)

Query: 58  DMDKVYHARFFNV-----CKSQK---AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109
           D DK    +F NV     C++     A++E  R       P+ ST+N L+     +   +
Sbjct: 152 DDDKEVFGQFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLD 211

Query: 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-----ENVKPDRVVFNALITAC 164
            A  + R +  A L+ D         +  K GK          EN  PD V +  LI+  
Sbjct: 212 SASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGL 271

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
            ++   + A D L  M A      P+ +T   L+  C N  Q+ R + V  M+       
Sbjct: 272 CEASLFEEAMDFLNRMRAT--SCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYP 329

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI---------------D 269
           +P+++   ++    +GD  +A  +   M K G +P  V  + LI               D
Sbjct: 330 SPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLD 389

Query: 270 FAGHA--------------------------GKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  A                          GK E AF +++E   QG      +YS ++
Sbjct: 390 LAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVL 449

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
               NA   + A  L+E MK   L   V T   ++ + C    + +  +  ++M+ +G  
Sbjct: 450 NYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCT 509

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
           PN +TY+ L+ A  +   V     L      +G +PN+V +  +I G C + + EKA  +
Sbjct: 510 PNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQI 569

Query: 422 NEHV 425
            E +
Sbjct: 570 FERM 573



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 200/476 (42%), Gaps = 44/476 (9%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
           P  ST++ +++   ++   E AF +   ++  GL AD   YT ++ +  K+G ++     
Sbjct: 440 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 499

Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           F  ++     P+ V + ALI A  ++  V  A ++   M +E     P+ +T  AL+   
Sbjct: 500 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSE--GCLPNIVTYSALIDGH 557

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEV------------------YTIAINCCSQTGDWE 243
             AGQV++A ++++ +     K  P+V                  Y   ++   ++   E
Sbjct: 558 CKAGQVEKACQIFERMC--GSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVE 615

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  + D M+ +G  P+++   ALID     GK++ A E+  E    G    + +YSSL+
Sbjct: 616 EARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLI 675

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                 K    A ++   M      P V     +I  LC   +  +  +++  M+  G  
Sbjct: 676 DRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQ 735

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTL 421
           PN +TY+ ++        +E  L LL +    GV PN V ++ +I  C +    + A  L
Sbjct: 736 PNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNL 795

Query: 422 NE-----HVLSFNSG-RPQIE--NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPY 473
            E     H  +  +G R  IE  NK    +L +  E     T P + V   ++  L    
Sbjct: 796 LEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 855

Query: 474 NADIRERLVENLGVSADAL--KRSNLCSLIDG--FGEYDPRAFSLLEEAASFGIVP 525
             ++  RL+E +   +  L    S   SLI+          AF L  E    G++P
Sbjct: 856 RLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIP 911



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 163/390 (41%), Gaps = 42/390 (10%)

Query: 68  FNVCKSQKAIKEAFRFFK---LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           +++CK  K  +EA    +    VP+    T  ++  +C +S   E A   L  ++     
Sbjct: 237 YSLCKVGKW-REALTLVETENFVPDTVFYT-KLISGLCEASLFEE-AMDFLNRMRATSCL 293

Query: 125 ADCKLYTTLITTCAKSGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDV 176
            +   Y+TL+  C    ++          M E   P   +FN+L+ A   SG    A+ +
Sbjct: 294 PNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKL 353

Query: 177 LAEMNAEVHPVDPDHITIGALM------KACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
           L +M    H   P ++    L+      K   N   +D A + Y  +    +       +
Sbjct: 354 LKKMVKCGHM--PGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVS 411

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
               C    G +E A SV  +M  +G IPD    S ++++  +A K+E AF + +E K  
Sbjct: 412 SFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRG 471

Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
           G+   + +Y+ ++ +   A   ++A + +  M+ +   P V T  ALI A     ++   
Sbjct: 472 GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYA 531

Query: 351 MEVLSDMKSLGLCPNTITYSILLVA-----------------CERKDDVEVGLMLLSQAK 393
            E+   M S G  PN +TYS L+                   C  KD  +V  M   Q  
Sbjct: 532 NELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD-MYFKQYD 590

Query: 394 EDGVIPNLVMFKCII-GMC-SRRYEKARTL 421
           ++   PN+V +  ++ G C S R E+AR L
Sbjct: 591 DNSERPNVVTYGALLDGFCKSHRVEEARKL 620



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/423 (21%), Positives = 176/423 (41%), Gaps = 64/423 (15%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +H+Y   ++  ++S   +L E M  +G L     Y A     CK+ + +++A + F+   
Sbjct: 519 IHAY---LKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQ-VEKACQIFE--- 571

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
                       +C S KD        +   +   + +   Y  L+    KS +V     
Sbjct: 572 -----------RMCGS-KDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 619

Query: 144 --DAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
             DAM  E  +P+++V++ALI    + G +D A +V  EM+    P      T  +L+  
Sbjct: 620 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATL--YTYSSLIDR 677

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                + D A +V   + + +      +YT  I+   + G  + A  +   M +KG  P+
Sbjct: 678 YFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPN 737

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC-------------- 306
            V  +A+ID  G  GK+E   E+L+   ++G++   ++Y  L+  C              
Sbjct: 738 VVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 797

Query: 307 --------SNAKNWQKALELY--EHMKSIKL---------KPTVSTMNALITALCDGDQL 347
                   ++   ++K +E +  E ++S+ L          P +S    LI  L    +L
Sbjct: 798 EMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRL 857

Query: 348 PKTMEVLSDMKSLG--LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
              + +L ++ +    L   + TY+ L+ +    + VE    L S+  + GVIP +  F 
Sbjct: 858 EMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFC 917

Query: 406 CII 408
            +I
Sbjct: 918 SLI 920



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 126/303 (41%), Gaps = 44/303 (14%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFK--LVPN 89
           L + G++ E  ++  +M   G       Y +   R+F V +   A K   +  +    PN
Sbjct: 643 LCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 702

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
             + T  M+  +C   K  E A++++++++E G + +   YT +I      GK++   E 
Sbjct: 703 VVIYT-EMIDGLCKVGKTDE-AYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 760

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE---VHPVDPDHITIGALM 198
                   V P+ V +  LI  C ++GA+D A ++L EM       H      +  G   
Sbjct: 761 LERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK 820

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
           +   + G +D        I + +      VY + I+   +    E A  + +++      
Sbjct: 821 EFIESLGLLDE-------IGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVA----- 868

Query: 259 PDEVFLSALIDFAGH----------AGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS 307
               F + L+D++            A KVE AF++  E   +G+   + S+ SL+ G   
Sbjct: 869 ---TFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFR 925

Query: 308 NAK 310
           N+K
Sbjct: 926 NSK 928


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 144/326 (44%), Gaps = 23/326 (7%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMSVCASSKDSEGAFQVLR 116
           F+ C+         R+FKLV              +L  FN+LM       D   A  V  
Sbjct: 107 FDTCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 166

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG 168
            + + GL+     Y TL+    + G +D  F          V+PD   ++ LI    +  
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 226

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +D A ++  EM   V  + P+ +T   L+      G+VD A E+YK +   ++      
Sbjct: 227 KMDDANELFDEM--LVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLIT 284

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   I    + GD + A  + D+M+ KG+ PD+   + LID     G ++ AF+  +   
Sbjct: 285 YNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMI 344

Query: 289 NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
              I +  ++Y++L+ G C   ++   A ++   M S+ LKP + T   +I   C    +
Sbjct: 345 QGNIRLDDVAYTALISGLCQEGRS-VDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDV 403

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILL 373
            K  ++L +M+  G  P+ +TY++L+
Sbjct: 404 WKGSKLLKEMQRNGHVPSVVTYNVLM 429



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 135/343 (39%), Gaps = 24/343 (6%)

Query: 81  FRFFKLVPNPTLSTF--------NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
           F FF  + +P  STF         M+  +C     SE    +  +V   G  +   ++ T
Sbjct: 1   FSFFTWLSSPANSTFRHTLHSYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAT 60

Query: 133 LITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDV--LAEMNAEVHPVDPD 190
           ++ T              + D  VF+ LITA  +SG +  A +   L   +    P D  
Sbjct: 61  ILETKGTQ----------RSDIYVFSGLITAYLESGFLRDAIECYRLTREHKLWVPFDTC 110

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
              +  LMK              Y+ I +     +   + I ++   + GD   A SV+D
Sbjct: 111 RKVLEHLMKL----RYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 166

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
            +TK G+ P  V  + L++     G ++  F +       G+   + +YS L+       
Sbjct: 167 AITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKES 226

Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
               A EL++ M    L P   T   LI   C   ++   ME+   M S  L P+ ITY+
Sbjct: 227 KMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYN 286

Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            L+    +K D++    L+ +    G+ P+   +  +I  C +
Sbjct: 287 TLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCK 329



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 100/257 (38%), Gaps = 23/257 (8%)

Query: 31  SYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           SYN L    IR G + E   L   M   G+      Y      +CK  K + +A   F  
Sbjct: 179 SYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-MDDANELFDE 237

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                L+PN    TF  L+     +   + A ++ + +    L  D   Y TLI    K 
Sbjct: 238 MLVKGLIPNGV--TFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKK 295

Query: 141 GK-------VDAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G        +D M  + +KPD+  +  LI  C + G +D AF     M      +  D +
Sbjct: 296 GDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQG--NIRLDDV 353

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              AL+      G+   A ++ + +    +K     YT+ IN   + GD      +  +M
Sbjct: 354 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEM 413

Query: 253 TKKGVIPDEVFLSALID 269
            + G +P  V  + L++
Sbjct: 414 QRNGHVPSVVTYNVLMN 430


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 100/460 (21%), Positives = 194/460 (42%), Gaps = 41/460 (8%)

Query: 40  RISECIDLL-EDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN-------PT 91
           R+ E +D+L + M   G       Y+      C  ++A +EA     ++ +       P 
Sbjct: 144 RLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRA-EEALELLHMMADSQGRSCPPN 202

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFE 148
           + ++  +++   +    + A+ +   + + G++ +   YTT+I    K+  VD    +F+
Sbjct: 203 VVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQ 262

Query: 149 N-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                 VKPD   +N LI      G       +L EM+A  H + PD  T G+L+    N
Sbjct: 263 QMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSA--HGLKPDCYTYGSLLNYLCN 320

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G+   AR  +  + +  IK    +Y I I+  +  G       + + M + G+ PD   
Sbjct: 321 NGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHI 380

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            + +         ++ A  I  + K QG+S  ++++ +L+ A         A+  +  M 
Sbjct: 381 FNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMM 440

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
           +  + P +   N+L+  LC  D+  K  E   +M + G+ P+ + ++ +L     K  V 
Sbjct: 441 NEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVM 500

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIG---MCSRRYEKARTLNEHVLSFNSGRPQIENKWT 440
               L+   +  G  P+++ +  +IG   +  R  E A++L+  V+     +P   ++WT
Sbjct: 501 KAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLD--VMLSVGLKP---DEWT 555

Query: 441 SLALM--------------VYREAIVAGTIPTVEVVSKVL 466
              L+              V+RE +  G  P V   S +L
Sbjct: 556 YNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTIL 595



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/404 (21%), Positives = 170/404 (42%), Gaps = 20/404 (4%)

Query: 22  AHDVSEQLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           AH +    ++Y    N L   GR  E     + M RKG+     +Y     +   ++ A+
Sbjct: 301 AHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIY-GILIHGYATKGAL 359

Query: 78  KEAFRFFKLVPNPTLS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            E      L+    LS     FN++ +  A     + A  +   +++ GL  D   +  L
Sbjct: 360 SEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGAL 419

Query: 134 ITTCAKSGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I    K G+VD         M E V P+  VFN+L+         ++A +   EM  +  
Sbjct: 420 IDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQ-- 477

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + PD +    ++      GQV +A+ +  ++ +   +     YT  I      G  + A
Sbjct: 478 GIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEA 537

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
               D M   G+ PDE   + L+     AG+++ A+ + +E    GI+ G+++YS+++  
Sbjct: 538 AKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHG 597

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
               + + +A ELY +M +   +  +   N ++  L   + + +  ++   + S      
Sbjct: 598 LFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLE 657

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
             T++I++ A  +    E  + L +     G++P++  + C+I 
Sbjct: 658 ITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTY-CLIA 700



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 83/410 (20%), Positives = 164/410 (40%), Gaps = 28/410 (6%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLS 93
           ++  I E + +   M+++GL      + A    +CK  +      +F +++     P + 
Sbjct: 390 KKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIF 449

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA------MF 147
            FN L+    +    E A +    +   G++ D   + T++      G+V        + 
Sbjct: 450 VFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLM 509

Query: 148 ENV--KPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALMKACA 202
           E V  +PD + +  LI      G +D A    DV+  +      + PD  T   L+    
Sbjct: 510 ERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVG-----LKPDEWTYNTLLHGYC 564

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
            AG++D A  V++ + +  I      Y+  ++    T  +  A  +Y +M   G   +  
Sbjct: 565 RAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIW 624

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + +++       V+ AF++ Q   ++   + I +++ ++GA   +   + A+ L+  +
Sbjct: 625 IYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATI 684

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
            S  L P V T   +   L +   L +  ++ S M+  G  PN+   + L+     + D+
Sbjct: 685 SSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDI 744

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-RY--------EKARTLNE 423
                 LS+  E            +I + SR  Y        EK R LNE
Sbjct: 745 TRAGAYLSKLDEKNFSLEASTTAMLISLLSRDEYHHHATSLPEKYRVLNE 794



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 93/200 (46%), Gaps = 6/200 (3%)

Query: 215 KMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
           +MI +  IK TP++  Y+I I C  + G  E   + +  + K G   + + ++ L+    
Sbjct: 81  RMIRECTIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLC 140

Query: 273 HAGKVEAAFEIL-QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK--- 328
            A ++  A +IL +     G +  ++SY++L+    N K  ++ALEL   M   + +   
Sbjct: 141 DAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCP 200

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P V +   +I       Q+ K   +  +M   G+ PN +TY+ ++    +   V+    +
Sbjct: 201 PNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGV 260

Query: 389 LSQAKEDGVIPNLVMFKCII 408
             Q  + GV P+   + C+I
Sbjct: 261 FQQMIDKGVKPDNDTYNCLI 280


>gi|299117242|emb|CBN75204.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 662

 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 156/381 (40%), Gaps = 58/381 (15%)

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NV 150
           ++ C  +   + +  +L  ++  G +   +L   ++  C K  + +   E         V
Sbjct: 206 ITACGRAGQWQKSLDLLDGLRADGGRTTLRLMNAVVDACRKGRQWEKALEKLSEMKGFGV 265

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
            PD   + A I AC Q    D+A ++  EM      V   H  +   +  C  A Q +RA
Sbjct: 266 VPDDFTYTAAIAACRQGRQWDKALELFREMPEAGVIVTSIHYNVA--IAICGEAKQPERA 323

Query: 211 REVYKMIH------KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-------- 256
            E+++ +       +Y I      Y  AI  C + G W+ A  ++ DMT           
Sbjct: 324 FEMFREMQGAGDGTRYEIDRVS--YNTAIIACGEGGSWDLAFKLFRDMTHPPPPPTAAEA 381

Query: 257 ------------------VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG------- 291
                             V  D +  + +ID     G  E A ++L+E    G       
Sbjct: 382 GGDAAAAAAAARRMGGGRVTADMIAYNTIIDVCKKCGPWEEAVKLLREMSTPGNGGGGSG 441

Query: 292 ----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
               I   +++Y+S + AC  + +W +ALEL+  MK++ ++P   + N  I+   +  + 
Sbjct: 442 SGGVIIPNVVTYTSAIVACGRSGHWDEALELFREMKTVGIQPDAISYNTAISVSGEAGRW 501

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL-MLLSQAKEDGVIPNLVMFKC 406
              + +L +M   G+ P+  TYS  ++ C R   +E GL +L +     G  PN++ +  
Sbjct: 502 RDGLALLEEMPGEGIKPDHTTYSTAILLCGRCGQLEAGLDVLRTTMPSHGATPNVLNYSA 561

Query: 407 IIGMC--SRRYEKARTLNEHV 425
              +C  S+ + K R + E +
Sbjct: 562 ASVICAVSKEWGKVRGVVEEM 582



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 89/416 (21%), Positives = 162/416 (38%), Gaps = 88/416 (21%)

Query: 37  RQGRISE-CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP----T 91
           R+GR  E  ++ L +M+  G++  D  Y A     C+  +   +A   F+ +P      T
Sbjct: 245 RKGRQWEKALEKLSEMKGFGVVPDDFTYTA-AIAACRQGRQWDKALELFREMPEAGVIVT 303

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAG----LKADCKLYTTLITTCAKSGKVDAMF 147
              +N+ +++C  +K  E AF++ R +Q AG     + D   Y T I  C + G  D  F
Sbjct: 304 SIHYNVAIAICGEAKQPERAFEMFREMQGAGDGTRYEIDRVSYNTAIIACGEGGSWDLAF 363

Query: 148 E----------------------------------NVKPDRVVFNALITACGQSGAVDRA 173
           +                                   V  D + +N +I  C + G  + A
Sbjct: 364 KLFRDMTHPPPPPTAAEAGGDAAAAAAAARRMGGGRVTADMIAYNTIIDVCKKCGPWEEA 423

Query: 174 FDVLAEMNAEVHP---------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
             +L EM+   +          + P+ +T  + + AC  +G  D A E+++ +    I+ 
Sbjct: 424 VKLLREMSTPGNGGGGSGSGGVIIPNVVTYTSAIVACGRSGHWDEALELFREMKTVGIQP 483

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
               Y  AI+   + G W    ++ ++M  +G+ PD    S  I   G  G++EA  ++L
Sbjct: 484 DAISYNTAISVSGEAGRWRDGLALLEEMPGEGIKPDHTTYSTAILLCGRCGQLEAGLDVL 543

Query: 285 QEA-KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
           +    + G +  +++YS+    C+ +K W K   + E M   +                 
Sbjct: 544 RTTMPSHGATPNVLNYSAASVICAVSKEWGKVRGVVEEMAVER----------------- 586

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
                            GL PN    + L+V   +    E  L  L + +E G++P
Sbjct: 587 -----------------GLSPNAACLTDLVVVGVKTGQWEDLLETLEKLEEGGILP 625



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 130/332 (39%), Gaps = 57/332 (17%)

Query: 129 LYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
           +Y   I+  +  G+     E        +  PD     A ITACG++G   ++ D+L  +
Sbjct: 166 MYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAAITACGRAGQWQKSLDLLDGL 225

Query: 181 NAEVHPVDPDHITI---GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            A     D    T+    A++ AC    Q ++A E    +  + +      YT AI  C 
Sbjct: 226 RA-----DGGRTTLRLMNAVVDACRKGRQWEKALEKLSEMKGFGVVPDDFTYTAAIAACR 280

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----IS 293
           Q   W+ A  ++ +M + GVI   +  +  I   G A + E AFE+ +E +  G      
Sbjct: 281 QGRQWDKALELFREMPEAGVIVTSIHYNVAIAICGEAKQPERAFEMFREMQGAGDGTRYE 340

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS--------------------- 332
           +  +SY++ + AC    +W  A +L+  M      PT +                     
Sbjct: 341 IDRVSYNTAIIACGEGGSWDLAFKLFRDMTHPPPPPTAAEAGGDAAAAAAAARRMGGGRV 400

Query: 333 -----TMNALITALCDGDQLPKTMEVLSDMKSLG-----------LCPNTITYSILLVAC 376
                  N +I          + +++L +M + G           + PN +TY+  +VAC
Sbjct: 401 TADMIAYNTIIDVCKKCGPWEEAVKLLREMSTPGNGGGGSGSGGVIIPNVVTYTSAIVAC 460

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            R    +  L L  + K  G+ P+ + +   I
Sbjct: 461 GRSGHWDEALELFREMKTVGIQPDAISYNTAI 492



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 74/157 (47%)

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           +A I      G+ + A EIL+  +           ++ + AC  A  WQK+L+L + +++
Sbjct: 168 NACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAAITACGRAGQWQKSLDLLDGLRA 227

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
              + T+  MNA++ A   G Q  K +E LS+MK  G+ P+  TY+  + AC +    + 
Sbjct: 228 DGGRTTLRLMNAVVDACRKGRQWEKALEKLSEMKGFGVVPDDFTYTAAIAACRQGRQWDK 287

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
            L L  +  E GVI   + +   I +C    +  R  
Sbjct: 288 ALELFREMPEAGVIVTSIHYNVAIAICGEAKQPERAF 324



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 70/152 (46%)

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
           T  +Y   I+  S  G W+ A  + + M      PDE  ++A I   G AG+ + + ++L
Sbjct: 163 TSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTAAITACGRAGQWQKSLDLL 222

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
              +  G    +   ++++ AC   + W+KALE    MK   + P   T  A I A   G
Sbjct: 223 DGLRADGGRTTLRLMNAVVDACRKGRQWEKALEKLSEMKGFGVVPDDFTYTAAIAACRQG 282

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            Q  K +E+  +M   G+   +I Y++ +  C
Sbjct: 283 RQWDKALELFREMPEAGVIVTSIHYNVAIAIC 314



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 96/245 (39%), Gaps = 26/245 (10%)

Query: 60  DKVYHARFFNVCKSQKAIKEAFRFFKLVPNP---------------TLSTFNMLMSVCAS 104
           D + +    +VCK     +EA +  + +  P                + T+   +  C  
Sbjct: 403 DMIAYNTIIDVCKKCGPWEEAVKLLREMSTPGNGGGGSGSGGVIIPNVVTYTSAIVACGR 462

Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMF-------ENVKPDRVV 156
           S   + A ++ R ++  G++ D   Y T I+   ++G+  D +        E +KPD   
Sbjct: 463 SGHWDEALELFREMKTVGIQPDAISYNTAISVSGEAGRWRDGLALLEEMPGEGIKPDHTT 522

Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK- 215
           ++  I  CG+ G ++   DVL       H   P+ +   A    CA + +  + R V + 
Sbjct: 523 YSTAILLCGRCGQLEAGLDVL-RTTMPSHGATPNVLNYSAASVICAVSKEWGKVRGVVEE 581

Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHA 274
           M  +  +       T  +    +TG WE      + + + G++P D     A +  A   
Sbjct: 582 MAVERGLSPNAACLTDLVVVGVKTGQWEDLLETLEKLEEGGILPKDPEIGQAAVTAARTC 641

Query: 275 GKVEA 279
           GK +A
Sbjct: 642 GKDQA 646


>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 605

 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 178/399 (44%), Gaps = 59/399 (14%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN ++    ++G+++E  DLL DM+  GL                              
Sbjct: 85  SYNTILDVLCKKGKLNEARDLLLDMKNNGLF----------------------------- 115

Query: 87  VPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
              P  +TFN+L+S  C      E A +V+ ++    +  D + YTTLI    K GK+D 
Sbjct: 116 ---PNRNTFNILVSGYCKLGWLKEAA-EVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDE 171

Query: 146 MF------ENVK--PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
            F      EN+K  P  V +N LI  C +  +  + F+++ EM  E   V P+ +T   +
Sbjct: 172 AFRLRDEMENLKLLPHVVTYNMLINGCFECSSSLKGFELIDEM--EGKGVKPNAVTYNVV 229

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +K     G++D A    + + +         +    N   + G    A  + D+M++KG+
Sbjct: 230 VKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAFRMMDEMSRKGL 289

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL-MGACSNAKNWQKAL 316
             + V L+ ++       K++ A+++L  A  +G  V  +SY +L MG     K+     
Sbjct: 290 KMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKVGKS----- 344

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
             ++ MK  ++ P++ T   +I  LC   +  ++++  +++   GL P+  TY+ +++  
Sbjct: 345 XXWDEMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGY 404

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCS 412
            R+  V+      ++  +    P+L  F C I   G+C+
Sbjct: 405 CREGQVDKAFHFRNKMVKKSFKPDL--FTCNILVRGLCT 441



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 88/399 (22%), Positives = 173/399 (43%), Gaps = 31/399 (7%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           +++N L+    + G + E  ++++ M R  +L   + Y      +CK  K I EAFR   
Sbjct: 119 NTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGK-IDEAFRLRD 177

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            + N    P + T+NML++ C     S   F+++  ++  G+K +   Y  ++    K G
Sbjct: 178 EMENLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVKPNAVTYNVVVKWYVKEG 237

Query: 142 KVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K+D     ++        PD V FN L     ++G +  AF ++ EM+ +   +  + +T
Sbjct: 238 KMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAFRMMDEMSRK--GLKMNSVT 295

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEV-YTIAINCCSQTGDWEFACSVYD 250
           +  ++       ++D A   YK++   + +G    EV Y   I    + G        +D
Sbjct: 296 LNTILHTLCGERKLDDA---YKLLSSASKRGYFVDEVSYGTLIMGYFKVG----KSXXWD 348

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS-LMGACSNA 309
           +M +K +IP  +    +I     +GK + + +   E    G+     +Y++ ++G C   
Sbjct: 349 EMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCREG 408

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
           +   KA      M     KP + T N L+  LC    L K +++     S G   + +T+
Sbjct: 409 Q-VDKAFHFRNKMVKKSFKPDLFTCNILVRGLCTEGMLDKALKLFKTWISKGKAIDAVTF 467

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           + ++     +   E    LL++ +E  + P+      I+
Sbjct: 468 NTIISGLCEEGRFEEAFDLLAEMEEKKLGPDCYTHNAIL 506



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/371 (22%), Positives = 158/371 (42%), Gaps = 20/371 (5%)

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV--------D 144
           +TFN+L+  C        A  ++  ++      D   Y T++    K GK+        D
Sbjct: 49  NTFNILICGCCIENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEARDLLLD 108

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                + P+R  FN L++   + G +  A +V+  M    + V PD  T   L+      
Sbjct: 109 MKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMAR--NNVLPDVRTYTTLIGGLCKD 166

Query: 205 GQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           G++D A  +   +   N+K  P V  Y + IN C +         + D+M  KGV P+ V
Sbjct: 167 GKIDEAFRLRDEME--NLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVKPNAV 224

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             + ++ +    GK++ A   L++ +  G S   +++++L      A    +A  + + M
Sbjct: 225 TYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAFRMMDEM 284

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               LK    T+N ++  LC   +L    ++LS     G   + ++Y  L++        
Sbjct: 285 SRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGY-----F 339

Query: 383 EVG-LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS 441
           +VG      + KE  +IP+++ +  +IG   R  +  +++++      SG    +  + +
Sbjct: 340 KVGKSXXWDEMKEKEIIPSIITYGTMIGGLCRSGKTDQSIDKCNELLESGLVPDQTTYNT 399

Query: 442 LALMVYREAIV 452
           + L   RE  V
Sbjct: 400 IILGYCREGQV 410



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/266 (19%), Positives = 110/266 (41%), Gaps = 3/266 (1%)

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V+ +   FN LI  C     +  A  ++ +M        PD+++   ++      G+++ 
Sbjct: 44  VEVNTNTFNILICGCCIENKLSEAIGLIGKMKH--FSCFPDNVSYNTILDVLCKKGKLNE 101

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           AR++   +    +      + I ++   + G  + A  V D M +  V+PD    + LI 
Sbjct: 102 ARDLLLDMKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIG 161

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                GK++ AF +  E +N  +   +++Y+ L+  C    +  K  EL + M+   +KP
Sbjct: 162 GLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVKP 221

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
              T N ++       ++      L  M+  G  P+ +T++ L     +   +     ++
Sbjct: 222 NAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAFRMM 281

Query: 390 SQAKEDGVIPNLVMFKCII-GMCSRR 414
            +    G+  N V    I+  +C  R
Sbjct: 282 DEMSRKGLKMNSVTLNTILHTLCGER 307



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 99/225 (44%), Gaps = 3/225 (1%)

Query: 187 VDPDHITIGALMKACA---NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243
           + P+ +T+  L+KA     +   V  ++ ++  + K  ++     + I I  C       
Sbjct: 6   LKPNLLTLNTLIKALVRYPSKPSVYLSKAIFSDVIKLGVEVNTNTFNILICGCCIENKLS 65

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  +   M      PD V  + ++D     GK+  A ++L + KN G+     +++ L+
Sbjct: 66  EAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLFPNRNTFNILV 125

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                    ++A E+ + M    + P V T   LI  LC   ++ +   +  +M++L L 
Sbjct: 126 SGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGGLCKDGKIDEAFRLRDEMENLKLL 185

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           P+ +TY++L+  C        G  L+ + +  GV PN V +  ++
Sbjct: 186 PHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVKPNAVTYNVVV 230



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 127/294 (43%), Gaps = 17/294 (5%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS-- 93
           +++G++    + L  ME  G       ++      CK+ + + EAFR    +    L   
Sbjct: 234 VKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGR-LSEAFRMMDEMSRKGLKMN 292

Query: 94  --TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DAMFE 148
             T N ++      +  + A+++L    + G   D   Y TLI    K GK    D M E
Sbjct: 293 SVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKVGKSXXWDEMKE 352

Query: 149 N-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             + P  + +  +I    +SG  D++ D   E+  E   V PD  T   ++      GQV
Sbjct: 353 KEIIPSIITYGTMIGGLCRSGKTDQSIDKCNEL-LESGLV-PDQTTYNTIILGYCREGQV 410

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAI---NCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           D+A      + K + K  P+++T  I     C++ G  + A  ++     KG   D V  
Sbjct: 411 DKAFHFRNKMVKKSFK--PDLFTCNILVRGLCTE-GMLDKALKLFKTWISKGKAIDAVTF 467

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           + +I      G+ E AF++L E + + +     ++++++ A ++A   ++A E 
Sbjct: 468 NTIISGLCEEGRFEEAFDLLAEMEEKKLGPDCYTHNAILSALADAGRMKEAEEF 521



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 117/273 (42%), Gaps = 46/273 (16%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L R G+  + ID   ++   GL+     Y+      C+ +  + +AF F  K+V     P
Sbjct: 369 LCRSGKTDQSIDKCNELLESGLVPDQTTYNTIILGYCR-EGQVDKAFHFRNKMVKKSFKP 427

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
            L T N+L               V  L  E  L    KL+ T I   +K   +DA     
Sbjct: 428 DLFTCNIL---------------VRGLCTEGMLDKALKLFKTWI---SKGKAIDA----- 464

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
               V FN +I+   + G  + AFD+LAEM  E   + PD  T  A++ A A+AG++  A
Sbjct: 465 ----VTFNTIISGLCEEGRFEEAFDLLAEM--EEKKLGPDCYTHNAILSALADAGRMKEA 518

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            E    I +   +G  +  TI++N   +  +     S   D       P+ V  S  I+ 
Sbjct: 519 EEFMSGIVE---QGKLQDQTISLN--KRKTESSSETSQESD-------PNSVAFSEQINE 566

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
               GK + A  ++QE+  +GI +   +Y SLM
Sbjct: 567 LCTQGKYKDAMHMIQESTQKGIILHKSTYISLM 599



 Score = 43.9 bits (102), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 73/165 (44%)

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
           +++ D+ K GV  +    + LI       K+  A  ++ + K+       +SY++++   
Sbjct: 34  AIFSDVIKLGVEVNTNTFNILICGCCIENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVL 93

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
                  +A +L   MK+  L P  +T N L++  C    L +  EV+  M    + P+ 
Sbjct: 94  CKKGKLNEARDLLLDMKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDV 153

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
            TY+ L+    +   ++    L  + +   ++P++V +  +I  C
Sbjct: 154 RTYTTLIGGLCKDGKIDEAFRLRDEMENLKLLPHVVTYNMLINGC 198



 Score = 42.7 bits (99), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPK---TMEVLSDMKSLGLCPNTITYSILLVACER 378
           MK + LKP + T+N LI AL      P    +  + SD+  LG+  NT T++IL+  C  
Sbjct: 1   MKRLHLKPNLLTLNTLIKALVRYPSKPSVYLSKAIFSDVIKLGVEVNTNTFNILICGCCI 60

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKARTL 421
           ++ +   + L+ + K     P+ V +  I+  +C + +  +AR L
Sbjct: 61  ENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLCKKGKLNEARDL 105


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 144/306 (47%), Gaps = 10/306 (3%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK--------PDRVVFNALIT 162
           A ++L  +++ G   D   Y  ++    + G+VD   E +K        P+ V +N ++ 
Sbjct: 11  AMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLK 70

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
               +   + A +++ EM  +  P  P+ +T   L+      G V+ A EV + I KY  
Sbjct: 71  GLCTAERWEDAEELMGEMGQKGCP--PNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGC 128

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
                 Y   ++   +    + A +  D M  +G  PD V  + L+     +G+V+ A E
Sbjct: 129 TPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVE 188

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +L + K++G +  +ISY++++   + A   ++ALEL   M S  L+P + T + +   LC
Sbjct: 189 LLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLC 248

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
             D++   +     ++ +G+ PNT+ Y+ +++   ++ +    + L +    +G +PN  
Sbjct: 249 REDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNES 308

Query: 403 MFKCII 408
            +  +I
Sbjct: 309 TYTILI 314



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 125/288 (43%), Gaps = 39/288 (13%)

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
            C +SG   +A  +L EM  +     PD +T   ++      G+VD A E  K +  Y  
Sbjct: 2   TCKRSG-YKQAMKLLDEMRDK--GCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGC 58

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           +     Y I +        WE A  +  +M +KG  P+ V  + LI F    G VE A E
Sbjct: 59  EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALE 118

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           +L++    G +   +SY+ L+ A    K   KA+   + M S    P + + N L+TALC
Sbjct: 119 VLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALC 178

Query: 343 -------------------------------DG----DQLPKTMEVLSDMKSLGLCPNTI 367
                                          DG     +  + +E+L++M S GL P+ I
Sbjct: 179 RSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDII 238

Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
           TYS +     R+D +E  +    + ++ G+ PN V++  II G+C RR
Sbjct: 239 TYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRR 286



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/278 (20%), Positives = 116/278 (41%), Gaps = 19/278 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN +++      R  +  +L+ +M +KG       ++     +C+ +  ++ A    + 
Sbjct: 64  SYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR-KGLVEPALEVLEQ 122

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +P     P   ++N L+      K  + A   L L+   G   D   Y TL+T   +SG+
Sbjct: 123 IPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGE 182

Query: 143 VDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           VD   E           P  + +N +I    ++G    A ++L EM ++   + PD IT 
Sbjct: 183 VDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSK--GLQPDIITY 240

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             +        +++ A   +  +    I+    +Y   I    +  +   A  ++  M  
Sbjct: 241 STIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIG 300

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
            G +P+E   + LI+   + G ++ A ++L E  ++G+
Sbjct: 301 NGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGV 338



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 30/236 (12%)

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           +++A++L + M+     P + T N ++  +C   ++   +E L ++ S G  PNT++Y+I
Sbjct: 8   YKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNI 67

Query: 372 L---LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHV- 425
           +   L   ER +D E    L+ +  + G  PN+V F  +I    R+   E A  + E + 
Sbjct: 68  VLKGLCTAERWEDAE---ELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP 124

Query: 426 --------LSFN------SGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 471
                   LS+N        + +++     L LMV R     G  P +   + +L  L  
Sbjct: 125 KYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSR-----GCYPDIVSYNTLLTALCR 179

Query: 472 PYNADIRERLVENLGVSADALKRSNLCSLIDGFGEY--DPRAFSLLEEAASFGIVP 525
               D+   L+  L     A    +  ++IDG  +      A  LL E  S G+ P
Sbjct: 180 SGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQP 235


>gi|225462201|ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
           chloroplastic [Vitis vinifera]
 gi|147852271|emb|CAN82234.1| hypothetical protein VITISV_038804 [Vitis vinifera]
          Length = 567

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 99/420 (23%), Positives = 176/420 (41%), Gaps = 21/420 (5%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFK--LV 87
           N L ++G +   + L+E ME  G       Y++    +C      ++++   +F K  LV
Sbjct: 140 NNLCKRGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCMHGNLSQSLQILDKFMKKGLV 199

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           PN  + T++ L+      + ++ A ++L  +   G K +   Y  L+T   K G+ +   
Sbjct: 200 PN--VFTYSFLLEAAYKERGADEAIRLLDEIVAKGGKPNLVSYNVLLTGLCKEGRTEEAM 257

Query: 148 ENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +  +        P+ V +N L+ +    G  ++A ++LAEM+       P  +T   L+ 
Sbjct: 258 QFFRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAKELLAEMDGGER--SPSIVTFNILIG 315

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
           + A  GQ D+A EV   + +   K T   Y   I    + G  +      D M  +   P
Sbjct: 316 SLALHGQTDQALEVLDDMSRARFKATAASYNPIIARLCKEGKVDLVVKCLDQMMYRRCNP 375

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +E   +A I      GKV+ AF I+Q   N+  S     Y  ++ +     N   A +L 
Sbjct: 376 NEGTYNA-IAVLCEEGKVQEAFSIIQSLGNKQNSSTHDFYKGVISSLCRKGNTYPAFQLL 434

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M      P   T ++LI  LC    L + ME+ S M+     P+   ++ L++   + 
Sbjct: 435 YEMTKYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIMEENYCRPDVDNFNALILGLCKC 494

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE---KARTLNEHVLSFNSGRPQIE 436
              ++ LM+     + G +PN   +  I+   + + E    A  L E  L    GR  +E
Sbjct: 495 RKTDLSLMVFEMMVKKGYMPNETTYTIIVEGIAHQEEMELAAAVLKELYLRQAVGRSTLE 554



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 89/415 (21%), Positives = 163/415 (39%), Gaps = 57/415 (13%)

Query: 97  MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DAMFEN 149
           ++  +C S+K  + A +V+ L+  +G   D    T L+    K G V       + M E 
Sbjct: 103 LMYELCKSNKMRK-ATKVMELMIGSGTTPDPASCTFLVNNLCKRGNVGYAMQLVEKMEEY 161

Query: 150 VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
             P + V +N+L+      G + ++  +L +   +   + P+  T   L++A       D
Sbjct: 162 GYPTNTVTYNSLVRGLCMHGNLSQSLQILDKFMKK--GLVPNVFTYSFLLEAAYKERGAD 219

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            A  +   I     K     Y + +    + G  E A   + D+  KG  P+ V  + L+
Sbjct: 220 EAIRLLDEIVAKGGKPNLVSYNVLLTGLCKEGRTEEAMQFFRDLPSKGFSPNVVSYNILL 279

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
               + G+ E A E+L E      S  I++++ L+G+ +      +ALE+ + M   + K
Sbjct: 280 RSLCYEGRWEKAKELLAEMDGGERSPSIVTFNILIGSLALHGQTDQALEVLDDMSRARFK 339

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE----------- 377
            T ++ N +I  LC   ++   ++ L  M      PN  TY+ + V CE           
Sbjct: 340 ATAASYNPIIARLCKEGKVDLVVKCLDQMMYRRCNPNEGTYNAIAVLCEEGKVQEAFSII 399

Query: 378 -----------------------RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
                                  RK +      LL +  + G +P+   +  +I G+CS 
Sbjct: 400 QSLGNKQNSSTHDFYKGVISSLCRKGNTYPAFQLLYEMTKYGFVPDSYTYSSLIRGLCSE 459

Query: 414 RYEKARTLNEHVLSFNSGRPQIEN-----------KWTSLALMVYREAIVAGTIP 457
                      ++  N  RP ++N           + T L+LMV+   +  G +P
Sbjct: 460 GMLDEAMEIFSIMEENYCRPDVDNFNALILGLCKCRKTDLSLMVFEMMVKKGYMP 514



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 69/312 (22%), Positives = 131/312 (41%), Gaps = 16/312 (5%)

Query: 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--------MFENVKPDRVVFNALIT 162
           AF  L  +   G K D    T L+    KS K+          +     PD      L+ 
Sbjct: 81  AFLYLEYMIGKGHKPDGGQATQLMYELCKSNKMRKATKVMELMIGSGTTPDPASCTFLVN 140

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
              + G V  A  ++ +M    +P +   +T  +L++     G + ++ ++   + K+  
Sbjct: 141 NLCKRGNVGYAMQLVEKMEEYGYPTNT--VTYNSLVRGLCMHGNLSQSLQI---LDKFMK 195

Query: 223 KG-TPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
           KG  P V+T +  +    +    + A  + D++  KG  P+ V  + L+      G+ E 
Sbjct: 196 KGLVPNVFTYSFLLEAAYKERGADEAIRLLDEIVAKGGKPNLVSYNVLLTGLCKEGRTEE 255

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A +  ++  ++G S  ++SY+ L+ +      W+KA EL   M   +  P++ T N LI 
Sbjct: 256 AMQFFRDLPSKGFSPNVVSYNILLRSLCYEGRWEKAKELLAEMDGGERSPSIVTFNILIG 315

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
           +L    Q  + +EVL DM          +Y+ ++    ++  V++ +  L Q       P
Sbjct: 316 SLALHGQTDQALEVLDDMSRARFKATAASYNPIIARLCKEGKVDLVVKCLDQMMYRRCNP 375

Query: 400 NLVMFKCIIGMC 411
           N   +  I  +C
Sbjct: 376 NEGTYNAIAVLC 387


>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 793

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 10/290 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK-- 151
           T+N L+S C      + A +V   ++ AG + D   + +L+    K+   D     +K  
Sbjct: 251 TYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYGKARMHDEAIGVLKEM 310

Query: 152 ------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                 P  V +N+LI++  + G +  A ++  EM  EV  + PD IT   L+     AG
Sbjct: 311 ELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEM--EVKGIQPDVITYTTLISGLDRAG 368

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           ++D A   Y  + +   K     Y   I      G +    +V+DD+   G +PD V  +
Sbjct: 369 KIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWN 428

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            L+   G  G       + +E K  G      +Y SL+ + S    + +++E+Y+ M   
Sbjct: 429 TLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEA 488

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            + P +ST NA+++AL  G +  +  ++ ++M++L   P+ ++YS LL A
Sbjct: 489 GIYPDISTYNAVLSALARGGRWEQAEKLFAEMENLDCRPDELSYSSLLHA 538



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/387 (22%), Positives = 170/387 (43%), Gaps = 17/387 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHA--RFFNV---CKSQKAIKEAFRFFKLVPN 89
           L R G+I   I   ++M R G       Y+A  +   V        A+ +  R    VP+
Sbjct: 364 LDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPD 423

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
             + T+N L++V   +        V + ++++G   +   Y +LI++ ++ G  D   E 
Sbjct: 424 --VVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEI 481

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   + PD   +NA+++A  + G  ++A  + AEM  E     PD ++  +L+ A 
Sbjct: 482 YKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKLFAEM--ENLDCRPDELSYSSLLHAY 539

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           ANA ++D+ + + + I+   I+    +    +   S+  +       + ++ ++    D 
Sbjct: 540 ANAKKLDKMKALSEDIYAEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDI 599

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
             L+A++   G    V+   EIL   K   I++   +Y+SLM   S   + +K   +   
Sbjct: 600 NVLNAMVSVYGKNRMVKKVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILTE 659

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +KS   +P   + N +I A     Q+ +   + S+MKS GL P+ +TY+I + +      
Sbjct: 660 IKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSM 719

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
            E  + L+      G  PN   +  I+
Sbjct: 720 FEEAIDLVRYMVTRGCKPNERTYNSIL 746



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 141/345 (40%), Gaps = 13/345 (3%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK-------- 139
           P P  S +  L+S  + +     A  V R +   G++     Y  ++   +K        
Sbjct: 174 PEPDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDV 233

Query: 140 SGKVDAMFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
              VD+M  +  P DR  +N LI+ C +      A  V  EM A     +PD +T  +L+
Sbjct: 234 VALVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAA--GFEPDKVTFNSLL 291

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                A   D A  V K +       +   Y   I+   + G  + A  + ++M  KG+ 
Sbjct: 292 DVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQ 351

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PD +  + LI     AGK++AA     E    G    + +Y++L+        + + + +
Sbjct: 352 PDVITYTTLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAV 411

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
           ++ ++S    P V T N L+          +   V  +MK  G  P   TY  L+ +  R
Sbjct: 412 FDDLRSAGFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYSR 471

Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 421
               +  + +  +  E G+ P++  +  ++   +R  R+E+A  L
Sbjct: 472 CGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALARGGRWEQAEKL 516



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 73/382 (19%), Positives = 158/382 (41%), Gaps = 50/382 (13%)

Query: 28  QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            L +YN LI+    +G+  E + + +D+   G +  D V       V        E    
Sbjct: 388 NLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVP-DVVTWNTLLAVFGQNGLDSEVSGV 446

Query: 84  FKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
           FK +      P   T+  L+S  +     + + ++ + + EAG+  D   Y  +++  A+
Sbjct: 447 FKEMKKSGYVPERDTYVSLISSYSRCGLFDQSMEIYKRMIEAGIYPDISTYNAVLSALAR 506

Query: 140 SG------KVDAMFENV--KPDRVVFNALITACGQSGAVDR----AFDVLAE-------- 179
            G      K+ A  EN+  +PD + +++L+ A   +  +D+    + D+ AE        
Sbjct: 507 GGRWEQAEKLFAEMENLDCRPDELSYSSLLHAYANAKKLDKMKALSEDIYAEKIESHHGL 566

Query: 180 ------MNAEVHPVDP---------------DHITIGALMKACANAGQVDRAREVYKMIH 218
                 +N++V+ +                 D   + A++        V +  E+  ++ 
Sbjct: 567 VKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVKKVEEILSLMK 626

Query: 219 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278
             +I  +   Y   ++  S+ GD E   ++  ++   G  PD    + +I   G  G+++
Sbjct: 627 GSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMK 686

Query: 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338
            A  +  E K+ G+   I++Y+  + +      +++A++L  +M +   KP   T N+++
Sbjct: 687 EASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSIL 746

Query: 339 TALCDGDQLPKTMEVLSDMKSL 360
              C   ++      LS++  L
Sbjct: 747 QEYCRHGKIADAKSFLSNLPQL 768


>gi|357142282|ref|XP_003572519.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 706

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 165/380 (43%), Gaps = 46/380 (12%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           +HS+    + G +   + +L+ M + G      VY+    +       +KEA   F  +P
Sbjct: 232 IHSF---CQSGLVDRAMGILDRMSKCGCTPGAIVYN-EIISCFAELGRVKEALHLFSCMP 287

Query: 89  -NPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             P + ++N +L  +C + +  +    +  +V++     DC                   
Sbjct: 288 CKPDIFSYNAVLKGLCRAERWEDAGELITEMVRK-----DCS------------------ 324

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
                PD V FN +I+     G VD A +V+ +M    +   PD+ T  AL+ A +  G 
Sbjct: 325 -----PDEVTFNTVISFLCHKGLVDCALEVVDQMPK--YGRKPDNFTYSALINAFSEQGC 377

Query: 207 VDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           V+ A E+ +     ++  +P    Y   +    + G WE    +  +M +    PDE+  
Sbjct: 378 VEDALELLR-----SMPCSPNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRNDCAPDEMVF 432

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
             +ID     G V+   E+LQE  N G S  ++ Y+SL+   +       +L+L+   KS
Sbjct: 433 GLIIDCLCQRGLVDCGLEVLQEVPNYGCSPDVVMYTSLLNGFAEYGRVDDSLKLF---KS 489

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
           +  KP   T N ++  LC  +      +++ +M      PN +T+SIL+ +  +K  VE 
Sbjct: 490 MTCKPNTVTYNYVLMGLCKVELWEDAGKLIDEMVGQECPPNEMTFSILISSLCQKGLVEC 549

Query: 385 GLMLLSQAKEDGVIPNLVMF 404
            + +  + +  G  PN++++
Sbjct: 550 AIDVFEKMQMYGCTPNVIIY 569



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 92/424 (21%), Positives = 168/424 (39%), Gaps = 58/424 (13%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           YN +I      GR+ E + L   M  K  +     Y+A    +C++++         ++V
Sbjct: 263 YNEIISCFAELGRVKEALHLFSCMPCKPDI---FSYNAVLKGLCRAERWEDAGELITEMV 319

Query: 88  P---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV- 143
               +P   TFN ++S        + A +V+  + + G K D   Y+ LI   ++ G V 
Sbjct: 320 RKDCSPDEVTFNTVISFLCHKGLVDCALEVVDQMPKYGRKPDNFTYSALINAFSEQGCVE 379

Query: 144 ---------------------------DAMFENV------------KPDRVVFNALITAC 164
                                      D  +E+V             PD +VF  +I   
Sbjct: 380 DALELLRSMPCSPNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRNDCAPDEMVFGLIIDCL 439

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
            Q G VD   +VL E+    +   PD +   +L+   A  G+VD + +++K +     K 
Sbjct: 440 CQRGLVDCGLEVLQEVPN--YGCSPDVVMYTSLLNGFAEYGRVDDSLKLFKSM---TCKP 494

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
               Y   +    +   WE A  + D+M  +   P+E+  S LI      G VE A ++ 
Sbjct: 495 NTVTYNYVLMGLCKVELWEDAGKLIDEMVGQECPPNEMTFSILISSLCQKGLVECAIDVF 554

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
           ++ +  G +  +I YS+L    S       AL+L  +M     K      ++ +  LC  
Sbjct: 555 EKMQMYGCTPNVIIYSTLNNGLSEKGCVDNALKLLNNMSC---KADTICYSSALKGLCRA 611

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           +      E++ +M      P+ +T+SI++    ++  VE    +     +    PN+V++
Sbjct: 612 ELWEDAGELIVEMFRKDCPPDEVTFSIIITNLCQQGFVEYATEVSDLMLKYECTPNIVIY 671

Query: 405 KCII 408
             +I
Sbjct: 672 SSLI 675



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/382 (20%), Positives = 148/382 (38%), Gaps = 28/382 (7%)

Query: 24  DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           D S    ++N +I     +G +   +++++ M + G    D   ++   N    Q  +++
Sbjct: 322 DCSPDEVTFNTVISFLCHKGLVDCALEVVDQMPKYGR-KPDNFTYSALINAFSEQGCVED 380

Query: 80  AFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           A    + +P +P    +  ++         E   Q++  +       D  ++  +I    
Sbjct: 381 ALELLRSMPCSPNTVCYKSVLKGLCRDGQWEDVGQLIGEMVRNDCAPDEMVFGLIIDCLC 440

Query: 139 KSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           + G VD   E           PD V++ +L+    + G VD +  +   M  + + V  +
Sbjct: 441 QRGLVDCGLEVLQEVPNYGCSPDVVMYTSLLNGFAEYGRVDDSLKLFKSMTCKPNTVTYN 500

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAINCCSQTGDWEFACS 247
           ++ +G          +V+   +  K+I +   +  P     ++I I+   Q G  E A  
Sbjct: 501 YVLMGLC--------KVELWEDAGKLIDEMVGQECPPNEMTFSILISSLCQKGLVECAID 552

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           V++ M   G  P+ +  S L +     G V+ A ++L    N       I YSS +    
Sbjct: 553 VFEKMQMYGCTPNVIIYSTLNNGLSEKGCVDNALKLLN---NMSCKADTICYSSALKGLC 609

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
            A+ W+ A EL   M      P   T + +IT LC    +    EV   M      PN +
Sbjct: 610 RAELWEDAGELIVEMFRKDCPPDEVTFSIIITNLCQQGFVEYATEVSDLMLKYECTPNIV 669

Query: 368 TYSILLVACERKDDVEVGLMLL 389
            YS L+        +E  L LL
Sbjct: 670 IYSSLINGFSEHGHLEDALKLL 691



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 128/300 (42%), Gaps = 39/300 (13%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-LVPNPTLS 93
           L ++G +   +++L+++   G    D V +    N       + ++ + FK +   P   
Sbjct: 439 LCQRGLVDCGLEVLQEVPNYGC-SPDVVMYTSLLNGFAEYGRVDDSLKLFKSMTCKPNTV 497

Query: 94  TFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP 152
           T+N +LM +C            + L ++AG     KL   ++             +   P
Sbjct: 498 TYNYVLMGLCK-----------VELWEDAG-----KLIDEMVG------------QECPP 529

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           + + F+ LI++  Q G V+ A DV  +M  +++   P+ I    L    +  G VD A  
Sbjct: 530 NEMTFSILISSLCQKGLVECAIDVFEKM--QMYGCTPNVIIYSTLNNGLSEKGCVDNA-- 585

Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
             K+++  + K     Y+ A+    +   WE A  +  +M +K   PDEV  S +I    
Sbjct: 586 -LKLLNNMSCKADTICYSSALKGLCRAELWEDAGELIVEMFRKDCPPDEVTFSIIITNLC 644

Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
             G VE A E+         +  I+ YSSL+   S   + + AL+L   ++S+  +P  S
Sbjct: 645 QQGFVEYATEVSDLMLKYECTPNIVIYSSLINGFSEHGHLEDALKL---LRSMPCEPDTS 701



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/420 (20%), Positives = 170/420 (40%), Gaps = 37/420 (8%)

Query: 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP-DRVVFNALITACG 165
           D + A Q++  + E      C L    +    +    + +    +  D V  N L+    
Sbjct: 76  DLDAALQLVGSMSEPPAVVPCTLLIKKLCAAGRLADAEGVLRASEAADAVDHNTLVAGYC 135

Query: 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
           ++G +  A  +L  + A       D +T   L+      G+++ AR +       ++   
Sbjct: 136 RAGRLADAERMLRSLAASGAA---DVVTYNTLIAGYCRGGRLEDARLLVA-----SMPPA 187

Query: 226 PEVY---TIAINCCS--QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
           P  Y   T+    CS  Q GD E    + ++MT+    PD++    LI     +G V+ A
Sbjct: 188 PNSYAYNTLLKGLCSAKQWGDAE---ELVEEMTRNDSPPDDLTFGMLIHSFCQSGLVDRA 244

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
             IL      G + G I Y+ ++   +     ++AL L+  M     KP + + NA++  
Sbjct: 245 MGILDRMSKCGCTPGAIVYNEIISCFAELGRVKEALHLFSCMPC---KPDIFSYNAVLKG 301

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
           LC  ++     E++++M      P+ +T++ ++     K  V+  L ++ Q  + G  P+
Sbjct: 302 LCRAERWEDAGELITEMVRKDCSPDEVTFNTVISFLCHKGLVDCALEVVDQMPKYGRKPD 361

Query: 401 LVMFKCII------GMCSRRYEKARTL--NEHVLSFNSGRPQI--ENKWTSLALMVYREA 450
              +  +I      G      E  R++  + + + + S    +  + +W  +  ++  E 
Sbjct: 362 NFTYSALINAFSEQGCVEDALELLRSMPCSPNTVCYKSVLKGLCRDGQWEDVGQLI-GEM 420

Query: 451 IVAGTIPTVEVVSKVLGCLQLPYNADIRERL---VENLGVSADALKRSNLCSLIDGFGEY 507
           +     P   V   ++ CL      D    +   V N G S D +  +   SL++GF EY
Sbjct: 421 VRNDCAPDEMVFGLIIDCLCQRGLVDCGLEVLQEVPNYGCSPDVVMYT---SLLNGFAEY 477


>gi|15233142|ref|NP_191058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210358|sp|Q9SV46.1|PP282_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g54980, mitochondrial; Flags: Precursor
 gi|4678295|emb|CAB41086.1| putative protein [Arabidopsis thaliana]
 gi|28393168|gb|AAO42016.1| unknown protein [Arabidopsis thaliana]
 gi|332645801|gb|AEE79322.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 851

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/386 (19%), Positives = 173/386 (44%), Gaps = 14/386 (3%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PT 91
           L +QG+  E  +LL  ME +G+      Y+      C+ +        F  ++     P 
Sbjct: 453 LCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNILEKGLKPN 512

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMFE 148
             T+++L+  C  + D + A +V+  +  + ++ +  +Y T+I    K G   K   +  
Sbjct: 513 NYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVYQTIINGLCKVGQTSKARELLA 572

Query: 149 NVKPDR------VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           N+  ++      + +N++I    + G +D A     EM    + + P+ IT  +LM    
Sbjct: 573 NMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCG--NGISPNVITYTSLMNGLC 630

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
              ++D+A E+   +    +K     Y   I+   +  + E A +++ ++ ++G+ P + 
Sbjct: 631 KNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLEEGLNPSQP 690

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
             ++LI    + G + AA ++ ++    G+   + +Y++L+       N   A ELY  M
Sbjct: 691 IYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLILASELYTEM 750

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
           +++ L P       ++  L    Q  K +++  +MK   + PN + Y+ ++    R+ ++
Sbjct: 751 QAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNL 810

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCII 408
           +    L  +  + G++P+   F  ++
Sbjct: 811 DEAFRLHDEMLDKGILPDGATFDILV 836



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 86/385 (22%), Positives = 170/385 (44%), Gaps = 15/385 (3%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLV---PNPT 91
           ++QG + + I L ++M   G+  M+ V         CK+   +     F K+    P+P 
Sbjct: 315 VKQGNMDDAIRLKDEMLSDGI-SMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPN 373

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VD 144
             TF++L+     + + E A +  + ++  GL        T+I    K  K        D
Sbjct: 374 SVTFSVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFD 433

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
             FE    +  V N +++   + G  D A ++L++M  E   + P+ ++   +M      
Sbjct: 434 ESFETGLANVFVCNTILSWLCKQGKTDEATELLSKM--ESRGIGPNVVSYNNVMLGHCRQ 491

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
             +D AR V+  I +  +K     Y+I I+ C +  D + A  V + MT   +  + V  
Sbjct: 492 KNMDLARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSSNIEVNGVVY 551

Query: 265 SALIDFAGHAGKVEAAFEILQEA-KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
             +I+     G+   A E+L    + + + V  +SY+S++           A+  YE M 
Sbjct: 552 QTIINGLCKVGQTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMC 611

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              + P V T  +L+  LC  +++ + +E+  +MK+ G+  +   Y  L+    ++ ++E
Sbjct: 612 GNGISPNVITYTSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNME 671

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
               L S+  E+G+ P+  ++  +I
Sbjct: 672 SASALFSELLEEGLNPSQPIYNSLI 696



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 173/393 (44%), Gaps = 42/393 (10%)

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           A+    +PD ++++  + AC ++  +  A  +L EM  +   V P   T  +++ A    
Sbjct: 259 AIERGAEPDSLLYSLAVQACCKTLDLAMANSLLREMKEKKLCV-PSQETYTSVILASVKQ 317

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G +D A  +   +    I       T  I    +  D   A  ++D M K+G  P+ V  
Sbjct: 318 GNMDDAIRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKEGPSPNSVTF 377

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           S LI++    G++E A E  ++ +  G++  +    +++      +  ++AL+L++    
Sbjct: 378 SVLIEWFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFE 437

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
             L   V   N +++ LC   +  +  E+LS M+S G+ PN ++Y+ +++   R+ ++++
Sbjct: 438 TGL-ANVFVCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDL 496

Query: 385 GLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 444
             ++ S   E G+ PN   +  +I  C R +++   L            ++ N  TS  +
Sbjct: 497 ARIVFSNILEKGLKPNNYTYSILIDGCFRNHDEQNAL------------EVVNHMTSSNI 544

Query: 445 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLC------ 498
            V    +V  TI        + G  ++   +  RE L       A+ ++   LC      
Sbjct: 545 EV--NGVVYQTI--------INGLCKVGQTSKARELL-------ANMIEEKRLCVSCMSY 587

Query: 499 -SLIDGF---GEYDPRAFSLLEEAASFGIVPCV 527
            S+IDGF   GE D  A +  EE    GI P V
Sbjct: 588 NSIIDGFFKEGEMDS-AVAAYEEMCGNGISPNV 619



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/420 (19%), Positives = 177/420 (42%), Gaps = 50/420 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF- 95
           + G + + ++  + ME  GL       H       K QK  +EA + F       L+   
Sbjct: 386 KNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQKH-EEALKLFDESFETGLANVF 444

Query: 96  --NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENV 150
             N ++S       ++ A ++L  ++  G+  +   Y  ++    +   +D    +F N+
Sbjct: 445 VCNTILSWLCKQGKTDEATELLSKMESRGIGPNVVSYNNVMLGHCRQKNMDLARIVFSNI 504

Query: 151 -----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                KP+   ++ LI  C ++     A +V+  M +    ++ + +    ++      G
Sbjct: 505 LEKGLKPNNYTYSILIDGCFRNHDEQNALEVVNHMTSS--NIEVNGVVYQTIINGLCKVG 562

Query: 206 QVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           Q  +ARE+   MI +  +  +   Y   I+   + G+ + A + Y++M   G+ P+ +  
Sbjct: 563 QTSKARELLANMIEEKRLCVSCMSYNSIIDGFFKEGEMDSAVAAYEEMCGNGISPNVITY 622

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS---------------- 307
           ++L++      +++ A E+  E KN+G+ + I +Y +L+ G C                 
Sbjct: 623 TSLMNGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIDGFCKRSNMESASALFSELLE 682

Query: 308 ------------------NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
                             N  N   AL+LY+ M    L+  + T   LI  L     L  
Sbjct: 683 EGLNPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNLIL 742

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
             E+ ++M+++GL P+ I Y++++    +K      + +  + K++ V PN++++  +I 
Sbjct: 743 ASELYTEMQAVGLVPDEIIYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIA 802



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 105/250 (42%), Gaps = 36/250 (14%)

Query: 33  NRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--- 88
           N L +  R+ + +++ ++M+ KG+ LD+   Y A     CK       +  F +L+    
Sbjct: 627 NGLCKNNRMDQALEMRDEMKNKGVKLDI-PAYGALIDGFCKRSNMESASALFSELLEEGL 685

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           NP+   +N L+S   +  +   A  + + + + GL+ D   YTTLI    K G +     
Sbjct: 686 NPSQPIYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKDGNL----- 740

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
                 ++ + L T     G V                  PD I    ++   +  GQ  
Sbjct: 741 ------ILASELYTEMQAVGLV------------------PDEIIYTVIVNGLSKKGQFV 776

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
           +  ++++ + K N+     +Y   I    + G+ + A  ++D+M  KG++PD      L+
Sbjct: 777 KVVKMFEEMKKNNVTPNVLIYNAVIAGHYREGNLDEAFRLHDEMLDKGILPDGATFDILV 836

Query: 269 DFAGHAGKVE 278
             +G  G ++
Sbjct: 837 --SGQVGNLQ 844



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 90/226 (39%), Gaps = 1/226 (0%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ A +   Q D A ++   + + ++          ++   Q      A  +Y  M   G
Sbjct: 169 LLNAYSKDRQTDHAVDIVNQMLELDVIPFFPYVNRTLSALVQRNSLTEAKELYSRMVAIG 228

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V  D V    L+  +    K   A E+L  A  +G     + YS  + AC    +   A 
Sbjct: 229 VDGDNVTTQLLMRASLREEKPAEALEVLSRAIERGAEPDSLLYSLAVQACCKTLDLAMAN 288

Query: 317 ELYEHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            L   MK  KL  P+  T  ++I A      +   + +  +M S G+  N +  + L+  
Sbjct: 289 SLLREMKEKKLCVPSQETYTSVILASVKQGNMDDAIRLKDEMLSDGISMNVVAATSLITG 348

Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
             + +D+   L+L  + +++G  PN V F  +I    +  E  + L
Sbjct: 349 HCKNNDLVSALVLFDKMEKEGPSPNSVTFSVLIEWFRKNGEMEKAL 394


>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 132/298 (44%), Gaps = 10/298 (3%)

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK-- 151
           T+N L+S CA     + A  V R + E G+  D   Y+ L+ T  K  +++ + E +K  
Sbjct: 12  TYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEM 71

Query: 152 ------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
                 PD   +N L+ A  QSG++  A  V  +M        P+  T   L+      G
Sbjct: 72  ESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGA--GCVPNAATYSILLNLYGRHG 129

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
           + D  R+++  +   N +     Y I IN   + G ++   +++ DM ++ V P+     
Sbjct: 130 RYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNMETYE 189

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
            LI   G  G  E A +IL     +G+     +Y+ ++ A   A  +++AL  +  M  +
Sbjct: 190 GLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEV 249

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
             KPTV T N+LI     G    ++  +L  M   G+  N  T++ ++ A  +    E
Sbjct: 250 GSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFE 307



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 140/310 (45%), Gaps = 10/310 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P ++++N+L+   A S   + A  V R +Q AG   +   Y+ L+    + G+ D + + 
Sbjct: 78  PDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLYGRHGRYDDVRDL 137

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                  N +P+   +N LI   G+ G       +  +M  E   V+P+  T   L+ AC
Sbjct: 138 FLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEE--NVEPNMETYEGLIFAC 195

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G  + A+++   +++  +  + + YT  I    Q   +E A   ++ M + G  P  
Sbjct: 196 GKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEALVAFNTMNEVGSKPTV 255

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
              ++LI      G  + +  IL +    G++    +++ ++ A      +++A++ Y  
Sbjct: 256 ETYNSLIQMFAKGGLYKESEAILLKMGQSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVE 315

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M+  +  P   T+ A+++  C    + ++ E   ++K+LG+ P+ + Y ++L    + D 
Sbjct: 316 MEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCYCMMLAVYAKADR 375

Query: 382 VEVGLMLLSQ 391
            +    LL +
Sbjct: 376 WDDAHQLLDE 385



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/337 (20%), Positives = 133/337 (39%), Gaps = 28/337 (8%)

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           +  D +T   L+ ACA  G  D A  V++ +++  I      Y+  +    +    E   
Sbjct: 6   IQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVS 65

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +  +M   G  PD    + L++    +G ++ A  + ++ +  G      +YS L+   
Sbjct: 66  ELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSILLNLY 125

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
                +    +L+  MK    +P  +T N LI    +G    + + +  DM    + PN 
Sbjct: 126 GRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEENVEPNM 185

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVL 426
            TY  L+ AC +    E    +L    E GV+P+   +  +I      Y +A    E ++
Sbjct: 186 ETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVI----EAYGQAALYEEALV 241

Query: 427 SFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLG 486
           +FN+                       G+ PTVE  + ++            E ++  +G
Sbjct: 242 AFNTMNE-------------------VGSKPTVETYNSLIQMFAKGGLYKESEAILLKMG 282

Query: 487 VSADALKRSNLCSLIDGF---GEYDP--RAFSLLEEA 518
            S  A  R     +I+ F   G+++   +A+  +E+A
Sbjct: 283 QSGVARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKA 319



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/421 (21%), Positives = 161/421 (38%), Gaps = 54/421 (12%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           + ++ +L R  ++SE   LL++ME  G    D   +           +IKEA   F+ + 
Sbjct: 52  VETFGKLNRLEKVSE---LLKEMESGGSFP-DITSYNVLLEAHAQSGSIKEAMGVFRQMQ 107

Query: 89  N----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV- 143
                P  +T+++L+++       +    +   ++ +  + +   Y  LI    + G   
Sbjct: 108 GAGCVPNAATYSILLNLYGRHGRYDDVRDLFLEMKVSNTEPNAATYNILINVFGEGGYFK 167

Query: 144 -------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                  D + ENV+P+   +  LI ACG+ G  + A  +L  MN +   V P       
Sbjct: 168 EVVTLFHDMVEENVEPNMETYEGLIFACGKGGLHEDAKKILLHMNEK--GVVPSSKAYTG 225

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI------------------------- 231
           +++A   A   + A   +  +++   K T E Y                           
Sbjct: 226 VIEAYGQAALYEEALVAFNTMNEVGSKPTVETYNSLIQMFAKGGLYKESEAILLKMGQSG 285

Query: 232 ----------AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
                      I    Q G +E A   Y +M K    PDE  L A++     AG VE + 
Sbjct: 286 VARNRDTFNGVIEAFRQGGQFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESE 345

Query: 282 EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
           E   E K  GI   ++ Y  ++   + A  W  A +L + M + ++      +  +I   
Sbjct: 346 EQFGEIKALGILPSVMCYCMMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGD 405

Query: 342 CDGDQLPKTME-VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
            D D   + +E V   +KS G       Y+ LL A       E    +L++A + G+ P 
Sbjct: 406 YDDDSNWQMVEYVFEKLKSEGCSLGVRFYNTLLEALWWLGQKERATRVLNEATKRGLFPE 465

Query: 401 L 401
           L
Sbjct: 466 L 466



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 71/136 (52%), Gaps = 2/136 (1%)

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           +++GI   I++Y++L+ AC+      +A  ++  M    + P ++T + L+      ++L
Sbjct: 2   RHEGIQADIVTYNTLLSACARRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRL 61

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            K  E+L +M+S G  P+  +Y++LL A  +   ++  + +  Q +  G +PN   +  +
Sbjct: 62  EKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSIL 121

Query: 408 IGMCSR--RYEKARTL 421
           + +  R  RY+  R L
Sbjct: 122 LNLYGRHGRYDDVRDL 137


>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 663

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 176/394 (44%), Gaps = 19/394 (4%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y+R I    +  RI    +LL DM++ G        +   + +CK Q  + +A +  + 
Sbjct: 230 TYSRWISALCQSNRIELVQELLVDMDKLGCSPDIWACNIYIYYLCK-QNRLPDALQMVEK 288

Query: 87  V----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     +P + T+  ++S    +K    A  +   + +  LK D      LI    K+ K
Sbjct: 289 MRTKGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSCGALIFGLCKNNK 348

Query: 143 VDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           VD  FE        +++    ++NALI+   ++G++D+A+ +++ M    +  +PD +T 
Sbjct: 349 VDEAFELASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRT--NGCEPDIVTY 406

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
             L+      G +++A ++ + +    +      Y   +    +T   + A +   D  +
Sbjct: 407 NILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHME 466

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
            G   D V  + LID      KV++A E+ +E   +G+    ++Y +L+    +   +  
Sbjct: 467 VGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYKGMQADAVTYGTLINGLFSVGYYNL 526

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
           A EL+E M + ++ P V+  N ++  LC      +   + S M    + P+T+T++ L+ 
Sbjct: 527 AEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSPDTVTFNTLIY 586

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              ++      L L    +  GV P+ + FK +I
Sbjct: 587 WLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLI 620



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 136/315 (43%), Gaps = 39/315 (12%)

Query: 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDR 172
           + L  V+  G+     LY  L++   ++GK D++ E    D +V    ++ C + G    
Sbjct: 144 EFLGRVKSQGVALHRSLYRILLSGYVRAGKFDSVIETF--DEMV----MSGCREFG---- 193

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
                         VD +   IG L+K C      D   + Y M        TP  Y+  
Sbjct: 194 --------------VDYNRY-IGVLVKNCC----FDLVEKYYDMALAKGFCLTPFTYSRW 234

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           I+   Q+   E    +  DM K G  PD    +  I +     ++  A +++++ + +G 
Sbjct: 235 ISALCQSNRIELVQELLVDMDKLGCSPDIWACNIYIYYLCKQNRLPDALQMVEKMRTKGT 294

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
           S  +++Y +++    + K + +A+ L+E M    LKP V +  ALI  LC  +++ +  E
Sbjct: 295 SPDVVTYQTVVSGLCDNKKFAEAIGLWEEMVKRDLKPDVFSCGALIFGLCKNNKVDEAFE 354

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK------C 406
           + S M +L +  +   Y+ L+    R   ++    ++S  + +G  P++V +       C
Sbjct: 355 LASRMLTLDIELSVCIYNALISGFWRAGSIDKAYKIISFMRTNGCEPDIVTYNILLNHYC 414

Query: 407 IIGMCSRRYEKARTL 421
            IGM     EKA  L
Sbjct: 415 TIGM----MEKAEKL 425



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 111/241 (46%), Gaps = 10/241 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
           P + T+N+L++   +    E A +++R ++ +G+  D   Y  L+    K+ ++D  F  
Sbjct: 401 PDIVTYNILLNHYCTIGMMEKAEKLIRKMETSGVNPDRYSYNQLLKGLCKTHQLDKAFAF 460

Query: 150 VKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           V          D V  N LI A  ++  V  A ++  EM  +   +  D +T G L+   
Sbjct: 461 VSDHMEVGGFCDTVSCNILIDAFCKTKKVKSALELFKEMGYK--GMQADAVTYGTLINGL 518

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            + G  + A E+++ +    I     +Y I ++   + G ++ A +++  M +K V PD 
Sbjct: 519 FSVGYYNLAEELFEQMLNAQIDPNVNLYNIMLHHLCKVGHFKRAQTIFSHMIQKEVSPDT 578

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  + LI + G   +   A  + ++ + +G+    +++  L+    +      A E++E+
Sbjct: 579 VTFNTLIYWLGKRSRAIEALNLFKDMRTRGVEPDTLTFKYLISGLLDEGKSTLAYEVWEY 638

Query: 322 M 322
           M
Sbjct: 639 M 639


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/421 (23%), Positives = 184/421 (43%), Gaps = 28/421 (6%)

Query: 11  FPYPNGKHANYAHDVSEQ-----LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDK 61
           F + N + A+   ++ E      + +YN +I    +  +I     +L  M+ +G L    
Sbjct: 124 FNFKNIEKASRVMEILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIV 183

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLV 118
            Y+    ++C  +K         +L+ +   PT+ T+ +L+           A ++L  +
Sbjct: 184 TYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEM 243

Query: 119 QEAGLKADCKLYTTLITTCAKSGKVDAMFENV--------KPDRVVFNALITACGQSGAV 170
              GL  D   Y  +I    K G V+   E +        +PD + +N L+ A    G  
Sbjct: 244 LARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKW 303

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVY 229
           D    ++AEM +     +P+ +T   L+ +    G++D A  V K MI K   + TP+ Y
Sbjct: 304 DEGEKLVAEMFS--RGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEK---ELTPDTY 358

Query: 230 TI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
           +    I+   + G  + A  + D M   G +PD V  + ++      G    A EI  + 
Sbjct: 359 SYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKL 418

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           +  G    + SY++++ A  +  +  +AL +   M S  + P   T N+LI+ LC    +
Sbjct: 419 RGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLV 478

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            + + +L DM+  G  P  I+Y+I+L+   +   ++  + + ++  E G  PN   +  +
Sbjct: 479 EEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILL 538

Query: 408 I 408
           I
Sbjct: 539 I 539



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 100/438 (22%), Positives = 186/438 (42%), Gaps = 59/438 (13%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR----FFNVCKSQKAIKEAFRFFKLVP 88
           NR  + G+ +E +  LE +  KG    D +   +    FFN     K I++A R  +++ 
Sbjct: 86  NRSCKAGKFNESLYFLECLVNKGYTP-DVILCTKLIKGFFNF----KNIEKASRVMEILE 140

Query: 89  N---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI----------- 134
           +   P +  +N ++S        E A QVL  ++  G   D   Y  +I           
Sbjct: 141 SHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGL 200

Query: 135 -------------------------TTCAKSGKVDAM-------FENVKPDRVVFNALIT 162
                                     T  + G  +AM          + PD   +NA+I 
Sbjct: 201 ALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIR 260

Query: 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
              + G V+RA +++  + ++    +PD I+   L++A  N G+ D   ++   +     
Sbjct: 261 GMCKEGMVERAAELITSLTSK--GCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGC 318

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
           +     Y+I I+   + G  + A SV   M +K + PD      LI      G+++ A  
Sbjct: 319 EPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIG 378

Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
           I+    + G    I++Y++++ A     N  +ALE++  ++ +   P VS+ N +I+AL 
Sbjct: 379 IMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALW 438

Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
                 + + ++  M S G+ P+ ITY+ L+    R   VE  + LL   ++ G  P ++
Sbjct: 439 SCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVI 498

Query: 403 MFKCI-IGMCS-RRYEKA 418
            +  + +G+C  RR + A
Sbjct: 499 SYNIVLLGLCKVRRIDDA 516



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 142/336 (42%), Gaps = 15/336 (4%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTL 92
           I +G I+E + LLE+M  +GLL     Y+A    +CK     + A     L      P +
Sbjct: 228 IVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDV 287

Query: 93  STFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK 151
            ++N+L+ +     K  EG   V  +    G + +   Y+ LI++  + G++D     +K
Sbjct: 288 ISYNILLRAFLNQGKWDEGEKLVAEMFSR-GCEPNKVTYSILISSLCRFGRIDEAISVLK 346

Query: 152 --------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                   PD   ++ LI+A  + G +D A  ++  M +  +   PD +    ++ A   
Sbjct: 347 VMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMIS--NGCLPDIVNYNTILAALCK 404

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
            G  ++A E++  +           Y   I+     GD   A  +   M  KG+ PDE+ 
Sbjct: 405 NGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEIT 464

Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
            ++LI      G VE A  +L + +  G    +ISY+ ++      +    A+ ++  M 
Sbjct: 465 YNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMI 524

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
               +P  +T   LI  +       + ME+ + + S
Sbjct: 525 EKGCRPNETTYILLIEGIGFAGWRTEAMELANSLFS 560



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 77/148 (52%), Gaps = 1/148 (0%)

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           E  L  L++ +  AGK   +   L+   N+G +  +I  + L+    N KN +KA  + E
Sbjct: 78  ETHLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVME 137

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            ++S   +P V   NA+I+  C  +Q+    +VL+ MK+ G  P+ +TY+I++ +   + 
Sbjct: 138 ILES-HTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRR 196

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            + + L +L Q   D  +P ++ +  +I
Sbjct: 197 KLGLALTVLDQLLLDNCMPTVITYTILI 224


>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
 gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
          Length = 1450

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 159/360 (44%), Gaps = 24/360 (6%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
           T+  +N +M V A S       ++  L++E G + D   + TLI    K+G++       
Sbjct: 255 TVKVYNAMMGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIE 314

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              +     ++PD + +N LI+AC ++  ++ A +V  +M A  H  +PD  T  A++  
Sbjct: 315 LLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVA--HHCEPDLWTYNAMISV 372

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G   +A +++  +           Y   +   ++ G+ E    + ++M K G   D
Sbjct: 373 YGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKD 432

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           E+  + +I   G  G+ + A ++ ++ K+ G +  +I+Y+ L+ +       ++A  +  
Sbjct: 433 EMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMS 492

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M +  +KPT+ T +ALI       +  +  E    M   G  P+ + YS++L    R +
Sbjct: 493 EMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFN 552

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCI------------IGMCSRRYEKARTLNEHVLSF 428
           + +  +    +   DG++P   +++ +            IG   R  E+   +N   +S+
Sbjct: 553 EPKRAMTFYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVRDMEEVCGMNPQAISY 612



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 170/384 (44%), Gaps = 25/384 (6%)

Query: 61  KVYHARFFNVCKSQK--AIKEAFRFFKLVP-NPTLSTFNMLMS--VCASSKDSEGAFQVL 115
           KVY+A      +S K   ++E F   +     P L +FN L++  + A       A ++L
Sbjct: 257 KVYNAMMGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAGEMTPNLAIELL 316

Query: 116 RLVQEAGLKADCKLYTTLITTCAKSGKV--------DAMFENVKPDRVVFNALITA---C 164
             V+ +GL+ D   Y TLI+ C+++  +        D +  + +PD   +NA+I+    C
Sbjct: 317 TEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRC 376

Query: 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224
           G SG  ++ F+ L     E     PD ++  + + A A  G V++ +++ + + K     
Sbjct: 377 GLSGKAEQLFNDL-----ESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGK 431

Query: 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284
               Y   I+   + G  + A  +Y DM   G  PD +  + LID  G   K+E A  ++
Sbjct: 432 DEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMM 491

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
            E  N G+   + +YS+L+   + A    +A E ++ M     +P     + ++      
Sbjct: 492 SEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRF 551

Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE-VGLMLLSQAKEDGVIPNLVM 403
           ++  + M    +M   G+ P    Y ++L      + VE +G ++    +  G+ P  + 
Sbjct: 552 NEPKRAMTFYKEMIHDGIMPEHSLYELMLRTLGNANKVEDIGRVVRDMEEVCGMNPQAIS 611

Query: 404 FKCIIGMCSRRYEKARTLNEHVLS 427
           +  + G C   Y++A  +    +S
Sbjct: 612 YILVKGDC---YDEAAKMLRRAIS 632



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 151/346 (43%), Gaps = 18/346 (5%)

Query: 88   PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVD 144
            P+PT+ + N L+         E  + V++ +Q+ G K        ++   A++G   +V 
Sbjct: 846  PSPTVDSINGLLQALIVDGRLEELYVVVQELQDIGFKISKSSILLMLDAFARAGNIFEVK 905

Query: 145  AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             ++  +K     P   ++  +     +   V     +L+EM  E     PD     +++K
Sbjct: 906  KIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEM--EEAGFKPDLSIWNSVLK 963

Query: 200  ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                     +  ++Y+ I +  ++   + Y I I    +    +    + D+M   G+ P
Sbjct: 964  MYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEGLVLMDEMRTVGLEP 1023

Query: 260  DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
                  +L+   G    VE A E+ +E ++ G  +    Y  +M    N+ +  KA  L+
Sbjct: 1024 KLDTYKSLVASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLF 1083

Query: 320  EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
              MK   ++PT++TM+ L+ +     Q  +  +VLS++K      +T+ YS ++ A  R 
Sbjct: 1084 SMMKDEGVEPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETDANLSTLPYSSVIDAYVRN 1143

Query: 380  DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
             D   G+  L Q KE+G+ P+  ++ C I        +A +L++H 
Sbjct: 1144 GDYNAGIQKLKQVKEEGLEPDHRIWTCFI--------RAASLSQHT 1181



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 81/380 (21%), Positives = 154/380 (40%), Gaps = 31/380 (8%)

Query: 39   GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPTLSTF 95
            GR S  +DLLE ++         +  A    +CK+Q+   A+KE     +L    + + F
Sbjct: 653  GRHSVALDLLELLKEHTPRSSQMITEALVVMLCKAQQLDTALKEYSNSRELGFTGSFTMF 712

Query: 96   NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRV 155
              L+  C  ++    A QV   ++  G+KA   LY +++    K G  +           
Sbjct: 713  EALIQCCLENELFTEASQVFSDMRFCGIKASECLYQSMMLLYCKMGFPETA--------- 763

Query: 156  VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
              + LI      G V     V  +                 +++A        +A  V  
Sbjct: 764  --HHLIDLTETDGTVLNNISVYVD-----------------VIEAYGRLKLWQKAESVAG 804

Query: 216  MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
             + +  I    +V+   I   + +G +E A +V++ M K G  P    ++ L+      G
Sbjct: 805  NMRQSCITVNRKVWNALIEAYAASGCYERARAVFNTMMKDGPSPTVDSINGLLQALIVDG 864

Query: 276  KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
            ++E  + ++QE ++ G  +   S   ++ A + A N  +  ++Y  MK+    P++    
Sbjct: 865  RLEELYVVVQELQDIGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYR 924

Query: 336  ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
             +   LC G Q+     +LS+M+  G  P+   ++ +L      DD      +  + KED
Sbjct: 925  VMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKED 984

Query: 396  GVIPNLVMFKCIIGMCSRRY 415
            G+ P+   +  +I M  R +
Sbjct: 985  GLEPDEDTYNILIVMYCRDH 1004



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 93/433 (21%), Positives = 172/433 (39%), Gaps = 89/433 (20%)

Query: 29  LHSYNRLI----RQGRISE--CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR 82
           L S+N LI    + G ++    I+LL ++ R GL   D + +    + C     ++EA  
Sbjct: 291 LVSFNTLINARLKAGEMTPNLAIELLTEVRRSGLRP-DIITYNTLISACSRASNLEEAVN 349

Query: 83  FFK-LVPN---PTLSTFNMLMSV---CASSKDSEGAFQVLR-----------------LV 118
            F  +V +   P L T+N ++SV   C  S  +E  F  L                    
Sbjct: 350 VFDDMVAHHCEPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFA 409

Query: 119 QEA---------------GLKADCKLYTTLITTCAKSGKVD---AMFENVK-----PDRV 155
           +E                G   D   Y T+I    K G+ D    ++ ++K     PD +
Sbjct: 410 REGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVI 469

Query: 156 VFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
            +  LI + G++  ++ A  +++EM N  V P      T  AL+   A AG+   A E +
Sbjct: 470 TYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPT---LRTYSALICGYAKAGKPVEAEETF 526

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             + +   +     Y++ ++   +  + + A + Y +M   G++P+      ++   G+A
Sbjct: 527 DCMLRSGTRPDQLAYSVMLDIHLRFNEPKRAMTFYKEMIHDGIMPEHSLYELMLRTLGNA 586

Query: 275 GKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSN--AKNWQKA---------------- 315
            KVE    ++++ +   G++   ISY  + G C +  AK  ++A                
Sbjct: 587 NKVEDIGRVVRDMEEVCGMNPQAISYILVKGDCYDEAAKMLRRAISDRYEIDRENLLSIL 646

Query: 316 ------------LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                       L+L E +K    + +     AL+  LC   QL   ++  S+ + LG  
Sbjct: 647 SSYSSSGRHSVALDLLELLKEHTPRSSQMITEALVVMLCKAQQLDTALKEYSNSRELGFT 706

Query: 364 PNTITYSILLVAC 376
            +   +  L+  C
Sbjct: 707 GSFTMFEALIQCC 719



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/345 (18%), Positives = 137/345 (39%), Gaps = 25/345 (7%)

Query: 35   LIRQGRISECIDLLEDMERKG--------LLDMDKVYHA-RFFNVCKSQKAIKEAFRFFK 85
            LI  GR+ E   ++++++  G        LL +D    A   F V K    +K A  F  
Sbjct: 860  LIVDGRLEELYVVVQELQDIGFKISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYF-- 917

Query: 86   LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TTCAKSGK 142
                P++  + ++  +    K       +L  ++EAG K D  ++ +++          K
Sbjct: 918  ----PSMHLYRVMAQLLCRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRK 973

Query: 143  VDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
               +++ +K     PD   +N LI    +         ++ EM      ++P   T  +L
Sbjct: 974  TTQIYQRIKEDGLEPDEDTYNILIVMYCRDHRPKEGLVLMDEM--RTVGLEPKLDTYKSL 1031

Query: 198  MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
            + +      V++A E+++ +     K     Y I +     +G    A  ++  M  +GV
Sbjct: 1032 VASFGKQQLVEQAEELFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGV 1091

Query: 258  IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             P    +  L+   G +G+ + A ++L   K    ++  + YSS++ A     ++   ++
Sbjct: 1092 EPTIATMHLLMVSYGSSGQPQEAEKVLSNLKETDANLSTLPYSSVIDAYVRNGDYNAGIQ 1151

Query: 318  LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
              + +K   L+P        I A        + + +L+ ++  G 
Sbjct: 1152 KLKQVKEEGLEPDHRIWTCFIRAASLSQHTSEAILLLNALRDTGF 1196



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 78/396 (19%), Positives = 159/396 (40%), Gaps = 43/396 (10%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           SYN  +    R+G + +  D+ E+M + G    D++ +    ++   Q     A + ++ 
Sbjct: 400 SYNSFLYAFAREGNVEKVKDICEEMVKIGF-GKDEMTYNTMIHMYGKQGQNDLALQLYRD 458

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +     NP + T+ +L+     +   E A  ++  +   G+K   + Y+ LI   AK+GK
Sbjct: 459 MKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSALICGYAKAGK 518

Query: 143 -------VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP-VDPDHIT 193
                   D M  +  +PD++ ++ ++    +     RA     EM   +H  + P+H  
Sbjct: 519 PVEAEETFDCMLRSGTRPDQLAYSVMLDIHLRFNEPKRAMTFYKEM---IHDGIMPEHSL 575

Query: 194 IGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              +++   NA +V D  R V  M     +      Y +    C            YD+ 
Sbjct: 576 YELMLRTLGNANKVEDIGRVVRDMEEVCGMNPQAISYILVKGDC------------YDEA 623

Query: 253 TK--KGVIPDEVFLS-----ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
            K  +  I D   +      +++     +G+   A ++L+  K        +   +L+  
Sbjct: 624 AKMLRRAISDRYEIDRENLLSILSSYSSSGRHSVALDLLELLKEHTPRSSQMITEALVVM 683

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
              A+    AL+ Y + + +    + +   ALI    + +   +  +V SDM+  G+  +
Sbjct: 684 LCKAQQLDTALKEYSNSRELGFTGSFTMFEALIQCCLENELFTEASQVFSDMRFCGIKAS 743

Query: 366 TITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
              Y S++L+ C +    E    L+   + DG + N
Sbjct: 744 ECLYQSMMLLYC-KMGFPETAHHLIDLTETDGTVLN 778



 Score = 46.2 bits (108), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 93/216 (43%), Gaps = 12/216 (5%)

Query: 90   PTLSTFNMLMSV-CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
            P   T+N+L+ + C   +  EG   ++  ++  GL+     Y +L+ +  K   V+    
Sbjct: 988  PDEDTYNILIVMYCRDHRPKEG-LVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEE 1046

Query: 146  MFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            +FE +     K DR  ++ ++     SG+  +A  + + M  E   V+P   T+  LM +
Sbjct: 1047 LFEELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDE--GVEPTIATMHLLMVS 1104

Query: 201  CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              ++GQ   A +V   + + +   +   Y+  I+   + GD+         + ++G+ PD
Sbjct: 1105 YGSSGQPQEAEKVLSNLKETDANLSTLPYSSVIDAYVRNGDYNAGIQKLKQVKEEGLEPD 1164

Query: 261  EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
                +  I  A  +     A  +L   ++ G  + I
Sbjct: 1165 HRIWTCFIRAASLSQHTSEAILLLNALRDTGFDLPI 1200


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 160/384 (41%), Gaps = 15/384 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L   GR++E  DL+ +M   G+L            +C      ++A+R F  + N   
Sbjct: 293 NGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALC-DMGCYEDAWRLFVDMKNKGC 351

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            P + T+  L+S    S   + A  +   +   G+  +   Y  LI    ++ ++   F 
Sbjct: 352 EPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      P+ V +N +I      G   +A  V+  M    H  +   +T   ++K 
Sbjct: 412 VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSAN--LVTYNTIIKG 469

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             ++G    A  +  ++     K     YT  I    +    E A  ++++M   G+ P+
Sbjct: 470 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPN 529

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           EV  +ALID      K++ A  +L+  K  G    + +Y+ L+   +   N+  A EL +
Sbjct: 530 EVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 589

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    + P V T  A+I  LC        +E+ + M   G  PN +TYS L+ A  ++ 
Sbjct: 590 VMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 649

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMF 404
            VE    L ++ +  G+IP+ + +
Sbjct: 650 KVEEAENLFAELERHGLIPDEITY 673



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 167/405 (41%), Gaps = 21/405 (5%)

Query: 21  YAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA 76
           +  ++S    +Y  +I    R+  +   + +   M ++G       Y      +C S + 
Sbjct: 242 FESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGR- 300

Query: 77  IKEAFRFFK-LVPNPTLSTFNMLMSVCASSKD---SEGAFQVLRLVQEAGLKADCKLYTT 132
           + EAF   + ++ +  L T +       +  D    E A+++   ++  G + +   YT 
Sbjct: 301 VNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTA 360

Query: 133 LITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
           LI+    SG +            + V P+ V +NALI    ++  +  AF VL  M    
Sbjct: 361 LISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGR-- 418

Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
           +   P+ +T   ++K     G   +A  V   + +         Y   I     +G+   
Sbjct: 419 NGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTS 478

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM- 303
           A  + D M   G  PDE   + LI       K+E+AF +  E  + G+    ++Y++L+ 
Sbjct: 479 ALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALID 538

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
           G C + K    A  L EHMK    +P V T N LI  L   +      E+   M   G+ 
Sbjct: 539 GYCKDEK-LDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIF 597

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           PN +TY+ ++    +     + L + ++  E G +PNL+ +  +I
Sbjct: 598 PNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLI 642



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 95/461 (20%), Positives = 198/461 (42%), Gaps = 31/461 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAFRFFKLVP 88
           L R G  +  +D    M  +G+     +Y+A    +CK      ++  +K+ F   ++ P
Sbjct: 190 LSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFES-EMSP 248

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           + T +  +M++  C    D + A QV   + + G + +   Y+TLI     SG+V+  F+
Sbjct: 249 D-TFTYTSMILGHC-RKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFD 306

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            ++        P        I A    G  + A+ +  +M  +    +P+  T  AL+  
Sbjct: 307 LIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNK--GCEPNVYTYTALISG 364

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              +G +  A  ++  + +  +      Y   IN   +    ++A  V + M + G  P+
Sbjct: 365 LCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPN 424

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + +I      G  + A  ++     +G S  +++Y++++    ++ N   AL + +
Sbjct: 425 IVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILD 484

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+    KP   +   LI   C   ++     + ++M   GLCPN +TY+ L+    + +
Sbjct: 485 LMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE 544

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNE---------HVLSFN 429
            ++    LL   K  G  PN+  +  +I   +++  +  A  L +         +V+++ 
Sbjct: 545 KLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYT 604

Query: 430 SGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
           +    + +N  TSLAL ++ + I  G +P +   S ++  L
Sbjct: 605 AMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 140/323 (43%), Gaps = 11/323 (3%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--------EN 149
           L+  C S +        L ++ ++GL+     Y+ L+   ++ G   A+         E 
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V+P+ +++NA+I A  + G V  A  ++ ++      + PD  T  +++        +D 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFES--EMSPDTFTYTSMILGHCRKHDLDS 268

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A +V+  + K   +     Y+  IN    +G    A  +  +M   G++P     +  I 
Sbjct: 269 ALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPII 328

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G  E A+ +  + KN+G    + +Y++L+     +   + A+ L+  M    + P
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFP 388

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
              T NALI  L +  ++     VL+ M   G  PN +TY+ ++       D +  ++++
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVM 448

Query: 390 SQAKEDGVIPNLVMFKCII-GMC 411
           +   + G   NLV +  II G C
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYC 471



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 147/362 (40%), Gaps = 19/362 (5%)

Query: 28  QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +++Y  LI      G +   I L   M R G+      Y+A   N+    + IK AF  
Sbjct: 354 NVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNA-LINILVENRRIKYAFVV 412

Query: 84  FKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             L+     +P + T+N ++       D + A  V+  + + G  A+   Y T+I     
Sbjct: 413 LNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 472

Query: 140 SGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           SG   +             KPD   +  LI    +   ++ AF +  EM  +   + P+ 
Sbjct: 473 SGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDD--GLCPNE 530

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T  AL+       ++D A  + + + +   +   + Y + I+  ++  ++  A  +   
Sbjct: 531 VTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKV 590

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M ++G+ P+ V  +A+ID     G    A E+  +   QG    +++YSSL+ A      
Sbjct: 591 MIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGK 650

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            ++A  L+  ++   L P   T   +I A     ++      L  M   G  P   TY +
Sbjct: 651 VEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGV 710

Query: 372 LL 373
           L+
Sbjct: 711 LI 712



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 77/376 (20%), Positives = 137/376 (36%), Gaps = 39/376 (10%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTF 95
           ++     LLE M+R G     + Y+     + K Q     A    K++      P + T+
Sbjct: 545 KLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTK-QNNFSGAEELCKVMIEEGIFPNVVTY 603

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFENVK- 151
             ++     +  +  A ++   + E G   +   Y++LI    + GKV+    +F  ++ 
Sbjct: 604 TAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELER 663

Query: 152 ----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA------- 200
               PD + +  +I A   SG V+ AF+ L  M        P   T G L+K        
Sbjct: 664 HGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKA--GCQPTLWTYGVLIKGLKNEYLL 721

Query: 201 --------------CANAGQVDRAREVYKM---IHKYNIKGTPEVYTIAINCCSQTGDWE 243
                         C+   Q      V  M   + + +   + +V    ++  S  G W 
Sbjct: 722 ADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWF 781

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  +   M  +G+ PD+   ++L+        V+ A  + +    QG  V +  Y  L+
Sbjct: 782 EANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 841

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
            A       ++A   +E+M      P       LI  L         ME L  M++    
Sbjct: 842 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYM 901

Query: 364 PNTITYSILLVACERK 379
           P+   Y+IL     +K
Sbjct: 902 PSFHIYTILAREASKK 917


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 152/332 (45%), Gaps = 11/332 (3%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKS--GKVDA 145
           +P + T+  L+  C    D   AF++   + E  +     +YT LI   C +S   + ++
Sbjct: 190 SPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAES 249

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
           MF  ++     P+   +N ++    +   V +A ++  EM  +   + P+ +T G L+  
Sbjct: 250 MFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGD--GLLPNVVTFGILIDG 307

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
                ++  AR+    +  + +     VY   I+   + G+   A S++ ++ K  ++PD
Sbjct: 308 LCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPD 367

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               S LI       ++E A  +LQE K +G     ++Y++L+       N +KA+E+  
Sbjct: 368 VFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCS 427

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    ++P + T + LI   C   ++   M + ++M   GL P+ + Y+ L+    +  
Sbjct: 428 QMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG 487

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           + +    L  + +E G+ PN+    C+I G+C
Sbjct: 488 NTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLC 519



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/416 (23%), Positives = 175/416 (42%), Gaps = 34/416 (8%)

Query: 22  AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           A   S  + +Y  LI    RQG   +   L ++M  K +     +Y      +C   + I
Sbjct: 186 ARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESR-I 244

Query: 78  KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
            EA   F+ + N    P L T+N +M         + A ++   +   GL  +   +  L
Sbjct: 245 SEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGIL 304

Query: 134 ITTCAKSGK--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I    K+ +        +D     V P+  V+N LI    ++G +  A  + +E+  E H
Sbjct: 305 IDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEI--EKH 362

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + PD  T   L+K      +++ A  + + + K         Y   I+   + G+ E A
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKA 422

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
             V   MT+KG+ P+ +  S LID    AGK+EAA  +  E   +G+   +++Y++L+  
Sbjct: 423 IEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDG 482

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL----------- 354
                N ++A  L++ M+   L P V T++ LI  LC   ++   +++            
Sbjct: 483 HFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGS 542

Query: 355 -SDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            ++     LC PN + Y+ L+        +       S  +  G+ P++  F CI+
Sbjct: 543 KTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDV--FTCIV 596



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 116/258 (44%), Gaps = 14/258 (5%)

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233
           F+VL+ +  E     P+    G L+ A +  G V+ A  VY   +K ++    +   + +
Sbjct: 113 FNVLSRL--ESSKFTPN--VFGVLIIAFSEMGLVEEALWVY---YKMDVLPAMQACNMVL 165

Query: 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
           +   + G ++    VY DM  +G  P+ V    LID     G    AF +  E   + I 
Sbjct: 166 DGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIF 225

Query: 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353
             ++ Y+ L+          +A  ++  M++  + P + T N ++   C    + K +E+
Sbjct: 226 PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALEL 285

Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCS 412
             +M   GL PN +T+ IL+    + D++      L      GV+PN+ ++ C+I G C 
Sbjct: 286 YXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYC- 344

Query: 413 RRYEKARTLNEHVLSFNS 430
               KA  L+E  LS +S
Sbjct: 345 ----KAGNLSE-ALSLHS 357



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/236 (22%), Positives = 98/236 (41%), Gaps = 28/236 (11%)

Query: 165 GQSG--AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222
           GQ G    ++A  +  +M  ++    PD +T+   + ACA+ G +D    ++  I    +
Sbjct: 723 GQKGDQRPNKALQLFRQM--QMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGL 780

Query: 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
                +    IN  S+ G+   A  ++D   KK V     + S ++  A H G+ E A +
Sbjct: 781 DTDLCLNNSLINMYSKCGEIGTARRLFDGTQKKDVT---TWTSMIVGHALH-GQAEEALQ 836

Query: 283 ILQEAKNQG----------------ISVGIISYSSLMGACSNAKNWQKALELYEHMK-SI 325
           +  E K                   +    +++  ++ ACS+A   ++  + +  MK   
Sbjct: 837 LFTEMKETNKRARKNKRNGEXESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDY 896

Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
            L+P +S    ++  LC    L +  E +  M    + PN + +  LL AC  + D
Sbjct: 897 SLRPRISHFGCMVDLLCRAGLLTEAYEFILKMP---VRPNAVVWRTLLGACSLQGD 949



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 35/207 (16%), Positives = 88/207 (42%), Gaps = 24/207 (11%)

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           ++A ++++ +   + +      T+A++ C+  G  +    ++  +  +G+  D    ++L
Sbjct: 731 NKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSL 790

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I+     G++  A  +    + + ++    +++S++   +     ++AL+L+  MK    
Sbjct: 791 INMYSKCGEIGTARRLFDGTQKKDVT----TWTSMIVGHALHGQAEEALQLFTEMKETNK 846

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
           +   +  N                    + +S  + PN +T+  +L+AC     VE G  
Sbjct: 847 RARKNKRNG-------------------EXESSLVLPNDVTFMGVLMACSHAGLVEEGKQ 887

Query: 388 LLSQAKED-GVIPNLVMFKCIIGMCSR 413
                KED  + P +  F C++ +  R
Sbjct: 888 HFRSMKEDYSLRPRISHFGCMVDLLCR 914


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 177/406 (43%), Gaps = 32/406 (7%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI------KEAFRFFKL 86
           N L R+GRI E + LL+ M   GL      Y      +CK    +      ++      +
Sbjct: 192 NGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHI 251

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---- 142
           +PN  + +  ++ S+C   + S+ A  +   +QE G+  D   Y ++I     SG+    
Sbjct: 252 IPNVVIYS-AIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309

Query: 143 ---VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
              +  M E  + PD V +NALI A  + G    A ++  EM      + P+ IT  +++
Sbjct: 310 EQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP--RGIIPNTITYSSMI 367

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                  ++D A  ++ ++           +   I+        +    +  +MT+ G++
Sbjct: 368 DGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLV 427

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALE 317
            D    + LI      G + AA ++LQE  + G+   I++  +L+ G C N K  + ALE
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK-LKDALE 486

Query: 318 LYEHMKSIK-----------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
           +++ M+  K           ++P V T N LI+ L +  +  +  E+  +M   G+ P+T
Sbjct: 487 MFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDT 546

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           ITYS ++    ++  ++    +          PN+V F  +I G C
Sbjct: 547 ITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 175/393 (44%), Gaps = 21/393 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           ++R  R    I L + MERK +      ++      C   K   A+    +  KL  +P 
Sbjct: 89  VVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPD 148

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
           + TF  L+  +C   + SE A      + E   + +   +TTL+    + G++       
Sbjct: 149 VVTFTTLLHGLCVEDRVSE-ALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALL 207

Query: 144 DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M E+ ++P ++ +  ++    + G    A ++L +M  EV  + P+ +   A++ +  
Sbjct: 208 DRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME-EVSHIIPNVVIYSAIIDSLC 266

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYT---IAINCCSQTGDWEFACSVYDDMTKKGVIP 259
             G+   A+ ++  + +  I   P+++T   + +  CS +G W  A  +  +M ++ + P
Sbjct: 267 KDGRHSDAQNLFTEMQEKGI--FPDLFTYNSMIVGFCS-SGRWSDAEQLLQEMLERKISP 323

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  +ALI+     GK   A E+  E   +GI    I+YSS++           A  ++
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M +    P + T N LI   C   ++   ME+L +M   GL  +T TY+ L+      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            D+   L LL +    G+ P++V    ++ G+C
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLC 476



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 157/359 (43%), Gaps = 26/359 (7%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI    ++G+  E  +L ++M  +G++     Y +     CK Q  +  A
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRLDAA 379

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F L+     +P L TFN L+     +K  +   ++L  + E GL AD   Y TLI  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 137 CAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAE----- 183
               G ++A  + ++        PD V  + L+     +G +  A ++   M        
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 184 -VHP---VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
             HP   V+PD  T   L+    N G+   A E+Y+ +    I      Y+  I+   + 
Sbjct: 500 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
              + A  ++D M  K   P+ V  + LI+    AG+V+   E+  E   +GI    I+Y
Sbjct: 560 SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITY 619

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
            +L+       N   AL++++ M S  + P   T+  ++T L   ++L + + +L  ++
Sbjct: 620 ITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 75/372 (20%), Positives = 146/372 (39%), Gaps = 19/372 (5%)

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            ++ A D+ ++M     P+ P  +    LM       + D    +Y+ + +  I+     
Sbjct: 59  GLEDAIDLFSDM-LRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYS 116

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           + I I C        FA S +  +TK G+ PD V  + L+       +V  A +   +  
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMF 176

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
                  ++++++LM          +A+ L + M    L+PT  T   ++  +C      
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 349 KTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC- 406
             + +L  M+ +  + PN + YS ++ +  +         L ++ +E G+ P+L  +   
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 407 IIGMCSR-RYEKA---------RTLNEHVLSFNSGRPQI--ENKWTSLALMVYREAIVAG 454
           I+G CS  R+  A         R ++  V+++N+       E K+   A  +Y E +  G
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFE-AEELYDEMLPRG 355

Query: 455 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAF 512
            IP     S ++         D  E +   +     +       +LIDG+   +      
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 513 SLLEEAASFGIV 524
            LL E    G+V
Sbjct: 416 ELLHEMTETGLV 427


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 165/397 (41%), Gaps = 58/397 (14%)

Query: 90  PTLSTFNMLMSVCAS-SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---A 145
           PTL T+N+++ V     +       +L  ++ AG++ D    +T+I  C + G VD   A
Sbjct: 207 PTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVA 266

Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL--- 197
            FE++K     P  V +NAL+   G++G    A  VL EM  E +   PD +T   L   
Sbjct: 267 FFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEM--EQNGCQPDAVTYNELAGT 324

Query: 198 --------------------------------MKACANAGQVDRAREVYKMIHKYNIKGT 225
                                           M A  N G+VD A  ++  + K      
Sbjct: 325 YARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPN 384

Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
              Y + +    +   +     +  +M++ G  P+ V  + ++   G  G  +    +L+
Sbjct: 385 VNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLE 444

Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
             ++ G+ +   +Y++L+ A     +   A ++Y  M S    P ++T NAL+  L    
Sbjct: 445 GMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQG 504

Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPNLVM- 403
                  ++S M++ G  PN  +YS+LL    +  +V     + ++    G V P+ V+ 
Sbjct: 505 DWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGSGAVFPSWVIL 564

Query: 404 -------FKC--IIGMCSRRYE-KARTLNEHVLSFNS 430
                  FKC  + GM +   E KAR  N  ++ FNS
Sbjct: 565 RTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNS 601



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 126/302 (41%), Gaps = 46/302 (15%)

Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG-AVDR 172
           G + D + YTT++   +++G+ +   E         V P  V +N ++   G+ G +  R
Sbjct: 169 GSRLDVRAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPR 228

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
              +L EM A    V+PD  T   ++ AC   G VD A                      
Sbjct: 229 IVALLDEMRAA--GVEPDGFTASTVIAACCRDGLVDEA---------------------- 264

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
                         + ++D+  +G  P  V  +AL+   G AG    A  +L E +  G 
Sbjct: 265 -------------VAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGC 311

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
               ++Y+ L G  + A  +++A    + M S  L P   T N ++TA  +  ++ + + 
Sbjct: 312 QPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALA 371

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
           +   MK  G  PN  TY+++L    +K    V L +L +    G  PN V +  ++ +C 
Sbjct: 372 LFDQMKKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCG 431

Query: 413 RR 414
           +R
Sbjct: 432 KR 433



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/445 (21%), Positives = 178/445 (40%), Gaps = 60/445 (13%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRF 83
           +YN L     R G   E    L+ M  KGLL     Y+     + NV K  +A+    + 
Sbjct: 317 TYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQM 376

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
            K    P ++T+N+++ +           ++L  +  +G   +   + T++  C K G  
Sbjct: 377 KKTGFVPNVNTYNLVLGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGME 436

Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
           D +           V+  R  +N LI A G+ G+   AF +  EM +      P   T  
Sbjct: 437 DYVTRVLEGMRSCGVELSRDTYNTLIAAYGRCGSRTNAFKMYNEMTSA--GFTPCITTYN 494

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-------------- 241
           AL+   +  G    A+ +   +     K   + Y++ + C ++ G+              
Sbjct: 495 ALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAAIENEVYGS 554

Query: 242 ------W---------EFAC-------SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
                 W          F C       + + ++  +G  PD V  ++++      G    
Sbjct: 555 GAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGYNPDLVIFNSMLSIYAKNGMYSK 614

Query: 280 AFEILQEAKNQGISVGIISYSSLM---GACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           A E+    K  G+S  +I+Y+SLM     CS  ++W+    L +   S  +KP V + N 
Sbjct: 615 ATEVFDSIKRSGLSPDLITYNSLMDMYAKCS--ESWEAEKILNQLKCSQTMKPDVVSYNT 672

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           +I   C    + +   VLS+M + G+ P  +TY  L+      +       ++    + G
Sbjct: 673 VINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAREVIGYMVQHG 732

Query: 397 VIPNLVMFKCII-GMC-SRRYEKAR 419
           + P  + ++ ++   C ++R+E+AR
Sbjct: 733 LKPMELTYRRVVESYCRAKRFEEAR 757



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 124/286 (43%), Gaps = 16/286 (5%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--AM 146
            P ++T+N L++V +   D   A  ++  ++  G K + + Y+ L+   AK G V   A 
Sbjct: 487 TPCITTYNALLNVLSRQGDWSTAQSIVSKMRTKGFKPNEQSYSLLLQCYAKGGNVAGIAA 546

Query: 147 FEN-------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            EN       V P  V+   L+ A  +   +D       E+ A  +  +PD +   +++ 
Sbjct: 547 IENEVYGSGAVFPSWVILRTLVIANFKCRRLDGMETAFQEVKARGY--NPDLVIFNSMLS 604

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC---CSQTGDWEFACSVYDDMTKKG 256
             A  G   +A EV+  I +  +      Y   ++    CS++  WE    +      + 
Sbjct: 605 IYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAKCSES--WEAEKILNQLKCSQT 662

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD V  + +I+     G V+ A  +L E    G++   ++Y +L+G  S+ + + +A 
Sbjct: 663 MKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSSLEMFSEAR 722

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           E+  +M    LKP   T   ++ + C   +  +    LS++    L
Sbjct: 723 EVIGYMVQHGLKPMELTYRRVVESYCRAKRFEEARGFLSEVSETDL 768


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 165/383 (43%), Gaps = 18/383 (4%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR----FFKLVP 88
           N L+ QGR  E   LLE M   G       +      +CK +  I+ AFR     F +  
Sbjct: 144 NALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCK-EGEIEAAFRVVDEMFMIES 202

Query: 89  --NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
             +P + TFN ++      +    A  V +   E G + +   Y+TLI   +K  K+D  
Sbjct: 203 GLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEA 262

Query: 147 FE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
            +          + + V ++ ++    + G ++ A  VL +M        PD +T   L+
Sbjct: 263 LQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDA--GCLPDAVTYNTLI 320

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
                  ++  A  + + + +     +   YT   +   ++G ++ A  + D M  +G  
Sbjct: 321 DGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCA 380

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGACSNAKNWQKALE 317
           P+ +  S+++D    AG+V  A    ++ A+++ ++  +I+YS+L+     A    +A E
Sbjct: 381 PNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYE 440

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
             E M      P V T + LI  LCD  ++   +E+   M   G  P+ +TY+ L+    
Sbjct: 441 FLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLC 500

Query: 378 RKDDVEVGLMLLSQAKEDGVIPN 400
           R   V+    L  Q + DG+ P+
Sbjct: 501 RASRVDEAFDLFQQMRSDGLSPD 523



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 86/400 (21%), Positives = 170/400 (42%), Gaps = 20/400 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +Y  LI    +Q R+ E  DL E+   KG       Y+     +CK  + I+ A   +  
Sbjct: 32  TYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGR-IENALTLYDD 90

Query: 87  VP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +       PT+ T++ L+       + +   ++L  +   G   +   Y TL+      G
Sbjct: 91  MAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQG 150

Query: 142 KVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           +    F  ++        P+ + F  +I    + G ++ AF V+ EM      + PD IT
Sbjct: 151 RSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVIT 210

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
             +++       ++  A  V+K   +   +     Y+  I+  S+    + A  +   M 
Sbjct: 211 FNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMV 270

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + G   + V  S ++D     G++E A  +L++ ++ G     ++Y++L+      +  +
Sbjct: 271 ELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLR 330

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +A+ L   M      P+V T   L   LC   +  + +E+L  M + G  PN ITYS ++
Sbjct: 331 EAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIV 390

Query: 374 VACERKDDVEVGLMLLSQ-AKEDGVIPNLVMFKCII-GMC 411
               +   V   L    + A+++ V P+++ +  +I G+C
Sbjct: 391 DGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLC 430



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/369 (21%), Positives = 161/369 (43%), Gaps = 24/369 (6%)

Query: 69  NVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
            +CKS+K  K    F ++V     P + T+  L+      +  + A+ +    +  G   
Sbjct: 4   GLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHP 63

Query: 126 DCKLYTTLITTCAKSGKVD---------AMFENVKPDRVVFNALITACGQSGAVDRAFDV 176
               Y T+I    K G+++         A+    +P  V ++ LI    +   VD+   +
Sbjct: 64  TVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKL 123

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE---VYTIAI 233
           L EM        P+ +T   L+ A    G   R++E + ++ +    G P     + + I
Sbjct: 124 LEEMAG--RGCAPNAVTYNTLVNALLGQG---RSKEAFSLLEQMAANGCPPELITFGLII 178

Query: 234 NCCSQTGDWEFACSVYDD--MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
               + G+ E A  V D+  M + G+ PD +  ++++D      ++  A  + + A  +G
Sbjct: 179 KGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERG 238

Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
               +++YS+L+   S      +AL+L   M  +  +    T + ++  L    ++   +
Sbjct: 239 CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAV 298

Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
            VL  M+  G  P+ +TY+ L+    ++  +   + LL +  E G  P++V +  +  G+
Sbjct: 299 VVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGL 358

Query: 411 C-SRRYEKA 418
           C S R+++A
Sbjct: 359 CRSGRFDEA 367



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 94/410 (22%), Positives = 173/410 (42%), Gaps = 20/410 (4%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L R   + +   LLE+M  +G    + V +    N    Q   KEAF    ++  N   P
Sbjct: 111 LCRDHEVDKGCKLLEEMAGRGCAP-NAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPP 169

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLR--LVQEAGLKADCKLYTTLITTCAKSGKV----- 143
            L TF +++       + E AF+V+    + E+GL  D   + +++    K  ++     
Sbjct: 170 ELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHN 229

Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
               A+    +P+ V ++ LI    +   +D A  +LA+M  E+     + +T   ++  
Sbjct: 230 VFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKM-VELG-CRANTVTYSTVVDG 287

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
               G+++ A  V + +           Y   I+   +      A  +  +M + G  P 
Sbjct: 288 LLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPS 347

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + L      +G+ + A EIL     +G +   I+YSS++     A    +AL  +E
Sbjct: 348 VVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFE 407

Query: 321 HM-KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
            M +   + P V   +ALI  LC   ++ +  E L  M   G  P+ +T+SIL+      
Sbjct: 408 KMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDA 467

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLS 427
             ++ GL L     E G +P++V +  ++    R  R ++A  L + + S
Sbjct: 468 GRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRS 517



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 132/279 (47%), Gaps = 23/279 (8%)

Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
           A +++  M  K + PD V   ALID  G   +V+ A+++ +EA+ +G    +++Y++++ 
Sbjct: 14  AITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMID 73

Query: 305 ACSNAKNWQKALELYEHMK-SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
                   + AL LY+ M      +PTV T + LI  LC   ++ K  ++L +M   G  
Sbjct: 74  GLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCA 133

Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKA--RT 420
           PN +TY+ L+ A   +   +    LL Q   +G  P L+ F  II G+C     +A  R 
Sbjct: 134 PNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRV 193

Query: 421 LNE----------HVLSFNSGRPQIENKWTSL-ALMVYREAIVAGTIPTVEVVSKVLGCL 469
           ++E           V++FNS    +  +   L A  V++ A+  G  P V   S ++  L
Sbjct: 194 VDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGL 253

Query: 470 QLPYNAD----IRERLVENLGVSADALKRSNLCSLIDGF 504
                 D    +  ++VE LG  A+ +  S   +++DG 
Sbjct: 254 SKMAKMDEALQLLAKMVE-LGCRANTVTYS---TVVDGL 288



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 151/355 (42%), Gaps = 20/355 (5%)

Query: 35  LIRQGRISECIDLLEDME--RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----P 88
           L ++G I     ++++M     GL      +++    +CK Q+ I +A   FK       
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQR-ILDAHNVFKRALERGC 239

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
            P + T++ L+   +     + A Q+L  + E G +A+   Y+T++    K G+++    
Sbjct: 240 RPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVV 299

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMK 199
            ++        PD V +N LI    +   +  A  +L EM  A  HP     +T   L  
Sbjct: 300 VLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHP---SVVTYTTLCH 356

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI- 258
               +G+ D A E+   +           Y+  ++   + G    A   ++ M +  V+ 
Sbjct: 357 GLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVA 416

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           P  +  SALID    AGK++ A+E L+     G    ++++S L+    +A      LEL
Sbjct: 417 PHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLEL 476

Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
           +  M      P + T   L+  LC   ++ +  ++   M+S GL P+  T   ++
Sbjct: 477 FRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMI 531



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 126/288 (43%), Gaps = 15/288 (5%)

Query: 133 LITTCAKSGKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE- 183
           +I    KS KVD    +F+      + PD V + ALI   G+   V  A+D+  E  A+ 
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDW 242
            HP     +T   ++      G+++ A  +Y  M   +  + T   Y+  I+   +  + 
Sbjct: 61  CHPT---VVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEV 117

Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
           +  C + ++M  +G  P+ V  + L++     G+ + AF +L++    G    +I++  +
Sbjct: 118 DKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLI 177

Query: 303 MGACSNAKNWQKALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           +         + A  + + M  I+  L P V T N+++  LC   ++     V       
Sbjct: 178 IKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALER 237

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           G  PN +TYS L+    +   ++  L LL++  E G   N V +  ++
Sbjct: 238 GCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVV 285



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 108/243 (44%), Gaps = 13/243 (5%)

Query: 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-------GKVDAMFE-NVKPDRVVFNAL 160
           E A  VLR +++AG   D   Y TLI    K        G +  M E    P  V +  L
Sbjct: 295 EDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTL 354

Query: 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220
                +SG  D A ++L  M A      P+ IT  +++     AG+V  A   ++ + + 
Sbjct: 355 CHGLCRSGRFDEAVEILDYMAA--RGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARD 412

Query: 221 NIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278
            +   P V  Y+  I+   + G  + A    + M + G IPD V  S LI+    AG+++
Sbjct: 413 EVVA-PHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRID 471

Query: 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338
              E+ +    +G    +++Y++L+     A    +A +L++ M+S  L P  ST   +I
Sbjct: 472 TGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMI 531

Query: 339 TAL 341
             L
Sbjct: 532 HGL 534


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 192/422 (45%), Gaps = 22/422 (5%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLS 93
           +G+I++ + L  +M  KG++     +      + ++   I++A + F  +      P   
Sbjct: 485 KGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAG-LIRDAVKLFTEMAEWNVKPNRV 543

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAM 146
           T+N+++       +   AF+ L  + E G+  D   Y  LI     +G+       VD +
Sbjct: 544 TYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGL 603

Query: 147 FE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
            + N + + + +  L+    + G ++ A  V  +M   +  VD D +  G L+       
Sbjct: 604 HKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMG--LRGVDLDLVCYGVLIDGSLKHK 661

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
                  + K +H   +K    +YT  I+  S+TGD++ A  ++D M  +G +P+EV  +
Sbjct: 662 DRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYT 721

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNA-KNWQKALELYEHMK 323
           A+I+    AG V  A EIL      G SV   ++Y   +   +    + +KA+EL+  + 
Sbjct: 722 AVINGLCKAGFVNEA-EILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAIL 780

Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
              L  T +T N LI   C   ++ +  E+++ M   G+ P+ ITY+ ++    R++DV+
Sbjct: 781 KGLLANT-ATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVK 839

Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE--KARTLNEHVLSFNSGRPQIENKWTS 441
             + L +   E G+ P+ V +  +I  C    E  KA  L   +L     +P  E   T+
Sbjct: 840 KAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLR-QGLKPNTETSETT 898

Query: 442 LA 443
           ++
Sbjct: 899 IS 900



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 147/333 (44%), Gaps = 15/333 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P +  +  ++      KD   A +++  ++  G   +   Y  LI    K  KV      
Sbjct: 225 PDVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGI 284

Query: 144 --DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV--DPDHITIGALMK 199
             D   + +KPD V +  L+  CG      + F+V  EM  E+  +   P    + +L++
Sbjct: 285 KKDLAGKELKPDVVTYCTLV--CGLCKV--QEFEVGLEMIDEMLRLRFSPSEAAVSSLVE 340

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
                G+V+ A  + K + ++ +     VY   I+   +  +++ A  ++D M K G+ P
Sbjct: 341 GLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCP 400

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           ++V  S LID     GK++ A   L E  + G+   +  Y+SL+       +   A  L 
Sbjct: 401 NDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLM 460

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M + KL+PTV T  +L+   C   ++ K + +  +M   G+ P+  T++ LL    R 
Sbjct: 461 AEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRA 520

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
             +   + L ++  E  V PN V +  +I G C
Sbjct: 521 GLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYC 553



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 86/427 (20%), Positives = 176/427 (41%), Gaps = 52/427 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK-----LVPN 89
           L ++G++ E ++L++ +   G+     VY+A   ++CK +   +    F +     L PN
Sbjct: 342 LRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPN 401

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
               T+++L+ +       + A   L  + + GLK     Y +LI    K G + A    
Sbjct: 402 DV--TYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESL 459

Query: 146 ----MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
               + + ++P  V + +L+      G +++A  +  EM  +   + P   T   L+   
Sbjct: 460 MAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGK--GIVPSIYTFTTLLSGL 517

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD- 260
             AG +  A +++  + ++N+K     Y + I    + G+   A    ++M +KG++PD 
Sbjct: 518 FRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDT 577

Query: 261 -------------------EVFLSAL---------IDFAG------HAGKVEAAFEILQE 286
                              +VF+  L         I + G        GK+E A  + Q+
Sbjct: 578 YSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQD 637

Query: 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
              +G+ + ++ Y  L+      K+ +  L L + M    LKP      ++I A      
Sbjct: 638 MGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGD 697

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
             +   +   M + G  PN +TY+ ++    +   V    +L S+ +    +PN V + C
Sbjct: 698 FKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGC 757

Query: 407 IIGMCSR 413
            + + ++
Sbjct: 758 FLDILTK 764



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 155/359 (43%), Gaps = 29/359 (8%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I     +G +S+  + L +M  KG++     Y      +C + +A  EA  F   
Sbjct: 544 TYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQA-SEAKVFVDG 602

Query: 87  VP--NPTLSTF---NMLMSVCASSKDSEGAFQVLRLVQEAGLKA---DCKLYTTLITTCA 138
           +   N  L+      +L   C   K  E     L + Q+ GL+    D   Y  LI    
Sbjct: 603 LHKGNCELNEICYTGLLHGFCREGKLEEA----LSVCQDMGLRGVDLDLVCYGVLIDGSL 658

Query: 139 KS-------GKVDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           K        G +  M +  +KPD V++ ++I A  ++G    AF +   M  E     P+
Sbjct: 659 KHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINE--GCVPN 716

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ-TGDWEFACSVY 249
            +T  A++     AG V+ A  +   +   N       Y   ++  ++  GD + A  ++
Sbjct: 717 EVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELH 776

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           + + K G++ +    + LI      G++E A E++      G+S   I+Y++++      
Sbjct: 777 NAILK-GLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRR 835

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            + +KA+EL+  M    ++P     N LI   C   ++ K  E+ ++M   GL PNT T
Sbjct: 836 NDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTET 894



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 11/221 (4%)

Query: 213 VYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
           V+KM+    +   PEV T++  ++   +   +  A  ++DDM   G+ PD    + +I  
Sbjct: 178 VFKMMMT-KVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRS 236

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKP 329
                 +  A E++ + +  G  V I+ Y+ L+ G C   K W+ A+ + + +   +LKP
Sbjct: 237 LCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVWE-AVGIKKDLAGKELKP 295

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
            V T   L+  LC   +    +E++ +M  L   P+    S L+    ++  VE  L L+
Sbjct: 296 DVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLV 355

Query: 390 SQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFN 429
            +  E GV PN+ ++  +I  +C     K R  +E  L F+
Sbjct: 356 KRVAEFGVSPNIFVYNALIDSLC-----KGRNFDEAELLFD 391



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/226 (19%), Positives = 98/226 (43%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+  T+ AL+           A E++  +    I+    +YT  I    +  D   A  +
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKEM 249

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
              M   G   + V  + LID      KV  A  I ++   + +   +++Y +L+     
Sbjct: 250 IVQMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCK 309

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            + ++  LE+ + M  ++  P+ + +++L+  L    ++ + + ++  +   G+ PN   
Sbjct: 310 VQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFV 369

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           Y+ L+ +  +  + +   +L  +  + G+ PN V +  +I M  RR
Sbjct: 370 YNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRR 415



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 125/309 (40%), Gaps = 84/309 (27%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           LH +    R+G++ E + + +DM  +G+ D+D                            
Sbjct: 619 LHGF---CREGKLEEALSVCQDMGLRGV-DLD---------------------------- 646

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
              L  + +L+      KD +    +L+ + + GLK D  +YT++I   +K+G     F 
Sbjct: 647 ---LVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFG 703

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD--PDHITIGALM 198
                  E   P+ V + A+I    ++G V+ A  + ++M     P +  P+ +T G  +
Sbjct: 704 IWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKM----RPGNSVPNQVTYGCFL 759

Query: 199 KACANA-GQVDRAREVYKMIHK--------YN--IKG----------------------T 225
                  G + +A E++  I K        YN  I+G                      +
Sbjct: 760 DILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVS 819

Query: 226 PE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
           P+   YT  I+   +  D + A  +++ MT+KG+ PD V  + LI     AG++  A E+
Sbjct: 820 PDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATEL 879

Query: 284 LQEAKNQGI 292
             E   QG+
Sbjct: 880 RNEMLRQGL 888


>gi|225439759|ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
           chloroplastic [Vitis vinifera]
 gi|297741486|emb|CBI32618.3| unnamed protein product [Vitis vinifera]
          Length = 842

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/440 (21%), Positives = 183/440 (41%), Gaps = 75/440 (17%)

Query: 34  RLIRQGRISECIDLLEDME------RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
           R++  G++ E ++L+E ++      +K L  +D      F  +C +++    A R+  ++
Sbjct: 153 RILNCGQVEEVVELIEILDGFHFPVKKLLEPLD------FIKICVNKRNPNLAVRYACIL 206

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA------KSG 141
           P+  +  F  ++      +D   A       ++  +  +   Y T+I  C       KS 
Sbjct: 207 PHAQI-LFCTIIHEFGKKRDLGSALTAFEASKQKLIGPNMYCYRTMIDVCGLCSHYQKSR 265

Query: 142 KV--DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
            +  + + + + P+  VFN+L+         D ++      N +   V  D  +   L+K
Sbjct: 266 YIYEELLAQKITPNIYVFNSLMNV----NVHDLSYTFNVYKNMQNLGVTADMASYNILLK 321

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEV----YTIAINCCSQTGDWEFACSVYDDMTKK 255
           AC  AG+VD A+E+Y+ +      G  ++    Y+  I   +    W+ A  + +DM   
Sbjct: 322 ACCVAGRVDLAQEIYREVQNLESNGMLKLDVFTYSTIIKVFADAKLWQMALKIKEDMLSA 381

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           GVIP+ V  SALI    +AG  E A ++ +E    G       Y+ L+ AC  A  + +A
Sbjct: 382 GVIPNTVTWSALISSCANAGITEQAIQLFKEMLLAGCEPNSQCYNILLHACVEACQYDRA 441

Query: 316 LELYEHMK-------------------SIKLKPTVSTM---------------------- 334
             L++  K                    +K +  +++M                      
Sbjct: 442 FRLFQSWKDSRFQEISGGTGNGNTVGVELKHQNCITSMPNCLSNSHHLSFSKSFPFTPTT 501

Query: 335 ---NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
              N L+ A   G    +   ++ +MK+ GL PN I++SIL+  C    ++   + +L  
Sbjct: 502 TTYNILMKAC--GTDYYRAKALMDEMKTAGLSPNHISWSILIDICGGTGNIVGAVRILKT 559

Query: 392 AKEDGVIPNLVMFKCIIGMC 411
            +E G+ P++V +   I  C
Sbjct: 560 MREAGIKPDVVAYTTAIKYC 579



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 129/305 (42%), Gaps = 60/305 (19%)

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQE----AGLKADCKLYTTLITTCAKSG------ 141
           ++++N+L+  C  +   + A ++ R VQ       LK D   Y+T+I   A +       
Sbjct: 313 MASYNILLKACCVAGRVDLAQEIYREVQNLESNGMLKLDVFTYSTIIKVFADAKLWQMAL 372

Query: 142 --KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
             K D +   V P+ V ++ALI++C  +G  ++A  +  EM   +   +P+      L+ 
Sbjct: 373 KIKEDMLSAGVIPNTVTWSALISSCANAGITEQAIQLFKEM--LLAGCEPNSQCYNILLH 430

Query: 200 ACANAGQVDRAREVYK-----------------------MIHKYNIKGTPE--------- 227
           AC  A Q DRA  +++                       + H+  I   P          
Sbjct: 431 ACVEACQYDRAFRLFQSWKDSRFQEISGGTGNGNTVGVELKHQNCITSMPNCLSNSHHLS 490

Query: 228 ------------VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
                        Y I +  C    D+  A ++ D+M   G+ P+ +  S LID  G  G
Sbjct: 491 FSKSFPFTPTTTTYNILMKACGT--DYYRAKALMDEMKTAGLSPNHISWSILIDICGGTG 548

Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
            +  A  IL+  +  GI   +++Y++ +  C  +KN + A  L+  MK  +++P + T N
Sbjct: 549 NIVGAVRILKTMREAGIKPDVVAYTTAIKYCVESKNLKIAFSLFAEMKRYQIQPNLVTYN 608

Query: 336 ALITA 340
            L+ A
Sbjct: 609 TLLRA 613



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 31/364 (8%)

Query: 72  KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
           +  + I E     K+ PN  +  FN LM+V  +  D    F V + +Q  G+ AD   Y 
Sbjct: 262 QKSRYIYEELLAQKITPN--IYVFNSLMNV--NVHDLSYTFNVYKNMQNLGVTADMASYN 317

Query: 132 TLITTCAKSGKVDAMFE------------NVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
            L+  C  +G+VD   E             +K D   ++ +I     +     A  +  +
Sbjct: 318 ILLKACCVAGRVDLAQEIYREVQNLESNGMLKLDVFTYSTIIKVFADAKLWQMALKIKED 377

Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
           M +    V P+ +T  AL+ +CANAG  ++A +++K +     +   + Y I ++ C + 
Sbjct: 378 MLSA--GVIPNTVTWSALISSCANAGITEQAIQLFKEMLLAGCEPNSQCYNILLHACVEA 435

Query: 240 GDWEFACSVYD---DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS--- 293
             ++ A  ++    D   + +       + +     H   + +    L  + +   S   
Sbjct: 436 CQYDRAFRLFQSWKDSRFQEISGGTGNGNTVGVELKHQNCITSMPNCLSNSHHLSFSKSF 495

Query: 294 ---VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD-QLPK 349
                  +Y+ LM AC    ++ +A  L + MK+  L P   + + LI  +C G   +  
Sbjct: 496 PFTPTTTTYNILMKACGT--DYYRAKALMDEMKTAGLSPNHISWSILID-ICGGTGNIVG 552

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
            + +L  M+  G+ P+ + Y+  +  C    ++++   L ++ K   + PNLV +  ++ 
Sbjct: 553 AVRILKTMREAGIKPDVVAYTTAIKYCVESKNLKIAFSLFAEMKRYQIQPNLVTYNTLLR 612

Query: 410 MCSR 413
             SR
Sbjct: 613 ARSR 616



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 149/351 (42%), Gaps = 35/351 (9%)

Query: 25  VSEQLHSYNRLIRQGRISECIDL-------LEDMERKGLLDMDKVYHARFFNVCKSQK-- 75
           V+  + SYN L++   ++  +DL       ++++E  G+L +D   ++    V    K  
Sbjct: 309 VTADMASYNILLKACCVAGRVDLAQEIYREVQNLESNGMLKLDVFTYSTIIKVFADAKLW 368

Query: 76  ----AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
                IKE      ++PN    T++ L+S CA++  +E A Q+ + +  AG + + + Y 
Sbjct: 369 QMALKIKEDMLSAGVIPNTV--TWSALISSCANAGITEQAIQLFKEMLLAGCEPNSQCYN 426

Query: 132 TLITTCAKSGKVD-----------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
            L+  C ++ + D           + F+ +       N +         +    + L+  
Sbjct: 427 ILLHACVEACQYDRAFRLFQSWKDSRFQEISGGTGNGNTVGVELKHQNCITSMPNCLSNS 486

Query: 181 N----AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
           +    ++  P  P   T   LMKAC       RA+ +   +    +      ++I I+ C
Sbjct: 487 HHLSFSKSFPFTPTTTTYNILMKACGT--DYYRAKALMDEMKTAGLSPNHISWSILIDIC 544

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
             TG+   A  +   M + G+ PD V  +  I +   +  ++ AF +  E K   I   +
Sbjct: 545 GGTGNIVGAVRILKTMREAGIKPDVVAYTTAIKYCVESKNLKIAFSLFAEMKRYQIQPNL 604

Query: 297 ISYSSLMGACS---NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
           ++Y++L+ A S   +    Q+ L +Y+HM+    K     +  LI   C+G
Sbjct: 605 VTYNTLLRARSRYGSLHEVQQCLAIYQHMRKAGYKSNDYYLKELIEEWCEG 655



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 58/271 (21%), Positives = 110/271 (40%), Gaps = 60/271 (22%)

Query: 190 DHITIGALMKACA---NAGQVDRAREVYKMIHKYN--IKGTPE---VYTIAINCCSQTGD 241
           D  T+  L K C    N GQV+   E+ +++  ++  +K   E      I +N  +    
Sbjct: 140 DGSTLELLSKECRRILNCGQVEEVVELIEILDGFHFPVKKLLEPLDFIKICVNKRNPNLA 199

Query: 242 WEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
             +AC          ++P  ++    +I   G    + +A    + +K + I   +  Y 
Sbjct: 200 VRYAC----------ILPHAQILFCTIIHEFGKKRDLGSALTAFEASKQKLIGPNMYCYR 249

Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
           +++  C    ++QK+  +YE + + K+ P +   N+L+    +   L  T  V  +M++L
Sbjct: 250 TMIDVCGLCSHYQKSRYIYEELLAQKITPNIYVFNSLMNV--NVHDLSYTFNVYKNMQNL 307

Query: 361 GLCPNTITYSILLVACERKDDVEV--------------GLMLLS---------------- 390
           G+  +  +Y+ILL AC     V++              G++ L                 
Sbjct: 308 GVTADMASYNILLKACCVAGRVDLAQEIYREVQNLESNGMLKLDVFTYSTIIKVFADAKL 367

Query: 391 -----QAKED----GVIPNLVMFKCIIGMCS 412
                + KED    GVIPN V +  +I  C+
Sbjct: 368 WQMALKIKEDMLSAGVIPNTVTWSALISSCA 398


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 97/407 (23%), Positives = 177/407 (43%), Gaps = 34/407 (8%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK------- 85
           N L R+GRI E + LL+ M   GL      Y      +CK    +  A    +       
Sbjct: 192 NGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVS-ALNLLRKMEEVSH 250

Query: 86  LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--- 142
           ++PN  + +  ++ S+C   + S+ A  +   +QE G+  D   Y ++I     SG+   
Sbjct: 251 IIPNVVIYS-AIIDSLCKDGRHSD-AQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSD 308

Query: 143 ----VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
               +  M E  + PD V +NALI A  + G    A ++  EM      + P+ IT  ++
Sbjct: 309 AEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLP--RGIIPNTITYSSM 366

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +       ++D A  ++ ++           +   I+        +    +  +MT+ G+
Sbjct: 367 IDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGL 426

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKAL 316
           + D    + LI      G + AA ++LQE  + G+   I++  +L+ G C N K  + AL
Sbjct: 427 VADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGK-LKDAL 485

Query: 317 ELYEHMKSIK-----------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           E+++ M+  K           ++P V T N LI+ L +  +  +  E+  +M   G+ P+
Sbjct: 486 EMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 545

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           TITYS ++    ++  ++    +          PN+V F  +I G C
Sbjct: 546 TITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYC 592



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 176/393 (44%), Gaps = 21/393 (5%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
           ++R  R    I L + MERK +      ++      C   K   A+    +  KL  +P 
Sbjct: 89  VVRMERPDLVISLYQKMERKQIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPD 148

Query: 92  LSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
           + TF  L+  +C   + SE A  +   + E   + +   +TTL+    + G++       
Sbjct: 149 VVTFTTLLHGLCVEDRVSE-ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALL 207

Query: 144 DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
           D M E+ ++P ++ +  ++    + G    A ++L +M  EV  + P+ +   A++ +  
Sbjct: 208 DRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME-EVSHIIPNVVIYSAIIDSLC 266

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYT---IAINCCSQTGDWEFACSVYDDMTKKGVIP 259
             G+   A+ ++  + +  I   P+++T   + +  CS +G W  A  +  +M ++ + P
Sbjct: 267 KDGRHSDAQNLFTEMQEKGI--FPDLFTYNSMIVGFCS-SGRWSDAEQLLQEMLERKISP 323

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D V  +ALI+     GK   A E+  E   +GI    I+YSS++           A  ++
Sbjct: 324 DVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMF 383

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M +    P + T N LI   C   ++   ME+L +M   GL  +T TY+ L+      
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            D+   L LL +    G+ P++V    ++ G+C
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLC 476



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 157/359 (43%), Gaps = 26/359 (7%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +S  + +YN LI    ++G+  E  +L ++M  +G++     Y +     CK Q  +  A
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCK-QNRLDAA 379

Query: 81  FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              F L+     +P L TFN L+     +K  +   ++L  + E GL AD   Y TLI  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 137 CAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAE----- 183
               G ++A  + ++        PD V  + L+     +G +  A ++   M        
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLD 499

Query: 184 -VHP---VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
             HP   V+PD  T   L+    N G+   A E+Y+ +    I      Y+  I+   + 
Sbjct: 500 ASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQ 559

Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
              + A  ++D M  K   P+ V  + LI+    AG+V+   E+  E   +GI    I+Y
Sbjct: 560 SRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITY 619

Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
            +L+       N   AL++++ M S  + P   T+  ++T L   ++L + + +L  ++
Sbjct: 620 ITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 75/372 (20%), Positives = 146/372 (39%), Gaps = 19/372 (5%)

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            ++ A D+ ++M     P+ P  +    LM       + D    +Y+ + +  I+     
Sbjct: 59  GLEDAIDLFSDM-LRSRPL-PSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYS 116

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           + I I C        FA S +  +TK G+ PD V  + L+       +V  A  +  +  
Sbjct: 117 FNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMF 176

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
                  ++++++LM          +A+ L + M    L+PT  T   ++  +C      
Sbjct: 177 ETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTV 236

Query: 349 KTMEVLSDMKSLG-LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC- 406
             + +L  M+ +  + PN + YS ++ +  +         L ++ +E G+ P+L  +   
Sbjct: 237 SALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 407 IIGMCSR-RYEKA---------RTLNEHVLSFNSGRPQI--ENKWTSLALMVYREAIVAG 454
           I+G CS  R+  A         R ++  V+++N+       E K+   A  +Y E +  G
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFE-AEELYDEMLPRG 355

Query: 455 TIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF--GEYDPRAF 512
            IP     S ++         D  E +   +     +       +LIDG+   +      
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 513 SLLEEAASFGIV 524
            LL E    G+V
Sbjct: 416 ELLHEMTETGLV 427


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 181/389 (46%), Gaps = 21/389 (5%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLS 93
           +G+I++ + L  +M  KG+      +      + ++   I++A + F  +      P   
Sbjct: 485 KGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAG-LIRDAVKLFNEMAEWNVKPNRV 543

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAM 146
           T+N+++       D   AF+ L+ + E G+  D   Y  LI     +G+       VD +
Sbjct: 544 TYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGL 603

Query: 147 FE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
            + N + + + +  L+    + G ++ A  V  EM      VD D +  G L+       
Sbjct: 604 HKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQ--RGVDLDLVCYGVLIDGSLKHK 661

Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
                  + K +H   +K    +YT  I+  S+TGD++ A  ++D M  +G +P+EV  +
Sbjct: 662 DRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYT 721

Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYSSLMGACSNAK-NWQKALELYEHM 322
           A+I+    AG V  A E+L  +K Q +S     ++Y   +   +  + + QKA+EL+  +
Sbjct: 722 AVINGLCKAGFVNEA-EVLC-SKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAI 779

Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
               L  T +T N LI   C   ++ +  E+++ M   G+ P+ ITY+ ++    R++DV
Sbjct: 780 LKGLLANT-ATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDV 838

Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           +  + L +   E G+ P+ V +  +I  C
Sbjct: 839 KKAIELWNSMTEKGIRPDRVAYNTLIHGC 867



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 181/425 (42%), Gaps = 50/425 (11%)

Query: 37  RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
           R+G++   +  L +M   GL      Y++     CK    I  A  F   + N    PT+
Sbjct: 414 RRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGD-ISAAEGFMAEMINKKLEPTV 472

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------DA 145
            T+  LM    S      A ++   +   G+      +TTL++   ++G +       + 
Sbjct: 473 VTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNE 532

Query: 146 MFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
           M E NVKP+RV +N +I    + G + +AF+ L EM  +   + PD  +   L+      
Sbjct: 533 MAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEK--GIVPDTYSYRPLIHGLCLT 590

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           GQ   A+     +HK N +     YT  ++   + G  E A SV  +M ++GV  D V  
Sbjct: 591 GQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCY 650

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
             LID +      +  F +L+E  ++G+    + Y+S++ A S   ++++A  +++ M +
Sbjct: 651 GVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMIN 710

Query: 325 IKLKPTVSTMNALITALC------DGDQLPKTMEVLS--------------------DMK 358
               P   T  A+I  LC      + + L   M+ +S                    DM+
Sbjct: 711 EGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQ 770

Query: 359 SL---------GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
                      GL  NT TY++L+    R+  +E    L+++   DGV P+ + +  +I 
Sbjct: 771 KAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMIN 830

Query: 410 MCSRR 414
              RR
Sbjct: 831 ELCRR 835



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 91/426 (21%), Positives = 176/426 (41%), Gaps = 50/426 (11%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
           L ++G+I E ++L++ +   G+     VY+A   ++CK +K   EA   F    K+   P
Sbjct: 342 LRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRK-FHEAELLFDRMGKIGLRP 400

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----- 145
              T+++L+ +       + A   L  + + GLK     Y +LI    K G + A     
Sbjct: 401 NDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFM 460

Query: 146 ---MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
              + + ++P  V + +L+      G +++A  +  EM  +   + P   T   L+    
Sbjct: 461 AEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGK--GIAPSIYTFTTLLSGLF 518

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-- 260
            AG +  A +++  + ++N+K     Y + I    + GD   A     +MT+KG++PD  
Sbjct: 519 RAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTY 578

Query: 261 ------------------EVFLSAL---------IDFAG------HAGKVEAAFEILQEA 287
                             +VF+  L         I + G        GK+E A  + QE 
Sbjct: 579 SYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEM 638

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
             +G+ + ++ Y  L+      K+ +    L + M    LKP      ++I A       
Sbjct: 639 VQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDF 698

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
            +   +   M + G  PN +TY+ ++    +   V    +L S+ +    +PN V + C 
Sbjct: 699 KEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCF 758

Query: 408 IGMCSR 413
           + + ++
Sbjct: 759 LDILTK 764



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 153/363 (42%), Gaps = 18/363 (4%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
           P +  +  ++      KD   A +++  ++  G   +   Y  LI    K  KV      
Sbjct: 225 PDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGI 284

Query: 144 --DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             D   +++KPD V +  L+    +    +   +++ EM        P    + +L++  
Sbjct: 285 KKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLC--LRFSPSEAAVSSLVEGL 342

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
              G+++ A  + K +  + +     VY   I+   +   +  A  ++D M K G+ P++
Sbjct: 343 RKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPND 402

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  S LID     GK++ A   L E  + G+ + +  Y+SL+       +   A      
Sbjct: 403 VTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAE 462

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           M + KL+PTV T  +L+   C   ++ K + +  +M   G+ P+  T++ LL    R   
Sbjct: 463 MINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGL 522

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-----SRRYEKARTLNEH--VLSFNSGRP 433
           +   + L ++  E  V PN V +  +I G C     S+ +E  + + E   V    S RP
Sbjct: 523 IRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRP 582

Query: 434 QIE 436
            I 
Sbjct: 583 LIH 585



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 81/356 (22%), Positives = 151/356 (42%), Gaps = 23/356 (6%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN +I     +G +S+  + L++M  KG++     Y      +C + +A  EA  F   
Sbjct: 544 TYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQA-SEAKVFVDG 602

Query: 87  VP--NPTLSTF---NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           +   N  L+      +L   C   K  E A  V + + + G+  D   Y  LI    K  
Sbjct: 603 LHKGNCELNEICYTGLLHGFCREGKLEE-ALSVCQEMVQRGVDLDLVCYGVLIDGSLKHK 661

Query: 142 KVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
                F          +KPD V++ ++I A  ++G    AF +   M  E     P+ +T
Sbjct: 662 DRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINE--GCVPNEVT 719

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDM 252
             A++     AG V+ A  +   +   +       Y   ++  ++   D + A  +++ +
Sbjct: 720 YTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAI 779

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
            K G++ +    + LI      G++E A E++      G+S   I+Y++++       + 
Sbjct: 780 LK-GLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDV 838

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
           +KA+EL+  M    ++P     N LI   C   ++ K  E+ ++M   GL PN  T
Sbjct: 839 KKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKT 894



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/226 (19%), Positives = 96/226 (42%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+  T+ AL+           A E++  +    I+    +YT  I    +  D   A  +
Sbjct: 190 PEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEM 249

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
              M   G   + V  + LID      KV  A  I ++   + +   +++Y +L+     
Sbjct: 250 IAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCK 309

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
            + ++  LE+ + M  ++  P+ + +++L+  L    ++ + + ++  +   G+ PN   
Sbjct: 310 VQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFV 369

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
           Y+ L+ +  +        +L  +  + G+ PN V +  +I M  RR
Sbjct: 370 YNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRR 415



 Score = 38.9 bits (89), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 17/99 (17%)

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS-ILLVACERKDDVE 383
           + L P V T++AL+  L         ME+ +DM S+G+ P+   Y+ ++   CE KD   
Sbjct: 186 VSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKD--- 242

Query: 384 VGLMLLSQAKE-------DGVIPNLVMFKCII-GMCSRR 414
                LS+AKE        G   N+V +  +I G+C ++
Sbjct: 243 -----LSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQ 276


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 178/400 (44%), Gaps = 21/400 (5%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
           +YN LI    + G +     + E M+ K +      +++    +CK +K +KEA    K 
Sbjct: 248 TYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRK-MKEARSLLKE 306

Query: 87  VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
           +      P   T+++L        D  GA ++     E G++ +    + L+    K GK
Sbjct: 307 MEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGK 366

Query: 143 VDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           V+   E +K         D V++N  +    + G +++A   +  M  E   + P+ IT 
Sbjct: 367 VEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERM--ESFGLRPNSITF 424

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            +L+    +  ++D+A E  K + +  +  + E Y   I+   +   ++    + + M +
Sbjct: 425 NSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEE 484

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQ 313
            GV P+ V   +LI+     GK+  A  +L++   +G+      Y+ L+ G+C   K  +
Sbjct: 485 IGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGK-VK 543

Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
            AL  ++ M   ++ PT+ T N LI  LC   +L +  + L+ + S G  P+ ITY+ L+
Sbjct: 544 DALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLI 603

Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
                  +V   L L    K  G+ P +  +  +I  CS+
Sbjct: 604 SGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSK 643



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 160/382 (41%), Gaps = 70/382 (18%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK---SQKAIK--EAFRFFKLV 87
           N L +QG++ +  ++L+     GL+  + +Y+      C+     KAI   E    F L 
Sbjct: 359 NGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLR 418

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           PN    TFN L+      K+ + A + ++ + E G                         
Sbjct: 419 PNSI--TFNSLIDKFCDMKEMDKAEEWVKKMAEKG------------------------- 451

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
             V P    +N LI   G+    DR F +L +M  E   V P+ ++ G+L+      G++
Sbjct: 452 --VTPSVETYNTLIDGYGKLCTFDRCFQILEQM--EEIGVKPNVVSYGSLINCLCKDGKI 507

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
             A  V + +    +    +VY + I+     G  + A   +D+M +  + P  V  + L
Sbjct: 508 LEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVL 567

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           ID     GK+  A + L +  + G S  +I+Y+SL+   +NA N  K L LYE MK++ +
Sbjct: 568 IDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGI 627

Query: 328 KPTVSTMNALITALC-DGDQLPK-------TMEVLSD----------------------- 356
           KPTV T + LI+    +G +L +        M +L D                       
Sbjct: 628 KPTVRTYHPLISGCSKEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSL 687

Query: 357 ---MKSLGLCPNTITYSILLVA 375
              M   G+ P+ +TY+ L++ 
Sbjct: 688 HQGMLDQGIHPDKMTYNSLILG 709



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 172/426 (40%), Gaps = 51/426 (11%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNPT 91
           + + +  + +DL  ++E  G    D   +A+        + +K    F     K    P 
Sbjct: 152 VNEKQFVKVVDLFMEIENSGF-RTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPN 210

Query: 92  LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
           +  +N+L+      K    A ++   +    L      Y TLI    K G++DA F+   
Sbjct: 211 VFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRE 270

Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI--------- 194
                +V P+ + FN+L++   +   +  A  +L EM  EV+   PD  T          
Sbjct: 271 RMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEM--EVNGFMPDGYTYSILFDGLLR 328

Query: 195 -----GA---------------------LMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
                GA                     L+      G+V++A E+ K   +  +     +
Sbjct: 329 CDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVI 388

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   +N   + GD   A    + M   G+ P+ +  ++LID      +++ A E +++  
Sbjct: 389 YNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMA 448

Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
            +G++  + +Y++L+        + +  ++ E M+ I +KP V +  +LI  LC   ++ 
Sbjct: 449 EKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKIL 508

Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +   VL DM   G+ PN   Y++L+        V+  L    +     + P LV +  +I
Sbjct: 509 EAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLI 568

Query: 409 -GMCSR 413
            G+C +
Sbjct: 569 DGLCKK 574



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 109/475 (22%), Positives = 194/475 (40%), Gaps = 34/475 (7%)

Query: 80  AFRFFKLVPNPTLS--TFNMLMSVCASSKDSEGAFQVLRL---VQEAGLKADCKLYTTLI 134
            F  F  +P P  S  T N L +   SSKD E   QV +L   +Q+   +A   L  +LI
Sbjct: 24  VFPSFSTIPTPEESEQTQNTLSN--NSSKDQERYEQVNKLQILLQQNCNEAAYSLAKSLI 81

Query: 135 TTCAKSGKVDAMFENVK----PDRVVF-NALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            T +       +F        P R+   + L++ C +S  +  A ++   M  +      
Sbjct: 82  LTKSTFSSPSDLFSCFSACSIPLRITLSDMLLSVCCKSKMLREAVELYEFMRRDGKLPS- 140

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
             +++  L     N  Q  +  +++  I     +    +Y  AI    +  + +      
Sbjct: 141 -LVSLSLLFSCLVNEKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFL 199

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           D M K+GV P+    + LI       ++  A ++  E  N  +   I++Y++L+      
Sbjct: 200 DSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKV 259

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
                A ++ E MK   + P + T N+L++ LC   ++ +   +L +M+  G  P+  TY
Sbjct: 260 GELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTY 319

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGV-IPNLVMFKCIIGMCSR-RYEKA----RTLNE 423
           SIL     R DD    + L  QA E G+ I N      + G+C + + EKA    +   E
Sbjct: 320 SILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKAEEILKKFTE 379

Query: 424 HVL--------SFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA 475
           + L        +F +G  +I +   ++  +   E+   G  P     + ++         
Sbjct: 380 NGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESF--GLRPNSITFNSLIDKFCDMKEM 437

Query: 476 DIRERLVENLGVSADALKRSNLCSLIDGFGE---YDPRAFSLLEEAASFGIVPCV 527
           D  E  V+ +             +LIDG+G+   +D R F +LE+    G+ P V
Sbjct: 438 DKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLCTFD-RCFQILEQMEEIGVKPNV 491



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 144/335 (42%), Gaps = 37/335 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
           N L + G+I E   +L DM  +G+L   +VY+      C   K +K+A RFF  +     
Sbjct: 499 NCLCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGK-VKDALRFFDEMMRSEI 557

Query: 89  NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
           +PTL T+N+L+  +C   K +E                  + + T IT+   S       
Sbjct: 558 SPTLVTYNVLIDGLCKKGKLTEA-----------------EDFLTQITSSGHS------- 593

Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
               PD + +N+LI+    +G V +   +   M      + P   T   L+  C+  G +
Sbjct: 594 ----PDVITYNSLISGYANAGNVSKCLGLYETMKN--LGIKPTVRTYHPLISGCSKEG-I 646

Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
           +   ++Y  + + N+     VY   I+C ++ G+ + A S++  M  +G+ PD++  ++L
Sbjct: 647 ELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSL 706

Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
           I      GK+    +++   K + ++    +Y  L+    + K++  A   Y  M     
Sbjct: 707 ILGHFREGKLSNIKDLVNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNF 766

Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
            P  S  N L   L    +L +   + S+M   G+
Sbjct: 767 LPNASICNELTAGLEQEGRLQEVQVICSEMNVKGI 801


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 160/384 (41%), Gaps = 15/384 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L   GR++E  DL+ +M   G+L            +C      ++A+R F  + N   
Sbjct: 293 NGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALC-DMGCYEDAWRLFVDMKNKGC 351

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            P + T+  L+S    S   + A  +   +   G+  +   Y  LI    ++ ++   F 
Sbjct: 352 EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      P+ V +N +I      G   +A  V+  M    H  +   +T   ++K 
Sbjct: 412 VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSAN--LVTYNTIIKG 469

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             ++G    A  +  ++     K     YT  I    +    E A  ++++M   G+ P+
Sbjct: 470 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPN 529

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           EV  +ALID      K++ A  +L+  K  G    + +Y+ L+   +   N+  A EL +
Sbjct: 530 EVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 589

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    + P V T  A+I  LC        +E+ + M   G  PN +TYS L+ A  ++ 
Sbjct: 590 VMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 649

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMF 404
            VE    L ++ +  G+IP+ + +
Sbjct: 650 KVEEAENLFAELERHGLIPDEITY 673



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 95/461 (20%), Positives = 198/461 (42%), Gaps = 31/461 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAFRFFKLVP 88
           L R G  +  +D    M  +G+     +Y+A    +CK      ++  +K+ F   ++ P
Sbjct: 190 LSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFES-EMSP 248

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           + T +  +M++  C    D + A QV   + + G + +   Y+TLI     SG+V+  F+
Sbjct: 249 D-TFTYTSMILGHC-RKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFD 306

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            ++        P        I A    G  + A+ +  +M  +    +P+  T  AL+  
Sbjct: 307 LIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNK--GCEPNVYTYTALISG 364

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              +G +  A  ++  + +  +      Y   IN   +    ++A  V + M + G  P+
Sbjct: 365 LCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPN 424

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + +I      G  + A  ++     +G S  +++Y++++    ++ N   AL + +
Sbjct: 425 IVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILD 484

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+    KP   +   LI   C   ++     + ++M   GLCPN +TY+ L+    + +
Sbjct: 485 LMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE 544

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNE---------HVLSFN 429
            ++    LL   K  G  PN+  +  +I   +++  +  A  L +         +V+++ 
Sbjct: 545 KLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYT 604

Query: 430 SGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
           +    + +N  TSLAL ++ + I  G +P +   S ++  L
Sbjct: 605 AMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 140/323 (43%), Gaps = 11/323 (3%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--------EN 149
           L+  C S +        L ++ ++GL+     Y+ L+   ++ G   A+         E 
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V+P+ +++NA+I A  + G V  A  ++ ++      + PD  T  +++        +D 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFES--EMSPDTFTYTSMILGHCRKHDLDS 268

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A +V+  + K   +     Y+  IN    +G    A  +  +M   G++P     +  I 
Sbjct: 269 ALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPII 328

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G  E A+ +  + KN+G    + +Y++L+     +   + A+ L+  M    + P
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFP 388

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
              T NALI  L +  ++     VL+ M   G  PN +TY+ ++       D +  ++++
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVM 448

Query: 390 SQAKEDGVIPNLVMFKCII-GMC 411
           +   + G   NLV +  II G C
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYC 471



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 147/362 (40%), Gaps = 19/362 (5%)

Query: 28  QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +++Y  LI      G +   I L   M R G+      Y+A   N+    + IK AF  
Sbjct: 354 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA-LINILVENRRIKYAFVV 412

Query: 84  FKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             L+     +P + T+N ++       D + A  V+  + + G  A+   Y T+I     
Sbjct: 413 LNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 472

Query: 140 SGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           SG   +             KPD   +  LI    +   ++ AF +  EM  +   + P+ 
Sbjct: 473 SGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDD--GLCPNE 530

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T  AL+       ++D A  + + + +   +   + Y + I+  ++  ++  A  +   
Sbjct: 531 VTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKV 590

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M ++G+ P+ V  +A+ID     G    A E+  +   QG    +++YSSL+ A      
Sbjct: 591 MIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGK 650

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            ++A  L+  ++   L P   T   +I A     ++      L  M   G  P   TY +
Sbjct: 651 VEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGV 710

Query: 372 LL 373
           L+
Sbjct: 711 LI 712



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 77/376 (20%), Positives = 137/376 (36%), Gaps = 39/376 (10%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTF 95
           ++     LLE M+R G     + Y+     + K Q     A    K++      P + T+
Sbjct: 545 KLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTK-QNNFSGAEELCKVMIEEGIFPNVVTY 603

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFENVK- 151
             ++     +  +  A ++   + E G   +   Y++LI    + GKV+    +F  ++ 
Sbjct: 604 TAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELER 663

Query: 152 ----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA------- 200
               PD + +  +I A   SG V+ AF+ L  M        P   T G L+K        
Sbjct: 664 HGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKA--GCQPTLWTYGVLIKGLKNEYLL 721

Query: 201 --------------CANAGQVDRAREVYKM---IHKYNIKGTPEVYTIAINCCSQTGDWE 243
                         C+   Q      V  M   + + +   + +V    ++  S  G W 
Sbjct: 722 ADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWF 781

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  +   M  +G+ PD+   ++L+        V+ A  + +    QG  V +  Y  L+
Sbjct: 782 EANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 841

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
            A       ++A   +E+M      P       LI  L         ME L  M++    
Sbjct: 842 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYM 901

Query: 364 PNTITYSILLVACERK 379
           P+   Y+IL     +K
Sbjct: 902 PSFHIYTILAREASKK 917


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 181/407 (44%), Gaps = 30/407 (7%)

Query: 18  HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
           H+N  +DV + +  +NRL+RQ       +  + +   G L   K YH     +  SQK  
Sbjct: 62  HSN--NDVDDAVSLFNRLLRQNPTPPAFEFNKIL---GSLVKSKHYHTV---LSLSQKM- 112

Query: 78  KEAFRFFKLVPNPTLSTFNMLMSVCASSK----DSEGAFQVLRLVQEAGLKADCKLYTTL 133
              FR  K    P L   N+L+               AF     +   G   D   Y TL
Sbjct: 113 --EFRGIK----PNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTL 166

Query: 134 ITTCAKSGKVDAMFEN--------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
           I    K G+  A  +         V+ + V++N +I    +   V+ AFD+ +EM ++  
Sbjct: 167 IHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSK-- 224

Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
            + P+ +T  AL+      G++  A +++  I   NIK     + I ++   +    +  
Sbjct: 225 GISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEG 284

Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
            +V+  M K+G+IPD V  ++L+D      +V  A  I       G++  I SY+ L+  
Sbjct: 285 KTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILING 344

Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
               K   KA+ L+  M    + P V T N+LI  L    ++   ++++  M   G+ PN
Sbjct: 345 FCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPN 404

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            +TY+ ++ A  +   V+  + L+++ K+ G+ P++  +  +I G+C
Sbjct: 405 ILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLC 451



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 181/415 (43%), Gaps = 48/415 (11%)

Query: 31  SYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFF- 84
           SY  LI    + G     +DLL+ ++ K L+ ++ V Y+   + +CK  K + +AF  + 
Sbjct: 162 SYGTLIHGLCKVGETRAALDLLQRVDGK-LVQLNAVMYNTVIYGMCK-DKHVNDAFDLYS 219

Query: 85  KLVP---NPTLSTFNMLMS---VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
           ++V    +P + T++ L+S   V    KD+   F  + L     +K D   +  L+    
Sbjct: 220 EMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIIL---ENIKPDGYTFNILVDGFC 276

Query: 139 KSGKVD--------AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
           K  K+          M + + PD V +N+L+        V+ A  +   M      V+PD
Sbjct: 277 KDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQG--GVNPD 334

Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
             +   L+       +VD+A  ++  +H  NI      Y   I+  S++G   +A  + D
Sbjct: 335 IRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVD 394

Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNA 309
            M  +GV P+ +  +++ID      +V+ A  ++ + K+QGI   + +Y+ L+ G C   
Sbjct: 395 QMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCK-- 452

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
                 +E Y+         TV+T N +I   C      + + +LS MK     PN +TY
Sbjct: 453 ------VEGYD--------ITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTY 498

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 424
            I + +    ++ +    L  +    G++     + C     S +  ++ T+ +H
Sbjct: 499 EITIRSLLDNNENDKAEKLFREMITRGLLNRSASYPC----SSMKIHQSLTMVQH 549


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 160/384 (41%), Gaps = 15/384 (3%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
           N L   GR++E  DL+ +M   G+L            +C      ++A+R F  + N   
Sbjct: 293 NGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALC-DMGCYEDAWRLFVDMKNKGC 351

Query: 90  -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            P + T+  L+S    S   + A  +   +   G+  +   Y  LI    ++ ++   F 
Sbjct: 352 EPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFV 411

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                      P+ V +N +I      G   +A  V+  M    H  +   +T   ++K 
Sbjct: 412 VLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANL--VTYNTIIKG 469

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
             ++G    A  +  ++     K     YT  I    +    E A  ++++M   G+ P+
Sbjct: 470 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPN 529

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
           EV  +ALID      K++ A  +L+  K  G    + +Y+ L+   +   N+  A EL +
Sbjct: 530 EVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 589

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M    + P V T  A+I  LC        +E+ + M   G  PN +TYS L+ A  ++ 
Sbjct: 590 VMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 649

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMF 404
            VE    L ++ +  G+IP+ + +
Sbjct: 650 KVEEAENLFAELERHGLIPDEITY 673



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 95/461 (20%), Positives = 198/461 (42%), Gaps = 31/461 (6%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK------SQKAIKEAFRFFKLVP 88
           L R G  +  +D    M  +G+     +Y+A    +CK      ++  +K+ F   ++ P
Sbjct: 190 LSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFES-EMSP 248

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
           + T +  +M++  C    D + A QV   + + G + +   Y+TLI     SG+V+  F+
Sbjct: 249 D-TFTYTSMILGHC-RKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFD 306

Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
            ++        P        I A    G  + A+ +  +M  +    +P+  T  AL+  
Sbjct: 307 LIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNK--GCEPNVYTYTALISG 364

Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
              +G +  A  ++  + +  +      Y   IN   +    ++A  V + M + G  P+
Sbjct: 365 LCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPN 424

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            V  + +I      G  + A  ++     +G S  +++Y++++    ++ N   AL + +
Sbjct: 425 IVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILD 484

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+    KP   +   LI   C   ++     + ++M   GLCPN +TY+ L+    + +
Sbjct: 485 LMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDE 544

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNE---------HVLSFN 429
            ++    LL   K  G  PN+  +  +I   +++  +  A  L +         +V+++ 
Sbjct: 545 KLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYT 604

Query: 430 SGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
           +    + +N  TSLAL ++ + I  G +P +   S ++  L
Sbjct: 605 AMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRAL 645



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 140/323 (43%), Gaps = 11/323 (3%)

Query: 98  LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF--------EN 149
           L+  C S +        L ++ ++GL+     Y+ L+   ++ G   A+         E 
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG 210

Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
           V+P+ +++NA+I A  + G V  A  ++ ++      + PD  T  +++        +D 
Sbjct: 211 VQPNLLIYNAVINALCKDGNVADAETIMKKVFES--EMSPDTFTYTSMILGHCRKHDLDS 268

Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
           A +V+  + K   +     Y+  IN    +G    A  +  +M   G++P     +  I 
Sbjct: 269 ALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPII 328

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G  E A+ +  + KN+G    + +Y++L+     +   + A+ L+  M    + P
Sbjct: 329 ALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFP 388

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
              T NALI  L +  ++     VL+ M   G  PN +TY+ ++       D +  ++++
Sbjct: 389 NTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVM 448

Query: 390 SQAKEDGVIPNLVMFKCII-GMC 411
           +   + G   NLV +  II G C
Sbjct: 449 NNMLQRGHSANLVTYNTIIKGYC 471



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 147/362 (40%), Gaps = 19/362 (5%)

Query: 28  QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            +++Y  LI      G +   I L   M R G+      Y+A   N+    + IK AF  
Sbjct: 354 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA-LINILVENRRIKYAFVV 412

Query: 84  FKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
             L+     +P + T+N ++       D + A  V+  + + G  A+   Y T+I     
Sbjct: 413 LNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCD 472

Query: 140 SGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
           SG   +             KPD   +  LI    +   ++ AF +  EM  +   + P+ 
Sbjct: 473 SGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDD--GLCPNE 530

Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
           +T  AL+       ++D A  + + + +   +   + Y + I+  ++  ++  A  +   
Sbjct: 531 VTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKV 590

Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
           M ++G+ P+ V  +A+ID     G    A E+  +   QG    +++YSSL+ A      
Sbjct: 591 MIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGK 650

Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
            ++A  L+  ++   L P   T   +I A     ++      L  M   G  P   TY +
Sbjct: 651 VEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGV 710

Query: 372 LL 373
           L+
Sbjct: 711 LI 712



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 135/369 (36%), Gaps = 39/369 (10%)

Query: 40  RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTF 95
           ++     LLE M+R G     + Y+     + K Q     A    K++      P + T+
Sbjct: 545 KLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTK-QNNFSGAEELCKVMIEEGIFPNVVTY 603

Query: 96  NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFENVK- 151
             ++     +  +  A ++   + E G   +   Y++LI    + GKV+    +F  ++ 
Sbjct: 604 TAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELER 663

Query: 152 ----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA------- 200
               PD + +  +I A   SG V+ AF+ L  M        P   T G L+K        
Sbjct: 664 HGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKA--GCQPTLWTYGVLIKGLKNEYLL 721

Query: 201 --------------CANAGQVDRAREVYKM---IHKYNIKGTPEVYTIAINCCSQTGDWE 243
                         C+   Q      V  M   + + +   + +V    ++  S  G W 
Sbjct: 722 ADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWF 781

Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
            A  +   M  +G+ PD+   ++L+        V+ A  + +    QG  V +  Y  L+
Sbjct: 782 EANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELI 841

Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
            A       ++A   +E+M      P       LI  L         ME L  M++    
Sbjct: 842 CALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYM 901

Query: 364 PNTITYSIL 372
           P+   Y+IL
Sbjct: 902 PSFHIYTIL 910



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 116/297 (39%), Gaps = 20/297 (6%)

Query: 28  QLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
            L +Y+ LIR    +G++ E  +L  ++ER GL+  D++ + +          ++ AF F
Sbjct: 634 NLLTYSSLIRALGQEGKVEEAENLFAELERHGLIP-DEITYVKMIEAYIMSGKVEHAFNF 692

Query: 84  F----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTLITTCA 138
                K    PTL T+ +L+        +E      RL     +  +C   Y T  T   
Sbjct: 693 LGRMIKAGCQPTLWTYGVLIK----GLKNEYLLADQRLAALPDVVPNCSFGYQT--TDQD 746

Query: 139 KSGKVDAMFENVKPDRVVF--NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
               + A    + P   V   NAL++    +G    A ++L  M ++   + PD     +
Sbjct: 747 AVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQ--GLCPDQEAYNS 804

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+ +      VD A  V+K +     +     Y   I    Q    + A   +++M  + 
Sbjct: 805 LLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRT 864

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
             PD+V  + LID     G  +   E L   + +        Y+ L    S  ++W+
Sbjct: 865 WNPDDVVQAVLIDGLLRDGYKDLCMEFLHIMETRRYMPSFHIYTILAREASKKRSWK 921


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 152/351 (43%), Gaps = 31/351 (8%)

Query: 87  VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
           VPN  +S   ++ S+C  S+  E    V R+ +E G                        
Sbjct: 224 VPN-AISYNTVIKSLCGDSRSQEALDMVQRMAKEGG------------------------ 258

Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
                PD V FN +I    + G V +A +++ EM  +   V+PD +T  +++ A   A  
Sbjct: 259 --RCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQK--GVEPDVVTYNSIVDALCKARA 314

Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
           +D+A  V + +    ++     YT  I+  S +G W+ +  ++  MT KG+IP  V  ++
Sbjct: 315 MDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNS 374

Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
            +      G+ + A EI Q    +G    ++SYS L+   +    +     L+  M    
Sbjct: 375 FMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKG 434

Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
           +       N LI+A      + + M V ++M+  G+ P+ +TYS L+ A  R   +   +
Sbjct: 435 IVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAM 494

Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQI 435
              SQ    G+ PN V++  +I G C      KA+ L   ++S    RP I
Sbjct: 495 EKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNI 545



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 124/555 (22%), Positives = 219/555 (39%), Gaps = 84/555 (15%)

Query: 31  SYNRLIRQ----GRISECIDLLEDMERKG------LLDMDKVYHARFFNVCKSQKAIKEA 80
           SYN +I+      R  E +D+++ M ++G      ++  + V H  FF   +  KA    
Sbjct: 229 SYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHG-FFKQGEVSKACNLI 287

Query: 81  FRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT--TCA 138
               +    P + T+N ++     ++  + A  VLR + + G++ D   YT +I   +C+
Sbjct: 288 NEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCS 347

Query: 139 KSGKVDA-MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
              K  A MF  +      P  V FN+ +++  + G    A ++   M  + H   PD +
Sbjct: 348 GHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHM--PDLV 405

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           +   L+   A  G+      ++  +    I      + I I+  ++ G  + A  V+ +M
Sbjct: 406 SYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEM 465

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
             +GV PD V  S LI      G++  A E   +  + G+    + Y SL+       + 
Sbjct: 466 QGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDL 525

Query: 313 QKALELYEHMKS------------------------------------IKLKPTVSTMNA 336
            KA EL   M S                                    I  +PT+ T N+
Sbjct: 526 VKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNS 585

Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
           LI   C   ++ K   VL  M S+G+ P+ +TY+ L+    +   ++ GL+L  +     
Sbjct: 586 LIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKK 645

Query: 397 VIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGT 455
           V P  V +  ++ G+                 F++GR       TS A  ++ E I +GT
Sbjct: 646 VKPTTVTYSIVLDGL-----------------FHAGR-------TSAAKKMFHEMIDSGT 681

Query: 456 IPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR--AFS 513
              ++    +L  L      D    L   LG        + L ++I+   +   R  A  
Sbjct: 682 AVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEAND 741

Query: 514 LLEEAASFGIVPCVS 528
           L    ++ G+VP VS
Sbjct: 742 LFAAISTSGLVPNVS 756



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 92/424 (21%), Positives = 184/424 (43%), Gaps = 51/424 (12%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL-- 92
           L + GR  +  ++ + M  KG +  D V ++   +   ++    +    F  + +  +  
Sbjct: 379 LCKHGRSKDAEEIFQYMTTKGHMP-DLVSYSILLHGYATEGRFADMNNLFHSMADKGIVA 437

Query: 93  --STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMFE- 148
               FN+L+S  A     + A  V   +Q  G++ D   Y+TLI+   + G++ DAM + 
Sbjct: 438 NCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKF 497

Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                  ++P+ VV+++LI      G + +A ++++EM ++  P  P+ +   +++ +  
Sbjct: 498 SQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIP-RPNIVFFSSIIHSLC 556

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
           N G+V  A +V+ ++     + T   +   I+     G  E A  V D M   G+ PD V
Sbjct: 557 NEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVV 616

Query: 263 FLSALI-----------------------------------DFAGHAGKVEAAFEILQEA 287
             + L+                                   D   HAG+  AA ++  E 
Sbjct: 617 TYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEM 676

Query: 288 KNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346
            + G +V I +Y  L+ G C N     +A+ L+  + ++  K  ++ +N +I AL    +
Sbjct: 677 IDSGTAVDIDTYKILLKGLCRNDLT-DEAITLFHKLGAMDCKFDITILNTVINALYKVRR 735

Query: 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC 406
             +  ++ + + + GL PN  TY +++    ++  VE    + S  ++ G  P+  +   
Sbjct: 736 REEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLND 795

Query: 407 IIGM 410
           II M
Sbjct: 796 IIRM 799


>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
 gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
          Length = 647

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 172/399 (43%), Gaps = 38/399 (9%)

Query: 25  VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + +YN L+R      R+     +L++M RKG    D  Y      +CK  + + EA
Sbjct: 159 VHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDR-LDEA 217

Query: 81  FRFFKLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
                 +P P  +++N +++++C   +  E  F V+  +   GL+ +   YTT++    K
Sbjct: 218 TEVLAAMP-PVAASYNAIVLALCREFRMQE-VFSVVSDMVGRGLQPNVITYTTIVDAFCK 275

Query: 140 SGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
           +G+                 L  AC           +LA M   +    P+ +T  AL++
Sbjct: 276 AGE-----------------LRMACA----------ILARM--VITGCTPNVVTFTALVR 306

Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
              + G+V  A ++++ +       +   Y I I      GD + A S+ + M + G  P
Sbjct: 307 GLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFP 366

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           +    S LID    AG +  A  I  +    G    ++ Y++++        + +A  L 
Sbjct: 367 NVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLI 426

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
           + M      P   T N LI +LCD  ++ + + V  +M+  G  PN  TY+ L+    R+
Sbjct: 427 DKMLLENCPPNTVTFNTLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFRE 486

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEK 417
            +    L ++++ +  G+  +LV +  ++ G+C  R  +
Sbjct: 487 GNCGDALHMVTEMQSHGIELSLVTYNTVVSGLCQTRMSR 525


>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
 gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
          Length = 571

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 138/307 (44%), Gaps = 15/307 (4%)

Query: 89  NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
            PT   + ML+++     D  GA  +   ++    + D   YT LI    K+G++D  + 
Sbjct: 262 QPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYH 321

Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
                  E  +PD +V N +I   G++G +D A  +  EM        P  +T   ++KA
Sbjct: 322 FFYEMQREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGT--LRCIPSVVTYNTIIKA 379

Query: 201 CANAGQVDRAREV---YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
              +    RA EV   ++ + +  I  +   Y+I I+   +T   E A  + ++M +KG 
Sbjct: 380 LFESK--SRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGF 437

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P      +LID  G A + + A E+ QE K    S     Y+ ++     A     A+ 
Sbjct: 438 PPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAIN 497

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           +++ M  +   P V   NAL++ L     L + +  +  M+  G  P+  +Y+I+L   +
Sbjct: 498 MFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQ 557

Query: 378 RKDDVEV 384
           +++D+ V
Sbjct: 558 KQEDLIV 564



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 128/268 (47%), Gaps = 13/268 (4%)

Query: 141 GKVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
            K  A+F  +K     P    +N++I      G  ++  ++  EM+ E H   PD +T  
Sbjct: 176 SKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCF-PDTMTYS 234

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
           AL+ A    G+ D A ++   +    ++ T ++YT+ +    +  D   A S++++M  +
Sbjct: 235 ALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEMRHQ 294

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
              PD    + LI   G AG+++ A+    E + +G     I  ++++     A     A
Sbjct: 295 YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGKAGRLDDA 354

Query: 316 LELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSI 371
           ++L++ M +++  P+V T N +I AL +      ++P   E    MK  G+ P++ TYSI
Sbjct: 355 MKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFE---RMKESGISPSSFTYSI 411

Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIP 399
           L+    + + +E  +MLL +  E G  P
Sbjct: 412 LIDGFCKTNRMEKAMMLLEEMDEKGFPP 439



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 91/460 (19%), Positives = 171/460 (37%), Gaps = 58/460 (12%)

Query: 3   DGGKNM-LQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK 61
           D G N+ +QF     K  NY HD S  +   + L    +  E   ++++M R  +  +  
Sbjct: 100 DIGVNVKMQFFRWAAKRRNYEHDTSTYMALIHCLEVVEQYGEMWKMIQEMVRNPICVVTP 159

Query: 62  VYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVL-R 116
              +    +  + K + +A   F  +      PT   +N ++ +       E   ++   
Sbjct: 160 TELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMIIMLMHEGQYEKVHELYNE 219

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG 168
           +  E     D   Y+ LI+   K G+ D+  +         ++P   ++  L+    +  
Sbjct: 220 MSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLN 279

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            V  A  +  EM  +     PD  T   L++    AG++D A   +  + +   +    V
Sbjct: 280 DVHGALSLFEEMRHQY--CRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIV 337

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV----FLSALIDFAGHAGKVEAAFEIL 284
               IN   + G  + A  ++ +M     IP  V     + AL +    A +V + FE +
Sbjct: 338 MNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERM 397

Query: 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL--- 341
           +E+   GIS    +YS L+         +KA+ L E M      P  +   +LI AL   
Sbjct: 398 KES---GISPSSFTYSILIDGFCKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKA 454

Query: 342 ------CD--------------------------GDQLPKTMEVLSDMKSLGLCPNTITY 369
                 C+                            +L   + +  +M  LG  P+   Y
Sbjct: 455 KRYDLACELFQELKENCGSSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAY 514

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
           + L+    R   ++  L  + + +E G IP++  +  I+ 
Sbjct: 515 NALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILN 554



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 70/132 (53%), Gaps = 2/132 (1%)

Query: 281 FEILQE-AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           ++++QE  +N    V     S ++    NAK   KA+ ++  +K+ K +PT    N++I 
Sbjct: 143 WKMIQEMVRNPICVVTPTELSEVVRMLGNAKMVSKAIAIFYQIKTRKCQPTAQAYNSMII 202

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
            L    Q  K  E+ ++M + G C P+T+TYS L+ A  +    +  + LL++ K++G+ 
Sbjct: 203 MLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQ 262

Query: 399 PNLVMFKCIIGM 410
           P   ++  ++ +
Sbjct: 263 PTTKIYTMLVAL 274


>gi|302819015|ref|XP_002991179.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
 gi|300141007|gb|EFJ07723.1| hypothetical protein SELMODRAFT_448320 [Selaginella moellendorffii]
          Length = 561

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 149/342 (43%), Gaps = 30/342 (8%)

Query: 82  RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
           R     P+PT  T+  +M                +   EAG   D +    L+T      
Sbjct: 214 RLLTTGPSPTAQTYQTMM----------------KSYSEAGRLDDVQRIFKLVT------ 251

Query: 142 KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
             D+    VKPD  ++N +I   G+ G V++A  V   M  E   V    +T  +L+ AC
Sbjct: 252 --DSPSPTVKPDARMYNLMIHTYGKQGKVEQAMSVYQSMKRER--VALTIVTFNSLL-AC 306

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
               +   A +V++ +    +      YT  +N  ++    E A + +DDM   G+ P +
Sbjct: 307 QKTWK--DAEDVFRKLQAAKLDPDVFSYTALVNAYAKARRAECAHAAFDDMIAAGIRPTQ 364

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
           V  +ALI+        E A  +L++ K  G +  + SY+SL+ A  +     KA +    
Sbjct: 365 VAYNALINAYAKCKDPEGARAVLKQMKQNGCTPTVESYTSLISAYVSVNLMAKAEQTVLR 424

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           MK   L+P + T   L+T   +G++L   M     MK  GL PN   Y++L+ A    DD
Sbjct: 425 MKEADLQPNLQTFCILMTGYANGNKLDNMMRSFETMKLAGLEPNRHVYTVLVNAYGSNDD 484

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNE 423
            +  ++   Q    G  P+ ++ + ++   ++ +E+   ++E
Sbjct: 485 FDSAIIWYKQMLGTGCKPDPIL-RTVLLKIAKSHEQTEEIHE 525



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 106/251 (42%), Gaps = 42/251 (16%)

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           L+  C + GQVD+   +++ + +  +    E+YT+ I    +   ++ A +V+  +   G
Sbjct: 161 LLAYCKD-GQVDKTEGIFQRMAELGVAANIEMYTLQIEGYGRRRSFDKAEAVFQRLLTTG 219

Query: 257 --------------------------------------VIPDEVFLSALIDFAGHAGKVE 278
                                                 V PD    + +I   G  GKVE
Sbjct: 220 PSPTAQTYQTMMKSYSEAGRLDDVQRIFKLVTDSPSPTVKPDARMYNLMIHTYGKQGKVE 279

Query: 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338
            A  + Q  K + +++ I++++SL+ AC   K W+ A +++  +++ KL P V +  AL+
Sbjct: 280 QAMSVYQSMKRERVALTIVTFNSLL-ACQ--KTWKDAEDVFRKLQAAKLDPDVFSYTALV 336

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
            A     +         DM + G+ P  + Y+ L+ A  +  D E    +L Q K++G  
Sbjct: 337 NAYAKARRAECAHAAFDDMIAAGIRPTQVAYNALINAYAKCKDPEGARAVLKQMKQNGCT 396

Query: 399 PNLVMFKCIIG 409
           P +  +  +I 
Sbjct: 397 PTVESYTSLIS 407


>gi|7413558|emb|CAB86037.1| putative protein [Arabidopsis thaliana]
          Length = 798

 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 114/471 (24%), Positives = 185/471 (39%), Gaps = 101/471 (21%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMD-------KVYHARF---FNVCKSQKAIK--EAFRF 83
           +RQG+I   +  L+ +E+ G+  +D       K+   +F    N  + +KAI   E    
Sbjct: 135 LRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVEKAIDLMEILAG 194

Query: 84  FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD----------CK----- 128
                   +  F+++ S C    + + A   +R++   G K D          CK     
Sbjct: 195 LGFKIKELVDPFDVVKS-CVEISNPQLA---IRIIHGFGKKGDMVSVMTAYEACKQILDT 250

Query: 129 --LYT--TLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDV 176
             +Y   T+I  C   G          D + EN+KP+  V N+L+         D  + +
Sbjct: 251 PNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIYVINSLMNVNSH----DLGYTL 306

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV----YTIA 232
               N ++  V  D  +   L+K C  AG+VD A+++YK   +    G  ++    Y   
Sbjct: 307 KVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLDAFTYCTI 366

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           I   +    W++A  V DDM   GV P+    S+LI    +AG VE A  + +E    G 
Sbjct: 367 IKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGC 426

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL------------------------- 327
                 ++ L+ AC  A  + +A  L++  K   +                         
Sbjct: 427 EPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPNILKNNG 486

Query: 328 ----------------------KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
                                 KPT +T N L+ A   G    +  E++ +MKSLGL PN
Sbjct: 487 PGSLVNRNSNSPYIQASKRFCFKPTTATYNILLKAC--GTDYYRGKELMDEMKSLGLSPN 544

Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
            IT+S L+  C    DVE  + +L      G  P++V +   I    RRY+
Sbjct: 545 QITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKEM-RRYQ 594



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 144/343 (41%), Gaps = 17/343 (4%)

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           P+      ++  C   G   ++R +Y+ + K NIK  P +Y I       + D  +   V
Sbjct: 251 PNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIK--PNIYVINSLMNVNSHDLGYTLKV 308

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS----VGIISYSSLMG 304
           Y +M    V  D    + L+     AG+V+ A +I +EAK    S    +   +Y +++ 
Sbjct: 309 YKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLDAFTYCTIIK 368

Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
             ++AK W+ AL++ + MKS+ + P   T ++LI+A  +   + +   +  +M + G  P
Sbjct: 369 VFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEP 428

Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 424
           N+  ++ILL AC      +    L    K   V  +L     +         K RT + +
Sbjct: 429 NSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIV--------SKGRTSSPN 480

Query: 425 VLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN 484
           +L  N     +     S  +   +      T  T  ++ K  G         + E  +++
Sbjct: 481 ILKNNGPGSLVNRNSNSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDE--MKS 538

Query: 485 LGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 527
           LG+S + +  S L  +  G G+ +  A  +L    S G  P V
Sbjct: 539 LGLSPNQITWSTLIDMCGGSGDVEG-AVRILRTMHSAGTRPDV 580



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/310 (22%), Positives = 135/310 (43%), Gaps = 72/310 (23%)

Query: 24  DVSEQLHSYNRLIRQGRISECIDLLED-------MERKGLLDMDKVYHARFFNVCKSQKA 76
           DV+  + SYN L++   ++  +DL +D       ME  GLL +D                
Sbjct: 316 DVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLD---------------- 359

Query: 77  IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
              AF            T+  ++ V A +K  + A +V   ++  G+  +   +++LI+ 
Sbjct: 360 ---AF------------TYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISA 404

Query: 137 CAKSGKVDA---MFENV-----KPDRVVFNALITACGQSGAVDRAFDVL-----AEMNAE 183
           CA +G V+    +FE +     +P+   FN L+ AC ++   DRAF +      + +N  
Sbjct: 405 CANAGLVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNES 464

Query: 184 VHPVD---------PDHIT---IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
           ++  D         P+ +     G+L+   +N+  +  ++       ++  K T   Y I
Sbjct: 465 LYADDIVSKGRTSSPNILKNNGPGSLVNRNSNSPYIQASK-------RFCFKPTTATYNI 517

Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
            +  C    D+     + D+M   G+ P+++  S LID  G +G VE A  IL+   + G
Sbjct: 518 LLKACGT--DYYRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAG 575

Query: 292 ISVGIISYSS 301
               +++Y++
Sbjct: 576 TRPDVVAYTT 585


>gi|302765062|ref|XP_002965952.1| hypothetical protein SELMODRAFT_84012 [Selaginella moellendorffii]
 gi|300166766|gb|EFJ33372.1| hypothetical protein SELMODRAFT_84012 [Selaginella moellendorffii]
          Length = 533

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 150/367 (40%), Gaps = 57/367 (15%)

Query: 34  RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS 93
           RL+++ R+ ECI  LE + + G +  + V        C        A R+  L+P+  L 
Sbjct: 120 RLLQENRVEECIRCLERLAKCGFVVKNLVKPTLCMEACARMHNTALALRYACLLPD-ILQ 178

Query: 94  TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAMFENV 150
           + NM+M       D +  FQV + ++  G++ D   Y  LI  C + G   K  A+FE +
Sbjct: 179 SCNMIMQKFRDQGDLQSVFQVFQALESTGVRPDMYSYCILIDACGRCGDAEKATAIFEGL 238

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
                V N  +                + MNA                    +AG +   
Sbjct: 239 LKAGTVLNVYVCN--------------SMMNA--------------------HAGNIQHV 264

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID- 269
             +Y+ +    I      Y I    C  + +   A  +Y+++  K +  + +    LI  
Sbjct: 265 LRLYRQMQGSGIAADVTTYNIVFKACRLSKNPVLALRLYEELKAKEIKMNVLSYGTLIQV 324

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
             G A  ++  F++  +  + GI   +++++SL+GACS     +K L++Y+ M      P
Sbjct: 325 IFGEAKMLDRVFQMKHDMDSTGIVPNVVTWTSLVGACSKGALVEKTLQVYQDMVQAGCTP 384

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLG------------------LCPNTITYSI 371
              T N L++A  DG Q  K  ++  + K+ G                  + P+++ Y+ 
Sbjct: 385 NAFTYNFLLSACVDGGQSDKAHKLFREWKTSGRILAGIEVQDESAIFSEWVRPDSVAYNT 444

Query: 372 LLVACER 378
           ++ AC++
Sbjct: 445 MMRACDK 451



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 112/225 (49%), Gaps = 4/225 (1%)

Query: 189 PDHI-TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
           PD + +   +M+   + G +    +V++ +    ++     Y I I+ C + GD E A +
Sbjct: 174 PDILQSCNMIMQKFRDQGDLQSVFQVFQALESTGVRPDMYSYCILIDACGRCGDAEKATA 233

Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           +++ + K G + +    +++++   HAG ++    + ++ +  GI+  + +Y+ +  AC 
Sbjct: 234 IFEGLLKAGTVLNVYVCNSMMN--AHAGNIQHVLRLYRQMQGSGIAADVTTYNIVFKACR 291

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALC-DGDQLPKTMEVLSDMKSLGLCPNT 366
            +KN   AL LYE +K+ ++K  V +   LI  +  +   L +  ++  DM S G+ PN 
Sbjct: 292 LSKNPVLALRLYEELKAKEIKMNVLSYGTLIQVIFGEAKMLDRVFQMKHDMDSTGIVPNV 351

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411
           +T++ L+ AC +   VE  L +     + G  PN   +  ++  C
Sbjct: 352 VTWTSLVGACSKGALVEKTLQVYQDMVQAGCTPNAFTYNFLLSAC 396



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 120/281 (42%), Gaps = 33/281 (11%)

Query: 54  KGLLDMDKVYHARFFNVCKSQKA--IKEAFRFFKLVPNPTL----STFNMLMSVCASSKD 107
           +GLL    V +    N   +  A  I+   R ++ +    +    +T+N++   C  SK+
Sbjct: 236 EGLLKAGTVLNVYVCNSMMNAHAGNIQHVLRLYRQMQGSGIAADVTTYNIVFKACRLSKN 295

Query: 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-VDAMFE--------NVKPDRVVFN 158
              A ++   ++   +K +   Y TLI       K +D +F+         + P+ V + 
Sbjct: 296 PVLALRLYEELKAKEIKMNVLSYGTLIQVIFGEAKMLDRVFQMKHDMDSTGIVPNVVTWT 355

Query: 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK--- 215
           +L+ AC +   V++   V  +M        P+  T   L+ AC + GQ D+A ++++   
Sbjct: 356 SLVGACSKGALVEKTLQVYQDMVQA--GCTPNAFTYNFLLSACVDGGQSDKAHKLFREWK 413

Query: 216 ----MIHKYNIKGTPEVYT-------IAINCCSQTGDW--EFACSVYDDMTKKGVIPDEV 262
               ++    ++    +++       +A N   +  D   + A +V  +M   G+ PD+ 
Sbjct: 414 TSGRILAGIEVQDESAIFSEWVRPDSVAYNTMMRACDKLPKQAEAVMQEMVSSGLRPDKR 473

Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
               LI+  G  G  + A +  Q     GI   +++Y++++
Sbjct: 474 SWCILINSYGCNGDKQGAVQAFQRMGRSGIIADVVAYTAII 514



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 96/269 (35%), Gaps = 37/269 (13%)

Query: 264 LSALIDFAG---HAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNAKNWQKALELY 319
           L  +ID  G      +VE     L+     G  V  ++  +  M AC+   N   AL   
Sbjct: 111 LQLVIDECGRLLQENRVEECIRCLERLAKCGFVVKNLVKPTLCMEACARMHNTALALRY- 169

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
               +  L   + + N ++    D   L    +V   ++S G+ P+  +Y IL+ AC R 
Sbjct: 170 ----ACLLPDILQSCNMIMQKFRDQGDLQSVFQVFQALESTGVRPDMYSYCILIDACGRC 225

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKW 439
            D E    +     + G + N+             Y     +N H  +            
Sbjct: 226 GDAEKATAIFEGLLKAGTVLNV-------------YVCNSMMNAHAGNIQH--------- 263

Query: 440 TSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLG---VSADALKRSN 496
               L +YR+   +G    V   + V    +L  N  +  RL E L    +  + L    
Sbjct: 264 ---VLRLYRQMQGSGIAADVTTYNIVFKACRLSKNPVLALRLYEELKAKEIKMNVLSYGT 320

Query: 497 LCSLIDGFGEYDPRAFSLLEEAASFGIVP 525
           L  +I G  +   R F +  +  S GIVP
Sbjct: 321 LIQVIFGEAKMLDRVFQMKHDMDSTGIVP 349


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 141/625 (22%), Positives = 252/625 (40%), Gaps = 86/625 (13%)

Query: 45  IDLLEDMERKG------LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNML 98
           +DLL+ M ++G      ++    V H  FFN  ++ KA        +    P + T+N++
Sbjct: 248 LDLLQMMAKQGGACSPDVVAYSTVIHG-FFNEGETGKACSLFHEMTRQGVKPDVVTYNLI 306

Query: 99  MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFENVK---- 151
           +     ++  + A  VLR +   G + D   Y+ +I   A  G++     MF  +K    
Sbjct: 307 IDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGL 366

Query: 152 -PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-----------------PDHIT 193
            P+ V  N+ + +  + G    A +    M A+ H  D                  D I 
Sbjct: 367 IPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIG 426

Query: 194 IGALMK----------------ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
           +   MK                A A  G VD A  ++  + +  +      Y+  I+  S
Sbjct: 427 LFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFS 486

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGI-SVG 295
           + G    A   ++ M  +G+ P+    S++I  F  H G V+A  E++ E  N+GI    
Sbjct: 487 RMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAK-ELVSEMINKGIPRPD 545

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           I+ +SS++ +         A ++++    I  +P V T N+LI   C   ++ K  ++L 
Sbjct: 546 IVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILD 605

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 415
            M+ +G+ P+ +TY+ LL    +   +  GL L  + +  GV PN V +  ++       
Sbjct: 606 AMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGL---- 661

Query: 416 EKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA 475
                       F +GR       T  A   + E I +GT  TV +   +LG L     A
Sbjct: 662 ------------FRAGR-------TVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCA 702

Query: 476 DIRERLVENLGVSADALKRSNLCSLIDGFGEYDPR--AFSLLEEAASFGIVPCVSFKEIP 533
           D    L + LG        + L ++I+   +   +  A  L    ++ G++P  S   + 
Sbjct: 703 DEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVM 762

Query: 534 VVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGE------ 587
           ++   +   +  A     ++ K     +  G++L N  I + +EK +I   G        
Sbjct: 763 IINLLKDGGVEDANNMFSSMEKS---GIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDG 819

Query: 588 KTIDIAERTTQAIAALLRRLGLPYQ 612
           K I +   TT  + +L  R G  YQ
Sbjct: 820 KRILLEASTTSLMLSLFSRKG-KYQ 843



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/358 (20%), Positives = 155/358 (43%), Gaps = 17/358 (4%)

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
           A F  VC+ +   + A         PT  T+N+LM  C  ++  +    +   +   GLK
Sbjct: 138 ALFNRVCREEAGTQVAV--------PTFCTYNILMDCCCRARRPDLGLALFGCILRTGLK 189

Query: 125 ADCKLYTTLITTCAKSGK----VDAMFENVK-----PDRVVFNALITACGQSGAVDRAFD 175
            D     TL+     + +    V+ +   +      P+ V ++ ++ A   +    RA D
Sbjct: 190 MDQITANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALD 249

Query: 176 VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235
           +L  M  +     PD +    ++    N G+  +A  ++  + +  +K     Y + I+ 
Sbjct: 250 LLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDA 309

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
             +    + A  V   MT  G  PD V  S +I      G+++ A ++ +E K +G+   
Sbjct: 310 LCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPN 369

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
           I++ +S + +       ++A E ++ M +   KP + +   L+            + + +
Sbjct: 370 IVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFN 429

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
            MKS G+  N   ++IL+ A  ++  V+  +++ ++ ++ GV P++V +  +I   SR
Sbjct: 430 SMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSR 487



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/389 (22%), Positives = 163/389 (41%), Gaps = 38/389 (9%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           S  +H Y  L   GR+ E   +  +M+++GL+      ++   ++CK  ++ KEA  FF 
Sbjct: 339 SCMIHGYATL---GRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRS-KEAAEFFD 394

Query: 86  LVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P + ++  L+   AS         +   ++  G+ A+C ++T LI   AK  
Sbjct: 395 SMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAK-- 452

Query: 142 KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                                     G VD A  +  EM  +   V PD +T   ++   
Sbjct: 453 -------------------------RGMVDDAMLIFTEMQQQ--GVSPDVVTYSTVISTF 485

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD 260
           +  G++  A E +  +    I+    VY+  I      G    A  +  +M  KG+  PD
Sbjct: 486 SRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPD 545

Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
            VF S++I+     G+V  A +I   A + G   G+I+++SL+          KA ++ +
Sbjct: 546 IVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILD 605

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
            M+ + ++P + T N L+       ++   + +  +M+  G+ PNT+TY I+L    R  
Sbjct: 606 AMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAG 665

Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
                     +  E G    + ++  I+G
Sbjct: 666 RTVAARKKFHEMIESGTTVTVSIYGIILG 694



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 66/328 (20%), Positives = 133/328 (40%), Gaps = 49/328 (14%)

Query: 38  QGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQKAIKEAFRFFKLVPN----PTL 92
            G + +  +L+ +M  KG+   D V+ +   N +CK  + + +A   F L  +    P +
Sbjct: 523 HGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGR-VMDAHDIFDLATDIGERPGV 581

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMF-- 147
            TFN L+         + AF++L  ++  G++ D   Y TL+    K+G+++    +F  
Sbjct: 582 ITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFRE 641

Query: 148 ---ENVKPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA- 200
              + VKP+ V +  ++      G++ A  + F  + E    V  V    I +G L +  
Sbjct: 642 MQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTV-TVSIYGIILGGLCRNN 700

Query: 201 CANAGQV------------------------------DRAREVYKMIHKYNIKGTPEVYT 230
           CA+   +                              + A+E++  I    +      Y 
Sbjct: 701 CADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYG 760

Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
           + I    + G  E A +++  M K G++P    L+ +I      G++  A   L +   +
Sbjct: 761 VMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGK 820

Query: 291 GISVGIISYSSLMGACSNAKNWQKALEL 318
            I +   + S ++   S    +Q+ ++L
Sbjct: 821 RILLEASTTSLMLSLFSRKGKYQEDIKL 848


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 101/436 (23%), Positives = 181/436 (41%), Gaps = 54/436 (12%)

Query: 30  HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           ++YN LI    R+G   E   + ++M+  G  + DKV      +V    +  +EA    K
Sbjct: 257 YTYNTLISCCRRRGLYREAAQMFDEMKAAGF-EPDKVTFNSLLDVYGKARRHEEAIGVLK 315

Query: 86  LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            + N    P++ T+N L+S        E A ++ + ++  G+K D   YTTLI+   + G
Sbjct: 316 KMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIG 375

Query: 142 KVDA-------MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
           K+DA       M  N   P+   +NALI   G  G       V  ++ +  +   PD +T
Sbjct: 376 KIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYV--PDVVT 433

Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
              L+      G       V+K + K       + Y   I+  S+ G ++ A  +Y  M 
Sbjct: 434 WNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMI 493

Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
           + G+ PD    +A++      G+   A ++  E +++      +SYSSL+ A +NAK   
Sbjct: 494 EAGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLD 553

Query: 314 KALELYEHMKSIKLKP-----------------------------------TVSTMNALI 338
           K   L E + + +++P                                    ++ +NA++
Sbjct: 554 KMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMV 613

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
           +       + K  EVL+ MK   +  +  TY+ L+    R  D E    +L++ K  G+ 
Sbjct: 614 SIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMR 673

Query: 399 PNLVMFKCIIGMCSRR 414
           P+   +  +I    R+
Sbjct: 674 PDRYSYNTVIYAYGRK 689



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 154/351 (43%), Gaps = 36/351 (10%)

Query: 29  LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
           LH Y+++    +  E + L++ M+  G+ ++D+  +    + C+ +   +EA + F  + 
Sbjct: 227 LHVYSKMSVPWK--EVVVLVDSMKEDGI-ELDRYTYNTLISCCRRRGLYREAAQMFDEMK 283

Query: 89  ----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
                P   TFN L+ V   ++  E A  VL+ ++ AG              C       
Sbjct: 284 AAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAG--------------CT------ 323

Query: 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                  P  V +N+LI+A  + G ++ A ++  EM  E   + PD +T   L+      
Sbjct: 324 -------PSVVTYNSLISAYVKDGLLEEALELKQEM--EFRGMKPDVVTYTTLISGLDRI 374

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G++D A   Y  + +         Y   I      G +     V+DD+   G +PD V  
Sbjct: 375 GKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTW 434

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           + L+   G  G       + +E K  G      +Y SL+ + S    + +A+E+Y+ M  
Sbjct: 435 NTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIE 494

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
             + P +ST NA+++AL  G +  +  ++ ++M+     P+ ++YS LL A
Sbjct: 495 AGIYPDISTYNAVLSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHA 545



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 147/347 (42%), Gaps = 17/347 (4%)

Query: 88  PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK----- 142
           P P  S +  L+S  + +     A  V R + + G++     Y  ++   +K        
Sbjct: 181 PAPDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEV 240

Query: 143 ---VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
              VD+M E+ ++ DR  +N LI+ C + G    A  +  EM A     +PD +T  +L+
Sbjct: 241 VVLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAA--GFEPDKVTFNSLL 298

Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKG 256
                A + + A  V K +   N   TP V  Y   I+   + G  E A  +  +M  +G
Sbjct: 299 DVYGKARRHEEAIGVLKKME--NAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRG 356

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           + PD V  + LI      GK++AA     E    G S  + +Y++L+        + + +
Sbjct: 357 MKPDVVTYTTLISGLDRIGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMM 416

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
            +++ ++S    P V T N L+          +   V  +MK  G  P   TY  L+ + 
Sbjct: 417 IVFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSY 476

Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTL 421
            R    +  + +  +  E G+ P++  +  ++   +R  R+ +A  L
Sbjct: 477 SRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKL 523



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 115/254 (45%), Gaps = 12/254 (4%)

Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
            Y   I+CC + G +  A  ++D+M   G  PD+V  ++L+D  G A + E A  +L++ 
Sbjct: 258 TYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKM 317

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
           +N G +  +++Y+SL+ A       ++ALEL + M+   +KP V T   LI+ L    ++
Sbjct: 318 ENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGKI 377

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
              +   S+M   G  PN  TY+ L+     +      +++    +  G +P++V +  +
Sbjct: 378 DAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVTWNTL 437

Query: 408 IGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGT 455
           + +  +    +           +G     + + SL            A+ +Y+  I AG 
Sbjct: 438 LAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGI 497

Query: 456 IPTVEVVSKVLGCL 469
            P +   + VL  L
Sbjct: 498 YPDISTYNAVLSAL 511



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 147/331 (44%), Gaps = 11/331 (3%)

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
           P + T+N L++V   +        V + +++AG   +   Y +LI++ ++ G  D   E 
Sbjct: 429 PDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEI 488

Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
                   + PD   +NA+++A  + G   +A  + AEM  E     PD ++  +L+ A 
Sbjct: 489 YKRMIEAGIYPDISTYNAVLSALARGGRWVQAEKLFAEM--EDRDCKPDELSYSSLLHAY 546

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
           ANA ++D+ + + + I+   I+    +    +   ++          + ++ ++    D 
Sbjct: 547 ANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDI 606

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
             L+A++   G    V+   E+L   K   I+    +Y+SLM   S   + +K   +   
Sbjct: 607 NVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTE 666

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
           +KS  ++P   + N +I A     Q+ +   + S+MK  G+ P+ +TY+I + +      
Sbjct: 667 IKSSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLM 726

Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            E  + L+      G  PN   +  I+ G C
Sbjct: 727 FEEAIDLVRYLVAQGCKPNERTYNSILEGYC 757



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 71/384 (18%), Positives = 160/384 (41%), Gaps = 50/384 (13%)

Query: 26  SEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF 81
           S  L +YN LI+    +G+ +E + + +D+   G +  D V       V        E  
Sbjct: 393 SPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVP-DVVTWNTLLAVFGQNGLDSEVS 451

Query: 82  RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
             FK +      P   T+  L+S  +     + A ++ + + EAG+  D   Y  +++  
Sbjct: 452 GVFKEMKKAGYIPERDTYVSLISSYSRCGLFDQAMEIYKRMIEAGIYPDISTYNAVLSAL 511

Query: 138 AKSGK---VDAMF-----ENVKPDRVVFNALITACGQSGAVDR----AFDVLAE------ 179
           A+ G+    + +F      + KPD + +++L+ A   +  +D+    + D+ A+      
Sbjct: 512 ARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHN 571

Query: 180 --------MNAEVHPVDP---------------DHITIGALMKACANAGQVDRAREVYKM 216
                   +N +V+ +                 D   + A++        V +  EV  +
Sbjct: 572 WLVKTLVLVNNKVNSLSETEKAFQELRRRRCSLDINVLNAMVSIYGKNKMVKKVEEVLTL 631

Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
           + + +I  +   Y   ++  S+ GD E   ++  ++   G+ PD    + +I   G  G+
Sbjct: 632 MKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKGQ 691

Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
           ++ A  +  E K  G+   I++Y+  + +      +++A++L  ++ +   KP   T N+
Sbjct: 692 MKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYNS 751

Query: 337 LITALCDGDQLPKTMEVLSDMKSL 360
           ++   C   ++ +    LS++  +
Sbjct: 752 ILEGYCRHGRMVEAKSFLSNLPKI 775


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 157/398 (39%), Gaps = 65/398 (16%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKV-------DAM 146
           FN +++  A  +D  G  ++  L+Q  A ++ D   Y  L+    K+G+V       D M
Sbjct: 139 FNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGM 198

Query: 147 FE---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                +++PD V  N ++    +SG V  A   + +  + VH   P+ +T   L+ A   
Sbjct: 199 SRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCR 258

Query: 204 AGQVDRAREVYKMIHKYNIKGTPE------------------------------------ 227
            G +  A   Y+++ K   +G P+                                    
Sbjct: 259 VGNISMA---YELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGK 315

Query: 228 ----VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                Y+  +     T +   A  ++ +   +G  PD +    +I     AG++E A  +
Sbjct: 316 GNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSM 375

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
               K  G  +   +Y+ L+      K   +A EL + MK + ++P V T N L++  C 
Sbjct: 376 ASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCK 435

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
                   E+L  M   G  P+ IT+  L+    +   ++  L +L    E G+ PN V+
Sbjct: 436 AGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVI 495

Query: 404 FKCIIGMCSRRYE-----------KARTLNEHVLSFNS 430
           +  +I    +R +           K +++  +V +FN+
Sbjct: 496 YNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNA 533



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 164/389 (42%), Gaps = 46/389 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-----VCKSQKAIKEAFRFFKLV 87
           N L + GR+ + + +L+ M R+   D+D        N     +CKS + ++EA  F +  
Sbjct: 180 NGLCKAGRVGDALRVLDGMSRQ---DLDIRPDVVTLNTVVDGLCKSGR-VQEALAFVEQR 235

Query: 88  PN------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P   T+N L+       +   A++++  ++  G+  +     T++    ++G
Sbjct: 236 MSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAG 295

Query: 142 KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +  A  E  +  R V+       G+  AV                      T   L+ A 
Sbjct: 296 RTGAALEFFREKRTVWPE-----GKGNAV----------------------TYSTLVGAL 328

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            +   V  A E++    K +   +P+  +Y   I+  +Q G  E ACS+   M + G   
Sbjct: 329 LHTNNVGMAMELFH--EKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKL 386

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D    + LI       ++  A+E+LQE K  GI   + +Y++L+     A ++    EL 
Sbjct: 387 DTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELL 446

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M     +P+V T   L+   C   ++ + + +L  M   G+ PN + Y+ L+    ++
Sbjct: 447 GKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKR 506

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            DV++ + L  + KE  V  N+  F  ++
Sbjct: 507 GDVDLAIELFDEMKEKSVPANVTTFNALL 535



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 100/233 (42%), Gaps = 16/233 (6%)

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
            R  + C    ++KEA   FKL        +N+L++     K    A+++L+ ++E G++
Sbjct: 367 GRLEDACSMASSMKEAG--FKL----DTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIR 420

Query: 125 ADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDV 176
            D   Y TL++   K+G   A+ E          +P  + F  L+    + G +D A  +
Sbjct: 421 PDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRI 480

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
           L  M+     + P+++    L+      G VD A E++  + + ++      +   +   
Sbjct: 481 LRSMDES--GIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGL 538

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
                 E A  + D M ++   PD V +  L+++    G+ +     +Q+ ++
Sbjct: 539 RDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQQGEH 591


>gi|168061839|ref|XP_001782893.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665615|gb|EDQ52293.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 713

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 139/591 (23%), Positives = 249/591 (42%), Gaps = 65/591 (10%)

Query: 25  VSEQLHSYNRLIRQGRISECIDLLEDME-RKGLLDM----DKVYHARFFNVCKSQKAIKE 79
           +  Q+ +YN ++     S   D+   ME  + L+DM    D V      N       I++
Sbjct: 89  IHPQVSAYNVILEGCTRSTRGDINGMMEAHRILMDMGLQQDSVTFNIIMNALNRVGRIRD 148

Query: 80  AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
             R++ L+      P L+T ++L++    ++D      VL  ++  G+KAD  +Y +LI+
Sbjct: 149 VDRYWALMRMGRIVPDLTTCSILINAFGRARDWHKVDLVLAEMETYGIKADLMIYNSLIS 208

Query: 136 TCAKSG---KVDAMFENVKP---------------DRVVFNALITACGQSGAVDRAFDVL 177
              K+G   +V+ + ++++                D V +N L+   G++G +D      
Sbjct: 209 VYGKAGLFYEVELVVKSLRAEIARREDLGNSSLAFDLVTYNTLLDVYGKAGRLDDVIYWF 268

Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
            EM      V PD +T  +L+ A   A   D   EV ++  KYN K     Y   +    
Sbjct: 269 GEMKKS--GVQPDVLTFDSLVNAYGKASHYDG--EVLELFRKYNYKSDLVFYNTLLFMFG 324

Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
           + G +  A  + +DM   G +P     ++LI   G   + + A   L+  K  G+     
Sbjct: 325 KGGHYADAWKILEDMKAAGFMPTSETYNSLILAFGRGSQWQEAENTLERMKANGVKPVAQ 384

Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
           S+S L+ A S +    K  +L   MK   L   ++  N+L+        +   ++     
Sbjct: 385 SFSFLLEAYSLSGQIPKGEKLIVKMKEENLIYGIAGHNSLLRFYMRAGDIGSIIQTYETC 444

Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK------CIIGMC 411
           ++ G  PN  ++  ++ A  +++ V+     ++Q  E+   P  V F         +G C
Sbjct: 445 QTRGPKPNQSSFVPMIEALTKENTVDERFWGIAQDLENA--PFDVHFAIHGALLSALGRC 502

Query: 412 SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQL 471
            +  +  R L   +L      P I N        ++ E   A +  + E   K L  L  
Sbjct: 503 GQSPDADRLLG--ILKRLGCSPDICN--------LFEEGEAAQSKLSGEEAWKRLATL-- 550

Query: 472 PYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDP--RAFSLLEEAASFGIVP--CV 527
            +N+      +E  GV+ +A +R+   +LID    +D   RA  + E + S G+      
Sbjct: 551 -FNS------LEQEGVNMEA-ERNFHNALIDALWRFDYKLRALKVTELSVSLGVFGSNVC 602

Query: 528 SFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPN-VNILLPVE 577
            +K+    +D R      A++ LLT L G+R  + +G K+P+ V ILL  E
Sbjct: 603 QWKDC-WSLDVRFAGTGAAQILLLTWLSGIRQAIKSGEKMPSKVKILLAWE 652



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 148/359 (41%), Gaps = 35/359 (9%)

Query: 64  HARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL 123
           +AR  NV +   A+ E   F K   +P+   + +LMS        +    +L+ ++EAG+
Sbjct: 35  NARRMNVAE---AVFE--EFVKSGMSPSHDDYVILMSGYTKCGSLQRGIGILQKMREAGI 89

Query: 124 KADCKLYTTLITTCAKS--GKVDAMFE--------NVKPDRVVFNALITACGQSGA---V 170
                 Y  ++  C +S  G ++ M E         ++ D V FN ++ A  + G    V
Sbjct: 90  HPQVSAYNVILEGCTRSTRGDINGMMEAHRILMDMGLQQDSVTFNIIMNALNRVGRIRDV 149

Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
           DR + ++      +  + PD  T   L+ A   A    +   V   +  Y IK    +Y 
Sbjct: 150 DRYWALM-----RMGRIVPDLTTCSILINAFGRARDWHKVDLVLAEMETYGIKADLMIYN 204

Query: 231 IAINCCSQTG-DWEFACSV---------YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
             I+   + G  +E    V          +D+    +  D V  + L+D  G AG+++  
Sbjct: 205 SLISVYGKAGLFYEVELVVKSLRAEIARREDLGNSSLAFDLVTYNTLLDVYGKAGRLDDV 264

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
                E K  G+   ++++ SL+ A   A ++    E+ E  +    K  +   N L+  
Sbjct: 265 IYWFGEMKKSGVQPDVLTFDSLVNAYGKASHYDG--EVLELFRKYNYKSDLVFYNTLLFM 322

Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
              G       ++L DMK+ G  P + TY+ L++A  R    +     L + K +GV P
Sbjct: 323 FGKGGHYADAWKILEDMKAAGFMPTSETYNSLILAFGRGSQWQEAENTLERMKANGVKP 381



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 111/258 (43%), Gaps = 31/258 (12%)

Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
           PDE+    +I+   +A ++  A  + +E    G+S     Y  LM   +   + Q+ + +
Sbjct: 21  PDELVYRTIINVLINARRMNVAEAVFEEFVKSGMSPSHDDYVILMSGYTKCGSLQRGIGI 80

Query: 319 YEHMKSIKLKPTVSTMNALI---TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
            + M+   + P VS  N ++   T    GD +   ME    +  +GL  +++T++I++ A
Sbjct: 81  LQKMREAGIHPQVSAYNVILEGCTRSTRGD-INGMMEAHRILMDMGLQQDSVTFNIIMNA 139

Query: 376 CERKD---DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
             R     DV+    L+   +   ++P+L     +I    R    AR  ++  L      
Sbjct: 140 LNRVGRIRDVDRYWALMRMGR---IVPDLTTCSILINAFGR----ARDWHKVDLVL---- 188

Query: 433 PQIENKWTSLALMVYREAIV----AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVS 488
            ++E       LM+Y   I     AG    VE+V K L        A+I  R  E+LG S
Sbjct: 189 AEMETYGIKADLMIYNSLISVYGKAGLFYEVELVVKSL-------RAEIARR--EDLGNS 239

Query: 489 ADALKRSNLCSLIDGFGE 506
           + A       +L+D +G+
Sbjct: 240 SLAFDLVTYNTLLDVYGK 257



 Score = 45.8 bits (107), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 46/220 (20%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280
           ++K    VY   IN          A +V+++  K G+ P       L+      G ++  
Sbjct: 18  DLKPDELVYRTIINVLINARRMNVAEAVFEEFVKSGMSPSHDDYVILMSGYTKCGSLQRG 77

Query: 281 FEILQEAKNQGISVGIISYSSLMGACSNAK--NWQKALELYEHMKSIKLKPTVSTMNALI 338
             ILQ+ +  GI   + +Y+ ++  C+ +   +    +E +  +  + L+    T N ++
Sbjct: 78  IGILQKMREAGIHPQVSAYNVILEGCTRSTRGDINGMMEAHRILMDMGLQQDSVTFNIIM 137

Query: 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
            AL    ++       + M+   + P+  T SIL+ A  R  D     ++L++ +  G+ 
Sbjct: 138 NALNRVGRIRDVDRYWALMRMGRIVPDLTTCSILINAFGRARDWHKVDLVLAEMETYGIK 197

Query: 399 PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENK 438
            +L+++  +I +    Y KA    E  L   S R +I  +
Sbjct: 198 ADLMIYNSLISV----YGKAGLFYEVELVVKSLRAEIARR 233


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 165/395 (41%), Gaps = 17/395 (4%)

Query: 25  VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           V   + +YN L+    + GR  E   + + M ++G       Y             +K  
Sbjct: 304 VEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMH 363

Query: 81  FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                +V N   P    FN+L+         + A  +   ++  GL  D   Y  ++   
Sbjct: 364 HLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDAL 423

Query: 138 AKSGKVD---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
              GKVD   A F     E + PD VVF  LI         D+A ++  EM      + P
Sbjct: 424 CMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGR--GICP 481

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           ++I    L+      G V RA+ ++ ++ + +++     Y   I+     G  + A  + 
Sbjct: 482 NNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLL 541

Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
           + M   GV P+EV  + +I+     G++E AF + ++  ++G++ GI++YS+++     A
Sbjct: 542 EGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQA 601

Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
           +    A ELY  M    +K  + T N ++  LC  +     + +  ++  +       T+
Sbjct: 602 RRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTF 661

Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
           +I++ A  +    +    L +     G++PN+V +
Sbjct: 662 NIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTY 696



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/415 (22%), Positives = 171/415 (41%), Gaps = 16/415 (3%)

Query: 21  YAHDVSEQLHSYNRLIRQGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           Y  DV       N L+R+GR +     L + M  +GL      Y++    + K++   K 
Sbjct: 198 YPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKA 257

Query: 80  AFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
           A    ++V N   P   T N L+    SS     A  V + +   G++ D   Y TL+  
Sbjct: 258 AVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGY 317

Query: 137 CAKSGK-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
             K+G+        D+M +   KP+   +  L+      G++ +   +L  M    + + 
Sbjct: 318 LCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVR--NGIQ 375

Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
           PDH     L+      G+VD A  ++  + +  +      Y I ++     G  + A + 
Sbjct: 376 PDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQ 435

Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
           +  +  +G+ PD V    LI       K + A E+  E   +GI    I +++L+     
Sbjct: 436 FGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCK 495

Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
                +A  +++ M  + ++  V T N LI   C   ++ +  ++L  M   G+ PN +T
Sbjct: 496 EGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVT 555

Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG--MCSRRYEKARTL 421
           Y+ ++    +   +E    L  Q    GV P +V +  I+     +RR   A+ L
Sbjct: 556 YNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKEL 610



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/354 (21%), Positives = 142/354 (40%), Gaps = 56/354 (15%)

Query: 72  KSQKAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA-----GLKA 125
           ++ +A+  A R   ++   P + ++ +L+        S+ A  +L  +  A     G   
Sbjct: 141 RTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPP 200

Query: 126 DCKLYTTLITTCAKSGK--------VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDV 176
           D   Y T+I    + G+         D M +  + PD V +N++I+A  ++ A+D+A  V
Sbjct: 201 DVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVV 260

Query: 177 LAEM--NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
           L  M  N  +    P+ IT  +L+    ++G+ + A  V+K + +  ++     Y   + 
Sbjct: 261 LVRMVKNGAM----PNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMG 316

Query: 235 CCSQTGDWEFACSVYDDMTKK-----------------------------------GVIP 259
              + G    A  ++D M K+                                   G+ P
Sbjct: 317 YLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQP 376

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D    + LI      GKV+ A  +  + + QG++   ++Y  +M A         A+  +
Sbjct: 377 DHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQF 436

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
             + S  L P       LI  LC  D+  K  E+  +M   G+CPN I ++ LL
Sbjct: 437 GRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLL 490



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 8/192 (4%)

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI-LQEA 287
           Y++ I+CCS+ G  + A +    + + G   + +  S L+       +   A +I L+  
Sbjct: 94  YSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIALRRM 153

Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-----LKPTVSTMNALITALC 342
              G +  + SY+ L+    +    Q+AL L   M           P V + N +I  L 
Sbjct: 154 PVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLL 213

Query: 343 -DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
            +G QL     +   M   GL P+ +TY+ ++ A  +   ++   ++L +  ++G +PN 
Sbjct: 214 REGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNR 273

Query: 402 VMFKCII-GMCS 412
           +    ++ G CS
Sbjct: 274 ITHNSLLHGYCS 285



 Score = 45.8 bits (107), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 127/320 (39%), Gaps = 47/320 (14%)

Query: 24  DVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
           DV   + +YN LI      G++ E   LLE M   G+   +  Y+      CK+ + I++
Sbjct: 513 DVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGR-IED 571

Query: 80  AFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
           AF  F+ +     NP + T++ ++         +G FQ  R        A  +LY  +I 
Sbjct: 572 AFSLFRQMASKGVNPGIVTYSTIL---------QGLFQARRTA------AAKELYLWMI- 615

Query: 136 TCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
              KSG        +K D   +N ++    Q+   D A  +    N  +     ++ T  
Sbjct: 616 ---KSG--------IKFDIGTYNIILLGLCQNNCTDDALRIF--QNLYLIDFHLENRTFN 662

Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
            ++ A    G+ D A++++  +    +      Y + +    + G  E    ++  + K 
Sbjct: 663 IMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKN 722

Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
           G   +   L+AL+      G+V  A   L +      S+   +  SL+   S+ K  Q  
Sbjct: 723 GCTANSRMLNALVGKLLQKGEVRKAGVYLSKIDENNFSLEASTAESLVLLVSSGKYDQ-- 780

Query: 316 LELYEHMKSI--KLKPTVST 333
                H+ +I  K +P V T
Sbjct: 781 -----HINAIPEKYRPVVKT 795


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 177/403 (43%), Gaps = 27/403 (6%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLST 94
           G+  +   +L++M RKG +     Y      +C+++K ++++F  F+ +     NP + T
Sbjct: 431 GKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKK-VEKSFLLFQEMKRAGVNPDVYT 489

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFENV 150
           + +L+     +   E A      ++  G   +   YT L+    KS ++    D     V
Sbjct: 490 YTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMV 549

Query: 151 K----PDRVVFNALITACGQSGAVDRAFDVLAEM-----NAEVH---------PVDPDHI 192
                P+ V ++ALI    ++G + +A +V  ++     N E            + P+ +
Sbjct: 550 DAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVV 609

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
           T GAL+     A +V  A E+   +     +    VY   I+   + G  + A  V+  M
Sbjct: 610 TYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRM 669

Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
           TK G +P     ++LID     G+++ A ++L E  N   +  +++Y++++   S     
Sbjct: 670 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEI 729

Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
           +KAL L   M+     P V T  ALI  L    +   ++++   M S G  PN +TY +L
Sbjct: 730 EKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVL 789

Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRY 415
           +  C     ++   +LL + K      +L  + C +   S+++
Sbjct: 790 INHCCAAGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKF 832



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 80/384 (20%), Positives = 148/384 (38%), Gaps = 49/384 (12%)

Query: 75  KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           +A++E  R       P+  T+N L+ V AS+   E  F+V + +  +G   D        
Sbjct: 187 EALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFA 246

Query: 135 TTCAKSGK-VDAMF----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
               K G+  DA+     E+   D V+   +I+   ++   + A   L  M    +   P
Sbjct: 247 QALCKVGRWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRC--NSCIP 304

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
           + +T   L+       Q    + +  M+        P ++   ++     GD+ +A  ++
Sbjct: 305 NVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLF 364

Query: 250 DDMTKKGVIP---------------DEVFLSALIDFAGH--------------------- 273
           + MT  G  P               +E+  + L+D                         
Sbjct: 365 NRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFS 424

Query: 274 -----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                 GK E AF+IL+E   +G      +Y+ ++     AK  +K+  L++ MK   + 
Sbjct: 425 RCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVN 484

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P V T   LI + C    + +      +M+S+G  PN +TY+ LL A  +   +     +
Sbjct: 485 PDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDI 544

Query: 389 LSQAKEDGVIPNLVMFKCII-GMC 411
             +  +    PN V +  +I G+C
Sbjct: 545 FHRMVDAACYPNAVTYSALIDGLC 568



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 101/487 (20%), Positives = 185/487 (37%), Gaps = 102/487 (20%)

Query: 21  YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           +  D S        L +  ++ +   L ++M+R G+      Y     + CK+   I++A
Sbjct: 448 FVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKA-GLIEQA 506

Query: 81  FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
             +F  + +    P + T+  L+     SK    A  +   + +A    +   Y+ LI  
Sbjct: 507 RSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDG 566

Query: 137 CAKSGKV-------------------DAMFE-----NVKPDRVVFNALITACGQSGAVDR 172
             K+G++                   D  FE      + P+ V + ALI    ++  V  
Sbjct: 567 LCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSD 626

Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY---------KMIHKY--- 220
           A ++L  M A     +P+ I   AL+      G++D A+EV+           +H Y   
Sbjct: 627 AHELLDAMLAA--GCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSL 684

Query: 221 ---------------------NIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGV 257
                                N    P V  YT  I+  S+ G+ E A ++   M +KG 
Sbjct: 685 IDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGC 744

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-------- 309
            P+ V  +ALID  G  GK +A+ ++ ++  ++G +   ++Y  L+  C  A        
Sbjct: 745 SPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHL 804

Query: 310 -------KNWQKALELY------------------EHMKSIKLKPTVSTMNALITALCDG 344
                   +W K L+ Y                  E M+S +  P       LI +    
Sbjct: 805 LLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGMLIDSFSKA 864

Query: 345 DQLPKTMEVLSDMKSLGLCPN---TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
            +L   +E+  ++  +    N   T  Y+ L+ A      VE    L ++    G++P+L
Sbjct: 865 GRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDL 924

Query: 402 VMFKCII 408
           ++F  ++
Sbjct: 925 IVFVSLV 931



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 86/412 (20%), Positives = 161/412 (39%), Gaps = 41/412 (9%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
           L + GR ++ +++LE    K   ++D V   +  +         EA  F  ++  N   P
Sbjct: 249 LCKVGRWADALNMLE----KEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIP 304

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
            + T+  L+S     K      +++ ++   G   +  L+ +L+     +G     ++  
Sbjct: 305 NVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLF 364

Query: 149 ------NVKPDRVVFNALI-TACGQ-----SGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
                    P  V +N  I + CGQ     +  +D    V  EM A    ++   +    
Sbjct: 365 NRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNK--VNTAN 422

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
             +     G+ ++A ++ K + +         YT  I    Q    E +  ++ +M + G
Sbjct: 423 FSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAG 482

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
           V PD    + LID    AG +E A     E ++ G S  +++Y++L+ A   +K   +A 
Sbjct: 483 VNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAH 542

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM----------------KSL 360
           +++  M      P   T +ALI  LC   ++ K  EV   +                 + 
Sbjct: 543 DIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTC 602

Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
            + PN +TY  L+    +   V     LL      G  PN +++  +I G C
Sbjct: 603 TIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFC 654



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 125/311 (40%), Gaps = 34/311 (10%)

Query: 32  YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFF 84
           Y+ LI    + G+I    ++   M + G L     Y +   R F   +   A+K      
Sbjct: 646 YDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEML 705

Query: 85  KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
               NP + T+  ++   +   + E A  +L L++E G   +   YT LI    K+GK D
Sbjct: 706 NDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKAD 765

Query: 145 AMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI---- 192
           A  +  K        P+ V +  LI  C  +G +D A  +L EM    H   P H+    
Sbjct: 766 ASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGLLDEAHLLLDEMK---HTHWPKHLQGYH 822

Query: 193 --TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
               G   K  A+ G ++        +  +       VY + I+  S+ G  E A  ++ 
Sbjct: 823 CAVQGFSKKFIASLGLLEE-------MESHETVPIAPVYGMLIDSFSKAGRLETALELHK 875

Query: 251 DMTKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
           ++ +      +      ++LI     A +VE AF +  E   +GI   +I + SL+    
Sbjct: 876 ELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMTRKGIVPDLIVFVSLVKGLI 935

Query: 308 NAKNWQKALEL 318
               W +AL+L
Sbjct: 936 EVNKWDEALQL 946



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 75/369 (20%), Positives = 137/369 (37%), Gaps = 58/369 (15%)

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
           T + ++ L  +      +  A ++LR + E   +   +L   L+  C + G  D   E +
Sbjct: 133 TGACYDALAEILGFEDPARTAERLLREIGEDDREVLRRLLNVLVRRCCRHGLWDEALEEL 192

Query: 151 --------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
                   +P  V +NAL+     +G V+  F V  EM+A    +D    TIG   +A  
Sbjct: 193 GRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRS--TIGYFAQALC 250

Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
             G   R  +   M+ K +      + T  I+   +   +  A S    M     IP+ V
Sbjct: 251 KVG---RWADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVV 307

Query: 263 FLSALIDFAGHAGKVEAAF--EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
               L+  +G   K +  +   I+     +G +     ++SL+    NA ++  A +L+ 
Sbjct: 308 TYRTLL--SGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAYAYKLFN 365

Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLP-------------------------------- 348
            M +    P     N  I ++C  ++LP                                
Sbjct: 366 RMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSR 425

Query: 349 ---------KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
                    K  ++L +M   G  P+T TY+ ++    +   VE   +L  + K  GV P
Sbjct: 426 CLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNP 485

Query: 400 NLVMFKCII 408
           ++  +  +I
Sbjct: 486 DVYTYTILI 494



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 125/320 (39%), Gaps = 42/320 (13%)

Query: 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG 295
           C + G W+ A      +   G  P  V  +AL+     AG+VE  F + +E    G  + 
Sbjct: 179 CCRHGLWDEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMD 238

Query: 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
             +      A      W  AL + E  +   L   + T   +I+ L +     + M  L 
Sbjct: 239 RSTIGYFAQALCKVGRWADALNMLEK-EDFNLDTVLCTQ--MISGLMEASLFNEAMSFLH 295

Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
            M+     PN +TY  LL    +K        +++    +G  PN  +F  ++ G C   
Sbjct: 296 RMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYC--- 352

Query: 415 YEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----Q 470
                         N+G         + A  ++      G+ P     +  +G +    +
Sbjct: 353 --------------NAGD-------YAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEE 391

Query: 471 LPYNA---DIRERLVENLGVSADALKR---SNLCSLIDGFGEYDPRAFSLLEEAASFGIV 524
           LP NA   D+ E++ E +  ++  L +   +N    + G G+++ +AF +L+E    G V
Sbjct: 392 LP-NAELLDLVEKVYEEMLAASCVLNKVNTANFSRCLCGVGKFE-KAFQILKEMMRKGFV 449

Query: 525 PCVS--FKEIPVVVDARKLE 542
           P  S   K I  +  A+K+E
Sbjct: 450 PDTSTYTKVITFLCQAKKVE 469


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 145/326 (44%), Gaps = 23/326 (7%)

Query: 68  FNVCKSQKAIKEAFRFFKLVPN-----------PTLSTFNMLMSVCASSKDSEGAFQVLR 116
           F+ C+         ++FKLV              +L  FN+LM       D   A  V  
Sbjct: 88  FDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFD 147

Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMF--------ENVKPDRVVFNALITACGQSG 168
            + + GL+     Y TL+    + G +D  F          V+PD   ++ LI    +  
Sbjct: 148 AITKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKES 207

Query: 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228
            +D A ++  EM   V  + P+ +T   L+      G+VD A E+YK +   ++      
Sbjct: 208 KMDDANELFDEM--LVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLIT 265

Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
           Y   I    + GD + A  + D+M+ KG+ PD++  + LI+     G +++AFE  +   
Sbjct: 266 YNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMI 325

Query: 289 NQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
            + I +  ++Y++L+ G C   ++   A ++   M S+ LKP   T   +I   C    +
Sbjct: 326 QENIRLDEVAYTALISGXCQEGRS-VDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDV 384

Query: 348 PKTMEVLSDMKSLGLCPNTITYSILL 373
               ++L +M+  G  P+ +TY++L+
Sbjct: 385 WXGSKLLKEMQRDGHVPSVVTYNVLM 410



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 131/299 (43%), Gaps = 10/299 (3%)

Query: 118 VQEAGLKADCKLYTTLITTCAKSGKV---DAMFENV-----KPDRVVFNALITACGQSGA 169
           + E G  A    +  L+    K G +    ++F+ +     +P  V +N L+    + G 
Sbjct: 114 ILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGD 173

Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
           +D  F + + M A    V PD  T   L+       ++D A E++  +    +      +
Sbjct: 174 LDEGFXLKSXMLAS--GVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTF 231

Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
           T  I+   + G  + A  +Y  M  + + PD +  + LI      G ++ A  ++ E   
Sbjct: 232 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSV 291

Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
           +G+    I+Y++L+  C    +   A E  + M    ++       ALI+  C   +   
Sbjct: 292 KGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVD 351

Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
             ++L +M S+GL P+  TY++++    +  DV  G  LL + + DG +P++V +  ++
Sbjct: 352 AEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLM 410



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 109/265 (41%), Gaps = 6/265 (2%)

Query: 151 KPDRVVFNALITACGQSGAVDRAFDV--LAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           + D  VF+ LI A  +SG +  A +   L   +    P D     +  LMK         
Sbjct: 50  RSDIYVFSGLIAAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKL----KYFK 105

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
                Y+ I +     +   + I ++   + GD   A SV+D +TK G+ P  V  + L+
Sbjct: 106 LVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLM 165

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
           +     G ++  F +       G+   + +YS L+           A EL++ M    L 
Sbjct: 166 NGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLV 225

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           P   T   LI   C   ++   ME+   M S  L P+ ITY+ L+    +K D++    L
Sbjct: 226 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 285

Query: 389 LSQAKEDGVIPNLVMFKCIIGMCSR 413
           + +    G+ P+ + +  +I  C +
Sbjct: 286 IDEMSVKGLKPDKITYTTLINGCCK 310



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 103/257 (40%), Gaps = 23/257 (8%)

Query: 31  SYNRL----IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
           SYN L    IR G + E   L   M   G+      Y      +CK  K + +A   F  
Sbjct: 160 SYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESK-MDDANELFDE 218

Query: 86  -----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
                LVPN    TF  L+     +   + A ++ + +    L  D   Y TLI    K 
Sbjct: 219 MLVKGLVPNGV--TFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKK 276

Query: 141 GK-------VDAM-FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
           G        +D M  + +KPD++ +  LI  C + G +D AF+    M  E   +  D +
Sbjct: 277 GDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQE--NIRLDEV 334

Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
              AL+      G+   A ++ + +    +K     YT+ IN   + GD      +  +M
Sbjct: 335 AYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEM 394

Query: 253 TKKGVIPDEVFLSALID 269
            + G +P  V  + L++
Sbjct: 395 QRDGHVPSVVTYNVLMN 411


>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Cucumis sativus]
          Length = 830

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 177/394 (44%), Gaps = 19/394 (4%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRF 83
           SYN L+      G + E +   +DME+ G+ + D V +   A+ F +       ++  + 
Sbjct: 308 SYNILLHGLCVAGSMDEALGFTDDMEKHGV-EPDVVTYNTLAKGFLLLGLMSGARKVVQK 366

Query: 84  FKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             L   NP L T+  L+       + E A ++ +     G K +   Y  L++   K G+
Sbjct: 367 MLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGR 426

Query: 143 VD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           ++    +F+      ++PD +V++ LI    + G V RA+ +  +M  +     P H   
Sbjct: 427 IEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKF--PHHFAQ 484

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            A++      G +  AR  +    + ++     +Y I I+   +      A  +Y  M +
Sbjct: 485 RAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIE 544

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           +G+ P  V  + LI+     G +  A ++L+  + +G+   +++Y++LM A     N Q+
Sbjct: 545 RGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQE 604

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
                  M++  + PT  T   LI  LC  +++ +++++L  M + GL P+++TY+ ++ 
Sbjct: 605 MFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQ 664

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              +  ++   L L +        P  V +K +I
Sbjct: 665 CFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLI 698



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 113/265 (42%), Gaps = 9/265 (3%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D   +N L+     +G++D A     +M  E H V+PD +T   L K     G +  AR 
Sbjct: 305 DSFSYNILLHGLCVAGSMDEALGFTDDM--EKHGVEPDVVTYNTLAKGFLLLGLMSGAR- 361

Query: 213 VYKMIHKYNIKG-TPEVYTIAINCCS--QTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
             K++ K  ++G  P++ T     C   Q G+ E A  +  +   +G   + +F + L+ 
Sbjct: 362 --KVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLS 419

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G++E A  +  E +   +    I YS L+         Q+A +LYE M+  +  P
Sbjct: 420 CLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFP 479

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
                 A++  L     + +          + L  + + Y+I++    R D +   + L 
Sbjct: 480 HHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLY 539

Query: 390 SQAKEDGVIPNLVMFKCII-GMCSR 413
            +  E G+ P++V F  +I G C R
Sbjct: 540 YKMIERGITPSVVTFNTLINGFCRR 564



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 105/226 (46%)

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
           D ++ ++     V P  ++I  +M      G +D AR  + ++ K  +      Y I ++
Sbjct: 255 DAISFLHDSNKVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNILLH 314

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
                G  + A    DDM K GV PD V  + L       G +  A +++Q+   QG++ 
Sbjct: 315 GLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNP 374

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
            +++Y++L+       N ++AL+L +   S   K  V   N L++ LC   ++ + + + 
Sbjct: 375 DLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLF 434

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
            +M++L L P+ I YSIL+    ++  V+    L  Q +     P+
Sbjct: 435 DEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPH 480



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 109/266 (40%), Gaps = 3/266 (1%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           ++  D V++N +I    +   +  A  +  +M      + P  +T   L+      G + 
Sbjct: 511 DLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIER--GITPSVVTFNTLINGFCRRGDLM 568

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            AR++ ++I    +  +   YT  +N   + G+ +       +M    V+P  V  + LI
Sbjct: 569 EARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLI 628

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                  K+  + ++L+    +G+    ++Y++++      K   KAL+LY  M      
Sbjct: 629 KGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCD 688

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           PT  T   LI ALC    L     ++  ++   +    +TY  ++ A   K  V   L  
Sbjct: 689 PTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGY 748

Query: 389 LSQAKEDGVIPNLVMFKCIIG-MCSR 413
            +Q    G + ++  +  +I  +C R
Sbjct: 749 FNQMLAKGFVISIRDYSAVINRLCKR 774



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 66/335 (19%), Positives = 132/335 (39%), Gaps = 34/335 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLVP---NP 90
           L + G ISE  +  +   R  L++ D V +    +       I EA + ++K++     P
Sbjct: 491 LFKNGNISEARNYFDTWTRMDLME-DVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITP 549

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
           ++ TFN L++      D   A ++L +++  GL      YTTL+    + G +  M    
Sbjct: 550 SVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEM---- 605

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
                                  F  L EM  E + V P H+T   L+K      ++  +
Sbjct: 606 -----------------------FHFLHEM--EANAVVPTHVTYTVLIKGLCRQNKMHES 640

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            ++ + ++   +      Y   I C  +  +   A  +Y+ M      P +V    LI+ 
Sbjct: 641 LQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINA 700

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G ++    ++   +++ I++  ++Y +++ A        KAL  +  M +     +
Sbjct: 701 LCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVIS 760

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           +   +A+I  LC    + +       M S G+ P+
Sbjct: 761 IRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPD 795


>gi|255566203|ref|XP_002524089.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
 gi|223536657|gb|EEF38299.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis]
          Length = 1072

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 161/356 (45%), Gaps = 19/356 (5%)

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMF 147
            T  T+NM M +    KD +    +   ++  G       +  +I    ++G  +     F
Sbjct: 718  TKETYNMAMKISGREKDFKHMRSLFYEMRRKGCLITPDTWAIMIMQYGRTGLTEISLKTF 777

Query: 148  ENVKPDRVVFN------ALITACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
              +K +  + N       LI+ CG+ G  VD A  +  EM    +   PD   +G  +  
Sbjct: 778  TEMKDNGYIPNDSTYKYLLISLCGKKGRKVDEAIKIFHEMIRTRYI--PDREVVGTYLSC 835

Query: 201  CANAGQVDRAREVYKMIHK--YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
               AG++  AR+    + +  Y I   P  Y++ I    ++G  E A S+ D++  +   
Sbjct: 836  LCEAGRLSEARKSTDSLCRIGYTI---PLSYSLYIRALCRSGRLEEALSLLDEVGTERST 892

Query: 259  PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
             D+     L+      G+ E A   ++  K  GI+  +  Y+SL+      K  +KA+++
Sbjct: 893  LDQYTYGTLVHGLLRKGRQEEALAKIESMKEAGINPTVHVYTSLIVHFFKEKQIEKAMQI 952

Query: 319  YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
            +E M+    +PTV T +ALI    + ++      VL+ +K  G  P+  TYS+ +    +
Sbjct: 953  FEKMQQDGCEPTVVTYSALIRGYMNMERADDAWSVLNHLKLKGPKPDFKTYSMFISCLCK 1012

Query: 379  KDDVEVGLMLLSQAKEDGVIPNLVMFKCI-IGM-CSRRYEKARTLNEHVLSFNSGR 432
                E  L LLS+  EDG++P+ + F+ +  G+ C  + + ART+ +  L+  S R
Sbjct: 1013 AGKSEEALQLLSRMLEDGIVPSTINFRTVFFGLNCEGKNDLARTVMQQKLALKSKR 1068



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 71/350 (20%), Positives = 155/350 (44%), Gaps = 16/350 (4%)

Query: 46  DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLMSV 101
           DL+E+ME+       K +        K+ K I +A  FF+ +      P    + M++  
Sbjct: 231 DLVEEMEKNSCEKDIKTWSILISQFGKA-KLIGKALLFFEKMKTSGCEPDEKIYKMMVHS 289

Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK--------PD 153
             ++   E A    + + +  ++ D  LY  L+ + AKSG V A+             P+
Sbjct: 290 LCNAGKGEVALAFYKEMVQKDMRLDLSLYKILLISMAKSGDVGAVHLVANDMSRLSQIPE 349

Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
             V   ++ +   +G +  A +++ ++  +   +D +++  G L+K      ++  A E+
Sbjct: 350 HDVNVCILKSFCVAGKIREALELIRDLKNKDILIDYEYL--GTLVKGLCRGDRITDAVEI 407

Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
            +++ K N+    ++Y I IN   +  D   A  ++  M + G+ P     + L+    +
Sbjct: 408 VEIMKKRNLID-AKIYGIIINGYLRKKDLSKAIELFQRMKESGIQPITSTYTELMQCLFN 466

Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
             + +  FE+  E   +GI V  ++  +++ A     +  +A E++  MK     PT  +
Sbjct: 467 LNQYDKGFELFNEMLERGIRVDSVATMAIVAAHVRQNHISEAWEVFNTMKDKGANPTWKS 526

Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
            +  I  LC   +  + ++VL  M++  +  N   +++ +   E+K +V+
Sbjct: 527 YSIFIKELCRVSRTDEILKVLYKMQASKIFINNDIFNLAIAFMEKKGEVD 576



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/342 (20%), Positives = 143/342 (41%), Gaps = 16/342 (4%)

Query: 80  AFRFFKLVPN-----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
           AFRFF  V        T  T+  ++ +   +K+ +    ++  +++   + D K ++ LI
Sbjct: 193 AFRFFSWVKMRDGFCHTTKTYYTMLYIAGEAKEFKVVDDLVEEMEKNSCEKDIKTWSILI 252

Query: 135 TTCAKS---GKVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
           +   K+   GK    FE +K     PD  ++  ++ +   +G  + A     EM  +   
Sbjct: 253 SQFGKAKLIGKALLFFEKMKTSGCEPDEKIYKMMVHSLCNAGKGEVALAFYKEMVQKDMR 312

Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
           +D     I  L+ + A +G V     V   + + +     +V    +      G    A 
Sbjct: 313 LDLSLYKI--LLISMAKSGDVGAVHLVANDMSRLSQIPEHDVNVCILKSFCVAGKIREAL 370

Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
            +  D+  K ++ D  +L  L+       ++  A EI++  K + +    I Y  ++   
Sbjct: 371 ELIRDLKNKDILIDYEYLGTLVKGLCRGDRITDAVEIVEIMKKRNLIDAKI-YGIIINGY 429

Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
              K+  KA+EL++ MK   ++P  ST   L+  L + +Q  K  E+ ++M   G+  ++
Sbjct: 430 LRKKDLSKAIELFQRMKESGIQPITSTYTELMQCLFNLNQYDKGFELFNEMLERGIRVDS 489

Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           +    ++ A  R++ +     + +  K+ G  P    +   I
Sbjct: 490 VATMAIVAAHVRQNHISEAWEVFNTMKDKGANPTWKSYSIFI 531



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 13/157 (8%)

Query: 35   LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
            L+R+GR  E +  +E M+  G+     VY +   +  K +K I++A + F+ +      P
Sbjct: 905  LLRKGRQEEALAKIESMKEAGINPTVHVYTSLIVHFFK-EKQIEKAMQIFEKMQQDGCEP 963

Query: 91   TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------V 143
            T+ T++ L+    + + ++ A+ VL  ++  G K D K Y+  I+   K+GK       +
Sbjct: 964  TVVTYSALIRGYMNMERADDAWSVLNHLKLKGPKPDFKTYSMFISCLCKAGKSEEALQLL 1023

Query: 144  DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAE 179
              M E+ + P  + F  +       G  D A  V+ +
Sbjct: 1024 SRMLEDGIVPSTINFRTVFFGLNCEGKNDLARTVMQQ 1060


>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
          Length = 649

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 98/435 (22%), Positives = 182/435 (41%), Gaps = 28/435 (6%)

Query: 26  SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
           + Q+ S+    + G +   + LL+ M R G    D V ++   N    Q  + +A     
Sbjct: 229 ATQIRSF---CQNGLLDRAVQLLDQMPRYGCTP-DVVIYSTLINGFSEQGHVDQALDLLN 284

Query: 86  -LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
            ++  P    +N  +     ++  E   +++  +   G   +   ++ LI++  ++  VD
Sbjct: 285 TMLCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVD 344

Query: 145 AMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
           +  E          +PD V +N +I +  + G VD A  +L  M  +     PD +   A
Sbjct: 345 SAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSMVCK-----PDALGFNA 399

Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
           ++K    A +   A E+   + + +       + I I+   Q G   +A  V++ M +  
Sbjct: 400 VLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYR 459

Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
             PD V  S+L++     G VE A ++    ++      I SY++++     A  W+ A 
Sbjct: 460 CTPDIVTYSSLLNGFSEQGLVEVAIQLF---RSMPCKPDIFSYNAVLKGLCRAARWEDAG 516

Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
           EL   M      P   T N LI +LC    + + +EVL  M + G  P+  TY+ L+   
Sbjct: 517 ELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGF 576

Query: 377 ERKDDVEVGLMLLS--QAKEDGVIPNLVMFKCIIGMC-SRRYEKARTLNEHVLSFNSGRP 433
             +  ++  L LLS    K D +  N      + G+C + R++ A  L   +L       
Sbjct: 577 SEQGRLDDALKLLSTMSCKPDAISYN----STLKGLCRAERWQDAEELVAEMLRNKCTPN 632

Query: 434 QIENKWTSLALMVYR 448
           ++  K+ +  LM  R
Sbjct: 633 EVTFKYANHLLMPNR 647



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 124/285 (43%), Gaps = 17/285 (5%)

Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
           V + ALI    +SG +D A  ++A M     PV PD  T   ++K    A + + A E+ 
Sbjct: 159 VTYTALIDGYCRSGRLDDALRLIASM-----PVAPDTYTYNTVLKGLCIAKKWEEAEELM 213

Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
             + +         +   I    Q G  + A  + D M + G  PD V  S LI+     
Sbjct: 214 AEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQ 273

Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
           G V+ A ++L     +  +V    Y++ +     A+ W+   EL   M      P  +T 
Sbjct: 274 GHVDQALDLLNTMLCKPNTV---CYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATF 330

Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ--A 392
           + LI++LC  + +   +EVL  M+  G  P+T+ Y+I++ +   +  V+  L LL+    
Sbjct: 331 SMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLLNSMVC 390

Query: 393 KEDGVIPNLVMFKCIIGMC-SRRYEKARTLNEHVLSFNSGRPQIE 436
           K D +  N V+     G C + R+  A  L   +  F    P IE
Sbjct: 391 KPDALGFNAVL----KGFCRAERWHDASELIAQM--FRDDCPLIE 429


>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 177/394 (44%), Gaps = 19/394 (4%)

Query: 31  SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAIKEAFRF 83
           SYN L+      G + E +   +DME+ G+ + D V +   A+ F +       ++  + 
Sbjct: 308 SYNILLHGLCVAGSMDEALGFTDDMEKHGV-EPDVVTYNTLAKGFLLLGLMSGARKVVQK 366

Query: 84  FKLVP-NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
             L   NP L T+  L+       + E A ++ +     G K +   Y  L++   K G+
Sbjct: 367 MLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGR 426

Query: 143 VD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
           ++    +F+      ++PD +V++ LI    + G V RA+ +  +M  +     P H   
Sbjct: 427 IEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKF--PHHFAQ 484

Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254
            A++      G +  AR  +    + ++     +Y I I+   +      A  +Y  M +
Sbjct: 485 RAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIE 544

Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
           +G+ P  V  + LI+     G +  A ++L+  + +G+   +++Y++LM A     N Q+
Sbjct: 545 RGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQE 604

Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
                  M++  + PT  T   LI  LC  +++ +++++L  M + GL P+++TY+ ++ 
Sbjct: 605 MFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQ 664

Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
              +  ++   L L +        P  V +K +I
Sbjct: 665 CFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLI 698



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 113/265 (42%), Gaps = 9/265 (3%)

Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
           D   +N L+     +G++D A     +M  E H V+PD +T   L K     G +  AR 
Sbjct: 305 DSFSYNILLHGLCVAGSMDEALGFTDDM--EKHGVEPDVVTYNTLAKGFLLLGLMSGAR- 361

Query: 213 VYKMIHKYNIKG-TPEVYTIAINCCS--QTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
             K++ K  ++G  P++ T     C   Q G+ E A  +  +   +G   + +F + L+ 
Sbjct: 362 --KVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLS 419

Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
                G++E A  +  E +   +    I YS L+         Q+A +LYE M+  +  P
Sbjct: 420 CLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFP 479

Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
                 A++  L     + +          + L  + + Y+I++    R D +   + L 
Sbjct: 480 HHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLY 539

Query: 390 SQAKEDGVIPNLVMFKCII-GMCSR 413
            +  E G+ P++V F  +I G C R
Sbjct: 540 YKMIERGITPSVVTFNTLINGFCRR 564



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 105/226 (46%)

Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
           D ++ ++     V P  ++I  +M      G +D AR  + ++ K  +      Y I ++
Sbjct: 255 DAISFLHDSNKVVGPSIVSINTIMSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNILLH 314

Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
                G  + A    DDM K GV PD V  + L       G +  A +++Q+   QG++ 
Sbjct: 315 GLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNP 374

Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
            +++Y++L+       N ++AL+L +   S   K  V   N L++ LC   ++ + + + 
Sbjct: 375 DLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLF 434

Query: 355 SDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
            +M++L L P+ I YSIL+    ++  V+    L  Q +     P+
Sbjct: 435 DEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPH 480



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/266 (20%), Positives = 108/266 (40%), Gaps = 3/266 (1%)

Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
           ++  D V++N +I    +   +  A  +  +M      + P  +T   L+      G + 
Sbjct: 511 DLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIER--GITPSVVTFNTLINGFCRRGDLM 568

Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
            AR++ ++I    +  +   YT  +N   + G+ +       +M    V+P  V  + LI
Sbjct: 569 EARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLI 628

Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
                  K+  + ++L+    +G+    ++Y++++      K   KAL+LY  M      
Sbjct: 629 KGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCD 688

Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
           PT  T   LI ALC    L     ++  ++   +     TY  ++ A   K  V   L  
Sbjct: 689 PTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGY 748

Query: 389 LSQAKEDGVIPNLVMFKCIIG-MCSR 413
            +Q    G + ++  +  +I  +C R
Sbjct: 749 FNQMLAKGFVISIRDYSAVINRLCKR 774



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/335 (19%), Positives = 131/335 (39%), Gaps = 34/335 (10%)

Query: 35  LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLVP---NP 90
           L + G ISE  +  +   R  L++ D V +    +       I EA + ++K++     P
Sbjct: 491 LFKNGNISEARNYFDTWTRMDLME-DVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITP 549

Query: 91  TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
           ++ TFN L++      D   A ++L +++  GL      YTTL+    + G +  M    
Sbjct: 550 SVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEM---- 605

Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
                                  F  L EM  E + V P H+T   L+K      ++  +
Sbjct: 606 -----------------------FHFLHEM--EANAVVPTHVTYTVLIKGLCRQNKMHES 640

Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
            ++ + ++   +      Y   I C  +  +   A  +Y+ M      P +V    LI+ 
Sbjct: 641 LQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINA 700

Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
               G ++    ++   +++ I++   +Y +++ A        KAL  +  M +     +
Sbjct: 701 LCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVIS 760

Query: 331 VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
           +   +A+I  LC    + +       M S G+ P+
Sbjct: 761 IRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPD 795


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 165/384 (42%), Gaps = 43/384 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
           N L ++G++ +  ++L+ +   GL+  + +Y+      C+                    
Sbjct: 250 NGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIG------------------ 291

Query: 93  STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVK- 151
                         D + A   +  ++  GL+ +C  + ++I    +   +D   E VK 
Sbjct: 292 --------------DMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKK 337

Query: 152 -------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
                  P    +N LI   G+     R F +L EM  E +   P+ I+ G+L+      
Sbjct: 338 MVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEM--EENGEKPNVISYGSLINCLCKD 395

Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
           G++  A  V + +    +     +Y + I+     G    A   +D+M+K G+    V  
Sbjct: 396 GKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTY 455

Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
           ++LI      GK++ A E+     + G    +I+Y+SL+   SNA N QK LELYE MK 
Sbjct: 456 NSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKK 515

Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV 384
           + LKPT++T + LI+  C  + +     + ++M  + L P+ + Y+ ++   +    V+ 
Sbjct: 516 LGLKPTINTFHPLISG-CSKEGIKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQK 574

Query: 385 GLMLLSQAKEDGVIPNLVMFKCII 408
              L  +  + GV P+   +  +I
Sbjct: 575 AFSLQKEMVDMGVRPDNKTYNSLI 598



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 182/395 (46%), Gaps = 27/395 (6%)

Query: 36  IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF------KLVPN 89
           ++ G +   ++L E M+R+ ++    VY+     +CK +K I++A + F       LVPN
Sbjct: 77  VKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCK-EKRIRDAEKLFGEMSVRNLVPN 135

Query: 90  PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM 146
               TFN L+     + + + A  +   +++  ++     + +L++   K+ +++    M
Sbjct: 136 RV--TFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCM 193

Query: 147 FENVK-----PD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
              +K     PD     ++F+ L+ +   +GA   A D+  E  A    V  D+ T   L
Sbjct: 194 LNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGA---ALDLYRE--AIGKGVKIDNYTCSIL 248

Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
           +      G+V++A EV K + ++ +     +Y   +N   Q GD + A    + M  +G+
Sbjct: 249 LNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGL 308

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
            P+ +  +++ID       ++ A E +++   +GI+  + +Y+ L+        + +  +
Sbjct: 309 RPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQ 368

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
           + E M+    KP V +  +LI  LC   ++ +   VL DM   G+ PN   Y++L+    
Sbjct: 369 ILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSC 428

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
               +   L    +  ++G+   +V +  +I G+C
Sbjct: 429 TVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLC 463



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 168/383 (43%), Gaps = 28/383 (7%)

Query: 39  GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTF 95
           G +   I  +E ME +GL      +++     C+ Q   K      K+V     P++ T+
Sbjct: 291 GDMDRAILTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETY 350

Query: 96  NMLMS----VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-------- 143
           N+L+     +C  S+     FQ+L  ++E G K +   Y +LI    K GK+        
Sbjct: 351 NILIDGYGRLCVFSR----CFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLR 406

Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
           D +   V P+  ++N LI      G +  A     EM+   + +    +T  +L+K    
Sbjct: 407 DMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSK--NGIGATIVTYNSLIKGLCK 464

Query: 204 AGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
            G++  A E++ +I   +    P+V  Y   I+  S  G+ +    +Y+ M K G+ P  
Sbjct: 465 MGKLKEAEEMFFLIT--STGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTI 522

Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
                LI      G ++    +  E     +S   + Y++++       + QKA  L + 
Sbjct: 523 NTFHPLISGCSKEG-IKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKE 581

Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CERKD 380
           M  + ++P   T N+LI       +L +T +++ DMK+ GL P   TYS+L+   C+ K 
Sbjct: 582 MVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLK- 640

Query: 381 DVEVGLMLLSQAKEDGVIPNLVM 403
           D     +   +  E+G +PN+ +
Sbjct: 641 DFNGAYVWYREMLENGFLPNVCI 663



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 150/355 (42%), Gaps = 22/355 (6%)

Query: 25  VSEQLHSYNRLIR-QGRI---SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
           ++  + +YN LI   GR+   S C  +LE+ME  G       Y +    +CK  K ++  
Sbjct: 343 IAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAE 402

Query: 81  FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
                +V     P  + +NML+    +      A +    + + G+ A    Y +LI   
Sbjct: 403 MVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGL 462

Query: 138 AKSGKV---DAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
            K GK+   + MF  +      PD + +N+LI+    +G   +  ++   M      + P
Sbjct: 463 CKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKK--LGLKP 520

Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
              T   L+  C+  G +     ++  + + N+     VY   I+C  +TG  + A S+ 
Sbjct: 521 TINTFHPLISGCSKEG-IKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQ 579

Query: 250 DDMTKKGVIPDEVFLSALIDFAGH--AGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
            +M   GV PD    ++LI   GH   GK+    +++ + K +G+     +YS L+    
Sbjct: 580 KEMVDMGVRPDNKTYNSLI--LGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHC 637

Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
           + K++  A   Y  M      P V   N L T L    +L +   + S+M + G+
Sbjct: 638 DLKDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRLQEAQSICSEMIANGM 692



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 150/323 (46%), Gaps = 30/323 (9%)

Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
           ++ CS++        +YD M ++G +P   ++  +++    + K +   ++ +E    G 
Sbjct: 3   LSVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGF 62

Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
               + Y   M A     + + A+EL+E MK  K+ P V   N LI  LC   ++    +
Sbjct: 63  RPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAEK 122

Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
           +  +M    L PN +T++ L+    +  +V+V + L  + K++ V P+++ F  ++ G+C
Sbjct: 123 LFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLC 182

Query: 412 -SRRYEKAR-TLNEHVLSFNSGRPQ------------IENKWTSLALMVYREAIVAGTIP 457
            +RR E+AR  LNE  +  N   P               +     AL +YREAI  G   
Sbjct: 183 KARRIEEARCMLNE--IKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKI 240

Query: 458 TVEVVSKVLGCL----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPR 510
                S +L  L    ++    ++ + LVE+  V  + +      ++++G+   G+ D R
Sbjct: 241 DNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYN----TIVNGYCQIGDMD-R 295

Query: 511 AFSLLEEAASFGIVP-CVSFKEI 532
           A   +E+  S G+ P C++F  +
Sbjct: 296 AILTIEQMESRGLRPNCIAFNSV 318



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 153/391 (39%), Gaps = 81/391 (20%)

Query: 97  MLMSVCASSK------------DSEG---AFQVLRLVQEA-------------------- 121
           ML+SVC+ SK              EG   +F  +R++ E+                    
Sbjct: 1   MLLSVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGL 60

Query: 122 GLKADCKLYTTLITTCAKSGKVD---AMFENVK-----PDRVVFNALITACGQSGAVDRA 173
           G + D  +Y   +    K G +     +FE +K     P+  V+N LI    +   +  A
Sbjct: 61  GFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDA 120

Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD------------------------- 208
             +  EM+  V  + P+ +T   L+     AG+VD                         
Sbjct: 121 EKLFGEMS--VRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLL 178

Query: 209 -------RAREVYKMIHKYNIKG-TPE--VYTIAINCCSQTGDWEFAC-SVYDDMTKKGV 257
                  R  E   M+++    G  P+   Y+I  +   ++ D   A   +Y +   KGV
Sbjct: 179 SGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGV 238

Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
             D    S L++     GKVE A E+L+     G+  G + Y++++       +  +A+ 
Sbjct: 239 KIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAIL 298

Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
             E M+S  L+P     N++I   C+   + K  E +  M   G+ P+  TY+IL+    
Sbjct: 299 TIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYG 358

Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
           R         +L + +E+G  PN++ +  +I
Sbjct: 359 RLCVFSRCFQILEEMEENGEKPNVISYGSLI 389



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 96/433 (22%), Positives = 179/433 (41%), Gaps = 35/433 (8%)

Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
           L++ C +S    +  ++   M  E     P    +  ++++   + + D   +++K +  
Sbjct: 2   LLSVCSESKMHSQVSELYDFMRQEGRL--PSFGYVRMIVESLVESKKFDNVLDLFKEMVG 59

Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
              +    VY  A+    + GD + A  +++ M ++ V+P+    + LI       ++  
Sbjct: 60  LGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRD 119

Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
           A ++  E   + +    +++++L+     A     A+ L E MK  K++P++ T N+L++
Sbjct: 120 AEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLS 179

Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD-VEVGLMLLSQAKEDGV- 397
            LC   ++ +   +L+++K  G  P+  TYSI+     + DD     L L  +A   GV 
Sbjct: 180 GLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVK 239

Query: 398 IPNLVMFKCIIGMCSR-RYEKA----RTLNEHVL--------SFNSGRPQIENKWTSLAL 444
           I N      + G+C   + EKA    ++L EH L        +  +G  QI +     A+
Sbjct: 240 IDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGD--MDRAI 297

Query: 445 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
           +   +    G  P     + V+         D  E  V+ +     A        LIDG+
Sbjct: 298 LTIEQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGY 357

Query: 505 GEY--DPRAFSLLEEAASFGIVP-CVSFKEIP--VVVDARKLEIHTAKVYLLTILKGLRH 559
           G      R F +LEE    G  P  +S+  +   +  D + LE              LR 
Sbjct: 358 GRLCVFSRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMV----------LRD 407

Query: 560 RLAAGAKLPNVNI 572
            +  G  LPN NI
Sbjct: 408 MVGRGV-LPNANI 419


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 157/398 (39%), Gaps = 65/398 (16%)

Query: 95  FNMLMSVCASSKDSEGAFQVLRLVQE-AGLKADCKLYTTLITTCAKSGKV-------DAM 146
           FN +++  A  +D  G  ++  L+Q  A ++ D   Y  L+    K+G+V       D M
Sbjct: 139 FNSILAALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGM 198

Query: 147 FE---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
                +++PD V  N ++    +SG V  A   + +  + VH   P+ +T   L+ A   
Sbjct: 199 SRQDLDIRPDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCR 258

Query: 204 AGQVDRAREVYKMIHKYNIKGTPE------------------------------------ 227
            G +  A   Y+++ K   +G P+                                    
Sbjct: 259 VGNISMA---YELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGK 315

Query: 228 ----VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
                Y+  +     T +   A  ++ +   +G  PD +    +I     AG++E A  +
Sbjct: 316 GNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSM 375

Query: 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343
               K  G  +   +Y+ L+      K   +A EL + MK + ++P V T N L++  C 
Sbjct: 376 ASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCK 435

Query: 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403
                   E+L  M   G  P+ IT+  L+    +   ++  L +L    E G+ PN V+
Sbjct: 436 AGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVI 495

Query: 404 FKCIIGMCSRRYE-----------KARTLNEHVLSFNS 430
           +  +I    +R +           K +++  +V +FN+
Sbjct: 496 YNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNA 533



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 86/389 (22%), Positives = 164/389 (42%), Gaps = 46/389 (11%)

Query: 33  NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-----VCKSQKAIKEAFRFFKLV 87
           N L + GR+ + + +L+ M R+   D+D        N     +CKS + ++EA  F +  
Sbjct: 180 NGLCKAGRVGDALRVLDGMSRQ---DLDIRPDVVTLNTVVDGLCKSGR-VQEALAFVEQR 235

Query: 88  PN------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
            +      P   T+N L+       +   A++++  ++  G+  +     T++    ++G
Sbjct: 236 MSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAG 295

Query: 142 KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
           +  A  E  +  R V+       G+  AV                      T   L+ A 
Sbjct: 296 RTGAALEFFREKRTVWPE-----GKGNAV----------------------TYSTLVGAL 328

Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
            +   V  A E++    K +   +P+  +Y   I+  +Q G  E ACS+   M + G   
Sbjct: 329 LHTNNVGMAMELFH--EKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKL 386

Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
           D    + LI       ++  A+E+LQE K  GI   + +Y++L+     A ++    EL 
Sbjct: 387 DTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELL 446

Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
             M     +P+V T   L+   C   ++ + + +L  M   G+ PN + Y+ L+    ++
Sbjct: 447 GKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKR 506

Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
            DV++ + L  + KE  V  N+  F  ++
Sbjct: 507 GDVDLAIELFDEMKEKSVPANVTTFNALL 535



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/233 (20%), Positives = 100/233 (42%), Gaps = 16/233 (6%)

Query: 65  ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
            R  + C    ++KEA   FKL        +N+L++     K    A+++L+ ++E G++
Sbjct: 367 GRLEDACSMASSMKEAG--FKL----DTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIR 420

Query: 125 ADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDV 176
            D   Y TL++   K+G   A+ E          +P  + F  L+    + G +D A  +
Sbjct: 421 PDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRI 480

Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
           L  M+     + P+++    L+      G VD A E++  + + ++      +   +   
Sbjct: 481 LRSMDES--GIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFNALLKGL 538

Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
                 E A  + D M ++   PD V +  L+++    G+ +     +Q+ ++
Sbjct: 539 RDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQQGEH 591


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.135    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,012,104,030
Number of Sequences: 23463169
Number of extensions: 405152959
Number of successful extensions: 1125693
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5854
Number of HSP's successfully gapped in prelim test: 6025
Number of HSP's that attempted gapping in prelim test: 965806
Number of HSP's gapped (non-prelim): 63652
length of query: 670
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 520
effective length of database: 8,839,720,017
effective search space: 4596654408840
effective search space used: 4596654408840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 80 (35.4 bits)