BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005905
(670 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 50/132 (37%), Gaps = 9/132 (6%)
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---------N 311
E L +D G V A + EA+ G+ + Y+ L+ CS A+
Sbjct: 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85
Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
+ ++++ M K+ P +T D +++ MK+ G+ P +Y
Sbjct: 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145
Query: 372 LLVACERKDDVE 383
L RK D +
Sbjct: 146 ALFGFCRKGDAD 157
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 14/170 (8%)
Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS---------QTGDWEFACSVYDD 251
C+ G V A +Y + ++ + Y + + CS ++
Sbjct: 36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQ 95
Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS-SLMGACSNAK 310
M V+P+E + A E AF+++++ K GI + SY +L G C
Sbjct: 96 MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD 155
Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDM 357
KA E+ HM ++ P + AL+ D D++ KT++ L D+
Sbjct: 156 A-DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 9/132 (6%)
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---------N 311
E L +D G V A + EA+ G+ + Y+ L+ CS A+
Sbjct: 26 EALLKQKLDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85
Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
+ ++++ K+ P +T D + + K+ G+ P +Y
Sbjct: 86 LSRGFDIFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGP 145
Query: 372 LLVACERKDDVE 383
L RK D +
Sbjct: 146 ALFGFCRKGDAD 157
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS-SLMGACSNAKNWQKA 315
V+P+E + A E AF+ +++ K GI + SY +L G C KA
Sbjct: 101 VVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDA-DKA 159
Query: 316 LELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVLSDM 357
E+ H ++ P + AL+ D D++ KT++ L D+
Sbjct: 160 YEVDAHXVESEVVPEEPELAALLKVSXDTKNADKVYKTLQRLRDL 204
>pdb|3EDV|A Chain A, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
pdb|3EDV|B Chain B, Crystal Structure Of Repeats 14-16 Of Beta2-Spectrin
Length = 323
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 67 FFNVCKSQKA----IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
+ C+S++ + FRFF +V + L +++ + A K + + L + G
Sbjct: 204 LLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQG 263
Query: 123 LKADCKLYTTLITTCAKSGK 142
+KA+ TTC + GK
Sbjct: 264 IKAEIDARNDSFTTCIELGK 283
>pdb|3HQY|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HQZ|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
pdb|3HR1|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 380
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 51/206 (24%)
Query: 6 KNMLQFPYPNGKHA-NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL------D 58
KN + PY N KHA AH + L + N L D+ERKGLL D
Sbjct: 103 KNYRRVPYHNWKHAVTVAHCMYAILQNNN------------GLFTDLERKGLLIACLCHD 150
Query: 59 MDKVYHARFFNVCKSQK-----------AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107
+D R F+ QK + E F + V L N+ ++ +S +
Sbjct: 151 LDH----RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYE 206
Query: 108 SEGAFQVLRLVQEAGLKADCKLY---TTLITTCAKSGKVDAMFENVKPDRVVFNALITAC 164
QVL ++++A + D LY + ++G ++ + DRV+ ++TAC
Sbjct: 207 -----QVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLN-LHNQSHRDRVI-GLMMTAC 259
Query: 165 GQSGAVD-------RAFDVLAEMNAE 183
A D+ AE AE
Sbjct: 260 DLCSVTKLWPVTKLTANDIYAEFWAE 285
>pdb|3HQW|A Chain A, Discovery Of Novel Inhibitors Of Pde10a
Length = 376
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 51/206 (24%)
Query: 6 KNMLQFPYPNGKHA-NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL------D 58
KN + PY N KHA AH + L + N L D+ERKGLL D
Sbjct: 99 KNYRRVPYHNWKHAVTVAHCMYAILQNNN------------GLFTDLERKGLLIACLCHD 146
Query: 59 MDKVYHARFFNVCKSQK-----------AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107
+D R F+ QK + E F + V L N+ ++ +S +
Sbjct: 147 LDH----RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYE 202
Query: 108 SEGAFQVLRLVQEAGLKADCKLY---TTLITTCAKSGKVDAMFENVKPDRVVFNALITAC 164
QVL ++++A + D LY + ++G ++ + DRV+ ++TAC
Sbjct: 203 -----QVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLN-LHNQSHRDRVI-GLMMTAC 255
Query: 165 GQSGAVD-------RAFDVLAEMNAE 183
A D+ AE AE
Sbjct: 256 DLCSVTKLWPVTKLTANDIYAEFWAE 281
>pdb|2O8H|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVV|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|2OVY|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat
Phosphodiesterase 10a
pdb|3QPN|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPO|A Chain A, Structure Of Pde10-Inhibitor Complex
pdb|3QPP|A Chain A, Structure Of Pde10-Inhibitor Complex
Length = 362
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 51/206 (24%)
Query: 6 KNMLQFPYPNGKHA-NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL------D 58
KN + PY N KHA AH + L + N L D+ERKGLL D
Sbjct: 85 KNYRRVPYHNWKHAVTVAHCMYAILQNNN------------GLFTDLERKGLLIACLCHD 132
Query: 59 MDKVYHARFFNVCKSQK-----------AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107
+D R F+ QK + E F + V L N+ ++ +S +
Sbjct: 133 LDH----RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYE 188
Query: 108 SEGAFQVLRLVQEAGLKADCKLY---TTLITTCAKSGKVDAMFENVKPDRVVFNALITAC 164
QVL ++++A + D LY + ++G ++ + DRV+ ++TAC
Sbjct: 189 -----QVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLN-LHNQSHRDRVI-GLMMTAC 241
Query: 165 GQSGAVD-------RAFDVLAEMNAE 183
A D+ AE AE
Sbjct: 242 DLCSVTKLWPVTKLTANDIYAEFWAE 267
>pdb|1UG2|A Chain A, Solution Structure Of Mouse Hypothetical Gene
(2610100b20rik) Product Homologous To Myb Dna-Binding
Domain
Length = 95
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 135 TTCAKSGKVDAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
T CA + KV + E V + DRV+ +T C + GA F V+++ PV+
Sbjct: 18 TVCANNSKVSSTGEKVVLWTREADRVI----LTMCQEQGAQPHTFSVISQQLGNKTPVEV 73
Query: 190 DH 191
H
Sbjct: 74 SH 75
>pdb|3GZT|B Chain B, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|F Chain F, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|G Chain G, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|H Chain H, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|I Chain I, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|J Chain J, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|K Chain K, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|L Chain L, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|M Chain M, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|N Chain N, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|O Chain O, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|P Chain P, Vp7 Recoated Rotavirus Dlp
pdb|3GZT|Q Chain Q, Vp7 Recoated Rotavirus Dlp
Length = 255
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 21/95 (22%)
Query: 542 EIHTAKVYLLT-ILKGLRHRL---AAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTT 597
E+ TA+ ++T ++ G+ H+L A + N L P E ++ VGG +DI T
Sbjct: 160 EVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPT 219
Query: 598 QAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQ 632
A R+ +RIN K+W+Q
Sbjct: 220 TAPQT--ERM------------MRIN---WKKWWQ 237
>pdb|3FMG|A Chain A, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer In
Co A Neutralizing Fab
pdb|3IYU|A Chain A, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|F Chain F, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|G Chain G, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|H Chain H, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|I Chain I, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|J Chain J, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|K Chain K, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|L Chain L, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|M Chain M, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|N Chain N, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|O Chain O, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|P Chain P, Atomic Model Of An Infectious Rotavirus Particle
pdb|3IYU|Q Chain Q, Atomic Model Of An Infectious Rotavirus Particle
Length = 276
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 542 EIHTAKVYLLT-ILKGLRHRL---AAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTT 597
E+ TA+ ++T ++ G+ H+L A + N L P E ++ VGG +DI T
Sbjct: 167 EVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPT 226
Query: 598 QA 599
A
Sbjct: 227 TA 228
>pdb|3LXG|A Chain A, Crystal Structure Of Rat Phosphodiesterase 10a In Complex
Wi Web-3
Length = 308
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 51/206 (24%)
Query: 6 KNMLQFPYPNGKHA-NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL------D 58
KN + PY N KHA AH + L + N L D+ERKGLL D
Sbjct: 55 KNYRRVPYHNWKHAVTVAHCMYAILQNNN------------GLFTDLERKGLLIACLCHD 102
Query: 59 MDKVYHARFFNVCKSQK-----------AIKEAFRFFKLVPNPTLSTFNMLMSVCASSKD 107
+D R F+ QK + E F + V L N+ ++ +S +
Sbjct: 103 LDH----RGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVSILQLEGHNIFSTLSSSEYE 158
Query: 108 SEGAFQVLRLVQEAGLKADCKLY---TTLITTCAKSGKVDAMFENVKPDRVVFNALITAC 164
QVL ++++A + D LY + ++G ++ + DRV+ ++TAC
Sbjct: 159 -----QVLEIIRKAIIATDLALYFGNRKQLEEMYQTGSLN-LHNQSHRDRVI-GLMMTAC 211
Query: 165 GQSGAVD-------RAFDVLAEMNAE 183
A D+ AE AE
Sbjct: 212 DLCSVTKLWPVTKLTANDIYAEFWAE 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,056,974
Number of Sequences: 62578
Number of extensions: 765054
Number of successful extensions: 1778
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1766
Number of HSP's gapped (non-prelim): 22
length of query: 670
length of database: 14,973,337
effective HSP length: 105
effective length of query: 565
effective length of database: 8,402,647
effective search space: 4747495555
effective search space used: 4747495555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)