BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005905
(670 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WLC6|PP349_ARATH Pentatricopeptide repeat-containing protein At4g34830, chloroplastic
OS=Arabidopsis thaliana GN=At4g34830/At4g34820 PE=2 SV=2
Length = 1089
Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/711 (62%), Positives = 545/711 (76%), Gaps = 48/711 (6%)
Query: 6 KNMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHA 65
++M QFP N + N E +YNRL+R GRI +CI LLED++++ LLDMDK+YHA
Sbjct: 381 ESMPQFPARNFELHNSNGRSPETSDAYNRLLRDGRIKDCISLLEDLDQRDLLDMDKIYHA 440
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
FF CK Q+A+KEAFRF KL+ NPT+STFNMLMSVCASS+D EGA VLRLVQE+G+ A
Sbjct: 441 SFFKACKKQRAVKEAFRFTKLILNPTMSTFNMLMSVCASSQDIEGARGVLRLVQESGMTA 500
Query: 126 DCKLYTTLITTCAKSGKVDAMFE------------------------------------- 148
DCKLYTTLI++CAKSGKVDAMFE
Sbjct: 501 DCKLYTTLISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQVAKAFGAY 560
Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
NVKPDRVVFNALI+ACGQSGAVDRAFDVLAEM AE HP+DPDHI+IGALMKAC
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHISIGALMKACC 620
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
NAGQV+RA+EVY+MIHKY I+GTPEVYTIA+N CS++GDW+FACS+Y DM +K V PDEV
Sbjct: 621 NAGQVERAKEVYQMIHKYGIRGTPEVYTIAVNSCSKSGDWDFACSIYKDMKEKDVTPDEV 680
Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
F SALID AGHA ++ AF ILQ+AK+QGI +G ISYSSLMGAC NAK+W+KALELYE +
Sbjct: 681 FFSALIDVAGHAKMLDEAFGILQDAKSQGIRLGTISYSSLMGACCNAKDWKKALELYEKI 740
Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
KSIKL+PT+STMNALITALC+G+QLPK ME L ++K+LGL PNTITYS+L++A ERKDD
Sbjct: 741 KSIKLRPTISTMNALITALCEGNQLPKAMEYLDEIKTLGLKPNTITYSMLMLASERKDDF 800
Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSL 442
EV LLSQAK DGV PNL+M +CI +C RR+EKA E V+SF SGRPQIENKWTS+
Sbjct: 801 EVSFKLLSQAKGDGVSPNLIMCRCITSLCKRRFEKACAGGEPVVSFKSGRPQIENKWTSM 860
Query: 443 ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLID 502
ALMVYRE I GT+PT EVVS+VLGCLQLP++A +R+RL+ LG++ + K+ N+ L+D
Sbjct: 861 ALMVYRETISGGTVPTTEVVSQVLGCLQLPHDAALRDRLISTLGINISSQKQHNIFPLVD 920
Query: 503 GFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLA 562
GFGEYDPRAFSLLEEA S G++P VSF +IP+ D +L + A+VYLLTI KGL+HRLA
Sbjct: 921 GFGEYDPRAFSLLEEATSLGVLPSVSFNKIPLFFDTTELPKNVAEVYLLTIFKGLKHRLA 980
Query: 563 AGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRI 622
AGAK+P++N+++ +++ +I + GEKTID+ R Q I ALLRRL +PY S ++RI
Sbjct: 981 AGAKIPHINLIISIQEKEIRTPEGEKTIDLTGRVGQEIGALLRRLDIPYHRKDS--RLRI 1038
Query: 623 NGLALKRWFQPKLASPFS-GKPGELSSLQ--LGKFITHQQRNIRTGNLSLE 670
NG++LK WFQPKL SPFS GKPG+L S Q LG I+ QQR+IR GNLSLE
Sbjct: 1039 NGVSLKNWFQPKLDSPFSGGKPGDLRSSQVPLGNQISRQQRSIRLGNLSLE 1089
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 155/332 (46%), Gaps = 11/332 (3%)
Query: 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------- 142
T+ F+ L+S S E A V ++E GL+ + Y +I C K G
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326
Query: 143 VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
D M N V+PDR+ FN+L+ C + G + A ++ EM ++ D + L+ A
Sbjct: 327 FDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNR--RIEQDVFSYNTLLDAI 384
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
GQ+D A E+ + I Y+ I+ ++ G ++ A +++ +M G+ D
Sbjct: 385 CKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDR 444
Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
V + L+ G+ E A +IL+E + GI +++Y++L+G + + +++
Sbjct: 445 VSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTE 504
Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
MK + P + T + LI G + ME+ + KS GL + + YS L+ A +
Sbjct: 505 MKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGL 564
Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
V + L+ + ++G+ PN+V + II R
Sbjct: 565 VGSAVSLIDEMTKEGISPNVVTYNSIIDAFGR 596
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 109/461 (23%), Positives = 183/461 (39%), Gaps = 78/461 (16%)
Query: 16 GKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK 75
G + N + S + +Y R G E I + M+ GL Y+A K
Sbjct: 262 GGYGNTVYAFSALISAYGR---SGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGM 318
Query: 76 AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
K+ +FF + P TFN L++VC+ E A + + ++ D Y
Sbjct: 319 EFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYN 378
Query: 132 TLITTCAKSGKVDAMFE------------------------------------------- 148
TL+ K G++D FE
Sbjct: 379 TLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYL 438
Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
+ DRV +N L++ + G + A D+L EM A V + D +T AL+ G+ D
Sbjct: 439 GIALDRVSYNTLLSIYTKVGRSEEALDILREM-ASV-GIKKDVVTYNALLGGYGKQGKYD 496
Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
++V+ + + ++ Y+ I+ S+ G ++ A ++ + G+ D V SALI
Sbjct: 497 EVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALI 556
Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK-------------- 314
D G V +A ++ E +GIS +++Y+S++ A + +
Sbjct: 557 DALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSS 616
Query: 315 ----ALELYEHMKSIKLKPTVST-MNALITALCDG--DQLPKTMEVLSDMKSLGLCPNTI 367
AL E + I+L ++T N T C+ +L +EV M L + PN +
Sbjct: 617 SALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVV 676
Query: 368 TYSILLVACERKDDVEVGLMLLSQ-----AKEDGVIPNLVM 403
T+S +L AC R + E MLL + K GV+ L+M
Sbjct: 677 TFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVVHGLLM 717
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 111/226 (49%), Gaps = 3/226 (1%)
Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
A++ G+V A+ +++ T ++ I+ ++G E A SV++ M +
Sbjct: 238 AMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY 297
Query: 256 GVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
G+ P+ V +A+ID G G + + + E + G+ I+++SL+ CS W+
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEA 357
Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
A L++ M + +++ V + N L+ A+C G Q+ E+L+ M + PN ++YS ++
Sbjct: 358 ARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVID 417
Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKA 418
+ + L L + + G+ + V + ++ + ++ R E+A
Sbjct: 418 GFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEA 463
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 119/294 (40%), Gaps = 35/294 (11%)
Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
C G +EFA ++G + SA+I G GKV A I + A G
Sbjct: 212 CDKAVGFYEFAVKRERRKNEQGKLA-----SAMISTLGRYGKVTIAKRIFETAFAGGYGN 266
Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD-QLPKTMEV 353
+ ++S+L+ A + ++A+ ++ MK L+P + T NA+I A G + + +
Sbjct: 267 TVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKF 326
Query: 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
+M+ G+ P+ IT++ LL C R E L + M +R
Sbjct: 327 FDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDE------------------MTNR 368
Query: 414 RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLP 472
R E + V S+N+ I + LA + + V +P V S V+
Sbjct: 369 RIE------QDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKA 422
Query: 473 YNADIRERL---VENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGI 523
D L + LG++ D + + L S+ G + A +L E AS GI
Sbjct: 423 GRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSE-EALDILREMASVGI 475
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 111/408 (27%), Positives = 191/408 (46%), Gaps = 27/408 (6%)
Query: 25 VSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
VS + +YN LIR G I + L + ME KG L Y+ CK +K I +
Sbjct: 201 VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRK-IDDG 259
Query: 81 FRFFKLVP----NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
F+ + + P L ++N++++ +C + E +F VL + G D Y TLI
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSF-VLTEMNRRGYSLDEVTYNTLIK 318
Query: 136 TCAKSGK--------VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
K G + + + P + + +LI + ++G ++RA + L +M V +
Sbjct: 319 GYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQM--RVRGL 376
Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEF 244
P+ T L+ + G ++ E Y+++ + N G +P V Y IN TG E
Sbjct: 377 CPNERTYTTLVDGFSQKGYMN---EAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMED 433
Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
A +V +DM +KG+ PD V S ++ + V+ A + +E +GI I+YSSL+
Sbjct: 434 AIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493
Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
+ ++A +LYE M + L P T ALI A C L K +++ ++M G+ P
Sbjct: 494 GFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLP 553
Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
+ +TYS+L+ ++ LL + + +P+ V + +I CS
Sbjct: 554 DVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCS 601
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 94/412 (22%), Positives = 172/412 (41%), Gaps = 71/412 (17%)
Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ-VDRAREVY 214
VF+ ++ + + +D+A ++ A+ H P ++ A++ A + + + A V+
Sbjct: 136 VFDLVVKSYSRLSLIDKALSIVHL--AQAHGFMPGVLSYNAVLDATIRSKRNISFAENVF 193
Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
K + + + Y I I G+ + A +++D M KG +P+ V + LID
Sbjct: 194 KEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKL 253
Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAK----------------------- 310
K++ F++L+ +G+ +ISY+ ++ G C +
Sbjct: 254 RKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTY 313
Query: 311 -----------NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
N+ +AL ++ M L P+V T +LI ++C + + ME L M+
Sbjct: 314 NTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRV 373
Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
GLCPN TY+ L+ +K + +L + ++G P++V + +I
Sbjct: 374 RGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALI----------- 422
Query: 420 TLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD--- 476
N H ++ ++E+ A+ V + G P V S VL Y+ D
Sbjct: 423 --NGHCVT-----GKMED-----AIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEAL 470
Query: 477 -IRERLVENLGVSADALKRSNLCSLIDGFGEY--DPRAFSLLEEAASFGIVP 525
++ +VE G+ D + S SLI GF E A L EE G+ P
Sbjct: 471 RVKREMVEK-GIKPDTITYS---SLIQGFCEQRRTKEACDLYEEMLRVGLPP 518
Score = 89.7 bits (221), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 90/384 (23%), Positives = 166/384 (43%), Gaps = 36/384 (9%)
Query: 31 SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIK--EAF 81
+YN LI+ +G + + + +M R GL Y + ++CK+ +A++ +
Sbjct: 312 TYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQM 371
Query: 82 RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
R L PN T+ L+ + A++VLR + + G Y LI +G
Sbjct: 372 RVRGLCPNE--RTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTG 429
Query: 142 KVD---AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
K++ A+ E++K PD V ++ +++ +S VD A V EM + + PD IT
Sbjct: 430 KMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEK--GIKPDTIT 487
Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
+L++ + A ++Y+ + + + YT IN GD E A ++++M
Sbjct: 488 YSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMV 547
Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK--- 310
+KGV+PD V S LI+ + A +L + + ++Y +L+ CSN +
Sbjct: 548 EKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKS 607
Query: 311 ------------NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358
+A +++E M KP + N +I C + K + +M
Sbjct: 608 VVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMV 667
Query: 359 SLGLCPNTITYSILLVACERKDDV 382
G +T+T L+ A ++ V
Sbjct: 668 KSGFLLHTVTVIALVKALHKEGKV 691
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 139/332 (41%), Gaps = 25/332 (7%)
Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM--TKKGVIPDEVFLSALIDFAGH 273
++ K+ + T ++ +A + ++T D E+A V+ + T ++
Sbjct: 89 ILTKFKLYKTAQI--LAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSR 146
Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVS 332
++ A I+ A+ G G++SY++++ A +K N A +++ M ++ P V
Sbjct: 147 LSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVF 206
Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
T N LI C + + + M++ G PN +TY+ L+ + ++ G LL
Sbjct: 207 TYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSM 266
Query: 393 KEDGVIPNLVMFKCII-GMC--SRRYEKARTLNEHVLSFNSGRPQIENKWTSL------- 442
G+ PNL+ + +I G+C R E + L E G E + +L
Sbjct: 267 ALKGLEPNLISYNVVINGLCREGRMKEVSFVLTE---MNRRGYSLDEVTYNTLIKGYCKE 323
Query: 443 -----ALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 497
AL+++ E + G P+V + ++ + N + ++ + V
Sbjct: 324 GNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTY 383
Query: 498 CSLIDGFGE--YDPRAFSLLEEAASFGIVPCV 527
+L+DGF + Y A+ +L E G P V
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSV 415
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 110/266 (41%), Gaps = 40/266 (15%)
Query: 31 SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRF 83
+Y+ LI+ Q R E DL E+M R GL + Y A C +KA++
Sbjct: 487 TYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEM 546
Query: 84 FKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK--- 139
+ P + T+++L++ + S+ E +L+L E + +D Y TLI C+
Sbjct: 547 VEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVT-YHTLIENCSNIEF 605
Query: 140 ---------------SGKVDAMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
+ D +FE N KPD +N +I ++G + +A+ + E
Sbjct: 606 KSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKE 665
Query: 180 MNAE---VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
M +H V T+ AL+KA G+V+ V + + E + +
Sbjct: 666 MVKSGFLLHTV-----TVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEIN 720
Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEV 262
+ G+ + V +M K G +P+ +
Sbjct: 721 HREGNMDVVLDVLAEMAKDGFLPNGI 746
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 100/422 (23%), Positives = 192/422 (45%), Gaps = 23/422 (5%)
Query: 18 HANYAHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS 73
H +H ++ + + Y+ I ++G + + L + M GL+ + Y + C+
Sbjct: 336 HEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCR- 394
Query: 74 QKAIKEAFRFF------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
+K +++ + +V +P T+ ++ SS D +GA+ +++ + +G + +
Sbjct: 395 EKNVRQGYELLVEMKKRNIVISPY--TYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNV 452
Query: 128 KLYTTLITTCAKSGKV-DAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
+YTTLI T ++ + DAM + + PD +N+LI ++ +D A L E
Sbjct: 453 VIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVE 512
Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239
M + + P+ T GA + A + A + K + + + + T IN +
Sbjct: 513 MVE--NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK 570
Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
G ACS Y M +G++ D + L++ KV+ A EI +E + +GI+ + SY
Sbjct: 571 GKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSY 630
Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
L+ S N QKA +++ M L P V N L+ C ++ K E+L +M
Sbjct: 631 GVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSV 690
Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKAR 419
GL PN +TY ++ + D+ L + K G++P+ ++ ++ C R + R
Sbjct: 691 KGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVER 750
Query: 420 TL 421
+
Sbjct: 751 AI 752
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 155/339 (45%), Gaps = 24/339 (7%)
Query: 71 CKSQKAIKEAFRFFKLVPNPTLS---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
CK K I+ + +V L T+ +LM+ + + A ++ R ++ G+ D
Sbjct: 568 CKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDV 627
Query: 128 KLYTTLITTCAKSG---KVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179
Y LI +K G K ++F E + P+ +++N L+ +SG +++A ++L E
Sbjct: 628 FSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDE 687
Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE--VYTIAINCC 236
M+ V + P+ +T ++ +G + E +++ + +KG P+ VYT ++ C
Sbjct: 688 MS--VKGLHPNAVTYCTIIDGYCKSGDL---AEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742
Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-- 294
+ D E A +++ KKG +ALI++ GK E E+L +
Sbjct: 743 CRLNDVERAITIFG-TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFG 801
Query: 295 --GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
++Y+ ++ N + A EL+ M++ L PTV T +L+ + +
Sbjct: 802 KPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFP 861
Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
V + + G+ P+ I YS+++ A ++ L+L+ Q
Sbjct: 862 VFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQ 900
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/390 (19%), Positives = 176/390 (45%), Gaps = 20/390 (5%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-KLVPN---P 90
++ R + + +L++M+ +G+ Y++ + K+++ + EA F ++V N P
Sbjct: 462 FLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKR-MDEARSFLVEMVENGLKP 520
Query: 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------- 143
T+ +S + + A + ++ ++E G+ + L T LI K GKV
Sbjct: 521 NAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAY 580
Query: 144 -DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
+ + + D + L+ ++ VD A ++ EM + + PD + G L+ +
Sbjct: 581 RSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGK--GIAPDVFSYGVLINGFS 638
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
G + +A ++ + + + +Y + + ++G+ E A + D+M+ KG+ P+ V
Sbjct: 639 KLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAV 698
Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
+ID +G + AF + E K +G+ Y++L+ C + ++A+ ++
Sbjct: 699 TYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN 758
Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL----CPNTITYSILLVACER 378
K + + NALI + + EVL+ + PN +TY+I++ +
Sbjct: 759 KK-GCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCK 817
Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
+ ++E L Q + ++P ++ + ++
Sbjct: 818 EGNLEAAKELFHQMQNANLMPTVITYTSLL 847
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 98/483 (20%), Positives = 181/483 (37%), Gaps = 74/483 (15%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---- 145
P T+++L+ K E A +L + G+ D Y+ LI K DA
Sbjct: 275 PLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGL 334
Query: 146 MFE------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
+ E N+KP +++ I + G +++A + M A + P +L++
Sbjct: 335 VHEMVSHGINIKP--YMYDCCICVMSKEGVMEKAKALFDGMIA--SGLIPQAQAYASLIE 390
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
V + E+ + K NI +P Y + +GD + A ++ +M G P
Sbjct: 391 GYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRP 450
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
+ V + LI + A +L+E K QGI+ I Y+SL+ S AK +A
Sbjct: 451 NVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFL 510
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI------------ 367
M LKP T A I+ + + + + +M+ G+ PN +
Sbjct: 511 VEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK 570
Query: 368 -----------------------TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
TY++L+ + D V+ + + + G+ P++ +
Sbjct: 571 GKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSY 630
Query: 405 KCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSK 464
+I +G ++ N A ++ E + G P V + +
Sbjct: 631 GVLI---------------------NGFSKLGN--MQKASSIFDEMVEEGLTPNVIIYNM 667
Query: 465 VLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFG 522
+LG + + L++ + V C++IDG+ + AF L +E G
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727
Query: 523 IVP 525
+VP
Sbjct: 728 LVP 730
Score = 43.1 bits (100), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 16/182 (8%)
Query: 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307
VY M ++ V+ D LI AG V+ ++L + + + + +
Sbjct: 208 VYKGMVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATL----------- 256
Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
N AL+L E M L P T + LI LC +L +L +M SLG+ +
Sbjct: 257 ---NVDGALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNH 313
Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHV 425
TYS+L+ + + + L+ + G+ M+ C I + S+ EKA+ L + +
Sbjct: 314 TYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGM 373
Query: 426 LS 427
++
Sbjct: 374 IA 375
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/361 (22%), Positives = 170/361 (47%), Gaps = 22/361 (6%)
Query: 64 HARFF------NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
H++FF + + K FR ++++ N + + ++ +S+ ++ + F
Sbjct: 71 HSQFFTSSSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVP--- 127
Query: 118 VQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVV-----FNALITACGQSGAVDR 172
++C Y + S F N +VV F LI C ++G +++
Sbjct: 128 ------GSNCFNYLLTFVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEK 181
Query: 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232
+FD+L E+ P+ + L+ C G++++A++++ + K + YT+
Sbjct: 182 SFDLLIELTE--FGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVL 239
Query: 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
IN + G + +Y+ M + GV P+ + +++ G+ + AF++ E + +G+
Sbjct: 240 INGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGV 299
Query: 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352
S I++Y++L+G +A ++ + MKS + P + T N LI C +L K +
Sbjct: 300 SCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALS 359
Query: 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
+ D+KS GL P+ +TY+IL+ RK D ++ + +E G+ P+ V + +I +
Sbjct: 360 LCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFA 419
Query: 413 R 413
R
Sbjct: 420 R 420
Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 157/341 (46%), Gaps = 15/341 (4%)
Query: 83 FFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
F ++V N P + FN L++ S + ++ + D + LI C +
Sbjct: 117 FNEMVDNGFVPGSNCFNYLLTFVVGSSSFNQWWSFFN-ENKSKVVLDVYSFGILIKGCCE 175
Query: 140 SGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
+G+++ F+ P+ V++ LI C + G +++A D+ EM + +
Sbjct: 176 AGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGK--LGLVANE 233
Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
T L+ G + E+Y+ + + + Y +N + G + A V+D+
Sbjct: 234 RTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDE 293
Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
M ++GV + V + LI K+ A +++ + K+ GI+ +I+Y++L+
Sbjct: 294 MRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGK 353
Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
KAL L +KS L P++ T N L++ C +++ +M+ G+ P+ +TY+I
Sbjct: 354 LGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTI 413
Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
L+ R D++E + L +E G++P++ + +I G C
Sbjct: 414 LIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFC 454
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/327 (23%), Positives = 143/327 (43%), Gaps = 11/327 (3%)
Query: 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----DAMFEN 149
+F +L+ C + + E +F +L + E G + +YTTLI C K G++ D FE
Sbjct: 165 SFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEM 224
Query: 150 VK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
K + + LI ++G + F++ +M + V P+ T +M G
Sbjct: 225 GKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQED--GVFPNLYTYNCVMNQLCKDG 282
Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
+ A +V+ + + + Y I + A V D M G+ P+ + +
Sbjct: 283 RTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYN 342
Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
LID GK+ A + ++ K++G+S +++Y+ L+ + A ++ + M+
Sbjct: 343 TLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEER 402
Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
+KP+ T LI D + K +++ M+ LGL P+ TYS+L+ K +
Sbjct: 403 GIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEA 462
Query: 386 LMLLSQAKEDGVIPNLVMFKC-IIGMC 411
L E PN V++ I+G C
Sbjct: 463 SRLFKSMVEKNCEPNEVIYNTMILGYC 489
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/397 (20%), Positives = 167/397 (42%), Gaps = 23/397 (5%)
Query: 29 LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
++S+ LI+ G I + DLL ++ G +Y CK + K FF
Sbjct: 163 VYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFF 222
Query: 85 K-----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
+ LV N T+ +L++ + + F++ +QE G+ + Y ++ K
Sbjct: 223 EMGKLGLVANE--RTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCK 280
Query: 140 SGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
G+ F+ V + V +N LI + ++ A V+ +M ++ ++P+
Sbjct: 281 DGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSD--GINPNL 338
Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
IT L+ G++ +A + + + + + Y I ++ + GD A + +
Sbjct: 339 ITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKE 398
Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
M ++G+ P +V + LID + +E A ++ + G+ + +YS L+
Sbjct: 399 MEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQ 458
Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
+A L++ M +P N +I C + +++L +M+ L PN +Y
Sbjct: 459 MNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRY 518
Query: 372 LL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407
++ V C+ + E L+ + + G+ P+ + I
Sbjct: 519 MIEVLCKERKSKEAE-RLVEKMIDSGIDPSTSILSLI 554
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/324 (20%), Positives = 138/324 (42%), Gaps = 17/324 (5%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
N L + G + ++ E M+ G+ Y+ +CK + K+AF+ F + +
Sbjct: 241 NGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRT-KDAFQVFDEMRERGV 299
Query: 93 S----TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
S T+N L+ +C K +E A +V+ ++ G+ + Y TLI GK+
Sbjct: 300 SCNIVTYNTLIGGLCREMKLNE-ANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKAL 358
Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
D + P V +N L++ + G A ++ EM E + P +T L+
Sbjct: 359 SLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEM--EERGIKPSKVTYTILID 416
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
A + +++A ++ + + + Y++ I+ G A ++ M +K P
Sbjct: 417 TFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEP 476
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
+EV + +I G A ++L+E + + ++ + SY ++ + ++A L
Sbjct: 477 NEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLV 536
Query: 320 EHMKSIKLKPTVSTMNALITALCD 343
E M + P+ S ++ + A D
Sbjct: 537 EKMIDSGIDPSTSILSLISRAKND 560
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 126 bits (316), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/396 (25%), Positives = 182/396 (45%), Gaps = 13/396 (3%)
Query: 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83
DV N ++G + +M +G+L Y++ +CK+Q K
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254
Query: 84 FKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
+V N P T+N ++ SS + A L+ ++ G++ D Y+ L+ K+
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314
Query: 141 GK-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
G+ D+M + +KP+ + L+ GA+ +L M + + PDH
Sbjct: 315 GRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR--NGIHPDHY 372
Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
L+ A A G+VD+A V+ + + + Y I ++G E A ++ M
Sbjct: 373 VFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQM 432
Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
+G+ P + ++LI K E A E++ E ++GI + I ++S++ +
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492
Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
++ +L+E M I +KP V T N LI C ++ + M++LS M S+GL PNT+TYS L
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTL 552
Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
+ + +E L+L + + GV P+++ + I+
Sbjct: 553 INGYCKISRMEDALVLFKEMESSGVSPDIITYNIIL 588
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 158/354 (44%), Gaps = 22/354 (6%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-TCAKSGKVDAMFE 148
P L T+ +L+ C + + F L V + G + D +T L+ CA DAM
Sbjct: 85 PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144
Query: 149 NVK--------PDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMK 199
++ P+ +N L+ A ++L M + PD ++ ++
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGT-PEVYT----IAINCCSQTGDWEFACSVYDDMTK 254
G D+A Y H+ +G P+V T IA C +Q D A V + M K
Sbjct: 205 GFFKEGDSDKAYSTY---HEMLDRGILPDVVTYNSIIAALCKAQAMDK--AMEVLNTMVK 259
Query: 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314
GV+PD + ++++ +G+ + A L++ ++ G+ +++YS LM +
Sbjct: 260 NGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCME 319
Query: 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374
A ++++ M LKP ++T L+ L + +L M G+ P+ +SIL+
Sbjct: 320 ARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILIC 379
Query: 375 ACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MC-SRRYEKARTLNEHVL 426
A ++ V+ +++ S+ ++ G+ PN V + +IG +C S R E A E ++
Sbjct: 380 AYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMI 433
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/383 (20%), Positives = 162/383 (42%), Gaps = 15/383 (3%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NP 90
L + GR E + + M ++GL Y ++ A+ E L+ +P
Sbjct: 311 LCKNGRCMEARKIFDSMTKRGLKPEITTY-GTLLQGYATKGALVEMHGLLDLMVRNGIHP 369
Query: 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMF-- 147
F++L+ A + A V +++ GL + Y +I KSG+V DAM
Sbjct: 370 DHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYF 429
Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
E + P +V+N+LI +RA +++ EM + + I +++ +
Sbjct: 430 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLD--RGICLNTIFFNSIIDSHC 487
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
G+V + ++++++ + +K Y IN G + A + M G+ P+ V
Sbjct: 488 KEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTV 547
Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
S LI+ ++E A + +E ++ G+S II+Y+ ++ + A ELY +
Sbjct: 548 TYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRI 607
Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
+ +ST N ++ LC +++ ++ + L T++I++ A +
Sbjct: 608 TESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRN 667
Query: 383 EVGLMLLSQAKEDGVIPNLVMFK 405
+ L +G++PN ++
Sbjct: 668 DEAKDLFVAFSSNGLVPNYWTYR 690
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 9/247 (3%)
Query: 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226
+ AV R ++ +A A+ V PD T G L+ C AG++D + K +
Sbjct: 66 AAAVSR-YNRMARAGAD--EVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDA 122
Query: 227 EVYT-IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
+T + C+ + V MT+ G IP+ + L+ + + A E+L
Sbjct: 123 IAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLH 182
Query: 286 ---EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
+ + G ++SY++++ + KA Y M + P V T N++I ALC
Sbjct: 183 MMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALC 242
Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
+ K MEVL+ M G+ P+ +TY SIL C E + L + + DGV P++
Sbjct: 243 KAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKE-AIGFLKKMRSDGVEPDV 301
Query: 402 VMFKCII 408
V + ++
Sbjct: 302 VTYSLLM 308
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 169/357 (47%), Gaps = 18/357 (5%)
Query: 82 RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
+ KL P++ T N L++ C ++ SE V ++V E G + D +TTL+ +
Sbjct: 125 KMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV-EMGYQPDTVTFTTLVHGLFQH 183
Query: 141 GKVD---AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
K A+ E + +PD V + A+I + G D A ++L +M E ++ D +
Sbjct: 184 NKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKM--EKGKIEADVV 241
Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYD 250
++ + VD A ++ + I+ P+V+T + I+C G W A +
Sbjct: 242 IYSTVIDSLCKYRHVDDALNLFTEMDNKGIR--PDVFTYSSLISCLCNYGRWSDASRLLS 299
Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
DM ++ + P+ V ++LID GK+ A ++ E + I I++Y+SL+
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHD 359
Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
+A +++ M S P V T N LI C ++ ME+ DM GL NT+TY+
Sbjct: 360 RLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYT 419
Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
L+ + D + M+ Q DGV PN++ + ++ G+C + EKA + E++
Sbjct: 420 TLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/403 (22%), Positives = 178/403 (44%), Gaps = 17/403 (4%)
Query: 33 NRLIRQGRISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
N RISE + L++ M G + + H F K+ +A+ R
Sbjct: 143 NGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHG-LFQHNKASEAVALVERMVVKGC 201
Query: 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF- 147
P L T+ +++ + + A +L +++ ++AD +Y+T+I + K VD
Sbjct: 202 QPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALN 261
Query: 148 -------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
+ ++PD +++LI+ G A +L++M ++P+ +T +L+ A
Sbjct: 262 LFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLER--KINPNVVTFNSLIDA 319
Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
A G++ A +++ + + +I Y IN + A ++ M K +PD
Sbjct: 320 FAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 379
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
V + LI+ A KV E+ ++ +G+ ++Y++L+ A + A +++
Sbjct: 380 VVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFK 439
Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
M S + P + T N L+ LC +L K M V ++ + P+ TY+I+ +
Sbjct: 440 QMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAG 499
Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY-EKARTL 421
VE G L GV P+++ + +I G C + E+A TL
Sbjct: 500 KVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTL 542
Score = 99.4 bits (246), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/396 (20%), Positives = 176/396 (44%), Gaps = 15/396 (3%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
L + + SE + L+E M KG Y A +CK + A+ + K
Sbjct: 180 LFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEAD 239
Query: 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--------V 143
+ ++ ++ + + A + + G++ D Y++LI+ G+
Sbjct: 240 VVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLS 299
Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
D + + P+ V FN+LI A + G + A + EM +DP+ +T +L+
Sbjct: 300 DMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR--SIDPNIVTYNSLINGFCM 357
Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
++D A++++ ++ + Y IN + ++ DM+++G++ + V
Sbjct: 358 HDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVT 417
Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHM 322
+ LI A + A + ++ + G+ I++Y++L+ G C N K +KA+ ++E++
Sbjct: 418 YTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGK-LEKAMVVFEYL 476
Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
+ K++P + T N + +C ++ ++ + G+ P+ I Y+ ++ +K
Sbjct: 477 QKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLK 536
Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
E L + KEDG +P+ + +I R +KA
Sbjct: 537 EEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKA 572
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/364 (23%), Positives = 159/364 (43%), Gaps = 21/364 (5%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
N L ++G ++LL ME KG ++ D V ++ + + + +A F + N
Sbjct: 213 NGLCKRGEPDLALNLLNKME-KGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGI 271
Query: 90 -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
P + T++ L+S + A ++L + E + + + +LI AK GK+
Sbjct: 272 RPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEK 331
Query: 144 --DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
D M + ++ P+ V +N+LI +D A + M ++ PD +T L+
Sbjct: 332 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSK--DCLPDVVTYNTLING 389
Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
A +V E+++ + + + G YT I+ Q D + A V+ M GV P+
Sbjct: 390 FCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPN 449
Query: 261 EVFLSALIDFAGHAGKVEAA---FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
+ + L+D GK+E A FE LQ++K + I +Y+ + A + +
Sbjct: 450 IMTYNTLLDGLCKNGKLEKAMVVFEYLQKSK---MEPDIYTYNIMSEGMCKAGKVEDGWD 506
Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
L+ + +KP V N +I+ C + + MK G P++ TY+ L+ A
Sbjct: 507 LFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHL 566
Query: 378 RKDD 381
R D
Sbjct: 567 RDGD 570
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 144/340 (42%), Gaps = 29/340 (8%)
Query: 35 LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPN 89
L GR S+ LL DM ERK ++ + V + + + EA + F + +
Sbjct: 285 LCNYGRWSDASRLLSDMLERK--INPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSID 342
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAM-- 146
P + T+N L++ + A Q+ L+ D Y TLI K+ KV D M
Sbjct: 343 PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMEL 402
Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
F ++ + V + LI Q+ D A V +M ++ V P+ +T L+
Sbjct: 403 FRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSD--GVHPNIMTYNTLLDGL 460
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI---NCCSQ---TGDWEFACSVYDDMTKK 255
G++++A V++ + K ++ P++YT I C W+ CS ++ K
Sbjct: 461 CKNGKLEKAMVVFEYLQKSKME--PDIYTYNIMSEGMCKAGKVEDGWDLFCS----LSLK 514
Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
GV PD + + +I G E A+ + + K G +Y++L+ A + +
Sbjct: 515 GVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAAS 574
Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
EL + M+S + ST + L DG +EVLS
Sbjct: 575 AELIKEMRSCRFAGDASTYGLVTDMLHDGRLDKGFLEVLS 614
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/237 (19%), Positives = 100/237 (42%), Gaps = 12/237 (5%)
Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
A ++ +M K P V S L+ K + ++ + G+S + +Y+ ++
Sbjct: 49 AVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMIN 108
Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
AL + M + P++ T+N+L+ C G+++ + + ++ M +G P
Sbjct: 109 CLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQP 168
Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 413
+T+T++ L+ + + + L+ + G P+LV + +I G+C R
Sbjct: 169 DTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLL 228
Query: 414 -RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
+ EK + + V+ + + AL ++ E G P V S ++ CL
Sbjct: 229 NKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCL 285
Score = 33.5 bits (75), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
+A++L+ M + P++ + L++A+ + + M+ LG+ N TY+I+
Sbjct: 47 DEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIM 106
Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
+ R+ + L +L + + G P++V ++ G C
Sbjct: 107 INCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFC 146
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/416 (23%), Positives = 184/416 (44%), Gaps = 23/416 (5%)
Query: 19 ANYAHDVSEQLHS------YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHAR-- 66
A+Y D ++++H Y ++I + + L+ +ME +G+ +YH
Sbjct: 398 ADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMD 457
Query: 67 -FFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125
+ V +K + R + PT+ T+ L+++ A +V R+++E G+K
Sbjct: 458 GYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKH 517
Query: 126 DCKLYTTLITTCAK---SGKVDAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVL 177
+ K Y+ +I K A+FE++ KPD +++N +I+A G +DRA +
Sbjct: 518 NLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTV 577
Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
EM H P T ++ A +G + R+ EV+ M+ + T + IN
Sbjct: 578 KEMQKLRH--RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLV 635
Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
+ E A + D+MT GV +E + ++ G AFE +N+G+ V I
Sbjct: 636 EKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIF 695
Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
+Y +L+ AC + Q AL + + M + + N LI + + +++ M
Sbjct: 696 TYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQM 755
Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
K G+ P+ TY+ + AC + D+ + + + GV PN+ + +I +R
Sbjct: 756 KKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWAR 811
Score = 102 bits (255), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 80/355 (22%), Positives = 155/355 (43%), Gaps = 15/355 (4%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVP 88
N + G+IS+ +++ M+ +G+ K Y + N K AF F K
Sbjct: 492 NLYTKVGKISKALEVSRVMKEEGVKHNLKTY-SMMINGFVKLKDWANAFAVFEDMVKEGM 550
Query: 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148
P + +N ++S + + A Q ++ +Q+ + + + +I AKSG + E
Sbjct: 551 KPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLE 610
Query: 149 --------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
P FN LI + +++A ++L EM + V + T +M+
Sbjct: 611 VFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMT--LAGVSANEHTYTKIMQG 668
Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
A+ G +A E + + + Y + C ++G + A +V +M+ + + +
Sbjct: 669 YASVGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRN 728
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
+ LID G V A +++Q+ K +G+ I +Y+S + ACS A + +A + E
Sbjct: 729 SFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIE 788
Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
M+++ +KP + T LI K + +MK++G+ P+ Y LL +
Sbjct: 789 EMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTS 843
Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 147/333 (44%), Gaps = 19/333 (5%)
Query: 25 VSEQLHSY----NRLIRQGRISECIDLLEDMERKGLLDMDKVYH---ARFFNVCKSQKAI 77
V L +Y N ++ + + EDM ++G+ +Y+ + F + +AI
Sbjct: 515 VKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAI 574
Query: 78 KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
+ KL PT TF ++ A S D + +V +++ G + LI
Sbjct: 575 QTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGL 634
Query: 138 AKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
+ +++ E V + + ++ G +AF+ + E +D
Sbjct: 635 VEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNE--GLDV 692
Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSV 248
D T AL+KAC +G++ A V K + NI VY I I+ ++ GD WE A +
Sbjct: 693 DIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWE-AADL 751
Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
M K+GV PD ++ I AG + A + ++E + G+ I +Y++L+ +
Sbjct: 752 IQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWAR 811
Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
A +KAL YE MK++ +KP + + L+T+L
Sbjct: 812 ASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSL 844
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/436 (20%), Positives = 167/436 (38%), Gaps = 111/436 (25%)
Query: 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145
PT + L+ A +D + A +R ++E G++ Y+ ++ +K+G +A
Sbjct: 341 TPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADY 400
Query: 146 MFENVKPDRVVFNA-----LITACGQSGAVDRAFDVLAEMNAE--------VHPV----- 187
F+ K NA +I A Q+ ++RA ++ EM E H +
Sbjct: 401 WFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYT 460
Query: 188 --------------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227
P +T G L+ G++ +A EV +++ + +K +
Sbjct: 461 MVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLK 520
Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
Y++ IN + DW A +V++DM K+G+ PD + + +I G ++ A + ++E
Sbjct: 521 TYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEM 580
Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
+ ++ ++ + + + +++LE+++ M+ PTV T N LI L + Q+
Sbjct: 581 QKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQM 640
Query: 348 PKTMEVLSDMKSLGLCPNT-----------------------------------ITYSIL 372
K +E+L +M G+ N TY L
Sbjct: 641 EKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGLDVDIFTYEAL 700
Query: 373 LVAC-----------------------------------ERKDDVEVGLMLLSQAKEDGV 397
L AC R+ DV L+ Q K++GV
Sbjct: 701 LKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV 760
Query: 398 IPNLVMFKCIIGMCSR 413
P++ + I CS+
Sbjct: 761 KPDIHTYTSFISACSK 776
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 105/255 (41%), Gaps = 35/255 (13%)
Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
P G ++K G + RARE ++ + I T +YT I+ + D + A S
Sbjct: 307 PSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSC 366
Query: 249 YDDMTKKGVIPDEVFLSALI---DFAGHA----------------------GKV------ 277
M ++G+ V S ++ AGHA GK+
Sbjct: 367 VRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQ 426
Query: 278 ----EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
E A +++E + +GI I Y ++M + + +K L +++ +K PTV T
Sbjct: 427 TCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVT 486
Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
LI ++ K +EV MK G+ N TYS+++ + D +
Sbjct: 487 YGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMV 546
Query: 394 EDGVIPNLVMFKCII 408
++G+ P+++++ II
Sbjct: 547 KEGMKPDVILYNNII 561
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/255 (19%), Positives = 110/255 (43%), Gaps = 16/255 (6%)
Query: 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288
+ + + + GD A ++ M +G+ P ++LI ++ A +++ K
Sbjct: 312 FGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMK 371
Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
+GI + +++YS ++G S A + + A ++ K I S +I A C +
Sbjct: 372 EEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNME 431
Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
+ ++ +M+ G+ Y ++ D + GL++ + KE G P +V + C+I
Sbjct: 432 RAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLI 491
Query: 409 ------GMCSRRYEKARTLNEHVLSFN--------SGRPQIENKWTSLALMVYREAIVAG 454
G S+ E +R + E + N +G ++++ W + A V+ + + G
Sbjct: 492 NLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKD-WAN-AFAVFEDMVKEG 549
Query: 455 TIPTVEVVSKVLGCL 469
P V + + ++
Sbjct: 550 MKPDVILYNNIISAF 564
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 70/165 (42%), Gaps = 44/165 (26%)
Query: 22 AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
A ++ YN LI R+G + E DL++ M+++G+
Sbjct: 722 ARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGV--------------------- 760
Query: 78 KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
P + T+ +S C+ + D A Q + ++ G+K + K YTTLI
Sbjct: 761 -----------KPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 809
Query: 138 AKSG---KVDAMFEN-----VKPDRVVFNALITACGQSGAVDRAF 174
A++ K + +E +KPD+ V++ L+T+ ++ A+
Sbjct: 810 ARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLLSRASIAEAY 854
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
+N NWQ + +E + KP+ + ++ + + E M++ G+ P +
Sbjct: 289 TNGDNWQAVISAFEKIS----KPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTS 344
Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
Y+ L+ A D++ L + + KE+G+ +LV + I+G S+
Sbjct: 345 RIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSK 391
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/389 (24%), Positives = 176/389 (45%), Gaps = 19/389 (4%)
Query: 22 AHDVSEQLHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK-- 75
A VS L ++N+L+R +G + EC LL+ + ++G+L Y+ +C+ +
Sbjct: 209 ASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELD 268
Query: 76 -AIKEAFRFFKLVPNPTLSTFN-MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
A++ + P P + T+N ++ +C +SK E + ++V E GL+ D Y TL
Sbjct: 269 GAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNE-GLEPDSYTYNTL 327
Query: 134 ITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
I K G V DA+F PD+ + +LI G +RA + E A
Sbjct: 328 IAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNE--ALGK 385
Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
+ P+ I L+K +N G + A ++ + + + + + I +N + G A
Sbjct: 386 GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445
Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
+ M KG PD + LI K+E A EIL + G+ + +Y+SL+
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNG 505
Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
++ +E Y+ M P + T N L+ +LC +L + + +L +MK+ + P+
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPD 565
Query: 366 TITYSILLVACERKDDVEVGLMLLSQAKE 394
+T+ L+ + D++ L + +E
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKMEE 594
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 85/377 (22%), Positives = 160/377 (42%), Gaps = 34/377 (9%)
Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
+ ++I G G + +VL +M V + + +GA MK G+V A V++
Sbjct: 43 YRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGA-MKNYGRKGKVQEAVNVFER 101
Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
+ Y+ + T Y ++ +G ++ A VY M +G+ PD + + +
Sbjct: 102 MDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSR 161
Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
AA +L +QG + +++Y +++G + EL+ M + + +ST N
Sbjct: 162 PHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNK 221
Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
L+ LC + + ++L + G+ PN TY++ + ++ +++ + ++ E G
Sbjct: 222 LLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQG 281
Query: 397 VIPNLVMFKCII-GMC--SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVA 453
P+++ + +I G+C S+ E L + V N G + +L +A
Sbjct: 282 PKPDVITYNNLIYGLCKNSKFQEAEVYLGKMV---NEGLEPDSYTYNTL---------IA 329
Query: 454 GTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGF---GEYDPR 510
G G +QL ER+V + + + SLIDG GE + R
Sbjct: 330 GYCKG--------GMVQLA------ERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETN-R 374
Query: 511 AFSLLEEAASFGIVPCV 527
A +L EA GI P V
Sbjct: 375 ALALFNEALGKGIKPNV 391
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 86/401 (21%), Positives = 161/401 (40%), Gaps = 43/401 (10%)
Query: 17 KHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQK 75
K + H +S +L G+ ++L DM E G ++ VY N + K
Sbjct: 32 KEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGK 91
Query: 76 AIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT 131
++EA F+ + PT+ ++N +MSV S + A +V +++ G+ D +T
Sbjct: 92 -VQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFT 150
Query: 132 TLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
+ + K+ + A R++ N C EMN +
Sbjct: 151 IRMKSFCKTSRPHAAL------RLLNNMSSQGC--------------EMNVVAYCT---- 186
Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSV 248
+G + A E Y++ K G + + + GD + +
Sbjct: 187 -VVGGFYEENFKA-------EGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKL 238
Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACS 307
D + K+GV+P+ + I G+++ A ++ QG +I+Y++L+ G C
Sbjct: 239 LDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCK 298
Query: 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
N+K +Q+A M + L+P T N LI C G + ++ D G P+
Sbjct: 299 NSK-FQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQF 357
Query: 368 TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
TY L+ + + L L ++A G+ PN++++ +I
Sbjct: 358 TYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI 398
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/385 (21%), Positives = 160/385 (41%), Gaps = 30/385 (7%)
Query: 100 SVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAM-------FENVK 151
+V KD A ++ + +E G K Y ++I GK +AM ENV
Sbjct: 12 AVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLVDMRENVG 71
Query: 152 PDRV--VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
+ V+ + G+ G V A +V M + + +P + A+M ++G D+
Sbjct: 72 NHMLEGVYVGAMKNYGRKGKVQEAVNVFERM--DFYDCEPTVFSYNAIMSVLVDSGYFDQ 129
Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCS--QTGDWEFACSVYDDMTKKGVIPDEV-FLSA 266
A +VY + I TP+VY+ I S +T A + ++M+ +G + V + +
Sbjct: 130 AHKVYMRMRDRGI--TPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTV 187
Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326
+ F K E +E+ + G+S+ + +++ L+ + ++ +L + +
Sbjct: 188 VGGFYEENFKAEG-YELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRG 246
Query: 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386
+ P + T N I LC +L + ++ + G P+ ITY+ L+ + +
Sbjct: 247 VLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAE 306
Query: 387 MLLSQAKEDGVIPNLVMFKCII-GMC-------SRRYEKARTLNEHVLSFNSGRPQIEN- 437
+ L + +G+ P+ + +I G C + R N V + R I+
Sbjct: 307 VYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGL 366
Query: 438 ---KWTSLALMVYREAIVAGTIPTV 459
T+ AL ++ EA+ G P V
Sbjct: 367 CHEGETNRALALFNEALGKGIKPNV 391
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 108/270 (40%), Gaps = 51/270 (18%)
Query: 186 PVDPDHITIGALMKACANAGQVD--RAREVYKMIHK-YNIKGTPEVYTIAINCCSQTGDW 242
P+ P H+T A++K Q D +A E++ + K K T Y I G +
Sbjct: 4 PLLPKHVT--AVIKC-----QKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKF 56
Query: 243 EFACSVYDDMTKK--GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
E V DM + + + V++ A+ ++ G GKV+ A + + + SY+
Sbjct: 57 EAMEEVLVDMRENVGNHMLEGVYVGAMKNY-GRKGKVQEAVNVFERMDFYDCEPTVFSYN 115
Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
++M ++ + +A ++Y M+ + P V + + + C + + +L++M S
Sbjct: 116 AIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQ 175
Query: 361 GLCPNTITY------------------------------------SILLVACERKDDVEV 384
G N + Y +L V C +K DV+
Sbjct: 176 GCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLC-KKGDVKE 234
Query: 385 GLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
LL + + GV+PNL + I G+C R
Sbjct: 235 CEKLLDKVIKRGVLPNLFTYNLFIQGLCQR 264
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 123/514 (23%), Positives = 218/514 (42%), Gaps = 43/514 (8%)
Query: 25 VSEQLHSYNRLI---RQGRI-SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
++ ++YN LI ++G + E + E+M+ G DKV + +V KEA
Sbjct: 275 IAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGF-SYDKVTYNALLDVYGKSHRPKEA 333
Query: 81 FRFF-KLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
+ ++V N P++ T+N L+S A + A ++ + E G K D YTTL++
Sbjct: 334 MKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSG 393
Query: 137 CAKSGKVDA---MFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
++GKV++ +FE + KP+ FNA I G G + E+N V +
Sbjct: 394 FERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEIN--VCGLS 451
Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
PD +T L+ G V+K + + E + I+ S+ G +E A +V
Sbjct: 452 PDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTV 511
Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
Y M GV PD + ++ G E + ++L E ++ ++Y SL+ A +N
Sbjct: 512 YRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAYAN 571
Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
K L E + S ++P + L+ D LP+ S++K G P+ T
Sbjct: 572 GKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERGFSPDITT 631
Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR-----------RYEK 417
+ ++ R+ V +L KE G P++ + ++ M SR R
Sbjct: 632 LNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILREIL 691
Query: 418 ARTLNEHVLSFNSG-RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNAD 476
A+ + ++S+N+ N A ++ E +G +P V + +G Y AD
Sbjct: 692 AKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGS----YAAD 747
Query: 477 IRERLVENLGVSADALK------RSNLCSLIDGF 504
E +GV +K ++ S++DG+
Sbjct: 748 --SMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGY 779
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/431 (24%), Positives = 191/431 (44%), Gaps = 59/431 (13%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
L ++GR+S ++ ++ G +D + + + +EA FK + P
Sbjct: 183 LGKEGRVSSAANMFNGLQEDGF-SLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKP 241
Query: 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEA---GLKADCKLYTTLITTCAKSG---KVD 144
TL T+N++++V K ++ LV++ G+ D Y TLIT C + +
Sbjct: 242 TLITYNVILNVFG--KMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAA 299
Query: 145 AMFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
+FE +K D+V +NAL+ G+S A VL EM ++ P +T +L+
Sbjct: 300 QVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEM--VLNGFSPSIVTYNSLIS 357
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
A A G +D A E+ + + K YT ++ + G E A S++++M G P
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKP 417
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG--------------- 304
+ +A I G+ GK +I E G+S I+++++L+
Sbjct: 418 NICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVF 477
Query: 305 --------------------ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344
A S ++++A+ +Y M + P +ST N ++ AL G
Sbjct: 478 KEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARG 537
Query: 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM-LLSQAKEDGVI-PNLV 402
++ +VL++M+ PN +TY LL A + E+GLM L++ GVI P V
Sbjct: 538 GMWEQSEKVLAEMEDGRCKPNELTYCSLLHA--YANGKEIGLMHSLAEEVYSGVIEPRAV 595
Query: 403 MFKCIIGMCSR 413
+ K ++ +CS+
Sbjct: 596 LLKTLVLVCSK 606
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 117/263 (44%), Gaps = 3/263 (1%)
Query: 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRARE 212
D V +I+ G+ G V A ++ + + +D T +L+ A AN+G+ A
Sbjct: 172 DNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYT--SLISAFANSGRYREAVN 229
Query: 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
V+K + + K T Y + +N + G W S+ + M G+ PD + LI
Sbjct: 230 VFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCC 289
Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
+ A ++ +E K G S ++Y++L+ + ++A+++ M P++
Sbjct: 290 KRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSI 349
Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
T N+LI+A L + ME+ + M G P+ TY+ LL ER VE + + +
Sbjct: 350 VTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEE 409
Query: 392 AKEDGVIPNLVMFKCIIGMCSRR 414
+ G PN+ F I M R
Sbjct: 410 MRNAGCKPNICTFNAFIKMYGNR 432
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/388 (21%), Positives = 154/388 (39%), Gaps = 38/388 (9%)
Query: 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDA 145
S +++S+ A + +QE G D YT+LI+ A SG+
Sbjct: 174 SVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKK 233
Query: 146 MFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
M E+ KP + +N ++ G+ G L E + + PD T L+ C
Sbjct: 234 MEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVE-KMKSDGIAPDAYTYNTLITCCKRG 292
Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
A +V++ + Y ++ ++ + A V ++M G P V
Sbjct: 293 SLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTY 352
Query: 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324
++LI G ++ A E+ + +G + +Y++L+ A + A+ ++E M++
Sbjct: 353 NSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRN 412
Query: 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVE 383
KP + T NA I + + + M++ ++ GL P+ +T++ LL V + D E
Sbjct: 413 AGCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSE 472
Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTS 441
V + + K G +P F +I SR +E+A T
Sbjct: 473 VS-GVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMT--------------------- 510
Query: 442 LALMVYREAIVAGTIPTVEVVSKVLGCL 469
VYR + AG P + + VL L
Sbjct: 511 ----VYRRMLDAGVTPDLSTYNTVLAAL 534
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 12/199 (6%)
Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
DW Y M V+ + +I G G+V +A + + G S+ + SY+
Sbjct: 159 DWFMKQKDYQSMLDNSVV------AIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYT 212
Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD-GDQLPKTMEVLSDMKS 359
SL+ A +N+ +++A+ +++ M+ KPT+ T N ++ G K ++ MKS
Sbjct: 213 SLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKS 272
Query: 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSRRYE 416
G+ P+ TY+ L+ C+R + + + K G + V + ++ G R E
Sbjct: 273 DGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKE 332
Query: 417 KARTLNEHVLSFNSGRPQI 435
+ LNE VL N P I
Sbjct: 333 AMKVLNEMVL--NGFSPSI 349
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/354 (18%), Positives = 155/354 (43%), Gaps = 23/354 (6%)
Query: 25 VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARF--FNVCKS-QKAI 77
+S + ++N L+ + G SE + ++M+R G + + ++ ++ C S ++A+
Sbjct: 450 LSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAM 509
Query: 78 KEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
R P LST+N +++ A E + +VL +++ K + Y +L+
Sbjct: 510 TVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCSLLHAY 569
Query: 138 AKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAV---DRAFDVLAEMNAEVHP 186
A ++ M ++P V+ L+ C + + +RAF L E
Sbjct: 570 ANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAFSELKERG----- 624
Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
PD T+ +++ V +A V + + + Y + S++ D+ +
Sbjct: 625 FSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSE 684
Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
+ ++ KG+ PD + + +I ++ A I E +N GI +I+Y++ +G+
Sbjct: 685 EILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSY 744
Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
+ +++A+ + +M +P +T N+++ C ++ + + D+++L
Sbjct: 745 AADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLRNL 798
Score = 40.4 bits (93), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 92/234 (39%), Gaps = 37/234 (15%)
Query: 13 YPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK 72
Y NGK H ++E+++S G+++ V VC
Sbjct: 569 YANGKEIGLMHSLAEEVYS-----------------------GVIEPRAVLLKTLVLVCS 605
Query: 73 SQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
+ EA R F + +P ++T N ++S+ + A VL ++E G
Sbjct: 606 KCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPSMA 665
Query: 129 LYTTLITTCAKS---GKVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
Y +L+ ++S GK + + + +KPD + +N +I A ++ + A + +EM
Sbjct: 666 TYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEM 725
Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
+ PD IT + + A + A V + + K+ + Y ++
Sbjct: 726 RNS--GIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVD 777
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/402 (24%), Positives = 175/402 (43%), Gaps = 15/402 (3%)
Query: 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPTLS 93
+ + I L E M+ G+ Y C+ + A+ + KL P +
Sbjct: 93 KMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIV 152
Query: 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAM 146
T + L++ SK A ++ + G + + + TLI K +D M
Sbjct: 153 TLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRM 212
Query: 147 F-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
+ +PD V + ++ + G D AF++L +M E ++P + ++
Sbjct: 213 VAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM--EQGKLEPGVLIYNTIIDGLCKYK 270
Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
+D A ++K + I+ Y+ I+C G W A + DM ++ + PD S
Sbjct: 271 HMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFS 330
Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
ALID GK+ A ++ E + I I++YSSL+ +A +++E M S
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSK 390
Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
P V T N LI C ++ + MEV +M GL NT+TY+IL+ + D ++
Sbjct: 391 HCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMA 450
Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
+ + DGV PN++ + ++ G+C + EKA + E++
Sbjct: 451 QEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 95/409 (23%), Positives = 187/409 (45%), Gaps = 52/409 (12%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RISE + L++ M G + + + H F + K+ +A+ R P L T+
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLH-NKASEAMALIDRMVAKGCQPDLVTY 224
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF-------- 147
++++ D++ AF +L +++ L+ +Y T+I K +D
Sbjct: 225 GVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET 284
Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
+ ++P+ V +++LI+ G A +L++M ++PD T AL+ A G++
Sbjct: 285 KGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIE--RKINPDVFTFSALIDAFVKEGKL 342
Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGD-----WEFACS------------- 247
A ++Y + K +I + Y+ IN C D +EF S
Sbjct: 343 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402
Query: 248 ---------------VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292
V+ +M+++G++ + V + LI AG + A EI +E + G+
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462
Query: 293 SVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
I++Y++L+ G C N K +KA+ ++E+++ K++PT+ T N +I +C ++
Sbjct: 463 PPNIMTYNTLLDGLCKNGK-LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGW 521
Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
++ ++ G+ P+ + Y+ ++ RK E L + KEDG +PN
Sbjct: 522 DLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPN 570
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 143/334 (42%), Gaps = 17/334 (5%)
Query: 35 LIRQGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPN 89
L GR S+ LL DM ERK ++ D + + + + EA + + K +
Sbjct: 301 LCNYGRWSDASRLLSDMIERK--INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 358
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
P++ T++ L++ + A Q+ + D Y TLI K +V+ E
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEV 418
Query: 150 VKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
+ + V +N LI Q+G D A ++ EM ++ P P+ +T L+
Sbjct: 419 FREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP--PNIMTYNTLLDGL 476
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
G++++A V++ + + ++ T Y I I + G E ++ +++ KGV PD
Sbjct: 477 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDV 536
Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
V + +I G E A + +E K G Y++L+ A + + + EL +
Sbjct: 537 VAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKE 596
Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
M+S ST+ + L DG +++LS
Sbjct: 597 MRSCGFAGDASTIGLVTNMLHDGRLDKSFLDMLS 630
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/357 (20%), Positives = 153/357 (42%), Gaps = 19/357 (5%)
Query: 32 YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
YN +I + + + ++L ++ME KG+ Y + +C + + ++
Sbjct: 259 YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMI 318
Query: 88 P---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
NP + TF+ L+ A ++ + + + Y++LI ++D
Sbjct: 319 ERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLD 378
Query: 145 ---AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
MFE + PD V +N LI + V+ +V EM+ + + +T
Sbjct: 379 EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQ--RGLVGNTVTYNI 436
Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
L++ AG D A+E++K + + Y ++ + G E A V++ + +
Sbjct: 437 LIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK 496
Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
+ P + +I+ AGKVE +++ +G+ +++Y++++ + ++A
Sbjct: 497 MEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEAD 556
Query: 317 ELYEHMKSIKLKPTVSTMNALITA-LCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
L++ MK P N LI A L DGD+ + E++ +M+S G + T ++
Sbjct: 557 ALFKEMKEDGTLPNSGCYNTLIRARLRDGDR-EASAELIKEMRSCGFAGDASTIGLV 612
Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 115/272 (42%), Gaps = 13/272 (4%)
Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
+D A + EM + P P I L+ A A + D + + + I Y
Sbjct: 62 LDDAVALFGEM-VKSRPF-PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTY 119
Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
+I INC + A +V M K G P+ V LS+L++ H+ ++ A ++ +
Sbjct: 120 SILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFV 179
Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
G +++++L+ +A+ L + M + +P + T ++ LC
Sbjct: 180 TGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL 239
Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
+L+ M+ L P + Y+ ++ + ++ L L + + G+ PN+V + +I
Sbjct: 240 AFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLIS 299
Query: 410 -MCSR-RYEKA---------RTLNEHVLSFNS 430
+C+ R+ A R +N V +F++
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPDVFTFSA 331
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 102/238 (42%), Gaps = 14/238 (5%)
Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
A +++ +M K P + S L+ K + + ++ +N GI +YS L+
Sbjct: 65 AVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILIN 124
Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
AL + M + +P + T+++L+ C ++ + + ++ M G P
Sbjct: 125 CFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQP 184
Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 413
NT+T++ L+ + + L+ + G P+LV + ++ G+C R
Sbjct: 185 NTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLL 244
Query: 414 -RYEKARTLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
+ E+ + L VL +N+ + + K AL +++E G P V S ++ CL
Sbjct: 245 NKMEQGK-LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/389 (24%), Positives = 179/389 (46%), Gaps = 17/389 (4%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92
N L +GR+SE + L++ M G + Y +CKS + A F+ + +
Sbjct: 183 NGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNS-ALALDLFRKMEERNI 241
Query: 93 STFNMLMSVCASSKDSEGAFQ-VLRLVQE---AGLKADCKLYTTLITTCAKSGKVD---- 144
+ S+ S +G+F L L E G+KAD Y++LI GK D
Sbjct: 242 KASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAK 301
Query: 145 ----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
+ N+ PD V F+ALI + G + A ++ EM + PD IT +L+
Sbjct: 302 MLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMIT--RGIAPDTITYNSLIDG 359
Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
+ A +++ ++ + Y+I IN + + ++ +++ KG+IP+
Sbjct: 360 FCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPN 419
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELY 319
+ + L+ +GK+ AA E+ QE ++G+ +++Y L+ G C N + KALE++
Sbjct: 420 TITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE-LNKALEIF 478
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
E M+ ++ + N +I +C+ ++ + + G+ P+ +TY++++ +K
Sbjct: 479 EKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKK 538
Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
+ ML + KEDG P+ + +I
Sbjct: 539 GSLSEADMLFRKMKEDGCTPDDFTYNILI 567
Score = 115 bits (289), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 105/421 (24%), Positives = 191/421 (45%), Gaps = 21/421 (4%)
Query: 25 VSEQLHSYNRLIRQG----RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
++E SY +R G ++++ IDL E M + L + R + K
Sbjct: 31 ITEAKLSYKERLRNGIVDIKVNDAIDLFESMIQSRPLPT-PIDFNRLCSAVARTKQYDLV 89
Query: 81 FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
F K + + T ++++ K AF VL + G + D ++TL+
Sbjct: 90 LGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNG 149
Query: 137 CAKSGKV-------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
G+V D M E +PD V + LI G V A VL + E +
Sbjct: 150 FCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL-VLIDRMVE-YGFQ 207
Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
PD +T G ++ +G A ++++ + + NIK + Y+I I+ + G ++ A S+
Sbjct: 208 PDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSL 267
Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
+++M KG+ D V S+LI + GK + ++L+E + I ++++S+L+
Sbjct: 268 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327
Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
+A ELY M + + P T N+LI C + L + ++ M S G P+ +T
Sbjct: 328 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVT 387
Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKC-IIGMC-SRRYEKARTLNEHVL 426
YSIL+ + + V+ G+ L + G+IPN + + ++G C S + A+ L + ++
Sbjct: 388 YSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMV 447
Query: 427 S 427
S
Sbjct: 448 S 448
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 97/391 (24%), Positives = 174/391 (44%), Gaps = 17/391 (4%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQ--KAIKEAF-RFFKLVPNP 90
L + G + E + LL +M + G+ D D V ++ N CK K KE R +++ +P
Sbjct: 413 LCKNGFLDEAVVLLNEMSKDGI-DPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSP 471
Query: 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
++ L+ C + A ++ + G D + L+T+ K+GKV E +
Sbjct: 472 NGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFM 531
Query: 151 K--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
+ P+ V F+ LI G SG +AF V EM H P T G+L+K
Sbjct: 532 RCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGH--HPTFFTYGSLLKGLC 589
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
G + A + K +H +Y + ++G+ A S++ +M ++ ++PD
Sbjct: 590 KGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSY 649
Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEH 321
++LI GK A +EA+ +G + + Y+ + A W+ + E
Sbjct: 650 TYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQ 709
Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
M ++ P + T NA+I ++ KT ++L +M + PN TY+ILL ++ D
Sbjct: 710 MDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKD 769
Query: 382 VEVGLMLLSQAKEDGVIPN-LVMFKCIIGMC 411
V +L +G++P+ L ++G+C
Sbjct: 770 VSTSFLLYRSIILNGILPDKLTCHSLVLGIC 800
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/408 (23%), Positives = 183/408 (44%), Gaps = 24/408 (5%)
Query: 25 VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
V + +YN LI R RI++ LL DM RK ++ ++V + N ++ + A
Sbjct: 259 VDADVCTYNMLIHDLCRSNRIAKGYLLLRDM-RKRMIHPNEVTYNTLINGFSNEGKVLIA 317
Query: 81 FRF------FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
+ F L PN TFN L+ S + + A ++ +++ GL Y L+
Sbjct: 318 SQLLNEMLSFGLSPNHV--TFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLL 375
Query: 135 TTCAKSGKVD---AMFENVKPD-----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
K+ + D + +K + R+ + +I ++G +D A +L EM+ +
Sbjct: 376 DGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKD--G 433
Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246
+DPD +T AL+ G+ A+E+ I++ + +Y+ I C + G + A
Sbjct: 434 IDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAI 493
Query: 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
+Y+ M +G D + L+ AGKV A E ++ + GI +S+ L+
Sbjct: 494 RIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGY 553
Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366
N+ KA +++ M + PT T +L+ LC G L + + L + ++ +T
Sbjct: 554 GNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDT 613
Query: 367 ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
+ Y+ LL A + ++ + L + + ++P+ + +I G+C +
Sbjct: 614 VMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRK 661
Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 92/421 (21%), Positives = 174/421 (41%), Gaps = 52/421 (12%)
Query: 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PT 91
+R+G I + +++ M G +A +V KS + + + F K + P
Sbjct: 134 LREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDV-SVWSFLKEMLKRKICPD 192
Query: 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
++TFN+L++V + E + +++ ++++G Y T++ K G+ A E
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252
Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
V D +N LI +S + + + +L +M + + P+ +T L+ +N
Sbjct: 253 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRM--IHPNEVTYNTLINGFSN 310
Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
G+V A ++ + + + + I+ G+++ A ++ M KG+ P EV
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370
Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHM 322
L+D + + A K G+ VG I+Y+ ++ G C N +A+ L M
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNG-FLDEAVVLLNEM 429
Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---- 378
+ P + T +ALI C + E++ + +GL PN I YS L+ C R
Sbjct: 430 SKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCL 489
Query: 379 ----------------KDDVEVGLMLLSQAK---------------EDGVIPNLVMFKCI 407
+D +++ S K DG++PN V F C+
Sbjct: 490 KEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCL 549
Query: 408 I 408
I
Sbjct: 550 I 550
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 131/297 (44%), Gaps = 21/297 (7%)
Query: 117 LVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDV 176
+V++ GL+ D + ITT + P R + L G+S V A
Sbjct: 60 VVKQPGLETDHIVQLVCITT-----HILVRARMYDPARHILKELSLMSGKSSFVFGALMT 114
Query: 177 ---LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI-- 231
L N V+ + L++ G + + E+++++ Y P VYT
Sbjct: 115 TYRLCNSNPSVYDI---------LIRVYLREGMIQDSLEIFRLMGLYGF--NPSVYTCNA 163
Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
+ ++G+ S +M K+ + PD + LI+ G E + ++Q+ + G
Sbjct: 164 ILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSG 223
Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
+ I++Y++++ ++ A+EL +HMKS + V T N LI LC +++ K
Sbjct: 224 YAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGY 283
Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
+L DM+ + PN +TY+ L+ + V + LL++ G+ PN V F +I
Sbjct: 284 LLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALI 340
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 80/353 (22%), Positives = 152/353 (43%), Gaps = 16/353 (4%)
Query: 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTL 92
R G + E I + E M +G ++ ++CK+ K + EA F + + + P
Sbjct: 485 RMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGK-VAEAEEFMRCMTSDGILPNT 543
Query: 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP 152
+F+ L++ +S + AF V + + G Y +L+ K G + + +K
Sbjct: 544 VSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKS 603
Query: 153 --------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
D V++N L+TA +SG + +A + EM + PD T +L+
Sbjct: 604 LHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQR--SILPDSYTYTSLISGLCRK 661
Query: 205 GQVDRAREVYKMIH-KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
G+ A K + N+ +YT ++ + G W+ + M G PD V
Sbjct: 662 GKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVT 721
Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
+A+ID GK+E ++L E NQ + +Y+ L+ S K+ + LY +
Sbjct: 722 TNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSII 781
Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
+ P T ++L+ +C+ + L +++L G+ + T+++L+ C
Sbjct: 782 LNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKC 834
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/325 (19%), Positives = 140/325 (43%), Gaps = 30/325 (9%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
P L+T+N+L+ + KD +F + R + +
Sbjct: 752 PNLTTYNILLHGYSKRKDVSTSFLLYRSI---------------------------ILNG 784
Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
+ PD++ ++L+ +S ++ +L V+ D T L+ C G+++
Sbjct: 785 ILPDKLTCHSLVLGICESNMLEIGLKILKAFICR--GVEVDRYTFNMLISKCCANGEINW 842
Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
A ++ K++ I + ++ ++ ++ + V +M+K+G+ P+ LI+
Sbjct: 843 AFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLIN 902
Query: 270 FAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP 329
G ++ AF + +E I ++ S+++ A + +A L M +KL P
Sbjct: 903 GLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVP 962
Query: 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389
T+++ L+ C + + +E+ M + GL + ++Y++L+ K D+ + L
Sbjct: 963 TIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELY 1022
Query: 390 SQAKEDGVIPNLVMFKCII-GMCSR 413
+ K DG + N +K +I G+ +R
Sbjct: 1023 EEMKGDGFLANATTYKALIRGLLAR 1047
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/257 (21%), Positives = 113/257 (43%), Gaps = 3/257 (1%)
Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
V++ LI + G + + ++ M ++ +P T A++ + +G+ K
Sbjct: 125 VYDILIRVYLREGMIQDSLEIFRLMG--LYGFNPSVYTCNAILGSVVKSGEDVSVWSFLK 182
Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
+ K I + I IN G +E + + M K G P V + ++ + G
Sbjct: 183 EMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKG 242
Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
+ +AA E+L K++G+ + +Y+ L+ + K L M+ + P T N
Sbjct: 243 RFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYN 302
Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
LI + ++ ++L++M S GL PN +T++ L+ + + + L + +
Sbjct: 303 TLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAK 362
Query: 396 GVIPNLVMFKCII-GMC 411
G+ P+ V + ++ G+C
Sbjct: 363 GLTPSEVSYGVLLDGLC 379
Score = 72.8 bits (177), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 78/366 (21%), Positives = 162/366 (44%), Gaps = 30/366 (8%)
Query: 58 DMDKV-YHARFFN-------VCKSQKAIKEAFRFFK---LVPNP--TLSTFNMLMSVCAS 104
+M KV +H FF +CK ++EA +F K VP T+ +L ++C S
Sbjct: 568 EMTKVGHHPTFFTYGSLLKGLCKGGH-LREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKS 626
Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--VDAMFE-------NVKPDRV 155
++ +VQ + L D YT+LI+ + GK + +F NV P++V
Sbjct: 627 GNLAKAVSLFGEMVQRSIL-PDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKV 685
Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
++ + ++G +M+ H PD +T A++ + G++++ ++
Sbjct: 686 MYTCFVDGMFKAGQWKAGIYFREQMDNLGHT--PDIVTTNAMIDGYSRMGKIEKTNDLLP 743
Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
+ N Y I ++ S+ D + +Y + G++PD++ +L+ +
Sbjct: 744 EMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESN 803
Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMG-ACSNAK-NWQKALELYEHMKSIKLKPTVST 333
+E +IL+ +G+ V +++ L+ C+N + NW A +L + M S+ + T
Sbjct: 804 MLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINW--AFDLVKVMTSLGISLDKDT 861
Query: 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393
+A+++ L + ++ VL +M G+ P + Y L+ R D++ ++ +
Sbjct: 862 CDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMI 921
Query: 394 EDGVIP 399
+ P
Sbjct: 922 AHKICP 927
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 116/275 (42%), Gaps = 5/275 (1%)
Query: 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAR 211
P NA++ + +SG + L EM + PD T L+ G +++
Sbjct: 156 PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKR--KICPDVATFNILINVLCAEGSFEKSS 213
Query: 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271
+ + + K T Y ++ + G ++ A + D M KGV D + LI
Sbjct: 214 YLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDL 273
Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
+ ++ + +L++ + + I ++Y++L+ SN A +L M S L P
Sbjct: 274 CRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNH 333
Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
T NALI + +++ M++ GL P+ ++Y +LL + + ++ +
Sbjct: 334 VTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMR 393
Query: 392 AKEDGVIPNLVMFKCII-GMCSRRY--EKARTLNE 423
K +GV + + +I G+C + E LNE
Sbjct: 394 MKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNE 428
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/379 (25%), Positives = 173/379 (45%), Gaps = 44/379 (11%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
PTL TF ++M + + + A +LR + + G + +Y TLI + +K +V+ +
Sbjct: 215 PTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQL 274
Query: 150 VK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
++ PD FN +I + ++ A ++ M + PD IT G LM
Sbjct: 275 LEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRM--LIRGFAPDDITYGYLMNGL 332
Query: 202 ANAGQVDRAREVY------------KMIHKYNIKGTPE-----------VYTIAINCCSQ 238
G+VD A++++ +IH + G + Y I + C+
Sbjct: 333 CKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTY 392
Query: 239 T----GDWE-----FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
G W+ A V DM KG P+ + L+D GK++ A+ +L E
Sbjct: 393 NSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSA 452
Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
G+ + ++ L+ A +A+E++ M KP V T N+LI+ LC+ D++
Sbjct: 453 DGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKH 512
Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
+ +L DM S G+ NT+TY+ L+ A R+ +++ L+++ G + + + +I
Sbjct: 513 ALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIK 572
Query: 409 GMC-SRRYEKARTLNEHVL 426
G+C + +KAR+L E +L
Sbjct: 573 GLCRAGEVDKARSLFEKML 591
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 97/412 (23%), Positives = 176/412 (42%), Gaps = 51/412 (12%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
L + RI+E ++ M +G D Y +CK + + A F +P P +
Sbjct: 297 LCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGR-VDAAKDLFYRIPKPEIVI 355
Query: 95 FNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
FN L+ + + A VL +V G+ D Y +LI K G V E
Sbjct: 356 FNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDM 415
Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
KP+ + L+ + G +D A++VL EM+A+ + P+ + L+ A
Sbjct: 416 RNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSAD--GLKPNTVGFNCLISAFCKEH 473
Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
++ A E+++ + + K P+VYT I+ + + + A + DM +GV+ + V
Sbjct: 474 RIPEAVEIFREMPRKGCK--PDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVT 531
Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM- 322
+ LI+ G+++ A +++ E QG + I+Y+SL+ A KA L+E M
Sbjct: 532 YNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKML 591
Query: 323 -------------------------------KSIKLK---PTVSTMNALITALCDGDQLP 348
K + L+ P + T N+LI LC ++
Sbjct: 592 RDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIE 651
Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
+ + +++ G+ P+T+T++ L+ + V +LL + EDG +PN
Sbjct: 652 DGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 703
Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 152/368 (41%), Gaps = 54/368 (14%)
Query: 22 AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
++ + + +YN LI ++G + +++L DM KG Y CK K I
Sbjct: 382 SYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGK-I 440
Query: 78 KEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
EA+ + P FN L+S A ++ R + G K D + +L
Sbjct: 441 DEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500
Query: 134 ITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
I+ + ++ D + E V + V +N LI A + G + A ++ EM +
Sbjct: 501 ISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 560
Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
P+D IT +L+K AG+VD+AR
Sbjct: 561 PLD--EITYNSLIKGLCRAGEVDKAR---------------------------------- 584
Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
S+++ M + G P + + LI+ +G VE A E +E +G + I++++SL+
Sbjct: 585 -SLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLING 643
Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
A + L ++ +++ + P T N L++ LC G + +L + G PN
Sbjct: 644 LCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPN 703
Query: 366 TITYSILL 373
T+SILL
Sbjct: 704 HRTWSILL 711
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 110/254 (43%), Gaps = 7/254 (2%)
Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA-REVY 214
V+ LI G +G +L +M E V + + I ++M+ AG + R +
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDE-GIVFKESLFI-SIMRDYDKAGFPGQTTRLML 170
Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
+M + Y+ + T + Y + + + A +V+ DM + + P ++
Sbjct: 171 EMRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAV 230
Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
++++A +L++ G + Y +L+ + S +AL+L E M + P T
Sbjct: 231 NEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETF 290
Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
N +I LC D++ + ++++ M G P+ ITY L+ + V+ L + +
Sbjct: 291 NDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK 350
Query: 395 DGVIPNLVMFKCII 408
P +V+F +I
Sbjct: 351 ----PEIVIFNTLI 360
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 79/372 (21%), Positives = 138/372 (37%), Gaps = 56/372 (15%)
Query: 81 FRFFKLVPNP-TLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLITTCA 138
F+ +KL+ P +ST L S S +F V + L+ + G + K L+
Sbjct: 79 FQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLLIQMK 138
Query: 139 KSGKV--DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
G V +++F ++ D G G R ++ EM V+ +P +
Sbjct: 139 DEGIVFKESLFISIMRD-------YDKAGFPGQTTR---LMLEMR-NVYSCEPTFKSYNV 187
Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
+++ + A V+ + I T + + + + + A S+ DMTK G
Sbjct: 188 VLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHG 247
Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQE-----------------------------A 287
+P+ V LI +V A ++L+E A
Sbjct: 248 CVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAA 307
Query: 288 KN------QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341
K +G + I+Y LM A +L+ + KP + N LI
Sbjct: 308 KMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----KPEIVIFNTLIHGF 363
Query: 342 CDGDQLPKTMEVLSDM-KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
+L VLSDM S G+ P+ TY+ L+ ++ V + L +L + G PN
Sbjct: 364 VTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPN 423
Query: 401 LVMFKCII-GMC 411
+ + ++ G C
Sbjct: 424 VYSYTILVDGFC 435
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 17/196 (8%)
Query: 31 SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
+YN LI R+G I E L+ +M +G + Y++ +C++ + K F K+
Sbjct: 531 TYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKM 590
Query: 87 VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
+ + P+ + N+L++ S E A + + + G D + +LI ++G++
Sbjct: 591 LRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 650
Query: 144 D---AMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
+ MF E + PD V FN L++ + G V A +L E + P+H T
Sbjct: 651 EDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIED--GFVPNHRTWS 708
Query: 196 ALMKACANAGQVDRAR 211
L+++ +DR R
Sbjct: 709 ILLQSIIPQETLDRRR 724
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 155/335 (46%), Gaps = 15/335 (4%)
Query: 73 SQKAIKEAF--RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLY 130
SQ + +F + KL P + TF L++ E A ++ + E G+K D +Y
Sbjct: 121 SQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMY 180
Query: 131 TTLITTCAKSGKVD---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
TT+I + K+G V+ ++F+ ++PD V++ +L+ SG A +L M
Sbjct: 181 TTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTK 240
Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
+ PD IT AL+ A G+ A E+Y + + +I YT IN G
Sbjct: 241 R--KIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCV 298
Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
+ A ++ M KG PD V ++LI+ KV+ A +I E +G++ I+Y++L
Sbjct: 299 DEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTL 358
Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-- 360
+ A E++ HM S + P + T N L+ LC ++ K + + DM+
Sbjct: 359 IQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREM 418
Query: 361 -GLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
G+ PN TY++LL +E LM+ ++
Sbjct: 419 DGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRK 453
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 143/331 (43%), Gaps = 14/331 (4%)
Query: 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT-TLITTC--------- 137
P P++ F L++V A K + + +Q G+ D LYT L+ C
Sbjct: 68 PLPSIIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHD--LYTCNLLMNCFCQSSQPYL 125
Query: 138 AKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
A S M +PD V F +LI ++ A ++ +M E+ + PD + +
Sbjct: 126 ASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQM-VEM-GIKPDVVMYTTI 183
Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
+ + G V+ A ++ + Y I+ +YT +N +G W A S+ MTK+ +
Sbjct: 184 IDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKI 243
Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
PD + +ALID GK A E+ E I+ I +Y+SL+ +A +
Sbjct: 244 KPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQ 303
Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
++ M++ P V +LI C ++ M++ +M GL NTITY+ L+
Sbjct: 304 MFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFG 363
Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
+ V + S GV PN+ + ++
Sbjct: 364 QVGKPNVAQEVFSHMVSRGVPPNIRTYNVLL 394
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/272 (21%), Positives = 114/272 (41%), Gaps = 14/272 (5%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
+++G+ + +L +M R + Y + C + + EA + F L+ P
Sbjct: 257 FVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCM-EGCVDEARQMFYLMETKGCFP 315
Query: 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
+ + L++ K + A ++ + + GL + YTTLI + GK + E
Sbjct: 316 DVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVF 375
Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA-EVHPVDPDHITIGALMKAC 201
V P+ +N L+ +G V +A + +M E+ V P+ T L+
Sbjct: 376 SHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGL 435
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
G++++A V++ + K + YTI I + G + A +++ + KGV P+
Sbjct: 436 CYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNV 495
Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGIS 293
V + +I G A + ++ K G+S
Sbjct: 496 VTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 161/345 (46%), Gaps = 21/345 (6%)
Query: 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127
C+ + + F ++V P + +N ++ SK + A +L +++ G+ D
Sbjct: 162 CRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDV 221
Query: 128 KLYTTLITTCAKSGK-------VDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAE 179
Y +LI+ SG+ V M + + PD FNALI AC + G V A + E
Sbjct: 222 VTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEE 281
Query: 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-PEV--YTIAINCC 236
M +DPD +T L+ ++D A E++ + KG P+V Y+I IN
Sbjct: 282 MIRR--SLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVS---KGCFPDVVTYSILINGY 336
Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
++ E ++ +M+++GV+ + V + LI AGK+ A EI + G+ I
Sbjct: 337 CKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNI 396
Query: 297 ISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
I+Y+ L+ G C N K +KAL + M+ + + T N +I +C ++ ++
Sbjct: 397 ITYNVLLHGLCDNGK-IEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYC 455
Query: 356 DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
+ GL P+ TY+ +++ +K L + KEDG++PN
Sbjct: 456 SLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILPN 500
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 155/340 (45%), Gaps = 14/340 (4%)
Query: 73 SQKAIKEAF--RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
SQ ++ +F + KL P++ TF L++ C + + + ++V G K + +
Sbjct: 130 SQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG-MGYKPNVVI 188
Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
Y T+I KS +VD + + PD V +N+LI+ SG A +++ M
Sbjct: 189 YNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMT 248
Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
+ PD T AL+ AC G+V A E Y+ + + ++ Y++ I
Sbjct: 249 KR--EIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSR 306
Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
+ A ++ M KG PD V S LI+ + KVE ++ E +G+ ++Y+
Sbjct: 307 LDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTI 366
Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
L+ A A E++ M + P + T N L+ LCD ++ K + +L+DM+ G
Sbjct: 367 LIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNG 426
Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401
+ + +TY+I++ + +V + G++P++
Sbjct: 427 MDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDI 466
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 152/350 (43%), Gaps = 17/350 (4%)
Query: 83 FFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD---CKLYTTLITT 136
FF +V P P+++ F+ L+S + K + + +Q G+ + C +
Sbjct: 69 FFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCR 128
Query: 137 CAK-SGKVDAMFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-HPVDPD 190
C++ S + + + +K P V F +L+ + DR +D L + V P+
Sbjct: 129 CSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRG---DRVYDALYMFDQMVGMGYKPN 185
Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
+ ++ + QVD A ++ + K I Y I+ +G W A +
Sbjct: 186 VVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVS 245
Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
MTK+ + PD +ALID G+V A E +E + + I++YS L+
Sbjct: 246 CMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYS 305
Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
+A E++ M S P V T + LI C ++ M++ +M G+ NT+TY+
Sbjct: 306 RLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYT 365
Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 418
IL+ R + V + + GV PN++ + ++ G+C + EKA
Sbjct: 366 ILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKA 415
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 126/264 (47%), Gaps = 7/264 (2%)
Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
KP+ V++N +I +S VD A D+L M E + PD +T +L+ ++G+ A
Sbjct: 183 KPNVVIYNTIIDGLCKSKQVDNALDLLNRM--EKDGIGPDVVTYNSLISGLCSSGRWSDA 240
Query: 211 REVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
+ + K I P+V+T I+ C + G A Y++M ++ + PD V S LI
Sbjct: 241 TRMVSCMTKREI--YPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI 298
Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
+++ A E+ ++G +++YS L+ +K + ++L+ M +
Sbjct: 299 YGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVV 358
Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
T LI C +L E+ M G+ PN ITY++LL +E L++
Sbjct: 359 RNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVI 418
Query: 389 LSQAKEDGVIPNLVMFKCII-GMC 411
L+ +++G+ ++V + II GMC
Sbjct: 419 LADMQKNGMDADIVTYNIIIRGMC 442
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 126/259 (48%), Gaps = 21/259 (8%)
Query: 23 HDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAI 77
++ + ++N LI ++GR+SE + E+M R+ L D D V Y + +C + +
Sbjct: 250 REIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL-DPDIVTYSLLIYGLCMYSR-L 307
Query: 78 KEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
EA F + + P + T+++L++ SK E ++ + + G+ + YT L
Sbjct: 308 DEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTIL 367
Query: 134 ITTCAKSGKVDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
I ++GK++ +F V P+ + +N L+ +G +++A +LA+M + +
Sbjct: 368 IQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADM--QKN 425
Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
+D D +T +++ AG+V A ++Y ++ + YT + + G A
Sbjct: 426 GMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREA 485
Query: 246 CSVYDDMTKKGVIPDEVFL 264
+++ M + G++P+E ++
Sbjct: 486 DALFRKMKEDGILPNECYV 504
Score = 36.2 bits (82), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 36/136 (26%)
Query: 315 ALELYEHMKSIKLKPTVS-----------------------------------TMNALIT 339
+L+L+ HM + P+++ T N L+
Sbjct: 65 SLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLN 124
Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
C QL + L M LG P+ +T+ LL R D V L + Q G P
Sbjct: 125 CFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKP 184
Query: 400 NLVMFKCII-GMCSRR 414
N+V++ II G+C +
Sbjct: 185 NVVIYNTIIDGLCKSK 200
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 119 bits (299), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/378 (24%), Positives = 169/378 (44%), Gaps = 16/378 (4%)
Query: 62 VYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRL 117
V +RFF+ K F K + + T N++++ + A+ VL
Sbjct: 89 VDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGK 148
Query: 118 VQEAGLKADCKLYTTLITTCAKSGKV-------DAMFEN-VKPDRVVFNALITACGQSGA 169
V + G + D + TLI GKV D M EN +PD V +N+++ +SG
Sbjct: 149 VMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGD 208
Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
A D+L +M E V D T ++ + G +D A ++K + IK + Y
Sbjct: 209 TSLALDLLRKM--EERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTY 266
Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
+ + G W + DM + ++P+ + + L+D GK++ A E+ +E
Sbjct: 267 NSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMIT 326
Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
+GIS II+Y++LM +A + + M K P + T +LI C ++
Sbjct: 327 RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDD 386
Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
M+V ++ GL N +TYSIL+ + +++ L + GV+P+++ + ++
Sbjct: 387 GMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD 446
Query: 409 GMCSR-RYEKARTLNEHV 425
G+C + EKA + E +
Sbjct: 447 GLCDNGKLEKALEIFEDL 464
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 169/395 (42%), Gaps = 34/395 (8%)
Query: 20 NYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
N DV + L R G I I L ++ME KG+ Y++ +CK+ K
Sbjct: 223 NVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDG 282
Query: 80 AFRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
A +V P + TFN+L+ V V+E L+ +LY +IT
Sbjct: 283 ALLLKDMVSREIVPNVITFNVLLDV---------------FVKEGKLQEANELYKEMIT- 326
Query: 137 CAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
+ P+ + +N L+ + A ++L M + PD +T +
Sbjct: 327 -----------RGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVR--NKCSPDIVTFTS 373
Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
L+K +VD +V++ I K + Y+I + Q+G + A ++ +M G
Sbjct: 374 LIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHG 433
Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKA 315
V+PD + L+D GK+E A EI ++ + + +GI+ Y++++ G C K + A
Sbjct: 434 VLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGK-VEDA 492
Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
L+ + +KP V T +I+ LC L + +L M+ G PN TY+ L+ A
Sbjct: 493 WNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRA 552
Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410
R D+ L+ + K G + K +I M
Sbjct: 553 HLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDM 587
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/426 (22%), Positives = 187/426 (43%), Gaps = 83/426 (19%)
Query: 31 SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
++N LI+ +G++SE + L++ M G C+
Sbjct: 160 TFNTLIKGLFLEGKVSEAVVLVDRMVENG---------------CQ-------------- 190
Query: 87 VPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM 146
P + T+N +++ S D+ A +LR ++E +KAD Y+T+I + + G +DA
Sbjct: 191 ---PDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247
Query: 147 F--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198
+ +K V +N+L+ ++G + +L +M + + P+ IT L+
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVS--REIVPNVITFNVLL 305
Query: 199 KACANAGQVDRAREVYK-MIHK--------YNI------------------------KGT 225
G++ A E+YK MI + YN K +
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365
Query: 226 PEV--YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283
P++ +T I + V+ +++K+G++ + V S L+ +GK++ A E+
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425
Query: 284 LQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342
QE + G+ +++Y L+ G C N K +KALE++E ++ K+ + +I +C
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGK-LEKALEIFEDLQKSKMDLGIVMYTTIIEGMC 484
Query: 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402
G ++ + + G+ PN +TY++++ +K + +LL + +EDG PN
Sbjct: 485 KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDC 544
Query: 403 MFKCII 408
+ +I
Sbjct: 545 TYNTLI 550
Score = 41.2 bits (95), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/137 (21%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
K + A + QE ++ +S A + K + L+ + ++ + + T+N
Sbjct: 68 KKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLN 127
Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
+I C + VL + LG P+T T++ L+ + V ++L+ + E+
Sbjct: 128 IMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVEN 187
Query: 396 GVIPNLVMFKCII-GMC 411
G P++V + I+ G+C
Sbjct: 188 GCQPDVVTYNSIVNGIC 204
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 95/402 (23%), Positives = 171/402 (42%), Gaps = 20/402 (4%)
Query: 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
++ L ++R R G E + LLE M RKG + D + + + + I +A R +
Sbjct: 90 TQMLKIFHRSCRSGNYIESLHLLETMVRKGY-NPDVILCTKLIKGFFTLRNIPKAVRVME 148
Query: 86 LVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
++ P + +N L++ + A +VL ++ D Y +I + GK
Sbjct: 149 ILEKFGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGK 208
Query: 143 VDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
+D + +N +P + + LI A G VD A ++ EM + + PD T
Sbjct: 209 LDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS--RGLKPDMFTY 266
Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKG-TPEV--YTIAINCCSQTGDWEFACSVYDD 251
+++ G VDRA ++M+ +KG P+V Y I + G WE +
Sbjct: 267 NTIIRGMCKEGMVDRA---FEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTK 323
Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
M + P+ V S LI GK+E A +L+ K +G++ SY L+ A
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGR 383
Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
A+E E M S P + N ++ LC + + +E+ + +G PN+ +Y+
Sbjct: 384 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNT 443
Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
+ A D L ++ + +G+ P+ + + +I R
Sbjct: 444 MFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCR 485
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/419 (24%), Positives = 183/419 (43%), Gaps = 28/419 (6%)
Query: 29 LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAF 81
+ +YN LI + RI + +L+ M K Y+ ++C K A+K
Sbjct: 158 VFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLN 217
Query: 82 RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
+ PT+ T+ +L+ + A +++ + GLK D Y T+I K G
Sbjct: 218 QLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEG 277
Query: 142 KVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
VD FE V+ PD + +N L+ A G + ++ +M +E DP+ +T
Sbjct: 278 MVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSE--KCDPNVVT 335
Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT----IAINCCSQTGDWEFACSVY 249
L+ G+++ A + K++ + + TP+ Y+ IA C + G + A
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGL--TPDAYSYDPLIAAFC--REGRLDVAIEFL 391
Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
+ M G +PD V + ++ GK + A EI + G S SY+++ A ++
Sbjct: 392 ETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSS 451
Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
+ +AL + M S + P T N++I+ LC + + E+L DM+S P+ +TY
Sbjct: 452 GDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTY 511
Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI---IGMCSRRYEKARTLNEHV 425
+I+L+ + +E + +L +G PN + + IG R E N+ V
Sbjct: 512 NIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELANDLV 570
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/355 (25%), Positives = 162/355 (45%), Gaps = 14/355 (3%)
Query: 82 RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
+ KL P + T N L++ C ++ S+ V ++V E G + D + TLI +
Sbjct: 141 KMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMV-EMGYQPDSFTFNTLIHGLFRH 199
Query: 141 GK-------VDAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
+ VD M + +PD V + ++ + G +D A +L +M E ++P +
Sbjct: 200 NRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKM--EQGKIEPGVV 257
Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
++ A N V+ A ++ + I+ Y I C G W A + DM
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM 317
Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
++ + P+ V SALID GK+ A ++ E + I I +YSSL+
Sbjct: 318 IERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377
Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
+A ++E M S P V T N LI C ++ + ME+ +M GL NT+TY+ L
Sbjct: 378 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTL 437
Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
+ + + + ++ Q DGV+P+++ + ++ G+C+ + E A + E++
Sbjct: 438 IHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYL 492
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/397 (21%), Positives = 176/397 (44%), Gaps = 17/397 (4%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
L R R SE + L++ M KG D V + N + I A K + P
Sbjct: 196 LFRHNRASEAVALVDRMVVKGC-QPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEP 254
Query: 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------- 142
+ +N ++ + K+ A + + G++ + Y +LI G+
Sbjct: 255 GVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLL 314
Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
D + + P+ V F+ALI A + G + A + EM +DPD T +L+
Sbjct: 315 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR--SIDPDIFTYSSLINGFC 372
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
++D A+ +++++ + Y I + + ++ +M+++G++ + V
Sbjct: 373 MHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTV 432
Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEH 321
+ LI A + + A + ++ + G+ I++YS L+ G C+N K + AL ++E+
Sbjct: 433 TYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGK-VETALVVFEY 491
Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
++ K++P + T N +I +C ++ ++ + G+ PN +TY+ ++ RK
Sbjct: 492 LQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGL 551
Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
E L + KE+G +P+ + +I R +KA
Sbjct: 552 KEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKA 588
Score = 93.6 bits (231), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/406 (21%), Positives = 175/406 (43%), Gaps = 16/406 (3%)
Query: 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKA 76
Y D+ N RIS+ + L+ M G + + H F ++ +A
Sbjct: 147 YEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHG-LFRHNRASEA 205
Query: 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
+ R P L T+ ++++ D + A +L+ +++ ++ +Y T+I
Sbjct: 206 VALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA 265
Query: 137 -CAKSGKVDAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
C DA+ + ++P+ V +N+LI G A +L++M ++
Sbjct: 266 LCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER--KIN 323
Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
P+ +T AL+ A G++ A ++Y + K +I Y+ IN + A +
Sbjct: 324 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 383
Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
++ M K P+ V + LI A +V+ E+ +E +G+ ++Y++L+
Sbjct: 384 FELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 443
Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
A+ A +++ M S + P + T + L+ LC+ ++ + V ++ + P+ T
Sbjct: 444 ARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYT 503
Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
Y+I++ + VE G L GV PN+V + ++ G C +
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 549
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 83/375 (22%), Positives = 156/375 (41%), Gaps = 52/375 (13%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
N L ++G I + LL+ ME +G ++ V + + + K + +A F + N
Sbjct: 229 NGLCKRGDIDLALSLLKKME-QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGI 287
Query: 90 -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
P + T+N L+ + A ++L + E + + ++ LI K GK+
Sbjct: 288 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 347
Query: 144 --DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
D M + ++ PD +++LI +D A + M ++ P+ +T L+K
Sbjct: 348 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK--DCFPNVVTYNTLIKG 405
Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
A +VD E+++ + + + G YT I+ Q + + A V+ M GV+PD
Sbjct: 406 FCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPD 465
Query: 261 EVFLSALIDFAGH-----------------------------------AGKVEAAFEILQ 285
+ S L+D + AGKVE +++
Sbjct: 466 IMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFC 525
Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDG 344
+G+ +++Y+++M ++A L+ MK P T N LI A L DG
Sbjct: 526 SLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDG 585
Query: 345 DQLPKTMEVLSDMKS 359
D+ + E++ +M+S
Sbjct: 586 DK-AASAELIREMRS 599
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 79/170 (46%), Gaps = 1/170 (0%)
Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
A +++ DM K P V S L+ K + + ++ +N GIS + +YS L+
Sbjct: 65 AVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILIN 124
Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
AL + M + +P + T+N+L+ C G+++ + ++ M +G P
Sbjct: 125 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQP 184
Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
++ T++ L+ R + + L+ + G P+LV + ++ G+C R
Sbjct: 185 DSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKR 234
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 116/272 (42%), Gaps = 13/272 (4%)
Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
+D A ++ +M + P P + L+ A A + D + + + I Y
Sbjct: 62 LDDAVNLFGDM-VKSRPF-PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTY 119
Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
+I INC + A +V M K G PD V L++L++ H ++ A ++ +
Sbjct: 120 SILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVE 179
Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
G ++++L+ +A+ L + M +P + T ++ LC +
Sbjct: 180 MGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDL 239
Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
+ +L M+ + P + Y+ ++ A +V L L ++ G+ PN+V + +I
Sbjct: 240 ALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 299
Query: 410 -MCSR-RYEKA---------RTLNEHVLSFNS 430
+C+ R+ A R +N +V++F++
Sbjct: 300 CLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 21/342 (6%)
Query: 31 SYNRLIR----QGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
+YN LIR GR S+ LL DM ERK ++ + V + + + + EA + +
Sbjct: 293 TYNSLIRCLCNYGRWSDASRLLSDMIERK--INPNVVTFSALIDAFVKEGKLVEAEKLYD 350
Query: 85 ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
K +P + T++ L++ + A + L+ + Y TLI K+
Sbjct: 351 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 410
Query: 142 KVDAMFENVKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
+VD E + + V + LI Q+ D A V +M ++ V PD +T
Sbjct: 411 RVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSD--GVLPDIMT 468
Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
L+ N G+V+ A V++ + + ++ Y I I + G E ++ ++
Sbjct: 469 YSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 528
Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
KGV P+ V + ++ G E A + +E K +G +Y++L+ A +
Sbjct: 529 LKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKA 588
Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
+ EL M+S + ST+ + L DG +++LS
Sbjct: 589 ASAELIREMRSCRFVGDASTIGLVTNMLHDGRLDKSFLKMLS 630
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 121/526 (23%), Positives = 224/526 (42%), Gaps = 100/526 (19%)
Query: 81 FRFFKLVPNPTLS--TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
+ F L TL+ T+N L+ CA + D E A ++ +++ G ++D Y+ +I +
Sbjct: 184 YEAFLLSQKQTLTPLTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLT 243
Query: 139 KSGKVDA-----MFENVKPDRV-----VFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
+S K+D+ +++ ++ D++ + N +I +SG +A +L A+ +
Sbjct: 244 RSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLG--MAQATGLS 301
Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
T+ +++ A A++G+ A +++ + + IK Y + +TG + A S+
Sbjct: 302 AKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESM 361
Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
+M K+GV PDE S LID +AG+ E+A +L+E + + +S L+ +
Sbjct: 362 VSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRD 421
Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
WQK ++ + MKSI +KP N +I + L M M S G+ P+ +T
Sbjct: 422 RGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVT 481
Query: 369 YSILL------------------------VAC--------------ERKDDVEVGLMLLS 390
++ L+ + C ER DD++ LL
Sbjct: 482 WNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMK---RLLG 538
Query: 391 QAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREA 450
+ K G++PN+V ++ + Y K+ N+ A+ E
Sbjct: 539 KMKSQGILPNVVTHTTLVDV----YGKSGRFND-------------------AIECLEEM 575
Query: 451 IVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGV-SADALKRSNLC--SLIDGFGE- 506
G P+ + + ++ + E+ V V ++D LK S L SLI+ FGE
Sbjct: 576 KSVGLKPSSTMYNALINAYA---QRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGED 632
Query: 507 -YDPRAFSLLEEAASFGIVPCV--------------SFKEIPVVVD 537
D AF++L+ G+ P V F+++PVV +
Sbjct: 633 RRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYE 678
Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/360 (23%), Positives = 161/360 (44%), Gaps = 13/360 (3%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS---QKAIKEAFRFFKLVPNPT 91
L GR E L E++ + G+ + Y+A K+ + A K +P
Sbjct: 314 LADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPD 373
Query: 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
T+++L+ ++ E A VL+ ++ ++ + +++ L+ G+ F+
Sbjct: 374 EHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLK 433
Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
VKPDR +N +I G+ +D A M +E ++PD +T L+
Sbjct: 434 EMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSE--GIEPDRVTWNTLIDCHCK 491
Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
G+ A E+++ + + Y I IN W+ + M +G++P+ V
Sbjct: 492 HGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVT 551
Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
+ L+D G +G+ A E L+E K+ G+ Y++L+ A + ++A+ + M
Sbjct: 552 HTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMT 611
Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
S LKP++ +N+LI A + + + VL MK G+ P+ +TY+ L+ A R D +
Sbjct: 612 SDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQ 671
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 115/512 (22%), Positives = 207/512 (40%), Gaps = 82/512 (16%)
Query: 31 SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA------ 80
+YN LI R I + ++L+ M + G Y + F N +++ +
Sbjct: 199 TYNALIGACARNNDIEKALNLIAKMRQDG-------YQSDFVNYSLVIQSLTRSNKIDSV 251
Query: 81 --FRFFKLVPNPTL----STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
R +K + L N ++ A S D A Q+L + Q GL A ++I
Sbjct: 252 MLLRLYKEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSII 311
Query: 135 TTCAKSGKV---DAMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
+ A SG+ +A+FE +KP +NAL+ ++G + A +++EM E
Sbjct: 312 SALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEM--EKRG 369
Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE--- 243
V PD T L+ A NAG+ + AR V K + +++ V++ + G+W+
Sbjct: 370 VSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTF 429
Query: 244 ---------------------------FAC-----SVYDDMTKKGVIPDEVFLSALIDFA 271
F C + +D M +G+ PD V + LID
Sbjct: 430 QVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCH 489
Query: 272 GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331
G+ A E+ + + +G +Y+ ++ + + + W L MKS + P V
Sbjct: 490 CKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNV 549
Query: 332 STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391
T L+ + +E L +MKS+GL P++ Y+ L+ A ++ E +
Sbjct: 550 VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRV 609
Query: 392 AKEDGVIPNLVMFKCIIGMC--SRRYEKARTLNEHVLSFNSGRPQIENKWTSLALM---- 445
DG+ P+L+ +I RR +A + ++ + N +P + T + +
Sbjct: 610 MTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQY-MKENGVKPDVVTYTTLMKALIRVD 668
Query: 446 -------VYREAIVAGTIPTVEVVSKVLGCLQ 470
VY E I++G P + S + L+
Sbjct: 669 KFQKVPVVYEEMIMSGCKPDRKARSMLRSALR 700
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/269 (21%), Positives = 119/269 (44%), Gaps = 9/269 (3%)
Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
++++ LI A G+S + AF L + P +T AL+ ACA +++A +
Sbjct: 168 LLYSILIHALGRSEKLYEAF--LLSQKQTLTP-----LTYNALIGACARNNDIEKALNLI 220
Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272
+ + + Y++ I +++ D +Y ++ + + D ++ +I
Sbjct: 221 AKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLYKEIERDKLELDVQLVNDIIMGFA 280
Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
+G A ++L A+ G+S + S++ A +++ +A L+E ++ +KP
Sbjct: 281 KSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTR 340
Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
NAL+ L ++S+M+ G+ P+ TYS+L+ A E ++L +
Sbjct: 341 AYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEM 400
Query: 393 KEDGVIPNLVMFKCIIGMCSRRYEKARTL 421
+ V PN +F ++ R E +T
Sbjct: 401 EAGDVQPNSFVFSRLLAGFRDRGEWQKTF 429
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/415 (23%), Positives = 184/415 (44%), Gaps = 19/415 (4%)
Query: 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF- 81
+ +N+L+ + + I L E M+R G+ Y+ C+ SQ ++ A
Sbjct: 84 SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 143
Query: 82 -RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
+ KL P++ T + L++ K A ++ + E G + D +TTLI
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203
Query: 141 GK-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
K VD M + +P+ V + ++ + G +D AF++L +M E ++ + +
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM--EAAKIEANVV 261
Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
++ + D A ++ + ++ Y+ I+C W A + DM
Sbjct: 262 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDM 321
Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
++ + P+ V +ALID GK+ A ++ E + I I +YSSL+
Sbjct: 322 IERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 381
Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
+A ++E M S P V T N LI C ++ + +E+ +M GL NT+TY+ L
Sbjct: 382 DEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTL 441
Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
+ + D + M+ Q DGV PN++ + ++ G+C + EKA + E++
Sbjct: 442 IHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 496
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/387 (22%), Positives = 182/387 (47%), Gaps = 16/387 (4%)
Query: 40 RISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RIS+ + L++ M G + + H F + K+ +A+ R + P L T+
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN-KASEAVALVDRMVQRGCQPNLVTY 228
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSGKVDAM-----FEN 149
++++ D + AF +L ++ A ++A+ +Y+T+I + C + DA+ EN
Sbjct: 229 GVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMEN 288
Query: 150 --VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
V+P+ + +++LI+ A +L++M ++P+ +T AL+ A G++
Sbjct: 289 KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIER--KINPNVVTFNALIDAFVKEGKL 346
Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
A ++Y + K +I Y+ IN + A +++ M K P+ V + L
Sbjct: 347 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 406
Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
I+ A +++ E+ +E +G+ ++Y++L+ A++ A +++ M S +
Sbjct: 407 INGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV 466
Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
P + T N L+ LC +L K M V ++ + P TY+I++ + VE G
Sbjct: 467 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 526
Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCSR 413
L GV P+++++ +I G C +
Sbjct: 527 LFCSLSLKGVKPDVIIYNTMISGFCRK 553
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/380 (20%), Positives = 156/380 (41%), Gaps = 50/380 (13%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
N L ++G I +LL ME + +Y ++CK + +A F + N
Sbjct: 233 NGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHE-DDALNLFTEMENKGV 291
Query: 90 -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
P + T++ L+S + + A ++L + E + + + LI K GK+
Sbjct: 292 RPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEK 351
Query: 144 --DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
D M + ++ PD +++LI +D A + M ++ P+ +T L+
Sbjct: 352 LYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK--DCFPNVVTYNTLING 409
Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
A ++D E+++ + + + G YT I+ Q D + A V+ M GV P+
Sbjct: 410 FCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPN 469
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
+ + L+D GK+E A + ++E
Sbjct: 470 IMTYNTLLDGLCKNGKLEKA-----------------------------------MVVFE 494
Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
+++ K++PT+ T N +I +C ++ ++ + G+ P+ I Y+ ++ RK
Sbjct: 495 YLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKG 554
Query: 381 DVEVGLMLLSQAKEDGVIPN 400
E L + +EDG +P+
Sbjct: 555 LKEEADALFRKMREDGPLPD 574
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 106/254 (41%), Gaps = 13/254 (5%)
Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
P L+ A A + D + + + + I Y I INC + A ++
Sbjct: 83 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142
Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
M K G P V LS+L++ H ++ A ++ + G I++++L+
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
+A+ L + M +P + T ++ LC + +L+ M++ + N +
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVI 262
Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK----------- 417
YS ++ + + + L L ++ + GV PN++ + +I C YE+
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS-CLCNYERWSDASRLLSDM 321
Query: 418 -ARTLNEHVLSFNS 430
R +N +V++FN+
Sbjct: 322 IERKINPNVVTFNA 335
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/282 (19%), Positives = 112/282 (39%), Gaps = 35/282 (12%)
Query: 223 KGTPEVYTIAINCC----------SQTGDW-------------EFACSVYDDMTKKGVIP 259
KG P + +I+ C S +GD+ + A ++ M K +P
Sbjct: 24 KGNPRIAPSSIDLCGMCYWGRAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRPLP 83
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
+ L+ K + + ++ + GIS + +Y+ L+ AL L
Sbjct: 84 SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALL 143
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
M + +P++ T+++L+ C G ++ + ++ M +G P+TIT++ L+
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203
Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-----------RYEKARTLNEHVLS 427
+ + L+ + + G PNLV + ++ G+C R + E A+ V+
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIY 263
Query: 428 FNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
+ + AL ++ E G P V S ++ CL
Sbjct: 264 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCL 305
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/407 (24%), Positives = 180/407 (44%), Gaps = 19/407 (4%)
Query: 29 LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF-- 81
+ +N+L+ + + I L E M+R G+ Y+ C+ SQ ++ A
Sbjct: 10 IFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLG 69
Query: 82 RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
+ KL P++ T + L++ K A ++ + E G + D +TTLI
Sbjct: 70 KMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHN 129
Query: 142 K-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
K VD M + +P+ V + ++ + G +D AF++L +M E ++ D +
Sbjct: 130 KASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM--EAAKIEADVVI 187
Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
++ + VD A ++K + I+ Y+ I+C G W A + DM
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247
Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
+K + P+ V +ALID GK A ++ + + I I +Y+SL+
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307
Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
KA +++E M S P + T N LI C ++ E+ +M GL +T+TY+ L+
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367
Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 418
D + + Q DGV P+++ + ++ G+C+ + EKA
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKA 414
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/397 (21%), Positives = 181/397 (45%), Gaps = 17/397 (4%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
L + SE + L++ M ++G Y +CK + I AF + +
Sbjct: 125 LFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCK-RGDIDLAFNLLNKMEAAKIEA 183
Query: 95 ----FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------- 142
FN ++ + + A + + ++ G++ + Y++LI+ G+
Sbjct: 184 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 243
Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
D + + + P+ V FNALI A + G A + +M +DPD T +L+
Sbjct: 244 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKR--SIDPDIFTYNSLINGFC 301
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
++D+A+++++ + + + Y I ++ E ++ +M+ +G++ D V
Sbjct: 302 MHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 361
Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEH 321
+ LI H G + A ++ ++ + G+ I++YS L+ G C+N K +KALE++++
Sbjct: 362 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK-LEKALEVFDY 420
Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
M+ ++K + +I +C ++ ++ + G+ PN +TY+ ++ K
Sbjct: 421 MQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRL 480
Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
++ LL + KEDG +P+ + +I R +KA
Sbjct: 481 LQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKA 517
Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 89/361 (24%), Positives = 155/361 (42%), Gaps = 15/361 (4%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
N L ++G I +LL ME + +++ ++CK + + +A FK +
Sbjct: 158 NGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCK-YRHVDDALNLFKEMETKGI 216
Query: 90 -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
P + T++ L+S S A Q+L + E + + + LI K GK
Sbjct: 217 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 276
Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
D + ++ PD +N+LI +D+A + M ++ PD T L+K
Sbjct: 277 LHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSK--DCFPDLDTYNTLIKG 334
Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
+ +V+ E+++ + + G YT I GD + A V+ M GV PD
Sbjct: 335 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 394
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
+ S L+D + GK+E A E+ + I + I Y++++ A +L+
Sbjct: 395 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 454
Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
+ +KP V T N +I+ LC L + +L MK G P++ TY+ L+ A R
Sbjct: 455 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDG 514
Query: 381 D 381
D
Sbjct: 515 D 515
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 149/343 (43%), Gaps = 23/343 (6%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
+ L + + + ++L ++ME KG+ Y + +C + + ++ N
Sbjct: 193 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 252
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK----ADCKLYTTLITTCAKSGKVDA 145
P L TFN L+ EG F + + +K D Y +LI ++D
Sbjct: 253 PNLVTFNALIDAFVK----EGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDK 308
Query: 146 ---MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
MFE + PD +N LI +S V+ ++ EM+ + D +T L
Sbjct: 309 AKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHR--GLVGDTVTYTTL 366
Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
++ + G D A++V+K + + Y+I ++ G E A V+D M K +
Sbjct: 367 IQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEI 426
Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
D + +I+ AGKV+ +++ +G+ +++Y++++ + + Q+A
Sbjct: 427 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 486
Query: 318 LYEHMKSIKLKPTVSTMNALITA-LCDGDQLPKTMEVLSDMKS 359
L + MK P T N LI A L DGD+ + E++ +M+S
Sbjct: 487 LLKKMKEDGPLPDSGTYNTLIRAHLRDGDK-AASAELIREMRS 528
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/343 (23%), Positives = 144/343 (41%), Gaps = 46/343 (13%)
Query: 25 VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
++ L ++N LI ++G+ E L +DM ++ + D D + N + +A
Sbjct: 251 INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSI-DPDIFTYNSLINGFCMHDRLDKA 309
Query: 81 FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
+ F+ + + P L T+N L+ SK E ++ R + GL D YTTLI
Sbjct: 310 KQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQ- 368
Query: 137 CAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
+F + G D A V +M ++ P PD +T
Sbjct: 369 --------GLFHD------------------GDCDNAQKVFKQMVSDGVP--PDIMTYSI 400
Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD----WEFACSVYDDM 252
L+ N G++++A EV+ + K IK +YT I + G W+ CS +
Sbjct: 401 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS----L 456
Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
+ KGV P+ V + +I ++ A+ +L++ K G +Y++L+ A +
Sbjct: 457 SLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDK 516
Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
+ EL M+S + ST+ + L DG +++LS
Sbjct: 517 AASAELIREMRSCRFVGDASTIGLVANMLHDGRLDKSFLDMLS 559
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/253 (19%), Positives = 108/253 (42%), Gaps = 11/253 (4%)
Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
P L+ A A + D + + + + I Y I INC + A ++
Sbjct: 8 PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67
Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
M K G P V LS+L++ H ++ A ++ + G I++++L+
Sbjct: 68 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127
Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
+A+ L + M +P + T ++ LC + +L+ M++ + + +
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187
Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKA-------- 418
++ ++ + + V+ L L + + G+ PN+V + +I +CS R+ A
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247
Query: 419 -RTLNEHVLSFNS 430
+ +N ++++FN+
Sbjct: 248 EKKINPNLVTFNA 260
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 101/231 (43%), Gaps = 14/231 (6%)
Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
M K +P + L+ K + + ++ + GIS + +Y+ L+
Sbjct: 1 MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60
Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
AL L M + +P++ T+++L+ C G ++ + ++ M +G P+TIT++
Sbjct: 61 ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120
Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-----------RYEKAR 419
L+ + + L+ + + G PNLV + ++ G+C R + E A+
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 180
Query: 420 TLNEHVLSFNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
+ V+ FN+ + + + AL +++E G P V S ++ CL
Sbjct: 181 -IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 230
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic
OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 144/293 (49%), Gaps = 10/293 (3%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
P L T+N+L+ + E A V V+ G D Y L+ KSGK+D +FE
Sbjct: 783 PKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFEL 842
Query: 150 VK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
K + + N +I+ ++G VD A D+ ++ ++ P T G L+
Sbjct: 843 YKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSD-RDFSPTACTYGPLIDGL 901
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
+ +G++ A+++++ + Y + +Y I IN + G+ + AC+++ M K+GV PD
Sbjct: 902 SKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDL 961
Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
S L+D G+V+ +E K G++ ++ Y+ ++ + ++AL L+
Sbjct: 962 KTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNE 1021
Query: 322 MKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
MK+ + + P + T N+LI L + + ++ ++++ GL PN T++ L+
Sbjct: 1022 MKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALI 1074
Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 99/436 (22%), Positives = 184/436 (42%), Gaps = 62/436 (14%)
Query: 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC----KSQKAIKE 79
L +Y+ L+ ++ I + LL++ME GL VY F +C I E
Sbjct: 222 SLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGL--KPNVYT---FTICIRVLGRAGKINE 276
Query: 80 AFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
A+ K + + P + T+ +L+ +++ + A +V ++ K D Y TL+
Sbjct: 277 AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLD 336
Query: 136 TCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
+ + +D++ + PD V F L+ A ++G AFD L M + +
Sbjct: 337 RFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQ--GI 394
Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
P+ T L+ ++D A E++ + +K T Y + I+ ++GD A
Sbjct: 395 LPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALE 454
Query: 248 VYDDMTKKGV-----------------------------------IPDEVFLSALIDFAG 272
++ M KG+ +PD V + ++
Sbjct: 455 TFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYS 514
Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
G+++ A ++L E G +I +SL+ A +A +++ MK +KLKPTV
Sbjct: 515 KVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVV 574
Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
T N L+ L ++ + +E+ M G PNTIT++ L + D+V + L +L +
Sbjct: 575 TYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM 634
Query: 393 KEDGVIPNLVMFKCII 408
+ G +P++ + II
Sbjct: 635 MDMGCVPDVFTYNTII 650
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/390 (22%), Positives = 168/390 (43%), Gaps = 22/390 (5%)
Query: 50 DMERKGLLDMDKVYHARFFNVCKSQKAIKEA------FRFFKLVPNPTLSTFNMLMSVCA 103
D+ +K ++ D + F + +K+A R F V N ++N L+ +
Sbjct: 142 DLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAY--SYNGLIHLLL 199
Query: 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRV 155
S+ A +V R + G + + Y++L+ K +D++ +KP+
Sbjct: 200 KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVY 259
Query: 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYK 215
F I G++G ++ A+++L M+ E PD +T L+ A A ++D A+EV++
Sbjct: 260 TFTICIRVLGRAGKINEAYEILKRMDDE--GCGPDVVTYTVLIDALCTARKLDCAKEVFE 317
Query: 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275
+ K Y ++ S D + + +M K G +PD V + L+D AG
Sbjct: 318 KMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAG 377
Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
AF+ L ++QGI + +Y++L+ ALEL+ +M+S+ +KPT T
Sbjct: 378 NFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYI 437
Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
I +E MK+ G+ PN + + L + + + K+
Sbjct: 438 VFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDI 497
Query: 396 GVIPNLVMFKCIIGMCSRRYEKARTLNEHV 425
G++P+ V + M + Y K ++E +
Sbjct: 498 GLVPDSVTYN----MMMKCYSKVGEIDEAI 523
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/321 (22%), Positives = 145/321 (45%), Gaps = 11/321 (3%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
P + TF +L+ + + AF L ++++ G+ + Y TLI + ++D E
Sbjct: 361 PDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEL 420
Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
VKP + I G+SG A + +M + + P+ + A + +
Sbjct: 421 FGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTK--GIAPNIVACNASLYSL 478
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
A AG+ A++++ + + Y + + C S+ G+ + A + +M + G PD
Sbjct: 479 AKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDV 538
Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
+ +++LI+ A +V+ A+++ K + +++Y++L+ Q+A+EL+E
Sbjct: 539 IVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEG 598
Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
M P T N L LC D++ +++L M +G P+ TY+ ++ +
Sbjct: 599 MVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQ 658
Query: 382 VEVGLMLLSQAKEDGVIPNLV 402
V+ + Q K+ V P+ V
Sbjct: 659 VKEAMCFFHQMKK-LVYPDFV 678
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/329 (21%), Positives = 141/329 (42%), Gaps = 30/329 (9%)
Query: 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209
V+P +N LI ++ ++ A DV ++ + PD T L+ A +G++D
Sbjct: 781 VQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKST--GCIPDVATYNFLLDAYGKSGKIDE 838
Query: 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD-MTKKGVIPDEVFLSALI 268
E+YK + + + + I I+ + G+ + A +Y D M+ + P LI
Sbjct: 839 LFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLI 898
Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
D +G++ A ++ + + G Y+ L+ A A L++ M ++
Sbjct: 899 DGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVR 958
Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
P + T + L+ LC ++ + + ++K GL P+ + Y++++ + +E L+L
Sbjct: 959 PDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVL 1018
Query: 389 LSQAKED-GVIPNLVMFKCII---GMCSRRYEKARTLNE--------HVLSFN------- 429
++ K G+ P+L + +I G+ E + NE +V +FN
Sbjct: 1019 FNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYS 1078
Query: 430 -SGRPQIENKWTSLALMVYREAIVAGTIP 457
SG+P+ A VY+ + G P
Sbjct: 1079 LSGKPE-------HAYAVYQTMVTGGFSP 1100
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 87/391 (22%), Positives = 168/391 (42%), Gaps = 27/391 (6%)
Query: 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS--QKAIKEAFRFFK---LVPNPT 91
+ G ++ E M+ KG+ +A +++ K+ + K+ F K LVP+
Sbjct: 445 KSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSV 504
Query: 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--- 148
T+NM+M + + + A ++L + E G + D + +LI T K+ +VD ++
Sbjct: 505 --TYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFM 562
Query: 149 -----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
+KP V +N L+ G++G + A ++ M + P P+ IT L
Sbjct: 563 RMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCP--PNTITFNTLFDCLCK 620
Query: 204 AGQVDRA-REVYKMIHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
+V A + ++KM+ ++ P+V+T I + G + A + M KK V PD
Sbjct: 621 NDEVTLALKMLFKMM---DMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM-KKLVYPD 676
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQE-AKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
V L L+ A +E A++I+ N + + L+G+ A+
Sbjct: 677 FVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSILAEAGIDNAVSFS 736
Query: 320 EHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDM-KSLGLCPNTITYSILLVACE 377
E + + + + S + +I C + + + K LG+ P TY++L+
Sbjct: 737 ERLVANGICRDGDSILVPIIRYSCKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLL 796
Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
D +E+ + Q K G IP++ + ++
Sbjct: 797 EADMIEIAQDVFLQVKSTGCIPDVATYNFLL 827
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/331 (23%), Positives = 143/331 (43%), Gaps = 21/331 (6%)
Query: 25 VSEQLHSYNRLIRQGRISECIDLLEDM----ERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
V +L +YN LI ++ I++ +D+ + G + Y+ KS K I E
Sbjct: 781 VQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGK-IDEL 839
Query: 81 FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLR-LVQEAGLKADCKLYTTLIT 135
F +K + T N+++S + + + A + L+ + Y LI
Sbjct: 840 FELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLID 899
Query: 136 TCAKSGKV---DAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
+KSG++ +FE + +P+ ++N LI G++G D A + M E V
Sbjct: 900 GLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKE--GV 957
Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
PD T L+ G+VD +K + + + Y + IN ++ E A
Sbjct: 958 RPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALV 1017
Query: 248 VYDDM-TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306
++++M T +G+ PD ++LI G AG VE A +I E + G+ + ++++L+
Sbjct: 1018 LFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGY 1077
Query: 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337
S + + A +Y+ M + P T L
Sbjct: 1078 SLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 116 bits (291), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 104/414 (25%), Positives = 184/414 (44%), Gaps = 25/414 (6%)
Query: 32 YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFN-VCKSQK---AIKEAFRF 83
+N+L+ + + I L E M+ G+ D ++ F N C+ + A+ +
Sbjct: 86 FNKLLSAVAKMNKFELVISLGEQMQTLGI-SHDLYTYSIFINCFCRRSQLSLALAVLAKM 144
Query: 84 FKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK- 142
KL P + T + L++ SK A ++ + E G K D +TTLI K
Sbjct: 145 MKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKA 204
Query: 143 ------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
VD M + +PD V + ++ + G +D A +L +M E ++ D +
Sbjct: 205 SEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKM--EKGKIEADVVIYN 262
Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMT 253
++ +D A ++ + I+ P+V+T + I+C G W A + DM
Sbjct: 263 TIIDGLCKYKHMDDALNLFTEMDNKGIR--PDVFTYSSLISCLCNYGRWSDASRLLSDMI 320
Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
++ + P+ V SALID GK+ A ++ E + I I +YSSL+
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 380
Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373
+A ++E M S P V T + LI C ++ + ME+ +M GL NT+TY+ L+
Sbjct: 381 EAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440
Query: 374 VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
+ D + M+ Q GV PN++ + ++ G+C + KA + E++
Sbjct: 441 HGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 494
Score = 112 bits (280), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 92/406 (22%), Positives = 179/406 (44%), Gaps = 16/406 (3%)
Query: 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL----LDMDKVYHARFFNVCKSQKA 76
Y D+ N RIS+ + L++ M G + H F + K+ +A
Sbjct: 149 YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHN-KASEA 207
Query: 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
+ + + P L T+ +++ D + A +L+ +++ ++AD +Y T+I
Sbjct: 208 VALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDG 267
Query: 137 CAKSGKVDAMF--------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
K +D + ++PD +++LI+ G A +L++M ++
Sbjct: 268 LCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIE--RKIN 325
Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
P+ +T AL+ A G++ A ++Y + K +I Y+ IN + A +
Sbjct: 326 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 385
Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
++ M K P+ V S LI A +VE E+ +E +G+ ++Y++L+
Sbjct: 386 FELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQ 445
Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
A++ A +++ M S+ + P + T N L+ LC +L K M V ++ + P+ T
Sbjct: 446 ARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYT 505
Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
Y+I++ + VE G L GV PN++ + +I G C +
Sbjct: 506 YNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRK 551
Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 166/388 (42%), Gaps = 15/388 (3%)
Query: 33 NRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
NRL ++ + +DL DM + +++ +K+ A + K + I + L
Sbjct: 56 NRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSA-VAKMNKFELVISLGEQMQTLGI 114
Query: 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK------ 142
+ L T+++ ++ A VL + + G + D ++L+ S +
Sbjct: 115 SHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVA 174
Query: 143 -VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
VD M E KPD F LI A ++ +M PD +T G ++
Sbjct: 175 LVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQ--RGCQPDLVTYGTVVNG 232
Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
G +D A + K + K I+ +Y I+ + + A +++ +M KG+ PD
Sbjct: 233 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPD 292
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
S+LI + G+ A +L + + I+ ++++S+L+ A +A +LY+
Sbjct: 293 VFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 352
Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
M + P + T ++LI C D+L + + M S PN +TYS L+ +
Sbjct: 353 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAK 412
Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII 408
VE G+ L + + G++ N V + +I
Sbjct: 413 RVEEGMELFREMSQRGLVGNTVTYTTLI 440
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 165/377 (43%), Gaps = 17/377 (4%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
N L ++G I + LL+ ME KG ++ D V Y+ +CK K + +A F + N
Sbjct: 231 NGLCKRGDIDLALSLLKKME-KGKIEADVVIYNTIIDGLCK-YKHMDDALNLFTEMDNKG 288
Query: 90 --PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
P + T++ L+S + A ++L + E + + ++ LI K GK+
Sbjct: 289 IRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAE 348
Query: 144 ---DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
D M + ++ PD +++LI +D A + M ++ P+ +T L+K
Sbjct: 349 KLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK--DCFPNVVTYSTLIK 406
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
A +V+ E+++ + + + G YT I+ Q D + A V+ M GV P
Sbjct: 407 GFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHP 466
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
+ + + L+D GK+ A + + + + I +Y+ ++ A + EL+
Sbjct: 467 NILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELF 526
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
++ + P V N +I+ C + +L MK G PN+ TY+ L+ A R
Sbjct: 527 CNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRD 586
Query: 380 DDVEVGLMLLSQAKEDG 396
D E L+ + + G
Sbjct: 587 GDREASAELIKEMRSCG 603
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 96/237 (40%), Gaps = 12/237 (5%)
Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
A ++ DM K P V + L+ K E + ++ + GIS + +YS +
Sbjct: 67 AVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFIN 126
Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
AL + M + +P + T+++L+ C ++ + ++ M +G P
Sbjct: 127 CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKP 186
Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 413
+T T++ L+ + + L+ Q + G P+LV + ++ G+C R
Sbjct: 187 DTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLL 246
Query: 414 -RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
+ EK + + V+ + K AL ++ E G P V S ++ CL
Sbjct: 247 KKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCL 303
Score = 59.7 bits (143), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 64/325 (19%), Positives = 136/325 (41%), Gaps = 34/325 (10%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
+++G++ E L ++M ++ + D D ++ N + EA F+L+ + P
Sbjct: 338 FVKEGKLVEAEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 396
Query: 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
+ T++ L+ +K E ++ R + + GL + YTTLI ++ D
Sbjct: 397 NVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNA---- 452
Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
++VF +++ V P+ +T L+ G++ +A
Sbjct: 453 ---QMVFKQMVSV----------------------GVHPNILTYNILLDGLCKNGKLAKA 487
Query: 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270
V++ + + ++ Y I I + G E ++ +++ KGV P+ + + +I
Sbjct: 488 MVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISG 547
Query: 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330
G E A +L++ K G +Y++L+ A + + + EL + M+S
Sbjct: 548 FCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGD 607
Query: 331 VSTMNALITALCDGDQLPKTMEVLS 355
ST+ + L DG +++LS
Sbjct: 608 ASTIGLVTNMLHDGRLDKSFLDMLS 632
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/396 (22%), Positives = 170/396 (42%), Gaps = 12/396 (3%)
Query: 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP- 88
H L R RI DM R + ++ +CK K +K+A F ++
Sbjct: 195 HILTLLSRLNRIENAWVFYADMYRMEIKSNVYTFNIMINVLCKEGK-LKKAKGFLGIMEV 253
Query: 89 ---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
PT+ T+N L+ + EGA ++ ++ G + D + Y +++ G+
Sbjct: 254 FGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRASE 313
Query: 146 MFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
+ +K PD V +N LI C +G ++ AF EM + + P T L+
Sbjct: 314 VLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQ--GMVPTFYTYNTLIHG 371
Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
+++ A + + I + I Y I IN Q GD + A +++D+M G+ P
Sbjct: 372 LFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPT 431
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
+ ++LI K A E+ ++ +G+ ++ ++LM N +A L +
Sbjct: 432 QFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLK 491
Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
M + + P T N L+ LC + + E++ +MK G+ P+ I+Y+ L+ +K
Sbjct: 492 EMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKG 551
Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYE 416
D + M+ + G P L+ + ++ S+ E
Sbjct: 552 DTKHAFMVRDEMLSLGFNPTLLTYNALLKGLSKNQE 587
Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/365 (24%), Positives = 164/365 (44%), Gaps = 20/365 (5%)
Query: 31 SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK- 85
+YN L++ +GRI ++ +M+ KG + Y+ +C +A E R K
Sbjct: 262 TYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGRA-SEVLREMKE 320
Query: 86 --LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
LVP+ ++N+L+ C+++ D E AF + + G+ Y TLI K+
Sbjct: 321 IGLVPDSV--SYNILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKI 378
Query: 144 DA---MFENVKP-----DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
+A + ++ D V +N LI Q G +AF + EM + + P T
Sbjct: 379 EAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTD--GIQPTQFTYT 436
Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
+L+ + A E+++ + +K + ++ G+ + A S+ +M
Sbjct: 437 SLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMM 496
Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
+ PD+V + L+ GK E A E++ E K +GI ISY++L+ S + + A
Sbjct: 497 SINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHA 556
Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
+ + M S+ PT+ T NAL+ L + E+L +MKS G+ PN ++ ++ A
Sbjct: 557 FMVRDEMLSLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEA 616
Query: 376 CERKD 380
D
Sbjct: 617 MSNLD 621
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 87/376 (23%), Positives = 157/376 (41%), Gaps = 36/376 (9%)
Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
++F+ L+ C Q VD A + M + P T ++ + +++ A Y
Sbjct: 156 ILFDLLVRCCCQLRMVDEAIECFYLMKEK--GFYPKTETCNHILTLLSRLNRIENAWVFY 213
Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
+++ IK + I IN + G + A M G+ P V + L+
Sbjct: 214 ADMYRMEIKSNVYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLR 273
Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
G++E A I+ E K++G + +Y+ ++ N +A E+ MK I L P +
Sbjct: 274 GRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEG---RASEVLREMKEIGLVPDSVSY 330
Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
N LI + L +M G+ P TY+ L+ ++ +E +L+ + +E
Sbjct: 331 NILIRGCSNNGDLEMAFAYRDEMVKQGMVPTFYTYNTLIHGLFMENKIEAAEILIREIRE 390
Query: 395 DGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIV 452
G++ + V + +I G C +KA L++ +++ G + +TSL ++ R+
Sbjct: 391 KGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMT--DGIQPTQFTYTSLIYVLCRK--- 445
Query: 453 AGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDG---FGEYDP 509
T E+ KV+G G+ D + + +L+DG G D
Sbjct: 446 NKTREADELFEKVVG-----------------KGMKPDLVM---MNTLMDGHCAIGNMD- 484
Query: 510 RAFSLLEEAASFGIVP 525
RAFSLL+E I P
Sbjct: 485 RAFSLLKEMDMMSINP 500
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 94/396 (23%), Positives = 183/396 (46%), Gaps = 21/396 (5%)
Query: 31 SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
+YN LI G E +++ + M G+ D V H + KS + +A +F+L
Sbjct: 215 TYNNLINACGSSGNWREALEVCKKMTDNGV-GPDLVTHNIVLSAYKSGRQYSKALSYFEL 273
Query: 87 VP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQE--AGLKADCKLYTTLITTCAKS 140
+ P +TFN+++ + S A + ++E A + D +T+++ +
Sbjct: 274 MKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVK 333
Query: 141 GKVD---AMFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
G+++ A+FE +KP+ V +NAL+ A G A VL ++ + + PD +
Sbjct: 334 GEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQ--NGIIPDVV 391
Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
+ L+ + + Q +A+EV+ M+ K K Y I+ G A ++ M
Sbjct: 392 SYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQM 451
Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
+ G+ P+ V + L+ + K +L A+++GI++ +Y+S +G+ NA
Sbjct: 452 EQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAEL 511
Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
+KA+ LY+ M+ K+K T LI+ C + P+ + L +M+ L + YS +
Sbjct: 512 EKAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSV 571
Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
L A ++ V + +Q K G P+++ + ++
Sbjct: 572 LCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSML 607
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 147/330 (44%), Gaps = 47/330 (14%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDA 145
P+ ST+N L++ C SS + A +V + + + G+ D + ++ + KSG K +
Sbjct: 211 PSRSTYNNLINACGSSGNWREALEVCKKMTDNGVGPDLVTH-NIVLSAYKSGRQYSKALS 269
Query: 146 MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
FE V+PD FN +I + G +A D+ M + PD +T ++M
Sbjct: 270 YFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIM-- 327
Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
H Y++KG E NC +V++ M +G+ P+
Sbjct: 328 -----------------HLYSVKGEIE------NC----------RAVFEAMVAEGLKPN 354
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
V +AL+ G A +L + K GI ++SY+ L+ + ++ KA E++
Sbjct: 355 IVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFL 414
Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER-K 379
M+ + KP V T NALI A L + +E+ M+ G+ PN ++ LL AC R K
Sbjct: 415 MMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSK 474
Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
V V +LS A+ G+ N + IG
Sbjct: 475 KKVNVD-TVLSAAQSRGINLNTAAYNSAIG 503
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/374 (23%), Positives = 164/374 (43%), Gaps = 25/374 (6%)
Query: 81 FRFFKLVPNPTLST--FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCA 138
F++ K+ N +NM++ + A + A + +Q+ K D + Y LI
Sbjct: 130 FKWMKIQKNYCARNDIYNMMIRLHARHNWVDQARGLFFEMQKWSCKPDAETYDALINAHG 189
Query: 139 KSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
++G+ D + + P R +N LI ACG SG A +V +M + V PD
Sbjct: 190 RAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNWREALEVCKKMTD--NGVGPD 247
Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
+T ++ A + Q +A ++++ ++ + I I C S+ G A +++
Sbjct: 248 LVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFN 307
Query: 251 DMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
M +K PD V ++++ G++E + + +G+ I+SY++LMGA +
Sbjct: 308 SMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAV 367
Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
AL + +K + P V + L+ + Q K EV M+ PN +T
Sbjct: 368 HGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVT 427
Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK----------- 417
Y+ L+ A + + + Q ++DG+ PN+V ++ CSR +K
Sbjct: 428 YNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQ 487
Query: 418 ARTLNEHVLSFNSG 431
+R +N + ++NS
Sbjct: 488 SRGINLNTAAYNSA 501
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/297 (21%), Positives = 129/297 (43%), Gaps = 38/297 (12%)
Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREV 213
R F LI + G ++ +V M + + + I +++ A VD+AR +
Sbjct: 107 RKNFPVLIRELSRRGCIELCVNVFKWMKIQKNYCARNDI-YNMMIRLHARHNWVDQARGL 165
Query: 214 YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273
+ + K++ K E Y IN + G W +A ++ DDM + + P + LI+ G
Sbjct: 166 FFEMQKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGS 225
Query: 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333
+G A E+ ++ + G+ +++++ ++ A + + + KAL +E MK K++P +T
Sbjct: 226 SGNWREALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTT 285
Query: 334 MNALITALCDGDQLPKTMEVLSDMK----------------------------------- 358
N +I L Q + +++ + M+
Sbjct: 286 FNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEA 345
Query: 359 --SLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
+ GL PN ++Y+ L+ A L +L K++G+IP++V + C++ R
Sbjct: 346 MVAEGLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGR 402
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 79/397 (19%), Positives = 162/397 (40%), Gaps = 18/397 (4%)
Query: 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
L+SY R + G+ E ++ RK + V + + S + EA F+ +
Sbjct: 397 LNSYGRSRQPGKAKEVFLMMRKERRKP----NVVTYNALIDAYGSNGFLAEAVEIFRQME 452
Query: 89 N----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
P + + L++ C+ SK VL Q G+ + Y + I + + +++
Sbjct: 453 QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELE 512
Query: 145 ---AMFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
A++++ VK D V F LI+ + A L EM P+ + +
Sbjct: 513 KAIALYQSMRKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKE--VYSS 570
Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
++ A + GQV A ++ + + YT ++ + + W AC ++ +M G
Sbjct: 571 VLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANG 630
Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
+ PD + SAL+ G+ F ++ + + I + + AC+ + W++A+
Sbjct: 631 IEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEWKRAI 690
Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
+L + M ++ N ++ ++ M++ + + G+ N TY+ILL
Sbjct: 691 DLIQMMDPYLPSLSIGLTNQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHL 750
Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
+ + +L G+ P+ M++ II R
Sbjct: 751 LAVGNWRKYIEVLEWMSGAGIQPSNQMYRDIISFGER 787
Score = 38.5 bits (88), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 104/267 (38%), Gaps = 23/267 (8%)
Query: 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTL 92
R + E I L++ME + +VY + K Q + EA F + P +
Sbjct: 542 RMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSK-QGQVTEAESIFNQMKMAGCEPDV 600
Query: 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDA 145
+ ++ +S+ A ++ ++ G++ D + L+ K G+ +D
Sbjct: 601 IAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMDL 660
Query: 146 MFENVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG---ALMKAC 201
M E P VF + +AC RA D++ M+ P P ++IG ++
Sbjct: 661 MREKEIPFTGAVFFEIFSACNTLQEWKRAIDLIQMMD----PYLPS-LSIGLTNQMLHLF 715
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
+G+V+ +++ I + + Y I + G+W V + M+ G+ P
Sbjct: 716 GKSGKVEAMMKLFYKIIASGVGINLKTYAILLEHLLAVGNWRKYIEVLEWMSGAGIQPSN 775
Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAK 288
+I F + +E FE L K
Sbjct: 776 QMYRDIISFGERSAGIE--FEPLIRQK 800
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 147/314 (46%), Gaps = 18/314 (5%)
Query: 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP--------DRVV 156
SK E FQ L G D + L+ ++GK+D F K DRV
Sbjct: 500 SKALELWFQFL----NKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVS 555
Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
+N LI+ C +D AF L EM + PD+ T L+ N +V+ A + +
Sbjct: 556 YNTLISGCCGKKKLDEAFMFLDEMVK--RGLKPDNYTYSILICGLFNMNKVEEAIQFWDD 613
Query: 217 IHKYNIKGTPEVYT--IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
+ + P+VYT + I+ C + E +D+M K V P+ V + LI +
Sbjct: 614 CKRNGM--LPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRS 671
Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
G++ A E+ ++ K++GIS +Y+SL+ S ++A L+E M+ L+P V
Sbjct: 672 GRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHY 731
Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
ALI Q+ K +L +M S + PN ITY++++ R +V LL++ +E
Sbjct: 732 TALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMRE 791
Query: 395 DGVIPNLVMFKCII 408
G++P+ + +K I
Sbjct: 792 KGIVPDSITYKEFI 805
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/385 (23%), Positives = 163/385 (42%), Gaps = 13/385 (3%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHA---RFFNVCKSQKAIKEAFRFFKLVPNPT 91
L R RI + +L++M +KG VY+ F KAI+ + T
Sbjct: 353 LTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLT 412
Query: 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA------ 145
ST+N L+ + ++ A ++L+ + G + +T++I D+
Sbjct: 413 SSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVG 472
Query: 146 --MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
+ N+ P + LI+ + G +A ++ + + VD T AL+
Sbjct: 473 EMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTR--TSNALLHGLCE 530
Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
AG++D A + K I Y I+ C + A D+M K+G+ PD
Sbjct: 531 AGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYT 590
Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
S LI + KVE A + + K G+ + +YS ++ C A+ ++ E ++ M
Sbjct: 591 YSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMM 650
Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
S ++P N LI A C +L +E+ DMK G+ PN+ TY+ L+ VE
Sbjct: 651 SKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVE 710
Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII 408
+L + + +G+ PN+ + +I
Sbjct: 711 EAKLLFEEMRMEGLEPNVFHYTALI 735
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 98/496 (19%), Positives = 198/496 (39%), Gaps = 28/496 (5%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----P 90
L+R +C + D+ KG+ ++ CK K ++EA + F + P
Sbjct: 249 LVRANEFQKCCEAF-DVVCKGVSPDVYLFTTAINAFCKGGK-VEEAVKLFSKMEEAGVAP 306
Query: 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV-DAMF-- 147
+ TFN ++ + AF + E G++ Y+ L+ ++ ++ DA F
Sbjct: 307 NVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVL 366
Query: 148 -----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
+ P+ +V+N LI + ++G++++A ++ M ++ + T L+K
Sbjct: 367 KEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSS--TYNTLIKGYC 424
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
GQ D A + K + +T I ++ A +M + + P
Sbjct: 425 KNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGG 484
Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
L+ LI GK A E+ + N+G V + ++L+ A +A + + +
Sbjct: 485 LLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEI 544
Query: 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382
+ N LI+ C +L + L +M GL P+ TYSIL+ + V
Sbjct: 545 LGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKV 604
Query: 383 EVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSG--------- 431
E + K +G++P++ + +I C + R E+ + + ++S N
Sbjct: 605 EEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHL 664
Query: 432 -RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSAD 490
R + S+AL + + G P + ++ + + + + L E + +
Sbjct: 665 IRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGL 724
Query: 491 ALKRSNLCSLIDGFGE 506
+ +LIDG+G+
Sbjct: 725 EPNVFHYTALIDGYGK 740
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/316 (22%), Positives = 137/316 (43%), Gaps = 15/316 (4%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS- 93
L + G+ S+ ++L KG + + +A +C++ K + EAFR K +
Sbjct: 493 LCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGK-LDEAFRIQKEILGRGCVM 551
Query: 94 ---TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-- 148
++N L+S C K + AF L + + GLK D Y+ LI KV+ +
Sbjct: 552 DRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFW 611
Query: 149 ------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
+ PD ++ +I C ++ + + EM ++ V P+ + L++A
Sbjct: 612 DDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSK--NVQPNTVVYNHLIRAYC 669
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
+G++ A E+ + + I YT I S E A ++++M +G+ P+
Sbjct: 670 RSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVF 729
Query: 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322
+ALID G G++ +L+E ++ + I+Y+ ++G + N +A L M
Sbjct: 730 HYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEM 789
Query: 323 KSIKLKPTVSTMNALI 338
+ + P T I
Sbjct: 790 REKGIVPDSITYKEFI 805
Score = 73.2 bits (178), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 155/383 (40%), Gaps = 22/383 (5%)
Query: 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFN 96
+S C D E++ RK + +VY +F + A F ++ N P+ +T N
Sbjct: 191 LSLCFD--EEIRRKMSDLLIEVYCTQF-----KRDGCYLALDVFPVLANKGMFPSKTTCN 243
Query: 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------- 148
+L++ + + + + +V + G+ D L+TT I K GKV+ +
Sbjct: 244 ILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEA 302
Query: 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208
V P+ V FN +I G G D AF + E E ++P IT L+K A ++
Sbjct: 303 GVAPNVVTFNTVIDGLGMCGRYDEAF-MFKEKMVE-RGMEPTLITYSILVKGLTRAKRIG 360
Query: 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268
A V K + K VY I+ + G A + D M KG+ + LI
Sbjct: 361 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 420
Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
G+ + A +L+E + G +V S++S++ + + AL M +
Sbjct: 421 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 480
Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLML 388
P + LI+ LC + K +E+ + G +T T + LL ++ +
Sbjct: 481 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRI 540
Query: 389 LSQAKEDGVIPNLVMFKCIIGMC 411
+ G + + V + +I C
Sbjct: 541 QKEILGRGCVMDRVSYNTLISGC 563
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 121/293 (41%), Gaps = 46/293 (15%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
L G++ E + +++ +G + MD+V + + C +K + EAF F K P
Sbjct: 528 LCEAGKLDEAFRIQKEILGRGCV-MDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKP 586
Query: 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA----- 145
T+++L+ + E A Q + G+ D Y+ +I C K+ + +
Sbjct: 587 DNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFF 646
Query: 146 ---MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE-VHP--------------- 186
M +NV+P+ VV+N LI A +SG + A ++ +M + + P
Sbjct: 647 DEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSII 706
Query: 187 -----------------VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
++P+ AL+ GQ+ + + + +H N+ Y
Sbjct: 707 SRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITY 766
Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282
T+ I ++ G+ A + ++M +KG++PD + I G V AF+
Sbjct: 767 TVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQGGVLEAFK 819
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 52/194 (26%)
Query: 32 YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
YN LIR GR+S ++L EDM+ KG+
Sbjct: 661 YNHLIRAYCRSGRLSMALELREDMKHKGI------------------------------- 689
Query: 88 PNPTLSTFNML---MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG--- 141
+P +T+ L MS+ + ++++ F+ +R+ GL+ + YT LI K G
Sbjct: 690 -SPNSATYTSLIKGMSIISRVEEAKLLFEEMRM---EGLEPNVFHYTALIDGYGKLGQMV 745
Query: 142 KVDAMF-----ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
KV+ + +NV P+++ + +I + G V A +L EM + + PD IT
Sbjct: 746 KVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREK--GIVPDSITYKE 803
Query: 197 LMKACANAGQVDRA 210
+ G V A
Sbjct: 804 FIYGYLKQGGVLEA 817
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 114/484 (23%), Positives = 191/484 (39%), Gaps = 77/484 (15%)
Query: 18 HANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHAR----------- 66
++++A + E + +++R G + E LE+M VYH
Sbjct: 95 NSSFALEDVESNNHLRQMVRTGELEEGFKFLENM----------VYHGNVPDIIPCTTLI 144
Query: 67 --FFNVCKSQKAIK--EAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG 122
F + K++KA K E VP+ + T+N+++S + + A VL
Sbjct: 145 RGFCRLGKTRKAAKILEILEGSGAVPD--VITYNVMISGYCKAGEINNALSVL---DRMS 199
Query: 123 LKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAF 174
+ D Y T++ + SGK+ E + PD + + LI A + V A
Sbjct: 200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259
Query: 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
+L EM PD +T L+ G++D A + + + + I +
Sbjct: 260 KLLDEMRD--RGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317
Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
TG W A + DM +KG P V + LI+F G + A +IL++ G
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377
Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
+SY+ L+ K +A+E E M S P + T N ++TALC ++ +E+L
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 355 SDMKSLG-----------------------------------LCPNTITYSILLVACERK 379
+ + S G L P+TITYS L+ R+
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497
Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCI-IGMCSRRYEKARTLNEHVLSFNSGRPQIENK 438
V+ + + + G+ PN V F I +G+C R + R ++ V N G E
Sbjct: 498 GKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSR-QTDRAIDFLVFMINRGCKPNETS 556
Query: 439 WTSL 442
+T L
Sbjct: 557 YTIL 560
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/416 (22%), Positives = 175/416 (42%), Gaps = 47/416 (11%)
Query: 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFN 96
R G+ + +LE +E G + Y+ CK+ + ++ +P + T+N
Sbjct: 149 RLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYN 208
Query: 97 -MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-TTCAKSGKVDAMF------- 147
+L S+C S K + A +VL + + D YT LI TC SG AM
Sbjct: 209 TILRSLCDSGKLKQ-AMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRD 267
Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEM-------NAEVHPV------------- 187
PD V +N L+ + G +D A L +M N H +
Sbjct: 268 RGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMD 327
Query: 188 -------------DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234
P +T L+ G + RA ++ + + ++ + Y ++
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLH 387
Query: 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294
+ + A + M +G PD V + ++ GKVE A EIL + ++G S
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSP 447
Query: 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354
+I+Y++++ + A KA++L + M++ LKP T ++L+ L ++ + ++
Sbjct: 448 VLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFF 507
Query: 355 SDMKSLGLCPNTITY-SILLVACE-RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
+ + +G+ PN +T+ SI+L C+ R+ D + ++ + G PN + +I
Sbjct: 508 HEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINR--GCKPNETSYTILI 561
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/355 (25%), Positives = 160/355 (45%), Gaps = 14/355 (3%)
Query: 82 RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
+ KL P + T N L++ C ++ S+ V ++V E G K D +TTLI
Sbjct: 138 KMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMV-EMGYKPDTVTFTTLIHGLFLH 196
Query: 141 GK-------VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
K +D M + +PD V + A++ + G D A ++L +M E ++ + +
Sbjct: 197 NKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKM--EAAKIEANVV 254
Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
++ + D A ++ + ++ Y+ I+C G W A + DM
Sbjct: 255 IYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDM 314
Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
++ + P+ V SALID GK+ A ++ +E + I I +YSSL+
Sbjct: 315 IERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRL 374
Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
+A ++ E M P V T N LI C ++ K ME+ +M GL NT+TY+ L
Sbjct: 375 GEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTL 434
Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
+ + D + M+ Q GV PN++ + ++ G+C + KA + E++
Sbjct: 435 IHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 489
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 112/259 (43%), Gaps = 5/259 (1%)
Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
+D A + M A+ P P I L+ A A + D + + I Y
Sbjct: 59 LDDAIGLFGVM-AQSRPF-PSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTY 116
Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
I INC + A ++ M K G PD V L++L++ H ++ A ++ +
Sbjct: 117 NILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVE 176
Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
G +++++L+ +A+ L + M +P + T A++ LC
Sbjct: 177 MGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDL 236
Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
+ +L+ M++ + N + YS ++ + + + L L ++ + GV PN++ + +I
Sbjct: 237 ALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS 296
Query: 410 -MCS--RRYEKARTLNEHV 425
+C+ R + +R L++ +
Sbjct: 297 CLCNYGRWSDASRLLSDMI 315
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 124/293 (42%), Gaps = 15/293 (5%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
N L ++G ++LL ME + +Y ++CK + +A F + N
Sbjct: 226 NGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHE-DDALNLFTEMENKGV 284
Query: 90 -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---DA 145
P + T++ L+S + A ++L + E + + ++ LI K GK+ +
Sbjct: 285 RPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEK 344
Query: 146 MFE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
++E ++ P+ +++LI + A +L M + P+ +T L+
Sbjct: 345 LYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRK--DCLPNVVTYNTLING 402
Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
A +VD+ E+++ + + + G YT I+ Q D + A V+ M GV P+
Sbjct: 403 FCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 462
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
+ + L+D GK+ A + + + + I +Y+ ++ A W+
Sbjct: 463 ILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWK 515
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 133/560 (23%), Positives = 243/560 (43%), Gaps = 46/560 (8%)
Query: 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---- 87
++ LI G + E I M+R + + + K K + RFFK +
Sbjct: 199 FSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKT-DDVKRFFKDMIGAG 257
Query: 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--- 144
PT+ T+N+++ D E A + ++ GL D Y ++I K G++D
Sbjct: 258 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 317
Query: 145 AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
FE +K PD + +NALI + G + + EM + + P+ ++ L+
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKG--NGLKPNVVSYSTLVD 375
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
A G + +A + Y + + + YT I+ + G+ A + ++M + GV
Sbjct: 376 AFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEW 435
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
+ V +ALID A +++ A E+ + G+ + SY++L+ AKN +ALEL
Sbjct: 436 NVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELL 495
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
+K +KP + I LC +++ V+++MK G+ N++ Y+ L+ A +
Sbjct: 496 NELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKS 555
Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRY-EKA-----RTLNEHVLSFNSG- 431
+ GL LL + KE + +V F +I G+C + KA R N+ L N+
Sbjct: 556 GNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAI 615
Query: 432 -----RPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNA----DIRERLV 482
++ A ++ + + G +P + ++ N +R+++
Sbjct: 616 FTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMA 675
Query: 483 ENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP----CVSF----KEI 532
E +G+ D L + SL+ G + +A S LEE GI P C+S E+
Sbjct: 676 E-IGMKLDLLAYT---SLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYEL 731
Query: 533 PVVVDARKLEIHTAKVYLLT 552
+ +A +L+ + K LLT
Sbjct: 732 GCIDEAVELQSYLMKHQLLT 751
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/301 (26%), Positives = 141/301 (46%), Gaps = 16/301 (5%)
Query: 124 KADCKLYTTLITTCAKSGKVDAMFENV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182
KADC ++ L +T NV P VF+AL + G ++ A ++M
Sbjct: 172 KADCDVFDVLWST-----------RNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKR 220
Query: 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242
V P + L+ A G+ D + +K + + T Y I I+C + GD
Sbjct: 221 --FRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDV 278
Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
E A ++++M +G++PD V +++ID G G+++ +E K+ +I+Y++L
Sbjct: 279 EAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNAL 338
Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
+ LE Y MK LKP V + + L+ A C + + ++ DM+ +GL
Sbjct: 339 INCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 398
Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKART 420
PN TY+ L+ A + ++ L ++ + GV N+V + +I G+C + R ++A
Sbjct: 399 VPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEE 458
Query: 421 L 421
L
Sbjct: 459 L 459
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 143/317 (45%), Gaps = 20/317 (6%)
Query: 30 HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
++Y LI + G +S+ L +M + G+ Y A +C +++ +KEA F
Sbjct: 403 YTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAER-MKEAEELFG 461
Query: 86 LVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
+ P L+++N L+ +K+ + A ++L ++ G+K D LY T I
Sbjct: 462 KMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLE 521
Query: 142 KVDA----MFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
K++A M E +K + +++ L+ A +SG +L EM ++ +T
Sbjct: 522 KIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKE--LDIEVTVVT 579
Query: 194 IGALMKACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
L+ V +A + + I + + ++ ++T I+ + E A ++++ M
Sbjct: 580 FCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQM 639
Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
+KG++PD ++L+D G V A + + G+ + +++Y+SL+ S+
Sbjct: 640 VQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQL 699
Query: 313 QKALELYEHMKSIKLKP 329
QKA E M + P
Sbjct: 700 QKARSFLEEMIGEGIHP 716
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 158/393 (40%), Gaps = 63/393 (16%)
Query: 31 SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF-- 84
+YN LI + G++ ++ +M+ GL Y CK + +++A +F+
Sbjct: 334 TYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCK-EGMMQQAIKFYVD 392
Query: 85 ----KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
LVPN T+ L+ + AF++ + + G++ + YT LI +
Sbjct: 393 MRRVGLVPNE--YTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDA 450
Query: 141 ----------GKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190
GK+D V P+ +NALI ++ +DRA ++L E+ + PD
Sbjct: 451 ERMKEAEELFGKMDT--AGVIPNLASYNALIHGFVKAKNMDRALELLNELKG--RGIKPD 506
Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG---------- 240
+ G + + +++ A+ V + + IK +YT ++ ++G
Sbjct: 507 LLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLD 566
Query: 241 -----DWEFA----CSVYDDMTKKGVIPDEV-----------------FLSALIDFAGHA 274
D E C + D + K ++ V +A+ID
Sbjct: 567 EMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKD 626
Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
+VEAA + ++ +G+ +Y+SLM N +AL L + M I +K +
Sbjct: 627 NQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAY 686
Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367
+L+ L +QL K L +M G+ P+ +
Sbjct: 687 TSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEV 719
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 98/404 (24%), Positives = 177/404 (43%), Gaps = 19/404 (4%)
Query: 32 YNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF--RFF 84
+N+L+ + + I L E M+R ++ Y+ C+ SQ ++ A +
Sbjct: 88 FNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMM 147
Query: 85 KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-- 142
KL P++ T + L++ K A ++ + E G + D +TTLI K
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 207
Query: 143 -----VDAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
VD M + +P+ V + ++ + G D A ++L +M E ++ D +
Sbjct: 208 EAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM--EAAKIEADVVIFNT 265
Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
++ + VD A ++K + I+ Y+ I+C G W A + DM +K
Sbjct: 266 IIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKK 325
Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
+ P+ V +ALID GK A ++ + + I I +Y+SL+ KA
Sbjct: 326 INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAK 385
Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
+++E M S P V T N LI C ++ E+ +M GL +T+TY+ L+
Sbjct: 386 QMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 445
Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 418
D + + Q DGV P+++ + ++ G+C+ + EKA
Sbjct: 446 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKA 489
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/333 (22%), Positives = 158/333 (47%), Gaps = 12/333 (3%)
Query: 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--------VDAM 146
FN ++ + + A + + ++ G++ + Y++LI+ G+ D +
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322
Query: 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
+ + P+ V FNALI A + G A + +M +DPD T +L+ +
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKR--SIDPDIFTYNSLVNGFCMHDR 380
Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
+D+A+++++ + + Y I ++ E ++ +M+ +G++ D V +
Sbjct: 381 LDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTT 440
Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 325
LI H G + A ++ ++ + G+ I++YS L+ G C+N K +KALE++++M+
Sbjct: 441 LIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK-LEKALEVFDYMQKS 499
Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
++K + +I +C ++ ++ + G+ PN +TY+ ++ K ++
Sbjct: 500 EIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEA 559
Query: 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
LL + KEDG +PN + +I R +KA
Sbjct: 560 YALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKA 592
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/361 (24%), Positives = 156/361 (43%), Gaps = 15/361 (4%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
N L ++G ++LL ME + +++ ++CK + + +A FK +
Sbjct: 233 NGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCK-YRHVDDALNLFKEMETKGI 291
Query: 90 -PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
P + T++ L+S S A Q+L + E + + + LI K GK
Sbjct: 292 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 351
Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
D + ++ PD +N+L+ +D+A + M ++ PD +T L+K
Sbjct: 352 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK--DCFPDVVTYNTLIKG 409
Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
+ +V+ E+++ + + G YT I GD + A V+ M GV PD
Sbjct: 410 FCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPD 469
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
+ S L+D + GK+E A E+ + I + I Y++++ A +L+
Sbjct: 470 IMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFC 529
Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
+ +KP V T N +I+ LC L + +L MK G PN+ TY+ L+ A R
Sbjct: 530 SLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDG 589
Query: 381 D 381
D
Sbjct: 590 D 590
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 149/339 (43%), Gaps = 15/339 (4%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---N 89
+ L + + + ++L ++ME KG+ Y + +C + + ++ N
Sbjct: 268 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 327
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---M 146
P L TFN L+ A ++ + + + D Y +L+ ++D M
Sbjct: 328 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 387
Query: 147 FE-----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
FE + PD V +N LI +S V+ ++ EM+ + D +T L++
Sbjct: 388 FEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHR--GLVGDTVTYTTLIQGL 445
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
+ G D A++V+K + + Y+I ++ G E A V+D M K + D
Sbjct: 446 FHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI 505
Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
+ +I+ AGKV+ +++ +G+ +++Y++++ + + Q+A L +
Sbjct: 506 YIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKK 565
Query: 322 MKSIKLKPTVSTMNALITA-LCDGDQLPKTMEVLSDMKS 359
MK P T N LI A L DGD+ + E++ +M+S
Sbjct: 566 MKEDGPLPNSGTYNTLIRAHLRDGDK-AASAELIREMRS 603
Score = 74.3 bits (181), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 140/337 (41%), Gaps = 23/337 (6%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF----KLVPNP 90
L GR S+ LL DM K + ++A K K + EA + + K +P
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFV-EAEKLYDDMIKRSIDP 363
Query: 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
+ T+N L++ + A Q+ + D Y TLI KS +V+ E
Sbjct: 364 DIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELF 423
Query: 151 KP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
+ D V + LI G D A V +M ++ P PD +T L+
Sbjct: 424 REMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVP--PDIMTYSILLDGLC 481
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD----WEFACSVYDDMTKKGVI 258
N G++++A EV+ + K IK +YT I + G W+ CS ++ KGV
Sbjct: 482 NNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCS----LSLKGVK 537
Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
P+ V + +I ++ A+ +L++ K G +Y++L+ A + + EL
Sbjct: 538 PNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAEL 597
Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
M+S + ST+ + L DG +++LS
Sbjct: 598 IREMRSCRFVGDASTIGLVANMLHDGRLDKSFLDMLS 634
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/283 (20%), Positives = 118/283 (41%), Gaps = 37/283 (13%)
Query: 223 KGTPEVYTIAINCC----------SQTGDW-------------EFACSVYDDMTKKGVIP 259
KG P + +I+ C S +GD+ + A ++ M K +P
Sbjct: 24 KGNPRIAPSSIDLCGMCYWGRAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRPLP 83
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
V + L+ K + + ++ + I G+ +Y+ L+ AL L
Sbjct: 84 SIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALL 143
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
M + +P++ T+++L+ C G ++ + ++ M +G P+TIT++ L+
Sbjct: 144 GKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLH 203
Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-----------RYEKARTLNEHVLS 427
+ + L+ + + G PNLV + ++ G+C R + E A+ + V+
Sbjct: 204 NKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK-IEADVVI 262
Query: 428 FNSGRPQI-ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
FN+ + + + AL +++E G P V S ++ CL
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 305
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/253 (19%), Positives = 109/253 (43%), Gaps = 11/253 (4%)
Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
P + L+ A A + D + + + + I Y I INC + A ++
Sbjct: 83 PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142
Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
M K G P V LS+L++ H ++ A ++ + G I++++L+
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202
Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
+A+ L + M +P + T ++ LC + +L+ M++ + + +
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262
Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG-MCSR-RYEKA-------- 418
++ ++ + + V+ L L + + G+ PN+V + +I +CS R+ A
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322
Query: 419 -RTLNEHVLSFNS 430
+ +N ++++FN+
Sbjct: 323 EKKINPNLVTFNA 335
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 112 bits (281), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 160/359 (44%), Gaps = 49/359 (13%)
Query: 71 CKSQKAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
C+ +A++ R ++ PTL T N L++ +C + K S+ + R+V E G + +
Sbjct: 172 CRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMV-ETGFQPNEVT 230
Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
Y ++ KSG+ E N+K D V ++ +I + G++D AF++ EM
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM- 289
Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
E+ D IT L+ NAG+
Sbjct: 290 -EIKGFKADIITYNTLIGGFCNAGR----------------------------------- 313
Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
W+ + DM K+ + P+ V S LID GK+ A ++L+E +GI+ I+Y+S
Sbjct: 314 WDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNS 373
Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
L+ ++A+++ + M S P + T N LI C +++ +E+ +M G
Sbjct: 374 LIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRG 433
Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKA 418
+ NT+TY+ L+ + +EV L + V P++V +K ++ G+C EKA
Sbjct: 434 VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKA 492
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 145/333 (43%), Gaps = 11/333 (3%)
Query: 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
P PT+ FN L S A +K E + + ++ G+ + +I + K+ F
Sbjct: 84 PLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAF 143
Query: 148 ENV--------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
+ +PD V+FN L+ V A +++ M H P IT+ L+
Sbjct: 144 STMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHK--PTLITLNTLVN 201
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
G+V A + + + + Y +N ++G A + M ++ +
Sbjct: 202 GLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL 261
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
D V S +ID G ++ AF + E + +G II+Y++L+G NA W +L
Sbjct: 262 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLL 321
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
M K+ P V T + LI + +L + ++L +M G+ PNTITY+ L+ ++
Sbjct: 322 RDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKE 381
Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
+ +E + ++ G P+++ F +I G C
Sbjct: 382 NRLEEAIQMVDLMISKGCDPDIMTFNILINGYC 414
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/393 (22%), Positives = 171/393 (43%), Gaps = 17/393 (4%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
N + + G+ + ++LL ME + + +D V ++ + ++ AF F +
Sbjct: 236 NVMCKSGQTALAMELLRKMEERNI-KLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGF 294
Query: 89 NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
+ T+N L+ C + + +GA ++LR + + + + ++ LI + K GK+
Sbjct: 295 KADIITYNTLIGGFCNAGRWDDGA-KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREAD 353
Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
+ M + P+ + +N+LI + ++ A ++ M ++ DPD +T L+
Sbjct: 354 QLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISK--GCDPDIMTFNILIN 411
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
A ++D E+++ + + Y + Q+G E A ++ +M + V P
Sbjct: 412 GYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP 471
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
D V L+D G++E A EI + + + + I Y ++ NA A +L+
Sbjct: 472 DIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF 531
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
+ +K N +I+ LC D L K + M G P+ +TY+IL+ A
Sbjct: 532 CSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGD 591
Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
DD L+ + K G ++ K +I M S
Sbjct: 592 DDATTAAELIEEMKSSGFPADVSTVKMVINMLS 624
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/340 (21%), Positives = 149/340 (43%), Gaps = 52/340 (15%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
+ +++G++ E LL++M ++G+ Y++ CK + ++EA + L+
Sbjct: 341 DSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENR-LEEAIQMVDLMISKGC 399
Query: 89 NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-- 145
+P + TFN+L++ C +++ +G ++ R + G+ A+ Y TL+ +SGK++
Sbjct: 400 DPDIMTFNILINGYCKANRIDDG-LELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAK 458
Query: 146 -MFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
+F+ V+PD V + L+ +G +++A ++ ++ +D I ++
Sbjct: 459 KLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMI--IIH 516
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
NA +VD A +++ + +K Y I I+ + A ++ MT++G P
Sbjct: 517 GMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAP 576
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
DE+ + LI H G +A A EL
Sbjct: 577 DELTYNILI--RAHLGDDDAT---------------------------------TAAELI 601
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359
E MKS VST+ +I L G+ +++LS ++
Sbjct: 602 EEMKSSGFPADVSTVKMVINMLSSGELDKSFLDMLSTTRA 641
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 100/240 (41%), Gaps = 4/240 (1%)
Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
D A D+ +M + P+ P I L A A Q + + K + I + +
Sbjct: 70 DDAVDLFRDM-IQSRPL-PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLS 127
Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
I INC + +A S + K G PD V + L++ +V A E++
Sbjct: 128 IMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEM 187
Query: 291 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
G +I+ ++L+ G C N K A+ L + M +P T ++ +C Q
Sbjct: 188 GHKPTLITLNTLVNGLCLNGK-VSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTAL 246
Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
ME+L M+ + + + YSI++ + ++ L ++ + G +++ + +IG
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIG 306
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/387 (25%), Positives = 169/387 (43%), Gaps = 16/387 (4%)
Query: 35 LIRQGRISECIDLLEDME-RKGLLDM---DKVYHARFFNVCKSQKAIKEAFRFFKLVPNP 90
L R+ + S LL+ + ++ LLD+ + HA + K +KAI R ++ P+P
Sbjct: 185 LGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHA-YSRTGKYEKAIDLFERMKEMGPSP 243
Query: 91 TLSTFNMLMSVCAS-SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
TL T+N+++ V + VL ++ GLK D +T+++ CA+ G +
Sbjct: 244 TLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEF 303
Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
F +K P V +NAL+ G++G A VL EM P D +T L+ A
Sbjct: 304 FAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPA--DSVTYNELVAAY 361
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
AG A V +M+ K + YT I+ + G + A ++ M + G +P+
Sbjct: 362 VRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNT 421
Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
+A++ G + ++L + K+ G S ++++++ C N + ++
Sbjct: 422 CTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFRE 481
Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381
MKS +P T N LI+A ++ +M G TY+ LL A RK D
Sbjct: 482 MKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGD 541
Query: 382 VEVGLMLLSQAKEDGVIPNLVMFKCII 408
G ++S K G P + ++
Sbjct: 542 WRSGENVISDMKSKGFKPTETSYSLML 568
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 97/446 (21%), Positives = 180/446 (40%), Gaps = 61/446 (13%)
Query: 26 SEQLHSYNRLI----RQGR-ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
S L +YN ++ + GR + + +L++M KGL D+ + + C + ++EA
Sbjct: 242 SPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGL-KFDEFTCSTVLSACAREGLLREA 300
Query: 81 FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
FF + + P T+N L+ V + A VL+ ++E AD Y L+
Sbjct: 301 KEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAA 360
Query: 137 CAKSG-------KVDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
++G ++ M + V P+ + + +I A G++G D A + M E V
Sbjct: 361 YVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMK-EAGCV- 418
Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPE--VYTIAINCCSQTGDWEFA 245
P+ T A++ G+ R+ E+ KM+ G +P + + C G +F
Sbjct: 419 PNTCTYNAVLSLL---GKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFV 475
Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
V+ +M G PD + LI G G A ++ E G + + +Y++L+ A
Sbjct: 476 NRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNA 535
Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC----------------DGDQLPK 349
+ +W+ + MKS KPT ++ + ++ +G P
Sbjct: 536 LARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPS 595
Query: 350 TM-------------------EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390
M + K G P+ + ++ +L R + + +L
Sbjct: 596 WMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILE 655
Query: 391 QAKEDGVIPNLVMFKCIIGMCSRRYE 416
+EDG+ P+LV + ++ M RR E
Sbjct: 656 SIREDGLSPDLVTYNSLMDMYVRRGE 681
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 137/310 (44%), Gaps = 14/310 (4%)
Query: 126 DCKLYTTLITTCAKSGKVDA---MFENVK-----PDRVVFNALITACGQSGAVDRA-FDV 176
D + YTT++ +++GK + +FE +K P V +N ++ G+ G R V
Sbjct: 209 DVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGV 268
Query: 177 LAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236
L EM ++ + D T ++ ACA G + A+E + + + Y +
Sbjct: 269 LDEMRSK--GLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVF 326
Query: 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296
+ G + A SV +M + D V + L+ AG + A +++ +G+
Sbjct: 327 GKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNA 386
Query: 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356
I+Y++++ A A +AL+L+ MK P T NA+++ L + + +++L D
Sbjct: 387 ITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCD 446
Query: 357 MKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMCSR 413
MKS G PN T++ +L C K + + + K G P+ F +I G C
Sbjct: 447 MKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGS 506
Query: 414 RYEKARTLNE 423
+ ++ E
Sbjct: 507 EVDASKMYGE 516
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 104/464 (22%), Positives = 183/464 (39%), Gaps = 80/464 (17%)
Query: 31 SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
+YN L+ R G E ++E M +KG++ Y K+ K EA + F
Sbjct: 353 TYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKE-DEALKLFYS 411
Query: 87 VPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142
+ P T+N ++S+ S ++L ++ G + + T++ C G
Sbjct: 412 MKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGM 471
Query: 143 ---VDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEM-----NAEVHPVDP 189
V+ +F +K PDR FN LI+A G+ G+ A + EM NA V
Sbjct: 472 DKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGFNACV----- 526
Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW------- 242
T AL+ A A G V + K T Y++ + C ++ G++
Sbjct: 527 --TTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIE 584
Query: 243 ---------------------EFACSV-------YDDMTKKGVIPDEVFLSALIDFAGHA 274
F C + K G PD V ++++
Sbjct: 585 NRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRN 644
Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
+ A IL+ + G+S +++Y+SLM KA E+ + ++ +LKP + +
Sbjct: 645 NMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSY 704
Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-------VACERKDDVEVGLM 387
N +I C + + + +LS+M G+ P TY+ + + E +D +E
Sbjct: 705 NTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIEC--- 761
Query: 388 LLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFN 429
AK D PN + FK ++ G C + +Y +A + +F+
Sbjct: 762 ---MAKND-CRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFD 801
Score = 72.8 bits (177), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 129/298 (43%), Gaps = 9/298 (3%)
Query: 119 QEAGLKADCKLYTTLITTCAKS--GKVDAMFENVKPD--RVVFNALITACGQSGAVDRA- 173
+ LK CK L+ + + + F++VK + R +L+ SG +RA
Sbjct: 97 RNGSLKLLCKKEVVLVNSIVEQPLTGLSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAV 156
Query: 174 --FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
F+ L +++ + DH I ++ Q A ++ I YT
Sbjct: 157 FLFEWLV-LSSNSGALKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTT 215
Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKV-EAAFEILQEAKNQ 290
++ S+TG +E A +++ M + G P V + ++D G G+ +L E +++
Sbjct: 216 ILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSK 275
Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
G+ + S+++ AC+ ++A E + +KS +P T NAL+ +
Sbjct: 276 GLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEA 335
Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
+ VL +M+ +++TY+ L+ A R + ++ + GV+PN + + +I
Sbjct: 336 LSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVI 393
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/286 (18%), Positives = 113/286 (39%), Gaps = 16/286 (5%)
Query: 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK---VDA 145
N ++T+N L++ A D V+ ++ G K Y+ ++ AK G ++
Sbjct: 523 NACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIER 582
Query: 146 MFENVK-----PDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL 197
+ +K P ++ L+ A C +RAF + + H PD + ++
Sbjct: 583 IENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKK-----HGYKPDMVIFNSM 637
Query: 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257
+ D+A + + I + + Y ++ + G+ A + + K +
Sbjct: 638 LSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQL 697
Query: 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317
PD V + +I G ++ A +L E +GI I +Y++ + + + + +
Sbjct: 698 KPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMGMFAEIED 757
Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
+ E M +P T ++ C + + M+ +S +K+ C
Sbjct: 758 VIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPC 803
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/404 (25%), Positives = 186/404 (46%), Gaps = 66/404 (16%)
Query: 31 SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
+YN +++ +GR+S+ +LL DM++ GL+ Y+ + CK ++KEAF+ +L
Sbjct: 242 TYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCK-LGSLKEAFQIVEL 300
Query: 87 VPN----PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
+ P L T+N+L++ +C + EG +++ ++ L+ D Y TLI C + G
Sbjct: 301 MKQTNVLPDLCTYNILINGLCNAGSMREG-LELMDAMKSLKLQPDVVTYNTLIDGCFELG 359
Query: 142 ------KVDAMFEN--VKPDRVVFN-ALITACGQSG--AVDRAFDVLAEMNAEVHPVDPD 190
K+ EN VK ++V N +L C + AV R L +M H PD
Sbjct: 360 LSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDM----HGFSPD 415
Query: 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250
+T L+KA G + A E+ +
Sbjct: 416 IVTYHTLIKAYLKVGDLSGALEMMR----------------------------------- 440
Query: 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310
+M +KG+ + + L+ ++D K++ A +L A +G V ++Y +L+ +
Sbjct: 441 EMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREE 500
Query: 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370
+KALE+++ MK +K+ PTVST N+LI LC + ME ++ GL P+ T++
Sbjct: 501 KVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFN 560
Query: 371 ILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII---GMC 411
+++ ++ VE +++ + P+ + C I G+C
Sbjct: 561 SIILGYCKEGRVEKAFEFYNESIKHSFKPD--NYTCNILLNGLC 602
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 89/365 (24%), Positives = 154/365 (42%), Gaps = 23/365 (6%)
Query: 24 DVSEQLHSYNRLIR----QGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIK 78
+V L +YN LI G + E ++L++ M K L L D V + + C
Sbjct: 305 NVLPDLCTYNILINGLCNAGSMREGLELMDAM--KSLKLQPDVVTYNTLIDGCFELGLSL 362
Query: 79 EAFRFFKLVPNPTLS----TFNM-LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
EA + + + N + T N+ L +C K +V LV G D Y TL
Sbjct: 363 EARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPDIVTYHTL 422
Query: 134 ITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185
I K G + E +K + + N ++ A + +D A ++L +
Sbjct: 423 IKAYLKVGDLSGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGF 482
Query: 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245
VD +T G L+ +V++A E++ + K I T + I G E A
Sbjct: 483 IVD--EVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELA 540
Query: 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305
+D++ + G++PD+ +++I G+VE AFE E+ + + L+
Sbjct: 541 MEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNG 600
Query: 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
+KAL + + + TV T N +I+A C +L + ++LS+M+ GL P+
Sbjct: 601 LCKEGMTEKALNFFNTLIEEREVDTV-TYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPD 659
Query: 366 TITYS 370
TY+
Sbjct: 660 RFTYN 664
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 46/199 (23%)
Query: 245 ACSVYDDMTKKGVI------------------------------------PDEVFLSALI 268
A V+DDM K GV PD V + ++
Sbjct: 188 AREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTIL 247
Query: 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328
G++ E+L + K G+ ++Y++L+ + ++A ++ E MK +
Sbjct: 248 KAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVL 307
Query: 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL-- 386
P + T N LI LC+ + + +E++ MKSL L P+ +TY+ L+ C E+GL
Sbjct: 308 PDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGC-----FELGLSL 362
Query: 387 ---MLLSQAKEDGVIPNLV 402
L+ Q + DGV N V
Sbjct: 363 EARKLMEQMENDGVKANQV 381
Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 105/257 (40%), Gaps = 37/257 (14%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHAR----FFNVCKSQKAIKEAFRFFKLVPNP 90
L ++ ++ E +LL ++G + +D+V + FF K +KA++ K+ P
Sbjct: 461 LCKERKLDEAHNLLNSAHKRGFI-VDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITP 519
Query: 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150
T+STFN L+ +E A + + E+GL
Sbjct: 520 TVSTFNSLIGGLCHHGKTELAMEKFDELAESGLL-------------------------- 553
Query: 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210
PD FN++I + G V++AF+ E + H PD+ T L+ G ++A
Sbjct: 554 -PDDSTFNSIILGYCKEGRVEKAFEFYNE--SIKHSFKPDNYTCNILLNGLCKEGMTEKA 610
Query: 211 REVYK-MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269
+ +I + + Y I+ + + A + +M +KG+ PD ++ I
Sbjct: 611 LNFFNTLIEEREVDTV--TYNTMISAFCKDKKLKEAYDLLSEMEEKGLEPDRFTYNSFIS 668
Query: 270 FAGHAGKVEAAFEILQE 286
GK+ E+L++
Sbjct: 669 LLMEDGKLSETDELLKK 685
Score = 37.7 bits (86), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 315 ALELYEHMKSIKLKPTVSTMNALITALC---DGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
AL++++ M +KLKP + T N L+ L + EV DM +G+ N T+++
Sbjct: 150 ALQIFQKMIRLKLKPNLLTCNTLLIGLVRYPSSFSISSAREVFDDMVKIGVSLNVQTFNV 209
Query: 372 LLVACERKDDVEVGL-MLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
L+ + +E L ML E V P+ V + I+ S++
Sbjct: 210 LVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKK 253
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/408 (24%), Positives = 183/408 (44%), Gaps = 49/408 (12%)
Query: 47 LLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN----PTLSTFNMLM-SV 101
+ +M KG + Y +C +++ I EA F + + PT+ T+ +L+ S+
Sbjct: 275 VFNEMPLKGCRRNEVAYTHLIHGLCVARR-IDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Query: 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPD 153
C S + SE A +++ ++E G+K + YT LI + K + E + P+
Sbjct: 334 CGSERKSE-ALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPN 392
Query: 154 RVVFNALITACGQSGAVDRAFDVLAEMNAE--------------------VHP------- 186
+ +NALI + G ++ A DV+ M + VH
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNK 452
Query: 187 -----VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
V PD +T +L+ +G D A + +++ + YT I+ ++
Sbjct: 453 MLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKR 512
Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
E AC ++D + +KGV P+ V +ALID AGKV+ A +L++ ++ +++++
Sbjct: 513 VEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNA 572
Query: 302 LM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
L+ G C++ K ++A L E M I L+PTVST LI L M S
Sbjct: 573 LIHGLCADGK-LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSS 631
Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
G P+ TY+ + R+ + ++++ +E+GV P+L + +I
Sbjct: 632 GTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLI 679
Score = 106 bits (264), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 96/416 (23%), Positives = 190/416 (45%), Gaps = 35/416 (8%)
Query: 31 SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS--QKAIKEAFRFF 84
+YN LI ++G I + +D++E ME + L + Y+ CKS KA+ +
Sbjct: 395 TYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKML 454
Query: 85 KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144
+ P + T+N L+ S + + A+++L L+ + GL D YT++I + KS +V+
Sbjct: 455 ERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVE 514
Query: 145 A---MFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
+F++ V P+ V++ ALI ++G VD A +L +M ++ P+ +T A
Sbjct: 515 EACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSK--NCLPNSLTFNA 572
Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
L+ G++ A + + + K ++ T TI I+ + GD++ A S + M G
Sbjct: 573 LIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG 632
Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
PD + I G++ A +++ + + G+S + +YSSL+ + A
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAF 692
Query: 317 ELYEHMKSIKLKPTVSTMNALITALCD---GDQ---------------LPKTMEVLSDMK 358
++ + M+ +P+ T +LI L + G Q +E+L M
Sbjct: 693 DVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMV 752
Query: 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQ-AKEDGVIPNLVMFKCIIGMCSR 413
+ PN +Y L++ ++ V + + +G+ P+ ++F ++ C +
Sbjct: 753 EHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCK 808
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 164/351 (46%), Gaps = 15/351 (4%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
P + T+N +++ + E A Q + + EAGL D YT+LI + +D+ F+
Sbjct: 216 PNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKV 275
Query: 149 -NVKP------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
N P + V + LI + +D A D+ +M + P T L+K+
Sbjct: 276 FNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDD--ECFPTVRTYTVLIKSL 333
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
+ + A + K + + IK YT+ I+ +E A + M +KG++P+
Sbjct: 334 CGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNV 393
Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYE 320
+ +ALI+ G +E A ++++ +++ +S +Y+ L+ G C + N KA+ +
Sbjct: 394 ITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS--NVHKAMGVLN 451
Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
M K+ P V T N+LI C +LS M GL P+ TY+ ++ + +
Sbjct: 452 KMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSK 511
Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFN 429
VE L ++ GV PN+VM+ +I G C + + ++A + E +LS N
Sbjct: 512 RVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN 562
Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 135/290 (46%), Gaps = 15/290 (5%)
Query: 130 YTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
Y +L+T +G V +F+ + +I +C G D+ +MN +
Sbjct: 126 YASLLTLLINNGYVGVVFK-------IRLLMIKSCDSVGDALYVLDLCRKMNKDERFELK 178
Query: 190 DHITIG---ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEF 244
+ IG L+ + A G VD ++VY + K P +YT +N + G+ E
Sbjct: 179 YKLIIGCYNTLLNSLARFGLVDEMKQVY--MEMLEDKVCPNIYTYNKMVNGYCKLGNVEE 236
Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
A + + G+ PD ++LI +++AF++ E +G ++Y+ L+
Sbjct: 237 ANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIH 296
Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
A+ +A++L+ MK + PTV T LI +LC ++ + + ++ +M+ G+ P
Sbjct: 297 GLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKP 356
Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
N TY++L+ + + E LL Q E G++PN++ + +I G C R
Sbjct: 357 NIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKR 406
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/325 (23%), Positives = 139/325 (42%), Gaps = 42/325 (12%)
Query: 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216
+N L+ + + G VD V EM + V P+ T ++ G V+ A +
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLED--KVCPNIYTYNKMVNGYCKLGNVEEANQYVSK 243
Query: 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276
I + + YT I Q D + A V+++M KG +EV + LI A +
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR 303
Query: 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336
++ A ++ + K+ + +Y+ L+ + ++ +AL L + M+ +KP + T
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363
Query: 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA-CER----------------- 378
LI +LC + K E+L M GL PN ITY+ L+ C+R
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423
Query: 379 ----------------KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKART 420
K +V + +L++ E V+P++V + +I G C S ++ A
Sbjct: 424 LSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYR 483
Query: 421 LNEHVLSFNSGRPQIENKWTSLALM 445
L LS + R + ++WT +++
Sbjct: 484 L----LSLMNDRGLVPDQWTYTSMI 504
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/303 (20%), Positives = 112/303 (36%), Gaps = 36/303 (11%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
+RL++ G + M G Y C+ + + K+ N
Sbjct: 610 HRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVS 669
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-------------- 135
P L T++ L+ + AF VL+ +++ G + + +LI
Sbjct: 670 PDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSE 729
Query: 136 --TCAKSG--KVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
CA S + D + E +V P+ + LI + G + A V M
Sbjct: 730 PELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRN 789
Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYK-MIHKYNIKGTPEVYTIAINCCS--QTG 240
+ P + AL+ C + + A +V MI + P++ + + C + G
Sbjct: 790 -EGISPSELVFNALLSCCCKLKKHNEAAKVVDDMI---CVGHLPQLESCKVLICGLYKKG 845
Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
+ E SV+ ++ + G DE+ +ID G G VEA +E+ + G +YS
Sbjct: 846 EKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYS 905
Query: 301 SLM 303
L+
Sbjct: 906 LLI 908
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 100/412 (24%), Positives = 173/412 (41%), Gaps = 42/412 (10%)
Query: 25 VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
+S L+SYN LI R+ ++ + +L M + G + D V + N K I EA
Sbjct: 111 ISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGY-EPDIVTLSSLLNGYCHGKRISEA 169
Query: 81 F----RFFKLVPNPTLSTFNMLM-SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
+ F + P TFN L+ + +K SE + R+V
Sbjct: 170 VALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARG-------------- 215
Query: 136 TCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
+PD + ++ + G +D A +L +M E ++ D +
Sbjct: 216 --------------CQPDLFTYGTVVNGLCKRGDIDLALSLLKKM--EKGKIEADVVIYT 259
Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255
++ A N V+ A ++ + I+ Y I C G W A + DM ++
Sbjct: 260 TIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 319
Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
+ P+ V SALID GK+ A ++ E + I I +YSSL+ +A
Sbjct: 320 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 379
Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
++E M S P V T N LI C ++ + ME+ +M GL NT+TY+ L+
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 439
Query: 376 CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
+ D ++ + + DGV P+++ + ++ G+C + EKA + E++
Sbjct: 440 LFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 491
Score = 106 bits (265), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/391 (23%), Positives = 173/391 (44%), Gaps = 36/391 (9%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
N L ++G I + LL+ ME KG ++ D V + + + K + +A F + N
Sbjct: 228 NGLCKRGDIDLALSLLKKME-KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGI 286
Query: 90 -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
P + T+N L+ +C + S+ + RL+ D +
Sbjct: 287 RPNVVTYNSLIRCLCNYGRWSDAS----RLLS------------------------DMIE 318
Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
+ P+ V F+ALI A + G + A + EM +DPD T +L+ ++
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK--RSIDPDIFTYSSLINGFCMHDRL 376
Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
D A+ +++++ + Y I + E ++ +M+++G++ + V + L
Sbjct: 377 DEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTL 436
Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
I AG + A +I ++ + G+ II+YS L+ +KAL ++E+++ K+
Sbjct: 437 IQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKM 496
Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
+P + T N +I +C ++ ++ + G+ PN I Y+ ++ RK E
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 388 LLSQAKEDGVIPNLVMFKCIIGMCSRRYEKA 418
L + KEDG +PN + +I R +KA
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRDGDKA 587
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/387 (23%), Positives = 178/387 (45%), Gaps = 16/387 (4%)
Query: 40 RISECIDLLEDM----ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTF 95
RISE + L++ M + + + + H F + K+ +A+ R P L T+
Sbjct: 165 RISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLH-NKASEAVALIDRMVARGCQPDLFTY 223
Query: 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT-CAKSGKVDAMF------- 147
+++ D + A +L+ +++ ++AD +YTT+I C DA+
Sbjct: 224 GTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDN 283
Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
+ ++P+ V +N+LI G A +L++M ++P+ +T AL+ A G++
Sbjct: 284 KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIE--RKINPNVVTFSALIDAFVKEGKL 341
Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
A ++Y + K +I Y+ IN + A +++ M K P+ V + L
Sbjct: 342 VEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401
Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
I A +VE E+ +E +G+ ++Y++L+ A + A ++++ M S +
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461
Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
P + T + L+ LC +L K + V ++ + P+ TY+I++ + VE G
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521
Query: 388 LLSQAKEDGVIPNLVMFKCII-GMCSR 413
L GV PN++++ +I G C +
Sbjct: 522 LFCSLSLKGVKPNVIIYTTMISGFCRK 548
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 148/342 (43%), Gaps = 21/342 (6%)
Query: 31 SYNRLIR----QGRISECIDLLEDM-ERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF- 84
+YN LIR GR S+ LL DM ERK ++ + V + + + + EA + +
Sbjct: 292 TYNSLIRCLCNYGRWSDASRLLSDMIERK--INPNVVTFSALIDAFVKEGKLVEAEKLYD 349
Query: 85 ---KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
K +P + T++ L++ + A + L+ + Y TLI K+
Sbjct: 350 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 409
Query: 142 KVDAMFENVKP--------DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
+V+ E + + V +N LI Q+G D A + +M ++ P PD IT
Sbjct: 410 RVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVP--PDIIT 467
Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
L+ G++++A V++ + K ++ Y I I + G E ++ ++
Sbjct: 468 YSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLS 527
Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313
KGV P+ + + +I G E A + +E K G +Y++L+ A +
Sbjct: 528 LKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKA 587
Query: 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
+ EL + M+S ST++ +I L DG +E+LS
Sbjct: 588 ASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSYLEMLS 629
Score = 65.9 bits (159), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/272 (20%), Positives = 117/272 (43%), Gaps = 13/272 (4%)
Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
+D A D+ EM + P+ P + L+ A A + D + + + I Y
Sbjct: 61 LDDAVDLFGEM-VQSRPL-PSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSY 118
Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
I INC + A +V M K G PD V LS+L++ H ++ A ++ +
Sbjct: 119 NILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFV 178
Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
+++++L+ +A+ L + M + +P + T ++ LC +
Sbjct: 179 MEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDL 238
Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409
+ +L M+ + + + Y+ ++ A +V L L ++ G+ PN+V + +I
Sbjct: 239 ALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 298
Query: 410 -MCSR-RYEKA---------RTLNEHVLSFNS 430
+C+ R+ A R +N +V++F++
Sbjct: 299 CLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/237 (18%), Positives = 97/237 (40%), Gaps = 12/237 (5%)
Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
A ++ +M + +P V + L+ K + + + +N IS + SY+ L+
Sbjct: 64 AVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILIN 123
Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
AL + M + +P + T+++L+ C G ++ + + ++ M + P
Sbjct: 124 CFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQP 183
Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR---------- 413
NT+T++ L+ + + L+ + G P+L + ++ G+C R
Sbjct: 184 NTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLL 243
Query: 414 -RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL 469
+ EK + + V+ K + AL ++ E G P V + ++ CL
Sbjct: 244 KKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390,
chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
Length = 702
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 103/388 (26%), Positives = 177/388 (45%), Gaps = 34/388 (8%)
Query: 139 KSGKV-DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
KS K+ D M E +KPD F +I+ Q+G RA + +M++ +PD++T+ A
Sbjct: 193 KSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMSS--FGCEPDNVTMAA 250
Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
++ A AG VD A +Y + ++ I +G+++ ++Y++M G
Sbjct: 251 MIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALG 310
Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
V P+ V + LID G A + A I ++ G + +Y++L+ A A+ AL
Sbjct: 311 VKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDAL 370
Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC-PNTITYSILLV- 374
+Y MK L TV N L++ D + + E+ DMK+ C P++ T+S L+
Sbjct: 371 AIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITV 430
Query: 375 -ACE-RKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432
AC R + E L+ Q +E G P L + +I C Y KA+ +++ V +F+
Sbjct: 431 YACSGRVSEAEAALL---QMREAGFEPTLFVLTSVI-QC---YGKAKQVDDVVRTFD--- 480
Query: 433 PQIENKWTSLALMVYREAIVAGTIPTV------EVVSKVLGCLQ--LPYNADIRERLVEN 484
Q+ L L + + G + V E + K++GC++ P + + LVE
Sbjct: 481 -QV------LELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKAKPKLGQVVKMLVEE 533
Query: 485 LGVSADALKRSNLCSLIDGFGEYDPRAF 512
K+ LID G +A+
Sbjct: 534 QNCEEGVFKK-EASELIDSIGSDVKKAY 560
Score = 100 bits (250), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 152/335 (45%), Gaps = 11/335 (3%)
Query: 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVD 144
P+ + +N+ M V SKD E + ++ + E G+K D +TT+I+ ++G +
Sbjct: 171 PSREVILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAV 230
Query: 145 AMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
FE + +PD V A+I A G++G VD A + E +D +T L++
Sbjct: 231 EWFEKMSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDA--VTFSTLIR 288
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
+G D +Y+ + +K +Y I+ + A +Y D+ G P
Sbjct: 289 IYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTP 348
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
+ +AL+ G A + A I +E K +G+S+ +I Y++L+ C++ + +A E++
Sbjct: 349 NWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIF 408
Query: 320 EHMKSIKL-KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
+ MK+ + P T ++LIT ++ + L M+ G P + ++ +
Sbjct: 409 QDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREAGFEPTLFVLTSVIQCYGK 468
Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
V+ + Q E G+ P+ C++ + ++
Sbjct: 469 AKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQ 503
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 146/321 (45%), Gaps = 28/321 (8%)
Query: 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251
I MK + ++++ +++ + + IK +T I+C Q G + A ++
Sbjct: 176 ILYNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEK 235
Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
M+ G PD V ++A+ID G AG V+ A + A+ + + +++S+L+ + N
Sbjct: 236 MSSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGN 295
Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371
+ L +YE MK++ +KP + N LI ++ + + + D+ + G PN TY+
Sbjct: 296 YDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAA 355
Query: 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFN 429
L+ A R + L + + KE G+ ++++ ++ MC+ R ++A + + + +
Sbjct: 356 LVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYVDEAFEIFQDMKNCE 415
Query: 430 SGRPQIENKWT-----------------SLALMVYREAIVAGTIPTVEVVSKVLGCLQLP 472
+ P + WT AL+ RE AG PT+ V++ V+ C
Sbjct: 416 TCDP---DSWTFSSLITVYACSGRVSEAEAALLQMRE---AGFEPTLFVLTSVIQCYGKA 469
Query: 473 YNADIRERLVEN---LGVSAD 490
D R + LG++ D
Sbjct: 470 KQVDDVVRTFDQVLELGITPD 490
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 82/371 (22%), Positives = 144/371 (38%), Gaps = 69/371 (18%)
Query: 31 SYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
+++ LIR G C+++ E+M+ G+ +Y+ ++ ++++ + + L
Sbjct: 282 TFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDL 341
Query: 87 VPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
+ N P ST+ L+ ++ + A + R ++E GL LY TL++ CA + V
Sbjct: 342 ITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVILYNTLLSMCADNRYV 401
Query: 144 DAMF---------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI 194
D F E PD F++LIT SG V A L +M +P +
Sbjct: 402 DEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQMREA--GFEPTLFVL 459
Query: 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE----FACS--- 247
++++ A QVD + + + I +N +QT E C
Sbjct: 460 TSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPSEEIGKLIGCVEKA 519
Query: 248 -----------VYDDMTKKGVIPDE--------------VFLSALIDFAGHAGKVEAAFE 282
V + ++GV E +L+ LID + K+E A E
Sbjct: 520 KPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLIDLCVNLNKLERACE 579
Query: 283 ILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT--- 339
ILQ I G+ S S A W H+KS+ L ++ ++ +
Sbjct: 580 ILQLGLEYDIYTGLQSKS--------ATQWSL------HLKSLSLGAALTALHVWMNDLS 625
Query: 340 --ALCDGDQLP 348
AL G++ P
Sbjct: 626 EAALESGEEFP 636
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 98/421 (23%), Positives = 192/421 (45%), Gaps = 26/421 (6%)
Query: 7 NMLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL---DMDKVY 63
++L + Y + DV Q+ L+ G + E + E M GL+ D VY
Sbjct: 162 DLLVYTYKDWGSDPRVFDVFFQV-----LVDFGLLREARRVFEKMLNYGLVLSVDSCNVY 216
Query: 64 HARFFNVCKSQKAIKEAFRFFKLVP-NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEA 121
R C FR F V ++++N+++ VC + E A +L L++
Sbjct: 217 LTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKE-AHHLLLLMELK 275
Query: 122 GLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRA 173
G D Y+T++ + G++D +++ +KP+ ++ ++I + + A
Sbjct: 276 GYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEA 335
Query: 174 FDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTI 231
+ +EM + + PD + L+ G + A + + +H +I TP+V YT
Sbjct: 336 EEAFSEMIRQ--GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDI--TPDVLTYTA 391
Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
I+ Q GD A ++ +M KG+ PD V + LI+ AG ++ AF + G
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAG 451
Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
S +++Y++L+ + A EL M I L+P + T N+++ LC + + +
Sbjct: 452 CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAV 511
Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
+++ + ++ GL +T+TY+ L+ A + +++ +L + G+ P +V F ++ G
Sbjct: 512 KLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGF 571
Query: 411 C 411
C
Sbjct: 572 C 572
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 112/446 (25%), Positives = 202/446 (45%), Gaps = 41/446 (9%)
Query: 25 VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY------HARFFNVCKSQ 74
V + SYN +I + GRI E LL ME KG Y + RF + K
Sbjct: 242 VCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVW 301
Query: 75 KAIKEAFRFFKLVPNPTL--STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
K I E + L PN + S +L +C ++ E +++R G+ D +YTT
Sbjct: 302 KLI-EVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR----QGILPDTVVYTT 356
Query: 133 LITTCAKSGKVDA----MFE----NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
LI K G + A +E ++ PD + + A+I+ Q G + A + EM +
Sbjct: 357 LIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCK- 415
Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDW 242
++PD +T L+ AG + A V+ H +P V YT I+ + GD
Sbjct: 416 -GLEPDSVTFTELINGYCKAGHMKDAFRVHN--HMIQAGCSPNVVTYTTLIDGLCKEGDL 472
Query: 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302
+ A + +M K G+ P+ +++++ +G +E A +++ E + G++ ++Y++L
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 532
Query: 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362
M A + KA E+ + M L+PT+ T N L+ C L ++L+ M + G+
Sbjct: 533 MDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGI 592
Query: 363 CPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTL 421
PN T++ L+ +++++ + GV P+ ++ ++ G C KAR +
Sbjct: 593 APNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHC-----KARNM 647
Query: 422 NEHVLSFNSGRPQIENKWTSLALMVY 447
E F +++ K S+++ Y
Sbjct: 648 KEAWFLFQ----EMKGKGFSVSVSTY 669
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/406 (22%), Positives = 167/406 (41%), Gaps = 14/406 (3%)
Query: 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
Y DV N R G + + L+E M+RKGL +Y + +C+ K +
Sbjct: 277 YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 336
Query: 81 FRFFKLVPN---PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT-T 136
F +++ P + L+ D A + + + D YT +I+
Sbjct: 337 EAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGF 396
Query: 137 CAKSGKVDA------MF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
C V+A MF + ++PD V F LI ++G + AF V M P
Sbjct: 397 CQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA--GCSP 454
Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
+ +T L+ G +D A E+ + K ++ Y +N ++G+ E A +
Sbjct: 455 NVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLV 514
Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
+ G+ D V + L+D +G+++ A EIL+E +G+ I++++ LM
Sbjct: 515 GEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLH 574
Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
+ +L M + + P +T N+L+ C + L + DM S G+ P+ TY
Sbjct: 575 GMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTY 634
Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRR 414
L+ + +++ L + K G ++ + +I G R+
Sbjct: 635 ENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRK 680
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 131/284 (46%), Gaps = 10/284 (3%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
P TF L++ + + AF+V + +AG + YTTLI K G +D+ E
Sbjct: 419 PDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANEL 478
Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
++P+ +N+++ +SG ++ A ++ E E ++ D +T LM A
Sbjct: 479 LHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEF--EAAGLNADTVTYTTLMDAY 536
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
+G++D+A+E+ K + ++ T + + +N G E + + M KG+ P+
Sbjct: 537 CKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNA 596
Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
++L+ ++AA I ++ ++G+ +Y +L+ A+N ++A L++
Sbjct: 597 TTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE 656
Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365
MK +VST + LI + + EV M+ GL +
Sbjct: 657 MKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 5/154 (3%)
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELY 319
+VF L+DF G + A + ++ N G+ + + S + + S + A+ ++
Sbjct: 179 DVFFQVLVDF----GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVF 234
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
+ + V++ N +I +C ++ + +L M+ G P+ I+YS ++ R
Sbjct: 235 REFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRF 294
Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413
+++ L+ K G+ PN ++ IIG+ R
Sbjct: 295 GELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCR 328
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 110 bits (274), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 100/393 (25%), Positives = 168/393 (42%), Gaps = 17/393 (4%)
Query: 47 LLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPTLSTFNMLMS-VC 102
L + ME KG+ C+ +K A + KL P TF+ L++ +C
Sbjct: 110 LCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLC 169
Query: 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK-------VDAMFE-NVKPDR 154
+ SE V R+V E G K D TL+ SGK +D M E +P+
Sbjct: 170 LEGRVSEALELVDRMV-EMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNA 228
Query: 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY 214
V + ++ +SG A ++L +M E + D + ++ G +D A ++
Sbjct: 229 VTYGPVLNVMCKSGQTALAMELLRKM--EERNIKLDAVKYSIIIDGLCKHGSLDNAFNLF 286
Query: 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274
+ I Y I I G W+ + DM K+ + P+ V S LID
Sbjct: 287 NEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKE 346
Query: 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334
GK+ A E+ +E ++GI+ I+Y+SL+ + KA ++ + M S P + T
Sbjct: 347 GKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTF 406
Query: 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394
N LI C +++ +E+ M G+ +T+TY+ L+ + V L +
Sbjct: 407 NILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVS 466
Query: 395 DGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
V PN+V +K ++ G+C EKA + E +
Sbjct: 467 RKVPPNIVTYKILLDGLCDNGESEKALEIFEKI 499
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 148/333 (44%), Gaps = 11/333 (3%)
Query: 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
P PT+ F+ L S A +K + + + ++ G+ + + +I + K+
Sbjct: 84 PLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAF 143
Query: 144 DAMFENVK----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
AM + +K P+ + F+ LI G V A +++ M H PD ITI L+
Sbjct: 144 SAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK--PDLITINTLVN 201
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
+G+ A + + +Y + Y +N ++G A + M ++ +
Sbjct: 202 GLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL 261
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
D V S +ID G ++ AF + E + +GI+ II+Y+ L+G NA W +L
Sbjct: 262 DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLL 321
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
M K+ P V T + LI + +L + E+ +M G+ P+TITY+ L+ ++
Sbjct: 322 RDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKE 381
Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC 411
+ ++ ++ G PN+ F +I G C
Sbjct: 382 NHLDKANQMVDLMVSKGCDPNIRTFNILINGYC 414
Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/420 (21%), Positives = 180/420 (42%), Gaps = 60/420 (14%)
Query: 33 NRLIRQGRISECIDLLEDMERKG----LLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88
N L +GR+SE ++L++ M G L+ ++ + + +C S K + K+V
Sbjct: 166 NGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNG----LCLSGKEAEAMLLIDKMVE 221
Query: 89 ---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145
P T+ +++V S + A ++LR ++E +K D Y+ +I K G +D
Sbjct: 222 YGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDN 281
Query: 146 MF-------------------------------------------ENVKPDRVVFNALIT 162
F + P+ V F+ LI
Sbjct: 282 AFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLID 341
Query: 163 ACGQSGAVDRAFDVLAEMNAEVH-PVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221
+ + G + A ++ EM +H + PD IT +L+ +D+A ++ ++
Sbjct: 342 SFVKEGKLREAEELHKEM---IHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398
Query: 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281
+ I IN + + ++ M+ +GV+ D V + LI GK+ A
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAK 458
Query: 282 EILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340
E+ QE ++ + I++Y L+ G C N ++ +KALE++E ++ K++ + N +I
Sbjct: 459 ELFQEMVSRKVPPNIVTYKILLDGLCDNGES-EKALEIFEKIEKSKMELDIGIYNIIIHG 517
Query: 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400
+C+ ++ ++ + G+ P TY+I++ +K + +L + +EDG P+
Sbjct: 518 MCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/393 (21%), Positives = 170/393 (43%), Gaps = 17/393 (4%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
N + + G+ + ++LL ME + + +D V ++ + ++ AF F +
Sbjct: 236 NVMCKSGQTALAMELLRKMEERNI-KLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGI 294
Query: 89 NPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
+ T+N+L+ C + + +GA ++LR + + + + ++ LI + K GK+
Sbjct: 295 TTNIITYNILIGGFCNAGRWDDGA-KLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAE 353
Query: 144 ----DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
+ + + PD + + +LI + +D+A ++ M ++ DP+ T L+
Sbjct: 354 ELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSK--GCDPNIRTFNILIN 411
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
A ++D E+++ + + Y I + G A ++ +M + V P
Sbjct: 412 GYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPP 471
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
+ V L+D G+ E A EI ++ + + + I Y+ ++ NA A +L+
Sbjct: 472 NIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 531
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
+ +KP V T N +I LC L + + M+ G P+ TY+IL+ A
Sbjct: 532 CSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGD 591
Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412
D + L+ + K G + K +I M S
Sbjct: 592 GDATKSVKLIEELKRCGFSVDASTIKMVIDMLS 624
Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 76/351 (21%), Positives = 150/351 (42%), Gaps = 27/351 (7%)
Query: 25 VSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEA 80
++ + +YN LI GR + LL DM ++ + + + V + + + ++EA
Sbjct: 294 ITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKI-NPNVVTFSVLIDSFVKEGKLREA 352
Query: 81 FRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
K + + P T+ L+ + A Q++ L+ G + + + LI
Sbjct: 353 EELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILING 412
Query: 137 CAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188
K+ ++D E V D V +N LI + G ++ A ++ EM + P
Sbjct: 413 YCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP-- 470
Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGD--WEF 244
P+ +T L+ + G+ ++A E+++ I K ++ +Y I I+ C + D W+
Sbjct: 471 PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDL 530
Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
CS + KGV P + +I G + A + ++ + G + +Y+ L+
Sbjct: 531 FCS----LPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIR 586
Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
A + K+++L E +K ST+ +I L DG +++LS
Sbjct: 587 AHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDGRLKKSFLDMLS 637
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 77/181 (42%), Gaps = 10/181 (5%)
Query: 233 INCCSQTGDWEFACSV-YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
INC + F C + + + + E S L+D K + A ++ ++ +
Sbjct: 32 INC---PNELSFCCERGFSAFSDRNLSYRERLRSGLVDI-----KADDAIDLFRDMIHSR 83
Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
+I +S L A + K + L L + M+ + + T++ +I C +L
Sbjct: 84 PLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAF 143
Query: 352 EVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GM 410
+ + LG PNTIT+S L+ + V L L+ + E G P+L+ ++ G+
Sbjct: 144 SAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGL 203
Query: 411 C 411
C
Sbjct: 204 C 204
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 109 bits (273), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 107/418 (25%), Positives = 179/418 (42%), Gaps = 25/418 (5%)
Query: 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYH-ARFFNVCKSQKAIKEAF- 81
+L ++RL R + +DL + ME KG+ +Y + N C + + AF
Sbjct: 71 RLIDFSRLFSVVARTKQYDLVLDLCKQMELKGI--AHNLYTLSIMINCCCRCRKLSLAFS 128
Query: 82 ---RFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137
+ KL P TF+ L++ +C + SE V R+V E G K L+
Sbjct: 129 AMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMV-EMGHKPTLITLNALVNGL 187
Query: 138 AKSGKV-------DAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189
+GKV D M E +P+ V + ++ +SG A ++L +M E +
Sbjct: 188 CLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKM--EERKIKL 245
Query: 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249
D + ++ G +D A ++ + K +YT I G W+ +
Sbjct: 246 DAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLL 305
Query: 250 DDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309
DM K+ + PD V SALID GK+ A E+ +E +GIS ++Y+SL+
Sbjct: 306 RDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKE 365
Query: 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369
KA + + M S P + T N LI C + + +E+ M G+ +T+TY
Sbjct: 366 NQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTY 425
Query: 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
+ L+ +EV L + V P++V +K ++ G+C EKA + E +
Sbjct: 426 NTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKI 483
Score = 109 bits (273), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/390 (23%), Positives = 176/390 (45%), Gaps = 19/390 (4%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS-QKAIKEAFRFFKLVPNPT 91
N L G++S+ + L++ M G + Y +CKS Q A+ A + +
Sbjct: 185 NGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTAL--AMELLRKMEERK 242
Query: 92 LS----TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--- 144
+ +++++ + AF + ++ G KAD +YTTLI +G+ D
Sbjct: 243 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGA 302
Query: 145 -----AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
+ + PD V F+ALI + G + A ++ EM + PD +T +L+
Sbjct: 303 KLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQ--RGISPDTVTYTSLID 360
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
Q+D+A + ++ + I IN + + ++ M+ +GV+
Sbjct: 361 GFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVA 420
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALEL 318
D V + LI GK+E A E+ QE ++ + I+SY L+ G C N + +KALE+
Sbjct: 421 DTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEP-EKALEI 479
Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
+E ++ K++ + N +I +C+ ++ ++ + G+ P+ TY+I++ +
Sbjct: 480 FEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCK 539
Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
K + +L + +EDG PN + +I
Sbjct: 540 KGSLSEADLLFRKMEEDGHSPNGCTYNILI 569
Score = 70.5 bits (171), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 136/340 (40%), Gaps = 37/340 (10%)
Query: 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230
D A D+ EM P P I L A Q D ++ K + I +
Sbjct: 54 DDAVDLFQEMTRS-RP-RPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS 111
Query: 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290
I INCC + A S + K G PD V S LI+ G+V A E++
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171
Query: 291 GISVGIISYSSLM-GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
G +I+ ++L+ G C N K A+ L + M +P T ++ +C Q
Sbjct: 172 GHKPTLITLNALVNGLCLNGK-VSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTAL 230
Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
ME+L M+ + + + YSI++ + ++ L ++ + G +++++ +I
Sbjct: 231 AMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIR 290
Query: 409 GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGC 468
G C +GR W A ++ R+ I P V S ++ C
Sbjct: 291 GFCY-----------------AGR------WDDGAKLL-RDMIKRKITPDVVAFSALIDC 326
Query: 469 L----QLPYNADIRERLVENLGVSADALKRSNLCSLIDGF 504
+L ++ + +++ G+S D + + SLIDGF
Sbjct: 327 FVKEGKLREAEELHKEMIQR-GISPDTVTYT---SLIDGF 362
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/344 (22%), Positives = 143/344 (41%), Gaps = 27/344 (7%)
Query: 32 YNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87
Y LIR GR + LL DM ++ + D V + + + ++EA K +
Sbjct: 285 YTTLIRGFCYAGRWDDGAKLLRDMIKRKITP-DVVAFSALIDCFVKEGKLREAEELHKEM 343
Query: 88 P----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143
+P T+ L+ + A +L L+ G + + + LI K+ +
Sbjct: 344 IQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLI 403
Query: 144 DAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195
D E V D V +N LI + G ++ A ++ EM + V PD ++
Sbjct: 404 DDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVS--RRVRPDIVSYK 461
Query: 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGD--WEFACSVYDD 251
L+ + G+ ++A E+++ I K ++ +Y I I+ C + D W+ CS
Sbjct: 462 ILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCS---- 517
Query: 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311
+ KGV PD + +I G + A + ++ + G S +Y+ L+ A +
Sbjct: 518 LPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGD 577
Query: 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355
K+ +L E +K ST+ ++ L DG +++LS
Sbjct: 578 ATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGRLKKSFLDMLS 621
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335
K + A ++ QE +I +S L + K + L+L + M+ + + T++
Sbjct: 52 KEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLS 111
Query: 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395
+I C +L + + LG P+T+T+S L+ + V L L+ + E
Sbjct: 112 IMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEM 171
Query: 396 GVIPNLVMFKCII-GMC 411
G P L+ ++ G+C
Sbjct: 172 GHKPTLITLNALVNGLC 188
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 109 bits (273), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 95/391 (24%), Positives = 169/391 (43%), Gaps = 18/391 (4%)
Query: 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAF---RFFKLVPNPTLS 93
+ R I L E M+ G+ + + VC S + + + + KL P L
Sbjct: 95 KMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLV 154
Query: 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
TF L++ E A + + G K + YTTLI K+ ++ E
Sbjct: 155 TFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQM 214
Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
+P+ V +NAL+T + G A +L +M ++P+ IT AL+ A G
Sbjct: 215 GTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKR--RIEPNVITFTALIDAFVKVG 272
Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIA--INCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
++ A+E+Y ++ + ++ P+V+T IN G + A ++ M + G P+EV
Sbjct: 273 KLMEAKELYNVMIQMSV--YPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVI 330
Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
+ LI + +VE +I E +G+ I+Y+ L+ A E++ M
Sbjct: 331 YTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMS 390
Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
S + P + T N L+ LC ++ K + + M+ + N +TY+I++ + VE
Sbjct: 391 SRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVE 450
Query: 384 VGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
L G+ PN++ + +I G C R
Sbjct: 451 DAFDLFCSLFSKGMKPNVITYTTMISGFCRR 481
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/328 (22%), Positives = 155/328 (47%), Gaps = 18/328 (5%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------ 143
P + T+ L+ ++ A ++ + G + + Y L+T + G+
Sbjct: 186 PNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWL 245
Query: 144 --DAMFENVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGALM 198
D M ++P+ + F ALI A + G + A ++V+ +M+ V PD T G+L+
Sbjct: 246 LRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMS-----VYPDVFTYGSLI 300
Query: 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
G +D AR+++ ++ + +YT I+ ++ E ++ +M++KGV+
Sbjct: 301 NGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVV 360
Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALE 317
+ + + LI G+ + A E+ + ++ I +Y+ L+ G C N K +KAL
Sbjct: 361 ANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGK-VEKALM 419
Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
++E+M+ ++ + T +I +C ++ ++ + S G+ PN ITY+ ++
Sbjct: 420 IFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFC 479
Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
R+ + L + KEDG +PN ++K
Sbjct: 480 RRGLIHEADSLFKKMKEDGFLPNESVYK 507
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 112/515 (21%), Positives = 217/515 (42%), Gaps = 54/515 (10%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---- 88
N L + G++ + L ++ KG+ D V + + S+ ++EAF +P
Sbjct: 243 NALCKDGKMEKVGTFLSQVQEKGVYP-DIVTYNTLISAYSSKGLMEEAFELMNAMPGKGF 301
Query: 89 NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV----- 143
+P + T+N +++ E A +V + +GL D Y +L+ K G V
Sbjct: 302 SPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEK 361
Query: 144 ---DAMFENVKPDRVVFNALITACGQSGAVDRA---FDVLAEMNAEVHPVDPDHITIGAL 197
D +V PD V F+++++ +SG +D+A F+ + E + PD++ L
Sbjct: 362 VFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAG-----LIPDNVIYTIL 416
Query: 198 MKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256
++ G + A + +M+ + TI C + E A ++++MT++
Sbjct: 417 IQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGE-ADKLFNEMTERA 475
Query: 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316
+ PD L+ LID G ++ A E+ Q+ K + I + +++Y++L+ + A
Sbjct: 476 LFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAK 535
Query: 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376
E++ M S ++ PT + + L+ ALC L + V +M S + P + + ++
Sbjct: 536 EIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGY 595
Query: 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIE 436
R + G L + +G +P+ + + +I G + E
Sbjct: 596 CRSGNASDGESFLEKMISEGFVPDCISYNTLI---------------------YGFVREE 634
Query: 437 NKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL----QLPYNADIRERLVENLGVSADAL 492
N + L+ E G +P V + +L Q+ + +++E GV+ D
Sbjct: 635 NMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIER-GVNPD-- 691
Query: 493 KRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
RS +I+GF D AF + +E G P
Sbjct: 692 -RSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSP 725
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 158/342 (46%), Gaps = 16/342 (4%)
Query: 74 QKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL 133
Q+ + + F + +LS M+ + S + S+ +LR+++ +G
Sbjct: 96 QRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSG----------- 144
Query: 134 ITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
++ +D+ F N + VF+ LI Q+ + A + + ++ V D
Sbjct: 145 VSRLEIVNSLDSTFSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSID--A 202
Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253
AL+ + G V+ A VY+ I + + I +N + G E + +
Sbjct: 203 CNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQ 262
Query: 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNW 312
+KGV PD V + LI G +E AFE++ +G S G+ +Y++++ G C + K +
Sbjct: 263 EKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGK-Y 321
Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
++A E++ M L P +T +L+ C + +T +V SDM+S + P+ + +S +
Sbjct: 322 ERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSM 381
Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
+ R +++ LM + KE G+IP+ V++ +I G C +
Sbjct: 382 MSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRK 423
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 97/450 (21%), Positives = 183/450 (40%), Gaps = 45/450 (10%)
Query: 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----- 148
T N++++ E L VQE G+ D Y TLI+ + G ++ FE
Sbjct: 237 TLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAM 296
Query: 149 ---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG 205
P +N +I + G +RA +V AEM + PD T +L+ G
Sbjct: 297 PGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS--GLSPDSTTYRSLLMEACKKG 354
Query: 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265
V +V+ + ++ ++ ++ +++G+ + A ++ + + G+IPD V +
Sbjct: 355 DVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYT 414
Query: 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325
LI G + A + E QG ++ +++Y++++ K +A +L+ M
Sbjct: 415 ILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTER 474
Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
L P T+ LI C L ME+ MK + + +TY+ LL + D++
Sbjct: 475 ALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTA 534
Query: 386 LMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLAL 444
+ + ++P + + ++ +CS+ + + A
Sbjct: 535 KEIWADMVSKEILPTPISYSILVNALCSKGH------------------------LAEAF 570
Query: 445 MVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENL---GVSADALKRSNLCSLI 501
V+ E I PTV + + ++ NA E +E + G D + + +LI
Sbjct: 571 RVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYN---TLI 627
Query: 502 DGF--GEYDPRAFSLLE--EAASFGIVPCV 527
GF E +AF L++ E G+VP V
Sbjct: 628 YGFVREENMSKAFGLVKKMEEEQGGLVPDV 657
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 115/268 (42%), Gaps = 26/268 (9%)
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
D VF LI A K+ A E +++G +V I + ++L+G+ + A +Y
Sbjct: 165 DSVF-DLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVY 223
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
+ + + V T+N ++ ALC ++ K LS ++ G+ P+ +TY+ L+ A K
Sbjct: 224 QEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSK 283
Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHVLSFNSGRPQIEN 437
+E L++ G P + + +I G+C +YE+A+ + +L SG
Sbjct: 284 GLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEML--RSGLSPDST 341
Query: 438 KWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNL 497
+ SL + EA G + E V +D+R R V D + S++
Sbjct: 342 TYRSLLM----EACKKGDVVETEKVF-----------SDMRSR-----DVVPDLVCFSSM 381
Query: 498 CSLIDGFGEYDPRAFSLLEEAASFGIVP 525
SL G D +A G++P
Sbjct: 382 MSLFTRSGNLD-KALMYFNSVKEAGLIP 408
Score = 49.7 bits (117), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 76/182 (41%), Gaps = 8/182 (4%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD----- 144
PT ++++L++ S AF+V + +K + ++I +SG
Sbjct: 548 PTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESF 607
Query: 145 ---AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
+ E PD + +N LI + + +AF ++ +M E + PD T +++
Sbjct: 608 LEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGF 667
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
Q+ A V + + + + YT IN + A ++D+M ++G PD+
Sbjct: 668 CRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDD 727
Query: 262 VF 263
F
Sbjct: 728 KF 729
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/387 (23%), Positives = 164/387 (42%), Gaps = 12/387 (3%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQK---AIKEAFRFFKLVPNPT 91
L + + SE + L+E M KG Y A +CK + A+ + K
Sbjct: 190 LFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEAD 249
Query: 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK--------V 143
+ +N ++ K + AF + ++ G+K D Y LI+ G+
Sbjct: 250 VVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLS 309
Query: 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
D + +N+ PD V FNALI A + G + A + EM H PD + L+K
Sbjct: 310 DMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCF-PDVVAYNTLIKGFCK 368
Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
+V+ EV++ + + + G YT I+ Q D + A V+ M GV PD +
Sbjct: 369 YKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMT 428
Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
+ L+D + G VE A + + + + + + I++Y++++ A A + +L+ +
Sbjct: 429 YNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLS 488
Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
+KP V T +++ C + + +MK G PN+ TY+ L+ A R D
Sbjct: 489 LKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEA 548
Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGM 410
L+ + + G + F + M
Sbjct: 549 ASAELIKEMRSCGFAGDASTFGLVTNM 575
Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 98/426 (23%), Positives = 175/426 (41%), Gaps = 52/426 (12%)
Query: 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-SQKAIKEAF--RFFKLVPNPTLS 93
+ + I L E M+ G+ Y C+ SQ ++ A + KL P++
Sbjct: 87 KMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIV 146
Query: 94 TFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AMFEN 149
T N L++ C ++ SE V ++V E G + D +TTL+ + K A+ E
Sbjct: 147 TLNSLLNGFCHGNRISEAVALVDQMV-EMGYQPDTVTFTTLVHGLFQHNKASEAVALVER 205
Query: 150 V-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204
+ +PD V + A+I + G D A ++L +M E ++ D + ++
Sbjct: 206 MVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKM--EKGKIEADVVIYNTIIDGLCKY 263
Query: 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264
+D A +++ + IK Y I+C G W A + DM +K + PD VF
Sbjct: 264 KHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFF 323
Query: 265 SALIDFAGHAGK------------------------------------VEAAFEILQEAK 288
+ALID GK VE E+ +E
Sbjct: 324 NALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMS 383
Query: 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348
+G+ ++Y++L+ A++ A +++ M S + P + T N L+ LC+ +
Sbjct: 384 QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVE 443
Query: 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
+ V M+ + + +TY+ ++ A + VE G L GV PN+V + ++
Sbjct: 444 TALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 503
Query: 409 -GMCSR 413
G C +
Sbjct: 504 SGFCRK 509
Score = 70.1 bits (170), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 88/370 (23%), Positives = 147/370 (39%), Gaps = 49/370 (13%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKV-YHARFFNVCKSQKAIKEAFRFFKLVPN-- 89
N L ++G ++LL ME KG ++ D V Y+ +CK K + +AF F +
Sbjct: 223 NGLCKRGEPDLALNLLNKME-KGKIEADVVIYNTIIDGLCK-YKHMDDAFDLFNKMETKG 280
Query: 90 --PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV---- 143
P + T+N L+S + A ++L + E + D + LI K GK+
Sbjct: 281 IKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAE 340
Query: 144 ---DAMFENVK--PDRVVFNALITACGQSGAVDRAFDVLAEM------------------ 180
D M ++ PD V +N LI + V+ +V EM
Sbjct: 341 KLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHG 400
Query: 181 --------NAEV-------HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225
NA++ V PD +T L+ N G V+ A V++ + K ++K
Sbjct: 401 FFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLD 460
Query: 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ 285
YT I + G E ++ ++ KGV P+ V + ++ G E A +
Sbjct: 461 IVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFV 520
Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
E K G +Y++L+ A + + EL + M+S ST + L DG
Sbjct: 521 EMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTNMLHDGR 580
Query: 346 QLPKTMEVLS 355
+++LS
Sbjct: 581 LDKSFLDMLS 590
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 79/170 (46%), Gaps = 1/170 (0%)
Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
A ++ DM K P V S L+ K + + ++ +N GIS + +YS +
Sbjct: 59 AIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFIN 118
Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
AL + M + P++ T+N+L+ C G+++ + + ++ M +G P
Sbjct: 119 YFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQP 178
Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
+T+T++ L+ + + + L+ + G P+LV + +I G+C R
Sbjct: 179 DTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKR 228
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 96/413 (23%), Positives = 185/413 (44%), Gaps = 21/413 (5%)
Query: 12 PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
P+P+ N +L Y+ +I G+ E + + R L + V + F C
Sbjct: 81 PFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGI-----RNDLYTFNIVINC--FCCC 133
Query: 72 -KSQKAIKEAFRFFKLVPNPTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKL 129
+ A+ + KL P T L++ C ++ S+ V ++V E G K D
Sbjct: 134 FQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV-EIGYKPDIVA 192
Query: 130 YTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMN 181
Y +I + K+ +V+ F+ ++P+ V + AL+ S A +L++M
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252
Query: 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241
+ + P+ IT AL+ A G+V A+E+++ + + +I Y+ IN
Sbjct: 253 KK--KITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310
Query: 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301
+ A ++D M KG + D V + LI+ A +VE ++ +E +G+ ++Y++
Sbjct: 311 IDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNT 370
Query: 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361
L+ A + KA E + M + P + T N L+ LCD +L K + + DM+
Sbjct: 371 LIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKRE 430
Query: 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR 413
+ + +TY+ ++ + VE L G+ P++V + ++ G+C++
Sbjct: 431 MDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTK 483
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 151/348 (43%), Gaps = 12/348 (3%)
Query: 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
P P++ FN L+S K + + + ++ G++ D + +I +V
Sbjct: 81 PFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLAL 140
Query: 148 E--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
+PDRV +L+ + V A ++ +M E+ PD + A++
Sbjct: 141 SILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKM-VEIG-YKPDIVAYNAIID 198
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
+ +V+ A + +K I + I+ YT +N + W A + DM KK + P
Sbjct: 199 SLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITP 258
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
+ + SAL+D GKV A E+ +E I I++YSSL+ +A +++
Sbjct: 259 NVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMF 318
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
+ M S V + N LI C ++ M++ +M GL NT+TY+ L+ +
Sbjct: 319 DLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQA 378
Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSR-RYEKARTLNEHV 425
DV+ SQ G+ P++ + ++ G+C EKA + E +
Sbjct: 379 GDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDM 426
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/373 (21%), Positives = 171/373 (45%), Gaps = 36/373 (9%)
Query: 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--- 89
N R+ R+S+ + L++ M G Y+A ++CK+++ + +AF FFK +
Sbjct: 163 NGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKR-VNDAFDFFKEIERKGI 221
Query: 90 -PTLSTFNMLMS-VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147
P + T+ L++ +C SS+ S+ A RL+ D +
Sbjct: 222 RPNVVTYTALVNGLCNSSRWSDAA----RLLS------------------------DMIK 253
Query: 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV 207
+ + P+ + ++AL+ A ++G V A ++ EM +DPD +T +L+ ++
Sbjct: 254 KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVR--MSIDPDIVTYSSLINGLCLHDRI 311
Query: 208 DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267
D A +++ ++ Y IN + E ++ +M+++G++ + V + L
Sbjct: 312 DEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTL 371
Query: 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327
I AG V+ A E + GIS I +Y+ L+G + +KAL ++E M+ ++
Sbjct: 372 IQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREM 431
Query: 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387
+ T +I +C ++ + + + GL P+ +TY+ ++ K +
Sbjct: 432 DLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEA 491
Query: 388 LLSQAKEDGVIPN 400
L ++ K++G++ N
Sbjct: 492 LYTKMKQEGLMKN 504
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 107/429 (24%), Positives = 195/429 (45%), Gaps = 26/429 (6%)
Query: 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERK----GLLDMDKVYHARFFNVCKSQKAIKE 79
D+ E+L S RL R ++++ IDL DM + ++D +++ A + K I
Sbjct: 51 DLRERL-SKTRL-RDIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSA-IVKLKKYDVVISL 107
Query: 80 AFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139
+ L L TFN++++ A +L + + G + D +L+ +
Sbjct: 108 GKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCR 167
Query: 140 SGKV-------DAMFE-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191
+V D M E KPD V +NA+I + ++ V+ AFD E+ E + P+
Sbjct: 168 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEI--ERKGIRPNV 225
Query: 192 ITIGALMKACANAGQ-VDRAREVYKMIHKYNIKGTPEV--YTIAINCCSQTGDWEFACSV 248
+T AL+ N+ + D AR + MI K K TP V Y+ ++ + G A +
Sbjct: 226 VTYTALVNGLCNSSRWSDAARLLSDMIKK---KITPNVITYSALLDAFVKNGKVLEAKEL 282
Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308
+++M + + PD V S+LI+ +++ A ++ ++G ++SY++L+
Sbjct: 283 FEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCK 342
Query: 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368
AK + ++L+ M L T N LI + K E S M G+ P+ T
Sbjct: 343 AKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWT 402
Query: 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVL 426
Y+ILL ++E L++ ++ + ++V + +I GMC + + E+A +L L
Sbjct: 403 YNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCS-L 461
Query: 427 SFNSGRPQI 435
S +P I
Sbjct: 462 SLKGLKPDI 470
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 146/323 (45%), Gaps = 12/323 (3%)
Query: 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------ 148
FN+LM+ + A +V + + L+ + TLI K G +D F
Sbjct: 243 FNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQME 302
Query: 149 --NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206
+PD ++ALI A + +D A + EM + P+ + L+ + G+
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKR--GLIPNDVIFTTLIHGHSRNGE 360
Query: 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA 266
+D +E Y+ + ++ +Y +N + GD A ++ D M ++G+ PD++ +
Sbjct: 361 IDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTT 420
Query: 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSNAKNWQKALELYEHMKSI 325
LID G VE A EI +E GI + + +S+L+ G C + L E +++
Sbjct: 421 LIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRA- 479
Query: 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVG 385
+KP T ++ A C ++L +M+S G P+ +TY++LL + ++
Sbjct: 480 GIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNA 539
Query: 386 LMLLSQAKEDGVIPNLVMFKCII 408
MLL GV+P+ + + ++
Sbjct: 540 DMLLDAMLNIGVVPDDITYNTLL 562
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 159/360 (44%), Gaps = 16/360 (4%)
Query: 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128
N+ +QK E K PT+ +FN L++ + + F++ ++++ + D
Sbjct: 255 NISDAQKVFDE---ITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVF 311
Query: 129 LYTTLITTCAKSGKVDA---MFEN-----VKPDRVVFNALITACGQSGAVDRAFDVLAEM 180
Y+ LI K K+D +F+ + P+ V+F LI ++G +D + +M
Sbjct: 312 TYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKM 371
Query: 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240
++ + PD + L+ G + AR + + + ++ YT I+ + G
Sbjct: 372 LSK--GLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGG 429
Query: 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300
D E A + +M + G+ D V SAL+ G+V A L+E GI ++Y+
Sbjct: 430 DVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYT 489
Query: 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360
+M A + Q +L + M+S P+V T N L+ LC Q+ +L M ++
Sbjct: 490 MMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNI 549
Query: 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKART 420
G+ P+ ITY+ LL R + + Q E G++ +L +K I+ R + R
Sbjct: 550 GVVPDDITYNTLLEGHHRHANSSKRYI---QKPEIGIVADLASYKSIVNELDRASKDHRN 606
Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 143/303 (47%), Gaps = 11/303 (3%)
Query: 118 VQEAGLKADCKLYTTLITTCAKSGKV-DA--MFENV-----KPDRVVFNALITACGQSGA 169
+ +AG + ++ L+ K G + DA +F+ + +P V FN LI + G
Sbjct: 231 ILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGN 290
Query: 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229
+D F + +M E PD T AL+ A ++D A ++ + K + ++
Sbjct: 291 LDEGFRLKHQM--EKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIF 348
Query: 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289
T I+ S+ G+ + Y M KG+ PD V + L++ G + AA I+
Sbjct: 349 TTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIR 408
Query: 290 QGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349
+G+ I+Y++L+ + + ALE+ + M ++ +AL+ +C ++
Sbjct: 409 RGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVID 468
Query: 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII- 408
L +M G+ P+ +TY++++ A +K D + G LL + + DG +P++V + ++
Sbjct: 469 AERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLN 528
Query: 409 GMC 411
G+C
Sbjct: 529 GLC 531
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%)
Query: 286 EAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345
E + G + + ++ LM N A ++++ + L+PTV + N LI C
Sbjct: 230 EILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVG 289
Query: 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405
L + + M+ P+ TYS L+ A +++ ++ L + + G+IPN V+F
Sbjct: 290 NLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFT 349
Query: 406 CIIGMCSRRYE 416
+I SR E
Sbjct: 350 TLIHGHSRNGE 360
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110,
chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2
SV=2
Length = 1440
Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 143/311 (45%), Gaps = 22/311 (7%)
Query: 90 PTLSTFNMLMSVCASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-- 145
P L +FN L++ S A ++L +V+ +GL+ D Y TL++ C++ +D
Sbjct: 258 PDLISFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAV 317
Query: 146 -MFENV-----KPDRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA 196
+FE++ +PD +NA+I+ CG + +R F M E+ PD +T +
Sbjct: 318 KVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLF-----MELELKGFFPDAVTYNS 372
Query: 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-K 255
L+ A A ++ +EVY+ + K Y I+ + G + A +Y DM
Sbjct: 373 LLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLS 432
Query: 256 GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315
G PD + + LID G A + A ++ E + GI + +YS+L+ + A ++A
Sbjct: 433 GRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAGKREEA 492
Query: 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375
+ + M KP + ++ L G++ K + DM S G P+ Y ++++
Sbjct: 493 EDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILG 552
Query: 376 C---ERKDDVE 383
R DD++
Sbjct: 553 LMKENRSDDIQ 563
Score = 95.9 bits (237), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 145/331 (43%), Gaps = 19/331 (5%)
Query: 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA------ 145
+ +N +M V + S A +++ +++ G D + TLI KSG +
Sbjct: 225 VQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVEL 284
Query: 146 --MFEN--VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
M N ++PD + +N L++AC + +D A V +M E H PD T A++
Sbjct: 285 LDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDM--EAHRCQPDLWTYNAMISVY 342
Query: 202 ANAGQVDRAREVYKMIHKYNIKGT-PE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258
G A E ++ + +KG P+ Y + ++ + E VY M K G
Sbjct: 343 GRCGL---AAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFG 399
Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKN-QGISVGIISYSSLMGACSNAKNWQKALE 317
DE+ + +I G G+++ A ++ ++ K G + I+Y+ L+ + A +A
Sbjct: 400 KDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAA 459
Query: 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377
L M + +KPT+ T +ALI + + + S M G P+ + YS++L
Sbjct: 460 LMSEMLDVGIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLL 519
Query: 378 RKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
R ++ L DG P+ +++ +I
Sbjct: 520 RGNETRKAWGLYRDMISDGHTPSYTLYELMI 550
Score = 89.4 bits (220), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 87/360 (24%), Positives = 161/360 (44%), Gaps = 30/360 (8%)
Query: 146 MFENVKP---DRV-VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
+F +P DRV V+NA++ +SG +A +++ M PD I+ L+ A
Sbjct: 213 IFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQ--RGCVPDLISFNTLINAR 270
Query: 202 ANAGQV--DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
+G + + A E+ M+ ++ Y ++ CS+ + + A V++DM P
Sbjct: 271 LKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQP 330
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
D +A+I G G A + E + +G ++Y+SL+ A + +N +K E+Y
Sbjct: 331 DLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVY 390
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSILLVACER 378
+ M+ + T N +I QL +++ DMK L G P+ ITY++L+ + +
Sbjct: 391 QQMQKMGFGKDEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGK 450
Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFN----SG-RP 433
+ L+S+ + G+ P L + +I C Y KA E +F+ SG +P
Sbjct: 451 ANRTVEAAALMSEMLDVGIKPTLQTYSALI--CG--YAKAGKREEAEDTFSCMLRSGTKP 506
Query: 434 Q-----------IENKWTSLALMVYREAIVAGTIPTVEVVS-KVLGCLQLPYNADIRERL 481
+ T A +YR+ I G P+ + +LG ++ + DI++ +
Sbjct: 507 DNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYTLYELMILGLMKENRSDDIQKTI 566
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/274 (22%), Positives = 128/274 (46%), Gaps = 7/274 (2%)
Query: 143 VDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACA 202
+DA + P F ++ + GQ + RA +V +N H P+ + A++
Sbjct: 147 LDARLVQMTPTDYCF--VVKSVGQE-SWQRALEVFEWLNLR-HWHSPNARMVAAILGVLG 202
Query: 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262
Q A E++ + +VY + S++G + A + D M ++G +PD +
Sbjct: 203 RWNQESLAVEIFTRAEP-TVGDRVQVYNAMMGVYSRSGKFSKAQELVDAMRQRGCVPDLI 261
Query: 263 FLSALIDFAGHAGKVEA--AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
+ LI+ +G + A E+L +N G+ I+Y++L+ ACS N A++++E
Sbjct: 262 SFNTLINARLKSGGLTPNLAVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFE 321
Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380
M++ + +P + T NA+I+ + + +++ G P+ +TY+ LL A R+
Sbjct: 322 DMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARER 381
Query: 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR 414
+ E + Q ++ G + + + II M ++
Sbjct: 382 NTEKVKEVYQQMQKMGFGKDEMTYNTIIHMYGKQ 415
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 140/346 (40%), Gaps = 13/346 (3%)
Query: 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKP 152
+ + L+ C +++ A QV ++ +G +A + +++ K G + + V
Sbjct: 682 TMYETLLHCCVANEHYAEASQVFSDLRLSGCEASESVCKSMVVVYCKLGFPETAHQVVNQ 741
Query: 153 DRV---------VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN 203
++ +I A G+ +A V+ N PD T +LM A A
Sbjct: 742 AETKGFHFACSPMYTDIIEAYGKQKLWQKAESVVG--NLRQSGRTPDLKTWNSLMSAYAQ 799
Query: 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF 263
G +RAR ++ + + T E I ++ G E V +++ G +
Sbjct: 800 CGCYERARAIFNTMMRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSS 859
Query: 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323
+ ++D AG + +I K G I Y ++ K + A + M+
Sbjct: 860 ILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEME 919
Query: 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383
K ++ N+++ + KT++V +K GL P+ TY+ L++ R E
Sbjct: 920 EANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPE 979
Query: 384 VGLMLLSQAKEDGVIPNLVMFKCIIGMCSRR--YEKARTLNEHVLS 427
G +L+ Q + G+ P L +K +I ++ E+A L E +LS
Sbjct: 980 EGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLS 1025
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 69/338 (20%), Positives = 148/338 (43%), Gaps = 10/338 (2%)
Query: 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVD 144
P+PT+ + N+L+ E + V+ +Q+ G K ++ A++G +V
Sbjct: 818 PSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVK 877
Query: 145 AMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMK 199
++ ++K P ++ +I + V A +++EM V+ +++K
Sbjct: 878 KIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVE--LAIWNSMLK 935
Query: 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259
+ +VY+ I + ++ Y I + E + M G+ P
Sbjct: 936 MYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDP 995
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
+LI G +E A ++ +E ++G+ + Y ++M ++ + KA +L
Sbjct: 996 KLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLL 1055
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
+ MK+ ++PT++TM+ L+ + + +VLS++K + T+ YS ++ A R
Sbjct: 1056 QMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRS 1115
Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK 417
D G+ L + K++G+ P+ ++ C + S EK
Sbjct: 1116 KDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEK 1153
Score = 56.2 bits (134), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 76/375 (20%), Positives = 155/375 (41%), Gaps = 63/375 (16%)
Query: 39 GRISECIDLLEDMERKG--------LLDMDKVYHA-RFFNVCKSQKAIKEAFRFFKLVPN 89
GR+ E ++E+++ G LL +D A F V K ++K A
Sbjct: 836 GRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYL------ 889
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI---TTCAKSGKVDAM 146
PT+ + M++ + K A ++ ++EA K + ++ +++ T K +
Sbjct: 890 PTIRLYRMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQV 949
Query: 147 FENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
++ +K PD +N LI + + + ++ +M +DP T +L+ A
Sbjct: 950 YQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLLMQQMRN--LGLDPKLDTYKSLISAF 1007
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261
+++A +++ +++ KG+ D
Sbjct: 1008 GKQKCLEQAEQLF-----------------------------------EELLSKGLKLDR 1032
Query: 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321
F ++ + +G A ++LQ KN GI + + LM + S++ N Q+A ++ +
Sbjct: 1033 SFYHTMMKISRDSGSDSKAEKLLQMMKNAGIEPTLATMHLLMVSYSSSGNPQEAEKVLSN 1092
Query: 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE-RKD 380
+K +++ T +++I A +E L +MK GL P+ ++ + A K+
Sbjct: 1093 LKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKE 1152
Query: 381 DVEVGLMLLSQAKED 395
+EV MLL +A ED
Sbjct: 1153 KIEV--MLLLKALED 1165
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 114/265 (43%), Gaps = 25/265 (9%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG---KVDAM 146
P +T+N L+ + + E + +++ ++ GL Y +LI+ K + + +
Sbjct: 960 PDETTYNTLIIMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQL 1019
Query: 147 FENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEM-NAEVHPVDPDHITIGALMKA 200
FE + K DR ++ ++ SG+ +A +L M NA ++P T+ LM +
Sbjct: 1020 FEELLSKGLKLDRSFYHTMMKISRDSGSDSKAEKLLQMMKNA---GIEPTLATMHLLMVS 1076
Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260
+++G A +V + ++ T Y+ I+ ++ D+ +M K+G+ PD
Sbjct: 1077 YSSSGNPQEAEKVLSNLKDTEVELTTLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPD 1136
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA----CSNAKNWQKAL 316
+ + A + + +L+ ++ G + I L G S W
Sbjct: 1137 HRIWTCFVRAASFSKEKIEVMLLLKALEDIGFDLPI---RLLAGRPELLVSEVDGW---- 1189
Query: 317 ELYEHMKSIKLKPTVSTMNALITAL 341
+E +KSI+ ++ +NAL+ L
Sbjct: 1190 --FEKLKSIEDNAALNFVNALLNLL 1212
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 6/225 (2%)
Query: 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287
+YT I + W+ A SV ++ + G PD ++L+ G E A I
Sbjct: 754 MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTM 813
Query: 288 KNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347
G S + S + L+ A ++ + E ++ + K + S++ ++ A +
Sbjct: 814 MRDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNI 873
Query: 348 PKTMEVLSDMKSLGLCPNTITYSI---LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404
+ ++ S MK+ G P Y + LL +R D E+ ++S+ +E L ++
Sbjct: 874 FEVKKIYSSMKAAGYLPTIRLYRMMIELLCKGKRVRDAEI---MVSEMEEANFKVELAIW 930
Query: 405 KCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 449
++ M + + +T+ + +G E + +L +M R+
Sbjct: 931 NSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRD 975
Score = 33.9 bits (76), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 91/517 (17%), Positives = 206/517 (39%), Gaps = 59/517 (11%)
Query: 31 SYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL 86
+YN L+ R+ + ++ + M++ G D++ + ++ Q + A + +K
Sbjct: 369 TYNSLLYAFARERNTEKVKEVYQQMQKMGF-GKDEMTYNTIIHMYGKQGQLDLALQLYKD 427
Query: 87 VP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141
+ NP T+ +L+ + + A ++ + + G+K + Y+ LI AK+G
Sbjct: 428 MKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDVGIKPTLQTYSALICGYAKAG 487
Query: 142 KVDA--------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT 193
K + + KPD + ++ ++ + +A+ + +M ++ H P +
Sbjct: 488 KREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHT--PSYTL 545
Query: 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC-CSQTGDWEFACSVYDDM 252
++ + D ++ + + + E+ ++ + C + ++
Sbjct: 546 YELMILGLMKENRSDDIQKTIRDMEELCGMNPLEISSVLVKGECFDLAARQLKVAI---- 601
Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
T + ++ LS L ++ +G+ AFE+L+ K + +L+ N
Sbjct: 602 TNGYELENDTLLSILGSYSS-SGRHSEAFELLEFLKEHASGSKRLITEALIVLHCKVNNL 660
Query: 313 QKALELYEHMKSIKLKPTV-------STMNALITALCDGDQ-LPKTMEVLSDMKSLGL-C 363
AL+ Y P V STM + C ++ + +V SD++ G
Sbjct: 661 SAALDEY------FADPCVHGWCFGSSTMYETLLHCCVANEHYAEASQVFSDLRLSGCEA 714
Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGV-IPNLVMFKCIIGMCSRR--YEKART 420
++ S+++V C + E +++QA+ G M+ II ++ ++KA +
Sbjct: 715 SESVCKSMVVVYC-KLGFPETAHQVVNQAETKGFHFACSPMYTDIIEAYGKQKLWQKAES 773
Query: 421 LNEHVLSFNSGRPQIENKWTSL------------ALMVYREAIVAGTIPTVEVVSKVLGC 468
+ ++ SGR W SL A ++ + G PTVE ++ +L
Sbjct: 774 VVGNLR--QSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMMRDGPSPTVESINILLHA 831
Query: 469 LQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFG 505
L + + +VE L + +S++ ++D F
Sbjct: 832 LCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFA 868
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 94/371 (25%), Positives = 169/371 (45%), Gaps = 21/371 (5%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149
P +STFN+L+ + A +L + GL D K +TT++ + G +D
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR- 245
Query: 150 VKPDRVVF---------NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200
++ V F N ++ + G V+ A + + EM+ + PD T L+
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQ-DGFFPDQYTFNTLVNG 304
Query: 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVI 258
AG V A E+ ++ + P+VYT I+ + G+ + A V D M +
Sbjct: 305 LCKAGHVKHAIEIMDVMLQEGYD--PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCS 362
Query: 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318
P+ V + LI +VE A E+ + ++GI + +++SL+ +N + A+EL
Sbjct: 363 PNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMEL 422
Query: 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378
+E M+S +P T N LI +LC +L + + +L M+ G + ITY+ L+ +
Sbjct: 423 FEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCK 482
Query: 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHVLSFNSGRPQIE 436
+ + + + GV N V + +I G+C SRR E A L + ++ Q
Sbjct: 483 ANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM----EGQKP 538
Query: 437 NKWTSLALMVY 447
+K+T +L+ +
Sbjct: 539 DKYTYNSLLTH 549
Score = 103 bits (256), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 109/459 (23%), Positives = 201/459 (43%), Gaps = 32/459 (6%)
Query: 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST 94
L R ++ I +LEDM GL+ +K + + + + A R + + S
Sbjct: 199 LCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIE-EGDLDGALRIREQMVEFGCSW 257
Query: 95 FNMLMSVCASSKDSEGAFQ-VLRLVQEA----GLKADCKLYTTLITTCAKSGKV------ 143
N+ ++V EG + L +QE G D + TL+ K+G V
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317
Query: 144 -DAMF-ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
D M E PD +N++I+ + G V A +VL +M P+ +T L+
Sbjct: 318 MDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT--RDCSPNTVTYNTLISTL 375
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTI--AINCCSQTGDWEFACSVYDDMTKKGVIP 259
QV+ A E+ +++ I P+V T I T + A ++++M KG P
Sbjct: 376 CKENQVEEATELARVLTSKGI--LPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEP 433
Query: 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319
DE + LID GK++ A +L++ + G + +I+Y++L+ A ++A E++
Sbjct: 434 DEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIF 493
Query: 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379
+ M+ + T N LI LC ++ +++ M G P+ TY+ LL R
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRG 553
Query: 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMC-SRRYEKARTLNEHV------LSFNSG 431
D++ ++ +G P++V + +I G+C + R E A L + L+ ++
Sbjct: 554 GDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAY 613
Query: 432 RPQIE----NKWTSLALMVYREAIVAGTIPTVEVVSKVL 466
P I+ + T+ A+ ++RE + P V +++
Sbjct: 614 NPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIV 652
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/379 (22%), Positives = 162/379 (42%), Gaps = 19/379 (5%)
Query: 66 RFFNVCKSQKAIKEAFRFFKLVPN-PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124
+ + +SQ A R F L P S L G+F ++ + E
Sbjct: 52 KLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKS 111
Query: 125 ADCKLYTTLITTCAKS-----------GKVDAMFEN--VKPDRVVFNALITACGQSGAVD 171
+ C++ T+ +S VD M + +KPD +N ++ ++
Sbjct: 112 SRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLK 171
Query: 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
A+M+ V + PD T L+KA A Q+ A + + + Y + + +T
Sbjct: 172 LVEISHAKMS--VWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTT 229
Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ- 290
+ + GD + A + + M + G V ++ ++ G+VE A +QE NQ
Sbjct: 230 VMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQD 289
Query: 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350
G ++++L+ A + + A+E+ + M P V T N++I+ LC ++ +
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349
Query: 351 MEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-G 409
+EVL M + PNT+TY+ L+ +++ VE L G++P++ F +I G
Sbjct: 350 VEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 409
Query: 410 MC-SRRYEKARTLNEHVLS 427
+C +R + A L E + S
Sbjct: 410 LCLTRNHRVAMELFEEMRS 428
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/444 (20%), Positives = 180/444 (40%), Gaps = 32/444 (7%)
Query: 12 PYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC 71
P + + Y++DV ++ + L +G I+ C+D+ ++ + L D A F
Sbjct: 63 PSVSVEKGKYSYDVESLINKLSSLPPRGSIARCLDIFKN--KLSLNDF-----ALVFKEF 115
Query: 72 KSQKAIKEAFRFFKLVP-----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD 126
+ + + R FK + P + +++S+ + +V + G+
Sbjct: 116 AGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRS 175
Query: 127 CKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG-AVDRAFDVL 177
YT LI ++G+ + E + P + +N +I AC + G + +
Sbjct: 176 VFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVINACARGGLDWEGLLGLF 235
Query: 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237
AEM E + PD +T L+ ACA G D A V++ ++ I Y+ +
Sbjct: 236 AEMRHE--GIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFG 293
Query: 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297
+ E C + +M G +PD + L++ +G ++ A + + + G +
Sbjct: 294 KLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNAN 353
Query: 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357
+YS L+ + + +L+ MKS P +T N LI +G + + + DM
Sbjct: 354 TYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDM 413
Query: 358 KSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEK 417
+ P+ TY ++ AC + E +L + ++P+ + +I + +
Sbjct: 414 VEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVI----EAFGQ 469
Query: 418 ARTLNEHVLSFNS-----GRPQIE 436
A E +++FN+ P IE
Sbjct: 470 AALYEEALVAFNTMHEVGSNPSIE 493
Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/379 (22%), Positives = 162/379 (42%), Gaps = 20/379 (5%)
Query: 22 AHDVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI 77
+ VS + SY LI R GR ++LL+ M+ + + Y+ N C
Sbjct: 169 SQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNT-VINACARGGLD 227
Query: 78 KEAF-RFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132
E F + + P + T+N L+S CA + A V R + + G+ D Y+
Sbjct: 228 WEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSH 287
Query: 133 LITTCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184
L+ T K +++ + + + PD +N L+ A +SG++ A V +M A
Sbjct: 288 LVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAA- 346
Query: 185 HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244
P+ T L+ +G+ D R+++ + N Y I I + G ++
Sbjct: 347 -GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKE 405
Query: 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304
+++ DM ++ + PD +I G G E A +ILQ I +Y+ ++
Sbjct: 406 VVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIE 465
Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
A A +++AL + M + P++ T ++L+ + G + ++ +LS + G+
Sbjct: 466 AFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPR 525
Query: 365 NTITYSILLVACERKDDVE 383
N T++ + A ++ E
Sbjct: 526 NRDTFNAQIEAYKQGGKFE 544
Score = 96.3 bits (238), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/396 (19%), Positives = 166/396 (41%), Gaps = 20/396 (5%)
Query: 30 HSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85
H Y +I R+G + +C+++ ++M +G+ Y A N + +
Sbjct: 142 HIYTIMISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTA-LINAYGRNGRYETSLELLD 200
Query: 86 LVPN----PTLSTFNMLMSVCASSK-DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
+ N P++ T+N +++ CA D EG + ++ G++ D Y TL++ CA
Sbjct: 201 RMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIR 260
Query: 141 G---KVDAMFENVK-----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192
G + + +F + PD ++ L+ G+ +++ D+L EM + PD
Sbjct: 261 GLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSL--PDIT 318
Query: 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252
+ L++A A +G + A V+ + Y++ +N Q+G ++ ++ +M
Sbjct: 319 SYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEM 378
Query: 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312
PD + LI+ G G + + + + I + +Y ++ AC
Sbjct: 379 KSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLH 438
Query: 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
+ A ++ ++M + + P+ +I A + + + M +G P+ T+ L
Sbjct: 439 EDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSL 498
Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408
L + R V+ +LS+ + G+ N F I
Sbjct: 499 LYSFARGGLVKESEAILSRLVDSGIPRNRDTFNAQI 534
Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 136/305 (44%), Gaps = 15/305 (4%)
Query: 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE- 148
P ++++N+L+ A S + A V +Q AG + Y+ L+ +SG+ D + +
Sbjct: 315 PDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQL 374
Query: 149 -------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201
N PD +N LI G+ G + +M E ++PD T ++ AC
Sbjct: 375 FLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEE--NIEPDMETYEGIIFAC 432
Query: 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD- 260
G + AR++ + + +I + + YT I Q +E A ++ M + G P
Sbjct: 433 GKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSI 492
Query: 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320
E F S L FA G V+ + IL + GI ++++ + A +++A++ Y
Sbjct: 493 ETFHSLLYSFA-RGGLVKESEAILSRLVDSGIPRNRDTFNAQIEAYKQGGKFEEAVKTYV 551
Query: 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA---CE 377
M+ + P T+ A+++ + + E +MK+ + P+ + Y ++L E
Sbjct: 552 DMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEMKASDILPSIMCYCMMLAVYGKTE 611
Query: 378 RKDDV 382
R DDV
Sbjct: 612 RWDDV 616
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 111/494 (22%), Positives = 188/494 (38%), Gaps = 70/494 (14%)
Query: 29 LHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84
L +Y+ L+ + R+ + DLL +M G L Y+ KS +IKEA F
Sbjct: 282 LTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKS-GSIKEAMGVF 340
Query: 85 KLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140
+ P +T+++L+++ S + Q+ ++ + D Y LI +
Sbjct: 341 HQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEG 400
Query: 141 GKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE--------- 183
G D + EN++PD + +I ACG+ G + A +L M A
Sbjct: 401 GYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAY 460
Query: 184 ----------------------VHPV--DPDHITIGALMKACANAGQVDRAREVYKMIHK 219
+H V +P T +L+ + A G V + + +
Sbjct: 461 TGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVD 520
Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
I + + I Q G +E A Y DM K PDE L A++ A V+
Sbjct: 521 SGIPRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDE 580
Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
E +E K I I+ Y ++ + W EL E M S ++ + +I
Sbjct: 581 CREQFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIK 640
Query: 340 ALCDGDQLPKTME-VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398
D D + +E VL + S G Y+ LL A E +L++A + G+
Sbjct: 641 GDYDDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLF 700
Query: 399 PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMV--YREAIVAGTI 456
P L + K N+ V S + R +T+L++ + + ++ G +
Sbjct: 701 PEL-------------FRK----NKLVWSVDVHRMSEGGMYTALSVWLNDINDMLLKGDL 743
Query: 457 PTVEVVSKVLGCLQ 470
P + VV V G L+
Sbjct: 744 PQLAVVVSVRGQLE 757
>sp|Q8GYL7|PP361_ARATH Pentatricopeptide repeat-containing protein At5g02830,
chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2
SV=3
Length = 852
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 124/553 (22%), Positives = 223/553 (40%), Gaps = 114/553 (20%)
Query: 132 TLITTCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183
T+I C G D + EN+KP+ V N+L+ + D + + N +
Sbjct: 272 TMIDVCGLCGDYVKSRYIYEDLLKENIKPNIYVINSLMNV----NSHDLGYTLKVYKNMQ 327
Query: 184 VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV----YTIAINCCSQT 239
+ V D + L+K C AG+VD A+++YK + G ++ Y I +
Sbjct: 328 ILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLDAFTYCTIIKVFADA 387
Query: 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299
W++A V DDM GV P+ S+LI +AG VE A + +E G +
Sbjct: 388 KMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEPNSQCF 447
Query: 300 SSLMGACSNAKNWQKALELYEHMKSIKL-------------------------------- 327
+ L+ AC A + +A L++ K +
Sbjct: 448 NILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPNILKNNGPGSLVNR 507
Query: 328 ---------------KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372
KPT +T N L+ A G + E++ +MKSLGL PN IT+S L
Sbjct: 508 NSNSPYIQASKRFCFKPTTATYNILLKAC--GTDYYRGKELMDEMKSLGLSPNQITWSTL 565
Query: 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS---------------RRYEK 417
+ C DVE + +L G P++V + I +C+ RRY+
Sbjct: 566 IDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSLFEEMRRYQ- 624
Query: 418 ARTLNEHVLSFNSGRPQIENKWTSL-----ALMVYREAIVAGTIPTVEVVSKVLGCLQLP 472
+ + +++N+ + +K+ SL L +Y++ AG P + +++
Sbjct: 625 ---IKPNWVTYNT-LLKARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELI------ 674
Query: 473 YNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEI 532
+ E +++ G S D + D G+ R SLL E + + +
Sbjct: 675 --EEWCEGVIQENGQSQDKIS--------DQEGDNAGRPVSLLIEKVATHMQERTAGN-- 722
Query: 533 PVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDI 592
+ +D + L A++ +L +L+ ++ G + + ++L+ + + +V G++ I +
Sbjct: 723 -LAIDLQGLTKIEARLVVLAVLRMIKEDYMRGDVVID-DVLIIIGTDEANTVSGKQEITV 780
Query: 593 AERTTQAIAALLR 605
E A+ LLR
Sbjct: 781 QE----ALVKLLR 789
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/377 (23%), Positives = 167/377 (44%), Gaps = 75/377 (19%)
Query: 24 DVSEQLHSYNRLIRQGRISECIDLLED-------MERKGLLDMDKVYHARFFNVCKSQKA 76
DV+ + SYN L++ ++ +DL +D ME GLL +D
Sbjct: 330 DVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLD---------------- 373
Query: 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITT 136
AF T+ ++ V A +K + A +V ++ G+ + +++LI+
Sbjct: 374 ---AF------------TYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISA 418
Query: 137 CAKSGKVDA---MFENV-----KPDRVVFNALITACGQSGAVDRAFDVL-----AEMNAE 183
CA +G V+ +FE + +P+ FN L+ AC ++ DRAF + + +N
Sbjct: 419 CANAGLVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNES 478
Query: 184 VHPVD---------PDHIT---IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231
++ D P+ + G+L+ +N+ + ++ ++ K T Y I
Sbjct: 479 LYADDIVSKGRTSSPNILKNNGPGSLVNRNSNSPYIQASK-------RFCFKPTTATYNI 531
Query: 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291
+ C D+ + D+M G+ P+++ S LID G +G VE A IL+ + G
Sbjct: 532 LLKACGT--DYYRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAG 589
Query: 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351
+++Y++ + C+ K + A L+E M+ ++KP T N L+ A L +
Sbjct: 590 TRPDVVAYTTAIKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVR 649
Query: 352 EVLS---DMKSLGLCPN 365
+ L+ DM++ G PN
Sbjct: 650 QCLAIYQDMRNAGYKPN 666
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/343 (23%), Positives = 144/343 (41%), Gaps = 17/343 (4%)
Query: 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248
P+ ++ C G ++R +Y+ + K NIK P +Y I + D + V
Sbjct: 265 PNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIK--PNIYVINSLMNVNSHDLGYTLKV 322
Query: 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS----VGIISYSSLMG 304
Y +M V D + L+ AG+V+ A +I +EAK S + +Y +++
Sbjct: 323 YKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLDAFTYCTIIK 382
Query: 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364
++AK W+ AL++ + MKS+ + P T ++LI+A + + + + +M + G P
Sbjct: 383 VFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCEP 442
Query: 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEH 424
N+ ++ILL AC + L K V +L + K RT + +
Sbjct: 443 NSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIV--------SKGRTSSPN 494
Query: 425 VLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN 484
+L N + S + + T T ++ K G + E +++
Sbjct: 495 ILKNNGPGSLVNRNSNSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDE--MKS 552
Query: 485 LGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 527
LG+S + + S L + G G+ + A +L S G P V
Sbjct: 553 LGLSPNQITWSTLIDMCGGSGDVEG-AVRILRTMHSAGTRPDV 594
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 122/525 (23%), Positives = 210/525 (40%), Gaps = 65/525 (12%)
Query: 29 LHSYNRLIR----QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ----KAIKEA 80
+H + LIR +GR+ + LL++M+ L D D V +NVC + A
Sbjct: 203 VHLFTTLIRGFAKEGRVDSALSLLDEMKSSSL-DADIV----LYNVCIDSFGKVGKVDMA 257
Query: 81 FRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTLIT 135
++FF + P T+ ++ V + + A ++ + E + C Y T+I
Sbjct: 258 WKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHL-EKNRRVPCTYAYNTMIM 316
Query: 136 TCAKSGKVDAMFENVK--------PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
+GK D + ++ P + +N ++T + G VD A V EM + P
Sbjct: 317 GYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAP- 375
Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN----CCSQTGDWE 243
+ T L+ AG++D A E+ + K + P V T+ I C SQ D
Sbjct: 376 --NLSTYNILIDMLCRAGKLDTAFELRDSMQKAGL--FPNVRTVNIMVDRLCKSQKLDE- 430
Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
AC+++++M K PDE+ +LID G G+V+ A+++ ++ + I Y+SL+
Sbjct: 431 -ACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLI 489
Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
N + ++Y+ M + P + +N + + + K + ++K+
Sbjct: 490 KNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFV 549
Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII-GMCSRRYEKARTLN 422
P+ +YSIL+ + L KE G + + + +I G C K +N
Sbjct: 550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFC-----KCGKVN 604
Query: 423 EHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLV 482
+ A + E G PTV V+ L D L
Sbjct: 605 K-------------------AYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLF 645
Query: 483 ENLGVSADALKRSNLCSLIDGFGEYD--PRAFSLLEEAASFGIVP 525
E L SLIDGFG+ A+ +LEE G+ P
Sbjct: 646 EEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTP 690
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/436 (21%), Positives = 181/436 (41%), Gaps = 54/436 (12%)
Query: 24 DVSEQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKE 79
D + L +YN LI R G++ +L + M++ GL + + +CKSQK + E
Sbjct: 372 DAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQK-LDE 430
Query: 80 AFRFFK----LVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLIT 135
A F+ V P TF L+ + A++V + ++ + + +YT+LI
Sbjct: 431 ACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIK 490
Query: 136 TCAKSGKV--------DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187
G+ D + +N PD + N + ++G ++ + E+ A
Sbjct: 491 NFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFV- 549
Query: 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247
PD + L+ AG + E++ + + Y I I+ + G A
Sbjct: 550 -PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQ 608
Query: 248 VYDDMTKKGVIP------------------DEVFL-----------------SALIDFAG 272
+ ++M KG P DE ++ S+LID G
Sbjct: 609 LLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFG 668
Query: 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS 332
G+++ A+ IL+E +G++ + +++SL+ A A+ +AL ++ MK +K P
Sbjct: 669 KVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQV 728
Query: 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392
T LI LC + K +M+ G+ P+TI+Y+ ++ + ++ L +
Sbjct: 729 TYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRF 788
Query: 393 KEDGVIPNLVMFKCII 408
K +G +P+ + +I
Sbjct: 789 KANGGVPDSACYNAMI 804
Score = 86.3 bits (212), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/349 (20%), Positives = 138/349 (39%), Gaps = 30/349 (8%)
Query: 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK 219
++ C ++ + +DV+ M P L+ A + D +++ + +
Sbjct: 139 MVLGCVKANKLREGYDVVQMMRK--FKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQE 196
Query: 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279
+ T ++T I ++ G + A S+ D+M + D V + ID G GKV+
Sbjct: 197 LGYEPTVHLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDM 256
Query: 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339
A++ E + G+ ++Y+S++G A +A+E++EH++ + P N +I
Sbjct: 257 AWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIM 316
Query: 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399
+ + +L ++ G P+ I Y+ +L + V+ L + + K+D P
Sbjct: 317 GYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAA-P 375
Query: 400 NLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIP 457
NL + +I M R + + A L + + AG P
Sbjct: 376 NLSTYNILIDMLCRAGKLDTAFELRDSMQK-------------------------AGLFP 410
Query: 458 TVEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGE 506
V V+ ++ L D + E + CSLIDG G+
Sbjct: 411 NVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGK 459
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/333 (20%), Positives = 147/333 (44%), Gaps = 18/333 (5%)
Query: 75 KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLI 134
+A+ E + + VP+ ++++L+ + + +++ ++E G D + Y +I
Sbjct: 537 RAMFEEIKARRFVPDA--RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVI 594
Query: 135 TTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186
K GKV+ ++ +P V + ++I + +D A+ + E A+
Sbjct: 595 DGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE--AKSKR 652
Query: 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG-TPEVYTIA--INCCSQTGDWE 243
++ + + +L+ G++D E Y ++ + KG TP +YT ++ + +
Sbjct: 653 IELNVVIYSSLIDGFGKVGRID---EAYLILEELMQKGLTPNLYTWNSLLDALVKAEEIN 709
Query: 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303
A + M + P++V LI+ K AF QE + QG+ ISY++++
Sbjct: 710 EALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMI 769
Query: 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363
+ A N +A L++ K+ P + NA+I L +G++ + + + GL
Sbjct: 770 SGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLP 829
Query: 364 PNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396
+ T +LL + D +E ++ + +E G
Sbjct: 830 IHNKTCVVLLDTLHKNDCLEQAAIVGAVLRETG 862
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 240,370,751
Number of Sequences: 539616
Number of extensions: 9914743
Number of successful extensions: 32371
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 136
Number of HSP's that attempted gapping in prelim test: 25171
Number of HSP's gapped (non-prelim): 2578
length of query: 670
length of database: 191,569,459
effective HSP length: 124
effective length of query: 546
effective length of database: 124,657,075
effective search space: 68062762950
effective search space used: 68062762950
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)