Query 005905
Match_columns 670
No_of_seqs 761 out of 3812
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 15:29:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 9E-109 2E-113 934.4 79.2 649 22-670 367-1060(1060)
2 PLN03077 Protein ECB2; Provisi 100.0 8.1E-67 1.8E-71 603.6 51.3 545 27-611 150-810 (857)
3 PLN03081 pentatricopeptide (PP 100.0 3.5E-64 7.6E-69 568.3 48.6 505 32-579 94-619 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 1.5E-58 3.3E-63 534.7 48.0 486 26-527 52-657 (857)
5 PLN03218 maturation of RBCL 1; 100.0 5.8E-56 1.2E-60 503.9 57.4 439 27-492 435-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 8.3E-53 1.8E-57 475.7 44.5 402 8-423 106-518 (697)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 8.9E-22 1.9E-26 231.8 57.9 472 34-521 338-866 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 1.3E-21 2.7E-26 230.5 58.0 436 67-519 437-898 (899)
9 PRK11788 tetratricopeptide rep 99.9 6.6E-19 1.4E-23 186.6 32.4 300 71-402 45-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 3.1E-18 6.8E-23 181.4 35.5 241 163-410 78-324 (389)
11 PRK15174 Vi polysaccharide exp 99.8 8.6E-16 1.9E-20 171.4 44.5 336 67-412 48-398 (656)
12 KOG4626 O-linked N-acetylgluco 99.8 6.3E-16 1.4E-20 156.9 36.2 417 32-490 55-488 (966)
13 TIGR00990 3a0801s09 mitochondr 99.8 4.4E-14 9.5E-19 158.1 49.5 376 33-420 135-563 (615)
14 KOG4626 O-linked N-acetylgluco 99.8 1.2E-15 2.7E-20 154.8 31.4 392 37-470 94-501 (966)
15 PRK11447 cellulose synthase su 99.8 2E-13 4.3E-18 162.9 55.1 485 29-528 116-748 (1157)
16 PRK11447 cellulose synthase su 99.7 8.8E-14 1.9E-18 165.9 47.6 352 34-394 278-699 (1157)
17 PRK15174 Vi polysaccharide exp 99.7 4.2E-13 9.1E-18 149.9 45.0 316 95-423 45-376 (656)
18 TIGR00990 3a0801s09 mitochondr 99.7 4.6E-13 1E-17 149.9 41.1 348 33-395 168-571 (615)
19 PRK10049 pgaA outer membrane p 99.7 3.7E-12 8E-17 145.4 48.2 389 29-430 18-458 (765)
20 KOG4422 Uncharacterized conser 99.7 7.2E-12 1.6E-16 122.7 41.6 308 31-344 121-481 (625)
21 PRK09782 bacteriophage N4 rece 99.7 1.5E-11 3.2E-16 140.9 49.6 463 37-527 56-710 (987)
22 PRK14574 hmsH outer membrane p 99.6 6.7E-11 1.5E-15 132.8 48.1 349 37-394 46-478 (822)
23 KOG4422 Uncharacterized conser 99.6 2.2E-11 4.7E-16 119.4 36.8 303 91-400 115-467 (625)
24 PRK10049 pgaA outer membrane p 99.6 5.3E-11 1.2E-15 136.0 46.7 386 67-465 21-466 (765)
25 PRK09782 bacteriophage N4 rece 99.5 3.6E-10 7.8E-15 129.6 42.8 348 27-396 315-707 (987)
26 PRK14574 hmsH outer membrane p 99.5 9.3E-10 2E-14 123.7 45.1 360 34-402 111-518 (822)
27 KOG2002 TPR-containing nuclear 99.5 8.6E-10 1.9E-14 118.9 39.2 200 205-407 544-757 (1018)
28 KOG2003 TPR repeat-containing 99.5 7.7E-11 1.7E-15 116.1 28.8 203 204-413 503-706 (840)
29 KOG1126 DNA-binding cell divis 99.5 5.3E-11 1.2E-15 123.6 27.4 278 76-361 334-621 (638)
30 KOG2076 RNA polymerase III tra 99.4 3.2E-09 6.9E-14 113.9 38.6 361 28-394 142-554 (895)
31 KOG2002 TPR-containing nuclear 99.4 6.9E-09 1.5E-13 112.2 40.7 386 23-413 268-728 (1018)
32 PF13429 TPR_15: Tetratricopep 99.4 2.6E-12 5.6E-17 129.2 13.0 255 67-357 14-274 (280)
33 PRK10747 putative protoheme IX 99.4 1.8E-09 3.9E-14 113.8 33.7 283 74-394 97-389 (398)
34 COG2956 Predicted N-acetylgluc 99.4 2.6E-09 5.6E-14 101.7 30.1 232 25-290 36-278 (389)
35 KOG1155 Anaphase-promoting com 99.4 2.1E-08 4.5E-13 100.0 36.9 233 153-394 261-494 (559)
36 PRK10747 putative protoheme IX 99.3 4.6E-09 9.9E-14 110.7 34.8 267 105-413 97-373 (398)
37 COG2956 Predicted N-acetylgluc 99.3 9.5E-09 2.1E-13 97.9 32.8 268 105-411 48-325 (389)
38 TIGR00540 hemY_coli hemY prote 99.3 4.4E-09 9.4E-14 111.5 34.8 290 73-394 96-398 (409)
39 KOG2003 TPR repeat-containing 99.3 3.8E-09 8.1E-14 104.4 30.7 205 165-381 501-709 (840)
40 PF13429 TPR_15: Tetratricopep 99.3 1.3E-11 2.8E-16 124.1 12.9 262 98-394 14-276 (280)
41 PF13041 PPR_2: PPR repeat fam 99.3 9.5E-12 2E-16 88.3 6.5 50 329-378 1-50 (50)
42 TIGR00540 hemY_coli hemY prote 99.3 3E-08 6.5E-13 105.1 34.5 281 104-421 96-392 (409)
43 KOG1155 Anaphase-promoting com 99.2 5.5E-08 1.2E-12 97.1 33.0 217 101-324 271-494 (559)
44 KOG0547 Translocase of outer m 99.2 4.4E-08 9.6E-13 98.3 32.2 77 34-112 124-203 (606)
45 TIGR02521 type_IV_pilW type IV 99.2 1E-08 2.2E-13 99.7 27.5 195 195-393 35-230 (234)
46 KOG1126 DNA-binding cell divis 99.2 4.7E-09 1E-13 109.4 25.6 276 39-330 333-625 (638)
47 KOG2076 RNA polymerase III tra 99.2 1.2E-07 2.7E-12 102.0 36.8 314 73-393 151-510 (895)
48 TIGR02521 type_IV_pilW type IV 99.2 1E-08 2.2E-13 99.6 27.0 202 152-359 29-231 (234)
49 PF13041 PPR_2: PPR repeat fam 99.2 3.5E-11 7.6E-16 85.4 6.5 50 90-139 1-50 (50)
50 KOG0495 HAT repeat protein [RN 99.1 1.5E-05 3.3E-10 83.2 44.0 352 26-394 377-747 (913)
51 PRK12370 invasion protein regu 99.1 7.6E-08 1.7E-12 106.1 29.8 214 170-394 277-501 (553)
52 COG3071 HemY Uncharacterized e 99.1 4.6E-07 9.9E-12 89.4 31.4 229 154-393 153-388 (400)
53 KOG0495 HAT repeat protein [RN 99.1 6.4E-06 1.4E-10 85.9 40.1 372 37-424 452-842 (913)
54 PRK12370 invasion protein regu 99.1 1E-07 2.3E-12 105.0 29.1 218 167-396 317-536 (553)
55 KOG0547 Translocase of outer m 99.1 1.1E-06 2.4E-11 88.5 32.3 314 71-395 125-491 (606)
56 KOG4318 Bicoid mRNA stability 99.0 1E-07 2.2E-12 102.1 25.8 263 88-381 21-286 (1088)
57 KOG1915 Cell cycle control pro 99.0 1.9E-05 4E-10 79.5 39.6 345 37-395 85-466 (677)
58 COG3071 HemY Uncharacterized e 99.0 3.1E-06 6.7E-11 83.6 33.0 241 161-413 125-373 (400)
59 KOG2047 mRNA splicing factor [ 99.0 1.4E-05 3.1E-10 83.2 38.6 281 35-322 112-451 (835)
60 KOG4318 Bicoid mRNA stability 99.0 2.1E-07 4.5E-12 99.8 26.1 270 46-345 11-285 (1088)
61 KOG1129 TPR repeat-containing 99.0 6.8E-08 1.5E-12 92.1 18.9 230 158-395 227-458 (478)
62 KOG1173 Anaphase-promoting com 99.0 3.7E-06 7.9E-11 86.5 32.2 278 123-411 240-532 (611)
63 KOG1129 TPR repeat-containing 98.9 1.8E-07 3.9E-12 89.3 21.1 231 126-365 222-461 (478)
64 KOG1173 Anaphase-promoting com 98.9 7.6E-07 1.7E-11 91.3 26.8 268 98-376 250-532 (611)
65 KOG1840 Kinesin light chain [C 98.9 4.8E-07 1E-11 95.5 25.4 239 154-393 199-477 (508)
66 PF12569 NARP1: NMDA receptor- 98.9 5.1E-06 1.1E-10 88.9 33.2 294 68-394 11-333 (517)
67 PRK11189 lipoprotein NlpI; Pro 98.9 3E-06 6.4E-11 85.6 29.2 221 167-397 39-267 (296)
68 KOG2047 mRNA splicing factor [ 98.9 0.00019 4.2E-09 75.1 41.6 378 22-409 166-630 (835)
69 KOG1915 Cell cycle control pro 98.9 0.00017 3.6E-09 72.9 41.6 370 72-454 84-501 (677)
70 KOG2376 Signal recognition par 98.9 5.6E-05 1.2E-09 78.4 36.6 382 31-423 18-515 (652)
71 KOG1840 Kinesin light chain [C 98.8 1.1E-06 2.4E-11 92.7 24.8 200 159-358 246-477 (508)
72 PF12569 NARP1: NMDA receptor- 98.8 5.1E-06 1.1E-10 88.9 29.2 288 35-359 14-333 (517)
73 COG3063 PilF Tfp pilus assembl 98.8 1.2E-05 2.6E-10 73.8 25.1 196 195-394 39-235 (250)
74 KOG1156 N-terminal acetyltrans 98.7 0.00023 5E-09 74.7 36.4 356 29-396 8-435 (700)
75 PRK11189 lipoprotein NlpI; Pro 98.7 1.6E-05 3.4E-10 80.3 27.6 206 155-372 65-276 (296)
76 COG3063 PilF Tfp pilus assembl 98.7 2.5E-05 5.3E-10 71.8 24.2 208 156-372 37-246 (250)
77 KOG1156 N-terminal acetyltrans 98.7 0.0011 2.3E-08 69.9 41.1 348 37-397 87-470 (700)
78 PF04733 Coatomer_E: Coatomer 98.6 6.1E-06 1.3E-10 82.2 21.9 248 33-290 9-265 (290)
79 cd05804 StaR_like StaR_like; a 98.6 0.00016 3.5E-09 75.5 33.3 266 100-395 51-336 (355)
80 cd05804 StaR_like StaR_like; a 98.6 0.00023 5.1E-09 74.2 34.1 226 163-394 52-292 (355)
81 KOG0985 Vesicle coat protein c 98.6 0.00022 4.7E-09 78.1 32.8 341 22-413 981-1325(1666)
82 PF04733 Coatomer_E: Coatomer 98.6 3.6E-06 7.8E-11 83.8 17.8 129 262-394 132-264 (290)
83 KOG1174 Anaphase-promoting com 98.6 0.0012 2.7E-08 65.7 36.9 250 150-411 228-481 (564)
84 PF12854 PPR_1: PPR repeat 98.6 8.4E-08 1.8E-12 61.1 3.9 32 326-357 2-33 (34)
85 KOG3785 Uncharacterized conser 98.6 0.0011 2.4E-08 64.7 34.4 196 32-238 29-231 (557)
86 KOG1174 Anaphase-promoting com 98.5 0.00012 2.6E-09 72.6 26.5 281 106-396 210-501 (564)
87 KOG0548 Molecular co-chaperone 98.5 0.00028 6.1E-09 72.7 29.8 368 31-413 8-468 (539)
88 PF12854 PPR_1: PPR repeat 98.5 2.1E-07 4.5E-12 59.3 4.1 32 291-322 2-33 (34)
89 KOG0624 dsRNA-activated protei 98.5 0.00026 5.7E-09 68.6 26.4 327 23-396 36-371 (504)
90 PRK04841 transcriptional regul 98.4 0.0015 3.1E-08 77.6 38.4 324 72-395 385-760 (903)
91 KOG3785 Uncharacterized conser 98.4 0.00023 5E-09 69.2 24.7 368 27-413 57-506 (557)
92 TIGR03302 OM_YfiO outer membra 98.4 7.6E-05 1.6E-09 72.8 22.1 187 151-360 30-232 (235)
93 PLN02789 farnesyltranstransfer 98.4 0.00049 1.1E-08 69.6 27.6 215 155-378 38-267 (320)
94 KOG1070 rRNA processing protei 98.3 0.00041 9E-09 78.7 27.2 223 153-382 1457-1687(1710)
95 KOG1125 TPR repeat-containing 98.3 5E-05 1.1E-09 78.7 18.8 223 162-393 293-525 (579)
96 KOG4340 Uncharacterized conser 98.3 0.0014 2.9E-08 62.6 25.9 283 29-321 14-335 (459)
97 PRK04841 transcriptional regul 98.3 0.0043 9.4E-08 73.5 37.1 291 102-394 384-719 (903)
98 KOG2376 Signal recognition par 98.2 0.0054 1.2E-07 64.2 30.6 145 241-389 356-514 (652)
99 KOG4162 Predicted calmodulin-b 98.2 0.016 3.6E-07 62.6 38.3 333 58-396 320-750 (799)
100 KOG1128 Uncharacterized conser 98.2 0.00013 2.9E-09 77.6 19.4 234 156-412 400-634 (777)
101 PLN02789 farnesyltranstransfer 98.2 0.0019 4E-08 65.4 26.6 207 201-413 47-267 (320)
102 PRK10370 formate-dependent nit 98.1 0.00045 9.7E-09 65.0 20.4 115 242-359 55-172 (198)
103 KOG3617 WD40 and TPR repeat-co 98.1 0.00051 1.1E-08 73.8 22.4 239 126-393 725-994 (1416)
104 PRK10370 formate-dependent nit 98.1 0.00066 1.4E-08 63.9 21.3 156 161-334 23-181 (198)
105 KOG1070 rRNA processing protei 98.1 0.00056 1.2E-08 77.7 23.4 210 188-401 1454-1669(1710)
106 KOG1125 TPR repeat-containing 98.1 0.0005 1.1E-08 71.5 21.3 219 21-252 282-524 (579)
107 KOG4162 Predicted calmodulin-b 98.1 0.0013 2.9E-08 70.6 24.7 81 39-121 458-542 (799)
108 TIGR03302 OM_YfiO outer membra 98.1 0.00058 1.2E-08 66.6 20.8 187 189-395 31-232 (235)
109 KOG3617 WD40 and TPR repeat-co 98.1 0.002 4.4E-08 69.4 25.3 248 91-383 725-1010(1416)
110 KOG1128 Uncharacterized conser 98.1 0.00051 1.1E-08 73.3 20.9 220 58-289 395-615 (777)
111 KOG3081 Vesicle coat complex C 98.1 0.0027 5.8E-08 60.0 23.1 119 271-394 147-270 (299)
112 KOG3616 Selective LIM binding 98.1 0.0033 7.1E-08 66.9 26.1 109 233-354 739-847 (1636)
113 TIGR00756 PPR pentatricopeptid 98.1 6.5E-06 1.4E-10 53.1 4.3 33 333-365 2-34 (35)
114 PRK14720 transcript cleavage f 98.0 0.0014 3E-08 73.9 24.9 130 152-289 29-177 (906)
115 KOG3616 Selective LIM binding 98.0 0.0014 3E-08 69.6 23.1 137 161-321 739-875 (1636)
116 COG4783 Putative Zn-dependent 98.0 0.007 1.5E-07 62.1 26.9 157 235-412 315-473 (484)
117 KOG0548 Molecular co-chaperone 98.0 0.018 4E-07 59.7 29.7 362 70-453 11-472 (539)
118 KOG1914 mRNA cleavage and poly 98.0 0.035 7.5E-07 57.8 35.0 167 242-411 347-520 (656)
119 COG4783 Putative Zn-dependent 98.0 0.013 2.7E-07 60.4 27.5 191 151-369 271-462 (484)
120 PRK15359 type III secretion sy 98.0 0.00049 1.1E-08 61.1 15.8 90 268-359 31-120 (144)
121 COG5010 TadD Flp pilus assembl 98.0 0.0012 2.5E-08 62.4 18.7 125 155-284 101-225 (257)
122 COG5010 TadD Flp pilus assembl 97.9 0.0023 5E-08 60.4 20.4 126 227-355 101-226 (257)
123 PRK14720 transcript cleavage f 97.9 0.0038 8.3E-08 70.6 25.8 233 90-342 29-268 (906)
124 PRK15359 type III secretion sy 97.9 0.00072 1.6E-08 60.1 16.2 86 201-288 34-119 (144)
125 KOG3081 Vesicle coat complex C 97.9 0.0079 1.7E-07 56.9 23.1 87 201-291 147-237 (299)
126 PRK15179 Vi polysaccharide bio 97.9 0.002 4.3E-08 72.0 22.9 182 149-343 81-267 (694)
127 PF13812 PPR_3: Pentatricopept 97.9 1.5E-05 3.2E-10 51.0 3.8 32 333-364 3-34 (34)
128 TIGR00756 PPR pentatricopeptid 97.9 2.4E-05 5.2E-10 50.3 4.4 34 94-127 2-35 (35)
129 TIGR02552 LcrH_SycD type III s 97.9 0.00063 1.4E-08 59.8 15.0 24 299-322 54-77 (135)
130 PF13812 PPR_3: Pentatricopept 97.9 2.3E-05 4.9E-10 50.1 4.1 33 93-125 2-34 (34)
131 PRK15179 Vi polysaccharide bio 97.8 0.011 2.5E-07 66.0 27.2 131 261-394 86-216 (694)
132 TIGR02552 LcrH_SycD type III s 97.8 0.00097 2.1E-08 58.5 15.2 92 196-289 22-113 (135)
133 PF10037 MRP-S27: Mitochondria 97.7 0.00036 7.9E-09 72.3 12.8 119 260-378 65-185 (429)
134 KOG3060 Uncharacterized conser 97.7 0.029 6.4E-07 52.8 23.5 155 168-325 26-183 (289)
135 KOG4340 Uncharacterized conser 97.7 0.023 5E-07 54.5 22.9 299 72-391 21-335 (459)
136 KOG2053 Mitochondrial inherita 97.7 0.15 3.2E-06 56.5 41.1 218 35-257 19-257 (932)
137 KOG0985 Vesicle coat protein c 97.7 0.094 2E-06 58.5 29.7 218 65-309 1108-1326(1666)
138 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.0024 5.3E-08 66.0 17.2 123 230-358 173-295 (395)
139 PF01535 PPR: PPR repeat; Int 97.6 5.1E-05 1.1E-09 47.2 3.0 29 333-361 2-30 (31)
140 PF10037 MRP-S27: Mitochondria 97.6 0.00083 1.8E-08 69.7 13.0 123 291-413 61-185 (429)
141 KOG1127 TPR repeat-containing 97.6 0.12 2.6E-06 57.7 29.5 348 39-402 472-884 (1238)
142 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.003 6.6E-08 65.3 16.6 126 193-324 171-296 (395)
143 PF09976 TPR_21: Tetratricopep 97.6 0.0067 1.4E-07 54.0 16.8 115 204-321 24-143 (145)
144 PF09976 TPR_21: Tetratricopep 97.6 0.0041 8.8E-08 55.4 15.3 130 155-287 13-144 (145)
145 KOG1127 TPR repeat-containing 97.5 0.039 8.5E-07 61.4 24.6 180 170-358 474-657 (1238)
146 KOG2053 Mitochondrial inherita 97.5 0.098 2.1E-06 57.8 27.4 222 166-396 21-256 (932)
147 PF01535 PPR: PPR repeat; Int 97.5 0.0001 2.2E-09 45.8 3.1 29 228-256 2-30 (31)
148 PF08579 RPM2: Mitochondrial r 97.5 0.0017 3.6E-08 53.0 10.2 67 310-376 39-114 (120)
149 PF08579 RPM2: Mitochondrial r 97.4 0.0033 7.2E-08 51.3 11.3 81 333-413 27-116 (120)
150 cd00189 TPR Tetratricopeptide 97.4 0.0033 7.1E-08 50.3 11.9 95 157-255 3-97 (100)
151 PF06239 ECSIT: Evolutionarily 97.4 0.004 8.7E-08 57.4 13.1 89 188-276 44-153 (228)
152 PF06239 ECSIT: Evolutionarily 97.3 0.002 4.4E-08 59.3 10.5 100 295-413 46-150 (228)
153 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0094 2E-07 50.7 14.3 101 156-256 4-106 (119)
154 KOG0624 dsRNA-activated protei 97.3 0.21 4.5E-06 49.2 34.2 220 162-410 114-350 (504)
155 KOG2041 WD40 repeat protein [G 97.2 0.29 6.3E-06 52.6 25.6 103 94-216 798-903 (1189)
156 cd00189 TPR Tetratricopeptide 97.2 0.0073 1.6E-07 48.2 11.9 90 232-323 6-95 (100)
157 KOG3060 Uncharacterized conser 97.2 0.17 3.7E-06 47.9 20.9 161 158-325 56-220 (289)
158 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.02 4.3E-07 48.6 14.4 97 194-290 5-105 (119)
159 PF05843 Suf: Suppressor of fo 97.1 0.0097 2.1E-07 59.4 13.9 128 228-359 3-135 (280)
160 PF05843 Suf: Suppressor of fo 97.1 0.011 2.5E-07 58.9 14.2 144 262-410 2-149 (280)
161 PLN03088 SGT1, suppressor of 97.0 0.016 3.4E-07 60.2 15.0 85 308-394 14-98 (356)
162 KOG0553 TPR repeat-containing 97.0 0.006 1.3E-07 58.9 10.7 101 32-136 88-191 (304)
163 PRK15363 pathogenicity island 97.0 0.046 1E-06 48.2 15.3 98 153-255 34-132 (157)
164 KOG2041 WD40 repeat protein [G 97.0 0.71 1.5E-05 49.8 28.2 307 61-407 692-1063(1189)
165 PRK10866 outer membrane biogen 97.0 0.18 3.9E-06 49.0 21.0 177 197-393 38-239 (243)
166 PF12895 Apc3: Anaphase-promot 97.0 0.0014 3.1E-08 52.0 5.1 80 309-391 2-83 (84)
167 PRK02603 photosystem I assembl 97.0 0.04 8.7E-07 50.6 15.5 61 194-254 38-100 (172)
168 PRK10866 outer membrane biogen 96.9 0.26 5.6E-06 48.0 21.5 183 153-358 31-239 (243)
169 PLN03088 SGT1, suppressor of 96.9 0.02 4.4E-07 59.3 14.2 90 162-255 10-99 (356)
170 PF14938 SNAP: Soluble NSF att 96.9 0.17 3.8E-06 50.6 20.3 212 75-323 29-264 (282)
171 PF14938 SNAP: Soluble NSF att 96.9 0.052 1.1E-06 54.4 16.5 147 229-390 97-261 (282)
172 PRK10153 DNA-binding transcrip 96.8 0.066 1.4E-06 58.1 18.1 63 330-394 419-481 (517)
173 PF12895 Apc3: Anaphase-promot 96.8 0.0029 6.3E-08 50.2 5.8 12 306-317 68-79 (84)
174 CHL00033 ycf3 photosystem I as 96.8 0.037 8E-07 50.6 13.9 80 227-307 36-117 (168)
175 PRK02603 photosystem I assembl 96.8 0.052 1.1E-06 49.8 15.0 95 153-249 34-129 (172)
176 CHL00033 ycf3 photosystem I as 96.7 0.035 7.5E-07 50.8 13.2 94 154-249 35-136 (168)
177 PF14559 TPR_19: Tetratricopep 96.7 0.0069 1.5E-07 45.7 6.7 63 35-99 1-65 (68)
178 PF04840 Vps16_C: Vps16, C-ter 96.6 0.92 2E-05 46.0 23.8 110 229-358 180-289 (319)
179 PRK15363 pathogenicity island 96.6 0.065 1.4E-06 47.3 12.9 89 233-323 42-130 (157)
180 PF12688 TPR_5: Tetratrico pep 96.6 0.11 2.3E-06 44.2 13.9 89 234-322 9-101 (120)
181 KOG1914 mRNA cleavage and poly 96.6 1.3 2.8E-05 46.6 33.6 377 26-410 17-481 (656)
182 PRK10153 DNA-binding transcrip 96.6 0.14 2.9E-06 55.7 18.0 145 221-370 332-490 (517)
183 KOG2796 Uncharacterized conser 96.5 0.63 1.4E-05 44.3 19.2 141 227-370 178-323 (366)
184 PF14559 TPR_19: Tetratricopep 96.4 0.015 3.2E-07 43.8 7.1 52 203-255 3-54 (68)
185 smart00463 SMR Small MutS-rela 96.2 0.015 3.2E-07 45.6 6.3 77 534-623 2-78 (80)
186 KOG0553 TPR repeat-containing 96.2 0.057 1.2E-06 52.3 11.3 97 273-373 93-189 (304)
187 PF04840 Vps16_C: Vps16, C-ter 96.1 1.8 3.9E-05 43.9 25.9 84 298-391 179-262 (319)
188 PF13432 TPR_16: Tetratricopep 96.1 0.023 4.9E-07 42.4 6.7 55 304-359 5-59 (65)
189 KOG2796 Uncharacterized conser 96.1 0.34 7.3E-06 46.0 15.4 142 194-338 180-326 (366)
190 PF13525 YfiO: Outer membrane 96.1 0.68 1.5E-05 43.7 18.0 82 298-385 112-197 (203)
191 PF03704 BTAD: Bacterial trans 96.1 0.16 3.5E-06 45.0 13.1 59 228-287 64-122 (146)
192 PF13414 TPR_11: TPR repeat; P 96.0 0.034 7.4E-07 42.0 7.4 59 193-252 5-64 (69)
193 PF13432 TPR_16: Tetratricopep 96.0 0.031 6.8E-07 41.6 7.1 54 200-254 6-59 (65)
194 PF13525 YfiO: Outer membrane 96.0 1.5 3.2E-05 41.4 19.9 183 158-351 9-198 (203)
195 PF12688 TPR_5: Tetratrico pep 95.9 0.46 1E-05 40.3 14.2 87 303-391 8-100 (120)
196 KOG0550 Molecular chaperone (D 95.7 2.8 6.1E-05 42.8 23.9 270 33-325 57-350 (486)
197 PF12921 ATP13: Mitochondrial 95.7 0.21 4.5E-06 42.8 11.3 27 153-179 1-27 (126)
198 COG4235 Cytochrome c biogenesi 95.6 0.58 1.3E-05 45.7 15.4 100 293-395 153-256 (287)
199 KOG1538 Uncharacterized conser 95.6 1.1 2.5E-05 47.9 18.1 189 95-325 601-802 (1081)
200 PRK10803 tol-pal system protei 95.6 0.25 5.3E-06 48.6 13.0 99 154-256 143-247 (263)
201 PF03704 BTAD: Bacterial trans 95.5 0.079 1.7E-06 47.1 8.5 70 298-368 64-138 (146)
202 PF13414 TPR_11: TPR repeat; P 95.5 0.072 1.6E-06 40.1 7.1 58 298-356 5-63 (69)
203 COG4235 Cytochrome c biogenesi 95.4 0.87 1.9E-05 44.5 15.7 101 223-325 153-256 (287)
204 COG4700 Uncharacterized protei 95.4 2 4.4E-05 38.8 18.7 127 188-318 86-215 (251)
205 KOG3941 Intermediate in Toll s 95.3 0.13 2.9E-06 49.2 9.5 105 188-311 64-173 (406)
206 PF13281 DUF4071: Domain of un 95.3 3.9 8.5E-05 42.0 20.8 76 196-271 146-227 (374)
207 PF12921 ATP13: Mitochondrial 95.3 0.27 5.9E-06 42.1 10.8 97 295-411 1-98 (126)
208 PRK10803 tol-pal system protei 95.2 0.38 8.2E-06 47.3 13.0 98 296-395 143-246 (263)
209 PF04053 Coatomer_WDAD: Coatom 95.2 2.2 4.7E-05 45.4 19.5 131 92-251 295-427 (443)
210 KOG0550 Molecular chaperone (D 95.0 4.5 9.8E-05 41.3 19.4 177 189-396 166-351 (486)
211 PF13371 TPR_9: Tetratricopept 94.9 0.16 3.4E-06 38.8 7.6 54 305-359 4-57 (73)
212 PF13371 TPR_9: Tetratricopept 94.7 0.23 5E-06 37.8 8.1 52 202-254 6-57 (73)
213 KOG3941 Intermediate in Toll s 94.6 0.23 5E-06 47.6 9.1 33 349-381 141-173 (406)
214 KOG1538 Uncharacterized conser 94.6 1.3 2.8E-05 47.5 15.3 90 296-396 747-847 (1081)
215 KOG1130 Predicted G-alpha GTPa 94.6 0.87 1.9E-05 46.1 13.5 130 228-357 197-341 (639)
216 KOG1130 Predicted G-alpha GTPa 94.5 1.2 2.5E-05 45.3 14.1 281 33-324 25-343 (639)
217 PF13170 DUF4003: Protein of u 94.2 4.5 9.8E-05 40.5 17.8 130 242-373 78-224 (297)
218 PF13424 TPR_12: Tetratricopep 94.1 0.14 3E-06 39.7 5.8 62 156-217 7-72 (78)
219 smart00299 CLH Clathrin heavy 94.1 2.5 5.3E-05 37.1 14.4 84 196-287 12-95 (140)
220 PLN03098 LPA1 LOW PSII ACCUMUL 94.0 0.76 1.7E-05 47.8 12.2 65 152-220 73-141 (453)
221 smart00299 CLH Clathrin heavy 94.0 3.3 7.2E-05 36.2 15.1 85 230-322 11-95 (140)
222 PF13424 TPR_12: Tetratricopep 94.0 0.18 3.9E-06 39.0 6.1 61 297-357 6-72 (78)
223 PLN03098 LPA1 LOW PSII ACCUMUL 93.9 1.2 2.6E-05 46.4 13.4 63 295-359 74-140 (453)
224 PF13170 DUF4003: Protein of u 93.9 7.8 0.00017 38.8 19.5 136 108-268 78-224 (297)
225 PF10300 DUF3808: Protein of u 93.5 5.4 0.00012 43.1 18.2 16 36-51 7-22 (468)
226 KOG2610 Uncharacterized conser 93.3 5.3 0.00011 39.7 15.7 151 238-391 115-272 (491)
227 PRK15331 chaperone protein Sic 93.2 0.79 1.7E-05 40.8 9.3 21 230-250 75-95 (165)
228 KOG0543 FKBP-type peptidyl-pro 93.1 2.5 5.5E-05 43.1 13.9 139 99-254 215-354 (397)
229 COG0457 NrfG FOG: TPR repeat [ 93.0 7.7 0.00017 36.2 27.4 221 168-395 37-265 (291)
230 PRK15331 chaperone protein Sic 92.9 5.5 0.00012 35.6 14.1 93 159-255 42-134 (165)
231 COG4700 Uncharacterized protei 92.7 7.7 0.00017 35.3 18.8 99 259-359 87-188 (251)
232 COG3898 Uncharacterized membra 92.5 14 0.0003 37.7 26.4 144 170-325 245-392 (531)
233 COG5107 RNA14 Pre-mRNA 3'-end 92.2 6 0.00013 40.9 15.0 151 226-381 397-550 (660)
234 PF09205 DUF1955: Domain of un 92.0 7.1 0.00015 33.3 14.1 84 308-397 68-151 (161)
235 PF07079 DUF1347: Protein of u 91.9 18 0.00038 37.8 35.7 71 70-140 88-180 (549)
236 KOG1941 Acetylcholine receptor 91.8 7.6 0.00016 39.0 14.8 167 156-323 85-273 (518)
237 PF13281 DUF4071: Domain of un 91.7 18 0.00039 37.3 20.6 164 231-396 146-335 (374)
238 PF04053 Coatomer_WDAD: Coatom 91.6 4.3 9.3E-05 43.3 14.2 156 200-390 270-426 (443)
239 KOG0543 FKBP-type peptidyl-pro 91.5 3.6 7.9E-05 42.0 12.6 90 199-289 216-319 (397)
240 COG0457 NrfG FOG: TPR repeat [ 91.3 12 0.00027 34.8 25.4 203 154-360 59-265 (291)
241 KOG4555 TPR repeat-containing 91.1 7.6 0.00017 33.0 12.0 89 237-326 54-145 (175)
242 PF09205 DUF1955: Domain of un 90.8 4.6 9.9E-05 34.4 10.5 139 165-327 13-151 (161)
243 COG3629 DnrI DNA-binding trans 90.7 2.8 6.1E-05 41.2 10.8 75 296-371 153-232 (280)
244 KOG1585 Protein required for f 90.7 16 0.00034 34.9 14.9 75 33-117 39-116 (308)
245 PF10300 DUF3808: Protein of u 90.5 29 0.00062 37.5 25.3 128 156-288 231-374 (468)
246 KOG4555 TPR repeat-containing 90.4 8.5 0.00018 32.7 11.7 91 305-396 52-145 (175)
247 COG1729 Uncharacterized protei 90.3 4.4 9.4E-05 39.3 11.5 98 156-256 144-245 (262)
248 KOG2610 Uncharacterized conser 90.3 14 0.00029 36.9 14.8 103 145-251 128-234 (491)
249 PF07035 Mic1: Colon cancer-as 89.9 15 0.00032 33.2 15.3 98 213-322 16-115 (167)
250 COG3629 DnrI DNA-binding trans 89.6 4 8.7E-05 40.1 10.9 70 195-265 157-231 (280)
251 KOG2280 Vacuolar assembly/sort 89.6 38 0.00083 37.6 24.1 89 294-392 682-770 (829)
252 KOG2114 Vacuolar assembly/sort 89.6 41 0.00089 38.0 23.5 173 28-217 337-516 (933)
253 COG3118 Thioredoxin domain-con 89.5 23 0.0005 34.9 15.9 143 200-346 143-287 (304)
254 PRK11906 transcriptional regul 89.4 25 0.00053 37.1 16.8 162 155-320 252-431 (458)
255 KOG1585 Protein required for f 89.1 16 0.00036 34.8 13.7 55 264-319 193-250 (308)
256 COG5107 RNA14 Pre-mRNA 3'-end 89.0 32 0.00068 35.9 30.9 146 261-412 397-546 (660)
257 PF13428 TPR_14: Tetratricopep 88.8 1.7 3.8E-05 29.1 5.7 21 199-219 9-29 (44)
258 KOG4570 Uncharacterized conser 88.8 4.5 9.8E-05 39.7 10.3 101 291-395 59-164 (418)
259 KOG1920 IkappaB kinase complex 88.7 57 0.0012 38.4 24.2 152 205-391 894-1051(1265)
260 PRK11906 transcriptional regul 88.6 36 0.00077 36.0 18.0 78 279-358 322-399 (458)
261 KOG2114 Vacuolar assembly/sort 88.5 15 0.00033 41.2 15.1 151 152-322 362-516 (933)
262 KOG1550 Extracellular protein 88.0 40 0.00088 37.3 18.9 183 207-397 228-428 (552)
263 PF13428 TPR_14: Tetratricopep 88.0 2 4.2E-05 28.9 5.5 27 299-325 4-30 (44)
264 COG3898 Uncharacterized membra 88.0 34 0.00074 35.0 30.3 287 73-400 96-397 (531)
265 PF01713 Smr: Smr domain; Int 88.0 2.4 5.2E-05 33.2 6.9 61 536-613 1-61 (83)
266 PF13512 TPR_18: Tetratricopep 87.9 15 0.00032 32.1 12.0 75 199-273 18-94 (142)
267 PF04184 ST7: ST7 protein; In 87.9 37 0.0008 36.1 16.8 60 300-359 263-323 (539)
268 PF08631 SPO22: Meiosis protei 87.6 32 0.00069 34.3 27.5 133 103-255 4-150 (278)
269 PF13929 mRNA_stabil: mRNA sta 87.5 31 0.00067 34.0 18.0 142 229-373 134-285 (292)
270 PF08631 SPO22: Meiosis protei 87.4 32 0.0007 34.2 26.9 164 165-331 4-192 (278)
271 COG3118 Thioredoxin domain-con 87.3 32 0.00069 33.9 15.2 145 163-313 143-289 (304)
272 PF10602 RPN7: 26S proteasome 87.2 8.1 0.00017 35.5 10.8 62 227-288 37-100 (177)
273 COG4105 ComL DNA uptake lipopr 87.2 30 0.00064 33.4 21.6 59 162-220 42-100 (254)
274 COG1729 Uncharacterized protei 87.1 9.2 0.0002 37.1 11.3 97 298-395 144-244 (262)
275 KOG2034 Vacuolar sorting prote 86.4 66 0.0014 36.7 29.8 310 26-381 359-676 (911)
276 COG4105 ComL DNA uptake lipopr 86.2 33 0.00072 33.1 20.5 175 200-394 43-232 (254)
277 PF09613 HrpB1_HrpK: Bacterial 85.9 14 0.0003 33.0 11.0 53 34-88 19-71 (160)
278 KOG1550 Extracellular protein 85.0 55 0.0012 36.3 17.9 185 170-362 228-428 (552)
279 PF14432 DYW_deaminase: DYW fa 84.7 0.79 1.7E-05 38.7 2.6 44 526-579 2-45 (116)
280 PF10602 RPN7: 26S proteasome 84.6 11 0.00025 34.5 10.4 63 155-219 37-101 (177)
281 PF04184 ST7: ST7 protein; In 84.5 61 0.0013 34.5 20.0 162 161-338 175-338 (539)
282 PF13176 TPR_7: Tetratricopept 84.4 2 4.3E-05 27.4 3.9 23 157-179 2-24 (36)
283 KOG4570 Uncharacterized conser 84.4 13 0.00029 36.6 10.9 105 255-361 58-165 (418)
284 PF09613 HrpB1_HrpK: Bacterial 83.8 31 0.00068 30.8 13.8 18 237-254 55-72 (160)
285 PF13176 TPR_7: Tetratricopept 83.8 2.4 5.2E-05 27.0 4.1 26 94-119 1-26 (36)
286 KOG2066 Vacuolar assembly/sort 83.3 85 0.0018 35.3 26.4 77 31-109 362-440 (846)
287 PF07035 Mic1: Colon cancer-as 82.7 36 0.00079 30.7 14.5 133 246-392 14-146 (167)
288 TIGR02561 HrpB1_HrpK type III 82.6 13 0.00027 32.7 9.0 90 37-128 22-113 (153)
289 PF07575 Nucleopor_Nup85: Nup8 82.2 46 0.001 37.0 16.0 146 247-410 391-539 (566)
290 PF13512 TPR_18: Tetratricopep 82.2 34 0.00073 29.9 12.4 78 161-238 17-94 (142)
291 KOG1920 IkappaB kinase complex 80.9 1.3E+02 0.0028 35.7 20.7 138 156-323 910-1053(1265)
292 KOG2280 Vacuolar assembly/sort 80.6 1E+02 0.0022 34.5 29.6 303 97-432 442-771 (829)
293 PF13762 MNE1: Mitochondrial s 79.6 34 0.00074 30.0 10.8 80 334-413 42-127 (145)
294 COG3947 Response regulator con 79.1 69 0.0015 31.6 14.9 99 150-252 223-339 (361)
295 PF11207 DUF2989: Protein of u 79.1 20 0.00044 33.2 9.7 22 294-315 176-197 (203)
296 PF13431 TPR_17: Tetratricopep 79.1 3.4 7.4E-05 26.0 3.4 24 223-246 10-33 (34)
297 PF13929 mRNA_stabil: mRNA sta 78.8 55 0.0012 32.3 13.0 137 167-304 141-286 (292)
298 KOG0276 Vesicle coat complex C 78.6 18 0.0004 39.0 10.3 130 130-286 617-746 (794)
299 COG1747 Uncharacterized N-term 78.3 1E+02 0.0022 33.0 24.7 179 223-409 63-247 (711)
300 PF00515 TPR_1: Tetratricopept 77.4 5.1 0.00011 24.8 4.0 27 156-182 3-29 (34)
301 PF00637 Clathrin: Region in C 77.4 0.92 2E-05 40.0 0.6 51 234-284 15-65 (143)
302 PF00515 TPR_1: Tetratricopept 77.4 5.2 0.00011 24.7 4.0 25 334-358 4-28 (34)
303 COG4649 Uncharacterized protei 77.0 57 0.0012 29.5 14.3 128 272-399 69-200 (221)
304 cd00923 Cyt_c_Oxidase_Va Cytoc 75.5 28 0.00062 28.0 8.2 64 346-411 22-86 (103)
305 COG3947 Response regulator con 73.6 98 0.0021 30.6 17.3 69 335-404 283-356 (361)
306 KOG1941 Acetylcholine receptor 73.5 1.1E+02 0.0024 31.2 18.7 228 165-393 17-273 (518)
307 PF00637 Clathrin: Region in C 73.3 1.1 2.5E-05 39.4 0.1 83 302-391 13-95 (143)
308 PF13374 TPR_10: Tetratricopep 73.3 7.8 0.00017 25.1 4.3 26 333-358 4-29 (42)
309 COG4649 Uncharacterized protei 73.3 72 0.0016 28.9 14.4 50 274-323 145-194 (221)
310 PF04097 Nic96: Nup93/Nic96; 73.1 1.7E+02 0.0036 33.0 17.1 87 234-325 266-356 (613)
311 PF13431 TPR_17: Tetratricopep 72.5 6.1 0.00013 24.8 3.3 21 330-350 12-32 (34)
312 PF13374 TPR_10: Tetratricopep 71.7 9.9 0.00021 24.6 4.5 29 296-324 2-30 (42)
313 TIGR02508 type_III_yscG type I 71.0 55 0.0012 26.6 9.6 87 39-130 19-105 (115)
314 TIGR02508 type_III_yscG type I 70.9 48 0.001 26.9 8.5 86 277-370 21-106 (115)
315 PF07719 TPR_2: Tetratricopept 70.7 9.6 0.00021 23.3 4.0 21 337-357 7-27 (34)
316 PF11207 DUF2989: Protein of u 70.4 40 0.00087 31.4 9.3 77 203-281 119-198 (203)
317 COG4785 NlpI Lipoprotein NlpI, 69.6 1E+02 0.0022 29.1 18.1 180 205-396 79-267 (297)
318 PF02284 COX5A: Cytochrome c o 68.6 25 0.00055 28.5 6.6 17 264-280 48-64 (108)
319 PF07719 TPR_2: Tetratricopept 68.5 11 0.00024 23.0 4.0 27 156-182 3-29 (34)
320 PRK09687 putative lyase; Provi 67.3 1.4E+02 0.003 29.8 30.5 233 152-411 35-277 (280)
321 PF13762 MNE1: Mitochondrial s 66.6 91 0.002 27.4 11.7 82 298-379 41-128 (145)
322 KOG4648 Uncharacterized conser 66.4 33 0.00071 34.4 8.3 89 161-254 104-193 (536)
323 KOG4648 Uncharacterized conser 64.7 22 0.00047 35.6 6.8 49 33-83 105-153 (536)
324 COG4455 ImpE Protein of avirul 63.9 40 0.00086 31.7 7.8 52 198-250 8-59 (273)
325 KOG4234 TPR repeat-containing 61.5 1E+02 0.0022 28.7 9.8 88 164-255 105-197 (271)
326 PF06552 TOM20_plant: Plant sp 61.3 1.3E+02 0.0029 27.5 11.2 77 207-292 51-138 (186)
327 PRK15180 Vi polysaccharide bio 60.9 49 0.0011 34.8 8.7 125 161-291 296-421 (831)
328 COG4455 ImpE Protein of avirul 60.3 58 0.0013 30.7 8.2 76 264-340 4-81 (273)
329 PF08311 Mad3_BUB1_I: Mad3/BUB 59.6 50 0.0011 28.2 7.5 42 43-84 81-122 (126)
330 COG2976 Uncharacterized protei 58.8 1.4E+02 0.003 27.7 10.3 87 36-122 100-189 (207)
331 PF04097 Nic96: Nup93/Nic96; 56.8 3.3E+02 0.0072 30.7 16.6 43 159-204 116-158 (613)
332 PF02284 COX5A: Cytochrome c o 56.3 1.1E+02 0.0024 25.0 11.3 62 349-411 28-89 (108)
333 PF10345 Cohesin_load: Cohesin 55.6 3.5E+02 0.0075 30.5 19.2 126 231-357 105-251 (608)
334 KOG1464 COP9 signalosome, subu 55.6 2.1E+02 0.0045 28.0 17.9 201 150-352 22-252 (440)
335 PRK09687 putative lyase; Provi 55.2 2.3E+02 0.0049 28.2 28.6 197 158-377 72-278 (280)
336 PF13181 TPR_8: Tetratricopept 55.1 34 0.00073 20.8 4.4 27 228-254 3-29 (34)
337 PF13174 TPR_6: Tetratricopept 55.1 16 0.00034 22.1 2.8 24 160-183 6-29 (33)
338 KOG4234 TPR repeat-containing 54.3 1.6E+02 0.0036 27.4 9.9 20 340-359 177-196 (271)
339 PF13181 TPR_8: Tetratricopept 54.3 29 0.00062 21.2 4.0 27 156-182 3-29 (34)
340 KOG0276 Vesicle coat complex C 53.4 1.4E+02 0.003 32.7 10.7 131 227-390 615-745 (794)
341 PF09477 Type_III_YscG: Bacter 53.4 1.3E+02 0.0028 24.9 8.5 81 38-122 19-99 (116)
342 TIGR03504 FimV_Cterm FimV C-te 53.0 30 0.00066 23.3 4.0 19 200-218 8-26 (44)
343 TIGR02561 HrpB1_HrpK type III 52.5 1.7E+02 0.0036 25.9 12.8 19 237-255 55-73 (153)
344 KOG1586 Protein required for f 52.2 2.2E+02 0.0048 27.3 13.6 30 305-334 163-192 (288)
345 KOG2063 Vacuolar assembly/sort 52.1 4.5E+02 0.0097 30.8 15.3 58 28-87 310-372 (877)
346 COG5159 RPN6 26S proteasome re 52.0 2.5E+02 0.0054 27.8 11.6 128 232-359 9-153 (421)
347 TIGR01503 MthylAspMut_E methyl 51.8 2E+02 0.0044 30.5 11.5 39 606-645 401-442 (480)
348 PF07163 Pex26: Pex26 protein; 51.8 1.5E+02 0.0033 29.1 9.9 87 233-319 90-181 (309)
349 COG2976 Uncharacterized protei 51.5 2.1E+02 0.0045 26.7 13.3 91 199-291 97-189 (207)
350 PF07721 TPR_4: Tetratricopept 51.0 22 0.00047 20.6 2.7 15 234-248 9-23 (26)
351 TIGR03504 FimV_Cterm FimV C-te 50.0 43 0.00093 22.6 4.3 19 270-288 8-26 (44)
352 PF10345 Cohesin_load: Cohesin 49.8 4.2E+02 0.0092 29.8 20.2 195 189-393 28-252 (608)
353 PF11848 DUF3368: Domain of un 49.4 59 0.0013 22.3 5.1 32 377-408 13-44 (48)
354 PF11848 DUF3368: Domain of un 49.3 60 0.0013 22.3 5.1 34 341-374 12-45 (48)
355 PF08424 NRDE-2: NRDE-2, neces 48.9 3.1E+02 0.0067 27.9 17.0 65 207-273 47-111 (321)
356 cd08819 CARD_MDA5_2 Caspase ac 48.6 1.1E+02 0.0024 24.2 6.9 14 275-288 50-63 (88)
357 PF07163 Pex26: Pex26 protein; 48.3 1.7E+02 0.0037 28.8 9.6 89 266-354 88-181 (309)
358 PF09477 Type_III_YscG: Bacter 47.5 1.6E+02 0.0035 24.3 9.3 87 275-369 20-106 (116)
359 KOG1464 COP9 signalosome, subu 45.9 3E+02 0.0065 26.9 19.6 203 186-389 21-254 (440)
360 KOG1586 Protein required for f 45.7 2.8E+02 0.0062 26.6 19.7 93 341-433 164-264 (288)
361 KOG2066 Vacuolar assembly/sort 45.1 5.2E+02 0.011 29.5 27.8 160 69-254 364-533 (846)
362 PF06552 TOM20_plant: Plant sp 44.3 2.6E+02 0.0055 25.7 10.2 12 399-410 111-122 (186)
363 KOG4077 Cytochrome c oxidase, 44.2 1.4E+02 0.0031 25.4 7.3 61 349-410 67-127 (149)
364 PHA02875 ankyrin repeat protei 42.7 1.9E+02 0.0042 30.5 10.5 181 196-401 37-230 (413)
365 cd08819 CARD_MDA5_2 Caspase ac 42.7 1.2E+02 0.0025 24.0 6.3 65 44-111 21-85 (88)
366 PF02847 MA3: MA3 domain; Int 39.2 2.2E+02 0.0047 23.4 8.3 66 335-402 6-73 (113)
367 PF14689 SPOB_a: Sensor_kinase 39.1 62 0.0014 23.6 4.2 23 336-358 28-50 (62)
368 PF11663 Toxin_YhaV: Toxin wit 39.1 35 0.00075 29.3 3.1 30 344-375 108-137 (140)
369 smart00777 Mad3_BUB1_I Mad3/BU 38.3 1.2E+02 0.0025 26.0 6.3 24 93-116 100-123 (125)
370 PF11846 DUF3366: Domain of un 38.1 1.5E+02 0.0031 27.5 7.7 33 362-394 140-172 (193)
371 PF10366 Vps39_1: Vacuolar sor 37.8 1.7E+02 0.0038 24.2 7.2 27 228-254 41-67 (108)
372 KOG2659 LisH motif-containing 37.6 2.9E+02 0.0062 26.4 9.2 97 293-391 23-128 (228)
373 KOG1258 mRNA processing protei 37.6 5.9E+02 0.013 28.0 33.0 93 26-120 42-142 (577)
374 PF13934 ELYS: Nuclear pore co 37.4 2.7E+02 0.0059 26.6 9.5 94 70-168 87-186 (226)
375 KOG4077 Cytochrome c oxidase, 36.8 2.4E+02 0.0052 24.1 7.6 44 245-288 68-111 (149)
376 PF10366 Vps39_1: Vacuolar sor 36.7 1.5E+02 0.0033 24.5 6.6 27 333-359 41-67 (108)
377 smart00028 TPR Tetratricopepti 36.6 72 0.0016 17.9 3.8 27 156-182 3-29 (34)
378 PF10579 Rapsyn_N: Rapsyn N-te 36.5 81 0.0018 24.4 4.5 47 166-213 18-65 (80)
379 KOG2471 TPR repeat-containing 36.5 5.7E+02 0.012 27.5 13.4 106 306-413 250-381 (696)
380 PRK10564 maltose regulon perip 36.4 60 0.0013 32.2 4.8 38 334-371 260-297 (303)
381 PF08424 NRDE-2: NRDE-2, neces 36.3 4.8E+02 0.01 26.5 17.7 118 278-397 48-185 (321)
382 PF10579 Rapsyn_N: Rapsyn N-te 35.9 1.1E+02 0.0024 23.6 5.1 17 264-280 46-62 (80)
383 COG5108 RPO41 Mitochondrial DN 35.5 2.9E+02 0.0063 30.7 9.9 75 266-343 33-115 (1117)
384 COG0735 Fur Fe2+/Zn2+ uptake r 35.5 1.9E+02 0.0042 25.4 7.5 60 215-275 10-69 (145)
385 PRK10564 maltose regulon perip 34.1 74 0.0016 31.6 5.0 43 90-132 254-297 (303)
386 PF11663 Toxin_YhaV: Toxin wit 33.8 40 0.00086 29.0 2.7 20 205-224 109-128 (140)
387 PF14689 SPOB_a: Sensor_kinase 33.3 91 0.002 22.8 4.3 21 232-252 29-49 (62)
388 PF02259 FAT: FAT domain; Int 32.6 5.4E+02 0.012 26.1 27.5 65 295-359 145-212 (352)
389 KOG2582 COP9 signalosome, subu 32.4 5.8E+02 0.013 26.3 11.0 55 342-396 288-346 (422)
390 PF04910 Tcf25: Transcriptiona 31.9 6E+02 0.013 26.4 17.9 57 303-359 110-167 (360)
391 COG5187 RPN7 26S proteasome re 31.5 5.3E+02 0.012 25.6 13.2 100 331-430 115-224 (412)
392 PF12862 Apc5: Anaphase-promot 31.4 2.5E+02 0.0054 22.4 7.0 53 342-394 9-69 (94)
393 PF11838 ERAP1_C: ERAP1-like C 30.7 5.6E+02 0.012 25.7 22.0 87 277-366 146-237 (324)
394 cd00280 TRFH Telomeric Repeat 30.4 3.4E+02 0.0074 25.0 8.1 22 303-324 118-139 (200)
395 PF02259 FAT: FAT domain; Int 30.3 5.9E+02 0.013 25.8 23.9 27 228-254 148-174 (352)
396 PF04762 IKI3: IKI3 family; I 30.2 8.2E+02 0.018 29.3 13.6 29 262-290 813-843 (928)
397 KOG1258 mRNA processing protei 30.1 7.8E+02 0.017 27.1 19.6 186 189-381 295-490 (577)
398 PRK14700 recombination factor 30.1 5.3E+02 0.011 25.9 10.2 44 232-275 129-175 (300)
399 COG5108 RPO41 Mitochondrial DN 29.5 3.8E+02 0.0081 29.9 9.5 23 159-181 33-55 (1117)
400 PF14853 Fis1_TPR_C: Fis1 C-te 29.1 1.9E+02 0.0041 20.4 5.1 35 373-409 8-42 (53)
401 KOG1114 Tripeptidyl peptidase 29.0 1E+03 0.022 28.1 14.3 33 378-410 1243-1276(1304)
402 KOG2063 Vacuolar assembly/sort 29.0 3.6E+02 0.0078 31.5 10.0 116 228-343 506-638 (877)
403 KOG0991 Replication factor C, 28.5 5.5E+02 0.012 24.8 13.0 126 232-366 136-273 (333)
404 PF11817 Foie-gras_1: Foie gra 28.2 2.7E+02 0.0059 27.0 8.1 56 231-286 183-243 (247)
405 PF11768 DUF3312: Protein of u 28.1 8.3E+02 0.018 26.8 12.0 125 156-291 410-537 (545)
406 PF10759 DUF2587: Protein of u 28.1 31 0.00067 29.8 1.1 40 594-633 72-113 (169)
407 PF14853 Fis1_TPR_C: Fis1 C-te 27.2 2E+02 0.0043 20.3 4.9 34 337-372 7-40 (53)
408 PF11846 DUF3366: Domain of un 27.2 2.4E+02 0.0052 26.0 7.2 32 188-219 141-172 (193)
409 KOG4507 Uncharacterized conser 27.1 3.7E+02 0.0081 29.5 8.9 116 243-360 590-705 (886)
410 COG2909 MalT ATP-dependent tra 26.4 1.1E+03 0.024 27.6 23.5 274 113-404 332-656 (894)
411 cd00280 TRFH Telomeric Repeat 26.1 5.3E+02 0.011 23.8 9.2 43 97-142 116-158 (200)
412 cd08326 CARD_CASP9 Caspase act 26.0 3.2E+02 0.0069 21.4 6.4 63 44-111 18-80 (84)
413 PF11817 Foie-gras_1: Foie gra 26.0 3.2E+02 0.0069 26.5 8.1 56 336-391 183-243 (247)
414 KOG2422 Uncharacterized conser 25.6 9.4E+02 0.02 26.6 18.4 155 166-323 250-446 (665)
415 KOG4507 Uncharacterized conser 25.4 2.4E+02 0.0051 30.9 7.1 152 188-342 568-721 (886)
416 PF10255 Paf67: RNA polymerase 25.3 8.2E+02 0.018 25.8 11.8 176 155-337 123-318 (404)
417 COG0735 Fur Fe2+/Zn2+ uptake r 25.0 3.2E+02 0.0069 24.0 7.1 63 319-382 9-71 (145)
418 cd08332 CARD_CASP2 Caspase act 24.6 3.2E+02 0.0069 21.7 6.3 60 45-109 23-82 (90)
419 COG1747 Uncharacterized N-term 24.1 9.5E+02 0.021 26.1 25.0 180 153-342 65-250 (711)
420 PF09454 Vps23_core: Vps23 cor 23.5 1.3E+02 0.0029 22.2 3.7 29 263-291 10-38 (65)
421 KOG0403 Neoplastic transformat 23.3 3.2E+02 0.007 28.8 7.5 71 196-273 514-586 (645)
422 PF12862 Apc5: Anaphase-promot 23.3 3.8E+02 0.0083 21.2 6.9 21 233-253 48-68 (94)
423 PRK13342 recombination factor 23.3 9E+02 0.02 25.5 17.2 154 169-324 152-333 (413)
424 PRK11639 zinc uptake transcrip 22.7 4.3E+02 0.0094 23.9 7.7 58 218-276 18-75 (169)
425 KOG1166 Mitotic checkpoint ser 22.7 2E+02 0.0042 34.1 6.6 69 19-88 73-141 (974)
426 COG4785 NlpI Lipoprotein NlpI, 22.4 6.9E+02 0.015 23.8 16.2 166 142-323 87-264 (297)
427 PHA02875 ankyrin repeat protei 22.0 9.2E+02 0.02 25.2 14.9 15 163-177 74-88 (413)
428 PRK14958 DNA polymerase III su 22.0 1.1E+03 0.023 25.9 12.3 36 330-366 245-280 (509)
429 PF09868 DUF2095: Uncharacteri 21.4 3.6E+02 0.0077 22.5 5.9 32 197-229 67-98 (128)
430 PF11838 ERAP1_C: ERAP1-like C 21.3 8.3E+02 0.018 24.4 15.2 84 170-256 146-231 (324)
431 KOG2396 HAT (Half-A-TPR) repea 21.2 1.1E+03 0.023 25.6 24.9 229 152-394 313-558 (568)
432 PF12926 MOZART2: Mitotic-spin 21.0 4.2E+02 0.0092 20.9 8.1 43 212-254 29-71 (88)
433 PF11338 DUF3140: Protein of u 20.9 95 0.0021 24.8 2.5 22 622-643 8-29 (92)
434 PF06485 DUF1092: Protein of u 20.7 1.2E+02 0.0026 29.6 3.8 56 555-635 48-103 (270)
435 PF04762 IKI3: IKI3 family; I 20.6 1.5E+03 0.032 27.1 14.8 29 227-255 813-843 (928)
436 COG0790 FOG: TPR repeat, SEL1 20.2 8.3E+02 0.018 24.0 22.1 193 205-407 55-278 (292)
437 smart00386 HAT HAT (Half-A-TPR 20.2 1.9E+02 0.0042 16.7 4.2 14 206-219 2-15 (33)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.1e-109 Score=934.42 Aligned_cols=649 Identities=76% Similarity=1.212 Sum_probs=581.3
Q ss_pred CCCchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHH
Q 005905 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSV 101 (670)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~ 101 (670)
+.+...++..|+.+++.|++++|+++|++|.+.|+.+++..++..++..|.+.|.+++|+++|+.|+.||..+||.+|.+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35688999999999999999999999999999999888888888777777777777777777777766666666666666
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh---------------------------------
Q 005905 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------------------------------- 148 (670)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~--------------------------------- 148 (670)
|++.|+++.|.++|++|.+.|+.||..+|++||.+|+++|+++.+.+
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 66666666666666666666666666666666666666655554322
Q ss_pred ----------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005905 149 ----------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 218 (670)
Q Consensus 149 ----------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 218 (670)
++.||.++||+||.+|++.|++++|.++|++|...+.++.||.++|+++|.+|++.|++++|.++|++|.
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~ 606 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4567777777777777777777777777777765444677888888888888888888888888888888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHH
Q 005905 219 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIIS 298 (670)
Q Consensus 219 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~ 298 (670)
+.+++|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++.|++++|.++|++|.+.|+.||..+
T Consensus 607 e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~t 686 (1060)
T PLN03218 607 EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686 (1060)
T ss_pred HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 88888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005905 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378 (670)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 378 (670)
|++||.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|+++|++|...|+.||..||+.++.+|++
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k 766 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhhHHHHHHhHHHhhhhcCCCccchhhhHHHHHHHHHHHHHcCCCCc
Q 005905 379 KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPT 458 (670)
Q Consensus 379 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~P~ 458 (670)
.|++++|.++|++|.+.|+.||..+|++++++|.+.|++|+.+.++...|+.+.+...+.|+.+|+.+|++|++.|+.||
T Consensus 767 ~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd 846 (1060)
T PLN03218 767 KDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPT 846 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCC
Confidence 99999999999999999999999999999999888899999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHhhccCCCchhHHHHHHHhcCCCccccccccchhhhhcccccchHHHHHHHHHHhCCCCCcccccCCCeeecc
Q 005905 459 VEVVSKVLGCLQLPYNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCVSFKEIPVVVDA 538 (670)
Q Consensus 459 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~A~~~~~~a~~~g~~p~~~~~~~~~~~~~ 538 (670)
..||..+++|+...++...+..|.+.+++.+...++..|+++++++|.+.++|+.++++|..+|++|+.++..+.|++|.
T Consensus 847 ~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~ 926 (1060)
T PLN03218 847 MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKSPIVIDA 926 (1060)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccCceEEEc
Confidence 99999999999888889999999999999999999999999999999888899999999999999999998877899999
Q ss_pred ccCcchhhHHHHHHHHHHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhCCCCCCCCccc
Q 005905 539 RKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYG 618 (670)
Q Consensus 539 ~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~p~~~~~~~g 618 (670)
+++++++|++++++||++|++++++|.++|++.+++|+++++++|++|+++++.++||+++|++|||||++|||++++.|
T Consensus 927 ~~~~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~g 1006 (1060)
T PLN03218 927 EELPVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPYQGSESHG 1006 (1060)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEechHhHHhhhcCcCCCCCCCCCCCCch--hhhhhhHHHHHhhhhccCCcCC
Q 005905 619 KIRINGLALKRWFQPKLASPFSGKPGELSS--LQLGKFITHQQRNIRTGNLSLE 670 (670)
Q Consensus 619 ~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 670 (670)
||++|++++++|||+|.++||+++|+++++ ++|||+|+|||||||+||+|||
T Consensus 1007 ~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1060 (1060)
T PLN03218 1007 KLRINGLSLRRWFQPKLKSPFSGKPEDLSSSQSRLGKGIADQQRAIRLGNLSLE 1060 (1060)
T ss_pred eEEeccHHHHHHhcccCCCCCCCCccccccchhhhhhhHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999774 9999999999999999999996
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.1e-67 Score=603.61 Aligned_cols=545 Identities=19% Similarity=0.287 Sum_probs=434.4
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHH
Q 005905 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVY----------------------------------HARFF 68 (670)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~g~~~~~~~~----------------------------------~~~l~ 68 (670)
+++++||.++ +.|++++|+++|++|...|+.|+..++ ...++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 3455666655 899999999999999998887754433 23456
Q ss_pred HHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH----
Q 005905 69 NVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---- 144 (670)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~---- 144 (670)
..|.+.|++++|.++|+.|+.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~ 309 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGRE 309 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Confidence 6677889999999999999999999999999999999999999999999999888887777766666665555543
Q ss_pred -------------------------------HHH---h-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC
Q 005905 145 -------------------------------AMF---E-NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP 189 (670)
Q Consensus 145 -------------------------------~~~---~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p 189 (670)
++. + ...||.++||+||.+|++.|++++|+++|++|.+. ++.|
T Consensus 310 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~--g~~P 387 (857)
T PLN03077 310 MHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD--NVSP 387 (857)
T ss_pred HHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCC
Confidence 322 2 23577778888888888888888888888888765 6788
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------
Q 005905 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-------------- 255 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------------- 255 (670)
|..||++++.+|++.|+++.|.++++.|.+.|+.++..+||+||++|++.|++++|.++|++|.+.
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~ 467 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRL 467 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 888888888888888888888888888888887777777777777777777777777766665432
Q ss_pred ----------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 256 ----------------GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319 (670)
Q Consensus 256 ----------------g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (670)
++.||..||+++|.+|++.|.++.+.+++..+.+.|+.+|..++|+||++|+++|++++|.++|
T Consensus 468 ~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 468 NNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 4567777777777777777777777777777778888888888888889999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCC
Q 005905 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK-EDGVI 398 (670)
Q Consensus 320 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~g~~ 398 (670)
+.+ .||..+||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|. +.|+.
T Consensus 548 ~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 548 NSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred Hhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 887 589999999999999999999999999999999999999999999999999999999999999999 68999
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHhHHHhhhhcCCCccchhhhHHHHHHHHHHHHHcCCCCcHHHHHHHHhhccCCCchhHH
Q 005905 399 PNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIR 478 (670)
Q Consensus 399 p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~P~~~~~~~ll~~~~~~~~~~~~ 478 (670)
|+..||+|++++|+| +|.+.+ |.+++++| +++||..+|..+++.|+.+++.++.
T Consensus 623 P~~~~y~~lv~~l~r----~G~~~e-------------------A~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 623 PNLKHYACVVDLLGR----AGKLTE-------------------AYNFINKM---PITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred CchHHHHHHHHHHHh----CCCHHH-------------------HHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHH
Confidence 999999999999887 333333 34455555 4899999999999999999999998
Q ss_pred HHHHHh-cCCCcc-ccccccchhhhhcccccchHHHHHHHHHHhCCCC--CcccccCC----CeeeccccCcchhhHHHH
Q 005905 479 ERLVEN-LGVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIV--PCVSFKEI----PVVVDARKLEIHTAKVYL 550 (670)
Q Consensus 479 ~~~~~~-~~~~~~-~~~~~~~~~l~~~~g~~~~~A~~~~~~a~~~g~~--p~~~~~~~----~~~~~~~~~~~~~~~i~~ 550 (670)
+.+.+. +.+.|+ +..|..+..++...|+|++ |.+++++|.+.|+. |+++|++- +.|+.+|.+||.+.+||.
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~-a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~ 755 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDE-VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINT 755 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHH-HHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHH
Confidence 887654 556664 4445544567888999986 77999999999996 88888742 567888999999999996
Q ss_pred HHHHHHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhCCCC
Q 005905 551 LTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPY 611 (670)
Q Consensus 551 l~~l~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~p~ 611 (670)
.|+.|..+|+..||+|+++.++++++. .+.+.....+++|+.+++-+-..=|.|.
T Consensus 756 --~l~~l~~~~~~~g~~~~~~~~~~~~~~----~k~~~~~~hse~la~a~~l~~~~~~~~i 810 (857)
T PLN03077 756 --VLEGFYEKMKASGLAGSESSSMDEIEV----SKDDIFCGHSERLAIAFGLINTVPGMPI 810 (857)
T ss_pred --HHHHHHHHHHhCCcCCCcchhccccHH----HHHHHHHhccHHHHHHHhhhcCCCCCeE
Confidence 999999999999999999888755432 1112223334555655544433434443
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.5e-64 Score=568.27 Aligned_cols=505 Identities=19% Similarity=0.281 Sum_probs=451.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC----CCCHHHHHHHHHHHHcCCC
Q 005905 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKD 107 (670)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~y~~li~~~~~~g~ 107 (670)
...+.+.|++++|+++|+.|...+..+++...+..++..|.+.++++.|.+++..|. .||..+||.++.+|++.|+
T Consensus 94 i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~ 173 (697)
T PLN03081 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM 173 (697)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCC
Confidence 344458999999999999999876334455555668889999999999999998773 6899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh--------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSGAVDRAFDVLAE 179 (670)
Q Consensus 108 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 179 (670)
++.|.++|++|. .||..+|+++|.+|++.|+++++++ ++.||..+|+.++.+|++.|..+.+.+++..
T Consensus 174 ~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~ 249 (697)
T PLN03081 174 LIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249 (697)
T ss_pred HHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999999996 4899999999999999999988654 6789999999999999999999999999999
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005905 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259 (670)
Q Consensus 180 m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 259 (670)
+.+. |+.||..+|++++++|+++|++++|.++|++|.. +|..+||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 250 ~~~~--g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 250 VLKT--GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHh--CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9886 6899999999999999999999999999999964 578999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005905 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339 (670)
Q Consensus 260 ~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 339 (670)
|..||++++.+|++.|++++|.+++..|.+.|+.||..+||+||++|+++|++++|.++|++|. .||..+||+||.
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~ 399 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIA 399 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997 689999999999
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhhHHHH
Q 005905 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSRRYEKA 418 (670)
Q Consensus 340 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~r~~~~a 418 (670)
+|+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+++|++|++ +
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r----~ 475 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR----E 475 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh----c
Confidence 9999999999999999999999999999999999999999999999999999986 7999999999999999887 3
Q ss_pred HHhHHHhhhhcCCCccchhhhHHHHHHHHHHHHHcCCCCcHHHHHHHHhhccCCCchhHHHHHHHh-cCCCcc-cccccc
Q 005905 419 RTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQLPYNADIRERLVEN-LGVSAD-ALKRSN 496 (670)
Q Consensus 419 ~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~P~~~~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~ 496 (670)
|.+.+ |.++|++| ++.|+..+|..++..|..+++.+.++.+.+. +++.|+ ...|..
T Consensus 476 G~~~e-------------------A~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~ 533 (697)
T PLN03081 476 GLLDE-------------------AYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV 533 (697)
T ss_pred CCHHH-------------------HHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence 33333 33344433 6899999999999888888888887777654 566664 456666
Q ss_pred chhhhhcccccchHHHHHHHHHHhCCCC--CcccccCC----CeeeccccCcchhhHHHHHHHHHHHHHhhhhCCCCCCc
Q 005905 497 LCSLIDGFGEYDPRAFSLLEEAASFGIV--PCVSFKEI----PVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNV 570 (670)
Q Consensus 497 ~~~l~~~~g~~~~~A~~~~~~a~~~g~~--p~~~~~~~----~~~~~~~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~ 570 (670)
+..++...|+|++ |.+++++|.+.|+. |+++|++- +.|+.+|.+||.+.+||. .|+.|..+|+..||+|++
T Consensus 534 L~~~y~~~G~~~~-A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~--~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 534 LLNLYNSSGRQAE-AAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQ--KLDELMKEISEYGYVAEE 610 (697)
T ss_pred HHHHHHhCCCHHH-HHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHH--HHHHHHHHHHHcCCCCCc
Confidence 6667788898875 88999999999985 88888642 467888999999999995 999999999999999999
Q ss_pred eEeccCccc
Q 005905 571 NILLPVEKT 579 (670)
Q Consensus 571 ~~~l~~~~~ 579 (670)
..++++.+.
T Consensus 611 ~~~~~~~~~ 619 (697)
T PLN03081 611 NELLPDVDE 619 (697)
T ss_pred chhhccccH
Confidence 998877654
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-58 Score=534.65 Aligned_cols=486 Identities=19% Similarity=0.300 Sum_probs=396.5
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHH----------------------------------HHHHHHH
Q 005905 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH----------------------------------ARFFNVC 71 (670)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~----------------------------------~~l~~~~ 71 (670)
.........+++.|++++|+++|++|.+.|+.|....+. ..++..|
T Consensus 52 ~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~ 131 (857)
T PLN03077 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMF 131 (857)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHH
Confidence 334455566779999999999999999988755443321 2344556
Q ss_pred hhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHH--------------------
Q 005905 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYT-------------------- 131 (670)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~-------------------- 131 (670)
.+.|+++.|.++|+.|++||+.+||++|.+|++.|++++|+++|++|...|+.||.+||+
T Consensus 132 ~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~ 211 (857)
T PLN03077 132 VRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211 (857)
T ss_pred HhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence 778899999999999999999999999999999999999999999999999988877774
Q ss_pred ---------------HHHHHHHhcCCHHHHH---hc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHH
Q 005905 132 ---------------TLITTCAKSGKVDAMF---EN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192 (670)
Q Consensus 132 ---------------~li~~~~~~g~~~~~~---~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~ 192 (670)
+||.+|+++|+++.+. +. ..||.++||+||.+|++.|++++|+++|.+|... |+.||.+
T Consensus 212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~--g~~Pd~~ 289 (857)
T PLN03077 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL--SVDPDLM 289 (857)
T ss_pred HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChh
Confidence 5556667777776643 33 4689999999999999999999999999999885 6888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-------------------------------HHHHhcCC
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI-------------------------------NCCSQTGD 241 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-------------------------------~~~~~~g~ 241 (670)
||+.++.+|++.|+++.|.+++..|.+.|+.||..+||+|| .+|++.|+
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~ 369 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL 369 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCC
Confidence 88888888888777777777777777777766666555555 45555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
+++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+||+||++|+++|++++|.++|++
T Consensus 370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666677777888888888888888888888888888888888888888888889999999999999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005905 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401 (670)
Q Consensus 322 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 401 (670)
|. .+|.++||+||.+|++.|+.++|+++|++|.. ++.||..||+.++.+|++.|.++.+.+++..|.+.|+.++.
T Consensus 450 m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 450 IP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred CC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 87 57888999999999999999999999999986 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHhHHHhhhhcCCCccchhhhHH------------HHHHHHHHHHHcCCCCcHHHHHHHH-hh
Q 005905 402 VMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTS------------LALMVYREAIVAGTIPTVEVVSKVL-GC 468 (670)
Q Consensus 402 ~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~------------~A~~~~~~m~~~~~~P~~~~~~~ll-~~ 468 (670)
.++++||++|++ +|++.+|...|+.+ ..+...|+. +|+++|++|.+.|+.||..||..++ +|
T Consensus 525 ~~~naLi~~y~k----~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 525 FLPNALLDLYVR----CGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred eechHHHHHHHH----cCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 999999999665 56666666666666 556667774 6999999999999999999999998 55
Q ss_pred ccCC---CchhHHHHHHHhcCCCccccccccchhhhhcccccchHHHHHHHHHHhCCCCCcc
Q 005905 469 LQLP---YNADIRERLVENLGVSADALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 527 (670)
Q Consensus 469 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~A~~~~~~a~~~g~~p~~ 527 (670)
++.+ +..++++.|.+..++.|+..+|..++.++...|+++ +|.+++++| .+.|+.
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~-eA~~~~~~m---~~~pd~ 657 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT-EAYNFINKM---PITPDP 657 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHH-HHHHHHHHC---CCCCCH
Confidence 5543 345567777778899999999986555555556544 698999887 456764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.8e-56 Score=503.93 Aligned_cols=439 Identities=22% Similarity=0.374 Sum_probs=387.2
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC----CCCHHHHHHH
Q 005905 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNML 98 (670)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~y~~l 98 (670)
|+..+|+.++ +.|++++|.++|++|.+.|+.|+...+ ..++..|.+.|++++|.++|+.|. .||..+||.|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~ty-nsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLY-TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5566666655 799999999999999999987655554 458889999999999999999986 6999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh----------cCCCCHHHHHHHHHHHHhcC
Q 005905 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----------NVKPDRVVFNALITACGQSG 168 (670)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~----------~~~~~~~~~~~li~~~~~~g 168 (670)
|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|+++++++ ++.||.++|++||.+|++.|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999987654 36899999999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 169 ~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
++++|.++|++|.+. ++.|+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|++|++.|++++|.++
T Consensus 594 ~ldeA~elf~~M~e~--gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 594 QVDRAKEVYQMIHEY--NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999986 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 328 (670)
|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.
T Consensus 672 ~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHH
Q 005905 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----K-------------------DDVEVG 385 (670)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a 385 (670)
||..||+++|.+|++.|++++|.++|.+|.+.|+.||..+|++++..|.+ . +..++|
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 99999999999999999999999999999999999999999999976542 1 224679
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhhHHHHHHhHHHhhhhcCCCccchhhhHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 005905 386 LMLLSQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKV 465 (670)
Q Consensus 386 ~~~~~~m~~~g~~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~P~~~~~~~l 465 (670)
..+|++|++.|+.||..+|+.+|..+.. .+ ....+..++++|...+..|+..++..+
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~----~~-------------------~~~~~~~m~~~m~~~~~~~~~~~y~~L 888 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQL----PH-------------------DATLRNRLIENLGISADSQKQSNLSTL 888 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcc----cc-------------------cHHHHHHHHHHhccCCCCcchhhhHHH
Confidence 9999999999999999999999965422 00 112344566666666777777788777
Q ss_pred Hhhc-cC-CCchhHHHHHHHhcCCCcccc
Q 005905 466 LGCL-QL-PYNADIRERLVENLGVSADAL 492 (670)
Q Consensus 466 l~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 492 (670)
+.++ .. ++...+.+.|. ..|+.|+..
T Consensus 889 i~g~~~~~~~A~~l~~em~-~~Gi~p~~~ 916 (1060)
T PLN03218 889 VDGFGEYDPRAFSLLEEAA-SLGVVPSVS 916 (1060)
T ss_pred HHhhccChHHHHHHHHHHH-HcCCCCCcc
Confidence 7433 22 12333333332 356777543
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=8.3e-53 Score=475.70 Aligned_cols=402 Identities=18% Similarity=0.238 Sum_probs=364.6
Q ss_pred cccccCCCCCccccCCCchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC
Q 005905 8 MLQFPYPNGKHANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (670)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (670)
++.++.+......+.++...+.....++.+.++++.|.+++..|.+.|+.|+. .++..++..+.+.|++++|.++|+.|
T Consensus 106 Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~-~~~n~Li~~y~k~g~~~~A~~lf~~m 184 (697)
T PLN03081 106 ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ-YMMNRVLLMHVKCGMLIDARRLFDEM 184 (697)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcch-HHHHHHHHHHhcCCCHHHHHHHHhcC
Confidence 34444444443344555555555555566889999999999999999987754 44555789999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh--------cCCCCHHHHHH
Q 005905 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNA 159 (670)
Q Consensus 88 ~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~--------~~~~~~~~~~~ 159 (670)
+.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+ ++.||..+||+
T Consensus 185 ~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 9999999999999999999999999999999999999999999999999999998876433 67899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005905 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239 (670)
Q Consensus 160 li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 239 (670)
||++|++.|++++|.++|++|. .+|.++|+++|.+|++.|++++|.++|++|.+.|+.||..+|++++.+|++.
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMP------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999995 4689999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319 (670)
Q Consensus 240 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (670)
|++++|.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|. .+|..+||+||.+|++.|+.++|.++|
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf 414 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMF 414 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 468999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005905 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398 (670)
Q Consensus 320 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~ 398 (670)
++|.+.|+.||..||+++|.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.
T Consensus 415 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~ 491 (697)
T PLN03081 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFK 491 (697)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCC
Confidence 9999999999999999999999999999999999999986 699999999999999999999999999998754 789
Q ss_pred CCHHHHHHHHHHHHh--hHHHHHHhHH
Q 005905 399 PNLVMFKCIIGMCSR--RYEKARTLNE 423 (670)
Q Consensus 399 p~~~~~~~li~~~~r--~~~~a~~l~~ 423 (670)
|+..+|++|+.+|.. .++.+....+
T Consensus 492 p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 492 PTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 999999999999876 4555544433
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=8.9e-22 Score=231.80 Aligned_cols=472 Identities=15% Similarity=0.074 Sum_probs=251.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHH
Q 005905 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEG 110 (670)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~ 110 (670)
.+.+.|++++|++.++++.... |.+......+...+...|++++|.++|+.+. +.+...|..+...+...|++++
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 415 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSE 415 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHH
Confidence 3345666666666666655544 3333344444555555556666665555432 2233444444455555555555
Q ss_pred HHHHHHHHHHcC---------------------------------CCCCHHHHHHHHHHHHhcCCHHHHHh-------cC
Q 005905 111 AFQVLRLVQEAG---------------------------------LKADCKLYTTLITTCAKSGKVDAMFE-------NV 150 (670)
Q Consensus 111 A~~~~~~m~~~g---------------------------------~~pd~~~~~~li~~~~~~g~~~~~~~-------~~ 150 (670)
|...|+.+.+.. .+++..++..+..+|...|+++++.+ ..
T Consensus 416 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 416 AIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 555555444432 22344455555555555555544322 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005905 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230 (670)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 230 (670)
+.+...+..+...+...|++++|.+.|+++.... +.+..++..+...+.+.|+.++|..+++++.+.+ +.+...+.
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 571 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID---PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPAL 571 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHH
Confidence 2334445555555555555555555555555431 2234455555555556666666666666555543 34445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g 310 (670)
.++..|.+.|++++|..+++++.+.. +.+..+|..+..+|...|++++|...++.+.+.. +.+...+..+..+|.+.|
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 649 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMK 649 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 66666666666666666666665543 2355566666666666666666666666666543 334555666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390 (670)
Q Consensus 311 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 390 (670)
++++|..+|+++.+.. +.+..+|..++..+...|++++|.++++.+.+.. +++...+..+...+...|++++|...|+
T Consensus 650 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 650 NYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777766666666543 2346666666667777777777777777766653 3455566666666677777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhHHHhhhhcCCCccc---------hhhhHHHHHHHHHHHHHcCCCCcH
Q 005905 391 QAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI---------ENKWTSLALMVYREAIVAGTIPTV 459 (670)
Q Consensus 391 ~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~~---------~~~~~~~A~~~~~~m~~~~~~P~~ 459 (670)
.+...+ |+..++..+..++.+ ++++|....+......+..+.. ..+-..+|+..|+++++. .|+.
T Consensus 728 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~ 803 (899)
T TIGR02917 728 KALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDN 803 (899)
T ss_pred HHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCC
Confidence 666643 444445455555443 4444444333222211111100 011123577777777764 3444
Q ss_pred HHHHHHHhh--ccCCCchhHHHHHHHhcCCCccc-cccccchhhhhcccccchHHHHHHHHHHhC
Q 005905 460 EVVSKVLGC--LQLPYNADIRERLVENLGVSADA-LKRSNLCSLIDGFGEYDPRAFSLLEEAASF 521 (670)
Q Consensus 460 ~~~~~ll~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~g~~~~~A~~~~~~a~~~ 521 (670)
......++. ...+. .+..+.+.+.+...|+. ..+..+..++...|+++ +|.+.++++++.
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~A~~~~~~a~~~ 866 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEAD-RALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH-HHHHHHHHHHhh
Confidence 332222222 22222 44444444444444432 22223334445556654 477788877765
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=1.3e-21 Score=230.49 Aligned_cols=436 Identities=14% Similarity=0.063 Sum_probs=337.8
Q ss_pred HHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005905 67 FFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (670)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 143 (670)
++..+...|++++|+.+++.+. +++..+|+.+...+...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCH
Confidence 3344445566666666665542 3467789999999999999999999999998764 34566788889999999998
Q ss_pred HHHHh-------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005905 144 DAMFE-------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216 (670)
Q Consensus 144 ~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~ 216 (670)
+++.+ ..+.+..++..+...|.+.|+.++|..+|+++.... +.+...+..++..+...|++++|..+++.
T Consensus 516 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 592 (899)
T TIGR02917 516 DDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN---PQEIEPALALAQYYLGKGQLKKALAILNE 592 (899)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 87544 334578889999999999999999999999997752 34566778889999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccH
Q 005905 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296 (670)
Q Consensus 217 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~ 296 (670)
+.+.. +.+..+|..+..+|.+.|++++|...|+++.+... .+...+..+..++...|++++|..+++.+.+.. +.+.
T Consensus 593 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 669 (899)
T TIGR02917 593 AADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNT 669 (899)
T ss_pred HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCH
Confidence 98754 66788999999999999999999999999987653 366788889999999999999999999998865 5568
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 376 (670)
.++..++..+...|++++|.++++.+.+.. +.+...+..+...+...|++++|++.|+++... .|+..++..+..++
T Consensus 670 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 670 EAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHH
Confidence 889999999999999999999999998776 457788888999999999999999999999885 46667888889999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhHHHhhhhcCCCccchhhhH-----------HHH
Q 005905 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQIENKWT-----------SLA 443 (670)
Q Consensus 377 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~~~~~~~-----------~~A 443 (670)
.+.|++++|.+.++.+.+.. +.+...+..+...|.+ ++++|....+......+ .....+. .+|
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~A 822 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP---DNAVVLNNLAWLYLELKDPRA 822 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCcHHH
Confidence 99999999999999988754 4566777777777664 67777666554433322 2211111 358
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHhhc--cCCCchhHHHHHHHhcCCCc-cccccccchhhhhcccccchHHHHHHHHHH
Q 005905 444 LMVYREAIVAGTIPTVEVVSKVLGCL--QLPYNADIRERLVENLGVSA-DALKRSNLCSLIDGFGEYDPRAFSLLEEAA 519 (670)
Q Consensus 444 ~~~~~~m~~~~~~P~~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~g~~~~~A~~~~~~a~ 519 (670)
+.++++++. ..|+...+...++.. ..+.-.+..+.+.+.+...| ++..+.++...+...|+++ +|..++++++
T Consensus 823 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~ 898 (899)
T TIGR02917 823 LEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKA-EARKELDKLL 898 (899)
T ss_pred HHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH-HHHHHHHHHh
Confidence 899999886 456665544444433 34444555555556555555 5555555566677778765 4888888775
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=6.6e-19 Score=186.62 Aligned_cols=300 Identities=15% Similarity=0.088 Sum_probs=226.3
Q ss_pred HhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 71 CKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (670)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~ 147 (670)
....|++++|+..|+.+. +.+..+|..+...+...|++++|..+++.+...+..++..
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~------------------- 105 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ------------------- 105 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-------------------
Confidence 345677888888887764 3355678888888999999999999999888753221111
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--
Q 005905 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT-- 225 (670)
Q Consensus 148 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-- 225 (670)
+...+..+...|.+.|++++|..+|+++.+. -.++..++..++..+.+.|++++|.+.++.+.+.+..+.
T Consensus 106 -----~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 177 (389)
T PRK11788 106 -----RLLALQELGQDYLKAGLLDRAEELFLQLVDE---GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV 177 (389)
T ss_pred -----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC---CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH
Confidence 1124566777788888888888888888764 234567888888888888888888888888877653322
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHH
Q 005905 226 --PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303 (670)
Q Consensus 226 --~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li 303 (670)
...+..+...+.+.|++++|...|+++.+.... +...+..+...+.+.|++++|.++++++.+.+......+++.++
T Consensus 178 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 256 (389)
T PRK11788 178 EIAHFYCELAQQALARGDLDAARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLM 256 (389)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHH
Confidence 124566777888888999999988888876432 45577778888888899999999888888764333346678888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cC
Q 005905 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER---KD 380 (670)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g 380 (670)
.+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|..+|+++.+. .|+..++..++..+.. .|
T Consensus 257 ~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g 332 (389)
T PRK11788 257 ECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEG 332 (389)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCc
Confidence 8888999999999998888776 356566688888888899999999999888774 6888888887777654 45
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH
Q 005905 381 DVEVGLMLLSQAKEDGVIPNLV 402 (670)
Q Consensus 381 ~~~~a~~~~~~m~~~g~~p~~~ 402 (670)
+.+++..++++|.+.++.|++.
T Consensus 333 ~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 333 RAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred cchhHHHHHHHHHHHHHhCCCC
Confidence 8888888888888877776665
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=3.1e-18 Score=181.43 Aligned_cols=241 Identities=18% Similarity=0.188 Sum_probs=116.0
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005905 163 ACGQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240 (670)
Q Consensus 163 ~~~~~g~~~~A~~l~~~m~~~~~~~~p--d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 240 (670)
.|.+.|++++|..+++.+.... ...+ ....+..+...|.+.|++++|..+|+++.+.. +.+..+++.++..|.+.|
T Consensus 78 ~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g 155 (389)
T PRK11788 78 LFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEK 155 (389)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhc
Confidence 3344444555555555554421 0000 01234445555555555555555555555432 333445555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 005905 241 DWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 316 (670)
++++|.+.++.+.+.+..++. ..+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 234 (389)
T PRK11788 156 DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAI 234 (389)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHH
Confidence 555555555555544332211 123344444555555555555555555432 223344445555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 317 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
++|+++.+.+......+++.++.+|...|+.++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+.
T Consensus 235 ~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~- 311 (389)
T PRK11788 235 EALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR- 311 (389)
T ss_pred HHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-
Confidence 55555554322111334455555555555555555555555543 344444445555555555555555555555443
Q ss_pred CCCCHHHHHHHHHH
Q 005905 397 VIPNLVMFKCIIGM 410 (670)
Q Consensus 397 ~~p~~~~~~~li~~ 410 (670)
.|+...+..++..
T Consensus 312 -~P~~~~~~~l~~~ 324 (389)
T PRK11788 312 -HPSLRGFHRLLDY 324 (389)
T ss_pred -CcCHHHHHHHHHH
Confidence 3555555544443
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=8.6e-16 Score=171.37 Aligned_cols=336 Identities=10% Similarity=0.015 Sum_probs=230.9
Q ss_pred HHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005905 67 FFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (670)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 143 (670)
++..+.+.|++++|+.+++... +.+...+..++.++...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 3444455566666666655431 2223334444445555666666666666666542 22344555556666666666
Q ss_pred HHHHh------cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005905 144 DAMFE------NV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216 (670)
Q Consensus 144 ~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~ 216 (670)
+++.+ .. +.+...+..+...+...|++++|...++.+... .|+.......+..+...|++++|...++.
T Consensus 127 ~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~----~P~~~~a~~~~~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 127 ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE----VPPRGDMIATCLSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 65443 12 234667778888889999999999999888654 33322222223347788999999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHCCC
Q 005905 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA----AFEILQEAKNQGI 292 (670)
Q Consensus 217 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~----A~~i~~~m~~~~~ 292 (670)
+.+....++...+..+..++.+.|++++|...|++..+.... +...+..+...+...|++++ |...++.+.+..
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 877653344455566677888999999999999998877543 66777788888999999885 788899888765
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHH-HHH
Q 005905 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT-YSI 371 (670)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ 371 (670)
+.+..++..+...+.+.|++++|...+++..+..+ .+...+..+..+|.+.|++++|+..|+++... .|+... +..
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~ 357 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRY 357 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 45677888999999999999999999999887653 35667778888999999999999999998874 465544 333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412 (670)
Q Consensus 372 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (670)
+..++...|+.++|...|++..+..-.-....|.-.+..|.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~ 398 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALD 398 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHH
Confidence 45678889999999999998877532222344444444433
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=6.3e-16 Score=156.92 Aligned_cols=417 Identities=13% Similarity=0.125 Sum_probs=307.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhh---CCCCCHHHHHHHHHHHHcCCCH
Q 005905 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCASSKDS 108 (670)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~y~~li~~~~~~g~~ 108 (670)
-..+-+.|++.+|.+.....-+.+ |.+.....++...+.+..+.+.....-.. ..+.-..+|..+.+.+-..|++
T Consensus 55 ah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 55 AHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 334447899999999888777666 44443333344444444444443322111 1233467899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHh
Q 005905 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NVKPDRVVFNA-LITACGQSGAVDRAFDVLAEMN 181 (670)
Q Consensus 109 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~ 181 (670)
++|+.+|+.+++.. +-....|..+..++...|+.+.+++ .+.|+.....+ +....-..|++++|...|.+..
T Consensus 133 ~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi 211 (966)
T KOG4626|consen 133 QDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAI 211 (966)
T ss_pred HHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHH
Confidence 99999999999863 2256789999999999999887655 35676665443 4445556899999999999988
Q ss_pred hCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005905 182 AEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260 (670)
Q Consensus 182 ~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 260 (670)
+. .|. .+.|+.|...+-..|+...|++.|++..+.+ +.-...|-.|-..|...+.+++|...|.+....... .
T Consensus 212 ~~----qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~ 285 (966)
T KOG4626|consen 212 ET----QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-H 285 (966)
T ss_pred hh----CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-c
Confidence 74 444 5678899999999999999999999998865 444678999999999999999999999888766432 5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005905 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340 (670)
Q Consensus 261 ~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 340 (670)
.+.+..+...|-.+|.++.|...|++..+.. +--...||.|..++-..|++.+|.+.|.+..... .....+.+.|...
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 6778888888999999999999999998865 3336789999999999999999999999988764 2356788999999
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hhHH
Q 005905 341 LCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS---RRYE 416 (670)
Q Consensus 341 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~---r~~~ 416 (670)
|...|++++|..+|....+ +.|. ...++.|...|..+|++++|+..+++.+. |.|+. .++|. ..|.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f------Ada~~NmGnt~k 433 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF------ADALSNMGNTYK 433 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH------HHHHHhcchHHH
Confidence 9999999999999999876 4565 46688888999999999999999998876 56653 22322 2355
Q ss_pred HHHHhHHHhhhhcCCCccchhhhHHHHHHHHHHHHHcCCCCcHHHHHHHHhhcc--CCCchhHHHHHHHhcCCCcc
Q 005905 417 KARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCLQ--LPYNADIRERLVENLGVSAD 490 (670)
Q Consensus 417 ~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~P~~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~~ 490 (670)
+-+++..| +..|.+.+. +.|.-.-..+-|+..+ .+.-.+......+.+.+.||
T Consensus 434 e~g~v~~A-------------------~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 434 EMGDVSAA-------------------IQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HhhhHHHH-------------------HHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 55555444 344444443 4555443333343333 22334455555666666665
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=4.4e-14 Score=158.11 Aligned_cols=376 Identities=11% Similarity=-0.013 Sum_probs=261.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~ 109 (670)
+.+.+.|++++|+..|++..+.. |. ..++..+...+...|++++|++.+.... +.+...|..+..++...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~--p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECK--PD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 45558899999999999998765 54 4455567778888999999999988653 446778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHhcCCCCH---------------------------------
Q 005905 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKS--GKVDAMFENVKPDR--------------------------------- 154 (670)
Q Consensus 110 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~--g~~~~~~~~~~~~~--------------------------------- 154 (670)
+|+.-|......+-..+......+...+.+. ......++..+++.
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 9998887665443211211111111111100 00001111100000
Q ss_pred HHHHHHHHH---HHhcCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005905 155 VVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230 (670)
Q Consensus 155 ~~~~~li~~---~~~~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 230 (670)
..+..+... ....+++++|++.|+.....+ ...| +...+..+...+...|++++|...|+...+.. +.+...|.
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~-~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~ 369 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYI 369 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHH
Confidence 000111101 122367899999999988652 2234 34567777888889999999999999988765 44567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g 310 (670)
.+...+...|++++|...|++..+.... +..+|..+...+...|++++|...|+...+.. +.+...+..+..+|.+.|
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g 447 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCC
Confidence 8899999999999999999999887543 67788889999999999999999999998875 456777888889999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-------HH-HHHHHHHHHHhcCCH
Q 005905 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-------TI-TYSILLVACERKDDV 382 (670)
Q Consensus 311 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------~~-t~~~ll~a~~~~g~~ 382 (670)
++++|...|++..+.. +.+...|+.+...+...|++++|++.|++..+. .|+ .. .+...+..+...|++
T Consensus 448 ~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~ 524 (615)
T TIGR00990 448 SIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDF 524 (615)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhH
Confidence 9999999999987654 336788899999999999999999999998764 232 11 111122223446999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh--hHHHHHH
Q 005905 383 EVGLMLLSQAKEDGVIPNL-VMFKCIIGMCSR--RYEKART 420 (670)
Q Consensus 383 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~r--~~~~a~~ 420 (670)
++|.+++++..+.. |+. ..+..+..++.+ ++++|..
T Consensus 525 ~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 525 IEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 99999999887754 443 345555555443 3444433
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.76 E-value=1.2e-15 Score=154.81 Aligned_cols=392 Identities=15% Similarity=0.139 Sum_probs=301.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHH
Q 005905 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQ 113 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~ 113 (670)
+..+++...+--....+.. |.....+..+.......|++++|+++++.+. +..+..|-.+..++...|+.+.|.+
T Consensus 94 q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~ 171 (966)
T KOG4626|consen 94 QGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQ 171 (966)
T ss_pred cccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHH
Confidence 4455665555544444444 6667777778889999999999999998764 3467889999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHh------cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 005905 114 VLRLVQEAGLKADCKLYT-TLITTCAKSGKVDAMFE------NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185 (670)
Q Consensus 114 ~~~~m~~~g~~pd~~~~~-~li~~~~~~g~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 185 (670)
.|.+.++. .|+.+... .+-......|+++++.. ..+| -.+.|+.|...+-..|++..|+..|++..+.
T Consensus 172 ~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-- 247 (966)
T KOG4626|consen 172 CFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-- 247 (966)
T ss_pred HHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--
Confidence 99998874 57665433 33444445677666443 2234 3578999999999999999999999999864
Q ss_pred CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 186 PVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264 (670)
Q Consensus 186 ~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 264 (670)
.|+ ...|..|...|...+.+++|...|....... +....++..|...|...|+.+.|+..|++.++.... =...|
T Consensus 248 --dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay 323 (966)
T KOG4626|consen 248 --DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAY 323 (966)
T ss_pred --CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHH
Confidence 555 4578889999999999999999998887654 455678888888999999999999999999887433 34689
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 005905 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCD 343 (670)
Q Consensus 265 ~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 343 (670)
+.|..++-..|++.+|.+.|....... +......+.|...|...|.+++|..+|....+. .|. ...+|.|...|-+
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQ 400 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHh
Confidence 999999999999999999999998865 445678889999999999999999999988765 333 5678899999999
Q ss_pred CCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhhHHHHHHh
Q 005905 344 GDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VMFKCIIGMCSRRYEKARTL 421 (670)
Q Consensus 344 ~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~r~~~~a~~l 421 (670)
+|++++|+..+++..+ +.|+. ..|+.+-..|...|+++.|.+.+.+.+..+ |.. ..++-|-.. +.++|.+
T Consensus 401 qgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi----~kDsGni 472 (966)
T KOG4626|consen 401 QGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASI----YKDSGNI 472 (966)
T ss_pred cccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHH----hhccCCc
Confidence 9999999999999887 68874 678888888999999999999998888744 542 222233333 5555655
Q ss_pred HHHhhhhcCCCccchhhhHHHHHHHHHHHHHcCCCCcHH-HHHHHHhhcc
Q 005905 422 NEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTIPTVE-VVSKVLGCLQ 470 (670)
Q Consensus 422 ~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~P~~~-~~~~ll~~~~ 470 (670)
.+ |+..|++.++ ++||.. .+..++-|.+
T Consensus 473 ~~-------------------AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 473 PE-------------------AIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HH-------------------HHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 54 4555666654 677753 3445554444
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.76 E-value=2e-13 Score=162.94 Aligned_cols=485 Identities=14% Similarity=0.072 Sum_probs=239.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHH-HHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHc
Q 005905 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYH-ARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCAS 104 (670)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~ 104 (670)
+..-..+.+.|++++|++.|+.+.+.+ |++..+. ..........++.++|++.++.+. +.+...+..+...+..
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 333444566777777777777777654 3332211 111222233466777777776653 2345566666677777
Q ss_pred CCCHHHHHHHHHHHHHcC----------------C--C--------------CCHHHH---------------------H
Q 005905 105 SKDSEGAFQVLRLVQEAG----------------L--K--------------ADCKLY---------------------T 131 (670)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g----------------~--~--------------pd~~~~---------------------~ 131 (670)
.|++++|+..++++.... . . |+.... .
T Consensus 194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~ 273 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR 273 (1157)
T ss_pred cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence 777777777777654321 0 0 110000 0
Q ss_pred HHHHHHHhcCCHHHHHh-------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHH----------
Q 005905 132 TLITTCAKSGKVDAMFE-------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI---------- 194 (670)
Q Consensus 132 ~li~~~~~~g~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~---------- 194 (670)
.+..++...|+++++.. .-+.+...+..+...|.+.|++++|+..|++..+... -.++...+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p-~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDP-HSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CccchhHHHHHHHhhhHH
Confidence 11233455566665433 1233667777777778888888888888877765421 11111111
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-
Q 005905 195 --GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA- 271 (670)
Q Consensus 195 --~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~- 271 (670)
......+.+.|++++|...|+++.+.. +.+...+..+...|...|++++|++.|++..+.... +...+..+...|
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~ 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 112335567777888888887777764 455666777777777788888888888777765432 333343333333
Q ss_pred -----------------------------------------HhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 005905 272 -----------------------------------------GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310 (670)
Q Consensus 272 -----------------------------------------~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g 310 (670)
...|++++|.+.+++..+.. +-+..++..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 33444455555555444432 223334444444455555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcCC
Q 005905 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI---------TYSILLVACERKDD 381 (670)
Q Consensus 311 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---------t~~~ll~a~~~~g~ 381 (670)
++++|...|+++.+... .+...+..+...+...++.++|+..++.+......++.. .+......+...|+
T Consensus 510 ~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 55555555554443321 122223223333334444444444444432211111111 11122334555566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhHHHhhhhcCCCccc---------hhhhHHHHHHHHHHH
Q 005905 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQI---------ENKWTSLALMVYREA 450 (670)
Q Consensus 382 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~~---------~~~~~~~A~~~~~~m 450 (670)
.++|..+++ . .+++...+..+-+.+.+ .+++|....+......+..+.. ..+-..+|+..|++.
T Consensus 589 ~~eA~~~l~---~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 589 EAEAEALLR---Q--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHH---h--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666554 1 12333334444444433 4555555544433332221110 111123577888876
Q ss_pred HHcCCCCcHHHHHHHHhhc--cCCCchhHHHHHHHhcCCCcc-cc------ccccchhhhhcccccchHHHHHHHHHH-h
Q 005905 451 IVAGTIPTVEVVSKVLGCL--QLPYNADIRERLVENLGVSAD-AL------KRSNLCSLIDGFGEYDPRAFSLLEEAA-S 520 (670)
Q Consensus 451 ~~~~~~P~~~~~~~ll~~~--~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~l~~~~g~~~~~A~~~~~~a~-~ 520 (670)
+. ..|+.......++.+ ..+...+..+.+.+.+...++ +. .+.....++...|++. +|...++.++ .
T Consensus 664 l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~-~A~~~y~~Al~~ 740 (1157)
T PRK11447 664 PA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQ-QALETYKDAMVA 740 (1157)
T ss_pred hc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhh
Confidence 64 455544433333322 233333333333333333331 11 1111223556667654 5888888875 3
Q ss_pred CCCCCccc
Q 005905 521 FGIVPCVS 528 (670)
Q Consensus 521 ~g~~p~~~ 528 (670)
.|+.|..+
T Consensus 741 ~~~~~~~p 748 (1157)
T PRK11447 741 SGITPTRP 748 (1157)
T ss_pred cCCCCCCC
Confidence 45566544
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=8.8e-14 Score=165.94 Aligned_cols=352 Identities=12% Similarity=0.067 Sum_probs=200.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCC---HHHHH------------
Q 005905 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT---LSTFN------------ 96 (670)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~---~~~y~------------ 96 (670)
.+...|++++|+..|++..+.. |.+...+..+..++.+.|++++|+..|++.. .|+ ...|.
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 4457899999999999999877 7777777778888999999999999998653 222 12222
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cC-CCCHHHHHHHHHHHHhcCC
Q 005905 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NV-KPDRVVFNALITACGQSGA 169 (670)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~-~~~~~~~~~li~~~~~~g~ 169 (670)
.....+.+.|++++|+..|+++++.. +.+...+..+..++...|+++++.+ .. +.+...+..+...|. .++
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcC
Confidence 12346778999999999999999874 3466778888999999999887654 12 334555555555553 345
Q ss_pred HHHHHHHHHHHhhCCCC-C-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 005905 170 VDRAFDVLAEMNAEVHP-V-----DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~-~-----~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (670)
.++|+.+++.+...... + ......+..+...+...|++++|.+.|++..+.. +.+..++..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 56666655544321000 0 0001234445555566666666666666665544 334555555666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------------------------------
Q 005905 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-------------------------------- 291 (670)
Q Consensus 244 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~-------------------------------- 291 (670)
+|...|+++.+.... +...+..+...+...++.++|...++.+....
T Consensus 513 ~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 666666666544322 22222222233344455555555444432211
Q ss_pred -------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 005905 292 -------ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364 (670)
Q Consensus 292 -------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 364 (670)
.+.+...+..+...|.+.|++++|...|++..+.. +.+...+..++..|...|++++|++.|+...+. .|
T Consensus 592 A~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p 668 (1157)
T PRK11447 592 AEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--AN 668 (1157)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 12233344445555555555555555555555443 224445555555555555555555555544432 22
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 365 N-TITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 365 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+ ..++..+..++...|++++|.++++.+..
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 2 23333344444455555555555555544
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.71 E-value=4.2e-13 Score=149.91 Aligned_cols=316 Identities=11% Similarity=0.032 Sum_probs=247.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cC-CCCHHHHHHHHHHHHhc
Q 005905 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NV-KPDRVVFNALITACGQS 167 (670)
Q Consensus 95 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~-~~~~~~~~~li~~~~~~ 167 (670)
...++..+.+.|+++.|..+++..+..... +...+..++.++...|+++.+.+ .. +.+...|..+...+.+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 345677888999999999999999887433 34455556667777999987655 23 34567888899999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 168 GAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246 (670)
Q Consensus 168 g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (670)
|++++|+..|++.... .|+ ...+..+...+...|++++|...++.+.... +.+...+..+. .+.+.|++++|.
T Consensus 124 g~~~~Ai~~l~~Al~l----~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~~-~l~~~g~~~eA~ 197 (656)
T PRK15174 124 KQYATVADLAEQAWLA----FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATCL-SFLNKSRLPEDH 197 (656)
T ss_pred CCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHHH-HHHHcCCHHHHH
Confidence 9999999999999874 444 5677788899999999999999999887765 33444554443 478899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH----HHHHHHHH
Q 005905 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK----ALELYEHM 322 (670)
Q Consensus 247 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m 322 (670)
..++.+.+....++...+..+..++...|++++|...++.+.+.. +.+...+..+...|...|++++ |...|++.
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999999887554555566666788899999999999999999875 5567888899999999999986 89999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005905 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401 (670)
Q Consensus 323 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 401 (670)
.+..+ .+...+..+...+...|++++|+..+++.... .|+ ...+..+..++...|++++|...|+.+.+.. |+.
T Consensus 277 l~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~ 351 (656)
T PRK15174 277 LQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVT 351 (656)
T ss_pred HhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccc
Confidence 87753 36788999999999999999999999999875 454 5566677888999999999999999988753 544
Q ss_pred HHHHH-HHHHHHh--hHHHHHHhHH
Q 005905 402 VMFKC-IIGMCSR--RYEKARTLNE 423 (670)
Q Consensus 402 ~~~~~-li~~~~r--~~~~a~~l~~ 423 (670)
..+.. +..++.. ++++|....+
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33222 2223322 4555555444
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.68 E-value=4.6e-13 Score=149.90 Aligned_cols=348 Identities=11% Similarity=0.016 Sum_probs=247.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~ 109 (670)
.++.+.|++++|++.++..++.+ |.....+.....++...|++++|+..|.... ..+......++.-+.. .
T Consensus 168 ~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~ 241 (615)
T TIGR00990 168 ACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----K 241 (615)
T ss_pred HHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----H
Confidence 34558899999999999999887 7776666668888999999999998775432 1111111111111111 0
Q ss_pred HHHHHHHHHHHcCC--CCCHH---------------------------HHHHHHHHH------HhcCCHHHHHh------
Q 005905 110 GAFQVLRLVQEAGL--KADCK---------------------------LYTTLITTC------AKSGKVDAMFE------ 148 (670)
Q Consensus 110 ~A~~~~~~m~~~g~--~pd~~---------------------------~~~~li~~~------~~~g~~~~~~~------ 148 (670)
.+........+... .|... .-..++..+ ...++++++.+
T Consensus 242 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al 321 (615)
T TIGR00990 242 FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKAL 321 (615)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 11111111111100 00000 000001100 11133443322
Q ss_pred -c--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005905 149 -N--VKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIK 223 (670)
Q Consensus 149 -~--~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 223 (670)
. ..| +...|+.+...+...|++++|+..|++.... .|+ ...|..+...+...|++++|...|+.+.+.+ +
T Consensus 322 ~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l----~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p 396 (615)
T TIGR00990 322 DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL----DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-S 396 (615)
T ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence 1 123 4567888889999999999999999999874 455 5578888889999999999999999998875 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHH
Q 005905 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303 (670)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li 303 (670)
.+..+|..+...|...|++++|...|++.++.... +...+..+..++.+.|++++|+..++...+.. +.+..+++.+.
T Consensus 397 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg 474 (615)
T TIGR00990 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYG 474 (615)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 67889999999999999999999999999987643 56778888889999999999999999998764 55678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 005905 304 GACSNAKNWQKALELYEHMKSIKLKPTV------STMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVAC 376 (670)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 376 (670)
..+...|++++|.+.|++..+.....+. ..++.....+...|++++|.+++++.... .|+ ...+..+...+
T Consensus 475 ~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 475 ELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLL 552 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 9999999999999999998876422111 12222333444579999999999998774 344 45688889999
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 005905 377 ERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 377 ~~~g~~~~a~~~~~~m~~~ 395 (670)
...|++++|..+|++..+.
T Consensus 553 ~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 553 LQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.68 E-value=3.7e-12 Score=145.40 Aligned_cols=389 Identities=12% Similarity=0.066 Sum_probs=272.1
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC---CCCCHHHHHHHHHHHHc
Q 005905 29 LHSYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCAS 104 (670)
Q Consensus 29 ~~~~~~l~-~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~y~~li~~~~~ 104 (670)
+.=|..+. ..|+.++|++++.+..... |.....+..+..++...|++++|..+|+.. .+.+...+..+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33344443 7999999999999998744 555656666888889999999999999874 34567778888899999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh-------cCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------NVKPDRVVFNALITACGQSGAVDRAFDVL 177 (670)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 177 (670)
.|++++|+..++++.+.. +.+.. +..+..++...|+.+++.. .-+.+...+..+...+...|..++|+..+
T Consensus 96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999999999998873 34556 8888889999999887654 22345666777888888999999999998
Q ss_pred HHHhhCCCCCCCCHH------HHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCCH-HHH----HHHHHHHH
Q 005905 178 AEMNAEVHPVDPDHI------TIGALMKACA-----NAGQV---DRAREVYKMIHKY-NIKGTP-EVY----TIAINCCS 237 (670)
Q Consensus 178 ~~m~~~~~~~~pd~~------t~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~~~~-~~~----~~li~~~~ 237 (670)
+.... .|+.. ....++.... ..+++ ++|++.++.+.+. ...|+. ..+ ...+.++.
T Consensus 174 ~~~~~-----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 174 DDANL-----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HhCCC-----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 87653 33320 1111222221 22334 7788888888764 112221 111 11134456
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc---cHHHHHHHHHHHHhcCCHH
Q 005905 238 QTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV---GIISYSSLMGACSNAKNWQ 313 (670)
Q Consensus 238 ~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~ 313 (670)
..|++++|...|+++.+.+.. |+. ....+..+|...|++++|...|+.+.+..... .......+..++...|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 779999999999999887643 332 22235678899999999999999987654211 1345667777889999999
Q ss_pred HHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005905 314 KALELYEHMKSIKL-----------KPT---VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379 (670)
Q Consensus 314 ~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 379 (670)
+|..+++.+.+... .|+ ...+..+...+...|+.++|+++|+++... .+-+...+..+...+...
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 99999998876531 123 235567778888999999999999998875 244566777788888899
Q ss_pred CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh--hHHHHHHhHHHhhhhcC
Q 005905 380 DDVEVGLMLLSQAKEDGVIPNL-VMFKCIIGMCSR--RYEKARTLNEHVLSFNS 430 (670)
Q Consensus 380 g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~r--~~~~a~~l~~a~~~~~~ 430 (670)
|++++|++.+++..+.. |+. ..+......+.+ ++++|..+.+......+
T Consensus 407 g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 407 GWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred CCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 99999999999888743 553 333333323222 67777777665544333
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=7.2e-12 Score=122.68 Aligned_cols=308 Identities=16% Similarity=0.204 Sum_probs=190.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHh-----------------------------hhhhHHHHH
Q 005905 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCK-----------------------------SQKAIKEAF 81 (670)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~-----------------------------~~~~~~~A~ 81 (670)
..-.++..|.+.++.-+|+.|...|+.- ..-+...++++.. +.|+ -|-
T Consensus 121 nL~kmIS~~EvKDs~ilY~~m~~e~~~v-S~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~--vAd 197 (625)
T KOG4422|consen 121 NLLKMISSREVKDSCILYERMRSENVDV-SEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA--VAD 197 (625)
T ss_pred HHHHHHhhcccchhHHHHHHHHhcCCCC-CHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc--HHH
Confidence 3445668999999999999999998743 3333222333221 1111 122
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH---HH-HhcCCCCHHHH
Q 005905 82 RFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD---AM-FENVKPDRVVF 157 (670)
Q Consensus 82 ~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~---~~-~~~~~~~~~~~ 157 (670)
-+|+. .+.+..+|..||.++|+--..+.|.++|.+-.....+.+..+||.+|.+-+-...-+ ++ -..+.||..||
T Consensus 198 L~~E~-~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 198 LLFET-LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred HHHhh-cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhH
Confidence 22333 345567889999999999999999999998888777888888888887654332211 22 22567777777
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH----cCCCC----
Q 005905 158 NALITACGQSGAVDR----AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR-AREVYKMIHK----YNIKG---- 224 (670)
Q Consensus 158 ~~li~~~~~~g~~~~----A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~~---- 224 (670)
|+++.+.++.|+++. |++++.+|++- |+.|...+|..+|..+++.++..+ |..+..++.. ..++|
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKei--GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~ 354 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEI--GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT 354 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHh--CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc
Confidence 777777777776553 44566666664 677777777777777777666533 3333333322 11221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHH
Q 005905 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG----VIPD---EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297 (670)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~---~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~ 297 (670)
+..-|...++.|.+..+.+.|.++..-+.... +.|+ .+-|..+....|.....+.-...|+.|+-.-.-|+..
T Consensus 355 d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 355 DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 33445566677777777777766655443221 1222 1234556666666777777777777776666666677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG 344 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 344 (670)
+...++++..-.|.++-..+++.+++..|...+...-..++..+++.
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 77777777777777777777777777666444444444444444433
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.66 E-value=1.5e-11 Score=140.91 Aligned_cols=463 Identities=10% Similarity=-0.025 Sum_probs=283.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCC-HHHHHHHHHHHHcCCCHHHHHH
Q 005905 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEGAFQ 113 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~y~~li~~~~~~g~~~~A~~ 113 (670)
..|++++|+..|++..+.. |.+...+..+..++...|+.++|+..+++.. .|+ ...+..+ ..+ +++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHH
Confidence 4699999999999999988 8888888889999999999999999998764 343 4444443 333 89999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHH--------HHhcCCHHHHHh--cCCC--CHHHHH-HHHHHHHhcCCHHHHHHHHHHH
Q 005905 114 VLRLVQEAGLKADCKLYTTLITT--------CAKSGKVDAMFE--NVKP--DRVVFN-ALITACGQSGAVDRAFDVLAEM 180 (670)
Q Consensus 114 ~~~~m~~~g~~pd~~~~~~li~~--------~~~~g~~~~~~~--~~~~--~~~~~~-~li~~~~~~g~~~~A~~l~~~m 180 (670)
+|+++.... +-+..++..+... |.+.+...++.+ ...| +..+.. .+...|.+.|++++|++++.++
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999874 3345566666555 666666555544 1223 344444 4489999999999999999999
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 005905 181 NAEVHPVDPDHITIGALMKACAN-AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--- 256 (670)
Q Consensus 181 ~~~~~~~~pd~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--- 256 (670)
.+.+ ..+..-...+..+|.. .++ +.+..+++. .++.++.++..+.+.|.+.|+.++|..+++++....
T Consensus 209 ~k~~---pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 209 RQQN---TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HhcC---CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 8762 1222223334444444 244 444444332 112344455555555555555555555544432110
Q ss_pred --------------------------------------------------------------------------------
Q 005905 257 -------------------------------------------------------------------------------- 256 (670)
Q Consensus 257 -------------------------------------------------------------------------------- 256 (670)
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence
Q ss_pred ------------------------------------------------CCCCHHHHHHHHHHHHhcCC---hHHHHHH--
Q 005905 257 ------------------------------------------------VIPDEVFLSALIDFAGHAGK---VEAAFEI-- 283 (670)
Q Consensus 257 ------------------------------------------------~~p~~~t~~~li~~~~~~g~---~~~A~~i-- 283 (670)
-.++......++..|.+.+. ...+..+
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 01111122233444443333 1111111
Q ss_pred --------------------HHHHHHC-CC-Cc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005905 284 --------------------LQEAKNQ-GI-SV--GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339 (670)
Q Consensus 284 --------------------~~~m~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 339 (670)
....... +. ++ +...|..+..++.. ++.++|...|.+.... .|+......+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~ 517 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAY 517 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHH
Confidence 0111000 11 33 67788888888877 7888899988877655 466544434455
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH--hhHH
Q 005905 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL-VMFKCIIGMCS--RRYE 416 (670)
Q Consensus 340 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~--r~~~ 416 (670)
.+...|++++|...|+++... .|+...+..+..++.+.|+.++|..+++...+.. |+. ..+..+...+. .+++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHH
Confidence 556899999999999987653 5555666677778889999999999999888764 433 33333322321 2466
Q ss_pred HHHHhHHHhhhhcCCCccc---------hhhhHHHHHHHHHHHHHcCCCCcHHHHHHHHhhc--cCCCchhHHHHHHHhc
Q 005905 417 KARTLNEHVLSFNSGRPQI---------ENKWTSLALMVYREAIVAGTIPTVEVVSKVLGCL--QLPYNADIRERLVENL 485 (670)
Q Consensus 417 ~a~~l~~a~~~~~~~~~~~---------~~~~~~~A~~~~~~m~~~~~~P~~~~~~~ll~~~--~~~~~~~~~~~~~~~~ 485 (670)
+|....+......+. +.. ..+-.++|+..|++.+. ..|+...+...++.. ..+...+....+.+.+
T Consensus 594 eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666655443333331 100 11122468888888886 578877766666533 3444455555556666
Q ss_pred CCCcc-ccccccchhhhhcccccchHHHHHHHHHHhCCCCCcc
Q 005905 486 GVSAD-ALKRSNLCSLIDGFGEYDPRAFSLLEEAASFGIVPCV 527 (670)
Q Consensus 486 ~~~~~-~~~~~~~~~l~~~~g~~~~~A~~~~~~a~~~g~~p~~ 527 (670)
.+.|+ +..+.++..++...|+.+ .|...++++++. .|+.
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~-eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMA-ATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhc--CCCC
Confidence 66663 444455556777778765 488889988866 5644
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.61 E-value=6.7e-11 Score=132.79 Aligned_cols=349 Identities=13% Similarity=0.080 Sum_probs=225.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHH-HHHHH--HHHHHcCCCHHHHH
Q 005905 37 RQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLS-TFNML--MSVCASSKDSEGAF 112 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~g~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~y~~l--i~~~~~~g~~~~A~ 112 (670)
+.|+++.|++.|++..+.. |.+. .++ -++.++...|+.++|+..+++...|+.. .+..+ ...+...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999999887 6553 333 4666777789999999999988665332 33333 56788889999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 005905 113 QVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186 (670)
Q Consensus 113 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 186 (670)
++|+++++.. +-|...+..++..|...++.+++++ ...|+...+-.++..+...++..+|++.++++.+.
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--- 198 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--- 198 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh---
Confidence 9999999974 3356777788899999999998776 24566666644444454466676799999999985
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHH------------------------------------------------HH
Q 005905 187 VDPD-HITIGALMKACANAGQVDRAREVYK------------------------------------------------MI 217 (670)
Q Consensus 187 ~~pd-~~t~~~li~~~~~~g~~~~A~~~~~------------------------------------------------~m 217 (670)
.|+ ...+..+..+..+.|-...|.++.+ .+
T Consensus 199 -~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 -APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred -CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 454 4445555566655555444444433 22
Q ss_pred HHc--CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005905 218 HKY--NIKGTPEVY----TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291 (670)
Q Consensus 218 ~~~--~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~ 291 (670)
... ..++....| -=.+-++...|++.++++.|+.|...+.+....+-..+.++|...+++++|..+++.+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 221 001111111 11234555666777777777777766655444566667777777777777777777765432
Q ss_pred -----CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------------CCCH-HHHHHHHHHHHhCCChhHHHH
Q 005905 292 -----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-------------KPTV-STMNALITALCDGDQLPKTME 352 (670)
Q Consensus 292 -----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~-~~~~~li~~~~~~g~~~~A~~ 352 (670)
..++......|.-+|...+++++|..+++.+.+..+ .||- ..+..++..+...|+..+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 122333445666777777777777777777765211 1111 122334555666777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 353 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
.++++... -+-|......+...+...|.+.+|.+.++....
T Consensus 438 ~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~ 478 (822)
T PRK14574 438 KLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES 478 (822)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 77777654 234556666666667777777777777755444
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=2.2e-11 Score=119.37 Aligned_cols=303 Identities=16% Similarity=0.218 Sum_probs=238.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------------------------C
Q 005905 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS-----------------------------G 141 (670)
Q Consensus 91 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~-----------------------------g 141 (670)
.+++=|.|++.. ..|.+..+.-+|+.|...|++.+..+--.|+...+-. |
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 345667777654 5688999999999999999888887766666543322 1
Q ss_pred CHHH-HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005905 142 KVDA-MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220 (670)
Q Consensus 142 ~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 220 (670)
.+.+ .|+..+.+..+|.+||.+.++--..++|.++|++-... ..+.+..+||.+|.+-.-. ...++..+|...
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~--k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisq 267 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA--KGKVYREAFNGLIGASSYS----VGKKLVAEMISQ 267 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh--hheeeHHhhhhhhhHHHhh----ccHHHHHHHHHh
Confidence 2211 34456678899999999999999999999999998775 4577889999999765433 237889999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHH----HCC
Q 005905 221 NIKGTPEVYTIAINCCSQTGDWEF----ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA-AFEILQEAK----NQG 291 (670)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-A~~i~~~m~----~~~ 291 (670)
.+.||..|+|+++++.++.|+++. |++++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++. .+.
T Consensus 268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 999999999999999999998765 56788999999999999999999999999888744 333333332 222
Q ss_pred C----CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005905 292 I----SVGIISYSSLMGACSNAKNWQKALELYEHMKSIK----LKPT---VSTMNALITALCDGDQLPKTMEVLSDMKSL 360 (670)
Q Consensus 292 ~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 360 (670)
+ +.|...|.+.|..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-+..|+.|.-.
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 2356678888999999999999999877665321 1222 234566778888888999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005905 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400 (670)
Q Consensus 361 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 400 (670)
-+-|+..+...+++|..-.+.++-.-+++..++..|..-.
T Consensus 428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 7889999999999999999999999999999998884433
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.60 E-value=5.3e-11 Score=135.95 Aligned_cols=386 Identities=11% Similarity=0.044 Sum_probs=270.4
Q ss_pred HHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005905 67 FFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (670)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 143 (670)
...+....|+.++|++++.... +.+...+..+..++...|++++|..+|++.++.. +.+...+..+..++...|+.
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 5566777899999999998754 3456679999999999999999999999998863 34567778888999999999
Q ss_pred HHHHh-------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 005905 144 DAMFE-------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYK 215 (670)
Q Consensus 144 ~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~ 215 (670)
+++.+ ..+.+.. |..+..++...|+.++|+..++++.+. .|+ ...+..+..++...+..+.|.+.++
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~----~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR----APQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 88654 2234556 888999999999999999999999875 454 4455667778888999999999887
Q ss_pred HHHHcCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHHhcC
Q 005905 216 MIHKYNIKGTP------EVYTIAINCCS-----QTGDW---EFACSVYDDMTKK-GVIPDEV-FLS----ALIDFAGHAG 275 (670)
Q Consensus 216 ~m~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~p~~~-t~~----~li~~~~~~g 275 (670)
.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...|
T Consensus 175 ~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 175 DANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred hCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 6654 2211 11222233222 22334 7899999999864 2233321 111 1133456779
Q ss_pred ChHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCChhHHH
Q 005905 276 KVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITALCDGDQLPKTM 351 (670)
Q Consensus 276 ~~~~A~~i~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~ 351 (670)
++++|...|+.+.+.+.+ |+. ....+..+|...|++++|...|+++.+..... ....+..+..++...|++++|.
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 999999999999987632 332 22235778999999999999999987653211 1355677778899999999999
Q ss_pred HHHHHHHhCC-----------CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hH
Q 005905 352 EVLSDMKSLG-----------LCPNT---ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RY 415 (670)
Q Consensus 352 ~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~ 415 (670)
++++++.... -.|+. ..+..+...+...|+.++|..+++++.... +-+...+..+..++.. .+
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 9999998742 12342 345566778889999999999999988753 2334555555565543 67
Q ss_pred HHHHHhHHHhhhhcCCCccc--h-------hhhHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 005905 416 EKARTLNEHVLSFNSGRPQI--E-------NKWTSLALMVYREAIVAGTIPTVEVVSKV 465 (670)
Q Consensus 416 ~~a~~l~~a~~~~~~~~~~~--~-------~~~~~~A~~~~~~m~~~~~~P~~~~~~~l 465 (670)
++|....+....+.+..+.. . .+-..+|..+++++++ ..|+......+
T Consensus 410 ~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~ 466 (765)
T PRK10049 410 RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRL 466 (765)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 77777766555544432111 1 1112468889999987 57777655444
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.51 E-value=3.6e-10 Score=129.64 Aligned_cols=348 Identities=16% Similarity=0.118 Sum_probs=250.3
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH--hhhhhHHHHHHHhhhCC---CCCHHHHHHHHHH
Q 005905 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVC--KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSV 101 (670)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~ 101 (670)
+-+.+-..+++.++++-+.++.. +.|-+.. . ..+.. ...+...+|...++.+- +.+.....-+--.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~ 385 (987)
T PRK09782 315 VVGATLPVLLKEGQYDAAQKLLA------TLPANEM-L--EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQ 385 (987)
T ss_pred HHHHHHHHHHhccHHHHHHHHhc------CCCcchH-H--HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34445666778888886665522 2233333 2 22222 22244455555444442 2244444455555
Q ss_pred HHcCCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCCHH---HH----------------------------Hh
Q 005905 102 CASSKDSEGAFQVLRLVQEA-G-LKADCKLYTTLITTCAKSGKVD---AM----------------------------FE 148 (670)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~-g-~~pd~~~~~~li~~~~~~g~~~---~~----------------------------~~ 148 (670)
..+.|+.++|.++|+..... + ..++.....-|+..|.+.+.++ .+ +.
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 67788899999999887762 1 2234555667788887776521 11 00
Q ss_pred ----cCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 005905 149 ----NVKP--DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI 222 (670)
Q Consensus 149 ----~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 222 (670)
..++ +...|..+..++.. ++.++|+..|.+.... .|+......+..++...|++++|...|+.+...
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~----~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-- 538 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR----QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-- 538 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 1134 67788888888877 8999999988888764 577555444555667899999999999987654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHH
Q 005905 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302 (670)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~l 302 (670)
+|+...+..+..++.+.|++++|...|++..+.... +...+..+.......|++++|...+++..+.. |+...+..+
T Consensus 539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~L 615 (987)
T PRK09782 539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVAR 615 (987)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 444556677788899999999999999999887532 33344444445556799999999999998865 568889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 005905 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDD 381 (670)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 381 (670)
..++.+.|++++|...|++..+.. +.+...++.+...+...|+.++|+..|++..+. .| +...+..+..++...|+
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999998876 336778888999999999999999999999874 45 56677888889999999
Q ss_pred HHHHHHHHHHHHHCC
Q 005905 382 VEVGLMLLSQAKEDG 396 (670)
Q Consensus 382 ~~~a~~~~~~m~~~g 396 (670)
+++|...|++..+..
T Consensus 693 ~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 693 MAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999988753
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.51 E-value=9.3e-10 Score=123.72 Aligned_cols=360 Identities=11% Similarity=0.053 Sum_probs=255.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHHHHHHHHHHcCCCHHHH
Q 005905 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKDSEGA 111 (670)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~li~~~~~~g~~~~A 111 (670)
.+...|++++|+++|+++.+.. |.+..+...++..+...++.++|++.++.+. .|+...+-.++..+...++..+|
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence 4446688888888888888877 6665555556677777788888888887765 35545554444444445666568
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcC--CCCHH-----HH------HHHHHHH---H--hcC---CH
Q 005905 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV--KPDRV-----VF------NALITAC---G--QSG---AV 170 (670)
Q Consensus 112 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~--~~~~~-----~~------~~li~~~---~--~~g---~~ 170 (670)
+..++++.+.. +-+...+..++.+..+.|-...+.+.. .|+.. -+ ..+++.- . ... -.
T Consensus 189 L~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 88888888863 335666677777777777766554421 12111 11 1111110 0 111 24
Q ss_pred HHHHHHHHHHhhCCCCCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005905 171 DRAFDVLAEMNAEVHPVDPDH-ITI----GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~-~t~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (670)
+.|+.-++.+.... +-.|.. ..| .-.+-++...|++.++++.|+.+...+.+....+-.++.++|...+.+++|
T Consensus 268 d~ala~~~~l~~~~-~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 268 DKALADYQNLLTRW-GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHhhc-cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 56777777766542 222332 222 234567889999999999999999888765667889999999999999999
Q ss_pred HHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-------------CccH-HHHHHHHHHH
Q 005905 246 CSVYDDMTKKG-----VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-------------SVGI-ISYSSLMGAC 306 (670)
Q Consensus 246 ~~l~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~-------------~~~~-~~~~~li~~~ 306 (670)
..+|+++.... ..++......|.-+|..++++++|..+++.+.+... .||- ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999997643 123444457888899999999999999999987321 1222 3445567788
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 005905 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVG 385 (670)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 385 (670)
...|++.+|++.++++.... +-|......+...+...|.+.+|.+.++..... .|+ ..+......++...+++++|
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999998776 458999999999999999999999999776654 554 56667778888899999999
Q ss_pred HHHHHHHHHCCCCCCHH
Q 005905 386 LMLLSQAKEDGVIPNLV 402 (670)
Q Consensus 386 ~~~~~~m~~~g~~p~~~ 402 (670)
..+.+.+.... |+..
T Consensus 504 ~~~~~~l~~~~--Pe~~ 518 (822)
T PRK14574 504 ELLTDDVISRS--PEDI 518 (822)
T ss_pred HHHHHHHHhhC--CCch
Confidence 99998887743 5544
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.47 E-value=8.6e-10 Score=118.94 Aligned_cols=200 Identities=12% Similarity=0.093 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh----------
Q 005905 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIPDEVFLSALIDFAGH---------- 273 (670)
Q Consensus 205 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~---------- 273 (670)
+...+|...++.....+ ..++.+++.+-..|.+...+..|.+-|....+.- ..+|.....+|-..|..
T Consensus 544 ~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e 622 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE 622 (1018)
T ss_pred cCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence 44555566665555543 4455666666666666666666666555554332 22455555555554432
Q ss_pred --cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHH
Q 005905 274 --AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTM 351 (670)
Q Consensus 274 --~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 351 (670)
.+..++|+++|.++.+.. +.|...-|-+.-.++.+|++.+|..||.++++... .+..+|-.+.++|..+|++..|+
T Consensus 623 k~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHH
Confidence 234567777777777765 56677777777778888888888888888776542 24456777778888888888888
Q ss_pred HHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005905 352 EVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCI 407 (670)
Q Consensus 352 ~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 407 (670)
++|+...+ ..-.-+......|..++...|.+.+|.+.+-........-....||..
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 88877554 333445666777777788888888888777666654433333444433
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=7.7e-11 Score=116.11 Aligned_cols=203 Identities=15% Similarity=0.218 Sum_probs=151.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005905 204 AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI 283 (670)
Q Consensus 204 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i 283 (670)
.|++++|.+.|++....+-......||+=+ .+-..|++++|++.|-++...=. -+..++..+...|....+..+|.++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 477888888888887655333333344333 35567888888888877643211 2556777777888888888888888
Q ss_pred HHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 005905 284 LQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC 363 (670)
Q Consensus 284 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 363 (670)
+.+.... ++.|+.+...|.+.|-+.|+-..|.+.+-+--.. ++-|..+..-|..-|....-+++|+..|++..- ++
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 8776544 5778889999999999999999998876553322 245777878888888888899999999998654 68
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 364 PNTITYSILLVAC-ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 364 p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
|+..-|..++..| .+.|++..|+.+++..... ++-|......|+..++.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcc
Confidence 9999999888766 4679999999999876543 56777888888888765
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.45 E-value=5.3e-11 Score=123.55 Aligned_cols=278 Identities=12% Similarity=0.083 Sum_probs=205.0
Q ss_pred hHHHHHHHhhhCC--CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHH----HH
Q 005905 76 AIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAG--LKADCKLYTTLITTCAKSGKVD----AM 146 (670)
Q Consensus 76 ~~~~A~~~~~~~~--~~~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~li~~~~~~g~~~----~~ 146 (670)
+..+|+..|...+ .+| ......+.++|...+++++|.++|+.+.+.. ..-+..+|++.+--+-+.=.+- +.
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4678899998865 233 3455667799999999999999999998753 1236678888776443322211 12
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 005905 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225 (670)
Q Consensus 147 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 225 (670)
.+.-+-...+|.++.++|.-.++.+.|++.|++..+ +.| ..++|+.+.+-+.....+|.|...|+..+..+ +.+
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ----ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rh 488 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ----LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRH 488 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc----cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chh
Confidence 333455688999999999999999999999999876 466 67888888888888899999999998877654 223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 005905 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305 (670)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~ 305 (670)
-.+|.-|.-.|.+.++++.|+-.|++..+.+.. +.+....+...+-+.|+.++|+++++++...... |+..----+..
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~i 566 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASI 566 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence 344555777888999999999999888887755 6777777778888888888888888888776633 33333344555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 005905 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG 361 (670)
Q Consensus 306 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 361 (670)
+...+++++|...++++++.- +.+...|-.+...|.+.|+.+.|+.-|..+.+..
T Consensus 567 l~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 667788888888888887763 2245566677778888888888888888777643
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.42 E-value=3.2e-09 Score=113.93 Aligned_cols=361 Identities=14% Similarity=0.123 Sum_probs=267.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhh---CCCCCHHHHHHHHHHHHc
Q 005905 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKL---VPNPTLSTFNMLMSVCAS 104 (670)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~y~~li~~~~~ 104 (670)
.+..-|.+-..|++++|..++.++.+.. |.+..-+..+...+..+|+.+.+...+-. +.+.|...|-.+.....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 3344455556799999999999999998 77777777789999999999999987643 345677899999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhc-------CCCCHH-----HHHHHHHHHHhcCCHHH
Q 005905 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN-------VKPDRV-----VFNALITACGQSGAVDR 172 (670)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~-------~~~~~~-----~~~~li~~~~~~g~~~~ 172 (670)
.|++++|.-.|.+.++.. +++...+---+..|-+.|+...+.++ .+|... .--.++..|...++-+.
T Consensus 220 ~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred cccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999874 44555555567788899998876552 222222 22234566777788899
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---------------------------
Q 005905 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--------------------------- 225 (670)
Q Consensus 173 A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------------------- 225 (670)
|.+.++...... +-..+...++.++..+.+...++.|......+..+...+|
T Consensus 299 a~~~le~~~s~~-~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 299 AAKALEGALSKE-KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHhhc-cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 999998887632 2344556788888889999999999888877766222222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHH
Q 005905 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303 (670)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li 303 (670)
..++ -++-++.+....+....+.....+.. +.-+...|.-+.+++...|.+.+|+.++..+......-+..+|--+.
T Consensus 378 l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 2221 12233444444455555555555555 44455688899999999999999999999999887666788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHH
Q 005905 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK--------SLGLCPNTITYSILLVA 375 (670)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~ll~a 375 (670)
.+|...|.+++|.+.|+.+.... +-+...--+|-..+-+.|+.++|++.+..|. ..+..|+..........
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~ 535 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI 535 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence 99999999999999999998764 2245555667778899999999999999964 23455666666666677
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 005905 376 CERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~~ 394 (670)
+...|+.++-..+-..|+.
T Consensus 536 l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 536 LFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHhhhHHHHHHHHHHHHH
Confidence 8888998876666555543
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.41 E-value=6.9e-09 Score=112.17 Aligned_cols=386 Identities=12% Similarity=0.079 Sum_probs=234.7
Q ss_pred CCchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCC--HHHHHH
Q 005905 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT--LSTFNM 97 (670)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~--~~~y~~ 97 (670)
.++..-...-|.+.-.|++..+..+.+.+...... +.-..-+..+.+.+-..|+++.|..+|.... .+| +..+--
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence 33344444445556788888888888888765421 1112224456777778889999988876542 333 334455
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHh-------------------------
Q 005905 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG----KVDAMFE------------------------- 148 (670)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g----~~~~~~~------------------------- 148 (670)
+...+.+.|+++.+...|+..... .+.+..|...|-..|+..+ ..+.+++
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 678888889999998888888876 3445566667766676654 1222222
Q ss_pred --------------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCCCH------HHHHHHHHHH
Q 005905 149 --------------------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH-PVDPDH------ITIGALMKAC 201 (670)
Q Consensus 149 --------------------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~~~pd~------~t~~~li~~~ 201 (670)
+..+-....|.+...+...|++++|...|.+....-. ...+|. .+--.+....
T Consensus 427 ~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 427 TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 1123444455555555555566666655555443200 011111 1111223333
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005905 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAF 281 (670)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 281 (670)
-..++.+.|.++|+.+.+.. +.-+..|--+.-.....+...+|...+.+....+- .+...++.+-..+.+...+..|.
T Consensus 507 E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccc
Confidence 34455556666665555532 22222333333222223455666666666654432 13334444444566666666666
Q ss_pred HHHHHHHHCC-CCccHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChh
Q 005905 282 EILQEAKNQG-ISVGIISYSSLMGACSN------------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348 (670)
Q Consensus 282 ~i~~~m~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 348 (670)
+-|....+.- ..+|..+.-+|.+.|.. .+..++|.++|.++.... +.|...-|-+...++..|++.
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~ 663 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFS 663 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCch
Confidence 6555554432 23566666666665532 346789999999998876 458888899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 005905 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 349 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~r 413 (670)
+|..+|.+.++.. .-+..+|..+..+|...|++..|+++|+...+ ..-.-+..+..+|-.++-+
T Consensus 664 ~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 664 EARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred HHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 9999999999864 23556788889999999999999999977665 4545566667777666543
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.39 E-value=2.6e-12 Score=129.22 Aligned_cols=255 Identities=16% Similarity=0.139 Sum_probs=68.0
Q ss_pred HHHHHhhhhhHHHHHHHhhhC-----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005905 67 FFNVCKSQKAIKEAFRFFKLV-----PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSG 141 (670)
Q Consensus 67 l~~~~~~~~~~~~A~~~~~~~-----~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g 141 (670)
+...+...|++++|+++++.. ++.|...|..+...+...++++.|+..++++...+.. +...+..++.
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~------ 86 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQ------ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc------
Confidence 355566667777777777422 1224444555555666677777777777777765421 2222333322
Q ss_pred CHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 005905 142 KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYN 221 (670)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 221 (670)
. ...+++++|.+++...-+. .++...+..++..+...++++++.++++.+....
T Consensus 87 ---------------------l-~~~~~~~~A~~~~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~ 140 (280)
T PF13429_consen 87 ---------------------L-LQDGDPEEALKLAEKAYER----DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELP 140 (280)
T ss_dssp ---------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T
T ss_pred ---------------------c-ccccccccccccccccccc----ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 2 3444455555555443322 2333444445555555555555555555544321
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHH
Q 005905 222 -IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS 300 (670)
Q Consensus 222 -~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~ 300 (670)
.+.+...|..+...+.+.|+.++|++.|++..+..+. |......++..+...|+.+++.+++....+.. +.|...+.
T Consensus 141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~ 218 (280)
T PF13429_consen 141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWD 218 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHH
Confidence 2334445555555555555555555555555554322 34445555555555555555555555544432 33334445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
.+..+|...|+.++|...|++..+.. +.|......+..++...|+.++|.++.++.
T Consensus 219 ~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 219 ALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred HHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 55555555555555555555555432 224555555555555555555555555443
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=1.8e-09 Score=113.79 Aligned_cols=283 Identities=9% Similarity=0.023 Sum_probs=188.6
Q ss_pred hhhHHHHHHHhhhCCCC--CHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcC
Q 005905 74 QKAIKEAFRFFKLVPNP--TLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV 150 (670)
Q Consensus 74 ~~~~~~A~~~~~~~~~~--~~~-~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~ 150 (670)
.|+++.|.+.+...+.. +.. .|-....+..+.|+++.|...|.++.+. .|+......+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l----------------- 157 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEI----------------- 157 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHH-----------------
Confidence 58888888888766432 223 3333345557889999999999998874 4554322211
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----
Q 005905 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP---- 226 (670)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---- 226 (670)
.....+...|+++.|...++++.+.. +-+...+..+...|.+.|++++|.+++..+.+....++.
T Consensus 158 --------~~a~l~l~~g~~~~Al~~l~~~~~~~---P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~ 226 (398)
T PRK10747 158 --------TRVRIQLARNENHAARHGVDKLLEVA---PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAM 226 (398)
T ss_pred --------HHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 11344566777778888888777642 223456666777788888888888888888776543222
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHH
Q 005905 227 ---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303 (670)
Q Consensus 227 ---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li 303 (670)
.+|..++.......+.+...++++.+.+.- +.+......+...+...|+.++|.+++....+. .++... .++
T Consensus 227 l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l 301 (398)
T PRK10747 227 LEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLL 301 (398)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHH
Confidence 234444544445555666666666654432 336667777788888888888888888887774 334321 123
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 005905 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVE 383 (670)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 383 (670)
.+....++.+++.+..+...+.. +-|...+.++...|.+.+++++|.+.|+...+. .|+..+|..+..++.+.|+.+
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHH
Confidence 33345578888888888777654 235666777788888888888888888888763 688888888888888888888
Q ss_pred HHHHHHHHHHH
Q 005905 384 VGLMLLSQAKE 394 (670)
Q Consensus 384 ~a~~~~~~m~~ 394 (670)
+|.+++++...
T Consensus 379 ~A~~~~~~~l~ 389 (398)
T PRK10747 379 EAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHh
Confidence 88888876654
No 34
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=2.6e-09 Score=101.72 Aligned_cols=232 Identities=16% Similarity=0.169 Sum_probs=118.2
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC-CCCH------HHHHH
Q 005905 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP-NPTL------STFNM 97 (670)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~------~~y~~ 97 (670)
++.|+...|.|+ +.+.+.|+++|-+|.+.+ |.+...|..+..++.+.|.++.|+++.+.+. .||. ...-.
T Consensus 36 sr~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~q 112 (389)
T COG2956 36 SRDYVKGLNFLL-SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQ 112 (389)
T ss_pred cHHHHhHHHHHh-hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 445666666665 456677777777777655 5555566666666666667777766665432 3332 12233
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVL 177 (670)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 177 (670)
|..-|...|-++.|..+|..+.+.|.. - ....-.|+..|-...++++|+++-
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~ef-a---------------------------~~AlqqLl~IYQ~treW~KAId~A 164 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEF-A---------------------------EGALQQLLNIYQATREWEKAIDVA 164 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhh-h---------------------------HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444555566666666666655543210 0 111223444455555555555555
Q ss_pred HHHhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 178 AEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253 (670)
Q Consensus 178 ~~m~~~~~~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 253 (670)
+++.+.+ -.+.. ..|.-+...+....+++.|..++++..+.+ +.++.+--.+-+.+...|++..|.+.++...
T Consensus 165 ~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 165 ERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 5544321 11110 112223333333455555555555555544 2233333344455555566666666665555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005905 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 254 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~ 290 (670)
+.+..--..+...|..+|.+.|+.+++...+..+.+.
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 5544333344555555555555555555555555544
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.1e-08 Score=99.99 Aligned_cols=233 Identities=16% Similarity=0.050 Sum_probs=160.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCCHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD-RAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~-~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
+...-+....+.-...++++|..+|+++.+..+----|..+|+.++-.-.....+. .|..++ .+. +-.+.|...
T Consensus 261 ~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~id----KyR~ETCCi 335 (559)
T KOG1155|consen 261 SMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NID----KYRPETCCI 335 (559)
T ss_pred cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-Hhc----cCCccceee
Confidence 33333333344455667888888888887763211224566666653322211111 122221 111 223466777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~ 311 (670)
+.+-|+-.++.++|...|+..++.+.. ....|+.+-.-|....+...|.+-++..++.+ +.|-..|-.|.++|.-.+.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcc
Confidence 778888888888888888888877654 55677777888888888888888888888775 6677888888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391 (670)
Q Consensus 312 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 391 (670)
..-|+-.|++..+.. +-|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...+.+.++.++|.++|..
T Consensus 414 h~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 414 HFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred hHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 888888888877665 3478888888888888888888888888887755 34667788888888888888888888876
Q ss_pred HHH
Q 005905 392 AKE 394 (670)
Q Consensus 392 m~~ 394 (670)
-++
T Consensus 492 ~v~ 494 (559)
T KOG1155|consen 492 YVE 494 (559)
T ss_pred HHH
Confidence 654
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.35 E-value=4.6e-09 Score=110.75 Aligned_cols=267 Identities=13% Similarity=0.081 Sum_probs=201.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 005905 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184 (670)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 184 (670)
.|+++.|.+.+....+.. ++...+ .++ ...+..+.|+++.|...|.++.+.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~-~ll-------------------------aA~aA~~~g~~~~A~~~l~~A~~~- 147 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVN-YLL-------------------------AAEAAQQRGDEARANQHLERAAEL- 147 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHH-HHH-------------------------HHHHHHHCCCHHHHHHHHHHHHhc-
Confidence 699999998877655542 222222 222 123346788999999999999764
Q ss_pred CCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-
Q 005905 185 HPVDPDHITIG--ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE- 261 (670)
Q Consensus 185 ~~~~pd~~t~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~- 261 (670)
.|+...+. .....+...|+++.|...++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+.+..++.
T Consensus 148 ---~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 148 ---ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred ---CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 56654333 33567889999999999999998876 677889999999999999999999999999988765333
Q ss_pred ------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005905 262 ------VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335 (670)
Q Consensus 262 ------~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 335 (670)
.+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. .||....
T Consensus 224 ~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~- 299 (398)
T PRK10747 224 RAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV- 299 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH-
Confidence 24445555555566667777777776443 2557888889999999999999999999988874 4455322
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 336 ALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 336 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
++.+....++.+++++..+...+. .|+ ...+..+-..|.+.+++++|.+.|+.+.+. .|+...|..+..++.+
T Consensus 300 -~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 300 -LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDR 373 (398)
T ss_pred -HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Confidence 344555669999999999998875 454 556778888999999999999999998875 5999888877777554
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.35 E-value=9.5e-09 Score=97.92 Aligned_cols=268 Identities=18% Similarity=0.205 Sum_probs=203.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 005905 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184 (670)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 184 (670)
+.+.++|..+|-+|.+. |..||. +--+|.+.|-+.|..++|+.+.+.+...
T Consensus 48 s~Q~dKAvdlF~e~l~~----d~~t~e------------------------~~ltLGnLfRsRGEvDRAIRiHQ~L~~s- 98 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE----DPETFE------------------------AHLTLGNLFRSRGEVDRAIRIHQTLLES- 98 (389)
T ss_pred hcCcchHHHHHHHHHhc----CchhhH------------------------HHHHHHHHHHhcchHHHHHHHHHHHhcC-
Confidence 46788999999999873 333332 2335677788889999999999988764
Q ss_pred CCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005905 185 HPVDPDH------ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258 (670)
Q Consensus 185 ~~~~pd~------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 258 (670)
||. ...-.+..-|...|-+|.|+.+|..+.+.+ ..-......|+..|-+..+|++|+++-+++.+.+..
T Consensus 99 ----pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 99 ----PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 442 223345667889999999999999998755 334567888999999999999999999999988766
Q ss_pred CCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005905 259 PDEV----FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334 (670)
Q Consensus 259 p~~~----t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 334 (670)
+..+ .|.-+...+....+.+.|...+....+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.+..--..+.
T Consensus 174 ~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 174 TYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHH
Confidence 5543 56777777777889999999999998876 344555557788999999999999999999987654445677
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411 (670)
Q Consensus 335 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (670)
..|..+|.+.|+.++.+..+.++.+. .+....-..+..--....-.+.|..++.+-... .|+...+..+|+.-
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 88999999999999999999999885 333333333434333444456677666555443 59999999999863
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.35 E-value=4.4e-09 Score=111.52 Aligned_cols=290 Identities=10% Similarity=-0.003 Sum_probs=165.1
Q ss_pred hhhhHHHHHHHhhhCC--CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhc
Q 005905 73 SQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN 149 (670)
Q Consensus 73 ~~~~~~~A~~~~~~~~--~~~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~ 149 (670)
..|+++.|.+.+.... .|+ ...|-....+....|+++.|...+.+..+.. |+....
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~------------------- 154 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNIL------------------- 154 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchH-------------------
Confidence 4577777777776553 233 2333344566777788888888888876542 332110
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005905 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229 (670)
Q Consensus 150 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 229 (670)
..-.....+...|+++.|...++.+.+.. +-+...+..+...+...|+++.|.+.+..+.+.+..+ ...+
T Consensus 155 ------~~~~~a~l~l~~~~~~~Al~~l~~l~~~~---P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~ 224 (409)
T TIGR00540 155 ------VEIARTRILLAQNELHAARHGVDKLLEMA---PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEF 224 (409)
T ss_pred ------HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHH
Confidence 01112344555667777777777776641 2234456666677777777777777777777665332 2222
Q ss_pred H-HHHHHH---HhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHH-HH
Q 005905 230 T-IAINCC---SQTGDWEFACSVYDDMTKKGVI---PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY-SS 301 (670)
Q Consensus 230 ~-~li~~~---~~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~-~~ 301 (670)
. .-..++ ...+..+++.+.+..+.+.... .+...+..+...+...|+.++|.+++++..+.........+ ..
T Consensus 225 ~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l 304 (409)
T TIGR00540 225 ADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLC 304 (409)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHH
Confidence 1 111111 2222223333344444433221 25666667777777777777777777777765422211111 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005905 302 LMGACSNAKNWQKALELYEHMKSIKLKPTV--STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379 (670)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 379 (670)
..-.....++.+.+.+.++...+.. +-|. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.
T Consensus 305 ~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 305 LPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 1112233466677777777666542 1233 455577777777888888888777433333467777777777777778
Q ss_pred CCHHHHHHHHHHHHH
Q 005905 380 DDVEVGLMLLSQAKE 394 (670)
Q Consensus 380 g~~~~a~~~~~~m~~ 394 (670)
|+.++|.+++++...
T Consensus 384 g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 384 GDKAEAAAMRQDSLG 398 (409)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888777776543
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=3.8e-09 Score=104.41 Aligned_cols=205 Identities=18% Similarity=0.190 Sum_probs=166.5
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005905 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL---MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241 (670)
Q Consensus 165 ~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 241 (670)
..+|++++|.+.|.+.... |...-.+| .-.+-..|++++|++.|-++... +..+..+...+.+.|-...+
T Consensus 501 f~ngd~dka~~~ykeal~n------dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led 573 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNN------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLED 573 (840)
T ss_pred eecCcHHHHHHHHHHHHcC------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhC
Confidence 3478999999999998764 33332233 33567889999999999877553 23456788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
...|++++.+.... ++-|...++-|.+.|-+.|+-.+|++.+-+--+- ++.+..+...|...|....-+++|...|++
T Consensus 574 ~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 574 PAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999776544 3447889999999999999999999988766544 577888999999999999999999999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHH-hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005905 322 MKSIKLKPTVSTMNALITALC-DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381 (670)
Q Consensus 322 m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 381 (670)
..-. +|+..-|..||..|. +.|++.+|++++++..+. ++-|......|++.|...|.
T Consensus 652 aali--qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 652 AALI--QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHhc--CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 6543 899999999987665 689999999999998775 77788888888888887775
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.32 E-value=1.3e-11 Score=124.10 Aligned_cols=262 Identities=16% Similarity=0.145 Sum_probs=114.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVL 177 (670)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 177 (670)
+...+.+.|++++|+++++......-+|+ |...|..+...+...++.+.|...|
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~--------------------------~~~~~~~~a~La~~~~~~~~A~~ay 67 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPD--------------------------DPEYWRLLADLAWSLGDYDEAIEAY 67 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc--------------------------ccccccccccccccccccccccccc
Confidence 35566677777777777754433321222 2223444445556678899999999
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 005905 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG- 256 (670)
Q Consensus 178 ~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 256 (670)
+++...+. -+...+..++.. ...+++++|.+++....+.. +++..+..++..+.+.++++++..+++.+....
T Consensus 68 ~~l~~~~~---~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 141 (280)
T PF13429_consen 68 EKLLASDK---ANPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA 141 (280)
T ss_dssp --------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-
T ss_pred cccccccc---cccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC
Confidence 99987531 234456666666 78999999999998776543 456778889999999999999999999987543
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005905 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336 (670)
Q Consensus 257 ~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 336 (670)
...+...|..+...+.+.|+.++|...+++..+.. +-|..+.+.++..+...|+.+++.+++....+.. +.|...|..
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~ 219 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDA 219 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHH
Confidence 34577888899999999999999999999999875 4467889999999999999999999988877653 446667889
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 337 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+..+|...|+.++|+..|++.... .+.|..+...+..++...|+.++|.++..+..+
T Consensus 220 la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 220 LAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT-----------------
T ss_pred HHHHhccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 999999999999999999998874 244777888899999999999999999877643
No 41
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=9.5e-12 Score=88.31 Aligned_cols=50 Identities=30% Similarity=0.639 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005905 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378 (670)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 378 (670)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777754
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.25 E-value=3e-08 Score=105.13 Aligned_cols=281 Identities=12% Similarity=0.026 Sum_probs=196.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 005905 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAE 183 (670)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 183 (670)
..|+++.|.+.+.+..+. .|+.. ..+-....++.+.|+++.|.+.|.+..+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~--------------------------~~~llaA~aa~~~g~~~~A~~~l~~a~~~ 147 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPV--------------------------LNLIKAAEAAQQRGDEARANQHLEEAAEL 147 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCH--------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 467888888877665553 23321 12223345667889999999999998764
Q ss_pred CCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005905 184 VHPVDPDHI--TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261 (670)
Q Consensus 184 ~~~~~pd~~--t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 261 (670)
.|+.. ...+....+...|+++.|...++.+.+.. +.++.++..+...|.+.|++++|.+++..+.+.++.+..
T Consensus 148 ----~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 148 ----AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred ----CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 35542 33345778889999999999999999976 667889999999999999999999999999998765333
Q ss_pred HHHHHHHHHH---HhcCChHHHHHHHHHHHHCCC---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--
Q 005905 262 VFLSALIDFA---GHAGKVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST-- 333 (670)
Q Consensus 262 ~t~~~li~~~---~~~g~~~~A~~i~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-- 333 (670)
.....-..++ ...+..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. ||...
T Consensus 223 ~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~ 300 (409)
T TIGR00540 223 EFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAIS 300 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccch
Confidence 2212222222 222333334445555554431 2378889999999999999999999999998764 34332
Q ss_pred -HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 334 -MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI---TYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409 (670)
Q Consensus 334 -~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 409 (670)
...........++.+.+++.++...+. .|+.. ...++-..|.+.|++++|.+.|+........|+...+..+..
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ 378 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD 378 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence 122223334457888899999887764 45544 455778889999999999999996555556799988887777
Q ss_pred HHHh--hHHHHHHh
Q 005905 410 MCSR--RYEKARTL 421 (670)
Q Consensus 410 ~~~r--~~~~a~~l 421 (670)
.+-+ ..++|.++
T Consensus 379 ll~~~g~~~~A~~~ 392 (409)
T TIGR00540 379 AFDQAGDKAEAAAM 392 (409)
T ss_pred HHHHcCCHHHHHHH
Confidence 7554 34444443
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=5.5e-08 Score=97.07 Aligned_cols=217 Identities=12% Similarity=0.062 Sum_probs=149.0
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHH----HHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 101 VCASSKDSEGAFQVLRLVQEAGL--KADCKLYTTLITTCAKSGKVDA----MFENVKPDRVVFNALITACGQSGAVDRAF 174 (670)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~--~pd~~~~~~li~~~~~~g~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 174 (670)
+.-...++++|+.+|+++.+... --|..+|+.++-.-..+.++.- ++..-+--..|...+.+-|+-.++.++|.
T Consensus 271 ~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv 350 (559)
T KOG1155|consen 271 ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAV 350 (559)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHH
Confidence 34456788888888888887742 1256677776644333322221 22222223445556666777777788888
Q ss_pred HHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 175 DVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253 (670)
Q Consensus 175 ~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 253 (670)
..|++..+- .|. ...|+.+.+-|....+...|.+-|+..++.+ +.|-..|-.|..+|.-.+.+.-|+-.|++..
T Consensus 351 ~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~ 425 (559)
T KOG1155|consen 351 MYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL 425 (559)
T ss_pred HHHHHHHhc----CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH
Confidence 888887764 333 4566677777888888888888888777765 5667778888888888888888888887777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 254 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
+..+. |...|.+|.++|.+.++.++|.+.|......| ..+...+..|...|-+.++.++|...|++-.+
T Consensus 426 ~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 426 ELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 66433 77778888888888888888888888777766 44557777788888888888888777776543
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=4.4e-08 Score=98.28 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=51.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCC-HHHHHHHHHHHHcCCCHHH
Q 005905 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEG 110 (670)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~y~~li~~~~~~g~~~~ 110 (670)
.+-++|.+++|++.|.+.++.. |..++++......+...|++++..+.-.... .|+ +..+.--.+++-..|++++
T Consensus 124 ~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~e 201 (606)
T KOG0547|consen 124 KFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDE 201 (606)
T ss_pred hhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHH
Confidence 3347899999999999999876 6656777767777888899888777654432 232 2233333445555555555
Q ss_pred HH
Q 005905 111 AF 112 (670)
Q Consensus 111 A~ 112 (670)
|+
T Consensus 202 al 203 (606)
T KOG0547|consen 202 AL 203 (606)
T ss_pred HH
Confidence 43
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.23 E-value=1e-08 Score=99.65 Aligned_cols=195 Identities=14% Similarity=0.066 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005905 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274 (670)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 274 (670)
..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.... +...+..+...+...
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~ 112 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQ 112 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHc
Confidence 333344444444444444444443322 223334444444444444444444444444433221 223333444444444
Q ss_pred CChHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 005905 275 GKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353 (670)
Q Consensus 275 g~~~~A~~i~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 353 (670)
|++++|.+.+....+... ......+..+...|...|++++|...|++..+.. +.+...+..+...+...|++++|...
T Consensus 113 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 113 GKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred ccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444443211 1122334445555556666666666666555443 12344555556666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393 (670)
Q Consensus 354 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 393 (670)
+++.... .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 192 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 192 LERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6665554 23344444455555556666666666555443
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=4.7e-09 Score=109.39 Aligned_cols=276 Identities=12% Similarity=0.051 Sum_probs=217.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC------CCCHHHHHHHHHHHHcCCCHHHHH
Q 005905 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP------NPTLSTFNMLMSVCASSKDSEGAF 112 (670)
Q Consensus 39 g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~y~~li~~~~~~g~~~~A~ 112 (670)
=+..+|+.+|+.+...- +....+...+.++|...+++++|.++|+.+. -.+...|.+.+--+-+. -++
T Consensus 333 y~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~L 406 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VAL 406 (638)
T ss_pred HHHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHH
Confidence 36778999999955443 5666888889999999999999999998764 24677888887554321 222
Q ss_pred HHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 005905 113 QVL-RLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNAEV 184 (670)
Q Consensus 113 ~~~-~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 184 (670)
..+ +++.... +-.+.+|.++-++|.-.++.+.+.+ .+.| ...+|+.+..-+.....+|.|...|+....
T Consensus 407 s~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 407 SYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 222 3344432 4467899999999999999998665 3445 678999999999999999999999998864
Q ss_pred CCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005905 185 HPVDPDHITIG---ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261 (670)
Q Consensus 185 ~~~~pd~~t~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 261 (670)
.|...|+ -+...|.+.++++.|+-.|+...+.+ +.+.+....+...+-+.|+.++|+.+|++....+.+ |.
T Consensus 484 ----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~ 557 (638)
T KOG1126|consen 484 ----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NP 557 (638)
T ss_pred ----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cc
Confidence 3434555 45678999999999999999999877 667778888888999999999999999999887765 55
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 005905 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT 330 (670)
Q Consensus 262 ~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 330 (670)
..---.+..+...+++++|+..++++++.- +-+..++..+...|-+.|+.+.|..-|.-+.+.++++.
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 444455666778899999999999998863 55677888999999999999999999998887655443
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.22 E-value=1.2e-07 Score=102.01 Aligned_cols=314 Identities=14% Similarity=0.102 Sum_probs=236.8
Q ss_pred hhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH---
Q 005905 73 SQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM--- 146 (670)
Q Consensus 73 ~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~--- 146 (670)
-.|++++|.+++.++. +.+...|-+|...|-..|+.+++...+-..-.. .+-|...|..+.......|.++.+
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3599999999998764 457788999999999999999998766433332 344678899999999999988763
Q ss_pred ----HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005905 147 ----FENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-----ITIGALMKACANAGQVDRAREVYKMI 217 (670)
Q Consensus 147 ----~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~-----~t~~~li~~~~~~g~~~~A~~~~~~m 217 (670)
...-+++...+---+..|-+.|+...|+..|.++.... +|.. .+.-.+++.+...++-+.|.+.++..
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---PPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33445565555566788999999999999999998752 2222 22234566777788889999988776
Q ss_pred HHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHH
Q 005905 218 HKY-NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---------------------------VIPDEVFLSALID 269 (670)
Q Consensus 218 ~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------------------------~~p~~~t~~~li~ 269 (670)
... +-..+...++.++..|.+...++.|......+.... +.++... ..+.-
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~i 385 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMI 385 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhh
Confidence 652 223455678999999999999999999988887622 1222222 12333
Q ss_pred HHHhcCChHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 005905 270 FAGHAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347 (670)
Q Consensus 270 ~~~~~g~~~~A~~i~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 347 (670)
+..+....+....+...+.+.. ..-++..|.-+..+|...|++.+|..+|..+......-+...|--+..+|...|.+
T Consensus 386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~ 465 (895)
T KOG2076|consen 386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY 465 (895)
T ss_pred hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence 4455666666666667677666 34456789999999999999999999999999876666788999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 348 PKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAK 393 (670)
Q Consensus 348 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 393 (670)
++|++.|+..... .|+. ..-..|-..+.+.|+.++|.+.+..+.
T Consensus 466 e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999874 5543 334455566789999999999998854
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=1e-08 Score=99.59 Aligned_cols=202 Identities=14% Similarity=0.082 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
.....+..+...|...|++++|...|++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 104 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD---PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNN 104 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 345677888899999999999999999998752 3346677888889999999999999999998875 556778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g 310 (670)
+...|...|++++|...|++.......+ ....+..+..++...|++++|...+.+..+.. +.+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 9999999999999999999998753222 34567778888999999999999999998865 445678888999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 311 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
++++|...+++..+.. +.+...+..+...+...|+.++|..+++.+..
T Consensus 184 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 184 QYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999988763 45677777888889999999999999888765
No 49
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=3.5e-11 Score=85.36 Aligned_cols=50 Identities=28% Similarity=0.468 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005905 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAK 139 (670)
Q Consensus 90 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~ 139 (670)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999875
No 50
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.11 E-value=1.5e-05 Score=83.19 Aligned_cols=352 Identities=12% Similarity=0.073 Sum_probs=174.2
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhh---hCCCCCHHHHHHHHHHH
Q 005905 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK---LVPNPTLSTFNMLMSVC 102 (670)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~y~~li~~~ 102 (670)
+..+..|.+-+..-..++|+.++.+..+-= |.+..+. -++.+...++.|..++. +..+.+...|-+....=
T Consensus 377 P~sv~LWKaAVelE~~~darilL~rAvecc--p~s~dLw----lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LE 450 (913)
T KOG0495|consen 377 PRSVRLWKAAVELEEPEDARILLERAVECC--PQSMDLW----LALARLETYENAKKVLNKAREIIPTDREIWITAAKLE 450 (913)
T ss_pred CchHHHHHHHHhccChHHHHHHHHHHHHhc--cchHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHH
Confidence 345677888888888888888888887653 4443322 23444556667766654 34456777777776666
Q ss_pred HcCCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCCHHHH---Hh-----cC--CCCHHHHHHHHHHHHhcC
Q 005905 103 ASSKDSEGAFQVLRL----VQEAGLKADCKLYTTLITTCAKSGKVDAM---FE-----NV--KPDRVVFNALITACGQSG 168 (670)
Q Consensus 103 ~~~g~~~~A~~~~~~----m~~~g~~pd~~~~~~li~~~~~~g~~~~~---~~-----~~--~~~~~~~~~li~~~~~~g 168 (670)
-.+|+.+....+.++ +...|+..+...|-.=...|-..|.+-.. .. ++ .--..+|+.--..|.+.+
T Consensus 451 E~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~ 530 (913)
T KOG0495|consen 451 EANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRP 530 (913)
T ss_pred HhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcc
Confidence 777888877777654 34456666665555444455444443210 00 11 112345555555555555
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 169 ~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
.++-|..+|....+. ...+...|......=-..|..+.-..+|++....- +-....|-....-+-..||...|..+
T Consensus 531 ~~~carAVya~alqv---fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 531 AIECARAVYAHALQV---FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred hHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 555555555555442 12223334333333334445555555555444431 22333444444444444555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 328 (670)
+.+..+.... +...|-.-+..-.....++.|..+|.+.... .|+..+|.--+..---.++.++|.+++++..+. -
T Consensus 607 l~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--f 681 (913)
T KOG0495|consen 607 LDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--F 681 (913)
T ss_pred HHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--C
Confidence 5555444332 3444444444444555555555555544432 333444444444444444555555555444432 2
Q ss_pred CC-HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 329 PT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS-ILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 329 p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
|+ ...|-.+-+.+-+.++.+.|.+.|..-.+ ..|+.+-.. .+...=.+.|.+-.|..+|+..+-
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 22 23344444444445555555544443322 233333222 222223344445555555544443
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.10 E-value=7.6e-08 Score=106.07 Aligned_cols=214 Identities=11% Similarity=0.070 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHH---------HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005905 170 VDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACA---------NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd~-~t~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 239 (670)
.++|+.+|++..+. .|+. ..|..+..++. ..+++++|...+++..+.+ +.+..++..+...+...
T Consensus 277 ~~~A~~~~~~Al~l----dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 277 LQQALKLLTQCVNM----SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHhc----CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 45666666666553 4432 23333333322 1233566666666666654 44556666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELY 319 (670)
Q Consensus 240 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (670)
|++++|...|++..+.+.. +...+..+..++...|++++|...++...+.... +...+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 6677777766666665432 3445555666666666777777666666665422 2222223333455566666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHH
Q 005905 320 EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 320 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~ 394 (670)
++..+...+-+...+..+..+|...|+.++|...+.++... .|+..+....+ ..+...| +.+...++.+.+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 66554321223444555566666666777776666665442 34443333333 2334444 355555555443
No 52
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.10 E-value=4.6e-07 Score=89.37 Aligned_cols=229 Identities=11% Similarity=0.032 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP------- 226 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------- 226 (670)
...+-+........|+++.|..-.++..+.. +.+.........+|.+.|++.....+...+.+.+.-.+.
T Consensus 153 l~v~ltrarlll~~~d~~aA~~~v~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~ 229 (400)
T COG3071 153 LAVELTRARLLLNRRDYPAARENVDQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ 229 (400)
T ss_pred HHHHHHHHHHHHhCCCchhHHHHHHHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH
Confidence 3344444445555555555555555554431 222334444555555555555555555555555443332
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~ 306 (670)
.+|+.+++-....+..+.-...+++.... .+-+...-.+++.-+.+.|+.++|.++..+..+++..++.. ..-.+
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~ 304 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPR 304 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhh
Confidence 23444444444444444433344443221 12233344445555555555555555555555555444411 11123
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386 (670)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 386 (670)
.+-++.+.-.+..++-.+.. +-++-.+.+|-..|.+++.+.+|.+.|+...+ ..|+..+|..+..++.+.|+..+|.
T Consensus 305 l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 305 LRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred cCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHH
Confidence 34444444444444332211 11224455555555555555555555554443 3455555555555555555555555
Q ss_pred HHHHHHH
Q 005905 387 MLLSQAK 393 (670)
Q Consensus 387 ~~~~~m~ 393 (670)
+..++..
T Consensus 382 ~~r~e~L 388 (400)
T COG3071 382 QVRREAL 388 (400)
T ss_pred HHHHHHH
Confidence 5555444
No 53
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.08 E-value=6.4e-06 Score=85.87 Aligned_cols=372 Identities=13% Similarity=0.070 Sum_probs=233.8
Q ss_pred hcCCHHHHHHHHHHHH----HcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC------CCCHHHHHHHHHHHHcCC
Q 005905 37 RQGRISECIDLLEDME----RKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP------NPTLSTFNMLMSVCASSK 106 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~----~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~y~~li~~~~~~g 106 (670)
++|+.+...+++++-. ..|+.-....... =...|-..|.+-.+..+..... ..--.+|+.-...|.+.+
T Consensus 452 ~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~-eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~ 530 (913)
T KOG0495|consen 452 ANGNVDMVEKIIDRGLSELQANGVEINRDQWLK-EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRP 530 (913)
T ss_pred hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH-HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcc
Confidence 7888888888877643 3454322222221 2334555555555544443321 122457777788888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-------HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA-------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179 (670)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~-------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 179 (670)
.++-|..+|...++- ++.+...|......=-..|..+. +...++...+.|-....-+-..|++..|..++.+
T Consensus 531 ~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 531 AIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred hHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 888888888877765 34455666665555445555543 2234556667777777777778888888888887
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005905 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259 (670)
Q Consensus 180 m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 259 (670)
..+. ...+...|..-+..-.....++.|..+|.+... ..|+..+|.--+..---.+..++|++++++.++.-..
T Consensus 610 af~~---~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~- 683 (913)
T KOG0495|consen 610 AFEA---NPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD- 683 (913)
T ss_pred HHHh---CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-
Confidence 7664 123455677777777778888888888877665 3456667766666666677788888888777765221
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005905 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT 339 (670)
Q Consensus 260 ~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 339 (670)
-...|..+-+.+-+.++++.|.+.|..-.+. ++..+..|-.|...--+.|++-.|+.+++..+-.+ +.|...|-..|.
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir 761 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIR 761 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHH
Confidence 2346666777777888888888777665544 35556677777777777888888888888776555 347778888888
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-H-hhHHH
Q 005905 340 ALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC-S-RRYEK 417 (670)
Q Consensus 340 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~-r~~~~ 417 (670)
.-.+.|..+.|..+..+..+. ++-+...|.--|....+.++-......+ ++.. -|..+.-.+-.++ + +.+++
T Consensus 762 ~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DAL---kkce--~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDAL---KKCE--HDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHH---Hhcc--CCchhHHHHHHHHHHHHHHHH
Confidence 888888888888777776654 3444556665555555555533333333 2322 2223332232222 2 25666
Q ss_pred HHHhHHH
Q 005905 418 ARTLNEH 424 (670)
Q Consensus 418 a~~l~~a 424 (670)
|...++-
T Consensus 836 ar~Wf~R 842 (913)
T KOG0495|consen 836 AREWFER 842 (913)
T ss_pred HHHHHHH
Confidence 6665543
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=99.07 E-value=1e-07 Score=104.98 Aligned_cols=218 Identities=11% Similarity=0.028 Sum_probs=162.1
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005905 167 SGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245 (670)
Q Consensus 167 ~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (670)
.+++++|...+++..+. .| +...+..+...+...|++++|...|++..+.+ +.+...+..+..+|...|++++|
T Consensus 317 ~~~~~~A~~~~~~Al~l----dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 317 QNAMIKAKEHAIKATEL----DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred chHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 35589999999999875 44 46677778888899999999999999999886 66778899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005905 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325 (670)
Q Consensus 246 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (670)
...+++..+.... +...+..++..+...|++++|...++++.+...+-+...+..+..+|...|++++|...+.++...
T Consensus 392 i~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 392 LQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 9999999988654 222333344456678999999999999887653335566778888999999999999999987654
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 326 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
. ..+...++.+...|...| ++|...++.+.+ ....|+...+..++ +.-.|+-+.+..+ +++.+.+
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 471 E-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred c-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHHH-HHhhccc
Confidence 2 224455666667777777 588888888765 22334433343333 4446666666665 7776654
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.1e-06 Score=88.54 Aligned_cols=314 Identities=14% Similarity=0.089 Sum_probs=204.7
Q ss_pred HhhhhhHHHHHHHhhhCC--CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 005905 71 CKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAM 146 (670)
Q Consensus 71 ~~~~~~~~~A~~~~~~~~--~~~-~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~~ 146 (670)
|.+.|.+++|+.++.... .|| .+-|.....+|...|+|+++.+--.+.++ +.|+- -.+.--.+++-..|+++++
T Consensus 125 ~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 125 FFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhccHHHH
Confidence 455677888888877643 455 66677777777888888877776666665 34543 2344455566666777665
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------H-HhhCCCCCCCCHHHHHHHHHHHH---------------
Q 005905 147 FENVKPDRVVFNALITACGQSGAVDRAFDVLA--------E-MNAEVHPVDPDHITIGALMKACA--------------- 202 (670)
Q Consensus 147 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~--------~-m~~~~~~~~pd~~t~~~li~~~~--------------- 202 (670)
+. .+|-.++..++....-...+.+++. + +.....++-|+.....+....+-
T Consensus 203 l~-----D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 203 LF-----DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred HH-----hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 43 1222233333333222222222221 1 22123345566544444443321
Q ss_pred ----------HcC---CHHHHHHHHHHHHHc-CCCC--C---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005905 203 ----------NAG---QVDRAREVYKMIHKY-NIKG--T---------PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257 (670)
Q Consensus 203 ----------~~g---~~~~A~~~~~~m~~~-~~~~--~---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 257 (670)
-.+ .++.|...+.+-... -..+ + ..+...-...+.-.|+...|..-|+..++...
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 011 233333333221110 0011 1 11122222334567899999999999998876
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337 (670)
Q Consensus 258 ~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 337 (670)
.++. .|--+..+|....+.++..+.|....+.+ +-+..+|..-..++.-.+++++|..-|++..+..+ -++..|-.+
T Consensus 358 ~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl 434 (606)
T KOG0547|consen 358 AFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQL 434 (606)
T ss_pred ccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHH
Confidence 6444 26667778999999999999999998876 56678888888888899999999999999987763 367778778
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 338 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
..+..+.+++++++..|++.++. ++--...|+.....+...++++.|.+.|+..++.
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 78888999999999999999875 5556788888899999999999999999988874
No 56
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.04 E-value=1e-07 Score=102.09 Aligned_cols=263 Identities=14% Similarity=0.131 Sum_probs=165.6
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhc
Q 005905 88 PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQS 167 (670)
Q Consensus 88 ~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~ 167 (670)
..|+.+||..+|.-||..|+.+.|- +|.-|....++.+...|+.++......++.+.+. .|-..+|..|..+|...
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---ep~aDtyt~Ll~ayr~h 96 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---EPLADTYTNLLKAYRIH 96 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---CCchhHHHHHHHHHHhc
Confidence 3577788888888888888888877 8888887777777788888887777777665443 57777888888888888
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 168 GAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK-YNIKGTPEVYTIAINCCSQTGDWEFAC 246 (670)
Q Consensus 168 g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (670)
||+.- |+...+ -...+...+...|.-..-..++..+.- .+.-||.. ..+.-..-.|.++.++
T Consensus 97 GDli~----fe~veq----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 97 GDLIL----FEVVEQ----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLL 159 (1088)
T ss_pred cchHH----HHHHHH----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHH
Confidence 88654 222211 111222333344433333333332211 11122221 2233334456666666
Q ss_pred HHHHHHHHCC-CCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 247 SVYDDMTKKG-VIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 247 ~l~~~m~~~g-~~p~~~t~~~li~~~~~~g-~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
+++..|.... ..|-.+ +++-+.... .+++-..+.+...+ .|+..+|.++++.-...|+++.|..++.+|++
T Consensus 160 kll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 6665553221 111111 233332222 23333333332222 57888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005905 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381 (670)
Q Consensus 325 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 381 (670)
.|++.+..-|..|+.+ .+...-+..++.-|.+.|+.|+..|+.-.+..|...|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888777777766 77777888888888888888998888888877777555
No 57
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=1.9e-05 Score=79.52 Aligned_cols=345 Identities=14% Similarity=0.096 Sum_probs=190.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCH-HHHHHHHHHHHcCCCHHHHHH
Q 005905 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTL-STFNMLMSVCASSKDSEGAFQ 113 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~-~~y~~li~~~~~~g~~~~A~~ 113 (670)
..+++..|..+|+..+..+. .+..+-...+..-.+.+.++.|..+|++.. -|-+ ..|-..+..=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHH
Confidence 35677789999999887662 333333334555567788888888887643 1222 234444444455688889999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 005905 114 VLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPV 187 (670)
Q Consensus 114 ~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 187 (670)
+|++-.. ..|+...|.+.|+.=.+...++.+.. .+.|++.+|---..-=.+.|.+..|..+|+.....
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~---- 236 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF---- 236 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH----
Confidence 9988776 47899999988888888777776443 45788888888777778888888888888887764
Q ss_pred CCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHH--------HHHHH
Q 005905 188 DPDHITIGALMKACA----NAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSV--------YDDMT 253 (670)
Q Consensus 188 ~pd~~t~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l--------~~~m~ 253 (670)
--|...-..+..+++ ++..++.|.-+|+-....- +.+ ...|......=-+-|+.....+. |+.+.
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 122222233333333 4566777777777666542 222 23343333333334443322222 22333
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccH-------HHHHHH---HHHHHhcCCHHHHHHHHHHHH
Q 005905 254 KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI-------ISYSSL---MGACSNAKNWQKALELYEHMK 323 (670)
Q Consensus 254 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~-------~~~~~l---i~~~~~~g~~~~A~~~~~~m~ 323 (670)
+.+. -|-.+|--.+..-...|+.+...++|+.....- +|-. .+|--+ +-.-....+++.+.++|+...
T Consensus 316 ~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3322 244455555555555566666666666555432 2211 111111 111123455555555555544
Q ss_pred hCCCCCCHHHHHHHHHHH----HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 324 SIKLKPTVSTMNALITAL----CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 324 ~~~~~p~~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
+. ++....||.-+--.| .++.++..|.+++.... |..|-.-+|...|..=.+.+.+|...++++..++.
T Consensus 394 ~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 394 DL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred hh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 32 122223333222222 24445555555554433 34555555555555555555555555555555543
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.01 E-value=3.1e-06 Score=83.64 Aligned_cols=241 Identities=15% Similarity=0.104 Sum_probs=153.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 240 (670)
..+--+.|+.+.|-.++.+..+. .-.++...+.+........|+++.|..-.+.+.+.+ +.++.+......+|.+.|
T Consensus 125 A~AA~qrgd~~~an~yL~eaae~--~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g 201 (400)
T COG3071 125 AEAAQQRGDEDRANRYLAEAAEL--AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLG 201 (400)
T ss_pred HHHHHhcccHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhc
Confidence 34555667777777777776553 113344445555566677777777777777777665 555677777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHH
Q 005905 241 DWEFACSVYDDMTKKGVIPDE-------VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 313 (670)
++.....+..+|.+.|+--|. .+|..+++-+...+..+.-...++...++ .+.++..-.+++.-+.++|+.+
T Consensus 202 ~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~ 280 (400)
T COG3071 202 AWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHD 280 (400)
T ss_pred cHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChH
Confidence 777777777777777765443 36677777666666666655566655443 2444555666777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392 (670)
Q Consensus 314 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 392 (670)
+|.++.++..+.+..|+. ...-.+.+-++...-++..++-.. .+..| ..+.+|-.-|.+.+.+.+|..+|+..
T Consensus 281 ~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaA 354 (400)
T COG3071 281 EAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAA 354 (400)
T ss_pred HHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777777666554441 122234455666555555555433 33333 55666666777777777777777765
Q ss_pred HHCCCCCCHHHHHHHHHHHHh
Q 005905 393 KEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 393 ~~~g~~p~~~~~~~li~~~~r 413 (670)
.+. .|+..+|+-+-+++.+
T Consensus 355 l~~--~~s~~~~~~la~~~~~ 373 (400)
T COG3071 355 LKL--RPSASDYAELADALDQ 373 (400)
T ss_pred Hhc--CCChhhHHHHHHHHHH
Confidence 554 4777777777776544
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.00 E-value=1.4e-05 Score=83.25 Aligned_cols=281 Identities=16% Similarity=0.180 Sum_probs=165.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005905 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQV 114 (670)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~ 114 (670)
++++|++-.-...|+..+..=......-+-...+++....+-.+.+++++++...-++..-+--|..+++.+++++|.+.
T Consensus 112 l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~ 191 (835)
T KOG2047|consen 112 LIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQR 191 (835)
T ss_pred HHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHH
Confidence 34788888888888888765432333334445666777778888899998876655555667778889999999999999
Q ss_pred HHHHHHcC------CCCCHHHHHHHHHHHHhcC------CHHHHHhc-CC--CC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 115 LRLVQEAG------LKADCKLYTTLITTCAKSG------KVDAMFEN-VK--PD--RVVFNALITACGQSGAVDRAFDVL 177 (670)
Q Consensus 115 ~~~m~~~g------~~pd~~~~~~li~~~~~~g------~~~~~~~~-~~--~~--~~~~~~li~~~~~~g~~~~A~~l~ 177 (670)
+...+... .+.+.-.|.-+.+..++.. ++|+.+.+ +. +| ...|++|.+-|.+.|.+++|..+|
T Consensus 192 la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 192 LATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVY 271 (835)
T ss_pred HHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 88776432 2445556776666666554 35555553 32 44 457999999999999999999999
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHHc----------------C------CHHHHHHHHHHHHHcC-----------CCC
Q 005905 178 AEMNAEVHPVDPDHITIGALMKACANA----------------G------QVDRAREVYKMIHKYN-----------IKG 224 (670)
Q Consensus 178 ~~m~~~~~~~~pd~~t~~~li~~~~~~----------------g------~~~~A~~~~~~m~~~~-----------~~~ 224 (670)
++.... .....-|..+.++|+.- | +++-...-|+.+.... -+.
T Consensus 272 eeai~~----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~ 347 (835)
T KOG2047|consen 272 EEAIQT----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPH 347 (835)
T ss_pred HHHHHh----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCc
Confidence 998764 23333444555554421 1 1222233333332221 012
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcc---
Q 005905 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP------DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG--- 295 (670)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~--- 295 (670)
++..|..-+.. ..|+..+-...|.+..+. +.| -...|..+...|-..|+++.|..+|++..+...+.-
T Consensus 348 nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 348 NVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred cHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 22333322222 234455555555555432 111 123455566666666666666666666555443221
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
..+|..-..+=.+..+++.|+++.+..
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 345555555555666666666655544
No 60
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.00 E-value=2.1e-07 Score=99.81 Aligned_cols=270 Identities=16% Similarity=0.163 Sum_probs=135.6
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 005905 46 DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP----NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEA 121 (670)
Q Consensus 46 ~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~ 121 (670)
..+-.+...|+.|...++.. ++.-|+..|+++.|- +|..|. +-+...|+.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqs-LiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQS-LIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHH-HHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 34566777888766544444 555555667777776 666654 234556888888888887776665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Q 005905 122 GLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC 201 (670)
Q Consensus 122 g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~ 201 (670)
.|-..||+.|..+|...|++.. |+.++.| .-.++..+...|.-..-..++..+.-. .+.-||..+ .+.-.
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~-fe~veqd---Le~i~~sfs~~Gvgs~e~~fl~k~~c~-p~~lpda~n---~illl 149 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLIL-FEVVEQD---LESINQSFSDHGVGSPERWFLMKIHCC-PHSLPDAEN---AILLL 149 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHH-HHHHHHH---HHHHHhhhhhhccCcHHHHHHhhcccC-cccchhHHH---HHHHH
Confidence 5778888888888888888765 3322221 122333444444444444444333222 233344332 22223
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005905 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280 (670)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 280 (670)
.-.|-++.+++++..+..........+ .++-+.... .+++-..+.....+ .|+..+|..++.+..-+|+.+.|
T Consensus 150 v~eglwaqllkll~~~Pvsa~~~p~~v---fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 150 VLEGLWAQLLKLLAKVPVSAWNAPFQV---FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHhhCCcccccchHHH---HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhH
Confidence 334444444444444332211110011 122221111 11111111111111 24555555555555555555555
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 005905 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD 345 (670)
Q Consensus 281 ~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 345 (670)
..++.+|.+.|++.+..-|-.|+-+ .++..-++.+...|.+.|+.|+..|+.-.+..+..+|
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 5555555555555554433344332 4555555555555555555555555555444444433
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=6.8e-08 Score=92.10 Aligned_cols=230 Identities=15% Similarity=0.005 Sum_probs=181.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005905 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237 (670)
Q Consensus 158 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 237 (670)
+.|.++|.+.|.+.+|.+.|+..... .|-..||..+-+.|.+..+.+.|+.+|.+-.+. ++.++....-+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHH
Confidence 57888999999999999999888765 556678888889999999999999999888764 3555555566778888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 005905 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317 (670)
Q Consensus 238 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (670)
..++.++|.++|+...+.... +.....++...|.-.++.+.|+.+|+.+.+.|. .+...|+.+.-+|.-.++++-+..
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 889999999999998876543 666777777788888899999999999999884 457788888888888899999998
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 318 LYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 318 ~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
-|++....--.|+ ...|-.+-......|++.-|.+.|+-..... .-+...++.|.-.-.+.|++++|..+++.....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 8888775433343 3457777777778899999999998877642 334577887777777889999999998876653
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.7e-06 Score=86.49 Aligned_cols=278 Identities=10% Similarity=0.052 Sum_probs=210.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH-------HHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHH
Q 005905 123 LKADCKLYTTLITTCAKSGKVDA-------MFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG 195 (670)
Q Consensus 123 ~~pd~~~~~~li~~~~~~g~~~~-------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~ 195 (670)
+.-+......-.+-|-..+++.+ +++..+++...+..=|.++...|+..+-+.+=.++++. .+....+|-
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~---yP~~a~sW~ 316 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL---YPSKALSWF 316 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh---CCCCCcchh
Confidence 33444555555555556666654 44455677777777788888999888888888888775 244468899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHh
Q 005905 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~ 273 (670)
++.--|...|+..+|++.|.+....+ +.-...|-.....|+-.|..++|+..+...-+. |.. -+..| +---|.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~ 392 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMR 392 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHH
Confidence 99988888999999999998887655 223467888899999999999999888766442 221 11223 2334778
Q ss_pred cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC--CCHHHHHHHHHHHHhCCCh
Q 005905 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS----IKLK--PTVSTMNALITALCDGDQL 347 (670)
Q Consensus 274 ~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~--p~~~~~~~li~~~~~~g~~ 347 (670)
.+.++.|.+.|.+..... +.|+.+.+-+.-..-..+.+.+|...|+.... .+.+ .-..+++.|..+|.+.+++
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 899999999999988764 77888888888888888999999999987652 1111 1345688899999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411 (670)
Q Consensus 348 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (670)
++|+..|++.... .+-|..|+.++.-.+...|+++.|...|.+... +.|+..+...++..+
T Consensus 472 ~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 472 EEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999999998875 355788888888889999999999999986654 679988888887764
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=1.8e-07 Score=89.32 Aligned_cols=231 Identities=14% Similarity=0.088 Sum_probs=191.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHh------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHH-HHH
Q 005905 126 DCKLYTTLITTCAKSGKVDAMFE------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG-ALM 198 (670)
Q Consensus 126 d~~~~~~li~~~~~~g~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~-~li 198 (670)
|-.--+-+-++|.+.|.+.++.. .-.|-+.||-.|-++|.+..+++.|+.+|.+-... .|-.+||. -+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~----fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----CCchhhhhhhhH
Confidence 33344678889999998876544 23578889999999999999999999999998864 56666664 356
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005905 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278 (670)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 278 (670)
+.+-..++.++|.++|+...+.. +.++.....+...|.-.++++-|+..|+.+++.|+. +...|+.+--+|.-.+++|
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 67888999999999999998875 667777777888888999999999999999999987 7888998988999999999
Q ss_pred HHHHHHHHHHHCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 005905 279 AAFEILQEAKNQGISVG--IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356 (670)
Q Consensus 279 ~A~~i~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 356 (670)
-++.-|......--.|+ ..+|-.|.......|++..|.+.|+-....+ ..+..++|.|...-.+.|++++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 99999998876644444 3567778888889999999999999888765 34778999999999999999999999998
Q ss_pred HHhCCCCCC
Q 005905 357 MKSLGLCPN 365 (670)
Q Consensus 357 m~~~g~~p~ 365 (670)
... +.|+
T Consensus 455 A~s--~~P~ 461 (478)
T KOG1129|consen 455 AKS--VMPD 461 (478)
T ss_pred hhh--hCcc
Confidence 776 3555
No 64
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=7.6e-07 Score=91.34 Aligned_cols=268 Identities=15% Similarity=0.068 Sum_probs=211.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh-------cCCCCHHHHHHHHHHHHhcCCH
Q 005905 98 LMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------NVKPDRVVFNALITACGQSGAV 170 (670)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~ 170 (670)
-..-|...+++.+...+++...+.. ++....+..=|.++...|+..+.|. ..+...++|-++.--|.-.|+.
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCc
Confidence 3445667889999999999988864 5666677777778889998777654 4566789999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY--NIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
.+|.+.|.+...-+... ...|....+.|+-.|.-|+|...|...-+. |. --+..|. .--|.+.+..+.|.+.
T Consensus 329 seARry~SKat~lD~~f---gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LYl--gmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTF---GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLYL--GMEYMRTNNLKLAEKF 402 (611)
T ss_pred HHHHHHHHHHhhcCccc---cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHHH--HHHHHHhccHHHHHHH
Confidence 99999999886543222 347888999999999999999999776553 21 1123343 3357889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----G--ISVGIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
|.+.....+ -|...++-+--..-..+.+.+|..+|+..... + ...-..+++.|.++|.+++.+++|...|++.
T Consensus 403 f~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 999876643 36777777777777789999999999887622 1 1123567899999999999999999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005905 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376 (670)
Q Consensus 323 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 376 (670)
.... +.|..++.++.-.|...|+++.|++.|.+... +.||..+-..++.-+
T Consensus 482 L~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 482 LLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 8765 55999999999999999999999999999775 789998888877643
No 65
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.92 E-value=4.8e-07 Score=95.48 Aligned_cols=239 Identities=16% Similarity=0.118 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCC-CCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAE---VHP-VDPDHITI-GALMKACANAGQVDRAREVYKMIHKY-----NIK 223 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~-~~pd~~t~-~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~ 223 (670)
..+...+...|...|+++.|..++.+..+. ..| ..|...+. +.+...|...+++++|..+|+++... | .
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G-~ 277 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG-E 277 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC-C
Confidence 345555889999999999999999887653 112 13443333 33666788999999999999988653 2 2
Q ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 005905 224 GT---PEVYTIAINCCSQTGDWEFACSVYDDMTKK-----GVIP-DE-VFLSALIDFAGHAGKVEAAFEILQEAKNQ--- 290 (670)
Q Consensus 224 ~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p-~~-~t~~~li~~~~~~g~~~~A~~i~~~m~~~--- 290 (670)
.+ ..+++.|..+|.+.|++++|...++...+. |..+ .. .-++.+...|+..+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 22 345677777899999999988888776431 2221 21 24667777889999999999988876542
Q ss_pred CCC----ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHH-
Q 005905 291 GIS----VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KL---KPTVSTMNALITALCDGDQLPKTMEVLSDMK- 358 (670)
Q Consensus 291 ~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~- 358 (670)
-+. .-..+++.|...|-+.|++++|+++|++.... +. .-.-..++.|...|.+.+++.+|.++|.+-.
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 111 22468999999999999999999999987642 11 1124567788889999999999999998743
Q ss_pred ---hCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 359 ---SLGL-CPN-TITYSILLVACERKDDVEVGLMLLSQAK 393 (670)
Q Consensus 359 ---~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 393 (670)
..|. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3332 223 4678889999999999999999987765
No 66
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.91 E-value=5.1e-06 Score=88.88 Aligned_cols=294 Identities=12% Similarity=0.085 Sum_probs=196.0
Q ss_pred HHHHhhhhhHHHHHHHhhhCC--CCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCCH
Q 005905 68 FNVCKSQKAIKEAFRFFKLVP--NPTLS-TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT-LITTCAKSGKV 143 (670)
Q Consensus 68 ~~~~~~~~~~~~A~~~~~~~~--~~~~~-~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~-li~~~~~~g~~ 143 (670)
..++...|++++|++.+.... -.|.. ........+.+.|+.++|..+|..+++.+ |+...|-. |..+..-...
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~- 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQ- 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcc-
Confidence 445677899999999987653 24544 45566788999999999999999999985 56555543 3333321110
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCC
Q 005905 144 DAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD-RAREVYKMIHKYNI 222 (670)
Q Consensus 144 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~-~A~~~~~~m~~~~~ 222 (670)
....+.+...++|+++... -|......-+.-.+..-..+. .+...+..+...|+
T Consensus 88 ---------------------~~~~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 88 ---------------------LSDEDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred ---------------------cccccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 0112456667777777654 233222222211122212232 34444566777786
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHH
Q 005905 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK----G----------VIPDE--VFLSALIDFAGHAGKVEAAFEILQE 286 (670)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g----------~~p~~--~t~~~li~~~~~~g~~~~A~~i~~~ 286 (670)
| .+++.|-..|.......-...++...... + -.|.. .++.-+.+.|...|++++|+++++.
T Consensus 143 P---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~ 219 (517)
T PF12569_consen 143 P---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDK 219 (517)
T ss_pred c---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4 57777777777666555555666655432 1 12333 3456667788889999999999999
Q ss_pred HHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 287 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
.+++. +..+..|..-...|-..|++.+|.+.++..++.+. -|-..-+-.+..+.++|+.++|.+++....+.+..|-.
T Consensus 220 aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 220 AIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred HHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 98875 44477888888999999999999999999988764 36666777788888999999999999888776644422
Q ss_pred H------HH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 367 I------TY--SILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 367 ~------t~--~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
. .| .-...+|.+.|++..|++-|....+
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 22 2344578899999999888776654
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.89 E-value=3e-06 Score=85.59 Aligned_cols=221 Identities=11% Similarity=-0.020 Sum_probs=158.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005905 167 SGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244 (670)
Q Consensus 167 ~g~~~~A~~l~~~m~~~~~~~~pd--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 244 (670)
.+..+.++.-+.++.... ...|+ ...|..+...+...|+.++|...|++..+.. +.+..+|+.+...|...|++++
T Consensus 39 ~~~~e~~i~~~~~~l~~~-~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 39 TLQQEVILARLNQILASR-DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred chHHHHHHHHHHHHHccc-cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 346778888888887642 23333 3457777788899999999999999998876 5678899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 245 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
|...|++..+.... +..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...|.+...
T Consensus 117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99999999887544 56677888888899999999999999998765 3222122222234556789999999976553
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC-----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005905 325 IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-----LCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397 (670)
Q Consensus 325 ~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 397 (670)
.. .|+...| ...+...|+..++ +.+..+.+.. +.| ....|..+...+.+.|++++|...|++..+.+.
T Consensus 194 ~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 194 KL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred hC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 22 3333222 2233345666555 4555555321 111 235788888899999999999999999988663
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.88 E-value=0.00019 Score=75.11 Aligned_cols=378 Identities=16% Similarity=0.145 Sum_probs=238.6
Q ss_pred CCCchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHhhhhhHH---HHHHHhhhCC--CCC
Q 005905 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLL-----DMDKVYHARFFNVCKSQKAIK---EAFRFFKLVP--NPT 91 (670)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~-----~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~--~~~ 91 (670)
+.++.........|++.+++++|-+.+......+.. +.+..+...+..+..+.-+.- ..-.+++.+. -+|
T Consensus 166 k~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftD 245 (835)
T KOG2047|consen 166 KVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTD 245 (835)
T ss_pred hcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcH
Confidence 444555555566677889999999999888654321 333333333444433322211 1122344433 133
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH------H----------H--------
Q 005905 92 --LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV------D----------A-------- 145 (670)
Q Consensus 92 --~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~------~----------~-------- 145 (670)
-..|++|..-|.+.|.+++|..+|++.++.- ....-|+.+.++|+.-..- + .
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 4579999999999999999999999988752 3444455666665532110 0 0
Q ss_pred -HHh----------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC------HHHHHHHHHHHH
Q 005905 146 -MFE----------------NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD------HITIGALMKACA 202 (670)
Q Consensus 146 -~~~----------------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd------~~t~~~li~~~~ 202 (670)
.|+ .-..++..|..-+.. ..|+..+-...|.+..+. +.|- ...|..+.+.|-
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~---vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT---VDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc---cCcccCCCChhhHHHHHHHHHH
Confidence 011 112344555544443 356778888888888764 4443 245777888899
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------CC-------CHH
Q 005905 203 NAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGV----------IP-------DEV 262 (670)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----------~p-------~~~ 262 (670)
..|+++.|..+|++..+...+.- ..+|..-...=.+..+++.|+++.+.....-- .| +..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 99999999999999988665432 34666666666777888889888876643211 11 223
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 005905 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV-STMNALITAL 341 (670)
Q Consensus 263 t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~ 341 (670)
.|+..++.--..|-++....+|+.+.+..+.....+.|- ..-+-...-++++.++|++=...=..|++ ..||..+.-+
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny-AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY-AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 566666666677889999999999988775443333332 22234566789999999876554334554 4677776665
Q ss_pred Hh---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHH
Q 005905 342 CD---GDQLPKTMEVLSDMKSLGLCPNTITYSILLVA--CERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCIIG 409 (670)
Q Consensus 342 ~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~ 409 (670)
.+ ..+.+.|..+|++..+ |++|...-+.-|+.| =.+.|....|+.++++... ++.+. ..+|+..|.
T Consensus 558 i~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~ 630 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIK 630 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 53 3468999999999998 777776555555544 2356888899999988654 23332 244555553
No 69
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=0.00017 Score=72.88 Aligned_cols=370 Identities=17% Similarity=0.199 Sum_probs=260.7
Q ss_pred hhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---
Q 005905 72 KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA--- 145 (670)
Q Consensus 72 ~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~--- 145 (670)
..++++..|..+|++.. ..+...|-.-+..=.++..+..|..++++.+..=...|. .|---+.+=-..|++..
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHH
Confidence 45678888999998764 466777888888888999999999999999875322233 23333444445566654
Q ss_pred HHh---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C
Q 005905 146 MFE---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY-N 221 (670)
Q Consensus 146 ~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~ 221 (670)
+|+ ..+|+...|++.|+-=.+-..++.|..+|++.+- +.|++.+|.-...-=.++|++..|..+|....+. |
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~----~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL----VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 455 5789999999999999999999999999999985 5799999998888888999999999999877653 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHH--------HHHHHHCC
Q 005905 222 I-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEI--------LQEAKNQG 291 (670)
Q Consensus 222 ~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~i--------~~~m~~~~ 291 (670)
- ..+...+++....=.++..++.|.-+|+-.++.=.+-. ...|..+...=-+-|+.....+. ++.+++.+
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 1 11233455555555667788899999988776532211 34455555444444554433322 34445554
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHH--------HHHhCCChhHHHHHHHHHHhCC
Q 005905 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV--STMNALIT--------ALCDGDQLPKTMEVLSDMKSLG 361 (670)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~--------~~~~~g~~~~A~~l~~~m~~~g 361 (670)
+.|-.+|--.+..-...|+.+...++|+..... ++|-. ..|.-.|. .=....+.+.+.++|+...+.
T Consensus 319 -p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 319 -PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred -CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 567778888888888899999999999998754 23321 12322222 122568899999999999883
Q ss_pred CCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hhHHHHHHhHHHhhhhcCCCccc
Q 005905 362 LCPNTITYSILLVAC----ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS--RRYEKARTLNEHVLSFNSGRPQI 435 (670)
Q Consensus 362 ~~p~~~t~~~ll~a~----~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~--r~~~~a~~l~~a~~~~~~~~~~~ 435 (670)
++-..+||.-+--.| .++.++..|.+++...+ |.-|...+|...|.+=. +.++.|..+.+....|.+..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~--- 470 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPEN--- 470 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHh---
Confidence 555678877554333 47789999999998654 66799999998887644 37888998888777766543
Q ss_pred hhhhH------------HHHHHHHHHHHHcC
Q 005905 436 ENKWT------------SLALMVYREAIVAG 454 (670)
Q Consensus 436 ~~~~~------------~~A~~~~~~m~~~~ 454 (670)
-..|. +.|-.+|.-.+..+
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 23343 34667777776544
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=5.6e-05 Score=78.37 Aligned_cols=382 Identities=14% Similarity=0.117 Sum_probs=214.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhhhHHHHHHHh-------------------------
Q 005905 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFF------------------------- 84 (670)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~------------------------- 84 (670)
..|...++|++++|++...+++..+ |.+. .++..+. ...+.+.+++|+.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvV-alIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVV-ALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHh-hhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHccc
Confidence 3455557888888888888888776 3332 2332222 223344555554332
Q ss_pred --------hhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHhcCC-CCH
Q 005905 85 --------KLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFENVK-PDR 154 (670)
Q Consensus 85 --------~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~~~~~~~-~~~ 154 (670)
....+.|..+...=...|.+.+++++|+.+|+.+.+++..- |...-..++.+-.... .+ ..+.++ ...
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~-~~-~~q~v~~v~e 172 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ-VQ-LLQSVPEVPE 172 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh-HH-HHHhccCCCc
Confidence 21222233333344567788899999999999988776421 1222223332222211 11 222211 112
Q ss_pred HHHHH---HHHHHHhcCCHHHHHHHHHHHhh--------CCCCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHH
Q 005905 155 VVFNA---LITACGQSGAVDRAFDVLAEMNA--------EVHPVDPDHITI-----GALMKACANAGQVDRAREVYKMIH 218 (670)
Q Consensus 155 ~~~~~---li~~~~~~g~~~~A~~l~~~m~~--------~~~~~~pd~~t~-----~~li~~~~~~g~~~~A~~~~~~m~ 218 (670)
.+|.. ....+...|++.+|+++++...+ ...+ .-+...= .-+.-.+-..|+-++|..+|....
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~-eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN-EEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc-hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 23333 34456788999999999988821 1101 1111111 122334557899999999999998
Q ss_pred HcCCCCCHH----HHHHHHHHHHhcCCHH-HHHHHHHH----------------------------------------HH
Q 005905 219 KYNIKGTPE----VYTIAINCCSQTGDWE-FACSVYDD----------------------------------------MT 253 (670)
Q Consensus 219 ~~~~~~~~~----~~~~li~~~~~~g~~~-~A~~l~~~----------------------------------------m~ 253 (670)
+.+. +|.. .-|.|+.+-....-++ .++..++. ..
T Consensus 252 ~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 252 KRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred HhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8763 3331 1122221110000000 00000000 00
Q ss_pred -HC-CCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH--------H
Q 005905 254 -KK-GVIPDEVFLSALIDFAGHA--GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE--------H 321 (670)
Q Consensus 254 -~~-g~~p~~~t~~~li~~~~~~--g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~ 321 (670)
.. +..| ...+..++..+.+. .....+.+++...-+....-...+.-.++......|+++.|.+++. .
T Consensus 331 a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 331 ASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred HhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 00 1122 23444555544332 2355666666666554433335566677888899999999999999 6
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh--CCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHC
Q 005905 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS--LGLCPNTITYSILLV----ACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 322 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~----a~~~~g~~~~a~~~~~~m~~~ 395 (670)
+.+.+..|-. ..++...|.+.++.+-|..++.+... ..-.+......+++. --.+.|.-++|...++++.+.
T Consensus 410 ~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 410 ILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 6665555554 45577778888888888888877654 111233333333333 335679999999999999986
Q ss_pred CCCCCHHHHHHHHHHHHh-hHHHHHHhHH
Q 005905 396 GVIPNLVMFKCIIGMCSR-RYEKARTLNE 423 (670)
Q Consensus 396 g~~p~~~~~~~li~~~~r-~~~~a~~l~~ 423 (670)
. .+|..+..++|.+|++ ..++|..+..
T Consensus 488 n-~~d~~~l~~lV~a~~~~d~eka~~l~k 515 (652)
T KOG2376|consen 488 N-PNDTDLLVQLVTAYARLDPEKAESLSK 515 (652)
T ss_pred C-CchHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 4 5889999999999998 6666666654
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.84 E-value=1.1e-06 Score=92.72 Aligned_cols=200 Identities=16% Similarity=0.069 Sum_probs=148.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCC---CC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCCH-
Q 005905 159 ALITACGQSGAVDRAFDVLAEMNAEV---HP-VDPD-HITIGALMKACANAGQVDRAREVYKMIHKY-----NI-KGTP- 226 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~~~~---~~-~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~- 226 (670)
.+...|...+++++|..+|+++...- .| ..|. ..+++.|..+|.+.|++++|...++...+. +. .+.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 46678888999999999998886530 01 1222 456777888899999999998888766432 11 1111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------C
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKK---GVIPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-------I 292 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~-------~ 292 (670)
..++.+...|+..+++++|..++....+. -+.++ ..+++.|...|.+.|++++|.++|+.+.... .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 23667788899999999999999876542 12222 3588999999999999999999999886431 1
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCC--CCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 293 SVGIISYSSLMGACSNAKNWQKALELYEHMK----SIKL--KPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
.-....++.|...|.+.+.+++|.++|.+.. ..|+ +-...+|..|...|...|++++|+++.+...
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2224567888999999999999999998754 3332 2235678999999999999999999988865
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.82 E-value=5.1e-06 Score=88.86 Aligned_cols=288 Identities=13% Similarity=0.055 Sum_probs=166.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHHHHH-HHHHHcC-----C
Q 005905 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML-MSVCASS-----K 106 (670)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~l-i~~~~~~-----g 106 (670)
+...|++++|++.+++-...- .+...+......++.+.|+.++|...++.+. .|+...|-.. ..+..-. .
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I--~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQI--LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 348999999999998865443 5667777778889999999999999998774 4655555444 4444222 2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 005905 107 DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186 (670)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 186 (670)
+.+.-..+|+++...- |.......+.-.+.. ...|.. .+..++..+... |
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~--------------g~~F~~------------~~~~yl~~~l~K--g 141 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLE--------------GDEFKE------------RLDEYLRPQLRK--G 141 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCC--------------HHHHHH------------HHHHHHHHHHhc--C
Confidence 4566677777776542 332222211111111 111111 122223333332 2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHH
Q 005905 187 VDPDHITIGALMKACANAGQVDRAREVYKMIHKY--------------NIKGTPEVY--TIAINCCSQTGDWEFACSVYD 250 (670)
Q Consensus 187 ~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--------------~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~ 250 (670)
+++ +|+.+-..|......+-..+++...... .-+|+...| .-+...|...|++++|+++++
T Consensus 142 vPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 142 VPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred Cch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 222 4444444444444444444444333221 112333333 445666677777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-
Q 005905 251 DMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP- 329 (670)
Q Consensus 251 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p- 329 (670)
+.++.... ....|..-...+-+.|++.+|.+.++.....+ .-|..+-+-.+..+.++|++++|.+++......+..|
T Consensus 219 ~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~ 296 (517)
T PF12569_consen 219 KAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL 296 (517)
T ss_pred HHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc
Confidence 77766432 34566666777777777777777777777665 4456666666677777777777777777665443222
Q ss_pred -CHH----HH--HHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 330 -TVS----TM--NALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 330 -~~~----~~--~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
|.. .| .....+|.+.|++..|++-|....+
T Consensus 297 ~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 297 SNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111 12 3345677778888777776666544
No 73
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.75 E-value=1.2e-05 Score=73.85 Aligned_cols=196 Identities=11% Similarity=0.048 Sum_probs=120.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005905 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA 274 (670)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~ 274 (670)
.-+.-+|...|++..|..-+++.++.+ +.+..+|..+...|.+.|+.+.|.+-|++..+.... +..+.|..-..+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 344455666666666666666666655 445566666666666667666666666666655433 445556666666666
Q ss_pred CChHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 005905 275 GKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353 (670)
Q Consensus 275 g~~~~A~~i~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 353 (670)
|++++|...|+.......- .-..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.|.......|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 6777777666666654321 12345555665666667777777777766655422 344555566666667777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 354 LSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 354 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
++.....|. ++..+....|..-...|+.+.+-++=..+.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 766666543 6666666666666666766666655544444
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.72 E-value=0.00023 Score=74.74 Aligned_cols=356 Identities=14% Similarity=0.108 Sum_probs=226.7
Q ss_pred HHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHH
Q 005905 29 LHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVC 102 (670)
Q Consensus 29 ~~~~~~l~---~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~ 102 (670)
...|...+ ..+++...+++.+.++... |......++..-.....|+-++|....+... ..+.+.|.++.-.+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 34455555 4689999999999998854 5554444444444455688899988877654 35678899999999
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh-------cCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------NVKPDRVVFNALITACGQSGAVDRAFD 175 (670)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~ 175 (670)
....++++|+..|+..+..+ +.|...+.-|.-.-+..++++..++ ........|.....++.-.|+...|..
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998864 3355556555555555666654333 334567889999999999999999999
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 176 VLAEMNAEVHPVDPDHITIGALM------KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249 (670)
Q Consensus 176 l~~~m~~~~~~~~pd~~t~~~li------~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 249 (670)
+.++..+.. .-.|+...|.-.. ......|.++.|.+.+..-... +......-.+-.+.+.+.+++++|..++
T Consensus 165 il~ef~~t~-~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQ-NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhh-ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 999988752 1246655554332 2345678888887776554432 1112223345567788889999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHH-HHHH----------------------------------HHHHCCCC
Q 005905 250 DDMTKKGVIPDEVFLSALIDFAG-HAGKVEAAF-EILQ----------------------------------EAKNQGIS 293 (670)
Q Consensus 250 ~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~A~-~i~~----------------------------------~m~~~~~~ 293 (670)
..++... ||..-|...+..+. +-.+.-++. .+|. .+.+.|++
T Consensus 243 ~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 243 RRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 9988874 56665554444333 222222222 3333 33333432
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhCC----------CCCCHHHHH--HHHHHHHhCCChhHHHHHHHHH
Q 005905 294 VGIISYSSLMGACSNAKNWQKALEL----YEHMKSIK----------LKPTVSTMN--ALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~----------~~p~~~~~~--~li~~~~~~g~~~~A~~l~~~m 357 (670)
+ ++..+...|-.-...+-..++ ...+...| -+|....|. .++..|-+.|+++.|+..++..
T Consensus 321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2 333333333322221111111 11111111 145555554 5678888999999999999988
Q ss_pred HhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 358 KSLGLCPNTI-TYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 358 ~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
... .|+.+ -|..=.+.+.+.|++++|..++++..+..
T Consensus 398 IdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 398 IDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred hcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 764 67754 34444577899999999999999888764
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.71 E-value=1.6e-05 Score=80.32 Aligned_cols=206 Identities=12% Similarity=-0.017 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
..|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.+ +.+..+|..+..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~ 140 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 456777778889999999999999988752 3346788889999999999999999999998865 456778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH
Q 005905 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (670)
++...|++++|.+.|+...+.... ..........+...++.++|...+....... .++...+ .+.. ...|+...
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~--~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPN--DPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHH--HHccCCCH
Confidence 899999999999999998876543 2211222223445678999999997755432 3332222 2333 33455444
Q ss_pred HHHHHHHHHhCC---C---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 315 ALELYEHMKSIK---L---KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372 (670)
Q Consensus 315 A~~~~~~m~~~~---~---~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 372 (670)
+ +.+..+.+.- + +.....|..+...+.+.|++++|+..|++..+.. +||.+-+...
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~ 276 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYA 276 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHH
Confidence 3 3444443210 0 1134578889999999999999999999988753 3465555443
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.66 E-value=2.5e-05 Score=71.84 Aligned_cols=208 Identities=16% Similarity=0.042 Sum_probs=172.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
+...|.-+|.+.|+...|..-+++..+. .|+ ..+|..+...|-+.|+.+.|.+-|+...+.. +.+..+.|.--.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~----DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH----DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhH
Confidence 4556778899999999999999999885 454 5678888899999999999999999998876 566788899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHH
Q 005905 235 CCSQTGDWEFACSVYDDMTKKGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 313 (670)
.+|..|.+++|...|++....-. .--..||..+.-+..+.|+.+.|..+|++..+.. +-...+.-.+.....+.|++-
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccch
Confidence 99999999999999999876522 2234578888888889999999999999999886 334556678888999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372 (670)
Q Consensus 314 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 372 (670)
.|...++.....+. ++..+.-..|..-...|+.+.+-+.=.++.+. .|...-|..+
T Consensus 191 ~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 191 PARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 99999999887764 78888888888888999999888877777763 5766655443
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.65 E-value=0.0011 Score=69.94 Aligned_cols=348 Identities=11% Similarity=0.093 Sum_probs=214.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCCHHHHHH
Q 005905 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQ 113 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~y~~li~~~~~~g~~~~A~~ 113 (670)
...++++|++.|......+ |+|..+..-+.-+-.+.++++.....-... .+.....|..+..+.--.|++..|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888887776 677666655555555556665554443222 23445678788888888899999999
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHH------HHHhcCCHHHHHhc---CCC---CHHHH-HHHHHHHHhcCCHHHHHHHHHH
Q 005905 114 VLRLVQEAG-LKADCKLYTTLIT------TCAKSGKVDAMFEN---VKP---DRVVF-NALITACGQSGAVDRAFDVLAE 179 (670)
Q Consensus 114 ~~~~m~~~g-~~pd~~~~~~li~------~~~~~g~~~~~~~~---~~~---~~~~~-~~li~~~~~~g~~~~A~~l~~~ 179 (670)
+.+...+.- -.|+...|..... ...+.|..+.+.+. .++ |...+ ..-...+.+.+++++|..+|..
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 998888764 2466666544332 33456777766663 222 22222 2445678889999999999999
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHH-HcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005905 180 MNAEVHPVDPDHITIGALMKACA-NAGQVDRAR-EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257 (670)
Q Consensus 180 m~~~~~~~~pd~~t~~~li~~~~-~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 257 (670)
+... .||.+-|...+..+. +--+.-++. .+|....+. .+.....-..=++......-.+..-.++..+.+.|+
T Consensus 245 Ll~r----nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 245 LLER----NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HHhh----CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence 9875 688777766655444 333333333 556555432 111111111111222222233445566777788887
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCC----------CCccHHH--HHHHHHHHHhcCCHHHHHHHHHH
Q 005905 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAK----NQG----------ISVGIIS--YSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 258 ~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~----~~~----------~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
++ ++..+.+.|-.-...+-..++.-.+. ..| -+|.... +-.++..|-+.|+++.|....+.
T Consensus 320 p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 320 PS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred Cc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 64 44555555533222221122221111 111 1444444 44678889999999999999998
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005905 322 MKSIKLKPTVS-TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397 (670)
Q Consensus 322 m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 397 (670)
...+ .|+.+ .|..=...+...|.+++|...+++.++.. .||...=.--..-..++...++|.++.....+.|.
T Consensus 397 AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 397 AIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred Hhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 8765 55543 44445577889999999999999998753 45554444445556688999999999998888764
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.64 E-value=6.1e-06 Score=82.23 Aligned_cols=248 Identities=18% Similarity=0.168 Sum_probs=148.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDM-DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A 111 (670)
...--.|++..++.-.+ ..... +. ......++.+.+...|..+.++.-......|.......+...+....+-+.+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~--~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFS--PENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTST--CHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCC--chhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHH
Confidence 33345788888887666 22222 22 2334445666777778777766666555567666665555555443455555
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHhcCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 005905 112 FQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDAMFENVK--PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188 (670)
Q Consensus 112 ~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 188 (670)
+.-+++.......++. ........++...|+++++++.+. .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQI----D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----C
Confidence 5554444333333222 333333345566788888877543 35666777778888888888888888888753 3
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 189 PDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264 (670)
Q Consensus 189 pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 264 (670)
.|. +...+..++.. ...+.+|..+|+++.+. ..+++.+.|.+..++...|++++|.+++.+....+.. |..++
T Consensus 162 eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~L 238 (290)
T PF04733_consen 162 EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTL 238 (290)
T ss_dssp CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHH
T ss_pred CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHH
Confidence 443 33344444432 23578888888887654 4667778888888888888888888888887665543 56677
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHC
Q 005905 265 SALIDFAGHAGKV-EAAFEILQEAKNQ 290 (670)
Q Consensus 265 ~~li~~~~~~g~~-~~A~~i~~~m~~~ 290 (670)
..++.++...|+. +.+.+.+.++...
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 7777777777776 5666777776654
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.62 E-value=0.00016 Score=75.46 Aligned_cols=266 Identities=17% Similarity=0.061 Sum_probs=116.0
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179 (670)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 179 (670)
..+...|++++|..++++..+.. +.|...+.. ...+...|.. .+..+.+.+.+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~-----------------------~~~~~~~~~~l~~ 105 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDF-----------------------SGMRDHVARVLPL 105 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhccc-----------------------ccCchhHHHHHhc
Confidence 45566788899998888887752 223333332 1122222211 2222333333322
Q ss_pred HhhCCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-
Q 005905 180 MNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV- 257 (670)
Q Consensus 180 m~~~~~~~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~- 257 (670)
.. +..|+. .....+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|...+++......
T Consensus 106 ~~----~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 106 WA----PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred cC----cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 11 112222 222233344555555555555555555543 33344555555555555555555555555544321
Q ss_pred CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CccHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHhCCC-
Q 005905 258 IPDE--VFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISY-S--SLMGACSNAKNWQKALEL---YEHMKSIKL- 327 (670)
Q Consensus 258 ~p~~--~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~-~~~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m~~~~~- 327 (670)
.|+. ..|..+...+...|+.++|..++++...... .+..... + .++.-+...|....+.+. .........
T Consensus 181 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~ 260 (355)
T cd05804 181 SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPD 260 (355)
T ss_pred CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCc
Confidence 1121 1233444555555556655555555532221 1111111 1 222223333322222211 111111000
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC------CCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHC
Q 005905 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLC------PNTITYSILLV--ACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 328 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~------p~~~t~~~ll~--a~~~~g~~~~a~~~~~~m~~~ 395 (670)
............++...|+.++|..+++.+...... ....+-..++. ++...|+.++|.+.+......
T Consensus 261 ~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 261 HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 001111123455556666777777777666542111 00111222222 345677777777777666553
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.61 E-value=0.00023 Score=74.22 Aligned_cols=226 Identities=12% Similarity=0.068 Sum_probs=145.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005905 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238 (670)
Q Consensus 163 ~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 238 (670)
.+...|++++|.+++++.... .+.|...+.. ...+.. .+..+.+.+.+.. .....+........+...+..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~---~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD---YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 456788999999999998875 1233344442 222322 4555555555544 112223334455566778899
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CccH--HHHHHHHHHHHhcCCHHHH
Q 005905 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGI--ISYSSLMGACSNAKNWQKA 315 (670)
Q Consensus 239 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~-~~~~--~~~~~li~~~~~~g~~~~A 315 (670)
.|++++|...+++..+.... +...+..+..++...|++++|...+....+... .++. ..|..+...+...|++++|
T Consensus 127 ~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 127 AGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999987643 567788888899999999999999999877542 2333 3456788899999999999
Q ss_pred HHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhCCChhHHHHH--HHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 316 LELYEHMKSIKL-KPTVSTM-N--ALITALCDGDQLPKTMEV--LSDMKSLGLC--PNTITYSILLVACERKDDVEVGLM 387 (670)
Q Consensus 316 ~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~A~~l--~~~m~~~g~~--p~~~t~~~ll~a~~~~g~~~~a~~ 387 (670)
..+|++...... .+..... + .++.-+...|....+.+. +......... ...........++...|+.++|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 999999864432 1122211 2 333444445544433333 2221111111 112222355667889999999999
Q ss_pred HHHHHHH
Q 005905 388 LLSQAKE 394 (670)
Q Consensus 388 ~~~~m~~ 394 (670)
.++.+..
T Consensus 286 ~L~~l~~ 292 (355)
T cd05804 286 LLAALKG 292 (355)
T ss_pred HHHHHHH
Confidence 9998876
No 81
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=0.00022 Score=78.15 Aligned_cols=341 Identities=14% Similarity=0.151 Sum_probs=235.7
Q ss_pred CCCchhhHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHH
Q 005905 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMER-KGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (670)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~ 100 (670)
+.|+.+-.++-.+++..+-..+-+++++++.- ...+..+.-+..+++-...+. +.....++..++..-|. -.+..
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa---~~ia~ 1056 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA---PDIAE 1056 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc---hhHHH
Confidence 55677777788888889999999999999863 334444555555444333332 22334444444432111 12334
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--NVKPDRVVFNALITACGQSGAVDRAFDVLA 178 (670)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 178 (670)
.+..++-+++|..+|++. ..+....+.||.-- +.+|.+.+ .-.-....|+.+..+-.+.|.+.+|++-|-
T Consensus 1057 iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie~i---~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKF-----DMNVSAIQVLIENI---GSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred HHhhhhHHHHHHHHHHHh-----cccHHHHHHHHHHh---hhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 566677889999999764 34555666666533 44554443 122345679999999999999999998875
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005905 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258 (670)
Q Consensus 179 ~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 258 (670)
+. -|...|..++..+.+.|.+++-.+.+....+..-.| .+=+.||-+|++.++..+..+++. -
T Consensus 1129 ka--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi~-------g 1191 (1666)
T KOG0985|consen 1129 KA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFIA-------G 1191 (1666)
T ss_pred hc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHhc-------C
Confidence 43 245689999999999999999999988877765554 345688999999999887666542 4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338 (670)
Q Consensus 259 p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 338 (670)
||......+-+-|...+.++.|.-+|.. +.-|..|...+...|++..|...-++. .+..||-.+-
T Consensus 1192 pN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVC 1256 (1666)
T ss_pred CCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHH
Confidence 6888888888999999999999887764 445677888888889999888765543 3778999998
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 005905 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI-PNLVMFKCIIGMCSR 413 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~r 413 (670)
.+|...+.+.-| +|....+-....-..-++.-|...|-+++...+++... |++ -..-+|+-|.-+|++
T Consensus 1257 faCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1257 FACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHHh
Confidence 898877765433 34444444555667778888999999998888876433 222 234456666666666
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.56 E-value=3.6e-06 Score=83.84 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY---SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338 (670)
Q Consensus 262 ~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 338 (670)
......+..|.+.++++.|.+.++.|.+.+ .|.... .+.+..+.-...+.+|..+|+++.+. +.+++.+.|.+.
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A 208 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence 344444444555555555555555544332 221111 11122222223455555555555432 234555555555
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 005905 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV-EVGLMLLSQAKE 394 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~ 394 (670)
.++...|++++|.+++.+..... +-|..|...++.++...|+. +.+.+++.++..
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 55555555555555555544321 22334444455555555555 444555555554
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=0.0012 Score=65.70 Aligned_cols=250 Identities=11% Similarity=0.093 Sum_probs=128.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005905 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIG-ALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228 (670)
Q Consensus 150 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 228 (670)
++-|+....++.+.+...|+.++|...|++.+. +.|+..+-. ...-.+.+.|+++....+...+.... +-+...
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~ 302 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASH 302 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhh
Confidence 344566666666666666666666666666653 344332211 11112335556666555555554332 122233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~ 308 (670)
|-.-........+++.|+.+-++-++.+.. +...|-.--..+...++.++|.-.|+...... +.+...|.-|++.|..
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHh
Confidence 333334444556666666666665554322 22233222334555666777766666665543 3456677777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 005905 309 AKNWQKALELYEHMKSIKLKPTVSTMNALI-TALC-DGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVACERKDDVEVG 385 (670)
Q Consensus 309 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 385 (670)
.|.+.+|..+-+.....- ..+..+.+.+. ..+. ....-++|..+++.-.. +.|+-. .-+.+...|...|..+++
T Consensus 381 ~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred hchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchH
Confidence 777776665544332210 12333333321 1111 12223556666665444 355533 233444456777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 386 LMLLSQAKEDGVIPNLVMFKCIIGMC 411 (670)
Q Consensus 386 ~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (670)
+.+++.... ..||....+.|-+.+
T Consensus 458 i~LLe~~L~--~~~D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 458 IKLLEKHLI--IFPDVNLHNHLGDIM 481 (564)
T ss_pred HHHHHHHHh--hccccHHHHHHHHHH
Confidence 777765554 346666666665554
No 84
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=8.4e-08 Score=61.12 Aligned_cols=32 Identities=28% Similarity=0.597 Sum_probs=15.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 326 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
|+.||..|||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=0.0011 Score=64.71 Aligned_cols=196 Identities=11% Similarity=0.026 Sum_probs=122.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCH
Q 005905 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (670)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~ 108 (670)
..-++.+.++..|+.+++--...+-. ....+...+...+...|++++|+..+..+. .++...+-.|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 44556788999999998877655421 222344445555567899999999987653 45666666666666667888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 005905 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185 (670)
Q Consensus 109 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 185 (670)
.+|.++-... +.+.-.-..|+....+.++-++... .+.....---+|.+..-..-.+.+|+++|.+....
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 8888775442 2233444456666667776555332 22222233334444444445689999999999865
Q ss_pred CCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005905 186 PVDPDHITIGALMK-ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238 (670)
Q Consensus 186 ~~~pd~~t~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 238 (670)
.|+-...+.-+. +|.+..-++-+.++++--.+. ++.++..-|.......+
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fR 231 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFR 231 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhh
Confidence 566666665443 567788888888888766653 34455555554444433
No 86
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=0.00012 Score=72.64 Aligned_cols=281 Identities=11% Similarity=0.030 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHH---hc---CCCCHHH-HHHHHHHHHhcCCHHHHHHHH
Q 005905 106 KDSEGAFQVLRLVQEAG-LKADCKLYTTLITTCAKSGKVDAMF---EN---VKPDRVV-FNALITACGQSGAVDRAFDVL 177 (670)
Q Consensus 106 g~~~~A~~~~~~m~~~g-~~pd~~~~~~li~~~~~~g~~~~~~---~~---~~~~~~~-~~~li~~~~~~g~~~~A~~l~ 177 (670)
++...|.+.+-.+.... ++.|+.....+.+++...|+.+++. +. +.|+.++ ...-.-.+.+.|+.+..-.+.
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~ 289 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALM 289 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHH
Confidence 34444444443333322 5556677778888888888876643 32 2333221 111122345667777777776
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005905 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257 (670)
Q Consensus 178 ~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 257 (670)
..+... .+-....|-.-+.......++..|+.+-++..+.+ +.+...|-.--..+.+.|++++|.-.|+..+....
T Consensus 290 ~~Lf~~---~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap 365 (564)
T KOG1174|consen 290 DYLFAK---VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP 365 (564)
T ss_pred HHHHhh---hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch
Confidence 666543 11222233333344445677888888888777765 44455555555677788888888888888766532
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHhCCCCCC-HHHH
Q 005905 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM-GACSN-AKNWQKALELYEHMKSIKLKPT-VSTM 334 (670)
Q Consensus 258 ~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~~~~~p~-~~~~ 334 (670)
-+...|.-|+..|...|+..+|..+-....+. ++.+..+.+.+. ..|.- ..--++|.+++++-... .|+ ....
T Consensus 366 -~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV 441 (564)
T KOG1174|consen 366 -YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAV 441 (564)
T ss_pred -hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHH
Confidence 26678888888888888888888776665543 234455554442 23322 23357888888876654 454 4456
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 335 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
+.+...+...|..++++.++++-.. ..||....+.|-+.+...+.+++|...|......+
T Consensus 442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 6777778888999999999988776 47898989999888888999999999998777643
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=0.00028 Score=72.69 Aligned_cols=368 Identities=13% Similarity=0.058 Sum_probs=202.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCC-HHHHHHHHHHHHcCCC
Q 005905 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPT-LSTFNMLMSVCASSKD 107 (670)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~-~~~y~~li~~~~~~g~ 107 (670)
--|+.+..|+++.|+.+|-+..... |.+.++++.=...+.+.+++++|+.=-.+-. .|+ ...|+-...++.-.|+
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhccc
Confidence 3467778999999999999998877 7787777777778888899998887654432 344 4579999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cCCC--------CHHHHHHHHHHH---------
Q 005905 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NVKP--------DRVVFNALITAC--------- 164 (670)
Q Consensus 108 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~~~--------~~~~~~~li~~~--------- 164 (670)
+++|+..|.+-++.. +.|...++-|..++.........|. ++.. ....|..++..+
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999999887753 3455667777777622211111111 0000 000011111000
Q ss_pred -HhcCCHHHHHHHH---------------------------------HHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 005905 165 -GQSGAVDRAFDVL---------------------------------AEMNAEVHPVDPDHITIGALMKACANAGQVDRA 210 (670)
Q Consensus 165 -~~~g~~~~A~~l~---------------------------------~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A 210 (670)
....++..|...+ .++..+. ...--..-...+.++..+..+++.|
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~-~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEER-RVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHH-HHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 0000000000000 0000000 0000112233344444444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhcCChHHHHHH
Q 005905 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL-------SALIDFAGHAGKVEAAFEI 283 (670)
Q Consensus 211 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-------~~li~~~~~~g~~~~A~~i 283 (670)
.+-|....... .+..-++..-.+|...|.+.++...-+...+.|-. ...-| ..+-.+|.+.++++.|...
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 44444444332 22222333334444444444433333333332211 01111 1111233333444444444
Q ss_pred HHHHHHCCCCcc------------------------H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 284 LQEAKNQGISVG------------------------I-ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338 (670)
Q Consensus 284 ~~~m~~~~~~~~------------------------~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 338 (670)
|.+.....-.|+ . .-...=...+.+.|++..|...|.++.... +-|...|..-.
T Consensus 321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRA 399 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRA 399 (539)
T ss_pred HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHH
Confidence 443332221221 1 111122455678999999999999998877 45889999999
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 339 TALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
.+|.+.|.+..|+.=-+...+. .|+ ...|..=..++....+++.|.+.|.+..+.. |+..- +++.+.|
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e---~~~~~~r 468 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAE---AIDGYRR 468 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHH---HHHHHHH
Confidence 9999999999999987777764 444 4445555556677889999999999888765 54433 4444444
No 88
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=2.1e-07 Score=59.30 Aligned_cols=32 Identities=25% Similarity=0.574 Sum_probs=22.3
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 291 GISVGIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
|+.||..+||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777665
No 89
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.46 E-value=0.00026 Score=68.65 Aligned_cols=327 Identities=16% Similarity=0.118 Sum_probs=196.2
Q ss_pred CCchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHH-HHHH
Q 005905 23 HDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTF-NMLM 99 (670)
Q Consensus 23 ~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y-~~li 99 (670)
.++...+..-+.++..|++.+|+.-|....+.+ |.+......-...+...|...-|+.-+.+.. .||-..- -.-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 345555666677777888888888888887766 5443322223334444455555554444432 3442211 1112
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHH--HHHHHHHhcCCHHHHHHHH
Q 005905 100 SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFN--ALITACGQSGAVDRAFDVL 177 (670)
Q Consensus 100 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~l~ 177 (670)
..+.+.|.+++|..=|+..++.. |+..+ ...++.+ +.+....|+ ..+..+.-.|+...|+...
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqsk----------l~~~~e~~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSK----------LALIQEHWVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHH----------HHhHHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 45667888888888888877763 32211 1111211 222222333 4456677788999999999
Q ss_pred HHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005905 178 AEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV 257 (670)
Q Consensus 178 ~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 257 (670)
..+.+. .+-|...|..-..+|...|.+..|+.-++...+.. ..+...+.-+-..+...|+.+.++...++.++.+
T Consensus 179 ~~llEi---~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld- 253 (504)
T KOG0624|consen 179 THLLEI---QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD- 253 (504)
T ss_pred HHHHhc---CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC-
Confidence 888864 23355566667788888999999988887777665 3455666667777888899999988888887763
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---H
Q 005905 258 IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST---M 334 (670)
Q Consensus 258 ~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~ 334 (670)
||....-. .| ..+.+..+.+..|.+ ....++|.++..-.+...+..+.-..+. +
T Consensus 254 -pdHK~Cf~---~Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~ 310 (504)
T KOG0624|consen 254 -PDHKLCFP---FY---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGF 310 (504)
T ss_pred -cchhhHHH---HH---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeee
Confidence 45432111 11 122222222222222 2345566666666666665533322333 3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 335 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
..+-.+|...|++.+|++.-.+... +.|| ..++.--..||.-...++.|+.-|+...+.+
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 3455566677888888888777776 4555 6677777777777777888887777766643
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.43 E-value=0.0015 Score=77.56 Aligned_cols=324 Identities=10% Similarity=-0.008 Sum_probs=174.0
Q ss_pred hhhhhHHHHHHHhhhCCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHHHh
Q 005905 72 KSQKAIKEAFRFFKLVPN----PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGL------KADC--KLYTTLITTCAK 139 (670)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~----~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~------~pd~--~~~~~li~~~~~ 139 (670)
...|.+..+.++++.++. .+..........+...|++++|..++....+.-- .+.. .....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 334566666666666531 1222223344455667888888888877654310 0111 112222334456
Q ss_pred cCCHHHHHh-------cCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-C--CHHHHHHHHHHHHHc
Q 005905 140 SGKVDAMFE-------NVK-PD----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD-P--DHITIGALMKACANA 204 (670)
Q Consensus 140 ~g~~~~~~~-------~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~-p--d~~t~~~li~~~~~~ 204 (670)
.|+++.+.. ... .+ ....+.+...+...|++++|...+.+......... + ...++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 677665332 111 11 12345555667778888888888777654211111 1 122344455567778
Q ss_pred CCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHHHHh
Q 005905 205 GQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKG--VIP--DEVFLSALIDFAGH 273 (670)
Q Consensus 205 g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p--~~~t~~~li~~~~~ 273 (670)
|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 8888888877665442 211 1 12234445556666788888888777764421 111 12334445556667
Q ss_pred cCChHHHHHHHHHHHHCC--CCccH---HH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhC
Q 005905 274 AGKVEAAFEILQEAKNQG--ISVGI---IS-YSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCDG 344 (670)
Q Consensus 274 ~g~~~~A~~i~~~m~~~~--~~~~~---~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~ 344 (670)
.|+.+.|...+....... ..... .. ....+..+...|+.+.|...+........... ...+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 788888887777764321 11100 00 01122344557788888877766543211111 11134455667777
Q ss_pred CChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 345 DQLPKTMEVLSDMKS----LGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 345 g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
|++++|..++++... .|..++ ..+...+..++...|+.++|...+.+..+.
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888877654 233322 234445555677888888888888777764
No 91
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00023 Score=69.25 Aligned_cols=368 Identities=12% Similarity=0.057 Sum_probs=208.1
Q ss_pred hhHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCC---------------
Q 005905 27 EQLHSYNRLI--RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN--------------- 89 (670)
Q Consensus 27 ~~~~~~~~l~--~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------------- 89 (670)
..+..|-+.| +.|++++|+..+.-+.+.+-.|..-.++ +.-...-.|.+.+|..+-...+.
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn--LAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN--LACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh--HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHh
Confidence 4566676666 7899999999999987765322222222 22122234666666655443321
Q ss_pred CCHH---H-----------HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHh------
Q 005905 90 PTLS---T-----------FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL-ITTCAKSGKVDAMFE------ 148 (670)
Q Consensus 90 ~~~~---~-----------y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l-i~~~~~~g~~~~~~~------ 148 (670)
.|.. + --+|.+.....-.+++|+.+|.+.+... |+-...|.- .-+|.+..-++-..+
T Consensus 135 ndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL 212 (557)
T KOG3785|consen 135 NDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYL 212 (557)
T ss_pred CcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 0110 1 1122223333345677888887777642 444444433 334455544443222
Q ss_pred -cCCCCHHHHHHHHHHHHh----------------cC-------------------CHHHHHHHHHHHhhCCCCCCCCHH
Q 005905 149 -NVKPDRVVFNALITACGQ----------------SG-------------------AVDRAFDVLAEMNAEVHPVDPDHI 192 (670)
Q Consensus 149 -~~~~~~~~~~~li~~~~~----------------~g-------------------~~~~A~~l~~~m~~~~~~~~pd~~ 192 (670)
.++.+...-|.......+ ++ .-+.|++++-.+.+ +-|.
T Consensus 213 ~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~----~IPE-- 286 (557)
T KOG3785|consen 213 RQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK----HIPE-- 286 (557)
T ss_pred HhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh----hChH--
Confidence 223333333333222221 11 12344444443332 2333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN-----CCSQTGDWEFACSVYDDMTKKGVIPDEVF-LSA 266 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~-----~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ 266 (670)
.-..++--|.+.+++.+|..+.+++.- ..|-......++. -........-|...|.-.-+.+..-|... -.+
T Consensus 287 ARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 223455568899999999888777642 1222222222221 11122235567777766655554444322 223
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhCC
Q 005905 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA-LITALCDGD 345 (670)
Q Consensus 267 li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g 345 (670)
+.+++.-..++++.+.++..+..--..-|...+ .+..+++..|++.+|+++|-.+....++ |..+|-+ |..+|.+++
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 444455556788888888877766545555555 4778999999999999999887654443 5666655 467889999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 346 QLPKTMEVLSDMKSLGLCPNTITYSILL-VACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 346 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
+++-|.+++-.+.. +.+..+...+| +-|.+.+.+--|-+.|+++.... |+++-|..--.+|..
T Consensus 443 kP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnWeGKRGACaG 506 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENWEGKRGACAG 506 (557)
T ss_pred CchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCccccCCccchHHH
Confidence 99999888766643 33445544444 46899999999999998887754 666655544444444
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.39 E-value=7.6e-05 Score=72.83 Aligned_cols=187 Identities=9% Similarity=-0.032 Sum_probs=116.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 005905 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP 226 (670)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 226 (670)
......+..+...|.+.|++++|...|+++... .|+. ..+..+..++...|++++|...|+.+.+.......
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 105 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD 105 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 456667778888889999999999999988764 3432 35667778888899999999999988875422111
Q ss_pred --HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccH
Q 005905 227 --EVYTIAINCCSQT--------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296 (670)
Q Consensus 227 --~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~ 296 (670)
.++..+..++.+. |++++|.+.|+.+.+.... +...+..+..... ... .. .
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~ 166 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------A 166 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------H
Confidence 2444555555544 6677788888877766432 2222221111100 000 00 0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKL--KPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 360 (670)
.....+...|.+.|++++|...|+...+... +.....+..+..++...|++++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112445567777777777777777765421 113456777777777777777777777776653
No 93
>PLN02789 farnesyltranstransferase
Probab=98.37 E-value=0.00049 Score=69.63 Aligned_cols=215 Identities=10% Similarity=-0.012 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHH-HHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI-TIGALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~-t~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
.+++.+-..+...++.++|+.++.++... .|+.. .|+.-..++...| ++++++..++.+.+.+ +.+..+|+..
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~l----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R 112 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRL----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHR 112 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHH
Confidence 35566667777788999999999999874 56544 4555555666667 6799999999998876 5566778866
Q ss_pred HHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc-
Q 005905 233 INCCSQTGDW--EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA- 309 (670)
Q Consensus 233 i~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~- 309 (670)
--.+.+.|+. ++++.+++++.+...+ |...|+...-++.+.|+++++++.+.++++.+ .-+..+|+.....+.+.
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcc
Confidence 6566666653 6788899999888765 78888888888888899999999999999887 44566777666555554
Q ss_pred --CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005905 310 --KNW----QKALELYEHMKSIKLKPTVSTMNALITALCDG----DQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378 (670)
Q Consensus 310 --g~~----~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 378 (670)
|.. +++.....++.... +-|...|+.+...+... +...+|.+.+.+....+ ..+......|++.|+.
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 222 45666666666654 34778888888888773 34466888888866532 3355666677777764
No 94
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.31 E-value=0.00041 Score=78.73 Aligned_cols=223 Identities=12% Similarity=0.053 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 227 (670)
+...|-..|.-..+.++.++|.+++++.... +.+- .-.|.++++.-..-|.-+...++|+++.+.. ....
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t---IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT---INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh---CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 4566777777777788888888888877653 3221 2346666666666677777777887776643 1235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-ccHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGAC 306 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~-~~~~~~~~li~~~ 306 (670)
+|..|...|.+.+.+++|.++|+.|.+.-- -....|...++.+.+..+-+.|..++.+..+.-.+ -.+....-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 677788888888888888888888876422 25567777777777777777788877777654211 1234445555666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCH
Q 005905 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDV 382 (670)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~ 382 (670)
.++|+.+.++.+|+...... +.-...|+..|..-.++|+.+.+..+|++....++.|-. ..|...|..=...|+-
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 67788888888888776554 235667888888888888888888888888777666643 3344444443344443
No 95
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.31 E-value=5e-05 Score=78.72 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=167.9
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005905 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241 (670)
Q Consensus 162 ~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 241 (670)
.-+.+.|++.+|.-.|+..+++. +-+...|.-|.......++-..|+..+.+..+.+ +.|..+.-+|.-.|...|.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd---P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD---PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC---hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 34678999999999999998862 3346678888888899999999999999999887 6678888889999999999
Q ss_pred HHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHH-HCCCCccHHHHHHHHHHHHhcCCH
Q 005905 242 WEFACSVYDDMTKKGVI--------PDEVFLSALIDFAGHAGKVEAAFEILQEAK-NQGISVGIISYSSLMGACSNAKNW 312 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~A~~i~~~m~-~~~~~~~~~~~~~li~~~~~~g~~ 312 (670)
-..|+..++.-+...++ ++..+-.. ........+.+..++|-++. ..+..+|..++..|.-.|--.|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999887654321 00000000 01111122334445555544 445458888889999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVACERKDDVEVGLMLLSQ 391 (670)
Q Consensus 313 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 391 (670)
++|.+.|+......+ -|...||-|-..++...+.++|+..|++..+ ++|+-+ ....|.-+|...|.+++|.+.|=.
T Consensus 447 draiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999999887753 3788999999999999999999999999988 578743 333455678999999999988855
Q ss_pred HH
Q 005905 392 AK 393 (670)
Q Consensus 392 m~ 393 (670)
.+
T Consensus 524 AL 525 (579)
T KOG1125|consen 524 AL 525 (579)
T ss_pred HH
Confidence 44
No 96
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=0.0014 Score=62.62 Aligned_cols=283 Identities=15% Similarity=0.129 Sum_probs=182.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHHHHH-HHHHHcC
Q 005905 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNML-MSVCASS 105 (670)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~l-i~~~~~~ 105 (670)
..+.-.|++..++++|++++..-.++. |.+..-...+.-.+....++..|-..++.+. .|...-|..- ...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 344557899999999999999988877 6666666666666667788999999888775 3554444332 3556677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHH---HHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS--GKVDA---MFENV--KPDRVVFNALITACGQSGAVDRAFDVLA 178 (670)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~--g~~~~---~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 178 (670)
+.+..|+++...|.+. |+...-..-+.+..+- +++.. ..+.. +-+..+.+.......+.|+++.|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 8888999988877653 2222211112222221 22211 22222 2344455555555668899999999999
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----------------------------HHHH
Q 005905 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP----------------------------EVYT 230 (670)
Q Consensus 179 ~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------------------------~~~~ 230 (670)
...+- .|..|- ..|+..+ +..+.|+++.|++...++.++|++..+ ..+|
T Consensus 169 aAlqv-sGyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN 245 (459)
T KOG4340|consen 169 AALQV-SGYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN 245 (459)
T ss_pred HHHhh-cCCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence 98876 366663 5666555 445678999999999999887753211 1233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
.-...+.+.|+++.|.+-+-.|.-+ .-..|.+|...+.-. -..+++....+-+..+...+ +....||..++-.||+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhh
Confidence 3334456778888888888777432 233466666554321 12345666666666666665 34567888888888888
Q ss_pred CCHHHHHHHHHH
Q 005905 310 KNWQKALELYEH 321 (670)
Q Consensus 310 g~~~~A~~~~~~ 321 (670)
.-++.|-.++.+
T Consensus 324 eyf~lAADvLAE 335 (459)
T KOG4340|consen 324 EYFDLAADVLAE 335 (459)
T ss_pred HHHhHHHHHHhh
Confidence 888888888765
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.26 E-value=0.0043 Score=73.54 Aligned_cols=291 Identities=9% Similarity=-0.026 Sum_probs=169.3
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh-------cCC-------CCH--HHHHHHHHHHH
Q 005905 102 CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------NVK-------PDR--VVFNALITACG 165 (670)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~-------~~~-------~~~--~~~~~li~~~~ 165 (670)
....|++..+...++.+.......+..........+...|+++++.. ... +.. .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 44456666666665544211111122222333444556677765432 111 111 11222334566
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHH
Q 005905 166 QSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKYNI---KGT--PEVYTIAINCC 236 (670)
Q Consensus 166 ~~g~~~~A~~l~~~m~~~~~~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~--~~~~~~li~~~ 236 (670)
..|++++|...+++..... . ..+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+
T Consensus 464 ~~g~~~~A~~~~~~al~~~-~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 464 NDGDPEEAERLAELALAEL-P-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred hCCCHHHHHHHHHHHHhcC-C-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 7899999999998876531 1 1121 2344555667789999999999887764311 111 23445566778
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCccHHHHHHHHHH
Q 005905 237 SQTGDWEFACSVYDDMTKK----GVI--P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISVGIISYSSLMGA 305 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~~~~~~~~~~li~~ 305 (670)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+.... +.......+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999988876542 211 1 2233445555677789999999888877543 111123445556677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHH
Q 005905 306 CSNAKNWQKALELYEHMKSIKLK-PTVSTM-----NALITALCDGDQLPKTMEVLSDMKSLGLCPNT---ITYSILLVAC 376 (670)
Q Consensus 306 ~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~ 376 (670)
+...|+++.|.+.++........ .....+ ...+..+...|+.+.|.+.+............ ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 88899999999988877532101 111111 11224455688899999888775542211111 1134555677
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 005905 377 ERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 377 ~~~g~~~~a~~~~~~m~~ 394 (670)
...|+.++|...+.....
T Consensus 702 ~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 702 ILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888999999999988765
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.0054 Score=64.19 Aligned_cols=145 Identities=15% Similarity=0.083 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHHHCCCCccHHHHHHHHHHHHhcCCH
Q 005905 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQ--------EAKNQGISVGIISYSSLMGACSNAKNW 312 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~--------~m~~~~~~~~~~~~~~li~~~~~~g~~ 312 (670)
.+..+.+++...-+....-...+.-.+++.....|+++.|.+++. .+.+.+..|. +..++...|.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCC
Confidence 456677777666655433234566677788889999999999999 5555555554 445678888888888
Q ss_pred HHHHHHHHHHHhC--CCCCCHHHHHHHH----HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 313 QKALELYEHMKSI--KLKPTVSTMNALI----TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386 (670)
Q Consensus 313 ~~A~~~~~~m~~~--~~~p~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 386 (670)
+.|..++.+.... .-.+.....++++ .--.++|+.++|..+++++.+. .++|..+...++.+|++. +++.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHH
Confidence 8888888765431 0012223333333 3344789999999999999985 378889999999998865 456666
Q ss_pred HHH
Q 005905 387 MLL 389 (670)
Q Consensus 387 ~~~ 389 (670)
.+-
T Consensus 512 ~l~ 514 (652)
T KOG2376|consen 512 SLS 514 (652)
T ss_pred HHh
Confidence 544
No 99
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.20 E-value=0.016 Score=62.59 Aligned_cols=333 Identities=14% Similarity=0.026 Sum_probs=200.1
Q ss_pred CchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 005905 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA-DCKLYTTL 133 (670)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~l 133 (670)
.++..++..+.-+....|++..+.+.|+... -.....|+.+-..+...|.-..|..+++.-....-.| |...+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 3566666666666677899999999998753 2445678888888888898888998887755432223 34444444
Q ss_pred HHHHHhc-CCHHHHHh----------c--CCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhhCCCCCCC
Q 005905 134 ITTCAKS-GKVDAMFE----------N--VKPDRVVFNALITACGQS-----------GAVDRAFDVLAEMNAEVHPVDP 189 (670)
Q Consensus 134 i~~~~~~-g~~~~~~~----------~--~~~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~~~~~~p 189 (670)
-..|.+. +.+++..+ + -......|-.+.-+|... ....++++.+++..+.+ +-.|
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCc
Confidence 4444433 33433222 0 012333444444444432 12457777888877653 4456
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-----------
Q 005905 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-GV----------- 257 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~----------- 257 (670)
+...|.++ -|+-.++++.|.+..++..+.+-..+...|..+.-.+.-.+++.+|+.+.+..... |.
T Consensus 479 ~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 479 LVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred hHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 55555443 45667788888888888888765677788888888888888888888887765433 11
Q ss_pred -------CCCHHHHHHHHHHHHh---------c--------------CChHHHHHHHHHH--------HHCC--------
Q 005905 258 -------IPDEVFLSALIDFAGH---------A--------------GKVEAAFEILQEA--------KNQG-------- 291 (670)
Q Consensus 258 -------~p~~~t~~~li~~~~~---------~--------------g~~~~A~~i~~~m--------~~~~-------- 291 (670)
..-..|...++..+-. . ++..++.+..+++ ...+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s 636 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSS 636 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcc
Confidence 0001122233322220 0 0111111111111 0011
Q ss_pred -C--Ccc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 005905 292 -I--SVG------IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362 (670)
Q Consensus 292 -~--~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 362 (670)
. .|+ ...|......+.+.++.++|...+.+..... .-....|......+...|..++|.+.|..... +
T Consensus 637 ~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--l 713 (799)
T KOG4162|consen 637 TVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--L 713 (799)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--c
Confidence 0 112 3456667777888888888887777766543 23455666666677788888888888887765 4
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHH--HHHHHHHCC
Q 005905 363 CPNT-ITYSILLVACERKDDVEVGLM--LLSQAKEDG 396 (670)
Q Consensus 363 ~p~~-~t~~~ll~a~~~~g~~~~a~~--~~~~m~~~g 396 (670)
.|+. ...+++...+.+.|+...+.. ++..+.+.+
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 5654 456677777788887777766 777777755
No 100
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.00013 Score=77.57 Aligned_cols=234 Identities=11% Similarity=0.078 Sum_probs=180.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 235 (670)
.--.+...+...|-..+|+.+|++.. .|..+|.+|+..|+..+|..+.....+ -+|++..|..+.++
T Consensus 400 ~q~~laell~slGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 33456677888999999999998874 466788899999999999999887776 37888999999998
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHH
Q 005905 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315 (670)
Q Consensus 236 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (670)
.....-+++|.++++....+ .-..+.....+.++++++.+.++.-.+.+ +....+|-.+..+..++++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 88888889999998875433 11122222234788999999999877765 55677888888889999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 316 LELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 316 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
.+.|..-.... +-+...||.+-.+|.+.|+-.+|...+.+..+.. .-+...|-..+-...+.|.+++|++.+.++.+.
T Consensus 539 v~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 539 VKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99999887664 3367889999999999999999999999998865 344445555555667899999999999888763
Q ss_pred C-CCCCHHHHHHHHHHHH
Q 005905 396 G-VIPNLVMFKCIIGMCS 412 (670)
Q Consensus 396 g-~~p~~~~~~~li~~~~ 412 (670)
. ...|..+..-++....
T Consensus 617 ~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 617 RKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred hhhcccchhhHHHHHHHH
Confidence 1 1236666666665543
No 101
>PLN02789 farnesyltranstransferase
Probab=98.17 E-value=0.0019 Score=65.44 Aligned_cols=207 Identities=11% Similarity=0.079 Sum_probs=150.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--h
Q 005905 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK--V 277 (670)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~--~ 277 (670)
+...++.++|+.++.++.+.+ +.+..+|+.--.++...| ++++++..++++.+...+ +..+|..---.+.+.|. .
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 344578889999999998876 556678887777777777 689999999999988765 55556655444555665 3
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CCh----hHH
Q 005905 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG---DQL----PKT 350 (670)
Q Consensus 278 ~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~----~~A 350 (670)
+.++.+++.+.+.. +-+..+|+....++.+.|+++++.+.++++.+.++. |...|+.....+.+. |.. +++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 67888998998876 567889999999999999999999999999988744 777888777666554 223 467
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 351 MEVLSDMKSLGLCPNTITYSILLVACERK----DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 351 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
++...++... .+-|...|+.+...+... +...+|..++.+..+.+ ..+......|++.|+.
T Consensus 203 l~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 7777676664 133556676666666652 34566888888776643 2345567778888765
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.15 E-value=0.00045 Score=64.98 Aligned_cols=115 Identities=10% Similarity=0.075 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHH-HHhcCC--HHHHHHH
Q 005905 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKN--WQKALEL 318 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~~~ 318 (670)
.+++...++...+.... |...|..+...|...|++++|...|+...+.. +.+..++..+..+ |...|+ .++|.++
T Consensus 55 ~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 55 PEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 33343334433333322 34444444444444444444444444444433 2233333333333 233333 2444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 319 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+++..+.+.. +...+..+...+.+.|++++|+..|+++.+
T Consensus 133 l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 133 IDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444443321 334444444444444444444444444443
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.14 E-value=0.00051 Score=73.80 Aligned_cols=239 Identities=15% Similarity=0.209 Sum_probs=142.1
Q ss_pred CHHHHHHHHH--HHHhcCCHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--------CCCCHHH
Q 005905 126 DCKLYTTLIT--TCAKSGKVDAMFENV--KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP--------VDPDHIT 193 (670)
Q Consensus 126 d~~~~~~li~--~~~~~g~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--------~~pd~~t 193 (670)
|..|-..+++ .|...|+.|.+|..+ -.+..+|..|.+.|.+..+.+-|.-.+-.|... .| -.|+ .+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~a-RgaRAlR~a~q~~~-e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNA-RGARALRRAQQNGE-ED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhh-hhHHHHHHHHhCCc-ch
Confidence 4444444443 244456666666543 245555666666666665555555554444321 00 0121 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
=.-+.-.....|.+++|..+|.+.++.+ .|=..|...|.|++|.++-+.=-...+ ..||.....-+..
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEA 870 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHh
Confidence 1111222346677888888887776643 344556667888888877654322222 2345444444555
Q ss_pred cCChHHHHHHHHHH----------HHCC---------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005905 274 AGKVEAAFEILQEA----------KNQG---------ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334 (670)
Q Consensus 274 ~g~~~~A~~i~~~m----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 334 (670)
.++.+.|++.|+.. .... -..|...|..-.......|+++.|+.+|...+ -|
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DY 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hh
Confidence 56666666655432 1111 12345666667777778899999999988776 26
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393 (670)
Q Consensus 335 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 393 (670)
-+++...|-.|+.++|-++-++ .-|......+.+.|...|++.+|..+|-+..
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6778888888999998887765 2355556677888888999999998887654
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.14 E-value=0.00066 Score=63.86 Aligned_cols=156 Identities=13% Similarity=0.121 Sum_probs=111.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 240 (670)
+..|...|+++.+..-.+.+.. |. . .+...++.+++...++...+.+ +.+...|..+...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~------~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD------PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC------cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCC
Confidence 3567777777776444433321 11 0 1122566677777777777766 677888888888899999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 005905 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGK--VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~g~--~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (670)
++++|...|++..+.... +...+..+..+ +...|+ .++|.+++++..+.+ +.+..++..+...+.+.|++++|..
T Consensus 88 ~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 88 DYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHH
Confidence 999999999888887654 66777777765 356666 488999999988876 5567788888888889999999999
Q ss_pred HHHHHHhCCCCCCHHHH
Q 005905 318 LYEHMKSIKLKPTVSTM 334 (670)
Q Consensus 318 ~~~~m~~~~~~p~~~~~ 334 (670)
.|+++.+.. +|+..-+
T Consensus 166 ~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 166 LWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHhhC-CCCccHH
Confidence 999887765 3444333
No 105
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.12 E-value=0.00056 Score=77.72 Aligned_cols=210 Identities=13% Similarity=0.051 Sum_probs=169.2
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 188 DPD-HITIGALMKACANAGQVDRAREVYKMIHKY-NIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262 (670)
Q Consensus 188 ~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 262 (670)
.|| ...|...|......++.+.|++++++.... ++.- -..+|.++++.-..-|.-+...++|++..+..- .-.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHH
Confidence 344 567888888899999999999999888663 2211 235788888888888888999999999987631 245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 005905 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITAL 341 (670)
Q Consensus 263 t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~ 341 (670)
.|..|...|.+.+..++|-++++.|.++- .-...+|...++.+.+..+-+.|..++.+..+.=++ -.+....-.+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78899999999999999999999998763 356789999999999999999999999987765222 1233444556666
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005905 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401 (670)
Q Consensus 342 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 401 (670)
.++|+.+++..+|+..... .+--...|+.+++.-.++|+.+.+..+|++.+..++.|..
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 7899999999999999875 3445678999999999999999999999999998877653
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=0.0005 Score=71.53 Aligned_cols=219 Identities=16% Similarity=0.127 Sum_probs=130.7
Q ss_pred cCCCchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC---CCCCHHHHHH
Q 005905 21 YAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNM 97 (670)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~y~~ 97 (670)
+.-.+.|+..-. .|+++|++.+|.-+|+.....+ |.+...-..+.......++=..|+..+++. .+.|....-.
T Consensus 282 ~~~~pdPf~eG~-~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLma 358 (579)
T KOG1125|consen 282 YIDHPDPFKEGC-NLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMA 358 (579)
T ss_pred ccCCCChHHHHH-HHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHH
Confidence 333445555544 4567888999999999998887 666655555555555555555566665543 4556777778
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCC-------------------CCHHHHHHHHHHHHhcCCHHHHHh-cCCCCHHHH
Q 005905 98 LMSVCASSKDSEGAFQVLRLVQEAGLK-------------------ADCKLYTTLITTCAKSGKVDAMFE-NVKPDRVVF 157 (670)
Q Consensus 98 li~~~~~~g~~~~A~~~~~~m~~~g~~-------------------pd~~~~~~li~~~~~~g~~~~~~~-~~~~~~~~~ 157 (670)
|.-.|...|.-..|+..++.-+....+ ++...+.-+-..|. +.+.+ ...+|..+.
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fL-----eaa~~~~~~~DpdvQ 433 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFL-----EAARQLPTKIDPDVQ 433 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHH-----HHHHhCCCCCChhHH
Confidence 888888888888888888777654211 11111211111111 11111 123556666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236 (670)
Q Consensus 158 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (670)
+.|.-.|--.|++++|++.|+..... +| |...||-|...++...+.++|+.-|.+.++.. +.-+.++.-|.-.|
T Consensus 434 ~~LGVLy~ls~efdraiDcf~~AL~v----~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 434 SGLGVLYNLSGEFDRAVDCFEAALQV----KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISC 508 (579)
T ss_pred hhhHHHHhcchHHHHHHHHHHHHHhc----CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhh
Confidence 66666666677777777777766653 34 34566666666777677777777777666543 11223333344456
Q ss_pred HhcCCHHHHHHHHHHH
Q 005905 237 SQTGDWEFACSVYDDM 252 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m 252 (670)
...|.+++|.+.|-..
T Consensus 509 mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 509 MNLGAYKEAVKHLLEA 524 (579)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 6667777766666443
No 107
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.11 E-value=0.0013 Score=70.62 Aligned_cols=81 Identities=14% Similarity=0.166 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC----CCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 005905 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV----PNPTLSTFNMLMSVCASSKDSEGAFQV 114 (670)
Q Consensus 39 g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~y~~li~~~~~~g~~~~A~~~ 114 (670)
....++++.+++..+.+...+...++ +.-.++..++++.|.+..++. ..-+...|..+.-.+...+++.+|+.+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~v 535 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDV 535 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHH
Confidence 35567899999999888433333333 334456678888888776543 456788999999999999999999999
Q ss_pred HHHHHHc
Q 005905 115 LRLVQEA 121 (670)
Q Consensus 115 ~~~m~~~ 121 (670)
.+.....
T Consensus 536 vd~al~E 542 (799)
T KOG4162|consen 536 VDAALEE 542 (799)
T ss_pred HHHHHHH
Confidence 8876653
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.09 E-value=0.00058 Score=66.59 Aligned_cols=187 Identities=9% Similarity=-0.042 Sum_probs=121.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HH
Q 005905 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VF 263 (670)
Q Consensus 189 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t 263 (670)
.....+..+...+...|+++.|...|+++.... +.+. .++..+..+|.+.|++++|...|+++.+....... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345567777788888999999999998887754 3222 46677788888899999999999988876442222 13
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005905 264 LSALIDFAGHA--------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMN 335 (670)
Q Consensus 264 ~~~li~~~~~~--------g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 335 (670)
+..+..++... |+.++|.+.++.+.+.. +-+...+..+..... .. .... ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~------~~~~--------~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LR------NRLA--------GKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HH------HHHH--------HHHH
Confidence 33444444443 56777777777776653 212222221111100 00 0000 0112
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 336 ALITALCDGDQLPKTMEVLSDMKSLGL-CP-NTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 336 ~li~~~~~~g~~~~A~~l~~~m~~~g~-~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
.+...|.+.|++.+|+..|++....-- .| ....+..+..++.+.|+.++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455678899999999999999887411 12 3567888899999999999999999887654
No 109
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.002 Score=69.44 Aligned_cols=248 Identities=16% Similarity=0.199 Sum_probs=147.3
Q ss_pred CHHHHHHHH--HHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh----------------c-CC
Q 005905 91 TLSTFNMLM--SVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE----------------N-VK 151 (670)
Q Consensus 91 ~~~~y~~li--~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~----------------~-~~ 151 (670)
|..|-..++ +.|...|+.+.|.+-.+.++ +..+|..|.++|.+..++|-+.- . -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 444444444 23455566665555444332 23456666666666555442110 0 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
++ ..-.-+.......|.+++|..+|.+-++ |..|=+.|-..|.+++|.++-+.--+..+ ..||..
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~ 863 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR-----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYN 863 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHH
Confidence 21 1111222233466778888888877654 22334456667788888776543222222 245555
Q ss_pred HHHHHHhcCCHHHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005905 232 AINCCSQTGDWEFACSVYDDM----------TKKG---------VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m----------~~~g---------~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~ 292 (670)
-...+-..+|.+.|++.|++. +... -..|...|.--.......|+.+.|+.+|....+
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 555555566666666666532 1111 112445555555666677899999988887654
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372 (670)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 372 (670)
|-+++...|-.|+.++|-++-++- .|....-.|...|-..|++.+|..+|.+.+ +|...
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnA 999 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNA 999 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHH
Confidence 457888888999999999887753 366677788999999999999999998764 45566
Q ss_pred HHHHHhcCCHH
Q 005905 373 LVACERKDDVE 383 (670)
Q Consensus 373 l~a~~~~g~~~ 383 (670)
|+.|...+.-+
T Consensus 1000 IRlcKEnd~~d 1010 (1416)
T KOG3617|consen 1000 IRLCKENDMKD 1010 (1416)
T ss_pred HHHHHhcCHHH
Confidence 66665444433
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=0.00051 Score=73.31 Aligned_cols=220 Identities=12% Similarity=-0.014 Sum_probs=132.8
Q ss_pred CchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 58 DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTC 137 (670)
Q Consensus 58 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 137 (670)
|+.-.....+..++.+.|-...|+.+|++. ..|.-+|-.|...|+..+|..+..+-++ -+||...|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhc
Confidence 444445556666777777888888887763 4566777777777877777777766666 357777777766655
Q ss_pred HhcCCHHHHHhc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005905 138 AKSGKVDAMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216 (670)
Q Consensus 138 ~~~g~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~ 216 (670)
....-++++.+- -..+...-..+.....++++++++.+.|+.-.+.. + -...+|-....+..++++++.|.+.|..
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-p--lq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-P--LQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-c--cchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 444444444431 11111111111122223566777777776655542 1 2234666666666677777777777766
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005905 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289 (670)
Q Consensus 217 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~ 289 (670)
..... +.+...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++..
T Consensus 545 cvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 66543 445566777777777777777777777777666633 444555555556667777777776666643
No 111
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0027 Score=59.98 Aligned_cols=119 Identities=15% Similarity=0.081 Sum_probs=55.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 005905 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ 346 (670)
Q Consensus 271 ~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 346 (670)
..+..+.+-|.+.++.|.+-. +..|.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.|-+..++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 344445555555555554432 22333333333322 23455555555555432 24555555555555555566
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 005905 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEV-GLMLLSQAKE 394 (670)
Q Consensus 347 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~-a~~~~~~m~~ 394 (670)
+++|..++++..... .-+..|...++.+-.+.|...+ ..+.+.+++.
T Consensus 223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 666666555555431 2234444444444444444322 2334444443
No 112
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.06 E-value=0.0033 Score=66.95 Aligned_cols=109 Identities=19% Similarity=0.325 Sum_probs=69.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 312 (670)
|.+-.....|.+|+.+++.+..... -..-|..+.+-|+..|+++.|.++|-+. ..++-.|.||.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 3444556677778887777776643 2335667777888888888888877643 2345677788888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 005905 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354 (670)
Q Consensus 313 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 354 (670)
+.|.++-++.. |.......|-+-..-+-.+|++.+|.+++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 88877766543 22334444544444455566666655554
No 113
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=6.5e-06 Score=53.05 Aligned_cols=33 Identities=30% Similarity=0.665 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 005905 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365 (670)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 365 (670)
+||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677777777777777777777777777777776
No 114
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.05 E-value=0.0014 Score=73.95 Aligned_cols=130 Identities=14% Similarity=0.082 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHHHcCCHHHHHHH-----------------
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQVDRAREV----------------- 213 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t-~~~li~~~~~~g~~~~A~~~----------------- 213 (670)
.+...|..|+..|...+++++|.++.+...+. .|+... |-.+...+...++++++..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~----~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE----HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEH 104 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHH
Confidence 35667778888888888888888888766553 444332 22222244455554444333
Q ss_pred -HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005905 214 -YKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289 (670)
Q Consensus 214 -~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~ 289 (670)
+..|... ..+..++-.+..+|-+.|+.++|..+++++++.... |....+.+...|+.. ++++|.+++.....
T Consensus 105 ~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 105 ICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 1111111 111233444555555555555555555555555422 455555555555555 55555555554433
No 115
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.05 E-value=0.0014 Score=69.63 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=93.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 240 (670)
|.+......+.+|+.+++.++.. ..-..-|..+...|+..|+++.|.++|-+. ..++-.|.+|.+.|
T Consensus 739 ieaai~akew~kai~ildniqdq----k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ----KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh----ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccc
Confidence 44556677889999999888764 223345777888899999999999998653 23566788999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (670)
+|+.|.++-.+. .|.......|.+-..-.-..|++.+|.++|-.+ | .|+ ..|.||-+.|..+...++.+
T Consensus 806 kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 999998887654 344444555655555566777777777766433 1 232 34566777777776666655
Q ss_pred H
Q 005905 321 H 321 (670)
Q Consensus 321 ~ 321 (670)
+
T Consensus 875 k 875 (1636)
T KOG3616|consen 875 K 875 (1636)
T ss_pred H
Confidence 4
No 116
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=0.007 Score=62.15 Aligned_cols=157 Identities=13% Similarity=0.088 Sum_probs=94.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH
Q 005905 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (670)
.+...|++++|+..++.+...-.. |...+....+.+...++..+|.+.++.+.... +......-.+..+|.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHH
Confidence 344566677777777776655322 44555555666677777777777777766653 1224455566667777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 315 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
|..+++...... +-|...|..|..+|...|+..+|..-.-+ ++...|+++.|...+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 777776665443 33666777777777777776666554433 34456777777777766665
Q ss_pred C--CCCCCHHHHHHHHHHHH
Q 005905 395 D--GVIPNLVMFKCIIGMCS 412 (670)
Q Consensus 395 ~--g~~p~~~~~~~li~~~~ 412 (670)
. ...|+-.-+...|+...
T Consensus 454 ~~~~~~~~~aR~dari~~~~ 473 (484)
T COG4783 454 QVKLGFPDWARADARIDQLR 473 (484)
T ss_pred hccCCcHHHHHHHHHHHHHH
Confidence 3 22355555555555443
No 117
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=0.018 Score=59.74 Aligned_cols=362 Identities=15% Similarity=0.136 Sum_probs=210.2
Q ss_pred HHhhhhhHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHH
Q 005905 70 VCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC-KLYTTLITTCAKSGKVDA 145 (670)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~---~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~ 145 (670)
+....|+++.|+..|... .++|.+.|..=..+|++.|++++|++=-.+-.+ +.|+- .-|+-+-.++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 345678888888888643 356778888888888888988888775555444 45663 457777777777888887
Q ss_pred HHh----cC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHH--HhhCCCCCCCCH--------HHHHHHHHHHH------
Q 005905 146 MFE----NV---KPDRVVFNALITACGQSGAVDRAFDVLAE--MNAEVHPVDPDH--------ITIGALMKACA------ 202 (670)
Q Consensus 146 ~~~----~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~--m~~~~~~~~pd~--------~t~~~li~~~~------ 202 (670)
++. |+ +.|...++-+..++.... ++.+.|.. |.. ++..+. ..|..++..+-
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~---~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAYLEDY---AADQLFTKPYFHE---KLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhhhHHH---HhhhhccCcHHHH---HhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 665 22 335666777777762110 00111100 000 000000 11222222211
Q ss_pred ----HcCCHHHHHHHHHHH-----HHcC-------CCC------------C----------HHHHHHHHHHHHhcCCHHH
Q 005905 203 ----NAGQVDRAREVYKMI-----HKYN-------IKG------------T----------PEVYTIAINCCSQTGDWEF 244 (670)
Q Consensus 203 ----~~g~~~~A~~~~~~m-----~~~~-------~~~------------~----------~~~~~~li~~~~~~g~~~~ 244 (670)
.-.++..|.-.+... ...+ ..| + ..-...+.++..+..++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 100111111111100 0000 011 0 0124557777788889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHH-------HHHHHHHHhcCCHHHHHH
Q 005905 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY-------SSLMGACSNAKNWQKALE 317 (670)
Q Consensus 245 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~-------~~li~~~~~~g~~~~A~~ 317 (670)
|.+-+....+.. -+..-++..-.+|...|.+.+....-....+.|-. ...-| ..+..+|.+.++++.|..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 999999988776 35566677777888888887777766666665521 12222 223446777788999999
Q ss_pred HHHHHHhCCCCCCHHHH-------------------------HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 318 LYEHMKSIKLKPTVSTM-------------------------NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372 (670)
Q Consensus 318 ~~~~m~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 372 (670)
.|.+.....-.|+..+= -.=...+.+.|++..|+..|.+++... +-|...|...
T Consensus 320 ~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNR 398 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNR 398 (539)
T ss_pred HHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHH
Confidence 99886654333332221 111345678999999999999999864 4567889898
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHH--HHHHHHHHhhHHHHHHhHHHhhhhcCCCccchhhhHHHHHHHHHH
Q 005905 373 LVACERKDDVEVGLMLLSQAKEDGVIPNL-VMF--KCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYRE 449 (670)
Q Consensus 373 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~--~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~ 449 (670)
.-+|.+.|.+..|+.-.+..++.. |+- ..| ...+--..++|++|.+....-...++. ..+++.-|++
T Consensus 399 Aac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~--------~~e~~~~~~r 468 (539)
T KOG0548|consen 399 AACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS--------NAEAIDGYRR 468 (539)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--------hHHHHHHHHH
Confidence 889999999999999877776652 432 111 111111123566666554433333321 2356666666
Q ss_pred HHHc
Q 005905 450 AIVA 453 (670)
Q Consensus 450 m~~~ 453 (670)
.+..
T Consensus 469 c~~a 472 (539)
T KOG0548|consen 469 CVEA 472 (539)
T ss_pred HHHH
Confidence 6664
No 118
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.96 E-value=0.035 Score=57.76 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNAKNWQKALELYE 320 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (670)
.+....+++++...-..--..+|...+....+..-+..|..+|.++.+.+..+ ++.+++++|..|| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45556666666544322233567777887778888888888888888877666 7778888887776 467788888888
Q ss_pred H-HHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 005905 321 H-MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT--ITYSILLVACERKDDVEVGLMLLSQAKED-G 396 (670)
Q Consensus 321 ~-m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-g 396 (670)
. ++..| -+..--+..+.-+...++-..|..+|++....++.|+. ..|..+|.-=+.-|++..+.++-+++... .
T Consensus 426 LGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 5 33332 23333456677777788888888888888877666653 67888888778888888888877665542 2
Q ss_pred --CCCCHHHHHHHHHHH
Q 005905 397 --VIPNLVMFKCIIGMC 411 (670)
Q Consensus 397 --~~p~~~~~~~li~~~ 411 (670)
..|...+-..+++.|
T Consensus 504 ~~qe~~~~~~~~~v~RY 520 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRY 520 (656)
T ss_pred hhhcCCCChHHHHHHHH
Confidence 333333344445544
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.96 E-value=0.013 Score=60.35 Aligned_cols=191 Identities=17% Similarity=0.090 Sum_probs=140.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005905 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230 (670)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 230 (670)
.|+...+...+.+......-..+..++..-.+. .-...-|..-+ .+...|+++.|+..++.+.+. .+.|+..+.
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~ 344 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR----GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAA-QPDNPYYLE 344 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc----cchHHHHHHHH-HHHHhcccchHHHHHHHHHHh-CCCCHHHHH
Confidence 356666666666555544444443443333221 11122343333 345789999999999998874 467788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
...+.+.+.++..+|.+.++++.... |+ ....-.+..++.+.|++.+|..+++...... +-|+..|..|..+|...
T Consensus 345 ~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~ 421 (484)
T COG4783 345 LAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAEL 421 (484)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHh
Confidence 88999999999999999999999874 44 5566678889999999999999999988775 77899999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 005905 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369 (670)
Q Consensus 310 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 369 (670)
|+..+|..-..+ +|...|+++.|+..+....+. ++++..++
T Consensus 422 g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 422 GNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred CchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh-ccCCcHHH
Confidence 999988765544 456689999999999888775 34444444
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.96 E-value=0.00049 Score=61.12 Aligned_cols=90 Identities=11% Similarity=-0.024 Sum_probs=40.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 005905 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347 (670)
Q Consensus 268 i~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 347 (670)
..++...|++++|...|+.+.... +.+...+..+..++...|++++|...|+...... +.+...+..+..++...|+.
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 333444444444444444444433 2334444444444444444444444444444433 12444444444444444444
Q ss_pred hHHHHHHHHHHh
Q 005905 348 PKTMEVLSDMKS 359 (670)
Q Consensus 348 ~~A~~l~~~m~~ 359 (670)
++|+..|+....
T Consensus 109 ~eAi~~~~~Al~ 120 (144)
T PRK15359 109 GLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.0012 Score=62.36 Aligned_cols=125 Identities=19% Similarity=0.120 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
...+..+....+.|++.+|+..|.+.... -++|...|+.+.-+|.+.|+++.|..-|.+..+.. +.++..+|-|.-
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgm 176 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARL---APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGM 176 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhcc---CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHH
Confidence 33333444444444444444444444332 13334444444444444444444444444444332 222333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005905 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~ 284 (670)
.|.-.|+.+.|..++......+.. |...-..+.-+....|+++.|..+.
T Consensus 177 s~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 444444444444444444333322 3333333333444444444444433
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.94 E-value=0.0023 Score=60.43 Aligned_cols=126 Identities=11% Similarity=-0.015 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~ 306 (670)
...+..+....+.|++..|...|++..... ++|..+|+.+--+|.+.|+.+.|..-|.+..+.. .-+...+|.|.-.|
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~ 178 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSL 178 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHH
Confidence 333444444444555555555554444332 2344444444444455555555544444444432 22233344444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 005905 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355 (670)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 355 (670)
.-.|+.+.|..++......+ ..|...-..+.-.....|++++|..+-.
T Consensus 179 ~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 44455555555544444332 1233334444444444455544444433
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=0.0038 Score=70.56 Aligned_cols=233 Identities=9% Similarity=0.080 Sum_probs=115.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 005905 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKL-YTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSG 168 (670)
Q Consensus 90 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g 168 (670)
.+...|..|+..+...+++++|.++.+...+. .|+... |-.+...+...++.+.+ ... .++.......
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~--------~lv-~~l~~~~~~~ 97 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDS--------NLL-NLIDSFSQNL 97 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhh--------hhh-hhhhhccccc
Confidence 34555666666666666666666666655443 233322 22222234444443221 001 3344444444
Q ss_pred CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 169 AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 169 ~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
++.-...++..|..- .-+...+..+..+|-+.|+.++|..+|+++.+.+ +.|+.+.|-+...|+.. ++++|.++
T Consensus 98 ~~~~ve~~~~~i~~~----~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 98 KWAIVEHICDKILLY----GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred chhHHHHHHHHHHhh----hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 443333333333321 2233345555555556666666666666665555 44555555555555555 55666555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHH-----HhcCChHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFA-----GHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~-----~~~g~~~~A~~i~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
+.+....-+ +..-|+.+.... ....+.+.-..+.+.+... +..--+.++--+-..|-..++++++..+++.+
T Consensus 172 ~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~i 249 (906)
T PRK14720 172 LKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKI 249 (906)
T ss_pred HHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 555443311 001111111100 0112222333333333332 22333455556667788888899999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHH
Q 005905 323 KSIKLKPTVSTMNALITALC 342 (670)
Q Consensus 323 ~~~~~~p~~~~~~~li~~~~ 342 (670)
.+... .|.....-++.+|.
T Consensus 250 L~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 250 LEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred HhcCC-cchhhHHHHHHHHH
Confidence 88763 47777777887776
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.92 E-value=0.00072 Score=60.06 Aligned_cols=86 Identities=12% Similarity=-0.053 Sum_probs=32.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005905 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280 (670)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 280 (670)
+...|++++|...|+...... +.+..+|..+..++.+.|++++|...|+........ +...+..+..++...|+.++|
T Consensus 34 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHHHH
Confidence 333444444444444333332 223333333444444444444444444443333221 333333333333333444444
Q ss_pred HHHHHHHH
Q 005905 281 FEILQEAK 288 (670)
Q Consensus 281 ~~i~~~m~ 288 (670)
...|+...
T Consensus 112 i~~~~~Al 119 (144)
T PRK15359 112 REAFQTAI 119 (144)
T ss_pred HHHHHHHH
Confidence 44443333
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0079 Score=56.91 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=43.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005905 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276 (670)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 276 (670)
+.+..+++.|.+.++.|.+.+ +..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+-...++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 344455555555555555432 12333333333322 33455555555555442 23455555555555555555
Q ss_pred hHHHHHHHHHHHHCC
Q 005905 277 VEAAFEILQEAKNQG 291 (670)
Q Consensus 277 ~~~A~~i~~~m~~~~ 291 (670)
+++|..++++...+.
T Consensus 223 ~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHHHHHHHhcc
Confidence 555555555555544
No 126
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.91 E-value=0.002 Score=72.03 Aligned_cols=182 Identities=9% Similarity=0.090 Sum_probs=127.1
Q ss_pred cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 005905 149 NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227 (670)
Q Consensus 149 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 227 (670)
....+...+-.|.....+.|.+++|..+++...+ +.||. .....+...+.+.+++++|...++...... +.+..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~----~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~ 155 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ----RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAR 155 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh----hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHH
Confidence 3456677888888888888888888888888876 36664 445567778888888888888888888766 56677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~ 307 (670)
..+.+..++.+.|++++|..+|++....+.. +..++..+..++-..|+.++|...|+...+.. .+....|+.++
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~---- 229 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL---- 229 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH----
Confidence 7788888888888888888888888875432 46778888888888888888888888887653 34445555443
Q ss_pred hcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 005905 308 NAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCD 343 (670)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~ 343 (670)
+++..-...++++.-. |....+.+...+|.-|.+
T Consensus 230 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 230 --VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred --HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 2333444445544322 222234445555555544
No 127
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=1.5e-05 Score=51.02 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 005905 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCP 364 (670)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 364 (670)
+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44555555555555555555555555544444
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.87 E-value=2.4e-05 Score=50.33 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH
Q 005905 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127 (670)
Q Consensus 94 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 127 (670)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999983
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.87 E-value=0.00063 Score=59.75 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=9.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 299 YSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
+..+...|.+.|++++|..+|+..
T Consensus 54 ~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 54 WLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 130
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.86 E-value=2.3e-05 Score=50.14 Aligned_cols=33 Identities=33% Similarity=0.664 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 005905 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125 (670)
Q Consensus 93 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 125 (670)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.83 E-value=0.011 Score=66.03 Aligned_cols=131 Identities=7% Similarity=-0.031 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005905 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA 340 (670)
Q Consensus 261 ~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 340 (670)
...+..|.....+.|.+++|..+++...+.. +-+......+...+.+.+++++|...+++.....+ -+....+.+..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~~~~~~~~~a~~ 163 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-SSAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-CCHHHHHHHHHH
Confidence 4444444444444455555555544444432 22233333444444445555555555444444331 133334444444
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 341 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+.+.|++++|..+|++.... .+-+..++..+-.++...|+.++|...|+...+
T Consensus 164 l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555554442 111234444444444444555555555544443
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.81 E-value=0.00097 Score=58.53 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=41.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005905 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275 (670)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 275 (670)
.+...+...|++++|.+.|+.+...+ +.+...|..+...|.+.|++++|..+|++..+.+.. +..++..+...+...|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcC
Confidence 33344444555555555554444433 334444444444554555555555555444443321 3333333444444444
Q ss_pred ChHHHHHHHHHHHH
Q 005905 276 KVEAAFEILQEAKN 289 (670)
Q Consensus 276 ~~~~A~~i~~~m~~ 289 (670)
+.+.|...++...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444443
No 133
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.74 E-value=0.00036 Score=72.28 Aligned_cols=119 Identities=13% Similarity=0.166 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 260 DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337 (670)
Q Consensus 260 ~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 337 (670)
+...+..+++.+....+++.+..++....... ...-..|..++|+.|.+.|..+.+..++..=...|+-||..|+|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 44444445555555555555555554444331 1111223345555555555555555555555555555555555555
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005905 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER 378 (670)
Q Consensus 338 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 378 (670)
|+.+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555555554444555555544444443
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.029 Score=52.78 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHhhC-CCC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005905 168 GAVDRAFDVLAEMNAE-VHP-VDPDHI-TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244 (670)
Q Consensus 168 g~~~~A~~l~~~m~~~-~~~-~~pd~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 244 (670)
.+.++.++++.++... ..+ ..++.. .|..++-+....|+.+.|...++.+..+- +.+..+--.-.-.+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4567777777766543 112 334433 34445556667777777777777766543 3333322222222344567777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 245 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
|.++++.+++.+.. |.+++-.=+...-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 105 A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 77777777766532 5555554444444455544555444444433 345555666666666666666666655555554
Q ss_pred C
Q 005905 325 I 325 (670)
Q Consensus 325 ~ 325 (670)
.
T Consensus 183 ~ 183 (289)
T KOG3060|consen 183 I 183 (289)
T ss_pred c
Confidence 3
No 135
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.023 Score=54.51 Aligned_cols=299 Identities=10% Similarity=0.072 Sum_probs=165.9
Q ss_pred hhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHH
Q 005905 72 KSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL-ITTCAKSGKVDAMF 147 (670)
Q Consensus 72 ~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l-i~~~~~~g~~~~~~ 147 (670)
.+..++++|++++..-. +.+......|..+|....++..|-..|+.+... .|...-|..- ...+-+.+.+..++
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHH
Confidence 44567888888865432 346677888888889999999999999988775 4554443211 11222333333322
Q ss_pred h---cCCCCHHHHHHHH--H--HHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005905 148 E---NVKPDRVVFNALI--T--ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220 (670)
Q Consensus 148 ~---~~~~~~~~~~~li--~--~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 220 (670)
. .+..+....+..+ . ..-..+++..+..+.++...+ -+..+.+.......+.|+++.|.+-|+...+.
T Consensus 99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 2 1222222222221 1 122356666666666665432 23334444444455778888888888777665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccH
Q 005905 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV----FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGI 296 (670)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~ 296 (670)
+--.....||..+. +.+.|++..|++...+++++|++-... .-.-.+++-. .|+ -..++.. + -+
T Consensus 174 sGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgN---t~~lh~S----a---l~ 241 (459)
T KOG4340|consen 174 SGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGN---TLVLHQS----A---LV 241 (459)
T ss_pred cCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccc---hHHHHHH----H---HH
Confidence 43334466766554 345677788888888887777642111 0000111000 000 0000100 0 02
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 375 (670)
..+|.-...+.+.|+++.|.+-+-+|.-. ....|++|...+.-.= ..+++.+..+-+.-+.... +--..||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 23344444567889999999888888622 2244666665543222 2344555555555555442 2346789989999
Q ss_pred HHhcCCHHHHHHHHHH
Q 005905 376 CERKDDVEVGLMLLSQ 391 (670)
Q Consensus 376 ~~~~g~~~~a~~~~~~ 391 (670)
||+..-++.|-.++.+
T Consensus 320 yCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAE 335 (459)
T ss_pred HhhhHHHhHHHHHHhh
Confidence 9999999999888853
No 136
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.68 E-value=0.15 Score=56.46 Aligned_cols=218 Identities=11% Similarity=0.052 Sum_probs=146.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHH
Q 005905 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGA 111 (670)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A 111 (670)
.+..++...|++..+++.++. |.......+-.-...+.|..++|..+++... ..|..|...+-.+|...+..++|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 346788999999999998886 4443333322233466788889988877542 34788888888999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-------HhcCCCCHHHHHHHHHHHHhcCC----------HHHHH
Q 005905 112 FQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAM-------FENVKPDRVVFNALITACGQSGA----------VDRAF 174 (670)
Q Consensus 112 ~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~-------~~~~~~~~~~~~~li~~~~~~g~----------~~~A~ 174 (670)
..+|++.... -|+......+..+|.+.+.+.+. ....+.+...|=++++.+.+.-. ..-|.
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 9999998875 57788888888899998887652 22345556665566666655422 34466
Q ss_pred HHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 175 DVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVY-KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253 (670)
Q Consensus 175 ~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 253 (670)
+.++.+.+.+ |-.-+..-...-+..+...|.+++|.+++ ....+.-.+.+...-+--++.+...++|.+..++-.++.
T Consensus 175 ~m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 175 KMVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 6777777653 31122222223344455778888888888 344444334455555666777777788877777777777
Q ss_pred HCCC
Q 005905 254 KKGV 257 (670)
Q Consensus 254 ~~g~ 257 (670)
..|.
T Consensus 254 ~k~~ 257 (932)
T KOG2053|consen 254 EKGN 257 (932)
T ss_pred HhCC
Confidence 7654
No 137
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.094 Score=58.49 Aligned_cols=218 Identities=13% Similarity=0.160 Sum_probs=126.0
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 005905 65 ARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD 144 (670)
Q Consensus 65 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~ 144 (670)
..+.++-.+.+.+.+|++-|-+. .|+..|.-++..+.+.|.+++-...+....+..-+|.. =+.||-+|++.+++.
T Consensus 1108 sqlakAQL~~~~v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1108 SQLAKAQLQGGLVKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLT 1183 (1666)
T ss_pred HHHHHHHHhcCchHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHH
Confidence 34555555566677777666444 34456778888888888888877777655555444443 346777888888877
Q ss_pred HHHhc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 005905 145 AMFEN-VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK 223 (670)
Q Consensus 145 ~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 223 (670)
+..+- ..||......+.+-|...|.++.|.-+|... .-|..+...+...|++..|..--++.
T Consensus 1184 elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-----------SN~a~La~TLV~LgeyQ~AVD~aRKA------ 1246 (1666)
T KOG0985|consen 1184 ELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-----------SNFAKLASTLVYLGEYQGAVDAARKA------ 1246 (1666)
T ss_pred HHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHHhhhc------
Confidence 76653 4577777777777777777777777666543 23555666666667666665433222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHH
Q 005905 224 GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLM 303 (670)
Q Consensus 224 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li 303 (670)
.+..+|..+-.+|...+.+.-| +|.-.++.....-+..++..|...|-+++...+++...... ......|+-|.
T Consensus 1247 ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELa 1320 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELA 1320 (1666)
T ss_pred cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHH
Confidence 2345666666565554443322 23333333334445556666666666666655555432211 11233444444
Q ss_pred HHHHhc
Q 005905 304 GACSNA 309 (670)
Q Consensus 304 ~~~~~~ 309 (670)
-.|++-
T Consensus 1321 iLYsky 1326 (1666)
T KOG0985|consen 1321 ILYSKY 1326 (1666)
T ss_pred HHHHhc
Confidence 444443
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.65 E-value=0.0024 Score=65.99 Aligned_cols=123 Identities=13% Similarity=0.118 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 230 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
.+|+..+...++++.|..+|+++.+.. |+. ...++..+...++-.+|.+++.+..+.. +-+....+.-...|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555555566666666666666553 332 2334555555555555666655555432 33444444444555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 310 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
++++.|..+.+++.+.. +-+..+|..|..+|.+.|++++|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 55666666555555442 1133355555555555555555555555443
No 139
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.63 E-value=5.1e-05 Score=47.25 Aligned_cols=29 Identities=34% Similarity=0.671 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 005905 333 TMNALITALCDGDQLPKTMEVLSDMKSLG 361 (670)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 361 (670)
+||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 140
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.60 E-value=0.00083 Score=69.66 Aligned_cols=123 Identities=11% Similarity=0.149 Sum_probs=103.2
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHH
Q 005905 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTIT 368 (670)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 368 (670)
+.+.+......+++.+....+++.+..++.+.+... ...-..|..++|..|...|..++++++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 446667778888998888899999999999888642 222244567999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 369 YSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 369 ~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
|+.|++.+.+.|++..|.++...|...+...+..++.--+..|.+
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 999999999999999999999999887777777777666666544
No 141
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.60 E-value=0.12 Score=57.75 Aligned_cols=348 Identities=12% Similarity=0.039 Sum_probs=192.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 005905 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVL 115 (670)
Q Consensus 39 g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~ 115 (670)
.+...|+..|-+..+.+ +.-...+..+...++...+...|...|+... ..|..++......|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 44777788777777776 4445555567777777677788888887653 456778888889999999999998883
Q ss_pred HHHHHcCCCCC-HHHHH--HHHHHHHhcCCHHHHH-------hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 005905 116 RLVQEAGLKAD-CKLYT--TLITTCAKSGKVDAMF-------ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185 (670)
Q Consensus 116 ~~m~~~g~~pd-~~~~~--~li~~~~~~g~~~~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 185 (670)
-..-+. .|- .-.++ .+--.|.+.++...+. ..-+.|...|..+..+|..+|++..|+++|.+...
T Consensus 550 l~~~qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--- 624 (1238)
T KOG1127|consen 550 LRAAQK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--- 624 (1238)
T ss_pred HHHhhh--chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---
Confidence 222221 111 11111 1222334444443322 23356888999999999999999999999998865
Q ss_pred CCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Q 005905 186 PVDPDHITIGALM--KACANAGQVDRAREVYKMIHKYN------IKGTPEVYTIAINCCSQTGDWEFACSVYDDM----- 252 (670)
Q Consensus 186 ~~~pd~~t~~~li--~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----- 252 (670)
+.|+. +|...- ..-+..|.+.+|...+..+.... ...-..++-.+...+.-.|-..+|..+|++-
T Consensus 625 -LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~ 702 (1238)
T KOG1127|consen 625 -LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFI 702 (1238)
T ss_pred -cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 46653 333322 24567789999988887765421 1111223322222233333333333333322
Q ss_pred --HHCCCCCCHHHHHHHHHHH-----------------------HhcCCh---H---HHHHHHHHHHHCCCCccHHHHHH
Q 005905 253 --TKKGVIPDEVFLSALIDFA-----------------------GHAGKV---E---AAFEILQEAKNQGISVGIISYSS 301 (670)
Q Consensus 253 --~~~g~~p~~~t~~~li~~~-----------------------~~~g~~---~---~A~~i~~~m~~~~~~~~~~~~~~ 301 (670)
.......+...|-.+-++| -..+.. + -|.+.+-.-. .+..+..+|..
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~WyN 780 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWYN 780 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHHH
Confidence 2221111222222221111 111111 1 0111110000 01112233333
Q ss_pred HHHHHHh----cC----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 302 LMGACSN----AK----NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373 (670)
Q Consensus 302 li~~~~~----~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 373 (670)
|+.-|.+ +| +...|...+.+..+.. ..+..+||.|-.. ...|.+.-|.-.|-+-... .+-+..+|..+-
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~Nlg 857 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLG 857 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccc
Confidence 3333322 22 2345666676665543 3477788877655 5556777776666655443 345677888777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 374 VACERKDDVEVGLMLLSQAKEDGVIPNLV 402 (670)
Q Consensus 374 ~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 402 (670)
..|....+++.|...|.+... +.|+..
T Consensus 858 vL~l~n~d~E~A~~af~~~qS--LdP~nl 884 (1238)
T KOG1127|consen 858 VLVLENQDFEHAEPAFSSVQS--LDPLNL 884 (1238)
T ss_pred eeEEecccHHHhhHHHHhhhh--cCchhh
Confidence 778889999999999987765 335443
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.57 E-value=0.003 Score=65.29 Aligned_cols=126 Identities=17% Similarity=0.153 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
...+++..+...++++.|.++|+++.+.. | .+...++..+...++-.+|.+++++.++.... +...+..-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34456677777888999999999988765 3 34556788888888888999999888866433 6667777777888
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
+.++.+.|+.+.+++.+.. +.+..+|..|..+|.+.|+++.|...++.+.-
T Consensus 246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999998864 45566899999999999999999988887763
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.56 E-value=0.0067 Score=53.99 Aligned_cols=115 Identities=15% Similarity=0.183 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChH
Q 005905 204 AGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVE 278 (670)
Q Consensus 204 ~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~ 278 (670)
.++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+........|+. .....+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555554432 2221 12222334455555555555555555554422211 12223344455555555
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 279 ~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
+|+..++..... ......+....+.|.+.|++++|...|+.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555442221 12233444455555555555555555543
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.55 E-value=0.0041 Score=55.37 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIA 232 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l 232 (670)
..|..++..+ ..++...+...++.+.....+-.......-.+...+...|++++|...|+.+......++ ......+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 4566677776 488899999999999886211111123333455778899999999999999988663232 2345567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m 287 (670)
...+...|++++|+..++...... .....+....++|...|+.++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888999999999999997754333 34456677888999999999999998764
No 145
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.52 E-value=0.039 Score=61.42 Aligned_cols=180 Identities=13% Similarity=0.147 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 170 VDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
...|+..|-+..+. .|+ ...|..|...|+..-+...|.+.|+..-+.+ ..+...+....+.|+...+++.|..+
T Consensus 474 ~~~al~ali~alrl----d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 474 SALALHALIRALRL----DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHhc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 55666666555543 222 3466677777777667777777777776655 45566677777777777777777776
Q ss_pred HHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005905 249 YDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327 (670)
Q Consensus 249 ~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 327 (670)
.-..-+.... .-..-|...--.|...++..+|..-|+...+.. +-|...|..++.+|..+|.+..|.++|.+....
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 3222111100 000111122233555666667776666666654 456667777777777777777777777766543
Q ss_pred CCCHHHHHH--HHHHHHhCCChhHHHHHHHHHH
Q 005905 328 KPTVSTMNA--LITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 328 ~p~~~~~~~--li~~~~~~g~~~~A~~l~~~m~ 358 (670)
+|+. +|.. .....+..|.+.+|+..+....
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2322 1221 1223445667777776666554
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.52 E-value=0.098 Score=57.83 Aligned_cols=222 Identities=14% Similarity=0.088 Sum_probs=110.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 005905 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKAC--ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243 (670)
Q Consensus 166 ~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (670)
..+++..|+.....+.+. .|+. .|..++.++ .+.|+.++|..+++.....+. .|..+...+-.+|...++.+
T Consensus 21 d~~qfkkal~~~~kllkk----~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK----HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred hhHHHHHHHHHHHHHHHH----CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhh
Confidence 445666666666666654 3442 333444443 356677777766665554442 25566666667777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC----------CHH
Q 005905 244 FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK----------NWQ 313 (670)
Q Consensus 244 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g----------~~~ 313 (670)
+|..+|+..... .|+......+..+|.+.+.+.+-.++--++-+. .+-+...+=++++.+...- -..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 777777766554 345555566666666666654433332222221 1222232223333332221 123
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCChhHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 314 KALELYEHMKSIK-LKPTVSTMNALITALCDGDQLPKTMEVLS-DMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391 (670)
Q Consensus 314 ~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~-~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 391 (670)
-|.+.++.+.+.+ .--+..-.-.-...+-..|++++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555555555432 11111111112233345666777777663 233221222333333444555566666666666666
Q ss_pred HHHCC
Q 005905 392 AKEDG 396 (670)
Q Consensus 392 m~~~g 396 (670)
+...|
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 66554
No 147
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.51 E-value=0.0001 Score=45.85 Aligned_cols=29 Identities=31% Similarity=0.588 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 148
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.46 E-value=0.0017 Score=53.00 Aligned_cols=67 Identities=25% Similarity=0.426 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCC--------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005905 310 KNWQKALELYEHMKSIKL-KPTVSTMNALITALCDGD--------QLPKTMEVLSDMKSLGLCPNTITYSILLVAC 376 (670)
Q Consensus 310 g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 376 (670)
+++...-.+|+.++..|+ -|++.+|+.++.+.++.. +.-+.+.+++.|...+++|+..||+.++.++
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 444444444444444444 444444444444433321 1223344445555545555555555555443
No 149
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.41 E-value=0.0033 Score=51.31 Aligned_cols=81 Identities=14% Similarity=0.230 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHH
Q 005905 333 TMNALITALCDGDQLPKTMEVLSDMKSLGL-CPNTITYSILLVACERKD--------DVEVGLMLLSQAKEDGVIPNLVM 403 (670)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~ 403 (670)
|-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-+.+.+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334567777778999999999999999999 999999999999876543 24467889999999999999999
Q ss_pred HHHHHHHHHh
Q 005905 404 FKCIIGMCSR 413 (670)
Q Consensus 404 ~~~li~~~~r 413 (670)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.40 E-value=0.0033 Score=50.30 Aligned_cols=95 Identities=16% Similarity=0.101 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236 (670)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (670)
|..+...+...|++++|...|++..+.. +.+...+..+...+...+++++|.+.|+...+.. +.+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD---PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence 4455666677777777777777776531 2233555666666777777777777777766654 33445666667777
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 005905 237 SQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~ 255 (670)
...|+++.|...+....+.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 7777777777777666543
No 151
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.40 E-value=0.004 Score=57.41 Aligned_cols=89 Identities=19% Similarity=0.328 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------------CHHHHH
Q 005905 188 DPDHITIGALMKACAN-----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG----------------DWEFAC 246 (670)
Q Consensus 188 ~pd~~t~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~ 246 (670)
..|..+|..++..|.+ .|.++-....++.|.+.|+.-|..+|+.|++.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4567777777777764 4677777778888888888888888888888876521 234455
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005905 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276 (670)
Q Consensus 247 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 276 (670)
+++++|...|+.||..|+..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 555555555555555555555555544433
No 152
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.34 E-value=0.002 Score=59.29 Aligned_cols=100 Identities=13% Similarity=0.278 Sum_probs=48.8
Q ss_pred cHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 005905 295 GIISYSSLMGACSN-----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITY 369 (670)
Q Consensus 295 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 369 (670)
+-.+|..+++.|.+ .|.++=....+..|.+.|+..|..+|+.|+..+=+. .+ .|... |
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg-~f---------------vp~n~-f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG-KF---------------VPRNF-F 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC-Cc---------------ccccH-H
Confidence 34455555555543 245555555566666666666666666666654431 11 11111 0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 370 ~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
.++..-| -.+.+-|++++++|...|+-||.+++..+++.+|+
T Consensus 109 Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 109 QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 0111011 12233455666666666666666666666666655
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.32 E-value=0.0094 Score=50.66 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK--GTPEVYTIAI 233 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li 233 (670)
++..+...+.+.|++++|.+.|..+.....+-......+..+..++.+.|+++.|...|+.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34555666667777777777777776541110111234445666677777777777777766654211 1234566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCC
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
.++.+.|+.++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66677777777777777776654
No 154
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.30 E-value=0.21 Score=49.22 Aligned_cols=220 Identities=10% Similarity=0.095 Sum_probs=115.2
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005905 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241 (670)
Q Consensus 162 ~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 241 (670)
..+.+.|.+++|..-|+.+... .|+..+ ...++.+.--.++-. .....+..+...||
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~----~~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQH----EPSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGD 170 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhc----CCCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCc
Confidence 4567889999999999988875 343211 112222111111111 11122233344566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
...|+.....+++..+ .|...+..-..+|...|.+..|..=++...+.. .-+..+.--+-..+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6666666666655432 344555555556666666666655555544433 22233333444555556666666555555
Q ss_pred HHhCCCCCCHHH----HHHH---------HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHH
Q 005905 322 MKSIKLKPTVST----MNAL---------ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS---ILLVACERKDDVEVG 385 (670)
Q Consensus 322 m~~~~~~p~~~~----~~~l---------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---~ll~a~~~~g~~~~a 385 (670)
-.+. .||-.. |-.| +......+++.++++..+...+....-..++|+ .+-.++...|++.+|
T Consensus 249 CLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eA 326 (504)
T KOG0624|consen 249 CLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEA 326 (504)
T ss_pred HHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHH
Confidence 5443 233211 1110 122345677888888888877643221233333 344456678999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHH
Q 005905 386 LMLLSQAKEDGVIPN-LVMFKCIIGM 410 (670)
Q Consensus 386 ~~~~~~m~~~g~~p~-~~~~~~li~~ 410 (670)
++...+..+ +.|| ..++.--..+
T Consensus 327 iqqC~evL~--~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 327 IQQCKEVLD--IDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHh--cCchHHHHHHHHHHH
Confidence 999988876 4465 4444333333
No 155
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.20 E-value=0.29 Score=52.58 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHhcCCCCHHHHHHHHHHHHhcCCH
Q 005905 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFENVKPDRVVFNALITACGQSGAV 170 (670)
Q Consensus 94 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~---~~~~~~~~~~~~~~li~~~~~~g~~ 170 (670)
.|+.+...++....+++|.+.|..--. . ...+.++.+...+++ ....++-|....-.|..++...|.-
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC 868 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMC 868 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchH
Confidence 455555555555555555555543211 1 112333333333322 2234555666677778888888888
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005905 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKM 216 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~ 216 (670)
++|.+.|-+-. .|. ..+..|....++.+|.++-+.
T Consensus 869 ~qAV~a~Lr~s------~pk-----aAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 869 DQAVEAYLRRS------LPK-----AAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHhcc------CcH-----HHHHHHHHHHHHHHHHHHHHh
Confidence 88888775532 232 345677777778777776543
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.20 E-value=0.0073 Score=48.19 Aligned_cols=90 Identities=22% Similarity=0.158 Sum_probs=39.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~ 311 (670)
+...+...|++++|...+++..+.... +...+..+...+...+++++|.+.+....+.. +.+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 333444444444444444444433211 22333334444444444444444444444432 2222344444445555555
Q ss_pred HHHHHHHHHHHH
Q 005905 312 WQKALELYEHMK 323 (670)
Q Consensus 312 ~~~A~~~~~~m~ 323 (670)
++.|...+....
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 157
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.15 E-value=0.17 Score=47.86 Aligned_cols=161 Identities=16% Similarity=0.148 Sum_probs=112.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236 (670)
Q Consensus 158 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (670)
.-++-+....|+.+-|..+++++..+ + |...-...+ .--+-..|++++|.++|+.+.+.+ +.|..+|---+...
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~---f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDR---F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHh---C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 34445556677888888888888775 2 432222111 112445788999999999988876 66777777666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC---CHH
Q 005905 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQ 313 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~ 313 (670)
-..|+--+|++-+.+..+.= ..|...|.-+-..|...|++++|.-.++++.-.. +.+...+..+.+.+-..| +++
T Consensus 131 ka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHH
Confidence 67777778888887777653 4488899999999999999999999999888764 445555555555554443 466
Q ss_pred HHHHHHHHHHhC
Q 005905 314 KALELYEHMKSI 325 (670)
Q Consensus 314 ~A~~~~~~m~~~ 325 (670)
.|.+.|.+..+.
T Consensus 209 ~arkyy~~alkl 220 (289)
T KOG3060|consen 209 LARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHh
Confidence 777778777754
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.13 E-value=0.02 Score=48.58 Aligned_cols=97 Identities=18% Similarity=0.034 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIK--GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVFLSALID 269 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~li~ 269 (670)
+......+.+.|++++|.+.|..+.+.... .....+..+..++.+.|+++.|...|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444555555555555555555443210 11234444555555555555555555555443211 01233444444
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 005905 270 FAGHAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 270 ~~~~~g~~~~A~~i~~~m~~~ 290 (670)
++.+.|+.++|...+.++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 455555555555555555544
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.12 E-value=0.0097 Score=59.42 Aligned_cols=128 Identities=13% Similarity=0.041 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~ 306 (670)
+|..++...-+.+..+.|..+|.+..+.+. .+..+|...... |...++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455555555555556666666666553321 122223222222 22244455566666665554 344555566666666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 307 SNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.+.++.+.|+.+|++.... -+.. ..|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665543 2222 3666666666666666666666666665
No 160
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.10 E-value=0.011 Score=58.89 Aligned_cols=144 Identities=12% Similarity=0.083 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005905 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN-AKNWQKALELYEHMKSIKLKPTVSTMNALITA 340 (670)
Q Consensus 262 ~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 340 (670)
.+|..++..+-+.+..+.|..+|.+..+.+ ..+..+|.....+-.. .++.+.|.++|+...+. +..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888999999999988654 3333444444444233 46667799999987754 34577888888888
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 341 LCDGDQLPKTMEVLSDMKSLGLCPNT---ITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410 (670)
Q Consensus 341 ~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 410 (670)
+...++.+.|..+|++.... +.++. ..|...+.-=.+.|+++.+.++.+++.+. -|+......+++-
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 88999999999999988865 33332 47888888888889999999998888874 3444444445543
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.05 E-value=0.016 Score=60.15 Aligned_cols=85 Identities=11% Similarity=0.102 Sum_probs=35.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387 (670)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 387 (670)
..|++++|...|++..+... .+...|..+..+|...|++++|+..+++..... +.+...|..+..+|.+.|++++|..
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 34444444444444443321 133344444444444444444444444444321 1123334344444444444444444
Q ss_pred HHHHHHH
Q 005905 388 LLSQAKE 394 (670)
Q Consensus 388 ~~~~m~~ 394 (670)
.|++.++
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 4444443
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.006 Score=58.85 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=85.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCC---CCHHHHHHHHHHHHcCCCH
Q 005905 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPN---PTLSTFNMLMSVCASSKDS 108 (670)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~y~~li~~~~~~g~~ 108 (670)
-|.+++.+++++|++.|.+.++.. |.+.+++..-..++.+.|.++.|++-.+.... .-..+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 356668999999999999999987 89999999889999999999999988876543 3356899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005905 109 EGAFQVLRLVQEAGLKADCKLYTTLITT 136 (670)
Q Consensus 109 ~~A~~~~~~m~~~g~~pd~~~~~~li~~ 136 (670)
++|++.|.+.++ +.|+..+|-.=+..
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 999999999887 57887777654443
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.02 E-value=0.046 Score=48.21 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
+....-.+...+...|++++|..+|+-...- .|. ..-|-.|.-+|-..|++++|+..|......+ +.++..+-.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ 108 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHH
Confidence 3444555666677788888888888887763 444 3445566666777888888888888887776 566777777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
+-.++...|+.+.|.+-|+..+..
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788888888888888888776543
No 164
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.00 E-value=0.71 Score=49.79 Aligned_cols=307 Identities=11% Similarity=0.053 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhhCCC-CCH------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH
Q 005905 61 KVYHARFFNVCKSQKAIKEAFRFFKLVPN-PTL------------STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127 (670)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~------------~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 127 (670)
+.+-.++.......-.++.|...|-+... +.+ ..-.+=|.+| -|.+++|.++|-+|-++.+
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL---- 765 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL---- 765 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh----
Confidence 34445566666666677777777755421 111 1112223333 4899999999988877643
Q ss_pred HHHHHHHHHHHhcCCHHHHHhcC-----C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHH
Q 005905 128 KLYTTLITTCAKSGKVDAMFENV-----K----PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALM 198 (670)
Q Consensus 128 ~~~~~li~~~~~~g~~~~~~~~~-----~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li 198 (670)
.|..+.+.|++-.+.+-+ . --...|+.+...++....+++|.+.|..-... ...+
T Consensus 766 -----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----------e~~~ 829 (1189)
T KOG2041|consen 766 -----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----------ENQI 829 (1189)
T ss_pred -----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------HhHH
Confidence 355666667666555411 1 12456788888888888888888887764321 1245
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005905 199 KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278 (670)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 278 (670)
.++.+..++++-+.+-..+ +.+....-.+.+++...|.-++|.+.|-+- +. | ...+..|...+++.
T Consensus 830 ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHH
Confidence 5566666665554444333 333445556667777777777776655332 11 1 13345566666666
Q ss_pred HHHHHHHHHHHCCCCccHHH--------------HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC----HHHHHH
Q 005905 279 AAFEILQEAKNQGISVGIIS--------------YSSLMGACSNAKNWQKALELYEHMKSI----KLKPT----VSTMNA 336 (670)
Q Consensus 279 ~A~~i~~~m~~~~~~~~~~~--------------~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~----~~~~~~ 336 (670)
+|.++-+...- |.+.+ ..--|..+.+.|..-+|-+++.+|.+. +.++- .....+
T Consensus 896 ~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~A 971 (1189)
T KOG2041|consen 896 EAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGA 971 (1189)
T ss_pred HHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHH
Confidence 66555432210 11110 012345666777777777777776542 21111 111111
Q ss_pred H-HHHH----------HhCCChhHHHHHHHHHHhC---CC----CCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 005905 337 L-ITAL----------CDGDQLPKTMEVLSDMKSL---GL----CPNTITY--SILLVACERKDDVEVGLMLLSQAKED- 395 (670)
Q Consensus 337 l-i~~~----------~~~g~~~~A~~l~~~m~~~---g~----~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~- 395 (670)
+ +.-+ -.+|..++|..+++.-... .+ ---...| -.+.+--...|.++.|++.--.+.++
T Consensus 972 lLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYE 1051 (1189)
T KOG2041|consen 972 LLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYE 1051 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHh
Confidence 1 1111 1357777777766553321 01 1112233 34444456678888888876666554
Q ss_pred CCCCCHHHHHHH
Q 005905 396 GVIPNLVMFKCI 407 (670)
Q Consensus 396 g~~p~~~~~~~l 407 (670)
.+-|...+|+-+
T Consensus 1052 d~lpP~eiySll 1063 (1189)
T KOG2041|consen 1052 DFLPPAEIYSLL 1063 (1189)
T ss_pred hcCCHHHHHHHH
Confidence 566666777644
No 165
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.99 E-value=0.18 Score=49.04 Aligned_cols=177 Identities=10% Similarity=-0.010 Sum_probs=98.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVY---TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
....+...|++++|.+.|+.+...- +.+.... -.+..+|.+.+++++|...|++..+....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3344456677777777777776643 2222322 23456667777777777777777766443333344333333321
Q ss_pred c--C---------------C---hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005905 274 A--G---------------K---VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333 (670)
Q Consensus 274 ~--g---------------~---~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 333 (670)
. + + ...|+.. +..++.-|-...-..+|...+..++.. =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~---------------~~~li~~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRD---------------FSKLVRGYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHH---------------HHHHHHHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 0 0 1 1122233 334444444444455665555544421 0111
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 334 MNALITALCDGDQLPKTMEVLSDMKSL--GLCPNTITYSILLVACERKDDVEVGLMLLSQAK 393 (670)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 393 (670)
--.+..-|.+.|.+..|+.-|+.+.+. +.+........+..+|.+.|..++|..+...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 113455577888888888888888763 333445566677788888888888887766543
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.96 E-value=0.0014 Score=52.00 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=46.2
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 005905 309 AKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILLVACERKDDVEVGL 386 (670)
Q Consensus 309 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 386 (670)
.|+++.|..+|+++.+.... ++...+-.+..+|.+.|++++|+.++++ .+ ..|+. .....+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46677777777777655321 1344444567777777777777777766 22 12222 33334455667777777777
Q ss_pred HHHHH
Q 005905 387 MLLSQ 391 (670)
Q Consensus 387 ~~~~~ 391 (670)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.96 E-value=0.04 Score=50.60 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=25.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGT--PEVYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
+..+...+...|++++|...|++..+....+. ...+..+...|.+.|++++|...+.+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444444555555555544443221111 23344444444444444444444444443
No 168
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.93 E-value=0.26 Score=48.00 Aligned_cols=183 Identities=12% Similarity=-0.000 Sum_probs=114.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH-HHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITI---GALMKACANAGQVDRAREVYKMIHKYNIKGTPEV 228 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~-~t~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 228 (670)
+...+-.....+.+.|++++|.+.|+++... .|+. ... -.+..++.+.++++.|...|++..+........-
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~----yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR----YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence 3433444556667899999999999999875 3432 222 3456788999999999999999988643322233
Q ss_pred HHHHHHHHHh--cC---------------CH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005905 229 YTIAINCCSQ--TG---------------DW---EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288 (670)
Q Consensus 229 ~~~li~~~~~--~g---------------~~---~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~ 288 (670)
|...+.+.+. .+ |. .+|+..|++++ .-|=...-..+|...+..+.
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~ 171 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLK 171 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHH
Confidence 3333333321 11 11 23334444444 44444444555555544443
Q ss_pred HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 289 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
..= ..---.+..-|.+.|.+..|..-|+.+.+. +.+......-.|+.+|...|..++|......+.
T Consensus 172 ~~l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 172 DRL----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 321 111125667788999999999999988864 222344556678899999999999988776654
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.88 E-value=0.02 Score=59.32 Aligned_cols=90 Identities=9% Similarity=0.021 Sum_probs=52.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005905 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD 241 (670)
Q Consensus 162 ~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 241 (670)
..+...|++++|+++|++..+.. +-+...|..+..+|.+.|++++|+..++.+.+.. +.+...|..+..+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 33445566666666666666531 2234455555556666666666666666666554 3445556666666666666
Q ss_pred HHHHHHHHHHHHHC
Q 005905 242 WEFACSVYDDMTKK 255 (670)
Q Consensus 242 ~~~A~~l~~~m~~~ 255 (670)
+++|...|++.++.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666666554
No 170
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.86 E-value=0.17 Score=50.61 Aligned_cols=212 Identities=18% Similarity=0.212 Sum_probs=105.0
Q ss_pred hhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHhc
Q 005905 75 KAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKAD-----CKLYTTLITTCAKSGKVDAMFEN 149 (670)
Q Consensus 75 ~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-----~~~~~~li~~~~~~g~~~~~~~~ 149 (670)
.++++|..+ |+.....|...+++++|...|.+....-...+ ...|.....+|.+. +++++
T Consensus 29 ~~~e~Aa~~-----------y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~A--- 93 (282)
T PF14938_consen 29 PDYEEAADL-----------YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEA--- 93 (282)
T ss_dssp HHHHHHHHH-----------HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHH---
T ss_pred CCHHHHHHH-----------HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHH---
Confidence 466666665 45667777788888888888876543211111 11222222233222 33332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc----CCCC
Q 005905 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA-GQVDRAREVYKMIHKY----NIKG 224 (670)
Q Consensus 150 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~~ 224 (670)
+..|...+..|...|++..|-+++..+ ...|... |+++.|.+.|++..+. + .+
T Consensus 94 ----i~~~~~A~~~y~~~G~~~~aA~~~~~l-----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~ 151 (282)
T PF14938_consen 94 ----IECYEKAIEIYREAGRFSQAAKCLKEL-----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SP 151 (282)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHH-----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--H
T ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHHHHH-----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-Ch
Confidence 224445555555555555555444443 2334444 6677777777665432 2 11
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCC--CC-
Q 005905 225 --TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-----PDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQG--IS- 293 (670)
Q Consensus 225 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~li~~~~~~g~~~~A~~i~~~m~~~~--~~- 293 (670)
-..++..+...+.+.|++++|.++|++....-.. .+.. .|-..+-++...|++..|...++...... +.
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 0234555666777777777777777776553221 1111 22222334555667777777776665432 21
Q ss_pred -ccHHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 005905 294 -VGIISYSSLMGACSNA--KNWQKALELYEHMK 323 (670)
Q Consensus 294 -~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~ 323 (670)
....+...||.+|-.. ..++.|..-|+.+.
T Consensus 232 s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 232 SREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp SHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred cHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 1234455556665432 33556666565554
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.85 E-value=0.052 Score=54.36 Aligned_cols=147 Identities=17% Similarity=0.174 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCC-ccHHHHHHH
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-GKVEAAFEILQEAKNQ----GIS-VGIISYSSL 302 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~A~~i~~~m~~~----~~~-~~~~~~~~l 302 (670)
|...+..|...|++..|-.++.+ +...|... |++++|.+.|++..+. +.. .-..++..+
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 34444556666666665554444 33345555 6777777777766432 211 113455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHH-HHHHHHHHHHhCCChhHHHHHHHHHHhC--CCCCC--HHHHHHH
Q 005905 303 MGACSNAKNWQKALELYEHMKSIKLKP-----TVS-TMNALITALCDGDQLPKTMEVLSDMKSL--GLCPN--TITYSIL 372 (670)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~l 372 (670)
...+.+.|++++|.++|+++....... ++. .|-..+-++...|+...|.+.|++.... ++..+ ......|
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDL 241 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 777788888888888888776532211 121 1222333455567777777777776642 23222 2344455
Q ss_pred HHHHHh--cCCHHHHHHHHH
Q 005905 373 LVACER--KDDVEVGLMLLS 390 (670)
Q Consensus 373 l~a~~~--~g~~~~a~~~~~ 390 (670)
+.+|-. ...++.++.-|+
T Consensus 242 ~~A~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 242 LEAYEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHHHHTT-CCCHHHHCHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHc
Confidence 666532 233444444443
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.83 E-value=0.066 Score=58.12 Aligned_cols=63 Identities=14% Similarity=0.057 Sum_probs=39.0
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+...|.++...+...|++++|...|++.... .|+...|..+...|...|+.++|...+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555555566666666666666653 35666666666666666666666666666555
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.82 E-value=0.0029 Score=50.22 Aligned_cols=12 Identities=8% Similarity=0.254 Sum_probs=4.0
Q ss_pred HHhcCCHHHHHH
Q 005905 306 CSNAKNWQKALE 317 (670)
Q Consensus 306 ~~~~g~~~~A~~ 317 (670)
|.+.|++++|.+
T Consensus 68 ~~~l~~y~eAi~ 79 (84)
T PF12895_consen 68 LLKLGKYEEAIK 79 (84)
T ss_dssp HHHTT-HHHHHH
T ss_pred HHHhCCHHHHHH
Confidence 333333333333
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.81 E-value=0.037 Score=50.61 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP--DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~ 304 (670)
..|..+...+...|++++|+..|++.......+ ...++..+..++...|+.++|...++...+.. +.....++.+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 344555555555566666666666555442221 12345555555566666666666665555432 222333444444
Q ss_pred HHH
Q 005905 305 ACS 307 (670)
Q Consensus 305 ~~~ 307 (670)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 175
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.81 E-value=0.052 Score=49.81 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
....+..+...|...|++++|+..|++....... .++ ...+..+...+.+.|++++|...+.+..+.. +.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 3456777888899999999999999998764211 121 3577888889999999999999999988864 445677777
Q ss_pred HHHHHHhcCCHHHHHHHH
Q 005905 232 AINCCSQTGDWEFACSVY 249 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~ 249 (670)
+..+|...|+...+..-+
T Consensus 112 lg~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHHcCChHhHhhCH
Confidence 888888888765554433
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.75 E-value=0.035 Score=50.79 Aligned_cols=94 Identities=15% Similarity=0.081 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
...|..+...+...|++++|+..|++....... .+ ...++..+...+...|++++|...++...... +....+++.+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 345566666777778888888888777653100 11 12466667777777788888888777776653 3334555555
Q ss_pred HHHHH-------hcCCHHHHHHHH
Q 005905 233 INCCS-------QTGDWEFACSVY 249 (670)
Q Consensus 233 i~~~~-------~~g~~~~A~~l~ 249 (670)
...|. ..|+++.|+..+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHH
Confidence 55555 455555444333
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.68 E-value=0.0069 Score=45.70 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=46.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHHHHHH
Q 005905 35 LIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLM 99 (670)
Q Consensus 35 l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~li 99 (670)
+++.|++++|+++|+++.... |.+..+...+...+.+.|++++|.++++.+. .|+...|..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 457888999999999988877 7777766678888888888888888888774 45544444443
No 178
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.65 E-value=0.92 Score=45.96 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN 308 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~ 308 (670)
.+.-|.-+...|+...|.++-.+. . .||...|-..+.+++..+++++-.++-.. . -++.-|-.++.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHH
Confidence 344455666778877777776554 2 36888888888888888888877665432 1 124677788888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 309 AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 309 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
.|+..+|..+...+. +..-+..|.++|++.+|.+.--+..
T Consensus 250 ~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 888888887776622 2456677888888888877654443
No 179
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.60 E-value=0.065 Score=47.32 Aligned_cols=89 Identities=8% Similarity=-0.093 Sum_probs=44.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 312 (670)
..-+...|++++|..+|+-+...... +..-|-.|--+|-..|++++|...|....... +-|+..+-.+..++...|+.
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence 33344555555555555555544332 33444444445555555555555555555444 23444444455555555555
Q ss_pred HHHHHHHHHHH
Q 005905 313 QKALELYEHMK 323 (670)
Q Consensus 313 ~~A~~~~~~m~ 323 (670)
+.|++-|+...
T Consensus 120 ~~A~~aF~~Ai 130 (157)
T PRK15363 120 CYAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.59 E-value=0.11 Score=44.16 Aligned_cols=89 Identities=20% Similarity=0.100 Sum_probs=38.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--ccHHHHHHHHHHHHhc
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS--VGIISYSSLMGACSNA 309 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~--~~~~~~~~li~~~~~~ 309 (670)
.++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..+++........ .+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344445555555555555555544322 122333444445555555555555554443111 0111112222344455
Q ss_pred CCHHHHHHHHHHH
Q 005905 310 KNWQKALELYEHM 322 (670)
Q Consensus 310 g~~~~A~~~~~~m 322 (670)
|+.++|...+-..
T Consensus 89 gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 89 GRPKEALEWLLEA 101 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555554443
No 181
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.56 E-value=1.3 Score=46.60 Aligned_cols=377 Identities=14% Similarity=0.148 Sum_probs=203.5
Q ss_pred hhhHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHHHHHHH
Q 005905 26 SEQLHSYNRLI---RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMS 100 (670)
Q Consensus 26 ~~~~~~~~~l~---~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~li~ 100 (670)
+-++.+|..|+ +..-++++.+.++++...- |....+-...+..-...++++....+|.+.. .-++..|..-|.
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 44678899998 4568999999999997654 6555544445555566788999889987643 456777877776
Q ss_pred HHHc-CCCHHH----HHHHHHHHH-HcCCCCCH-HHHHHHHHHHH---hcCCHH------HHHh----c-CC--------
Q 005905 101 VCAS-SKDSEG----AFQVLRLVQ-EAGLKADC-KLYTTLITTCA---KSGKVD------AMFE----N-VK-------- 151 (670)
Q Consensus 101 ~~~~-~g~~~~----A~~~~~~m~-~~g~~pd~-~~~~~li~~~~---~~g~~~------~~~~----~-~~-------- 151 (670)
--.+ .++... ..+.|+-.+ +.|+.+-. ..|+.-+...- ..|.++ .+.+ . ..
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkL 174 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKL 174 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHH
Confidence 4433 333333 233444333 34443322 22444333221 223332 2221 0 11
Q ss_pred -CCHHHHHHHHHHHH-------hcCCHHHHHHHHHHHhhCCCCCCCCHHH---------------HHHHHHHHHHcCCHH
Q 005905 152 -PDRVVFNALITACG-------QSGAVDRAFDVLAEMNAEVHPVDPDHIT---------------IGALMKACANAGQVD 208 (670)
Q Consensus 152 -~~~~~~~~li~~~~-------~~g~~~~A~~l~~~m~~~~~~~~pd~~t---------------~~~li~~~~~~g~~~ 208 (670)
.|-..|..=|+... +...+-.|.+++++...--.|+..+..+ |..+|.- -+.+-+.
T Consensus 175 W~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-EksNpL~ 253 (656)
T KOG1914|consen 175 WKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-EKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-HhcCCcc
Confidence 12222222222111 1223455666665553321122221111 2222211 1111000
Q ss_pred ---------HHHHHHHHHH-HcCCCCCHHHHHH-------HHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHH
Q 005905 209 ---------RAREVYKMIH-KYNIKGTPEVYTI-------AINCCSQTGD-------WEFACSVYDDMTKKGVIPDEVFL 264 (670)
Q Consensus 209 ---------~A~~~~~~m~-~~~~~~~~~~~~~-------li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t~ 264 (670)
...-+|++.. -.+..| .+|.- .-+.+...|+ -+++..+++.....-...+..+|
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~p--eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHP--EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 112222 22211 1122333343 34455555554443222233344
Q ss_pred HHHHHHHHhc---CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 005905 265 SALIDFAGHA---GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITA 340 (670)
Q Consensus 265 ~~li~~~~~~---g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~ 340 (670)
..+.+.--.. ...+....++..+...-..--..+|..+|..-.+..-++.|+.+|.+.++.+..+ ++..+++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 4333221111 1255566666666554322234678888888889999999999999999887776 78888999987
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 005905 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITY-SILLVACERKDDVEVGLMLLSQAKEDGVIPN--LVMFKCIIGM 410 (670)
Q Consensus 341 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~ 410 (670)
|| .++..-|.++|+--.+. -+|.-.| ...++-+.+.++-..+..+|++....++.|| ..+|..+|+-
T Consensus 412 ~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 77 46788999999875542 3444333 4667778899999999999999998866655 4677777763
No 182
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.55 E-value=0.14 Score=55.74 Aligned_cols=145 Identities=10% Similarity=-0.074 Sum_probs=102.2
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHH
Q 005905 221 NIKGTPEVYTIAINCCSQTG-----DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--------KVEAAFEILQEA 287 (670)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g--------~~~~A~~i~~~m 287 (670)
..+.+...|...+.+..... +...|..+|++..+.... +...|..+..++.... ++..+.+.....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 44667888999888865432 367899999999887543 4455555544443321 123334444433
Q ss_pred HHC-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 288 KNQ-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 288 ~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
... ....+..+|.++.-.+...|++++|...|++..+.. |+...|..+...|...|+.++|.+.+++... +.|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC
Confidence 332 234456778878777777899999999999998874 6888999999999999999999999999876 46666
Q ss_pred HHHH
Q 005905 367 ITYS 370 (670)
Q Consensus 367 ~t~~ 370 (670)
.||.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 6654
No 183
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.63 Score=44.31 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHH----
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL---- 302 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~l---- 302 (670)
.+.+.++.++...|.+.-...++.+.++...+.+....+.|.+.--+.|+.+.|...|+...+..-..+..+.+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4556666666666777777777777777665666666677777777777777777777766544323333333322
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 005905 303 -MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370 (670)
Q Consensus 303 -i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 370 (670)
...|.-.+++-.|...|.++...+ ..|+..-|.-.-+..-.|+..+|++.++.|.+. .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 223444566666666666666554 224444444333444456666666666666653 34443333
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.42 E-value=0.015 Score=43.85 Aligned_cols=52 Identities=21% Similarity=0.377 Sum_probs=25.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
..|++++|.++|+.+.... +.+..++..+..+|.+.|++++|..+++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555554443 334445555555555555555555555555444
No 185
>smart00463 SMR Small MutS-related domain.
Probab=96.24 E-value=0.015 Score=45.62 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=56.6
Q ss_pred eeeccccCcchhhHHHHHHHHHHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhCCCCCC
Q 005905 534 VVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQG 613 (670)
Q Consensus 534 ~~~~~~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~p~~~ 613 (670)
+.+|+++++...|...+..+|...... +.-+.+ .|+||+|.|+..-...++.+|..+|...+.+|..
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~~----~~~~~~---------~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~ 68 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARLK----GLEQKL---------VIITGKGKHSLGGKSGVKPALKEHLRVESFRFAE 68 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHHc----CCCceE---------EEEEcccCCCccchhhHHHHHHhchhhcccccCC
Confidence 468999999999988877777766643 211222 6889999987633345999999999999999986
Q ss_pred CCccceEEec
Q 005905 614 NGSYGKIRIN 623 (670)
Q Consensus 614 ~~~~g~~~~~ 623 (670)
+...|.+.+.
T Consensus 69 ~~~~G~~~v~ 78 (80)
T smart00463 69 EGNSGVLVVK 78 (80)
T ss_pred CCCCeEEEEE
Confidence 5333888763
No 186
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.22 E-value=0.057 Score=52.29 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=55.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 005905 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (670)
+.+++++|...|.+.++.. +-|.+-|..=..+|++.|.++.|++--+.....+ +.-..+|..|-.+|...|++++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHHH
Confidence 4556666666666666553 4445555555666666666666666555555443 1134556666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHH
Q 005905 353 VLSDMKSLGLCPNTITYSILL 373 (670)
Q Consensus 353 l~~~m~~~g~~p~~~t~~~ll 373 (670)
.|++..+ +.|+-.+|-.=|
T Consensus 171 aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 171 AYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHhhhc--cCCCcHHHHHHH
Confidence 6666554 456655554433
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.15 E-value=1.8 Score=43.90 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 377 (670)
+.+..|.-+...|+...|.++-.+.+ -|+..-|...|.+|+..+++++-.++... +-.++-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 45555777788999999999988776 68999999999999999999987776432 223488999999999
Q ss_pred hcCCHHHHHHHHHH
Q 005905 378 RKDDVEVGLMLLSQ 391 (670)
Q Consensus 378 ~~g~~~~a~~~~~~ 391 (670)
+.|...+|..+..+
T Consensus 249 ~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 249 KYGNKKEASKYIPK 262 (319)
T ss_pred HCCCHHHHHHHHHh
Confidence 99999999999876
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.14 E-value=0.023 Score=42.38 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=28.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 304 GACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
..+.+.|++++|...|+.+.+.. +-+...|..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555555443 12445555555555555555555555555544
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.34 Score=46.04 Aligned_cols=142 Identities=13% Similarity=0.090 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI----- 268 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li----- 268 (670)
.+.++..+...|.+.-...++.++.+.+.+.++.....|.+.-.+.||.+.|...|+...+..-+.|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345666666778899999999999998877788889999999999999999999999887654444444444433
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338 (670)
Q Consensus 269 ~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 338 (670)
..|.-++++..|...+.+....+ +.|+...|.=.-+..-.|+..+|.+..+.|++. .|...+-++++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 34556677888888888887765 344444443333344468999999999999976 35554444443
No 190
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.08 E-value=0.68 Score=43.74 Aligned_cols=82 Identities=9% Similarity=0.039 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH----HHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT----ITYSILL 373 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll 373 (670)
.+..++.-|=......+|......+.+. =...--.+..-|.+.|.+..|..-++.+.+. -|+. .....++
T Consensus 112 ~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~ 185 (203)
T PF13525_consen 112 EFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLA 185 (203)
T ss_dssp HHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHH
T ss_pred HHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHH
Confidence 3444444555555555555555544421 0011112345566677777777777666653 2332 2345555
Q ss_pred HHHHhcCCHHHH
Q 005905 374 VACERKDDVEVG 385 (670)
Q Consensus 374 ~a~~~~g~~~~a 385 (670)
.++.+.|..+.+
T Consensus 186 ~~y~~l~~~~~a 197 (203)
T PF13525_consen 186 EAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHTT-HHHH
T ss_pred HHHHHhCChHHH
Confidence 666666665533
No 191
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.07 E-value=0.16 Score=45.03 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA 287 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m 287 (670)
+...++..+...|++++|..+...+....+- |...|..+|.+|...|+...|.++|+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444455555555666666655555554432 5555555566666666665555555554
No 192
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.04 E-value=0.034 Score=41.97 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDM 252 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m 252 (670)
+|..+...+...|++++|+..|++..+.+ +.+..+|..+..+|.+.| ++++|++.|++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33344444444444444444444444433 223334444444444444 344444444443
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.04 E-value=0.031 Score=41.61 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=23.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
.+...|++++|.+.|+.+.+.. +.+...+..+..++.+.|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444433 23344444444444444444444444444443
No 194
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.98 E-value=1.5 Score=41.44 Aligned_cols=183 Identities=12% Similarity=0.009 Sum_probs=101.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005905 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237 (670)
Q Consensus 158 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 237 (670)
-.....+.+.|++++|.+.|+.+.....+-+--....-.++.++.+.|+++.|...++...+.-......-+...+.+.+
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence 34455677889999999999999875211111123455677889999999999999998877532211122222222222
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH
Q 005905 238 QTGDWEFACSVYDDMTKKGVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314 (670)
Q Consensus 238 ~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (670)
......... ....+... -...+..++.-|=......+|...+..+...= ...--.+..-|.+.|.+..
T Consensus 89 ~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l----a~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 89 YYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL----AEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHCTT-HHH
T ss_pred HHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcccHHH
Confidence 111111110 00000000 01244555566666666677766666554321 1112246677999999999
Q ss_pred HHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChhHHH
Q 005905 315 ALELYEHMKSIKLKPTV----STMNALITALCDGDQLPKTM 351 (670)
Q Consensus 315 A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~ 351 (670)
|..-|+.+.+. -|+. ...-.|+.+|.+.|..+.|.
T Consensus 160 A~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 160 AIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999998865 3443 34566788888888877443
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.90 E-value=0.46 Score=40.32 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=44.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC---HHH-HHHHHHHH
Q 005905 303 MGACSNAKNWQKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN---TIT-YSILLVAC 376 (670)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t-~~~ll~a~ 376 (670)
..++-..|+.++|..+|++....|.... ...+-.+...|...|++++|+.+|++.... .|+ ... ...+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHH
Confidence 3445556666666666666665554332 223334455566666666666666665543 132 111 11122345
Q ss_pred HhcCCHHHHHHHHHH
Q 005905 377 ERKDDVEVGLMLLSQ 391 (670)
Q Consensus 377 ~~~g~~~~a~~~~~~ 391 (670)
...|+.++|+..+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 556666666666543
No 196
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=2.8 Score=42.78 Aligned_cols=270 Identities=12% Similarity=0.046 Sum_probs=135.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCCHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~y~~li~~~~~~g~~~ 109 (670)
|...+..++.+|+..+....... |.+..++..-+..+...+++++|.--.+.- .+.....+.-.-+++...++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHH
Confidence 34446667888888888877766 555555443334444455565554433221 1111222222333333344444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhc--CCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhhCCCC
Q 005905 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN--VKPDRVVFNALI-TACGQSGAVDRAFDVLAEMNAEVHP 186 (670)
Q Consensus 110 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~--~~~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~~~~ 186 (670)
+|.+.++ |...| ...++ ...++..... -+|...+|-.+- .++.-.|++++|.+.-....+.
T Consensus 135 ~A~~~~~---------~~~~~-~~ana---l~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--- 198 (486)
T KOG0550|consen 135 EAEEKLK---------SKQAY-KAANA---LPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--- 198 (486)
T ss_pred HHHHHhh---------hhhhh-HHhhh---hhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc---
Confidence 4444433 11111 00000 0001111111 113334444332 4455667777777766665543
Q ss_pred CCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHH-------------HHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 187 VDPDHITIGALMK--ACANAGQVDRAREVYKMIHKYNIKGTPE-------------VYTIAINCCSQTGDWEFACSVYDD 251 (670)
Q Consensus 187 ~~pd~~t~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------------~~~~li~~~~~~g~~~~A~~l~~~ 251 (670)
.++ ..+..+++ ++.-.++.+.|...|++.++.+ |+.. .+..=-+-..+.|.+..|.+.|.+
T Consensus 199 -d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 199 -DAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred -ccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence 121 12222333 2334566777777777766544 2211 111222334567888888888887
Q ss_pred HHHC---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005905 252 MTKK---GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325 (670)
Q Consensus 252 m~~~---g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (670)
.+.. ++.|+...|.....+..+.|++++|+.--.+..+.+ ..-...|..-..++.-.++|++|.+-|++..+.
T Consensus 275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7654 345556666666667777888888887777666543 111222323334455566777777777766543
No 197
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.66 E-value=0.21 Score=42.84 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAE 179 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~ 179 (670)
|..++.++|-++++.|+++....+.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~ 27 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKS 27 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 345566666677777776666665544
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.58 Score=45.75 Aligned_cols=100 Identities=17% Similarity=0.085 Sum_probs=53.5
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CChhHHHHHHHHHHhCCCCCCHHH-
Q 005905 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG---DQLPKTMEVLSDMKSLGLCPNTIT- 368 (670)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t- 368 (670)
+-|...|-.|...|...|+++.|..-|....+.. .+|...+..+..++... ..-.++..+|+++... .|+.++
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 4455666666666666666666666666655443 23444444444443322 2344566666666653 343333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 369 YSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 369 ~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
...|..++...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 333334456666666666666666654
No 199
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.57 E-value=1.1 Score=47.88 Aligned_cols=189 Identities=15% Similarity=0.166 Sum_probs=99.9
Q ss_pred HHHHHHHHHcCCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 005905 95 FNMLMSVCASSKDSE--GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDR 172 (670)
Q Consensus 95 y~~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 172 (670)
++..-.+|.+-++.. +-+.-+++|+++|-.|+..... ..|+-.|++.++ ...+-++|.-.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA---~~~Ay~gKF~EA--------------AklFk~~G~enR 663 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLA---DVFAYQGKFHEA--------------AKLFKRSGHENR 663 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHH---HHHHhhhhHHHH--------------HHHHHHcCchhh
Confidence 455555666555433 3444567888888778876543 344455555544 344566777777
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHK--YNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250 (670)
Q Consensus 173 A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 250 (670)
|+++|.+|+-- -...-+...|..++-..+.++-.+ ++++... +....+...|+.++|..+.-
T Consensus 664 AlEmyTDlRMF------------D~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk----aAAEmLiSaGe~~KAi~i~~ 727 (1081)
T KOG1538|consen 664 ALEMYTDLRMF------------DYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK----AAAEMLISAGEHVKAIEICG 727 (1081)
T ss_pred HHHHHHHHHHH------------HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH----HHHHHhhcccchhhhhhhhh
Confidence 77777766421 122334445554443333322111 1111111 12233334455555554431
Q ss_pred ------HHHHCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 251 ------DMTKKGV---IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 251 ------~m~~~g~---~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
-+.+.+- ..+..++..+...+.+...+..|-++|..|-.. .+++++....++|.+|..+-+.
T Consensus 728 d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 728 DHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred cccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhh
Confidence 1111111 113345555555555666777788888776443 2677788888888888888777
Q ss_pred HHhC
Q 005905 322 MKSI 325 (670)
Q Consensus 322 m~~~ 325 (670)
..+.
T Consensus 799 hPe~ 802 (1081)
T KOG1538|consen 799 HPEF 802 (1081)
T ss_pred Cccc
Confidence 6543
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.56 E-value=0.25 Score=48.60 Aligned_cols=99 Identities=20% Similarity=0.128 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKYN--IKGTPE 227 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~ 227 (670)
...|+..+..+.+.|++++|+..|+.+... .|+. ..+..+..+|...|++++|...|+.+.+.- -+....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~----yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d 218 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK----YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD 218 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence 345666666666778899999999988875 3442 355667788888899999999988887642 112244
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
.+-.+...|...|+.++|..+|+++.+..
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 55556667778888888888888887764
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.45 E-value=0.079 Score=47.07 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-----CCCCCCHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-----LGLCPNTIT 368 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 368 (670)
+...++..+...|++++|..+...+.... +-|...|..+|.+|...|+..+|++.|+++.. .|+.|+..|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 33445555555666666666666555543 23555566666666666666666666655432 355555444
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.45 E-value=0.072 Score=40.12 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-ChhHHHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGD-QLPKTMEVLSD 356 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~ 356 (670)
+|..+...+...|++++|...|.+..+.. +.+...|..+..+|...| ++++|++.|++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 33344444444444444444444443332 113333444444444444 34444444443
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.87 Score=44.54 Aligned_cols=101 Identities=15% Similarity=0.087 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCccHHHH
Q 005905 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA---GKVEAAFEILQEAKNQGISVGIISY 299 (670)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~A~~i~~~m~~~~~~~~~~~~ 299 (670)
+.|...|-.|-..|...|+++.|..-|.+..+...+ +...+..+..++..+ ..-.++..+++++.+.. +.|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 455566666666666666666666666665544221 333333333333222 12345555555555544 3344444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005905 300 SSLMGACSNAKNWQKALELYEHMKSI 325 (670)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (670)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44555555555555555555555544
No 204
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.37 E-value=2 Score=38.81 Aligned_cols=127 Identities=13% Similarity=0.011 Sum_probs=83.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 005905 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG---VIPDEVFL 264 (670)
Q Consensus 188 ~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~ 264 (670)
.|+...-..+..+....|+..+|...|.+...--+..|....-.+.++....+++..|...++.+.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 566666666777777888888888888777764455666777777777777788888888877776643 2333 33
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 265 SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318 (670)
Q Consensus 265 ~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 318 (670)
-.+...+...|+..+|..-|+..... -|+...-.....++++.|+.++|..-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 44566677777777777777777664 34443333344556677766555443
No 205
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.31 E-value=0.13 Score=49.17 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 188 DPDHITIGALMKACAN-----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262 (670)
Q Consensus 188 ~pd~~t~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 262 (670)
+.|..+|.+.+..+.. .+.++-....++.|.+.|+..|..+|+.||+.+-+-.- .|..+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH
Confidence 4566666666666543 35566666677888888888888888888887654321 11111
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 005905 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 263 t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~ 311 (670)
.-..++ -|- .+-+-+.+++++|...|+.||..+-..|+.++.+.+.
T Consensus 128 fQ~~F~-HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFL-HYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHh-hCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111111 111 1112345556666666666666666666666655554
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.30 E-value=3.9 Score=42.02 Aligned_cols=76 Identities=13% Similarity=0.088 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 196 ALMKACANAGQVDRAREVYKMIHKYN---IKGTPEVYTIAINCCSQ---TGDWEFACSVYDDMTKKGVIPDEVFLSALID 269 (670)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 269 (670)
.++-+|....+++...++++.+...- +.....+-....-++.+ .|+.++|++++..+......++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44456777777887777777776541 12222333334445555 6788888888877665555667777776665
Q ss_pred HH
Q 005905 270 FA 271 (670)
Q Consensus 270 ~~ 271 (670)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 207
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.30 E-value=0.27 Score=42.14 Aligned_cols=97 Identities=8% Similarity=-0.002 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005905 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374 (670)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 374 (670)
|..++.++|.++++.|+++....+.+..=.. ..+.. ...+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 3456677777777777777777666554321 11100 00000 1112456789999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 005905 375 ACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMC 411 (670)
Q Consensus 375 a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~ 411 (670)
+|+..|++..|+++.+...+ .+++.+..++..|+.-+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999987765 68888888888887643
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.22 E-value=0.38 Score=47.29 Aligned_cols=98 Identities=9% Similarity=0.033 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC----HHHH
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN----TITY 369 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~ 369 (670)
...|...+..+.+.|++++|...|+.+.+.-+... ...+-.+...|...|++++|...|+.+... .|+ ...+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH
Confidence 34455555555566777777777777765422111 235556677777777777777777777653 222 3333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 370 SILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 370 ~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
..+...+...|+.++|..+|+.+++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445566777888888877777664
No 209
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.20 E-value=2.2 Score=45.44 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcC--CCCHHHHHHHHHHHHhcCC
Q 005905 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV--KPDRVVFNALITACGQSGA 169 (670)
Q Consensus 92 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~~li~~~~~~g~ 169 (670)
..-.+.+++-+-+.|.++.|+++-.+-. .-.....++|+++.|++.. ..+...|..|.....+.|+
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTB
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCC
Confidence 3446777888888888888887653322 2245667888888888743 4578899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVY 249 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 249 (670)
++-|.+.|.+.. -|..++-.|.-.|+.+.-.++-+.....| -+|....++...|+.++..+++
T Consensus 363 ~~lAe~c~~k~~-----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 363 IELAEECYQKAK-----------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHHCT------------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHhhc-----------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHH
Confidence 999999998864 25567777888899988888888877776 2666667777788888888777
Q ss_pred HH
Q 005905 250 DD 251 (670)
Q Consensus 250 ~~ 251 (670)
.+
T Consensus 426 ~~ 427 (443)
T PF04053_consen 426 IE 427 (443)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 210
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=4.5 Score=41.34 Aligned_cols=177 Identities=15% Similarity=0.101 Sum_probs=104.3
Q ss_pred CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005905 189 PDHITIGALM-KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN--CCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265 (670)
Q Consensus 189 pd~~t~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 265 (670)
|...++..+- .++.-.|++++|..+--.+.+.+ .. ..+...++ ++.-.++.+.|...|.+-+..+ |+...-
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~--n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~s- 239 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-AT--NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKS- 239 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cc--hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhH-
Confidence 4344444332 24556778888877776666654 21 23333333 2334567777777777766553 332221
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH
Q 005905 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTMNALITALC 342 (670)
Q Consensus 266 ~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~ 342 (670)
+..-...+.+..+...| ....+.|++..|.+.|.+..... ..|+...|........
T Consensus 240 ---------k~~~~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~ 298 (486)
T KOG0550|consen 240 ---------KSASMMPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI 298 (486)
T ss_pred ---------HhHhhhHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc
Confidence 11112223333444444 23458899999999998877543 3456666777777788
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSIL---LVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 343 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
+.|+..+|+.--++... .|..-.-.+ ..++.-.+++++|++-|+...+..
T Consensus 299 rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 299 RLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred ccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999887776654 333222222 234556688888988888777643
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.88 E-value=0.16 Score=38.76 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=26.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.|.+.+++++|.++++.+...++ .+...|......|.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555555555555544432 2444444444555555555555555555444
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.69 E-value=0.23 Score=37.79 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=21.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 202 ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 202 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
.+.++++.|.++++.+...+ +.++..|.....+|.+.|++++|...|+...+
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444444332 22333333344444444444444444444433
No 213
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.63 E-value=0.23 Score=47.59 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005905 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381 (670)
Q Consensus 349 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 381 (670)
=++.++++|...|+.||..+-..|++++++.+-
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 356677777777777777777777777766654
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.63 E-value=1.3 Score=47.51 Aligned_cols=90 Identities=8% Similarity=0.066 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH--------
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-------- 367 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------- 367 (670)
..+.-.+...+.+...+..|-++|.+|-. ..++++.+...+++++|..+-+...+ +.||..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhh
Confidence 44555555556677778889999988763 23577888899999999999887665 344432
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 368 ---TYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 368 ---t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
-|.-.-.||.++|+-.+|.++++++....
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 24445578889999999999998876543
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.60 E-value=0.87 Score=46.11 Aligned_cols=130 Identities=19% Similarity=0.043 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HCC-CCccHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMT----KKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK----NQG-ISVGII 297 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~-p~~~t~~~li~~~~~~g~~~~A~~i~~~m~----~~~-~~~~~~ 297 (670)
.|..|-+.|.-.|+++.|+...+.-+ +-|-+ .....++.+-.++.-.|.++.|.+.|+... +.| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444455555566666665443322 11111 112345555555566666666666555432 122 112233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSI-----KLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
..-+|...|.-..++++|+..+.+-... +..-...++-+|..+|...|..++|+.+.+.-
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4445555555555666666555432210 00113344555556666666666665555443
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.53 E-value=1.2 Score=45.26 Aligned_cols=281 Identities=16% Similarity=0.072 Sum_probs=162.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhhhhhHHHHHHHhhh-------CCC--CCHHHHHHHHHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKL-------VPN--PTLSTFNMLMSV 101 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~-------~~~--~~~~~y~~li~~ 101 (670)
..|++.|+.+.-+.+|+...+.|.... -..++..+..++.-.+++++|+++... +-. -...+...|.+.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 567899999999999999999985321 233455566777778899999987532 110 112233344445
Q ss_pred HHcCCCHHHHHHHHHHHH----HcCC-CCCHHHHHHHHHHHHhcCCHHH---HHh-cCCCCHHHHHHHHHHHHhcCCHHH
Q 005905 102 CASSKDSEGAFQVLRLVQ----EAGL-KADCKLYTTLITTCAKSGKVDA---MFE-NVKPDRVVFNALITACGQSGAVDR 172 (670)
Q Consensus 102 ~~~~g~~~~A~~~~~~m~----~~g~-~pd~~~~~~li~~~~~~g~~~~---~~~-~~~~~~~~~~~li~~~~~~g~~~~ 172 (670)
+--.|.+++|+-...+-+ +.|- ......+-.|-+.|...|+--. ..+ +-.++.++ . .++.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~-~----------al~~ 173 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVT-S----------ALEN 173 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHH-H----------HHHH
Confidence 555666777654432211 1120 1122334445555655443211 111 11111111 1 1334
Q ss_pred HHHHHHHHhhCC--CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCC-CCHHHHHHHHHHHHhcCCHHH
Q 005905 173 AFDVLAEMNAEV--HP-VDPDHITIGALMKACANAGQVDRAREVYKMIHK----YNIK-GTPEVYTIAINCCSQTGDWEF 244 (670)
Q Consensus 173 A~~l~~~m~~~~--~~-~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-~~~~~~~~li~~~~~~g~~~~ 244 (670)
|.++|.+=.+.. .| --.....|..+.+.|.-.|+++.|+..++.-.. .|-. .....+..+.+++.-.|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 444443321110 00 011223566677777778999999988764332 2211 123467778889999999999
Q ss_pred HHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCccHHHHHHHHHHHHhcCCHHH
Q 005905 245 ACSVYDDMTK----KGV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-----GISVGIISYSSLMGACSNAKNWQK 314 (670)
Q Consensus 245 A~~l~~~m~~----~g~-~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~ 314 (670)
|.+.|+.-.. .|- ........+|-..|.-...+++|+.+|..-... ...-....|-+|..+|...|..++
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 9999876542 221 123345566777888888889998887653321 112235667789999999999999
Q ss_pred HHHHHHHHHh
Q 005905 315 ALELYEHMKS 324 (670)
Q Consensus 315 A~~~~~~m~~ 324 (670)
|..+.+.-.+
T Consensus 334 Al~fae~hl~ 343 (639)
T KOG1130|consen 334 ALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHH
Confidence 9987776543
No 217
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.16 E-value=4.5 Score=40.52 Aligned_cols=130 Identities=18% Similarity=0.293 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHCCC---CccHHHHHHHHHHHHhcCC-
Q 005905 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGH--AG----KVEAAFEILQEAKNQGI---SVGIISYSSLMGACSNAKN- 311 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~--~g----~~~~A~~i~~~m~~~~~---~~~~~~~~~li~~~~~~g~- 311 (670)
+++.+.+++.|.+.|..-+..+|-+....... .. ....|..+|+.|++... .++-..+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566777888888888777666553333322 22 24567888888887642 3344555555544 3333
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCC-C--hhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 312 ---WQKALELYEHMKSIKLKPTVS-TMNALITALCDGD-Q--LPKTMEVLSDMKSLGLCPNTITYSILL 373 (670)
Q Consensus 312 ---~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g-~--~~~A~~l~~~m~~~g~~p~~~t~~~ll 373 (670)
.+.++.+|+.+.+.|+.++-. -+.+-|-++.... . ..++.++++.+.+.|+++....|..+-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 456677777777766654432 2222233333221 1 446778888888888887777766443
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.13 E-value=0.14 Score=39.70 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPV---DPD-HITIGALMKACANAGQVDRAREVYKMI 217 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~---~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m 217 (670)
+|+.+...|...|++++|+..|++........ .|+ ..++..+...|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45556666666666666666666554320001 111 234444555555555555555555544
No 219
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.06 E-value=2.5 Score=37.06 Aligned_cols=84 Identities=12% Similarity=0.098 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005905 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275 (670)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 275 (670)
.++..+...+.......+++.+...+ ..+...+|.++..|++.. ..+.++.+.. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 45555555566666666666665554 345556666666666543 2333333331 012223334555555555
Q ss_pred ChHHHHHHHHHH
Q 005905 276 KVEAAFEILQEA 287 (670)
Q Consensus 276 ~~~~A~~i~~~m 287 (670)
.++++..++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555443
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.01 E-value=0.76 Score=47.83 Aligned_cols=65 Identities=11% Similarity=-0.028 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKY 220 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 220 (670)
.+...|+.+..+|.+.|++++|+..|++..+. .|+. .+|..+..+|...|++++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46778888999999999999999999988764 5664 35888888888999999999988888775
No 221
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.00 E-value=3.3 Score=36.24 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 230 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
..++..+.+.+.+.....+++.+...+. .+...++.++..|++... ....+.+.. . ++..-...++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 3455566666666777777776666653 455666667766665432 223333331 1 1122223455556666
Q ss_pred CCHHHHHHHHHHH
Q 005905 310 KNWQKALELYEHM 322 (670)
Q Consensus 310 g~~~~A~~~~~~m 322 (670)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6666666666554
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.96 E-value=0.18 Score=39.04 Aligned_cols=61 Identities=20% Similarity=0.289 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CC-HHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKSI----KLK-PT-VSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~-~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
.+|+.+...|...|++++|...|++..+. |.. |+ ..+++.+...|...|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555555555555554321 100 11 334444444555555555555555443
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.91 E-value=1.2 Score=46.39 Aligned_cols=63 Identities=11% Similarity=0.023 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+...++.+..+|.+.|++++|...|++..+.. |+. .+|..+..+|...|+.++|++.|++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666666666666666655543 332 3466666666666666666666666665
No 224
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.88 E-value=7.8 Score=38.83 Aligned_cols=136 Identities=16% Similarity=0.267 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 005905 108 SEGAFQVLRLVQEAGLKADCKLYTTLITTCAK--SGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185 (670)
Q Consensus 108 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~--~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 185 (670)
+++.+.+++.|.+.|+.-+.++|-+..-.... ..+.+. ...+|..+|+.|++..+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~-----------------------~~~ra~~iy~~mKk~H~ 134 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDE-----------------------IIQRAKEIYKEMKKKHP 134 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHH-----------------------HHHHHHHHHHHHHHhCc
Confidence 34556788999999998888777653333222 112221 26789999999998732
Q ss_pred CC-CCCHHHHHHHHHHHHHcCC----HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHCC
Q 005905 186 PV-DPDHITIGALMKACANAGQ----VDRAREVYKMIHKYNIKGTP--EVYTIAINCCSQTGD--WEFACSVYDDMTKKG 256 (670)
Q Consensus 186 ~~-~pd~~t~~~li~~~~~~g~----~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g 256 (670)
.+ .++...+..++.. ...+ .+.++.+|+.+.+.|+..+- .....++........ ...+.++++.+.+.|
T Consensus 135 fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~ 212 (297)
T PF13170_consen 135 FLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNG 212 (297)
T ss_pred cccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcC
Confidence 22 3455666666544 2333 46678888888887766432 233333333322222 347888889999999
Q ss_pred CCCCHHHHHHHH
Q 005905 257 VIPDEVFLSALI 268 (670)
Q Consensus 257 ~~p~~~t~~~li 268 (670)
+++....|..+.
T Consensus 213 ~kik~~~yp~lG 224 (297)
T PF13170_consen 213 VKIKYMHYPTLG 224 (297)
T ss_pred CccccccccHHH
Confidence 888777776554
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.47 E-value=5.4 Score=43.08 Aligned_cols=16 Identities=25% Similarity=0.327 Sum_probs=12.6
Q ss_pred HhcCCHHHHHHHHHHH
Q 005905 36 IRQGRISECIDLLEDM 51 (670)
Q Consensus 36 ~~~g~~~~A~~l~~~m 51 (670)
.=++++++|.++|+.-
T Consensus 7 flnn~~~eAe~~l~~~ 22 (468)
T PF10300_consen 7 FLNNRFKEAEELLSPR 22 (468)
T ss_pred HHCCCHHHHHHHHHhc
Confidence 3478999999999854
No 226
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.33 E-value=5.3 Score=39.67 Aligned_cols=151 Identities=11% Similarity=0.009 Sum_probs=99.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHH----HHHHHHHhcCCHH
Q 005905 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS----SLMGACSNAKNWQ 313 (670)
Q Consensus 238 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~----~li~~~~~~g~~~ 313 (670)
..|...+|-..++++++.-+ -|...+...-++|.-.|+.+.-...++.+... ..+|...|. .+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~P-tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYP-TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCc-hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 46777777778888877643 37777777777888888888888777777654 233433333 3333445788899
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL---GLCPNTITYSILLVACERKDDVEVGLMLLS 390 (670)
Q Consensus 314 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 390 (670)
+|++.-++..+.+ +.|..+-.+....+-..|+.+++.++..+-... +-..-...|....-.+...+.++.|+.+|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9988888877665 447777777888888888898888877654321 101111223333334556688899999985
Q ss_pred H
Q 005905 391 Q 391 (670)
Q Consensus 391 ~ 391 (670)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
No 227
>PRK15331 chaperone protein SicA; Provisional
Probab=93.21 E-value=0.79 Score=40.81 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=8.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 005905 230 TIAINCCSQTGDWEFACSVYD 250 (670)
Q Consensus 230 ~~li~~~~~~g~~~~A~~l~~ 250 (670)
..|..+|-..+++++|...|.
T Consensus 75 ~GLaa~~Q~~k~y~~Ai~~Y~ 95 (165)
T PRK15331 75 MGLAAVCQLKKQFQKACDLYA 95 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444433
No 228
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=2.5 Score=43.10 Aligned_cols=139 Identities=12% Similarity=-0.008 Sum_probs=89.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 99 MSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLA 178 (670)
Q Consensus 99 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 178 (670)
.+.+.+.|++..|...|++.+.. +. |.+.-+.++.-.....-..+++.+..+|.+.+++..|++.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~ 281 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCN 281 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHH
Confidence 34677888888888888876642 10 000000111111112234566777888888888889988888
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 005905 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF-ACSVYDDMTK 254 (670)
Q Consensus 179 ~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~ 254 (670)
..+..+ ++|.-..---..+|...|+++.|+..|+.+.+.. +.|..+-+.++.+-.+.....+ ..++|..|..
T Consensus 282 kvLe~~---~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 282 KVLELD---PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHhcC---CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 887652 4555666666778888889999999998888865 5555666666666555554443 3677777764
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.04 E-value=7.7 Score=36.22 Aligned_cols=221 Identities=17% Similarity=0.088 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHH
Q 005905 168 GAVDRAFDVLAEMNAEVHPVDP---DHITIGALMKACANAGQVDRAREVYKMIHKY-NIKGTPEVYTIAINCCSQTGDWE 243 (670)
Q Consensus 168 g~~~~A~~l~~~m~~~~~~~~p---d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~ 243 (670)
+....+...+...... .+ ....+......+...+.+..+...+...... ........+......+...+++.
T Consensus 37 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (291)
T COG0457 37 GELAEALELLEEALEL----LPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYE 112 (291)
T ss_pred hhHHHHHHHHHHHHhc----CccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHH
Confidence 3445555555555442 22 2355556666666777777777766665542 22334455666666666667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHCCC--CccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 244 FACSVYDDMTKKGVIPDEVFLSALID-FAGHAGKVEAAFEILQEAKNQGI--SVGIISYSSLMGACSNAKNWQKALELYE 320 (670)
Q Consensus 244 ~A~~l~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~~i~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (670)
.+...+.........+. ........ .+...|+++.|...+........ ......+......+...++.+.|...+.
T Consensus 113 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 113 EALELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 77777777665443331 11222222 56677777777777777754221 1233444444445667778888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 321 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
.............+..+-..+...++.+.|...+...... .|+ ...+..+...+...+..+++...+....+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7765431113566777777777777888888888877763 343 334444444444666777787777766654
No 230
>PRK15331 chaperone protein SicA; Provisional
Probab=92.91 E-value=5.5 Score=35.59 Aligned_cols=93 Identities=13% Similarity=0.044 Sum_probs=70.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005905 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 238 (670)
.....+-+.|++++|..+|.-+..-+ .. |..-|..|..+|-..+++++|...|......+ ..|+..+-....+|..
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHH
Confidence 34445668999999999999887642 11 23344556666677899999999998776655 3455556667889999
Q ss_pred cCCHHHHHHHHHHHHHC
Q 005905 239 TGDWEFACSVYDDMTKK 255 (670)
Q Consensus 239 ~g~~~~A~~l~~~m~~~ 255 (670)
.|+.+.|...|....+.
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 99999999999988873
No 231
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=92.67 E-value=7.7 Score=35.25 Aligned_cols=99 Identities=13% Similarity=0.058 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHH
Q 005905 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKPTVSTMN 335 (670)
Q Consensus 259 p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~ 335 (670)
|+...-..|..+....|+..+|...|.+...--+.-|....-.+.++....++...|...++++-+.. -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44444444555555556666666655555544444455555555555555556666655555554432 1122 223
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHh
Q 005905 336 ALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 336 ~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.+...|...|++.+|..-|+....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 344555555666556665555554
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.51 E-value=14 Score=37.74 Aligned_cols=144 Identities=17% Similarity=0.127 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 170 VDRAFDVLAEMNAEVHPVDPDHITI-GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd~~t~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
...|...-.+..+ +.||.+-- ..-..++.+.|++.++-.+++.+-+....| ..+. +..+.+.|+- ++.-
T Consensus 245 p~~Ar~~A~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~--lY~~ar~gdt--a~dR 314 (531)
T COG3898 245 PASARDDALEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIAL--LYVRARSGDT--ALDR 314 (531)
T ss_pred hHHHHHHHHHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHH--HHHHhcCCCc--HHHH
Confidence 4445554444443 35553322 223457788888888888888887764333 3332 2334455653 2222
Q ss_pred HHHHHH-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC
Q 005905 249 YDDMTK-KGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQKALELYEHMKSI 325 (670)
Q Consensus 249 ~~~m~~-~g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~ 325 (670)
++...+ ...+| +....-.+..+....|++..|..--+...+ ..|....|-.|.+.-. ..|+-.++...+.+..+.
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 222211 01122 445666677777888888887766665554 3566777777766554 448999999888887764
No 233
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.20 E-value=6 Score=40.90 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 005905 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304 (670)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~ 304 (670)
..+|...|+...+..-++.|..+|-+..+.+ +.++...++++|..++ .|+...|..+|+.-...- +-+..--+-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 4789999999999999999999999999998 6788889999998665 678889999998755542 222333346677
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005905 305 ACSNAKNWQKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381 (670)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 381 (670)
-+...++-+.|..+|+...+. +..+ ...|..||.--..-|+...+..+=++|.+ +.|-.-+.....+-|.-..+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhcc
Confidence 788999999999999954421 1122 56899999999999999999999999987 46776666666666654433
No 234
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.02 E-value=7.1 Score=33.33 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=56.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387 (670)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 387 (670)
.||++......+-.+- .+....+.-+..+...|+-+.-.+++.++.+. -.|+......+..||.+.|+..++-+
T Consensus 68 ~C~NlKrVi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~e 141 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANE 141 (161)
T ss_dssp G-S-THHHHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred hhcchHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHH
Confidence 4555555555554332 35556677788888999999999999988763 37888888899999999999999999
Q ss_pred HHHHHHHCCC
Q 005905 388 LLSQAKEDGV 397 (670)
Q Consensus 388 ~~~~m~~~g~ 397 (670)
++.++-+.|+
T Consensus 142 ll~~ACekG~ 151 (161)
T PF09205_consen 142 LLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-
T ss_pred HHHHHHHhch
Confidence 9999988885
No 235
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.94 E-value=18 Score=37.76 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=48.4
Q ss_pred HHhhhhhHHHHHHHhhhC----C---C-----------CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC----CCH
Q 005905 70 VCKSQKAIKEAFRFFKLV----P---N-----------PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK----ADC 127 (670)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~----~---~-----------~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~----pd~ 127 (670)
.+.+.+.++.|++.+..- . . +|-..=+..+..+...|++.++..++++|...=++ -|.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~ 167 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNS 167 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccH
Confidence 345677788887775421 1 1 12222355667888899999999999888875443 688
Q ss_pred HHHHHHHHHHHhc
Q 005905 128 KLYTTLITTCAKS 140 (670)
Q Consensus 128 ~~~~~li~~~~~~ 140 (670)
.+|+.++-+++++
T Consensus 168 d~yd~~vlmlsrS 180 (549)
T PF07079_consen 168 DMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHHHHHhHH
Confidence 8998877776654
No 236
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.85 E-value=7.6 Score=39.05 Aligned_cols=167 Identities=12% Similarity=0.042 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CCHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANAGQVDRAREVYKMIHKYNIK-----GTPE 227 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~ 227 (670)
.|-.+-+++-+.-++.+++.+-..-... .|..|. .....++..++...+.++++++.|+...+.... ....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGL-PGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 3445555555555666666655444332 222331 123345667888888899999998876553211 1235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHH----CCCCc
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPDEVFLS-----ALIDFAGHAGKVEAAFEILQEAKN----QGISV 294 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~~-----~li~~~~~~g~~~~A~~i~~~m~~----~~~~~ 294 (670)
+|..|-+.|.+..|+++|.-+..+..+ .++.--..-|. .|.-++...|.+..|.+.-++..+ .|-.+
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 788899999999999988776655432 23331122232 233456677888777777776543 34222
Q ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 295 -GIISYSSLMGACSNAKNWQKALELYEHMK 323 (670)
Q Consensus 295 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (670)
.......+.+.|...|+.+.|+.-|++..
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 22344566778888899888888777643
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.67 E-value=18 Score=37.31 Aligned_cols=164 Identities=15% Similarity=0.069 Sum_probs=102.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKG---VIPDEVFLSALIDFAGH---AGKVEAAFEILQEAKNQGISVGIISYSSLMG 304 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~li~~~~~---~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~ 304 (670)
.++-+|....+++...++.+.|...- +.-....--...-++.+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44446999999999999999997652 11111111223334556 7999999999999766666788888888887
Q ss_pred HHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-hh---HHHHHH---HH-HHhCC---CCC
Q 005905 305 ACSN---------AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQ-LP---KTMEVL---SD-MKSLG---LCP 364 (670)
Q Consensus 305 ~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~---~A~~l~---~~-m~~~g---~~p 364 (670)
.|-. ....++|...|.+-=+. .||..+=-.+...+...|. .+ +..++- .. ..+.| -..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 7632 22367788777765443 3443322122222223332 22 222222 11 12233 234
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 365 NTITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 365 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
|-.-+.+++.++.-.|+.+.|.+..+.|.+..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 55667788889999999999999999998763
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.59 E-value=4.3 Score=43.25 Aligned_cols=156 Identities=19% Similarity=0.126 Sum_probs=89.4
Q ss_pred HHHHcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005905 200 ACANAGQVDRAREVYKMI-HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE 278 (670)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 278 (670)
...-.++++.+.++...- .-..+ +..-.+.++..+-+.|.++.|+.+-.+-. .-.+...+.|+++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 344567777765555311 11112 14457777888888888888887654321 1223455678888
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 279 ~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
.|.++.++ ..+...|..|.+...++|+++-|++.|.+.. -|..|.-.|...|+.+.-.++.+...
T Consensus 336 ~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHH
Confidence 87766543 2356688888888888888888888887654 25566666777777776666666655
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLS 390 (670)
Q Consensus 359 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 390 (670)
..|- ++....++.-.|++++..+++.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 5541 4444455556677777776664
No 239
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.47 E-value=3.6 Score=42.01 Aligned_cols=90 Identities=11% Similarity=0.055 Sum_probs=39.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 199 KACANAGQVDRAREVYKMIHKY-----NIKG---------TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFL 264 (670)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~-----~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 264 (670)
+.|.+.|++..|..-|+..... +.++ -..+++-+.-+|.+.+++..|+....+.+..+.. |...+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHH
Confidence 3455666676666666654431 0000 0122333444444444444444444444443322 33333
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 005905 265 SALIDFAGHAGKVEAAFEILQEAKN 289 (670)
Q Consensus 265 ~~li~~~~~~g~~~~A~~i~~~m~~ 289 (670)
-.--.+|...|+++.|+..|+.+.+
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3333444444444444444444444
No 240
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.32 E-value=12 Score=34.76 Aligned_cols=203 Identities=17% Similarity=0.133 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...+......+...+.+..+...+...... .........+......+...+++..+.+.+.........+ ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 136 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLA 136 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHH
Confidence 344455555666666666666666665431 0113334455556666666777777777777766644322 12222222
Q ss_pred H-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 005905 234 N-CCSQTGDWEFACSVYDDMTKKGV--IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310 (670)
Q Consensus 234 ~-~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g 310 (670)
. .+...|+++.|...|.+...... ......+......+...++.+.+...+....+.........+..+...+...+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 2 67777888888888887755221 12333444444446667788888888888776642214667777888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005905 311 NWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSL 360 (670)
Q Consensus 311 ~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 360 (670)
+++.|...+....... |+ ...+..+...+...+..+++...+.+....
T Consensus 217 ~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888877653 33 344444555555677788888888887764
No 241
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.06 E-value=7.6 Score=33.03 Aligned_cols=89 Identities=12% Similarity=-0.007 Sum_probs=37.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHH---HHHHHHHHHHhcCCHH
Q 005905 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII---SYSSLMGACSNAKNWQ 313 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~ 313 (670)
+..|+++.|++.|.+.+..-.+ ....||.-.+++.-+|+.++|++=+.+..+..-.-+.. .|..-...|...|+-+
T Consensus 54 aE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 54 AEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 3344444444444444333211 33344444444444444444444444443321111111 1222223345556666
Q ss_pred HHHHHHHHHHhCC
Q 005905 314 KALELYEHMKSIK 326 (670)
Q Consensus 314 ~A~~~~~~m~~~~ 326 (670)
.|..-|+...+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 6666665555444
No 242
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.82 E-value=4.6 Score=34.43 Aligned_cols=139 Identities=16% Similarity=0.134 Sum_probs=63.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005905 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEF 244 (670)
Q Consensus 165 ~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 244 (670)
.-.|.+++..++..+.... .+..-+|-+|--....-+-+-..++++.+-+ -.|. ..+|++..
T Consensus 13 ildG~V~qGveii~k~v~S-----sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKr 74 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS-----SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKR 74 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH-----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THH
T ss_pred HHhchHHHHHHHHHHHcCc-----CCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHH
Confidence 3467778888888877653 2333444444333333333333334333322 1111 12222222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 245 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
....+-.+- -+...+...++.....|+-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+
T Consensus 75 Vi~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 75 VIECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 222222111 022334445556666666666666766666533 55566666667777777777777777766665
Q ss_pred CCC
Q 005905 325 IKL 327 (670)
Q Consensus 325 ~~~ 327 (670)
.|+
T Consensus 149 kG~ 151 (161)
T PF09205_consen 149 KGL 151 (161)
T ss_dssp TT-
T ss_pred hch
Confidence 553
No 243
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.72 E-value=2.8 Score=41.18 Aligned_cols=75 Identities=15% Similarity=0.171 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-----CCCCCCHHHHH
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-----LGLCPNTITYS 370 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~ 370 (670)
..++..++..+..+|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4556677777788888888888888777665 34777788888888888888888888777764 34444444443
Q ss_pred H
Q 005905 371 I 371 (670)
Q Consensus 371 ~ 371 (670)
.
T Consensus 232 ~ 232 (280)
T COG3629 232 L 232 (280)
T ss_pred H
Confidence 3
No 244
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=16 Score=34.92 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=34.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHhhhhhHHHHHHHhhhCCCCC--HHHHHHHHHHHHcCCCHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVPNPT--LSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~y~~li~~~~~~g~~~ 109 (670)
+++-...+++.|...+.+..+.. ..+ ...|+ .+.++.|.-+.+.+..-+ +..|+-....|..+|.++
T Consensus 39 vafRnAk~feKakdcLlkA~~~y--EnnrslfhA--------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGY--ENNRSLFHA--------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHH--HhcccHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcc
Confidence 34445666666666665554221 111 11221 123444444444443221 223555566666666666
Q ss_pred HHHHHHHH
Q 005905 110 GAFQVLRL 117 (670)
Q Consensus 110 ~A~~~~~~ 117 (670)
-|-..+++
T Consensus 109 tAAmaleK 116 (308)
T KOG1585|consen 109 TAAMALEK 116 (308)
T ss_pred hHHHHHHH
Confidence 65555543
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.50 E-value=29 Score=37.54 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=83.5
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcC--C-CCCHH
Q 005905 156 VFNALITACGQ----SGAVDRAFDVLAEMNAEVHPVDPDHITIGAL-MKACANAGQVDRAREVYKMIHKYN--I-KGTPE 227 (670)
Q Consensus 156 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~l-i~~~~~~g~~~~A~~~~~~m~~~~--~-~~~~~ 227 (670)
.|..++..++. ....+.|.++++.+.+. -|+...|... .+.+...|++++|.+.|+...... . +....
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~----yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l 306 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR----YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL 306 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH
Confidence 45555544443 45688999999999875 5776666443 356778899999999998765321 1 11223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCh-------HHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA-GHAGKV-------EAAFEILQEAK 288 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~-~~~g~~-------~~A~~i~~~m~ 288 (670)
.+--+.-.+.-..+|++|.+.|..+.+..- .+..+|.-+..+| ...++. ++|.+++.++.
T Consensus 307 ~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 307 CYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 444566677888999999999999987532 2344454444333 345666 77777777653
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.38 E-value=8.5 Score=32.74 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=60.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCC--HHHHHHHHHHHHhcCC
Q 005905 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPN--TITYSILLVACERKDD 381 (670)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~--~~t~~~ll~a~~~~g~ 381 (670)
+.+..|+.+.|.+.|.+....- +.+...||.-..++.-.|+.++|++=+++..+ .|-+-. ...|..--..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567788888888888776543 33667788888888888888888887777766 332211 1223322334667788
Q ss_pred HHHHHHHHHHHHHCC
Q 005905 382 VEVGLMLLSQAKEDG 396 (670)
Q Consensus 382 ~~~a~~~~~~m~~~g 396 (670)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888887776665
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.31 E-value=4.4 Score=39.28 Aligned_cols=98 Identities=15% Similarity=0.178 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHP--VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTI 231 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~ 231 (670)
.|+.-+..| +.|++..|...|...++...+ ..|| .+--|..++...|++++|..+|..+.+.-. +--+..+--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 577666654 677799999999988876221 2333 344488888899999999999988876421 122466777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
|..+..+.|+.++|..+|+++.+.=
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 7778888889999999998888763
No 248
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=14 Score=36.92 Aligned_cols=103 Identities=9% Similarity=-0.025 Sum_probs=61.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHc
Q 005905 145 AMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA----LMKACANAGQVDRAREVYKMIHKY 220 (670)
Q Consensus 145 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~----li~~~~~~g~~~~A~~~~~~m~~~ 220 (670)
+.++..+.|..+++-.=++|..+|+.+.-...++++... ..||...|+- ..-++..+|-+++|++.-++..+.
T Consensus 128 klL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi 204 (491)
T KOG2610|consen 128 KLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI 204 (491)
T ss_pred HHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC
Confidence 344455666666666667777777777767777766543 2344322222 222334567777777776666665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 221 NIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251 (670)
Q Consensus 221 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 251 (670)
+ +.|.-.-.++...+-..|+..++.++..+
T Consensus 205 N-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 205 N-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred C-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 5 44555555666666666777777665544
No 249
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.87 E-value=15 Score=33.21 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=49.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHC
Q 005905 213 VYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG--KVEAAFEILQEAKNQ 290 (670)
Q Consensus 213 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~A~~i~~~m~~~ 290 (670)
..+.+.+.+++++...|..+|+.+.+.|++.. +.++...++-+|.......+-.+.... -..-|.+++.++.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~-- 89 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG-- 89 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh--
Confidence 33444555666666677777777777666433 444555566666665555443332211 1222233333222
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 291 GISVGIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
..+..+++.+...|++-+|.++.+..
T Consensus 90 ------~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 ------TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ------hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 12334455555666666666555543
No 250
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.62 E-value=4 Score=40.13 Aligned_cols=70 Identities=17% Similarity=0.206 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005905 195 GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLS 265 (670)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~ 265 (670)
..++..+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 334444555555555555555555544 44455555555555555555555555555433 34444444443
No 251
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.59 E-value=38 Score=37.65 Aligned_cols=89 Identities=17% Similarity=0.139 Sum_probs=72.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 294 VGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILL 373 (670)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 373 (670)
..-.+.+--+.-+...|+..+|.++-.+.+ -||-..|-.=+.+++..+++++-+++-+.++. ++-|.-..
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFV 751 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFV 751 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHH
Confidence 334455566667778899999999988887 78999999999999999999987777665542 46677788
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 005905 374 VACERKDDVEVGLMLLSQA 392 (670)
Q Consensus 374 ~a~~~~g~~~~a~~~~~~m 392 (670)
.+|.+.|+.++|.+++.+.
T Consensus 752 e~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 752 EACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHHhcccHHHHhhhhhcc
Confidence 9999999999999999754
No 252
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.59 E-value=41 Score=37.96 Aligned_cols=173 Identities=12% Similarity=0.093 Sum_probs=105.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHhhhhhHHHHHHHhhh-CCCCCHHHHHHHHHHHHcC
Q 005905 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLD-MDKVYHARFFNVCKSQKAIKEAFRFFKL-VPNPTLSTFNMLMSVCASS 105 (670)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~y~~li~~~~~~ 105 (670)
...-.+.|++..-+..|+.+-+.- +..+ ....++......+.+.|++++|...+-+ +..-++ ..+|.-|...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCH
Confidence 333455556666777777665443 2212 2355677777888889999999988754 322221 2456666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh---cCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE---NVKPDRV--VFNALITACGQSGAVDRAFDVLAEM 180 (670)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~---~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m 180 (670)
.....-..+++.+.+.|+. +...-+.|+++|.+.++.+...+ ....... -....+..+-+.+-.++|.-+-...
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 6777777788889999874 66667889999999999887654 2221111 1234555566666666665554433
Q ss_pred hhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005905 181 NAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMI 217 (670)
Q Consensus 181 ~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m 217 (670)
.. .......+ +-..+++++|.+.+..+
T Consensus 490 ~~-------he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-------HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred cc-------CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 21 11222222 34567788888877655
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=23 Score=34.90 Aligned_cols=143 Identities=13% Similarity=0.060 Sum_probs=75.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005905 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279 (670)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 279 (670)
.....|++.+|...|+...... +.+...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4456677777777777776654 333455666777777777777777777776543222222222223333434433333
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCC
Q 005905 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI--KLKPTVSTMNALITALCDGDQ 346 (670)
Q Consensus 280 A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~ 346 (670)
...+....-.. +-|...-..+...|...|+.+.|.+.+-.+.+. +.. |...-..|+..+.--|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 33333333221 225555556666677777777776655554432 221 33334444444444443
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=89.37 E-value=25 Score=37.11 Aligned_cols=162 Identities=8% Similarity=0.063 Sum_probs=78.4
Q ss_pred HHH--HHHHHHHHhcC-----CHHHHHHHHHHHhhCCCCCCCCHH-HHHHHHHHHHH---------cCCHHHHHHHHHHH
Q 005905 155 VVF--NALITACGQSG-----AVDRAFDVLAEMNAEVHPVDPDHI-TIGALMKACAN---------AGQVDRAREVYKMI 217 (670)
Q Consensus 155 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~~~~~~~pd~~-t~~~li~~~~~---------~g~~~~A~~~~~~m 217 (670)
..| ...+.+..... ..+.|+.+|.+.... ..+.|+-. .|..+..++.. .....+|.+.-+..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~-~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rA 330 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNK-SDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYV 330 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc-ccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 455 55555544422 256777788887732 13455532 22222222111 12344455555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCccH
Q 005905 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGI 296 (670)
Q Consensus 218 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~-~~~~~ 296 (670)
.+.+ +.|+.+...+..+....++++.|..+|++....+.. ...+|...--.+...|+.++|.+.+++..+.. ...-.
T Consensus 331 veld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 331 SDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 5555 455666666655556666666666666666555322 22333333333444566666666666644432 11112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 297 ISYSSLMGACSNAKNWQKALELYE 320 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~ 320 (670)
.+....+++|+..+ .+.|.++|-
T Consensus 409 ~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCc-hhhhHHHHh
Confidence 22333334554433 455555544
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.05 E-value=16 Score=34.77 Aligned_cols=55 Identities=15% Similarity=0.002 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 264 LSALIDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELY 319 (670)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~i~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (670)
|...|-.+....++..|...++.--+.+ -+-+..+...|+.+| ..|+.+++.++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 3334444445555555555555532221 122344455555555 345555554443
No 256
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.04 E-value=32 Score=35.91 Aligned_cols=146 Identities=10% Similarity=0.120 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 005905 261 EVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM-NALI 338 (670)
Q Consensus 261 ~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li 338 (670)
...|++.+.+..+..-++.|..+|-+..+.+ +.+++.+++++|..++ .|+...|.++|+.=... -||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4678889999999999999999999999998 7788999999998776 57888999999853332 3555544 4566
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 339 TALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (670)
.-+...++-+.|..+|+.-... +.-+ ...|..+|.-=+.-|++..+..+=+.|... -|-..+...+...|+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 6777889999999999965542 2233 467889999889999999998888888773 355444444444443
No 257
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.82 E-value=1.7 Score=29.13 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=8.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 005905 199 KACANAGQVDRAREVYKMIHK 219 (670)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~ 219 (670)
.+|...|++++|+++|+.+.+
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 333333333333333333333
No 258
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.75 E-value=4.5 Score=39.75 Aligned_cols=101 Identities=15% Similarity=0.219 Sum_probs=60.4
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 005905 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---LKP--TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN 365 (670)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 365 (670)
|.+....+...++..-....+++.+...+-+++... ..| +..+|-.++ -.-+.++++.++..=...|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 334444455555555555666777776666665321 011 122222222 22356677777777777778888
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 366 TITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 366 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
.+|++.+++.+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888877777777665543
No 259
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.71 E-value=57 Score=38.44 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCChHHH
Q 005905 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI----DFAGHAGKVEAA 280 (670)
Q Consensus 205 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li----~~~~~~g~~~~A 280 (670)
++++.|+.-+.++. ...|.-.++.--+.|.+.+|+.++. |+...+..+. +-+.....+++|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHH
Confidence 45556655544442 2345555666667777777777663 4555444444 444455667777
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST--MNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 281 ~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
--.|+..-+. --.+.+|..+|+|.+|..+-.++.. ..|... -..|+.-+...++.-+|-+++.+..
T Consensus 959 al~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 6666543221 2456778888888888888887753 223222 2568888888999999998888766
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 359 SLGLCPNTITYSILLVACERKDDVEVGLMLLSQ 391 (670)
Q Consensus 359 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 391 (670)
.. |. -.+.-++++..+++|.++-..
T Consensus 1027 sd---~~-----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1027 SD---PE-----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred cC---HH-----HHHHHHhhHhHHHHHHHHHHh
Confidence 42 22 223345566677777776643
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=88.60 E-value=36 Score=35.97 Aligned_cols=78 Identities=10% Similarity=-0.003 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 279 ~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
+|.+.-+...+.+ +.|......+..+..-.++++.|...|++....++. ...+|......+.-.|+.++|.+.+++..
T Consensus 322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3444444444443 344444444444444445555555555555444211 22233333333344555555555555533
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.48 E-value=15 Score=41.17 Aligned_cols=151 Identities=17% Similarity=0.221 Sum_probs=71.1
Q ss_pred CCHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 005905 152 PDRVVFNALITACG----QSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227 (670)
Q Consensus 152 ~~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 227 (670)
.|......+...|+ +.|++++|...|-+-... ++|. .+|.-|..+.++.+-...++.+.+.|+ .+..
T Consensus 362 ~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~d 432 (933)
T KOG2114|consen 362 LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF---LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSD 432 (933)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---CChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccch
Confidence 34444444444443 346666666655554431 3332 244444455555555555555555553 2334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~ 307 (670)
.-+.|+.+|.+.++.++-.++.+.-. .|.- ..-+...+..|.+.+-+++|..+-..... .......+ +-
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le 501 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LE 501 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HH
Confidence 45556666666666665555444332 2211 11133444555555555555544333221 12222222 33
Q ss_pred hcCCHHHHHHHHHHH
Q 005905 308 NAKNWQKALELYEHM 322 (670)
Q Consensus 308 ~~g~~~~A~~~~~~m 322 (670)
..+++++|.+.+..+
T Consensus 502 ~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 502 DLHNYEEALRYISSL 516 (933)
T ss_pred HhcCHHHHHHHHhcC
Confidence 456666666666655
No 262
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.05 E-value=40 Score=37.32 Aligned_cols=183 Identities=15% Similarity=0.066 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH--HH-HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-
Q 005905 207 VDRAREVYKMIHKYNIKGTPEVYTIAI--NC-CSQTGDWEFACSVYDDMTK-------KGVIPDEVFLSALIDFAGHAG- 275 (670)
Q Consensus 207 ~~~A~~~~~~m~~~~~~~~~~~~~~li--~~-~~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~li~~~~~~g- 275 (670)
...|.++++...+.|. ......-..+ .+ +....|.+.|+.+|+.+.+ .|. .....-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCC
Confidence 5678888888877763 1112222222 22 4466789999999988876 442 224445555565532
Q ss_pred ----ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hCCChh
Q 005905 276 ----KVEAAFEILQEAKNQGISVGIISYSSLMGACSN-AKNWQKALELYEHMKSIKLKPTVSTMNALITALC--DGDQLP 348 (670)
Q Consensus 276 ----~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~ 348 (670)
+.+.|+.++....+.| .|+....-..+..... -.+...|.++|...-..|.. ...-+-+++.... ...+..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 5677888888888887 4544444333333333 24678899999888877632 3322222222111 234567
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 005905 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGV 397 (670)
Q Consensus 349 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~ 397 (670)
.|..++.+..+.| .|-..--...+..+.. +..+.+.-.+..+...|.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 7778887777776 3332222333444444 666666666666666553
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=88.00 E-value=2 Score=28.87 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005905 299 YSSLMGACSNAKNWQKALELYEHMKSI 325 (670)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (670)
+..+...|...|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555555555544
No 264
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.99 E-value=34 Score=35.03 Aligned_cols=287 Identities=15% Similarity=0.057 Sum_probs=166.3
Q ss_pred hhhhHHHHHHHhhhC---CCCCHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 73 SQKAIKEAFRFFKLV---PNPTLSTFNMLMSV--CASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMF 147 (670)
Q Consensus 73 ~~~~~~~A~~~~~~~---~~~~~~~y~~li~~--~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~ 147 (670)
..|+-..|.++-.+. ...|....-.|+.+ -.-.|+++.|.+-|+-|... ..|--.=+.+
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRg----------- 159 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRG----------- 159 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHH-----------
Confidence 346677777765543 23444444445533 34479999999999999863 2222111111
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC
Q 005905 148 ENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYN-IKGT 225 (670)
Q Consensus 148 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~ 225 (670)
|.-.--+.|+.+.|..+-++.-.. .|. ...+...+...|..|+++.|+++.+.-.... +.++
T Consensus 160 ------------LyleAqr~GareaAr~yAe~Aa~~----Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 160 ------------LYLEAQRLGAREAARHYAERAAEK----APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKD 223 (531)
T ss_pred ------------HHHHHHhcccHHHHHHHHHHHHhh----ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchh
Confidence 111123455666666666555433 232 3456677777777777777777776554432 2222
Q ss_pred HH--HHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHH
Q 005905 226 PE--VYTIAINCCSQ---TGDWEFACSVYDDMTKKGVIPDEVFL-SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299 (670)
Q Consensus 226 ~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~ 299 (670)
.. .-..|+.+-.. ..+...|...-.+..+. .||.+-- ..-..++.+.|++.++-.+++.+-+....|+..
T Consensus 224 ~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia-- 299 (531)
T COG3898 224 VAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA-- 299 (531)
T ss_pred hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH--
Confidence 21 12223322211 23556666655555443 4443322 223456788899999999999998876555432
Q ss_pred HHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-H
Q 005905 300 SSLMGACSNAKNWQKAL-ELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC-E 377 (670)
Q Consensus 300 ~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~ 377 (670)
.+..+.+.|+.-... +-.+.+.+.. +.+..+--.+..+-...|++..|..--+.... ..|....|..+.+.- .
T Consensus 300 --~lY~~ar~gdta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeA 374 (531)
T COG3898 300 --LLYVRARSGDTALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEA 374 (531)
T ss_pred --HHHHHhcCCCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhh
Confidence 333455666632221 1111122221 33566677777888888998888776666555 478888888777764 4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC
Q 005905 378 RKDDVEVGLMLLSQAKEDGVIPN 400 (670)
Q Consensus 378 ~~g~~~~a~~~~~~m~~~g~~p~ 400 (670)
..|+-.++.+.+.+..+..-.|+
T Consensus 375 etGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 375 ETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred ccCchHHHHHHHHHHhcCCCCCc
Confidence 55999999999988887655554
No 265
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=87.97 E-value=2.4 Score=33.24 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=37.6
Q ss_pred eccccCcchhhHHHHHHHHHHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhCCCCCC
Q 005905 536 VDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQG 613 (670)
Q Consensus 536 ~~~~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~p~~~ 613 (670)
+|+++++...|..++..+|.....+-. ..+ .|+||.|.|+. .+.|+++|...|++ +.++..
T Consensus 1 iDLHG~~~~eA~~~l~~~l~~~~~~~~--------~~~------~II~G~G~hS~--~g~Lk~~V~~~L~~-~~~~~~ 61 (83)
T PF01713_consen 1 IDLHGLTVEEALRALEEFLDEARQRGI--------REL------RIITGKGNHSK--GGVLKRAVRRWLEE-GYQYEE 61 (83)
T ss_dssp EE-TTS-HHHHHHHHHHHHHHHHHTTH--------SEE------EEE--STCTCC--TSHHHHHHHHHHHH-THCCTT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHcCC--------CEE------EEEeccCCCCC--CCcHHHHHHHHHHh-hhccch
Confidence 588899988887776556655543222 222 58899997763 22399999999988 655543
No 266
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.93 E-value=15 Score=32.12 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=48.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 199 KACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
....+.|++++|.+.|+.+..+-. +-...+---++.+|.+.+++++|...+++.++....-..+-|...+.+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 344567888888888877776421 112345556778888888888888888888776554334455555555443
No 267
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.89 E-value=37 Score=36.05 Aligned_cols=60 Identities=12% Similarity=0.169 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 300 SSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
..|..++-+.|+.++|.+.|++|.+.... -+......||.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44555556677777777777777543211 1333455677777777777777777777644
No 268
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.63 E-value=32 Score=34.25 Aligned_cols=133 Identities=14% Similarity=0.140 Sum_probs=68.1
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005905 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182 (670)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 182 (670)
.+.|+.+.|...+.+....-...++.....|...| ||.-...+.+..+++.|...+++..+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~-------------------yn~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVC-------------------YNIGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHH-------------------HHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 46788888888888776643223333333443333 33333444333355555554444322
Q ss_pred C------CCCCCCCH-----HHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 183 E------VHPVDPDH-----ITIGALMKACANAGQVD---RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 183 ~------~~~~~pd~-----~t~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
- .....|+. .++..++.+|...+..+ +|.++.+.+... .+..+.++-.-+..+.+.++.+.+.++
T Consensus 65 ~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~ 143 (278)
T PF08631_consen 65 ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEI 143 (278)
T ss_pred HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHH
Confidence 1 01123332 23445555666555533 344454445332 222345555556666667777777777
Q ss_pred HHHHHHC
Q 005905 249 YDDMTKK 255 (670)
Q Consensus 249 ~~~m~~~ 255 (670)
+.+|...
T Consensus 144 L~~mi~~ 150 (278)
T PF08631_consen 144 LMRMIRS 150 (278)
T ss_pred HHHHHHh
Confidence 7777665
No 269
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.50 E-value=31 Score=33.99 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-c-CChHHHHHHHHHHHHC-CCCccHHHHHHHHH
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTK-KGVIPDEVFLSALIDFAGH-A-GKVEAAFEILQEAKNQ-GISVGIISYSSLMG 304 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~-~-g~~~~A~~i~~~m~~~-~~~~~~~~~~~li~ 304 (670)
|..|+. ++....+|+.+|+...- ..+--|..+...+++.... . ..+..-.++.+.+... +-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555543 34456678888874322 2344577777777777655 2 2344444555555543 34677788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChhHHHHHHHH-----HHhCCCCCCHHHHHHHH
Q 005905 305 ACSNAKNWQKALELYEHMKSI-KLKPTVSTMNALITALCDGDQLPKTMEVLSD-----MKSLGLCPNTITYSILL 373 (670)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~-----m~~~g~~p~~~t~~~ll 373 (670)
.+++.+++.+-.++++..... +...|...|..+|......|+..-...+.++ +++.|+..+...-..+-
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~ 285 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLS 285 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHH
Confidence 999999999999999876654 5667888999999999999997766665554 23344555544444433
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.44 E-value=32 Score=34.18 Aligned_cols=164 Identities=11% Similarity=0.039 Sum_probs=89.3
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCCHHH-----HHHHHHHHHHcC-CHHHHHHHHHHHHHc--------CCCCCH----
Q 005905 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHIT-----IGALMKACANAG-QVDRAREVYKMIHKY--------NIKGTP---- 226 (670)
Q Consensus 165 ~~~g~~~~A~~l~~~m~~~~~~~~pd~~t-----~~~li~~~~~~g-~~~~A~~~~~~m~~~--------~~~~~~---- 226 (670)
.+.|+.+.|..++.+.........|+... +-.+.......+ +++.|...+++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999998887642133454322 112222333455 787777777655332 112222
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHH
Q 005905 227 -EVYTIAINCCSQTGDWE---FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302 (670)
Q Consensus 227 -~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~l 302 (670)
.+...++.+|...+..+ +|..+++.+...... ...++..-+..+.+.++.+.+.+++..|...- ......+..+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 35566777777776654 455566666544332 23444455666666788888888888887763 2122333333
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHhCCCCCCH
Q 005905 303 MGAC---SNAKNWQKALELYEHMKSIKLKPTV 331 (670)
Q Consensus 303 i~~~---~~~g~~~~A~~~~~~m~~~~~~p~~ 331 (670)
+..+ .... ...|...+..+....+.|..
T Consensus 162 l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKS-PELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhhC-cHHHHHHHHHHHHHHhCCCh
Confidence 3333 3332 34455555555443334433
No 271
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.30 E-value=32 Score=33.94 Aligned_cols=145 Identities=14% Similarity=0.033 Sum_probs=92.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005905 163 ACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242 (670)
Q Consensus 163 ~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 242 (670)
.....|++.+|..+|....... .-+...-..+..+|...|+.+.|..++..+....-........+-|..+.+....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~---~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA---PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC---cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 4567888999999998887752 2234455667888899999999999998876543222222323345555555555
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHhcCCHH
Q 005905 243 EFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-SVGIISYSSLMGACSNAKNWQ 313 (670)
Q Consensus 243 ~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~ 313 (670)
.+...+-.+.-.. | |...-..+...+...|+.+.|++.+-.+.+.+. .-|...-..|+..+.-.|.-+
T Consensus 220 ~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 5554444444332 3 555556677788888999998887777665531 233445556666665555333
No 272
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.21 E-value=8.1 Score=35.46 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSALIDFAGHAGKVEAAFEILQEAK 288 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~i~~~m~ 288 (670)
..+..+.+.|++.|+.+.|++.|.++.+....+.. ..+-.+|..+.-.+++..+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34666777777777777777777777665444332 234556666666677766666655543
No 273
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.15 E-value=30 Score=33.42 Aligned_cols=59 Identities=14% Similarity=0.033 Sum_probs=37.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 005905 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY 220 (670)
Q Consensus 162 ~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~ 220 (670)
..-.+.|++++|.+.|+.+..+.+.-+-...+...++-++-+.++++.|....++..+.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33457788888888888887652221222344555566677777888887777766554
No 274
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.07 E-value=9.2 Score=37.11 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLK--PTVSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPN-TITYSILL 373 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-~~t~~~ll 373 (670)
.|+.-+..| +.|++..|...|....+..+. -....+--|..++...|++++|..+|..+.+. +-.|- ...+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566666544 566688888888877764311 11223344777888888888888888887763 11222 35566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 005905 374 VACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 374 ~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
.+..+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6777888888888888877764
No 275
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.43 E-value=66 Score=36.68 Aligned_cols=310 Identities=10% Similarity=0.055 Sum_probs=151.1
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCch-HHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHc
Q 005905 26 SEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMD-KVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (670)
Q Consensus 26 ~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~ 104 (670)
+.--..|+.++..|+++.|+++-..- |.. .++...-+.++...+.+..|-+++..+ ..+|..+.--|..
T Consensus 359 dE~R~vWk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~ 428 (911)
T KOG2034|consen 359 DEARDVWKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLE 428 (911)
T ss_pred cchHHHHHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHh
Confidence 34456899999999999999885433 221 233333455677778888888888776 3445555544555
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005905 105 SKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDR---VVFNALITACGQSGAVDRAFDVLAEMN 181 (670)
Q Consensus 105 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~ 181 (670)
..+.+ ++..|-.=+-..++|...+-..++..+.-.-.+++.-+.-.+|. ..|+.- .++..+-|....
T Consensus 429 ~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~---------~~~~~re~~~~~ 498 (911)
T KOG2034|consen 429 INQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLE---------YDEVQREFSKFL 498 (911)
T ss_pred cCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHH---------HHHHHHHHHHHH
Confidence 55555 55544322222355555544443333221111111100001111 111111 111111222211
Q ss_pred hCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005905 182 AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE 261 (670)
Q Consensus 182 ~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 261 (670)
. ..-+.....++...+...|+.+....+-.-|. .|..++..+.+.+.+++|++++..-. .|..
T Consensus 499 ~----~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~---------d~~~vv~~~~q~e~yeeaLevL~~~~----~~el 561 (911)
T KOG2034|consen 499 V----LHKDELNRETVYQLLASHGRQEELLQFANLIK---------DYEFVVSYWIQQENYEEALEVLLNQR----NPEL 561 (911)
T ss_pred H----hhHHhhhHHHHHHHHHHccCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhcc----chhh
Confidence 1 11222334445556667777777666554443 36678888899999999988876531 1111
Q ss_pred H-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 262 V-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKPTVSTMNAL 337 (670)
Q Consensus 262 ~-t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l 337 (670)
. -|...+ ....+.+-...+.. .+-..+......++..+.+.+ ....+....+--...-..-+...+|.+
T Consensus 562 ~yk~ap~L----i~~~p~~tV~~wm~---~~d~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~l 634 (911)
T KOG2034|consen 562 FYKYAPEL----ITHSPKETVSAWMA---QKDLDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSL 634 (911)
T ss_pred HHHhhhHH----HhcCcHHHHHHHHH---ccccCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHH
Confidence 1 111111 11222222222222 222223444455566665553 233444444433332224588889999
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005905 338 ITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381 (670)
Q Consensus 338 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 381 (670)
+..|+++.+-+.-..+-..+...+. ..+-....++.|.+.+.
T Consensus 635 l~lya~~~~~~ll~~le~~~~~~~~--~~YDl~~alRlc~~~~~ 676 (911)
T KOG2034|consen 635 LHLYAKHERDDLLLYLEIIKFMKSR--VHYDLDYALRLCLKFKK 676 (911)
T ss_pred HHHhhcCCccchHHHHHHHhhcccc--ceecHHHHHHHHHHhCc
Confidence 9998877665444333333222211 22222344555655554
No 276
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.22 E-value=33 Score=33.09 Aligned_cols=175 Identities=7% Similarity=-0.032 Sum_probs=95.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--
Q 005905 200 ACANAGQVDRAREVYKMIHKYNIKG---TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA-- 274 (670)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-- 274 (670)
.-.+.|++++|.+.|+.+..+- +. ...+--.++-++.+.+++++|+..+++....-..-...-|..-|.+.+..
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~ 121 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence 3447788888888888887642 22 23455556777788888888888888877654433334454445444421
Q ss_pred -----CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhCCCh
Q 005905 275 -----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM--NALITALCDGDQL 347 (670)
Q Consensus 275 -----g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~ 347 (670)
.+...+...+..+ ..+|.-|=...-...|......+. |.... ..+..-|.+.|.+
T Consensus 122 i~~~~rDq~~~~~A~~~f------------~~~i~ryPnS~Ya~dA~~~i~~~~------d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 122 IDDVTRDQSAARAAFAAF------------KELVQRYPNSRYAPDAKARIVKLN------DALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CCccccCHHHHHHHHHHH------------HHHHHHCCCCcchhhHHHHHHHHH------HHHHHHHHHHHHHHHHhcCh
Confidence 1222222222221 112222222222233333222222 11111 1234557788888
Q ss_pred hHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 348 PKTMEVLSDMKSLGLCPN---TITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 348 ~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
..|..-+++|.+. .+-. ...+-.+..+|.+.|..++|.+.-+-+..
T Consensus 184 ~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 184 VAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 8888888888875 2222 23445556677788888877776554433
No 277
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.93 E-value=14 Score=32.95 Aligned_cols=53 Identities=11% Similarity=0.014 Sum_probs=36.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC
Q 005905 34 RLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (670)
Q Consensus 34 ~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (670)
.-++.++.+++..+++.+.-.. |....+...-..++...|++.+|+++|+.+.
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3346778888888888876654 5555555555666777788888888887764
No 278
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.01 E-value=55 Score=36.29 Aligned_cols=185 Identities=16% Similarity=0.120 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-
Q 005905 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKA-CANAGQVDRAREVYKMIHK-------YNIKGTPEVYTIAINCCSQTG- 240 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~-~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~g- 240 (670)
...|.++|+.....+ .+.+-...-.....+ +....+.+.|...|+.+.+ .+ .+.....+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g-~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG-HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhc-chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 467888888877653 111111111122223 5567789999999988876 44 2345666777777643
Q ss_pred ----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH--hcCCHH
Q 005905 241 ----DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH-AGKVEAAFEILQEAKNQGISVGIISYSSLMGACS--NAKNWQ 313 (670)
Q Consensus 241 ----~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~ 313 (670)
+.+.|+.+|.+.-+.|.+ +...+-..+..... ..+...|.++|...-+.|.. +..-+.+++-... -..+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 677899999998888864 55554444433333 35678999999999998842 2222222222111 234688
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 005905 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362 (670)
Q Consensus 314 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 362 (670)
.|...|.+.-+.| .|-...--..+..+.. +..+.+.-.+..+.+.|.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 9999999988776 2222222222333444 777777777777776553
No 279
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=84.68 E-value=0.79 Score=38.66 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=33.8
Q ss_pred cccccCCCeeeccccCcchhhHHHHHHHHHHHHHhhhhCCCCCCceEeccCccc
Q 005905 526 CVSFKEIPVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKT 579 (670)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~~~~l~~~~~ 579 (670)
+++|+..+.++.+|..||.. .+..++...+|+|++..++++.+.
T Consensus 2 ~~~w~~~h~F~sgd~shp~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 45 (116)
T PF14432_consen 2 GCSWIEVHSFVSGDRSHPQS----------ELINKMKEEGYVPDTKEVGHDVDE 45 (116)
T ss_pred CCCccceEEEEeCCCcCccH----------HHHHHHHHcCCcchhhhhCCCchh
Confidence 46777778899999999987 333456678999999888776554
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.62 E-value=11 Score=34.47 Aligned_cols=63 Identities=8% Similarity=0.096 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHK 219 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd--~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 219 (670)
..+..+..-|.+.|+.+.|++.|.++... ...+. ...+-.+|....-.+++..+.....+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~--~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY--CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh--cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556666677777777777777776653 12222 22344555666666666666666555433
No 281
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=84.46 E-value=61 Score=34.54 Aligned_cols=162 Identities=13% Similarity=0.117 Sum_probs=86.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 240 (670)
|.-.-+..+...-+++=.+..+ +.||..+.-.+ -+--.+..+.+|+++|++..+.+- ..+..- ......|
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe----i~pdCAdAYIL-LAEEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g 244 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE----INPDCADAYIL-LAEEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHG 244 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH----hhhhhhHHHhh-cccccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhccc
Confidence 3333455555555555555554 45664433222 222345668889999888776541 111100 0000111
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSNAKNWQKALELY 319 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (670)
. .++.+..+...|-..+=..+..++-+.|+.++|.+.+++|.+.... ....+.-.|+.++...+.+.++..++
T Consensus 245 ~------~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 245 H------FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred c------hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 1 1122222222222333344555666778888888888888764322 23446667888888888888888888
Q ss_pred HHHHhCCC-CCCHHHHHHHH
Q 005905 320 EHMKSIKL-KPTVSTMNALI 338 (670)
Q Consensus 320 ~~m~~~~~-~p~~~~~~~li 338 (670)
.+-.+... +.-..+|+..+
T Consensus 319 ~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 319 AKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHhccccCCchHHHHHHHHH
Confidence 87654322 22344566544
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.43 E-value=2 Score=27.36 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 005905 157 FNALITACGQSGAVDRAFDVLAE 179 (670)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~l~~~ 179 (670)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555556666666666666655
No 283
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.40 E-value=13 Score=36.61 Aligned_cols=105 Identities=11% Similarity=0.093 Sum_probs=70.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 005905 255 KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV 331 (670)
Q Consensus 255 ~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 331 (670)
.|......+...++.......+++.+...+-.++... ..++...+ +.++.|.+ -+.+++..++..=...|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3444455666666666666677888877777665432 12222222 23333333 3566888888877788888999
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 005905 332 STMNALITALCDGDQLPKTMEVLSDMKSLG 361 (670)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 361 (670)
.+++.+|+.+.+.+++.+|.++...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999998888888876543
No 284
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.83 E-value=31 Score=30.75 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=8.4
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 005905 237 SQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~ 254 (670)
.+.|+|.+|..+|+++..
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 344445555555544433
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=83.77 E-value=2.4 Score=26.99 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 005905 94 TFNMLMSVCASSKDSEGAFQVLRLVQ 119 (670)
Q Consensus 94 ~y~~li~~~~~~g~~~~A~~~~~~m~ 119 (670)
+|+.|...|.+.|++++|+.+|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47888999999999999999999855
No 286
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.25 E-value=85 Score=35.30 Aligned_cols=77 Identities=9% Similarity=0.053 Sum_probs=43.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCH
Q 005905 31 SYNRLIRQGRISECIDLLEDMERKGLLDM--DKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDS 108 (670)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~g~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~ 108 (670)
.++-+++.+.+++|++.-+..... .|. ..-....++.-+...|++++|-...-.|...+..-|.--+..++..++.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhcccccc
Confidence 456688889999998887665432 221 1222223333344556677776665555555555555555555555544
Q ss_pred H
Q 005905 109 E 109 (670)
Q Consensus 109 ~ 109 (670)
.
T Consensus 440 ~ 440 (846)
T KOG2066|consen 440 T 440 (846)
T ss_pred c
Confidence 3
No 287
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.74 E-value=36 Score=30.70 Aligned_cols=133 Identities=10% Similarity=0.102 Sum_probs=75.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005905 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325 (670)
Q Consensus 246 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (670)
.+.++.+.+.++.|+...+..+++.+.+.|.+.... ++...++-+|.......+-.+. +.+..+.++=-+|...
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 355666777888888889999999998888865443 4444555555443333332222 2223333333333311
Q ss_pred CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 326 KLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQA 392 (670)
Q Consensus 326 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 392 (670)
=...+..++..+...|++-+|+++.+..... +......++.|..+.++...-..+|+-.
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1114566777888889998888888775321 1122234556666666654444444333
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.57 E-value=13 Score=32.66 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=54.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCC-HHHHHHHHHHHHcCCCHHHHHHHH
Q 005905 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPT-LSTFNMLMSVCASSKDSEGAFQVL 115 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~y~~li~~~~~~g~~~~A~~~~ 115 (670)
..++.+++..+++.|.-.. |....+...-..++...|++.+|.++|+.+.... ...|...+.++|-.-.-+-..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~ 99 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVH 99 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHH
Confidence 5788888888888886554 6666665555667778888888988888876432 334544444444322222223322
Q ss_pred -HHHHHcCCCCCHH
Q 005905 116 -RLVQEAGLKADCK 128 (670)
Q Consensus 116 -~~m~~~g~~pd~~ 128 (670)
+.++..|-.|+..
T Consensus 100 A~~~le~~~~~~a~ 113 (153)
T TIGR02561 100 ADEVLARDADADAV 113 (153)
T ss_pred HHHHHHhCCCHhHH
Confidence 4455555445444
No 289
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=82.20 E-value=46 Score=37.04 Aligned_cols=146 Identities=10% Similarity=0.109 Sum_probs=28.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005905 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326 (670)
Q Consensus 247 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 326 (670)
...++++.+-...+.....-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+..+.++|+......+-..+.
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll--- 465 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL--- 465 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH---
Confidence 3344444333334555566666777777777777766665543311 12234444455555555544444433333
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005905 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC---ERKDDVEVGLMLLSQAKEDGVIPNLVM 403 (670)
Q Consensus 327 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~~~~~m~~~g~~p~~~~ 403 (670)
..|+..|... ..++.+.+...-+-.+..+|...+.-+ .+.|+..+|.+.+-.+.+.++.|....
T Consensus 466 ------------~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~ 532 (566)
T PF07575_consen 466 ------------EEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSFW 532 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------HHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHHH
Confidence 2333333211 122222211111111222222222211 244777778777777777777777665
Q ss_pred HHHHHHH
Q 005905 404 FKCIIGM 410 (670)
Q Consensus 404 ~~~li~~ 410 (670)
..-|.++
T Consensus 533 ~~LL~d~ 539 (566)
T PF07575_consen 533 PLLLCDA 539 (566)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 5555554
No 290
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=82.16 E-value=34 Score=29.91 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=54.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 238 (670)
.....+.|++++|.+.|+.+...-..-.-....-..++.+|.+.++++.|...++..++........-|-..+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 344567899999999999998762111122345667889999999999999999999887633222445544555443
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=80.92 E-value=1.3e+02 Score=35.75 Aligned_cols=138 Identities=22% Similarity=0.270 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITI----GALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
.|.-.++---+.|.+.+|+.++ .|+...+ .+....+.....+++|--.|+..-+. .-
T Consensus 910 ~~~e~~n~I~kh~Ly~~aL~ly----------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ek 970 (1265)
T KOG1920|consen 910 YFPECKNYIKKHGLYDEALALY----------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EK 970 (1265)
T ss_pred ccHHHHHHHHhcccchhhhhee----------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HH
Confidence 4445555556677788887765 3444444 44445555678888888888665332 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEV--FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
.+.+|..+|+|.+|+.+..+|.... |.. +-..|+.-+...++.-+|-++..+.... | .-.+..|++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhH
Confidence 5778889999999999998875431 222 2256777888889988888888776543 1 2344567788
Q ss_pred CCHHHHHHHHHHHH
Q 005905 310 KNWQKALELYEHMK 323 (670)
Q Consensus 310 g~~~~A~~~~~~m~ 323 (670)
..|++|.++-..-.
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 88999988876544
No 292
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.61 E-value=1e+02 Score=34.50 Aligned_cols=303 Identities=14% Similarity=0.108 Sum_probs=163.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHh----cC---CCCHHHHHHHHHHHHhc
Q 005905 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVD--AMFE----NV---KPDRVVFNALITACGQS 167 (670)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~--~~~~----~~---~~~~~~~~~li~~~~~~ 167 (670)
.+|.-+...+.+..|+++-..+...-..- ..+|.....-+.+..+.. .+.+ .+ ....++|..+.+-....
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 45666777788888888876664322222 566777777776664321 1222 11 24567788888888889
Q ss_pred CCHHHHHHHHHHHhhCCCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005905 168 GAVDRAFDVLAEMNAEVHPVD--PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245 (670)
Q Consensus 168 g~~~~A~~l~~~m~~~~~~~~--pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (670)
|+.+-|..+++.=...+..+. .+..-+...+.-+...|+.+....++-.+.+.- +...+... ..+...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchhh
Confidence 999999888764322211100 011123344555666677777766666555431 11122211 2234556
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-H----HCCCCccHHHHHHHHHHHHhcCCHH-------
Q 005905 246 CSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEA-K----NQGISVGIISYSSLMGACSNAKNWQ------- 313 (670)
Q Consensus 246 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m-~----~~~~~~~~~~~~~li~~~~~~g~~~------- 313 (670)
..+|.+..+.. |.. .+-+.|-...+...+-.++-+- . ..+..|+ .......|++.....
T Consensus 592 ~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 592 LSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred hHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHH
Confidence 67776655431 111 1222333333333222222211 0 1122232 233444455444321
Q ss_pred ---HHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 314 ---KALELYEHMK-SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389 (670)
Q Consensus 314 ---~A~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 389 (670)
+-.++++.+. +.+..-.--|.+--+.-+...|+-.+|.++-.+.+ -||...|..=+.+++..+++++-.++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 1122222222 12323344456666777888999999999888776 589999999999999999999988877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhhHHHHHHhHHHhhhhcCCC
Q 005905 390 SQAKEDGVIPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGR 432 (670)
Q Consensus 390 ~~m~~~g~~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~ 432 (670)
+.++. +.-|.-++..|.+ ++...||...+....
T Consensus 739 kskks------PIGy~PFVe~c~~----~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 739 KSKKS------PIGYLPFVEACLK----QGNKDEAKKYIPRVG 771 (829)
T ss_pred hccCC------CCCchhHHHHHHh----cccHHHHhhhhhccC
Confidence 65543 2334456666654 344444444444433
No 293
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.60 E-value=34 Score=29.99 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005905 334 MNALITALCDGDQLPKTMEVLSDMKSLG-----LCPNTITYSILLVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKCI 407 (670)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~l 407 (670)
.|+++.-.+..+.+.-.+.+++.+.... -.-+..+|.+++.+.++..- ---+..+|+-|++.+.+++...|.++
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4556655565666666666665553210 02345568888888776666 44566777888887788888888888
Q ss_pred HHHHHh
Q 005905 408 IGMCSR 413 (670)
Q Consensus 408 i~~~~r 413 (670)
|..+.|
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 888765
No 294
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=79.12 E-value=69 Score=31.59 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhCCCCCCCCH-----------------HHHHHHHHHHHHcCCHHHHH
Q 005905 150 VKPDRVVFNALITACGQS-GAVDRAFDVLAEMNAEVHPVDPDH-----------------ITIGALMKACANAGQVDRAR 211 (670)
Q Consensus 150 ~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~~~~~~pd~-----------------~t~~~li~~~~~~g~~~~A~ 211 (670)
+.-|+.-|-+.+...-.- -.++++.++....... .-|+. .+++.+.+.|..+|.+.+|.
T Consensus 223 ~k~Dv~e~es~~rqi~~inltide~kelv~~ykgd---yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi 299 (361)
T COG3947 223 PKYDVQEYESLARQIEAINLTIDELKELVGQYKGD---YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAI 299 (361)
T ss_pred ccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCC---cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 345666676666554432 3366666666655321 12211 12233345566677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252 (670)
Q Consensus 212 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 252 (670)
++.+.....+ +.+...|-.++..+...||--.|.+-++.+
T Consensus 300 ~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 300 QLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 7776666655 556666667777777777766666655555
No 295
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.10 E-value=20 Score=33.24 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=9.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHH
Q 005905 294 VGIISYSSLMGACSNAKNWQKA 315 (670)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A 315 (670)
+|+..+.+|+..|.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444444444443
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.09 E-value=3.4 Score=25.96 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 223 KGTPEVYTIAINCCSQTGDWEFAC 246 (670)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~ 246 (670)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445666666666666666666654
No 297
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.80 E-value=55 Score=32.33 Aligned_cols=137 Identities=16% Similarity=0.191 Sum_probs=80.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHH
Q 005905 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN-AG-QVDRAREVYKMIHK-YNIKGTPEVYTIAINCCSQTGDWE 243 (670)
Q Consensus 167 ~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~-~g-~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~ 243 (670)
+..+.+|+.+|+....+ ..+--|......+++.... .+ ....-.++.+.+.. .+-.++..+...+|..++..++|.
T Consensus 141 N~~Vv~aL~L~~~~~~~-~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPD-ESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hHHHHHHHHHhhccCcc-cceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 33466777777743221 1244566666666665554 22 22333333344433 234566677777888888888888
Q ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----HHHCCCCccHHHHHHHHH
Q 005905 244 FACSVYDDMTKK-GVIPDEVFLSALIDFAGHAGKVEAAFEILQE-----AKNQGISVGIISYSSLMG 304 (670)
Q Consensus 244 ~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~-----m~~~~~~~~~~~~~~li~ 304 (670)
.-.++++.-... +..-|...|..+|......|+..-..++..+ +++.++..+...-.+|-.
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 888877776554 4555777788888888888887655555443 233444444444444433
No 298
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.58 E-value=18 Score=38.96 Aligned_cols=130 Identities=21% Similarity=0.197 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHH
Q 005905 130 YTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDR 209 (670)
Q Consensus 130 ~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~ 209 (670)
.+.++..+.+.|..+++++....+..-| ....+.|+++.|.++-.+.. +..-|..|.++....|++..
T Consensus 617 rt~va~Fle~~g~~e~AL~~s~D~d~rF----elal~lgrl~iA~~la~e~~--------s~~Kw~~Lg~~al~~~~l~l 684 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELSTDPDQRF----ELALKLGRLDIAFDLAVEAN--------SEVKWRQLGDAALSAGELPL 684 (794)
T ss_pred hhhHHhHhhhccchHhhhhcCCChhhhh----hhhhhcCcHHHHHHHHHhhc--------chHHHHHHHHHHhhcccchh
Confidence 3445555555555555554321111111 22334566666666554432 33456666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005905 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286 (670)
Q Consensus 210 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~ 286 (670)
|.+.|..... |..|+-.+...|+-+....+-....+.|.. |...+ +|...|+++++.+++..
T Consensus 685 A~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N~AF~-----~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 685 ASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-NLAFL-----AYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-chHHH-----HHHHcCCHHHHHHHHHh
Confidence 6666654433 334555555556655444444444444432 22222 23345666666655543
No 299
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.32 E-value=1e+02 Score=33.01 Aligned_cols=179 Identities=10% Similarity=0.083 Sum_probs=121.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHH
Q 005905 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302 (670)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~l 302 (670)
..|....-+++..++++-.+.-+..+..+|...|- +...|..++++|... ..++-..+++++.+..+ .|++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 34556677888888888888888888889888764 677888888888887 66778888888887753 345555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 005905 303 MGACSNAKNWQKALELYEHMKSIKLK-----PTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVAC 376 (670)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~ 376 (670)
...|.+ ++.+.+...|.++...=++ .-...|.-++..- ..+.+..+.+..+... .|..--.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 666665 7788888888877542111 0122455554322 4556677777777665 45555566677777788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409 (670)
Q Consensus 377 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 409 (670)
....++++|++++..+.+.. .-|...-.-+|.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 88899999999998777653 233333334443
No 300
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=77.44 E-value=5.1 Score=24.76 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNA 182 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 182 (670)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666666677777777777766655
No 301
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.41 E-value=0.92 Score=39.98 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=21.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~ 284 (670)
+.+.+.+.+.....+++.+...+...+....+.++..|++.+..+...+++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 333344444444444444444333333444444444444444434444333
No 302
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=77.40 E-value=5.2 Score=24.74 Aligned_cols=25 Identities=12% Similarity=0.014 Sum_probs=9.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 334 MNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
|..+...|...|++++|+..|++..
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHH
Confidence 3333444444444444444444433
No 303
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.99 E-value=57 Score=29.51 Aligned_cols=128 Identities=12% Similarity=0.119 Sum_probs=70.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH--HHHHhCCCh
Q 005905 272 GHAGKVEAAFEILQEAKNQGISVGII-SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS-TMNALI--TALCDGDQL 347 (670)
Q Consensus 272 ~~~g~~~~A~~i~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li--~~~~~~g~~ 347 (670)
++.+..++|+.-|..+.+.|...-++ .-..........|+...|...|.++-.....|-.. -.-.|= -.+..+|-+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566667777777776665332221 11222334456677777777777776543333322 111111 234467777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005905 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIP 399 (670)
Q Consensus 348 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p 399 (670)
++.....+-+-..|-+-....-..|--+-.+.|++..|.+.|..+....-.|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 7777766666554433233333345555667888888888887766543334
No 304
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=75.47 E-value=28 Score=27.96 Aligned_cols=64 Identities=19% Similarity=0.276 Sum_probs=49.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 005905 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGMC 411 (670)
Q Consensus 346 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~ 411 (670)
+.-++.+-++.+....+.|+.....+.++||.+.+++..|.++|+-.+. .| .+...|..+++-+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHHHH
Confidence 3445666677777777899999999999999999999999999987763 33 3556788887654
No 305
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.64 E-value=98 Score=30.59 Aligned_cols=69 Identities=9% Similarity=0.010 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 005905 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-----DGVIPNLVMF 404 (670)
Q Consensus 335 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~ 404 (670)
+.....|..+|.+.+|.++-++..... +.+...+-.++..+...|+--.+.+-++.+.+ .|+..+...+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 334445555666666666655555431 23444444555556666665555555444432 3555554443
No 306
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=73.54 E-value=1.1e+02 Score=31.17 Aligned_cols=228 Identities=14% Similarity=0.077 Sum_probs=129.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhc
Q 005905 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY--NIKGT---PEVYTIAINCCSQT 239 (670)
Q Consensus 165 ~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~---~~~~~~li~~~~~~ 239 (670)
.+..+.++|+..+.+....-....--..+|..+..+.++.|.+++++..--...+. ..... -..|-.+..++-+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777766655431011111245666777788888877765543211110 00111 13445555666666
Q ss_pred CCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCccHHHHHHHHHHHHhcC
Q 005905 240 GDWEFACSVYDDMTKK-GVIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-----ISVGIISYSSLMGACSNAK 310 (670)
Q Consensus 240 g~~~~A~~l~~~m~~~-g~~p---~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~-----~~~~~~~~~~li~~~~~~g 310 (670)
.++.+++.+-..-... |..| .-....++-.+....+.++++++.|+...+.- ......+|..|...|.+..
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 6666666555443321 2222 11233345566667778899999888776532 1233568889999999999
Q ss_pred CHHHHHHHHHHHHh----CCCCCCH-HHH-----HHHHHHHHhCCChhHHHHHHHHHHh----CCCCCC-HHHHHHHHHH
Q 005905 311 NWQKALELYEHMKS----IKLKPTV-STM-----NALITALCDGDQLPKTMEVLSDMKS----LGLCPN-TITYSILLVA 375 (670)
Q Consensus 311 ~~~~A~~~~~~m~~----~~~~p~~-~~~-----~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~ll~a 375 (670)
++++|.-+..+..+ .++. |. .-| -.|..++-..|..-+|.+.-++..+ .|-+|- ......+.+.
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 99998766554432 2322 22 122 2345567788888888887777543 342222 2233345566
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 005905 376 CERKDDVEVGLMLLSQAK 393 (670)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~ 393 (670)
|...|+.+.|+.-|+...
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 888899999888776543
No 307
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=73.33 E-value=1.1 Score=39.35 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=45.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005905 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381 (670)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 381 (670)
++..+.+.+..+....+++.+...+...+....+.++..|++.+..++.+++++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4455555566666666666666544444566666666666666666666666551 111222345566666666
Q ss_pred HHHHHHHHHH
Q 005905 382 VEVGLMLLSQ 391 (670)
Q Consensus 382 ~~~a~~~~~~ 391 (670)
++++..++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.29 E-value=7.8 Score=25.09 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 333 TMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
+++.|...|...|++++|+.++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 45555555555555555555555543
No 309
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.25 E-value=72 Score=28.90 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=21.2
Q ss_pred cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323 (670)
Q Consensus 274 ~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (670)
.|.+++.....+.+-..+-+.-...-.+|.-+-.+.|++.+|.+.|..+.
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 34444444444433333322222333344444445555555555555544
No 310
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.14 E-value=1.7e+02 Score=33.03 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=42.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCccHHHHHHHHHHHHh---c
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-ISVGIISYSSLMGACSN---A 309 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~-~~~~~~~~~~li~~~~~---~ 309 (670)
.++.-+|+++.|.+.+.+ ..+...|.+++...+.-|+-.+-.+... ..+.... -.+...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445678999999998877 2333456677766665554332222211 2222211 01112557788888876 4
Q ss_pred CCHHHHHHHHHHHHhC
Q 005905 310 KNWQKALELYEHMKSI 325 (670)
Q Consensus 310 g~~~~A~~~~~~m~~~ 325 (670)
.+..+|.+.|--+...
T Consensus 341 td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 341 TDPREALQYLYLICLF 356 (613)
T ss_dssp T-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHHc
Confidence 5788888888877654
No 311
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=72.54 E-value=6.1 Score=24.79 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHhCCChhHH
Q 005905 330 TVSTMNALITALCDGDQLPKT 350 (670)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A 350 (670)
|...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 334444444444444444443
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=71.70 E-value=9.9 Score=24.57 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
..+++.|...|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888888888999998888887653
No 313
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.97 E-value=55 Score=26.57 Aligned_cols=87 Identities=10% Similarity=0.071 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 005905 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLV 118 (670)
Q Consensus 39 g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m 118 (670)
.+.++|.-+-+.+...+ .....+...-+.....+|++++|..+.+..+.||...|-+|-. .+.|-.+....-+.+|
T Consensus 19 HcHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 19 HCHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRL 94 (115)
T ss_pred hHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 35678888877776665 1233333222344567899999999999999999999977654 3567777777777777
Q ss_pred HHcCCCCCHHHH
Q 005905 119 QEAGLKADCKLY 130 (670)
Q Consensus 119 ~~~g~~pd~~~~ 130 (670)
-.+| .|..-.|
T Consensus 95 a~sg-~p~lq~F 105 (115)
T TIGR02508 95 AASG-DPRLQTF 105 (115)
T ss_pred HhCC-CHHHHHH
Confidence 7776 3443333
No 314
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.90 E-value=48 Score=26.91 Aligned_cols=86 Identities=19% Similarity=0.101 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 005905 277 VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSD 356 (670)
Q Consensus 277 ~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 356 (670)
-++|..|-+.+...+-. ...+--.-+..+...|+|++|..+.+.+ +.||...|-+|-. .+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34555555555444311 2222222234455667777776665554 2566666655533 345555666666666
Q ss_pred HHhCCCCCCHHHHH
Q 005905 357 MKSLGLCPNTITYS 370 (670)
Q Consensus 357 m~~~g~~p~~~t~~ 370 (670)
|..+| .|...+|.
T Consensus 94 la~sg-~p~lq~Fa 106 (115)
T TIGR02508 94 LAASG-DPRLQTFV 106 (115)
T ss_pred HHhCC-CHHHHHHH
Confidence 66554 45444443
No 315
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=70.65 E-value=9.6 Score=23.33 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=8.2
Q ss_pred HHHHHHhCCChhHHHHHHHHH
Q 005905 337 LITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 337 li~~~~~~g~~~~A~~l~~~m 357 (670)
+...|...|++++|++.|++.
T Consensus 7 lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 7 LGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 333344444444444444443
No 316
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.41 E-value=40 Score=31.35 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=49.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChHH
Q 005905 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK---GVIPDEVFLSALIDFAGHAGKVEA 279 (670)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~ 279 (670)
+.|+ +.|.+.|-.+...+.-.++....+|...|. ..|.+++..++....+. +-.+|...+.+|++.+-+.++++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3343 456666666666655555555555555554 56677777777766542 335677777777777777777776
Q ss_pred HH
Q 005905 280 AF 281 (670)
Q Consensus 280 A~ 281 (670)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
No 317
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=69.56 E-value=1e+02 Score=29.09 Aligned_cols=180 Identities=16% Similarity=0.088 Sum_probs=106.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005905 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284 (670)
Q Consensus 205 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~ 284 (670)
|-...|+.-|.+..... +.-+.+||-+---+...|+++.|.+.|+...+.+..-+-...|.-|..| -.|++..|.+=+
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHHHH
Confidence 44444444455544433 3346789998888899999999999999998886654444444444333 357888887666
Q ss_pred HHHHHCC-CCccHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 005905 285 QEAKNQG-ISVGIISYSSLMGACSNAKNWQKALELY-EHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGL 362 (670)
Q Consensus 285 ~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 362 (670)
...-+.+ -.|-...|--++. ..-+..+|..-+ ++.. ..|..-|...|..|.-..-.+ ..+|++.+.. -
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~-a 226 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISE--ETLMERLKAD-A 226 (297)
T ss_pred HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccH--HHHHHHHHhh-c
Confidence 6555543 2233334433332 333556665443 3333 335555665555554332222 2334444432 1
Q ss_pred CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 363 CPN-------TITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 363 ~p~-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
.-| ..||--+..-+...|++++|..+|+-.+..+
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 211 3466677777888999999999999877755
No 318
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=68.57 E-value=25 Score=28.53 Aligned_cols=17 Identities=12% Similarity=0.135 Sum_probs=5.6
Q ss_pred HHHHHHHHHhcCChHHH
Q 005905 264 LSALIDFAGHAGKVEAA 280 (670)
Q Consensus 264 ~~~li~~~~~~g~~~~A 280 (670)
..+.+.+|.+.+++..|
T Consensus 48 i~aALrAcRRvND~a~A 64 (108)
T PF02284_consen 48 IEAALRACRRVNDFALA 64 (108)
T ss_dssp HHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHhhhHHHH
Confidence 33333333333333333
No 319
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=68.50 E-value=11 Score=23.00 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNA 182 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 182 (670)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345555666666666666666666554
No 320
>PRK09687 putative lyase; Provisional
Probab=67.29 E-value=1.4e+02 Score=29.75 Aligned_cols=233 Identities=13% Similarity=0.004 Sum_probs=110.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCCHH
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV----DRAREVYKMIHKYNIKGTPE 227 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~~~ 227 (670)
+|.......+.++...|. +++...+..+.. .+|...=...+.+++..|+. +++...+..+... .++..
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~-----~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS-----SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh-----CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 444444444555555443 233333333332 22333333444555555542 3445555444222 34445
Q ss_pred HHHHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHH
Q 005905 228 VYTIAINCCSQTGDW-----EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302 (670)
Q Consensus 228 ~~~~li~~~~~~g~~-----~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~l 302 (670)
+-...+.+++..+.. ..+...+...... ++..+=...+.++++.++ ..+...+-.+.+. +|..+-...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A 179 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhhC---CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHH
Confidence 555555555544321 1223333222222 244444455556665555 3455555555442 333444455
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005905 303 MGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381 (670)
Q Consensus 303 i~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 381 (670)
+.++.+.+ ....+...+..+.. .+|...-...+.++++.|+ ..|+..+-+..+.+ + .....+.+++..|.
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCC
Confidence 55555542 13345544444443 3455566666677777666 45555555555432 2 23356666777776
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 382 VEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411 (670)
Q Consensus 382 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (670)
. +|...+..+.+.. ||..+-...+..|
T Consensus 251 ~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 251 K-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred H-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 4 5666666666532 4555554444443
No 321
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.55 E-value=91 Score=27.40 Aligned_cols=82 Identities=13% Similarity=0.202 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhCCC-hhHHHHHHHHHHhCCCCCCHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIK-----LKPTVSTMNALITALCDGDQ-LPKTMEVLSDMKSLGLCPNTITYSI 371 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ 371 (670)
..|.++.-.+.-++......+++.+.... -..+..+|++++.+.++..- ---+..+|+.|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34666666666666666666666553211 02355678888888866555 3446778888888788888899999
Q ss_pred HHHHHHhc
Q 005905 372 LLVACERK 379 (670)
Q Consensus 372 ll~a~~~~ 379 (670)
++.+|.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 99888765
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=66.39 E-value=33 Score=34.39 Aligned_cols=89 Identities=15% Similarity=0.050 Sum_probs=56.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 239 (670)
.+-|.+.|.+++|+.+|..-.. +.| |.+++..-..+|.+...+..|+.--......+ ..-...|..-+.+-...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia----~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA----VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc----cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence 3568889999999999988765 356 78888888889999888887776665555443 11112233333333333
Q ss_pred CCHHHHHHHHHHHHH
Q 005905 240 GDWEFACSVYDDMTK 254 (670)
Q Consensus 240 g~~~~A~~l~~~m~~ 254 (670)
|...+|.+=++..++
T Consensus 179 g~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLA 193 (536)
T ss_pred hhHHHHHHhHHHHHh
Confidence 444555544444443
No 323
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=64.73 E-value=22 Score=35.59 Aligned_cols=49 Identities=24% Similarity=0.204 Sum_probs=31.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRF 83 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 83 (670)
|.+.++|.+++|++.|..-.... |.+.+++..-..+|.+.+.+..|..-
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~D 153 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEED 153 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHh
Confidence 44556777888887777766554 66666666555666666666555443
No 324
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.86 E-value=40 Score=31.71 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=24.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 198 MKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250 (670)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 250 (670)
++.+.+.+++++|+....+-++.. +.|...-..++..||-.|+|++|..-++
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 344444455555555544433332 3333344444555555555555544443
No 325
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.54 E-value=1e+02 Score=28.72 Aligned_cols=88 Identities=13% Similarity=0.039 Sum_probs=43.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005905 164 CGQSGAVDRAFDVLAEMNAEVHPVDPD-----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ 238 (670)
Q Consensus 164 ~~~~g~~~~A~~l~~~m~~~~~~~~pd-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 238 (670)
+..+|++++|..-|...... +++. .+.|..-..++.+.+.++.|++--....+.+ +........-..+|.+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~---cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES---CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh---CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 44566666666666666553 2221 1223333345555666666655555555544 1111111122334555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 005905 239 TGDWEFACSVYDDMTKK 255 (670)
Q Consensus 239 ~g~~~~A~~l~~~m~~~ 255 (670)
...+++|++=|.++++.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 55566666666665554
No 326
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.31 E-value=1.3e+02 Score=27.47 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----C-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005905 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG----D-------WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275 (670)
Q Consensus 207 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~-------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 275 (670)
+++|..-|++....+ +....++..+-.+|...+ + +++|...|++.... .|+..+|+.-+..+
T Consensus 51 iedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~---- 123 (186)
T PF06552_consen 51 IEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA---- 123 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH----
Confidence 344444455555443 223355555555554432 3 34444444444443 67888888877766
Q ss_pred ChHHHHHHHHHHHHCCC
Q 005905 276 KVEAAFEILQEAKNQGI 292 (670)
Q Consensus 276 ~~~~A~~i~~~m~~~~~ 292 (670)
++|-++|.++.+++.
T Consensus 124 --~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 --AKAPELHMEIHKQGL 138 (186)
T ss_dssp --HTHHHHHHHHHHSSS
T ss_pred --HhhHHHHHHHHHHHh
Confidence 346777777777654
No 327
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.94 E-value=49 Score=34.80 Aligned_cols=125 Identities=17% Similarity=0.181 Sum_probs=83.3
Q ss_pred HHHHHhcCCHHHHHH-HHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005905 161 ITACGQSGAVDRAFD-VLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239 (670)
Q Consensus 161 i~~~~~~g~~~~A~~-l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 239 (670)
|.--...|++-.|-+ +|.-+... +-.|+.+-.-+.| +...|+++.+.+.+...... +.....+-..++....+.
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhch
Confidence 333445677665544 44444432 3456655544443 56789999999888766543 233346778888888999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005905 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291 (670)
Q Consensus 240 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~ 291 (670)
|++++|..+-.-|+...+. +...........-..|-++++...++++...+
T Consensus 371 ~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999999888877665 44444444444455677889998888887655
No 328
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=60.25 E-value=58 Score=30.66 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 005905 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK--LKPTVSTMNALITA 340 (670)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~ 340 (670)
.+..++.+.+.+.+.+|+...++-++.. +.|..+-..+++.||-.|++++|..-++-.-+.. ..+-..+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3444555666677777777777666654 5555666677777777777777776665544331 12334455555543
No 329
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=59.60 E-value=50 Score=28.24 Aligned_cols=42 Identities=10% Similarity=0.167 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHh
Q 005905 43 ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFF 84 (670)
Q Consensus 43 ~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 84 (670)
++.++|..|...|+-...+.++...+..+...|++++|.++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455555555544443333334433444444444444444444
No 330
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.80 E-value=1.4e+02 Score=27.73 Aligned_cols=87 Identities=10% Similarity=0.106 Sum_probs=58.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHH--HHHHHHHHHcCCCHHHHH
Q 005905 36 IRQGRISECIDLLEDMERKGLL-DMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLST--FNMLMSVCASSKDSEGAF 112 (670)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~g~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--y~~li~~~~~~g~~~~A~ 112 (670)
..+|++++|..-++.....-.. .........+.+.....+.+++|+..++....++-.+ ...-..++...|+-++|+
T Consensus 100 ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar 179 (207)
T COG2976 100 VEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEAR 179 (207)
T ss_pred HhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHH
Confidence 3678888888888877643210 1122334446666677888888888887766553222 333346788888989999
Q ss_pred HHHHHHHHcC
Q 005905 113 QVLRLVQEAG 122 (670)
Q Consensus 113 ~~~~~m~~~g 122 (670)
.-|...+..+
T Consensus 180 ~ay~kAl~~~ 189 (207)
T COG2976 180 AAYEKALESD 189 (207)
T ss_pred HHHHHHHHcc
Confidence 9888888875
No 331
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=56.80 E-value=3.3e+02 Score=30.66 Aligned_cols=43 Identities=28% Similarity=0.356 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc
Q 005905 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANA 204 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~ 204 (670)
++|--|.++|++++|.++..+.... .......|...+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~---~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ---FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG---S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh---hcchhHHHHHHHHHHHhC
Confidence 4666777888888888888555443 334445666677777654
No 332
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=56.25 E-value=1.1e+02 Score=25.00 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411 (670)
Q Consensus 349 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (670)
+..+-++.+....+.|+.....+.|.||.+.+++..|.++|+-.+.. +.+....|..+++-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 55666677777788999999999999999999999999999887753 223333888888754
No 333
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=55.64 E-value=3.5e+02 Score=30.50 Aligned_cols=126 Identities=17% Similarity=0.144 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHCC---CCccHHHHHHH
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKK----GVIPDEVFLSAL-IDFAGHAGKVEAAFEILQEAKNQG---ISVGIISYSSL 302 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~l-i~~~~~~g~~~~A~~i~~~m~~~~---~~~~~~~~~~l 302 (670)
.++..|.+.+... |+...++.++. +..+-...|.-+ +..+...++...|.+.++.+...- ..|-..++..+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 3445555554444 55555554432 111222233332 222222356666666665554321 23334444444
Q ss_pred HHHHH--hcCCHHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--hCCChhHHHHHHHHH
Q 005905 303 MGACS--NAKNWQKALELYEHMKSIK---------LKPTVSTMNALITALC--DGDQLPKTMEVLSDM 357 (670)
Q Consensus 303 i~~~~--~~g~~~~A~~~~~~m~~~~---------~~p~~~~~~~li~~~~--~~g~~~~A~~l~~~m 357 (670)
+.+.. +.+..+++.+..+.+.... ..|-..+|..++..++ ..|+++.+...++++
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44332 3343444544444442110 1234555655555433 455555555555444
No 334
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.58 E-value=2.1e+02 Score=27.95 Aligned_cols=201 Identities=14% Similarity=0.115 Sum_probs=111.8
Q ss_pred CCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC-
Q 005905 150 VKPDRVVFNALITA-CGQSGAVDRAFDVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKY---NI- 222 (670)
Q Consensus 150 ~~~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~~~~~~pd--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~---~~- 222 (670)
-+||+..-|..-.+ -.+...+++|+.-|++..+.. |-+-+ -.....++....+.|++++..+.|.++... .+
T Consensus 22 sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelE-gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 22 SEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELE-GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCcchHhhhhccccccccCHHHHHHHHHHHHhcc-cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 34555543322211 123457889999999887641 21111 123345678888999999998888887531 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----
Q 005905 223 -KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK-----GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI---- 292 (670)
Q Consensus 223 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~---- 292 (670)
.-+..+.|++++.-+...+.+.-.++|+.-++. +-..--.|-.-|-..|...+.+....++++++....-
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 113456777877777666665555555433211 1111112334455566666777777777777654311
Q ss_pred -------CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHH-----HHhCCChhHHHH
Q 005905 293 -------SVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKPTVSTMNALITA-----LCDGDQLPKTME 352 (670)
Q Consensus 293 -------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~-----~~~~g~~~~A~~ 352 (670)
.--..+|..=|.+|....+-..-..+|++..... --|.+.... .|.- +.+.|++++|..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 1114567777888888887777777777654321 123443332 2332 235567776653
No 335
>PRK09687 putative lyase; Provisional
Probab=55.20 E-value=2.3e+02 Score=28.24 Aligned_cols=197 Identities=12% Similarity=0.019 Sum_probs=118.5
Q ss_pred HHHHHHHHhcCC----HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHcCCCCCHHH
Q 005905 158 NALITACGQSGA----VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-----DRAREVYKMIHKYNIKGTPEV 228 (670)
Q Consensus 158 ~~li~~~~~~g~----~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~-----~~A~~~~~~m~~~~~~~~~~~ 228 (670)
...+.++++.|+ .++++.++..+... .||...-...+.+++..+.- ..+...+..... .++..+
T Consensus 72 ~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~----D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~V 144 (280)
T PRK09687 72 DIGADILSQLGMAKRCQDNVFNILNNLALE----DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNV 144 (280)
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHhc----CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHH
Confidence 334444555554 24567777666332 45655555555555554321 122333322222 345677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLMGACS 307 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~ 307 (670)
-...+.++++.++ ..+...+-.+.+. +|...-...+.++++.+ ....+...+..+.. .++..+-...+.++.
T Consensus 145 R~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg 217 (280)
T PRK09687 145 RFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLA 217 (280)
T ss_pred HHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHH
Confidence 7778888888887 4566666666653 34455555556666553 24456666666653 456777788888999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377 (670)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 377 (670)
+.|+. .|...+-...+. ++ ..-..+.++...|.. +|+..+.++... .||...-...+.+|.
T Consensus 218 ~~~~~-~av~~Li~~L~~---~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 218 LRKDK-RVLSVLIKELKK---GT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred ccCCh-hHHHHHHHHHcC---Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 99885 455555555443 33 234678888888885 788888888864 467776666666664
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=55.15 E-value=34 Score=20.82 Aligned_cols=27 Identities=22% Similarity=0.260 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
+|..+...|.+.|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555556666666666666655543
No 337
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=55.14 E-value=16 Score=22.09 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=13.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC
Q 005905 160 LITACGQSGAVDRAFDVLAEMNAE 183 (670)
Q Consensus 160 li~~~~~~g~~~~A~~l~~~m~~~ 183 (670)
+..+|.+.|++++|.+.|+++...
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555556666666666666543
No 338
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.32 E-value=1.6e+02 Score=27.39 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=10.1
Q ss_pred HHHhCCChhHHHHHHHHHHh
Q 005905 340 ALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 340 ~~~~~g~~~~A~~l~~~m~~ 359 (670)
+|.+..++++|++=|.++.+
T Consensus 177 ayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHH
Confidence 34444455555555555544
No 339
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=54.27 E-value=29 Score=21.16 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNA 182 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 182 (670)
+|..+...|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666667777777777777766654
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.39 E-value=1.4e+02 Score=32.66 Aligned_cols=131 Identities=22% Similarity=0.236 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~ 306 (670)
...+.++..+.+.|..++|+++- ..||.. | ....+.|+++.|.++..+.. +..-|..|.++.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s-------~D~d~r-F----elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS-------TDPDQR-F----ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC-------CChhhh-h----hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 34566677777777777776543 222222 2 22346788888877765532 356678888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGL 386 (670)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 386 (670)
.+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.| +-| ..| -++...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N-~AF----~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNN-LAF----LAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccc-hHH----HHHHHcCCHHHHH
Confidence 888888888888876552 4566667777777666666656666655 223 233 2455678888887
Q ss_pred HHHH
Q 005905 387 MLLS 390 (670)
Q Consensus 387 ~~~~ 390 (670)
+++-
T Consensus 742 ~lLi 745 (794)
T KOG0276|consen 742 ELLI 745 (794)
T ss_pred HHHH
Confidence 7764
No 341
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=53.37 E-value=1.3e+02 Score=24.87 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=53.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 005905 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (670)
Q Consensus 38 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~ 117 (670)
..+.++|..+.+.+...+. ....+.-.-+....++|++++|+..=.....||...|-+|-. .+.|-.+++...+.+
T Consensus 19 ~HcH~EA~tIa~wL~~~~~--~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE--MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT--THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 4578899999999988873 333333333445677899999966555567899999876643 567888888888877
Q ss_pred HHHcC
Q 005905 118 VQEAG 122 (670)
Q Consensus 118 m~~~g 122 (670)
+-.+|
T Consensus 95 la~~g 99 (116)
T PF09477_consen 95 LASSG 99 (116)
T ss_dssp HCT-S
T ss_pred HHhCC
Confidence 77665
No 342
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=53.03 E-value=30 Score=23.27 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=7.3
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 005905 200 ACANAGQVDRAREVYKMIH 218 (670)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~ 218 (670)
+|...|+.+.|.++++++.
T Consensus 8 ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHcCChHHHHHHHHHHH
Confidence 3333333333333333333
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=52.50 E-value=1.7e+02 Score=25.91 Aligned_cols=19 Identities=11% Similarity=0.342 Sum_probs=10.1
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 005905 237 SQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~ 255 (670)
...|+|++|..+|+++.+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3455555555555555544
No 344
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.23 E-value=2.2e+02 Score=27.29 Aligned_cols=30 Identities=17% Similarity=0.386 Sum_probs=17.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005905 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTM 334 (670)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 334 (670)
.-+..+++.+|.++|+++....+..+.--|
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 334556777777777777665444444334
No 345
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.14 E-value=4.5e+02 Score=30.78 Aligned_cols=58 Identities=19% Similarity=0.181 Sum_probs=36.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchH----HHHHHH-HHHHhhhhhHHHHHHHhhhC
Q 005905 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDK----VYHARF-FNVCKSQKAIKEAFRFFKLV 87 (670)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~----~~~~~l-~~~~~~~~~~~~A~~~~~~~ 87 (670)
.-.-...+++..++++|+.+-+-....+ |... ..+... +-....++++++|++.|..+
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~--p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~ 372 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPN--PKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKS 372 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCC--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 5556667778888999998887776544 3221 112111 11234578899999999875
No 346
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=52.04 E-value=2.5e+02 Score=27.76 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHH----HHHCCCCccHHHHH
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEV-------FLSALIDFAGHAGKVEAAFEILQE----AKNQGISVGIISYS 300 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~li~~~~~~g~~~~A~~i~~~----m~~~~~~~~~~~~~ 300 (670)
+.+-..+.+++++|...+.++...|+..|.. +...+...|...|+...--+.... |....-+-.+.+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHH-----HHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 301 SLMGACSNAKN-WQKALELYEHMKSIKLKPTVSTM-----NALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 301 ~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+|+..+....+ ++.-..+.....+...+-..... .-+|..+.+.|.+.+|+.+...+..
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
No 347
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=51.83 E-value=2e+02 Score=30.46 Aligned_cols=39 Identities=21% Similarity=0.301 Sum_probs=25.5
Q ss_pred HhCCCCCCCCcc-ceEEech--HhHHhhhcCcCCCCCCCCCCC
Q 005905 606 RLGLPYQGNGSY-GKIRING--LALKRWFQPKLASPFSGKPGE 645 (670)
Q Consensus 606 ~l~~p~~~~~~~-g~~~~~~--~~~~~wl~~~~~~~~~~~~~~ 645 (670)
-|.+||-.+..| |+++.-. .-..|||.. ..-|||+.-.+
T Consensus 401 vLDIPFaps~~n~gkv~p~RD~~G~iR~~d~-GnlP~~~~ik~ 442 (480)
T TIGR01503 401 VLDIPFAPSKYNAGKMMPVRDNLGCVRYLEF-GNVPFTEEIKN 442 (480)
T ss_pred CCcCCCCCChhhccCceeeecCCCceEEeec-CCCCCChHHHH
Confidence 688999999888 8888733 335678873 23355444333
No 348
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=51.81 E-value=1.5e+02 Score=29.12 Aligned_cols=87 Identities=13% Similarity=0.059 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN---- 308 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~---- 308 (670)
|.+++..++|.+++...-+--+.--+.........|-.|.+.+....+.++-..-....-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5556666666665544333221111111223333333456666665555555544433222223335555444433
Q ss_pred -cCCHHHHHHHH
Q 005905 309 -AKNWQKALELY 319 (670)
Q Consensus 309 -~g~~~~A~~~~ 319 (670)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666554
No 349
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.50 E-value=2.1e+02 Score=26.67 Aligned_cols=91 Identities=14% Similarity=0.025 Sum_probs=48.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005905 199 KACANAGQVDRAREVYKMIHKYNIKGTP--EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276 (670)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 276 (670)
..+..++++++|..-++.........+. .+--.|.....+.|.+++|+.+++.....+.. ......--+++...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCc
Confidence 4566677777777777665532211111 11223445566667777777777665544321 1122223345666666
Q ss_pred hHHHHHHHHHHHHCC
Q 005905 277 VEAAFEILQEAKNQG 291 (670)
Q Consensus 277 ~~~A~~i~~~m~~~~ 291 (670)
-++|+.-|......+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 677777666666654
No 350
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=50.98 E-value=22 Score=20.58 Aligned_cols=15 Identities=20% Similarity=0.071 Sum_probs=6.1
Q ss_pred HHHHhcCCHHHHHHH
Q 005905 234 NCCSQTGDWEFACSV 248 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l 248 (670)
.++...|++++|..+
T Consensus 9 ~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 9 RALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHcCCHHHHHHH
Confidence 333444444444433
No 351
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.98 E-value=43 Score=22.56 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=7.3
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 005905 270 FAGHAGKVEAAFEILQEAK 288 (670)
Q Consensus 270 ~~~~~g~~~~A~~i~~~m~ 288 (670)
+|...|+.+.|.++++++.
T Consensus 8 ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 8 AYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHcCChHHHHHHHHHHH
Confidence 3333333333333333333
No 352
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=49.78 E-value=4.2e+02 Score=29.80 Aligned_cols=195 Identities=16% Similarity=0.146 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCH--HHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHH--
Q 005905 189 PDHITIGALMKACANAGQVDRAREVYKMIH-KYNIKGTP--EVYTIAINCCS-QTGDWEFACSVYDDMTKKGVIPDEV-- 262 (670)
Q Consensus 189 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~--~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~-- 262 (670)
.+...|..+|.. |++.++.+. +..++|.. .++-.+...+. ...+++.|...+.+.....-.++..
T Consensus 28 ~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 28 EQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 345566666654 344455554 33333322 34555566655 6788999999998765433222221
Q ss_pred ---HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCccHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCH
Q 005905 263 ---FLSALIDFAGHAGKVEAAFEILQEAKNQ----GISVGIISYSSL-MGACSNAKNWQKALELYEHMKSIK---LKPTV 331 (670)
Q Consensus 263 ---t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~p~~ 331 (670)
.-..++..+.+.+... |...++...+. +..+-...+.-+ +..+...+++..|.+.++.+.... ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2234566666666655 88888876553 222333344444 333334489999999998876532 23445
Q ss_pred HHHHHHHHHHH--hCCChhHHHHHHHHHHhCC--C-------CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHH
Q 005905 332 STMNALITALC--DGDQLPKTMEVLSDMKSLG--L-------CPNTITYSILLVAC--ERKDDVEVGLMLLSQAK 393 (670)
Q Consensus 332 ~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g--~-------~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~ 393 (670)
..+-.++.+.. +.+..+++++.++++.... + .|-..+|..+++.| ...|+++.+...++++.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555544 4566788888888874321 1 34566777777754 46788777777665553
No 353
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.45 E-value=59 Score=22.31 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=17.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005905 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCII 408 (670)
Q Consensus 377 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 408 (670)
.+.|.++++..++++|.+.|+..+...|..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555555555555555555555555555444
No 354
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=49.32 E-value=60 Score=22.28 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=24.5
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005905 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374 (670)
Q Consensus 341 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 374 (670)
..+.|..+++..++++|.+.|+.-+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456777777778888877887777777766654
No 355
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=48.87 E-value=3.1e+02 Score=27.92 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 207 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
.+.-+.++++..+.+ +.+...+..+|..+.+..+.+...+.++++...... +...|...|+....
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHH
Confidence 445566777777664 566777778888888888888888888888776443 56667666665533
No 356
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.64 E-value=1.1e+02 Score=24.19 Aligned_cols=14 Identities=29% Similarity=0.363 Sum_probs=5.8
Q ss_pred CChHHHHHHHHHHH
Q 005905 275 GKVEAAFEILQEAK 288 (670)
Q Consensus 275 g~~~~A~~i~~~m~ 288 (670)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444443
No 357
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=48.31 E-value=1.7e+02 Score=28.85 Aligned_cols=89 Identities=6% Similarity=-0.072 Sum_probs=58.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 005905 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD-- 343 (670)
Q Consensus 266 ~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-- 343 (670)
.=|++++..+++.+++.-.-+--+..-+....+.-.-|-.|.|.+....+.++-..-....-+-+...|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 347788888888887654433333222233445555566688999988888887776654334455567777666654
Q ss_pred ---CCChhHHHHHH
Q 005905 344 ---GDQLPKTMEVL 354 (670)
Q Consensus 344 ---~g~~~~A~~l~ 354 (670)
.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 58888888877
No 358
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.50 E-value=1.6e+02 Score=24.32 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 005905 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVL 354 (670)
Q Consensus 275 g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~ 354 (670)
...++|..|.+.+...+. ....+--.-+..+.+.|+|++|... ......||...|-+|-. .+.|..+++...|
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~----~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLL----PQCHCYPDLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHH----HTTS--GGGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHh----cccCCCccHHHHHHHHH--HhhccHHHHHHHH
Confidence 345666666666666553 2233333344456666777766211 12223566666654432 4566666666666
Q ss_pred HHHHhCCCCCCHHHH
Q 005905 355 SDMKSLGLCPNTITY 369 (670)
Q Consensus 355 ~~m~~~g~~p~~~t~ 369 (670)
.++..+| .|....|
T Consensus 93 ~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 93 TRLASSG-SPELQAF 106 (116)
T ss_dssp HHHCT-S-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 6665544 3433333
No 359
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=45.87 E-value=3e+02 Score=26.93 Aligned_cols=203 Identities=9% Similarity=0.104 Sum_probs=120.8
Q ss_pred CCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCC-
Q 005905 186 PVDPDHITIGALMKAC-ANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTK---KGV- 257 (670)
Q Consensus 186 ~~~pd~~t~~~li~~~-~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~- 257 (670)
+-.||+..=+..-.+- .+....++|+.-|.++.+..-... -.+...+|..+.+.|++++.++.|.+|+. ..+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3466654433322211 234578999999998877532222 23456789999999999999999998853 111
Q ss_pred -CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----C-CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----
Q 005905 258 -IPDEVFLSALIDFAGHAGKVEAAFEILQEAKN----Q-GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL---- 327 (670)
Q Consensus 258 -~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~----~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---- 327 (670)
.-+....+++++......+.+...++++.-.+ . +-..--.|-+.|...|...+.+.+-.+++.++...--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 12456778888776666665544444433221 1 1111122334566777788888888888888764310
Q ss_pred -------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH-----hcCCHHHHHHHH
Q 005905 328 -------KPTVSTMNALITALCDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLVACE-----RKDDVEVGLMLL 389 (670)
Q Consensus 328 -------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~ 389 (670)
..-...|..=|+.|....+-.....++++... ..--|.+... .+++-|+ +.|.+++|-.-|
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDF 254 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDF 254 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHH
Confidence 11234566677888888777777777776554 2223444433 4555554 557777765443
No 360
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.65 E-value=2.8e+02 Score=26.62 Aligned_cols=93 Identities=17% Similarity=0.146 Sum_probs=49.0
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHH---HHHH-HHhc--CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh
Q 005905 341 LCDGDQLPKTMEVLSDMKSLGLCPNTITYSI---LLVA-CERK--DDVEVGLMLLSQAKEDG-VIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 341 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---ll~a-~~~~--g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~r 413 (670)
-+..+++.+|+.+|++.....+.-+..-|.. ++.+ +|+. .+.-.+...+++-.+.. --.|.+-|.-|-+++..
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~a 243 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDA 243 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHH
Confidence 3467889999999999887655444433331 2221 2222 45445555555555432 12345556555444432
Q ss_pred -hHHHHHHhHHHhhhhcCCCc
Q 005905 414 -RYEKARTLNEHVLSFNSGRP 433 (670)
Q Consensus 414 -~~~~a~~l~~a~~~~~~~~~ 433 (670)
.=.+...+.+.+..|++..+
T Consensus 244 ieE~d~e~fte~vkefDsisr 264 (288)
T KOG1586|consen 244 IEEQDIEKFTEVVKEFDSISR 264 (288)
T ss_pred HhhhhHHHHHHHHHhhhccch
Confidence 12233445555666666554
No 361
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.15 E-value=5.2e+02 Score=29.49 Aligned_cols=160 Identities=9% Similarity=0.066 Sum_probs=99.4
Q ss_pred HHHhhhhhHHHHHHHhhhCCC--C---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005905 69 NVCKSQKAIKEAFRFFKLVPN--P---TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKV 143 (670)
Q Consensus 69 ~~~~~~~~~~~A~~~~~~~~~--~---~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 143 (670)
....+.+.+++|+.+.+.... + -...+...|..+...|++++|-...-.|... +..-|.--+..+..+++.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccccc
Confidence 344567889999998876542 2 2346778888899999999999998888753 667787788888888888
Q ss_pred HHHHhcC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005905 144 DAMFENV-----KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIH 218 (670)
Q Consensus 144 ~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~ 218 (670)
..++.-+ ..+...|..++..|.. .+ ..-|.+..++ .+++.+.-..++++-- .+..
T Consensus 440 ~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~~---Wp~~Lys~l~iisa~~------------~q~~ 499 (846)
T KOG2066|consen 440 TDIAPYLPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIKE---WPGHLYSVLTIISATE------------PQIK 499 (846)
T ss_pred chhhccCCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHHh---CChhhhhhhHHHhhcc------------hHHH
Confidence 7776632 2356677777777766 22 2234444443 2444333323332211 1111
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 219 KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 219 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
+.. . +...-..|+..|...+++..|+.++-...+
T Consensus 500 q~S-e-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 500 QNS-E-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred hhc-c-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 111 1 112333477888888888888888766553
No 362
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=44.33 E-value=2.6e+02 Score=25.70 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=5.2
Q ss_pred CCHHHHHHHHHH
Q 005905 399 PNLVMFKCIIGM 410 (670)
Q Consensus 399 p~~~~~~~li~~ 410 (670)
|+..+|+.-+.+
T Consensus 111 P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 111 PNNELYRKSLEM 122 (186)
T ss_dssp TT-HHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 444444444444
No 363
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=44.22 E-value=1.4e+02 Score=25.44 Aligned_cols=61 Identities=16% Similarity=0.273 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410 (670)
Q Consensus 349 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 410 (670)
|..+-++.+....+.|+......-++||.+.+++..|.++|+-.+.. +.+....|-.+++-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 44555666667778999999999999999999999999999877643 33555567777764
No 364
>PHA02875 ankyrin repeat protein; Provisional
Probab=42.74 E-value=1.9e+02 Score=30.49 Aligned_cols=181 Identities=13% Similarity=0.093 Sum_probs=77.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHH
Q 005905 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPE--VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVF---LSALIDF 270 (670)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~li~~ 270 (670)
+.+..++..|+.+-+ +.+.+.|..++.. ...+.+...+..|+.+.+..+++ .|...+... -.+.+..
T Consensus 37 tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~ 108 (413)
T PHA02875 37 SPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHL 108 (413)
T ss_pred CHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHH
Confidence 344555566666533 3334444433321 11223444456677665544443 222111100 0122333
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCccHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCC
Q 005905 271 AGHAGKVEAAFEILQEAKNQGISVGIIS--YSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALITALCDGD 345 (670)
Q Consensus 271 ~~~~g~~~~A~~i~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g 345 (670)
.+..|+. ++++.+.+.|..++... -.+.+...+..|+.+-+..+++ .|..++ ..-++.|.. .+..|
T Consensus 109 A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~TpL~~-A~~~g 179 (413)
T PHA02875 109 ATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID----HKACLDIEDCCGCTPLII-AMAKG 179 (413)
T ss_pred HHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCHHHH-HHHcC
Confidence 3445554 34444555565443221 1233444556677655544443 232222 222233332 23344
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 005905 346 QLPKTMEVLSDMKSLGLCPNTITY---SILLVACERKDDVEVGLMLLSQAKEDGVIPNL 401 (670)
Q Consensus 346 ~~~~A~~l~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~ 401 (670)
+. ++.+.+.+.|..|+...- .+.+......|+.+ +.+.+.+.|..++.
T Consensus 180 ~~----eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 180 DI----AICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred CH----HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 43 344445556666654321 23333333455543 33444556665554
No 365
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.68 E-value=1.2e+02 Score=24.02 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=38.0
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHH
Q 005905 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (670)
Q Consensus 44 A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A 111 (670)
+-++++.+.++|+.... ....+...-.+.|+.+.|.++...++ .....|...+.++...|.-+-|
T Consensus 21 ~~~v~d~ll~~~ilT~~--d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLLTEE--DRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCCCHH--HHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 45667777777765322 12222222234566777777777776 5555677777777766655444
No 366
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=39.21 E-value=2.2e+02 Score=23.43 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHH
Q 005905 335 NALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK--DDVEVGLMLLSQAKEDGVIPNLV 402 (670)
Q Consensus 335 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~m~~~g~~p~~~ 402 (670)
..++..|...|+.++|...+.++.... .-..+.+ .++..+... ..-+....++..+.+.+..+...
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~-~~~~vv~-~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~ 73 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS-QHHEVVK-VILECALEEKKSYREYYSKLLSHLCKRKLISKEQ 73 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG-GHHHHHH-HHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc-cHHHHHH-HHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 445666777777777777777653211 1112222 233333332 22334555666666666544433
No 367
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.14 E-value=62 Score=23.63 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=11.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH
Q 005905 336 ALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 336 ~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
.+|.+|...|++++|.+..+++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34555555555555555554443
No 368
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.09 E-value=35 Score=29.35 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=18.0
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005905 344 GDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375 (670)
Q Consensus 344 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 375 (670)
.|.-.+|..+|.+|.+.|-+||. |+.|+.+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34455666777777777766664 4445444
No 369
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=38.32 E-value=1.2e+02 Score=26.02 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHH
Q 005905 93 STFNMLMSVCASSKDSEGAFQVLR 116 (670)
Q Consensus 93 ~~y~~li~~~~~~g~~~~A~~~~~ 116 (670)
..|......+-..|++.+|.++|+
T Consensus 100 lfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 100 LFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345555556666777777777664
No 370
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=38.10 E-value=1.5e+02 Score=27.52 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 362 LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 362 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
..|+..+|..++.++...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777777777777777777777776666655
No 371
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.82 E-value=1.7e+02 Score=24.18 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488888888888999999998888876
No 372
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.64 E-value=2.9e+02 Score=26.39 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=54.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHH--HHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH
Q 005905 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMN--ALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367 (670)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 367 (670)
.+...-+|.|+--|.-...+.+|-..|.. +.++.| |..+++ .-|......|+.++|++..+++...-+.-|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 44445556666555555556666666654 233333 444443 34666778888888888887765433344442
Q ss_pred HHHHHH--HH--HHhcCCHHHHHHHHHH
Q 005905 368 TYSILL--VA--CERKDDVEVGLMLLSQ 391 (670)
Q Consensus 368 t~~~ll--~a--~~~~g~~~~a~~~~~~ 391 (670)
.|-.+. .. ..+.|..++|+++.+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 332222 22 3567777777777753
No 373
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=37.57 E-value=5.9e+02 Score=28.00 Aligned_cols=93 Identities=10% Similarity=0.115 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHhcCCH----HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHH
Q 005905 26 SEQLHSYNRLIRQGRI----SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNML 98 (670)
Q Consensus 26 ~~~~~~~~~l~~~g~~----~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~l 98 (670)
..+...|..++..+.- +.+...++.++..- |.-..+-..+...=.+.|..+.+..+|++.. +.++..|...
T Consensus 42 ~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y 119 (577)
T KOG1258|consen 42 SLDFDAWTTLIQENDSIEDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSY 119 (577)
T ss_pred hhcccchHHHHhccCchhHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3444556666643332 33444444454433 4444444444444456677777788887653 3344555555
Q ss_pred HHHH-HcCCCHHHHHHHHHHHHH
Q 005905 99 MSVC-ASSKDSEGAFQVLRLVQE 120 (670)
Q Consensus 99 i~~~-~~~g~~~~A~~~~~~m~~ 120 (670)
+..+ ...|+.+.....|+..+.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~ 142 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKS 142 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHH
Confidence 4333 335666666666666554
No 374
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.39 E-value=2.7e+02 Score=26.63 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=56.6
Q ss_pred HHhhhhhHHHHHHHhhhCCCCCHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh
Q 005905 70 VCKSQKAIKEAFRFFKLVPNPTLSTF-NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE 148 (670)
Q Consensus 70 ~~~~~~~~~~A~~~~~~~~~~~~~~y-~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~ 148 (670)
.+...+++++|++.+-.-.-+ ..| .-++.++...|+.+.|+.+++.+.-. ..+......++.. ..++.+.+||.
T Consensus 87 W~LD~~~~~~A~~~L~~ps~~--~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 87 WLLDHGDFEEALELLSHPSLI--PWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEAFS 161 (226)
T ss_pred HHhChHhHHHHHHHhCCCCCC--cccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHHHH
Confidence 344568889998887432111 122 24778888889999999888764322 1222333333444 66788888876
Q ss_pred --cCCCCH---HHHHHHHHHHHhcC
Q 005905 149 --NVKPDR---VVFNALITACGQSG 168 (670)
Q Consensus 149 --~~~~~~---~~~~~li~~~~~~g 168 (670)
...++. ..|..++..+....
T Consensus 162 ~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 162 FQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHhCchhhhHHHHHHHHHHHHHHh
Confidence 223333 37777777776544
No 375
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=36.80 E-value=2.4e+02 Score=24.12 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=22.7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005905 245 ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAK 288 (670)
Q Consensus 245 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~ 288 (670)
..+-+..+...++.|+......-+.+|.+.+++..|..+|+-++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555443
No 376
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=36.75 E-value=1.5e+02 Score=24.53 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 333 TMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
-|..|+.-|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888888888888888888776
No 377
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=36.64 E-value=72 Score=17.89 Aligned_cols=27 Identities=19% Similarity=0.139 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNA 182 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 182 (670)
.|..+...|...|+++.|...|....+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345556666666667777666666553
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=36.50 E-value=81 Score=24.37 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=22.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 005905 166 QSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREV 213 (670)
Q Consensus 166 ~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~ 213 (670)
+..+.++|+..+....+.. .-.|+ -.++..++.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~-~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKI-TDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666665555431 11122 12344455555555555554443
No 379
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.50 E-value=5.7e+02 Score=27.49 Aligned_cols=106 Identities=15% Similarity=0.014 Sum_probs=64.2
Q ss_pred HHhcCCHHHHHHHHHHHHh---CCCCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHHH-------hCCCCCC-----
Q 005905 306 CSNAKNWQKALELYEHMKS---IKLKPT-----VSTMNALITALCDGDQLPKTMEVLSDMK-------SLGLCPN----- 365 (670)
Q Consensus 306 ~~~~g~~~~A~~~~~~m~~---~~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~-------~~g~~p~----- 365 (670)
+.-.|++.+|.+++...-- .|...+ -..||.|-..+.+.|.+.-+..+|.+.. ..|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 4456888888887764321 121111 2235666666667777776666666554 2566653
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 366 ------TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 366 ------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
.++|+.=+ .+.+.|+.-.|.+.|.+..+. +.-++..|--|..+|.-
T Consensus 330 s~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 23444322 467889999999999877653 23556667767666653
No 380
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.42 E-value=60 Score=32.23 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 005905 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371 (670)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 371 (670)
||..|..-.+.|++++|+.++++..+.|+.--..||..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 45666666777777777777777776666555555543
No 381
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=36.29 E-value=4.8e+02 Score=26.52 Aligned_cols=118 Identities=11% Similarity=0.039 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---CCChhHHHHHH
Q 005905 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD---GDQLPKTMEVL 354 (670)
Q Consensus 278 ~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~l~ 354 (670)
+.-+.+++++.+.+ +.+......+|..+.+..+.+...+.++++..... -+...|...|..... .-.+++...+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666665553 34555666666666666666666666776665431 255566555554333 22344444444
Q ss_pred HHHHh------CCC------CC--CHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHCCC
Q 005905 355 SDMKS------LGL------CP--NTITYSILL---VACERKDDVEVGLMLLSQAKEDGV 397 (670)
Q Consensus 355 ~~m~~------~g~------~p--~~~t~~~ll---~a~~~~g~~~~a~~~~~~m~~~g~ 397 (670)
.+... .|. .| +......++ .-+..+|..+.|..+++-+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 44322 111 11 111222223 334578999999999998888654
No 382
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=35.92 E-value=1.1e+02 Score=23.62 Aligned_cols=17 Identities=29% Similarity=0.192 Sum_probs=7.1
Q ss_pred HHHHHHHHHhcCChHHH
Q 005905 264 LSALIDFAGHAGKVEAA 280 (670)
Q Consensus 264 ~~~li~~~~~~g~~~~A 280 (670)
+..++.+|+..|+++++
T Consensus 46 lG~l~qA~~e~Gkyr~~ 62 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREM 62 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 383
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.53 E-value=2.9e+02 Score=30.71 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=48.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 266 ALIDFAGHAGKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQ------KALELYEHMKSIKLKPTVSTMNAL 337 (670)
Q Consensus 266 ~li~~~~~~g~~~~A~~i~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~~p~~~~~~~l 337 (670)
+|+.+|...|++..+.++++.....+ -+.-...||..|.-..+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 77888888888888888888776543 2333556777777777777653 3344444333 35567777777
Q ss_pred HHHHHh
Q 005905 338 ITALCD 343 (670)
Q Consensus 338 i~~~~~ 343 (670)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 384
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.53 E-value=1.9e+02 Score=25.39 Aligned_cols=60 Identities=12% Similarity=0.149 Sum_probs=33.4
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005905 215 KMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275 (670)
Q Consensus 215 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 275 (670)
..+.+.|.+.+. --..++..+.+.++.-.|.++|+++.+.+...+..|.-..++.+...|
T Consensus 10 ~~lk~~glr~T~-qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTP-QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCH-HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344555555442 244555666666666667777777776665555555444444444444
No 385
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.15 E-value=74 Score=31.62 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=35.2
Q ss_pred CCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 90 PTLST-FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTT 132 (670)
Q Consensus 90 ~~~~~-y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ 132 (670)
||..+ ||..|....+.||+++|++++++..+.|+.--..+|-.
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 45544 78999999999999999999999999998655555543
No 386
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.84 E-value=40 Score=29.00 Aligned_cols=20 Identities=15% Similarity=0.178 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHHcCCCC
Q 005905 205 GQVDRAREVYKMIHKYNIKG 224 (670)
Q Consensus 205 g~~~~A~~~~~~m~~~~~~~ 224 (670)
|.-.+|..+|..|++.|-+|
T Consensus 109 gsk~DaY~VF~kML~~G~pP 128 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPP 128 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCC
Confidence 33444444555555444443
No 387
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.34 E-value=91 Score=22.75 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=9.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 005905 232 AINCCSQTGDWEFACSVYDDM 252 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m 252 (670)
+|.+|.+.|++++|.++.+++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444444
No 388
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=32.60 E-value=5.4e+02 Score=26.06 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
...++..+...+.+.|.++.|...+..+...+... +....-.-...+...|+-.+|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567777778888888888888887776533111 233334445566667777888887777665
No 389
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.36 E-value=5.8e+02 Score=26.31 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=32.4
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCC
Q 005905 342 CDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA----CERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 342 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a----~~~~g~~~~a~~~~~~m~~~g 396 (670)
.+-++..-|...+..|....+.-=..||.++=-. ....+..+++.+..-+|.+.|
T Consensus 288 ~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 288 TKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 3455566666666666655555555666655222 235566677777776777654
No 390
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=31.95 E-value=6e+02 Score=26.36 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=42.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hCCChhHHHHHHHHHHh
Q 005905 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC-DGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~ 359 (670)
|..+.+.|.+..|.++.+-+...++.-|+...-.+|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 5667788888888888888887776557777777777776 56677777777776544
No 391
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.53 E-value=5.3e+02 Score=25.63 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHh----CCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCC----CCH
Q 005905 331 VSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTITYSILLV-ACERKDDVEVGLMLLSQAKEDGVI----PNL 401 (670)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~g~~----p~~ 401 (670)
...|-.+..-|++.++.+.+.+...+..+ .|.+.|...-.+-+. .|....-+++-++..+.|.+.|-. ...
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 44555666667777777777666555432 455555433222221 233334456666666667666533 234
Q ss_pred HHHHHHHHHHHhhHHHHHHhH-HHhhhhcC
Q 005905 402 VMFKCIIGMCSRRYEKARTLN-EHVLSFNS 430 (670)
Q Consensus 402 ~~~~~li~~~~r~~~~a~~l~-~a~~~~~~ 430 (670)
.+|..+..+..|.+.+|+.+. +.+..|++
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 556666666666777776654 33334443
No 392
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.36 E-value=2.5e+02 Score=22.35 Aligned_cols=53 Identities=15% Similarity=0.128 Sum_probs=30.3
Q ss_pred HhCCChhHHHHHHHHHHh----CCCCCC--HHHH--HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 342 CDGDQLPKTMEVLSDMKS----LGLCPN--TITY--SILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 342 ~~~g~~~~A~~l~~~m~~----~g~~p~--~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
.+.|++.+|.+.+.+..+ .+..+. ...+ ..+.......|..++|.+.+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777777655555433 222221 1222 2233345677899999988888775
No 393
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=30.67 E-value=5.6e+02 Score=25.66 Aligned_cols=87 Identities=15% Similarity=0.016 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHCCC----CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 005905 277 VEAAFEILQEAKNQGI----SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352 (670)
Q Consensus 277 ~~~A~~i~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (670)
.+.|.+.|+.....+. ..+......++....+.|+.+.-..+++.... .++...-..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 4566666776665421 33455555666666677776665555555553 3456666777777777777777777
Q ss_pred HHHHHHhCC-CCCCH
Q 005905 353 VLSDMKSLG-LCPNT 366 (670)
Q Consensus 353 l~~~m~~~g-~~p~~ 366 (670)
+++.....+ +++..
T Consensus 223 ~l~~~l~~~~v~~~d 237 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD 237 (324)
T ss_dssp HHHHHHCTSTS-TTT
T ss_pred HHHHHcCCcccccHH
Confidence 777766643 44433
No 394
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.44 E-value=3.4e+02 Score=24.98 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=12.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 005905 303 MGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~ 324 (670)
+-.|.+.|.+++|.++++..-+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3445566666666666665543
No 395
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=30.28 E-value=5.9e+02 Score=25.78 Aligned_cols=27 Identities=11% Similarity=0.280 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
+|..+...+.+.|.++.|...+..+..
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~ 174 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQ 174 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhc
Confidence 344444444444444444444444443
No 396
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=30.24 E-value=8.2e+02 Score=29.25 Aligned_cols=29 Identities=14% Similarity=0.382 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcC--ChHHHHHHHHHHHHC
Q 005905 262 VFLSALIDFAGHAG--KVEAAFEILQEAKNQ 290 (670)
Q Consensus 262 ~t~~~li~~~~~~g--~~~~A~~i~~~m~~~ 290 (670)
.-+..+|.+|++.+ +++.|+....++.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 44556777777777 777777777777665
No 397
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=30.12 E-value=7.8e+02 Score=27.14 Aligned_cols=186 Identities=15% Similarity=0.054 Sum_probs=101.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHH
Q 005905 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVFLSA 266 (670)
Q Consensus 189 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~ 266 (670)
++..+|..-+.--.+.|+.+.+.-+|+...-- +..-...|--.+.-....|+.+-|..++..-.+--++ |....+.+
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 34456666666666666666666666554321 1111234444444444447766666666555443332 22222222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHHHHHHHHH---
Q 005905 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL---ELYEHMKSIKLKPTVSTMNALITA--- 340 (670)
Q Consensus 267 li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~li~~--- 340 (670)
.+ +-..|+.+.|..+++.+...- +.-+.+-..-+.+..+.|+.+.+. .++....... -+....+.+..-
T Consensus 374 ~f--~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 374 RF--EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFAR 448 (577)
T ss_pred HH--HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHH
Confidence 22 344567777777777776553 222333333455566777777776 4444433322 222233333322
Q ss_pred --HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005905 341 --LCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD 381 (670)
Q Consensus 341 --~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 381 (670)
+.-.++.+.|..++.+|.+. ++++...|..++.-+...+.
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 23367788888888888875 56777778788877665553
No 398
>PRK14700 recombination factor protein RarA; Provisional
Probab=30.11 E-value=5.3e+02 Score=25.87 Aligned_cols=44 Identities=18% Similarity=0.071 Sum_probs=29.8
Q ss_pred HHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005905 232 AINCCSQ---TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275 (670)
Q Consensus 232 li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 275 (670)
+|+++.+ -.|++.|+-.+..|++.|-.|....=..++-++-.-|
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4556544 4678888888888888887766665555555554444
No 399
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=29.53 E-value=3.8e+02 Score=29.92 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=10.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 005905 159 ALITACGQSGAVDRAFDVLAEMN 181 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~ 181 (670)
+|..+|..+|++.++.++++...
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~ 55 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFI 55 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh
Confidence 34444444444444444444443
No 400
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=29.12 E-value=1.9e+02 Score=20.39 Aligned_cols=35 Identities=9% Similarity=0.019 Sum_probs=18.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 373 LVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409 (670)
Q Consensus 373 l~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 409 (670)
.-++.+.|++++|.++.+.+.+ ++|+-.-...|-.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 3455666666666666666655 3455544444443
No 401
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=29.00 E-value=1e+03 Score=28.09 Aligned_cols=33 Identities=12% Similarity=0.013 Sum_probs=14.1
Q ss_pred hcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 005905 378 RKDDVEVGLMLLSQAKE-DGVIPNLVMFKCIIGM 410 (670)
Q Consensus 378 ~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~ 410 (670)
..|++..+.+++.++.+ .|-.++..+|.-++..
T Consensus 1243 ~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el 1276 (1304)
T KOG1114|consen 1243 ALGQYGRALKALLKLIEENGESATKDVAVLLAEL 1276 (1304)
T ss_pred HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 34444444444444443 2333444444444333
No 402
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.99 E-value=3.6e+02 Score=31.54 Aligned_cols=116 Identities=17% Similarity=0.144 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCccHHHHHH-
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD---EVFLSALIDFAGHAGKV--EAAFEILQEAKNQGISVGIISYSS- 301 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~g~~--~~A~~i~~~m~~~~~~~~~~~~~~- 301 (670)
-|..|+..|...|+.++|++++.+..+..-.-| ..-+-.+++-..+.+.. +..+++-+...+........+++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 488999999999999999999999876321001 11222344444444433 444444443333221111111111
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005905 302 -----------LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCD 343 (670)
Q Consensus 302 -----------li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 343 (670)
.+-.|.+....+-+...++.+....-.++....+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 122344555666666677766654444566666666666653
No 403
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=28.49 E-value=5.5e+02 Score=24.80 Aligned_cols=126 Identities=13% Similarity=0.203 Sum_probs=61.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~ 311 (670)
-+..|++.-++..|...++++.+- ..+ .+.+--|.+..+..--.++.+-....+++-+.....+++ +...|+
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEP-----IQS-RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GD 207 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEP-----IQS-RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGD 207 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhh-----HHh-hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccch
Confidence 345555555555555555554321 111 222223444444444444444444444444444444433 345677
Q ss_pred HHHHHHHHHHHHh-CC-----------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 312 WQKALELYEHMKS-IK-----------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 312 ~~~A~~~~~~m~~-~~-----------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
..+|...++.-.. .| -.|.+.....|+..|. .+++++|.++|.++-+.|+.|..
T Consensus 208 MRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 208 MRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred HHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 7777666554321 00 1455555555555443 34566666666666666666644
No 404
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.21 E-value=2.7e+02 Score=26.99 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTK----KG-VIPDEVFLSALIDFAGHAGKVEAAFEILQE 286 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~li~~~~~~g~~~~A~~i~~~ 286 (670)
.|..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+--+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344555555555555555555531 11 122333444555555555655555544433
No 405
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=28.07 E-value=8.3e+02 Score=26.77 Aligned_cols=125 Identities=10% Similarity=0.060 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGA---LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
....++.-|.+.+++++|+.++..|.= ... ....|.. +.+.+.+..--++.+..++.+...=..|....-...
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW---~~~-g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~ 485 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNW---NTM-GEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDAT 485 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCc---ccc-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHH
Confidence 344678899999999999999999852 222 2233333 333444443333344444444432222221111222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~ 291 (670)
..-|.. -=.+-|.++|..|...+ .|..........|+.|.-++++..+...|
T Consensus 486 ~~ey~d-~V~~~aRRfFhhLLR~~------rfekAFlLAvdi~~~DLFmdlh~~A~~~g 537 (545)
T PF11768_consen 486 VLEYRD-PVSDLARRFFHHLLRYQ------RFEKAFLLAVDIGDRDLFMDLHYLAKDKG 537 (545)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhh------HHHHHHHHHHhccchHHHHHHHHHHHhcc
Confidence 222222 11234556666665542 12222222334455555555555554444
No 406
>PF10759 DUF2587: Protein of unknown function (DUF2587); InterPro: IPR019695 This entry represents proteins found Actinobacteria sp. The function is not known.
Probab=28.05 E-value=31 Score=29.79 Aligned_cols=40 Identities=23% Similarity=0.490 Sum_probs=34.1
Q ss_pred HhhhHHHHHHHHHhCCCCCCCCcc--ceEEechHhHHhhhcC
Q 005905 594 ERTTQAIAALLRRLGLPYQGNGSY--GKIRINGLALKRWFQP 633 (670)
Q Consensus 594 ~~~~~~~~~~l~~l~~p~~~~~~~--g~~~~~~~~~~~wl~~ 633 (670)
++|+..+..-|.||.+||.++.-. +.+++--.-|.-||+.
T Consensus 72 dgLaPeL~eEL~RlslPF~~~~~PSdaELRIAQAQLVGWLEG 113 (169)
T PF10759_consen 72 DGLAPELREELERLSLPFTEDSTPSDAELRIAQAQLVGWLEG 113 (169)
T ss_pred HhcCHHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 358888888999999999976433 9999999999999984
No 407
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=27.17 E-value=2e+02 Score=20.28 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=16.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372 (670)
Q Consensus 337 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 372 (670)
+..++.+.|++++|.+..+.+.+ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 34455566666666666666555 34554444333
No 408
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=27.16 E-value=2.4e+02 Score=26.01 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005905 188 DPDHITIGALMKACANAGQVDRAREVYKMIHK 219 (670)
Q Consensus 188 ~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 219 (670)
.|+...|..++.++...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555566666666666555555544
No 409
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=27.13 E-value=3.7e+02 Score=29.50 Aligned_cols=116 Identities=16% Similarity=0.081 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 243 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
+-+-.+|..|... ..|--..++..--...-.|+...|...+.........-.-+....|.....+.|...+|..++.+.
T Consensus 590 e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~ 668 (886)
T KOG4507|consen 590 EIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQA 668 (886)
T ss_pred HHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHH
Confidence 4455566666543 223222233222223345777777776665543321111122334555556667777888887776
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005905 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360 (670)
Q Consensus 323 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 360 (670)
.... ...+-++-.+..+|.-..+++.|++.|++..+.
T Consensus 669 l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 669 LAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred Hhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 6544 335556777788888888899999988887664
No 410
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=26.35 E-value=1.1e+03 Score=27.56 Aligned_cols=274 Identities=13% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH
Q 005905 113 QVLRLVQEAGLKAD-CKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH 191 (670)
Q Consensus 113 ~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~ 191 (670)
+.+..=.+.+..++ ....-.-...+...|..+++ |.-....|+++.|-.++++.-.+ -++.
T Consensus 332 eFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eA--------------I~hAlaA~d~~~aa~lle~~~~~----L~~~ 393 (894)
T COG2909 332 EFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEA--------------IDHALAAGDPEMAADLLEQLEWQ----LFNG 393 (894)
T ss_pred HHHHhhhccccCCchhHHHHHHHHHHHhCCChHHH--------------HHHHHhCCCHHHHHHHHHhhhhh----hhcc
Q ss_pred HHHHHHHHH----------------------HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--------HhcCC
Q 005905 192 ITIGALMKA----------------------CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC--------SQTGD 241 (670)
Q Consensus 192 ~t~~~li~~----------------------~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~--------~~~g~ 241 (670)
.-...+... .....++++|..+..++...-..|+...-..+...+ ...|+
T Consensus 394 ~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~ 473 (894)
T COG2909 394 SELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGD 473 (894)
T ss_pred cchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCC
Q ss_pred HHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHH-----HHhcC--
Q 005905 242 WEFACSVYDDMTKK----GVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-----CSNAK-- 310 (670)
Q Consensus 242 ~~~A~~l~~~m~~~----g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~-----~~~~g-- 310 (670)
++.|.++-+..... -..+....++.+..+..-.|++++|..+.++..+..-.-++..+...... +...|
T Consensus 474 ~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~ 553 (894)
T COG2909 474 PEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQV 553 (894)
T ss_pred HHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHH
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhC-CChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCC
Q 005905 311 NWQKALELYEHMKSIKLKPTVS------TMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYS--ILLVACERKDD 381 (670)
Q Consensus 311 ~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~g~ 381 (670)
.+.+.+..|.........--.. ++..+..++.+. +...+|..-+.--......|-...+. .+.......|+
T Consensus 554 ~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gd 633 (894)
T COG2909 554 ARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGD 633 (894)
T ss_pred HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCC
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH
Q 005905 382 VEVGLMLLSQAKEDGVIPNLVMF 404 (670)
Q Consensus 382 ~~~a~~~~~~m~~~g~~p~~~~~ 404 (670)
+++|...+.++......++...|
T Consensus 634 l~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 634 LDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred HHHHHHHHHHHHHHhcCCCCCch
No 411
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=26.13 E-value=5.3e+02 Score=23.83 Aligned_cols=43 Identities=12% Similarity=0.185 Sum_probs=28.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 005905 97 MLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGK 142 (670)
Q Consensus 97 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 142 (670)
..+..|.+.|.+++|.+++++... .|+......-+....+..+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHccc
Confidence 345678899999999999988876 3555555554444444443
No 412
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.04 E-value=3.2e+02 Score=21.44 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHH
Q 005905 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (670)
Q Consensus 44 A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A 111 (670)
.-.+++.+.+.|+..... .-..-......+.|.++.+.++.....+|.....++...|...-|
T Consensus 18 ~~~v~~~L~~~~Vlt~~~-----~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVFTPDM-----IEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCCCHHH-----HHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 345778888888754321 111223345577888888888888888888888888777765544
No 413
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=26.01 E-value=3.2e+02 Score=26.54 Aligned_cols=56 Identities=21% Similarity=0.111 Sum_probs=30.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 336 ALITALCDGDQLPKTMEVLSDMKS----LG-LCPNTITYSILLVACERKDDVEVGLMLLSQ 391 (670)
Q Consensus 336 ~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 391 (670)
.|..-|...|++++|+++|+.+.. .| ..+...+...++.++.+.|+.+..+.+.=+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344556666777777776666532 22 122334445555666666776666555433
No 414
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.55 E-value=9.4e+02 Score=26.55 Aligned_cols=155 Identities=15% Similarity=0.091 Sum_probs=89.2
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCCC------------HHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHcCCCC--
Q 005905 166 QSGAVDRAFDVLAEMNAEVHPVDPD------------HITIGALMKACANAGQVDRAREV-------YKMIHKYNIKG-- 224 (670)
Q Consensus 166 ~~g~~~~A~~l~~~m~~~~~~~~pd------------~~t~~~li~~~~~~g~~~~A~~~-------~~~m~~~~~~~-- 224 (670)
++..+++|...|.-.... ..|+ ..+...+..+|-..|+.+.|..+ |+......+.|
T Consensus 250 hs~sYeqaq~~F~~av~~---~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~s 326 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIV---HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFS 326 (665)
T ss_pred cchHHHHHHHHHHHHHhh---cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccc
Confidence 344567777777666543 2222 12344455677777876555544 44444333322
Q ss_pred -----------CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHH
Q 005905 225 -----------TPEVYTIA---INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG-HAGKVEAAFEILQEAKN 289 (670)
Q Consensus 225 -----------~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~A~~i~~~m~~ 289 (670)
|...|-++ |..+.+.|.+..|.++.+-+.+....-|......+|+.|+ ++.++.-.+++++....
T Consensus 327 g~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 327 GNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred ccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 22333333 4566788999999998888888776667788888888775 55677777777777654
Q ss_pred CC---CCccHHHHHHHHHHHHhcCC---HHHHHHHHHHHH
Q 005905 290 QG---ISVGIISYSSLMGACSNAKN---WQKALELYEHMK 323 (670)
Q Consensus 290 ~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 323 (670)
.+ .-|+..--.+|...|..... -+.|...+.+..
T Consensus 407 ~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl 446 (665)
T KOG2422|consen 407 MNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQAL 446 (665)
T ss_pred hccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Confidence 43 23443322334444444333 334444444443
No 415
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=25.40 E-value=2.4e+02 Score=30.92 Aligned_cols=152 Identities=20% Similarity=0.143 Sum_probs=95.1
Q ss_pred CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005905 188 DPDHITIGALMKACANA--GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265 (670)
Q Consensus 188 ~pd~~t~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 265 (670)
-|+..+..+++.-.... ..-+-+-.++..|..- +.|--.+.|..--.+.-.|+...|...+.........-..+...
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 45666655554433322 1234455555555442 23332333333223344688888888776665443322334555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342 (670)
Q Consensus 266 ~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 342 (670)
.|.+...+.|..-.|..++.+..... ...+.++-.+..+|.-..+++.|.+-|++..+.. ..+.+.-+.|...-|
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 66667777788888888888877665 5556777789999999999999999999887765 346777777765544
No 416
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.34 E-value=8.2e+02 Score=25.81 Aligned_cols=176 Identities=15% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHP-----VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-----~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 229 (670)
.+.-.|++.++-.|++..|+++++.+.-...+ ..-...+|--+.-+|...+++.+|.++|..+.- ...
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~-------yi~ 195 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL-------YIQ 195 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHHHHCCCCcc
Q 005905 230 TIAINCCSQTGDWEFACSVYDDMTKK--------GVIPDEVFLSALIDFAGHA------GKVEAAFEILQEAKNQGISVG 295 (670)
Q Consensus 230 ~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~~~t~~~li~~~~~~------g~~~~A~~i~~~m~~~~~~~~ 295 (670)
..--....+..+.+...+.-++|... ....|..+...+=+-|... |+.+.-.++|...--+=+.|.
T Consensus 196 r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~acPKFIsp~ 275 (404)
T PF10255_consen 196 RTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFACPKFISPV 275 (404)
T ss_pred HhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhCCCccCCC
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 296 -IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337 (670)
Q Consensus 296 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 337 (670)
+..+............-....-.++++.....-|+..+|--|
T Consensus 276 ~pp~~~~~~~~~~~e~~~~Ql~~Fl~eV~~q~~l~~lRSyLKL 318 (404)
T PF10255_consen 276 SPPDYDGPSQNKNKEPYRRQLKLFLDEVKQQQKLPTLRSYLKL 318 (404)
T ss_pred CCCCcccccchhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh
No 417
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.98 E-value=3.2e+02 Score=24.01 Aligned_cols=63 Identities=21% Similarity=0.141 Sum_probs=39.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005905 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382 (670)
Q Consensus 319 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 382 (670)
.+.+++.|.+++.. -..++..+.+.+..-.|.++++++.+.+..-+..|-...|..+...|-+
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 34445555554432 3345666666666677777777777766666666666666777777764
No 418
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=24.58 E-value=3.2e+02 Score=21.73 Aligned_cols=60 Identities=12% Similarity=0.231 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHH
Q 005905 45 IDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 45 ~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~ 109 (670)
-.+++.+.+.|+..... .. ..-...-..+.+.++++.++.....+|..+..++...+...
T Consensus 23 ~~v~~~L~~~gvlt~~~-~~----~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~~~ 82 (90)
T cd08332 23 DELLIHLLQKDILTDSM-AE----SIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQEH 82 (90)
T ss_pred HHHHHHHHHcCCCCHHH-HH----HHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcChHH
Confidence 34778888888764332 11 12223345678888888888888888888888886655433
No 419
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=24.06 E-value=9.5e+02 Score=26.12 Aligned_cols=180 Identities=10% Similarity=0.149 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
|....-+++..++++-...-...+..+|..- ..+...|..++..|... .-++-..+++.+.+..+ .|++.-..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~----~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY----GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh----cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4445556677777776666666677777653 34556677777777766 44556666776666543 222333334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCccHHHHHHHHHHH
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKGVIP-----DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ-GISVGIISYSSLMGAC 306 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~-~~~~~~~~~~~li~~~ 306 (670)
...|-+ ++.+.+...|.+...+=++- =...|.-++..- ..+.+..+.+...+... |...-.+.+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444433 66677777776665432210 012333333211 23445555555555432 3333345555566677
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 307 SNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342 (670)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 342 (670)
....++++|.+++..+.+.+ ..|...-..+|.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHHH
Confidence 77778888888888777665 346655555555443
No 420
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=23.47 E-value=1.3e+02 Score=22.23 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005905 263 FLSALIDFAGHAGKVEAAFEILQEAKNQG 291 (670)
Q Consensus 263 t~~~li~~~~~~g~~~~A~~i~~~m~~~~ 291 (670)
.++-++..++.-..+++++..+.++.+.|
T Consensus 10 l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 10 LSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344444444444444444444444443
No 421
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=23.35 E-value=3.2e+02 Score=28.82 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 196 ALMKACANAGQVDRAREVYKMIHKYNIK--GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
.|+.-|...|++.+|.+..+++ |.+ ....++.+++.+.-+.|+-...+.++++.-+.|. .|.+.|-.+|.+
T Consensus 514 ~LLeEY~~~GdisEA~~CikeL---gmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKEL---GMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHh---CCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 4555566666666666555444 222 1234555666666666665555555555555443 234444444443
No 422
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=23.31 E-value=3.8e+02 Score=21.24 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=11.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 005905 233 INCCSQTGDWEFACSVYDDMT 253 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~ 253 (670)
...+...|++++|...+++.+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 334445566666666665543
No 423
>PRK13342 recombination factor protein RarA; Reviewed
Probab=23.28 E-value=9e+02 Score=25.55 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhhC-CCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------------------HHcCCCCCHHH
Q 005905 169 AVDRAFDVLAEMNAE-VHPV-DPDHITIGALMKACANAGQVDRAREVYKMI------------------HKYNIKGTPEV 228 (670)
Q Consensus 169 ~~~~A~~l~~~m~~~-~~~~-~pd~~t~~~li~~~~~~g~~~~A~~~~~~m------------------~~~~~~~~~~~ 228 (670)
..++...++...... +.++ ..+......++..+ .|+...+..+++.+ ...........
T Consensus 152 s~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~ 229 (413)
T PRK13342 152 SEEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDE 229 (413)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccH
Q ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCccHHHHH
Q 005905 229 YTIAINCCSQT---GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-----KVEAAFEILQEAKNQGISVGIISYS 300 (670)
Q Consensus 229 ~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-----~~~~A~~i~~~m~~~~~~~~~~~~~ 300 (670)
...+++++.+. ++.+.|+..+..|.+.|..|....-..++.++-..| .+..|...++-...-|++-......
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~ 309 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALA 309 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 301 SLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
..+-.++.+-+-..+...+....+
T Consensus 310 ~~~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 310 QAVIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHHHcCCCccHHHHHHHHHHH
No 424
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=22.71 E-value=4.3e+02 Score=23.88 Aligned_cols=58 Identities=16% Similarity=0.068 Sum_probs=29.1
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005905 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276 (670)
Q Consensus 218 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 276 (670)
.+.|+..+.. -.+++..+....+.-.|.++++.+.+.+...+..|...-|..+...|-
T Consensus 18 ~~~GlR~T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 3445444332 223444444444455566666666666655555555445555555443
No 425
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=22.66 E-value=2e+02 Score=34.09 Aligned_cols=69 Identities=19% Similarity=0.241 Sum_probs=46.3
Q ss_pred cccCCCchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC
Q 005905 19 ANYAHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP 88 (670)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 88 (670)
..|..|.+ .+..|..+-....+.++.++|..|...|+-+....++......+.+.+.+.+|..+|+...
T Consensus 73 k~Y~nD~R-fl~~~~~~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Gi 141 (974)
T KOG1166|consen 73 KRYRNDPR-FLILWCSLELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGI 141 (974)
T ss_pred hhccccHH-HHHHHHhHHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 4444544445567778888888888887776677777777777777777777877776654
No 426
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=22.36 E-value=6.9e+02 Score=23.85 Aligned_cols=166 Identities=16% Similarity=0.043 Sum_probs=88.0
Q ss_pred CHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHH
Q 005905 142 KVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGAL--MKACANAGQVDRAREVYKMIHK 219 (670)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~l--i~~~~~~g~~~~A~~~~~~m~~ 219 (670)
++..++..-+.-..+||-|.--+...|+++.|.+.|+...+- .|. .-|..+ .-++.-.|++..|.+-|-..-+
T Consensus 87 DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----Dp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 87 DFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred hhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----CCc-chHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 344444433444677888888899999999999999998764 443 222222 2233456888888887766665
Q ss_pred cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHHCCC---
Q 005905 220 YNIKGT--PEVYTIAINCCSQTGDWEFACSVY-DDMTKKGVIPDEVFLSALIDFA-GHAGKVEAAFEILQEAKNQGI--- 292 (670)
Q Consensus 220 ~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~-~~m~~~g~~p~~~t~~~li~~~-~~~g~~~~A~~i~~~m~~~~~--- 292 (670)
.+ +.| ...|--++. +.-++.+|..-+ ++.... |..-|...|-.| ...=..+ .+++.+....-
T Consensus 162 ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~ 230 (297)
T COG4785 162 DD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE---TLMERLKADATDNT 230 (297)
T ss_pred cC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchH
Confidence 54 223 233433332 334556665433 333222 333443333222 2111111 12222222110
Q ss_pred ---CccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 293 ---SVGIISYSSLMGACSNAKNWQKALELYEHMK 323 (670)
Q Consensus 293 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (670)
..-..||--|..-|...|+.++|..+|+-..
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 0013456666677777777777777777655
No 427
>PHA02875 ankyrin repeat protein; Provisional
Probab=22.00 E-value=9.2e+02 Score=25.21 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=7.1
Q ss_pred HHHhcCCHHHHHHHH
Q 005905 163 ACGQSGAVDRAFDVL 177 (670)
Q Consensus 163 ~~~~~g~~~~A~~l~ 177 (670)
..+..|+.+.+..++
T Consensus 74 ~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 74 DAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHCCCHHHHHHHH
Confidence 334455555444444
No 428
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.99 E-value=1.1e+03 Score=25.93 Aligned_cols=36 Identities=8% Similarity=0.098 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 330 TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
+......|+.++.. |+.+.++.++++|...|..|..
T Consensus 245 ~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 245 EPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred CHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 33334445554443 6677777777777777766643
No 429
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.39 E-value=3.6e+02 Score=22.51 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=20.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005905 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229 (670)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 229 (670)
+++-+.+|...++|+++.+.|.++| ..+...-
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A 98 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEA 98 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHH
Confidence 5555667777777777777777776 4444333
No 430
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=21.26 E-value=8.3e+02 Score=24.40 Aligned_cols=84 Identities=12% Similarity=0.044 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhCCCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 170 VDRAFDVLAEMNAEVHP--VDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~--~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 247 (670)
.++|.+.|+.....+.+ ...+...-..++....+.|+.+.-..+++.... ..+......++.+.+-..+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 57788888888764222 123444555566666677776655555555443 2346677778888888888887778
Q ss_pred HHHHHHHCC
Q 005905 248 VYDDMTKKG 256 (670)
Q Consensus 248 l~~~m~~~g 256 (670)
+++.....+
T Consensus 223 ~l~~~l~~~ 231 (324)
T PF11838_consen 223 LLDLLLSND 231 (324)
T ss_dssp HHHHHHCTS
T ss_pred HHHHHcCCc
Confidence 887777754
No 431
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=21.17 E-value=1.1e+03 Score=25.65 Aligned_cols=229 Identities=10% Similarity=0.116 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 005905 152 PDRVVFNALITACGQS------GAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKG 224 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~------g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 224 (670)
|+...|+..|..|... ..+...+.+|+..... .+..++ ...|..+.-.++..... ..+-..+...++..
T Consensus 313 ~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~-~~l~~~~~~~ys~~~l~~~t~~~~---r~~a~~l~~e~f~~ 388 (568)
T KOG2396|consen 313 PTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHEL-KLLSECLYKQYSVLLLCLNTLNEA---REVAVKLTTELFRD 388 (568)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh-cccccchHHHHHHHHHHHhccchH---hHHHHHhhHHHhcc
Confidence 3444555555554432 2345555666665543 234444 33455555555554432 22222222233444
Q ss_pred CHHHHHHHHHHHHhc-CCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHH--HHHHHHHHHCCCCccHH-H
Q 005905 225 TPEVYTIAINCCSQT-GDWEF-ACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAA--FEILQEAKNQGISVGII-S 298 (670)
Q Consensus 225 ~~~~~~~li~~~~~~-g~~~~-A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~A--~~i~~~m~~~~~~~~~~-~ 298 (670)
+...|-.-+....+. .|++- -.++|......-..+-...|++.. .++ ++.. ..++......+ .++.. .
T Consensus 389 s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl 462 (568)
T KOG2396|consen 389 SGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTL 462 (568)
T ss_pred hHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeeh
Confidence 556666555554422 12221 222333333332233333444333 222 2211 12333333333 34443 4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhCCChhHHHHHHHHHHh-CCCCCCHHHHHHHHH
Q 005905 299 YSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL---CDGDQLPKTMEVLSDMKS-LGLCPNTITYSILLV 374 (670)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~ll~ 374 (670)
-+.+++-+-+.|-+.+|+.+|..+.... +|....|.-||..= ..+| ..-+.++++.|.. .| .|...|.-.+.
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~ 538 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMK 538 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHH
Confidence 4677888889999999999999987764 67888888887642 2333 6677778887765 45 55555655555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 005905 375 ACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 375 a~~~~g~~~~a~~~~~~m~~ 394 (670)
-=...|..+.+-.++.++.+
T Consensus 539 ~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 539 EELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hhccCCCcccccHHHHHHHH
Confidence 44566766666666655443
No 432
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=21.04 E-value=4.2e+02 Score=20.93 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 212 EVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 212 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
++|+-....|+..|+.+|..+++...-+=.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666666666666666655566666666666643
No 433
>PF11338 DUF3140: Protein of unknown function (DUF3140); InterPro: IPR021487 Some members in this family of proteins are annotated as DNA binding proteins. No function is currently known.
Probab=20.93 E-value=95 Score=24.76 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=16.9
Q ss_pred echHhHHhhhcCcCCCCCCCCC
Q 005905 622 INGLALKRWFQPKLASPFSGKP 643 (670)
Q Consensus 622 ~~~~~~~~wl~~~~~~~~~~~~ 643 (670)
-|...|+.||++..+.+.+.+.
T Consensus 8 Mt~~EL~~WL~t~~S~~~g~~~ 29 (92)
T PF11338_consen 8 MTPAELEDWLRTDESKSVGEKK 29 (92)
T ss_pred CCHHHHHHHHcCccccccccCC
Confidence 3788999999999887654444
No 434
>PF06485 DUF1092: Protein of unknown function (DUF1092); InterPro: IPR009472 This family consists of several hypothetical proteins of unknown function all from photosynthetic organisms including plants and cyanobacteria.
Probab=20.74 E-value=1.2e+02 Score=29.65 Aligned_cols=56 Identities=20% Similarity=0.411 Sum_probs=40.0
Q ss_pred HHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhCCCCCCCCccceEEechHhHHhhhcCc
Q 005905 555 KGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGNGSYGKIRINGLALKRWFQPK 634 (670)
Q Consensus 555 ~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~p~~~~~~~g~~~~~~~~~~~wl~~~ 634 (670)
..|.+.+..++..|+..=+ +-..-...|..-.++||++...|++ --+|++||+.|
T Consensus 48 ~al~~a~~~~~~~P~~Ir~------------------FR~qm~~mI~~A~~~lgI~~~pSRR-------t~aL~~wL~eR 102 (270)
T PF06485_consen 48 QALEEAIDQGGEKPDRIRF------------------FRSQMLNMITKACEELGIPVEPSRR-------TYALKQWLEER 102 (270)
T ss_pred HHHHHHHHhcCCCCcEEEE------------------EhHHHHHHHHHHHHHCCCceeeccc-------HHHHHHHHHHH
Confidence 4566666677777875211 1112466788889999999998876 57899999998
Q ss_pred C
Q 005905 635 L 635 (670)
Q Consensus 635 ~ 635 (670)
.
T Consensus 103 ~ 103 (270)
T PF06485_consen 103 E 103 (270)
T ss_pred H
Confidence 3
No 435
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=20.60 E-value=1.5e+03 Score=27.10 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHHC
Q 005905 227 EVYTIAINCCSQTG--DWEFACSVYDDMTKK 255 (670)
Q Consensus 227 ~~~~~li~~~~~~g--~~~~A~~l~~~m~~~ 255 (670)
.-...+|.+|.+.+ ++++|+.+..++.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 44567889999998 899999999999876
No 436
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=20.22 E-value=8.3e+02 Score=24.00 Aligned_cols=193 Identities=15% Similarity=0.024 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHH
Q 005905 205 GQVDRAREVYKMIHKYNIK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEA 279 (670)
Q Consensus 205 g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~ 279 (670)
+++..+...+......+.. .................+..+|..+|..+.+.| .......|-..|.. ..+..+
T Consensus 55 ~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 55 PDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHH
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHhc-----CCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhCCChh
Q 005905 280 AFEILQEAKNQGISVGIISYSSLMGACSNA-----KNWQ--KALELYEHMKSIKLKPTVSTMNALITAL----CDGDQLP 348 (670)
Q Consensus 280 A~~i~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~--~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~~~ 348 (670)
|...+....+.|..+...+...+..+|..- -..+ .|...|.+.-..+ +......+...| .-..+..
T Consensus 132 A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~ 208 (292)
T COG0790 132 ALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLK 208 (292)
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHH
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005905 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKD---------------DVEVGLMLLSQAKEDGVIPNLVMFKCI 407 (670)
Q Consensus 349 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------------~~~~a~~~~~~m~~~g~~p~~~~~~~l 407 (670)
+|...|....+.|. ......+- .+...| +...|...+......+..........+
T Consensus 209 ~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 278 (292)
T COG0790 209 KAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRAL 278 (292)
T ss_pred HHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHH
No 437
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=20.17 E-value=1.9e+02 Score=16.68 Aligned_cols=14 Identities=29% Similarity=0.681 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHHHH
Q 005905 206 QVDRAREVYKMIHK 219 (670)
Q Consensus 206 ~~~~A~~~~~~m~~ 219 (670)
+.+.|..+|+.+..
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34444444444443
Done!