Query 005905
Match_columns 670
No_of_seqs 761 out of 3812
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 10:38:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005905.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005905hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.3E-31 2.1E-35 293.5 41.1 427 27-490 82-582 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.3E-29 4.4E-34 282.9 43.6 372 30-413 122-562 (597)
3 4g26_A Pentatricopeptide repea 100.0 1.9E-30 6.4E-35 279.6 26.1 204 210-413 9-222 (501)
4 4g26_A Pentatricopeptide repea 100.0 4.6E-30 1.6E-34 276.6 25.0 208 171-379 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 1.9E-23 6.6E-28 219.7 45.8 352 33-395 7-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 6.3E-21 2.2E-25 200.4 44.4 340 29-380 37-387 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.1E-18 3.9E-23 186.8 38.6 316 30-373 31-370 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 3.6E-18 1.2E-22 182.9 41.3 298 92-402 26-363 (450)
9 2gw1_A Mitochondrial precursor 99.9 6.4E-19 2.2E-23 192.0 36.0 374 29-412 10-460 (514)
10 3fp2_A TPR repeat-containing p 99.8 2.7E-17 9.3E-22 180.3 35.9 383 32-429 32-492 (537)
11 2gw1_A Mitochondrial precursor 99.8 9.2E-17 3.1E-21 174.9 35.9 369 24-404 38-485 (514)
12 3ieg_A DNAJ homolog subfamily 99.8 1.9E-15 6.4E-20 155.9 41.1 307 27-359 5-334 (359)
13 3ieg_A DNAJ homolog subfamily 99.8 3E-15 1E-19 154.4 42.1 303 94-408 5-347 (359)
14 3fp2_A TPR repeat-containing p 99.8 1.9E-15 6.5E-20 165.5 38.5 325 64-395 28-407 (537)
15 3spa_A Mtrpol, DNA-directed RN 99.7 6.1E-18 2.1E-22 186.9 13.7 118 296-413 127-248 (1134)
16 3hym_B Cell division cycle pro 99.7 3.4E-15 1.2E-19 152.1 31.4 207 162-376 98-314 (330)
17 3spa_A Mtrpol, DNA-directed RN 99.7 4.7E-18 1.6E-22 187.7 9.8 118 226-343 127-248 (1134)
18 3hym_B Cell division cycle pro 99.7 6.4E-15 2.2E-19 150.1 31.2 286 90-411 20-314 (330)
19 1fch_A Peroxisomal targeting s 99.7 3.6E-15 1.2E-19 154.8 24.4 307 39-391 15-355 (368)
20 4eqf_A PEX5-related protein; a 99.7 2.9E-15 1E-19 155.6 23.4 268 91-391 64-352 (365)
21 1fch_A Peroxisomal targeting s 99.7 2.8E-15 9.6E-20 155.6 22.6 261 154-421 64-352 (368)
22 2xm6_A Protein corresponding t 99.7 5.7E-12 1.9E-16 136.5 47.3 332 38-396 56-433 (490)
23 1b89_A Protein (clathrin heavy 99.7 2E-15 6.9E-20 155.3 18.6 287 31-353 8-304 (449)
24 4eqf_A PEX5-related protein; a 99.7 9.9E-15 3.4E-19 151.5 23.5 237 153-395 64-310 (365)
25 3cv0_A Peroxisome targeting si 99.7 2.7E-14 9.4E-19 145.2 26.3 265 93-392 22-312 (327)
26 3mkr_A Coatomer subunit epsilo 99.6 5.6E-14 1.9E-18 140.8 27.6 248 104-367 11-269 (291)
27 3mkr_A Coatomer subunit epsilo 99.6 1.5E-13 5.2E-18 137.7 30.6 252 31-291 5-265 (291)
28 3cv0_A Peroxisome targeting si 99.6 1.4E-13 4.8E-18 139.9 27.8 236 153-396 20-270 (327)
29 2xm6_A Protein corresponding t 99.6 6.5E-11 2.2E-15 128.1 49.9 376 44-468 26-448 (490)
30 1b89_A Protein (clathrin heavy 99.6 3.1E-15 1.1E-19 153.9 13.4 276 72-387 14-303 (449)
31 2ooe_A Cleavage stimulation fa 99.6 1.4E-11 4.7E-16 134.9 41.8 380 36-422 23-486 (530)
32 1xi4_A Clathrin heavy chain; a 99.6 2.1E-11 7E-16 139.4 42.8 342 22-413 982-1326(1630)
33 2ooe_A Cleavage stimulation fa 99.5 7.9E-11 2.7E-15 128.7 42.2 393 48-452 2-491 (530)
34 3uq3_A Heat shock protein STI1 99.5 2.2E-12 7.4E-17 126.1 26.0 226 154-395 5-236 (258)
35 2pl2_A Hypothetical conserved 99.5 1E-12 3.5E-17 125.5 22.8 199 151-357 2-211 (217)
36 2ho1_A Type 4 fimbrial biogene 99.5 6.7E-12 2.3E-16 122.5 26.6 200 154-359 37-237 (252)
37 4g1t_A Interferon-induced prot 99.5 1E-11 3.6E-16 133.4 30.1 298 61-366 51-405 (472)
38 2vq2_A PILW, putative fimbrial 99.5 1.1E-11 3.6E-16 118.4 26.9 201 154-359 8-210 (225)
39 2pl2_A Hypothetical conserved 99.5 3E-12 1E-16 122.3 22.1 201 188-394 2-213 (217)
40 2ho1_A Type 4 fimbrial biogene 99.5 1.7E-11 6E-16 119.5 27.3 208 191-404 37-245 (252)
41 4g1t_A Interferon-induced prot 99.5 7.4E-11 2.5E-15 126.7 34.7 302 91-402 50-406 (472)
42 3uq3_A Heat shock protein STI1 99.5 2.2E-11 7.5E-16 118.9 27.5 227 92-359 5-235 (258)
43 1ouv_A Conserved hypothetical 99.5 1.4E-10 4.9E-15 114.7 33.2 224 153-396 5-252 (273)
44 2vq2_A PILW, putative fimbrial 99.5 2.9E-11 9.8E-16 115.3 27.1 211 190-405 7-219 (225)
45 1xi4_A Clathrin heavy chain; a 99.5 2.8E-10 9.5E-15 130.3 38.3 290 33-351 1057-1375(1630)
46 2q7f_A YRRB protein; TPR, prot 99.5 7E-12 2.4E-16 121.4 22.0 201 153-360 22-222 (243)
47 2h6f_A Protein farnesyltransfe 99.4 3.3E-11 1.1E-15 125.0 26.3 246 153-410 96-362 (382)
48 1xnf_A Lipoprotein NLPI; TPR, 99.4 6.9E-12 2.4E-16 123.9 20.1 196 156-359 45-243 (275)
49 2q7f_A YRRB protein; TPR, prot 99.4 1.5E-11 5.1E-16 119.0 21.3 203 189-396 21-223 (243)
50 3u4t_A TPR repeat-containing p 99.4 4.6E-11 1.6E-15 117.9 24.9 239 156-402 5-255 (272)
51 1xnf_A Lipoprotein NLPI; TPR, 99.4 3.4E-11 1.2E-15 118.9 23.2 223 165-396 16-245 (275)
52 1ouv_A Conserved hypothetical 99.4 1.2E-09 4.2E-14 107.9 33.7 225 90-361 4-252 (273)
53 3u4t_A TPR repeat-containing p 99.4 7.2E-11 2.5E-15 116.5 24.3 237 95-366 6-254 (272)
54 3e4b_A ALGK; tetratricopeptide 99.4 1.8E-10 6.3E-15 122.9 27.7 341 28-397 6-389 (452)
55 2h6f_A Protein farnesyltransfe 99.4 2.3E-10 7.9E-15 118.6 26.8 246 92-375 97-362 (382)
56 3vtx_A MAMA; tetratricopeptide 99.3 3.3E-10 1.1E-14 104.6 23.3 165 191-359 5-169 (184)
57 2ond_A Cleavage stimulation fa 99.3 2E-09 6.7E-14 108.7 29.8 219 171-395 33-270 (308)
58 3vtx_A MAMA; tetratricopeptide 99.3 7.6E-10 2.6E-14 102.2 22.8 168 152-325 3-170 (184)
59 2ond_A Cleavage stimulation fa 99.3 2.7E-09 9.3E-14 107.6 28.3 225 109-360 33-270 (308)
60 3sf4_A G-protein-signaling mod 99.3 1.1E-10 3.9E-15 122.1 18.8 202 193-394 89-335 (406)
61 4a1s_A PINS, partner of inscut 99.3 3.6E-10 1.2E-14 118.9 22.6 278 94-395 50-372 (411)
62 4abn_A Tetratricopeptide repea 99.2 3.6E-10 1.2E-14 121.4 20.4 213 170-390 84-316 (474)
63 3ro2_A PINS homolog, G-protein 99.2 3.1E-10 1.1E-14 115.0 18.3 133 263-395 185-332 (338)
64 3ulq_A Response regulator aspa 99.2 1.2E-09 4.1E-14 113.9 23.1 309 25-359 12-367 (383)
65 4a1s_A PINS, partner of inscut 99.2 2.9E-10 9.8E-15 119.6 17.9 237 155-395 49-332 (411)
66 3ulq_A Response regulator aspa 99.2 2.9E-09 9.9E-14 111.0 24.8 231 160-394 109-367 (383)
67 3nf1_A KLC 1, kinesin light ch 99.2 5E-10 1.7E-14 112.5 18.3 241 153-394 26-306 (311)
68 3sf4_A G-protein-signaling mod 99.2 1E-09 3.4E-14 114.9 20.0 241 151-395 6-296 (406)
69 3nf1_A KLC 1, kinesin light ch 99.2 9.7E-10 3.3E-14 110.4 18.7 233 126-359 26-306 (311)
70 3ro2_A PINS homolog, G-protein 99.2 8.2E-10 2.8E-14 111.9 18.2 237 155-395 6-292 (338)
71 3as5_A MAMA; tetratricopeptide 99.2 5.4E-09 1.8E-13 95.8 22.1 163 155-323 9-171 (186)
72 4abn_A Tetratricopeptide repea 99.2 1.5E-09 5.1E-14 116.6 21.0 194 157-358 105-319 (474)
73 3as5_A MAMA; tetratricopeptide 99.1 4.1E-09 1.4E-13 96.6 20.6 162 193-358 10-171 (186)
74 3e4b_A ALGK; tetratricopeptide 99.1 8.5E-09 2.9E-13 110.0 22.5 299 37-361 47-388 (452)
75 1hz4_A MALT regulatory protein 99.1 6.8E-08 2.3E-12 100.0 28.8 275 96-394 18-321 (373)
76 4gyw_A UDP-N-acetylglucosamine 99.1 7.6E-09 2.6E-13 115.9 22.7 165 191-359 9-173 (723)
77 3q15_A PSP28, response regulat 99.1 3.5E-08 1.2E-12 102.5 26.3 307 25-358 12-363 (378)
78 3q15_A PSP28, response regulat 99.1 6.1E-08 2.1E-12 100.7 27.7 231 159-394 106-364 (378)
79 4gyw_A UDP-N-acetylglucosamine 99.0 1.2E-08 4.2E-13 114.3 21.0 165 153-324 8-173 (723)
80 4e6h_A MRNA 3'-END-processing 99.0 1.4E-06 4.8E-11 96.5 37.1 364 28-396 65-534 (679)
81 4i17_A Hypothetical protein; T 99.0 3.9E-08 1.3E-12 94.0 21.7 100 153-255 6-105 (228)
82 4i17_A Hypothetical protein; T 99.0 6.8E-08 2.3E-12 92.3 22.5 195 189-395 5-209 (228)
83 3edt_B KLC 2, kinesin light ch 99.0 4.8E-09 1.6E-13 103.4 13.9 229 166-394 13-280 (283)
84 3edt_B KLC 2, kinesin light ch 98.9 8.7E-09 3E-13 101.6 14.8 206 153-359 42-280 (283)
85 1hz4_A MALT regulatory protein 98.9 2.8E-07 9.5E-12 95.3 24.9 235 158-394 18-281 (373)
86 3mv2_B Coatomer subunit epsilo 98.9 6.3E-07 2.2E-11 88.3 24.9 183 173-366 85-286 (310)
87 2fo7_A Synthetic consensus TPR 98.9 1.5E-07 5.2E-12 80.7 18.3 20 337-356 109-128 (136)
88 2fo7_A Synthetic consensus TPR 98.9 1.4E-07 4.9E-12 80.9 17.7 128 194-324 4-131 (136)
89 4e6h_A MRNA 3'-END-processing 98.8 4.1E-05 1.4E-09 84.7 40.6 363 41-411 48-514 (679)
90 1qqe_A Vesicular transport pro 98.8 1.2E-07 4.2E-12 94.6 17.4 129 263-393 119-267 (292)
91 1qqe_A Vesicular transport pro 98.8 1.1E-07 3.6E-12 95.0 16.7 160 235-394 46-227 (292)
92 3urz_A Uncharacterized protein 98.7 3.7E-07 1.3E-11 86.0 17.9 74 267-342 60-133 (208)
93 3urz_A Uncharacterized protein 98.7 7.1E-07 2.4E-11 84.0 18.9 185 157-370 7-194 (208)
94 3qky_A Outer membrane assembly 98.7 3.4E-07 1.2E-11 89.5 17.4 186 152-360 13-224 (261)
95 3qky_A Outer membrane assembly 98.7 1.1E-06 3.9E-11 85.7 20.4 188 190-401 14-228 (261)
96 2pzi_A Probable serine/threoni 98.7 1.8E-07 6.2E-12 105.0 15.6 174 165-346 402-583 (681)
97 2r5s_A Uncharacterized protein 98.6 3.6E-07 1.2E-11 83.4 14.1 161 194-358 9-171 (176)
98 3dra_A Protein farnesyltransfe 98.6 1.6E-05 5.4E-10 79.0 26.2 225 162-394 41-286 (306)
99 2pzi_A Probable serine/threoni 98.6 3.9E-07 1.3E-11 102.3 15.5 173 202-381 402-583 (681)
100 2yhc_A BAMD, UPF0169 lipoprote 98.6 3.2E-06 1.1E-10 80.5 19.7 188 153-360 3-213 (225)
101 3rjv_A Putative SEL1 repeat pr 98.6 4.8E-06 1.6E-10 78.5 20.5 175 210-396 5-198 (212)
102 4ga2_A E3 SUMO-protein ligase 98.6 3.1E-07 1.1E-11 81.4 11.5 143 161-310 4-148 (150)
103 3mv2_B Coatomer subunit epsilo 98.6 2.7E-06 9.4E-11 83.8 19.0 180 210-396 85-283 (310)
104 2vsy_A XCC0866; transferase, g 98.6 1.4E-06 4.9E-11 95.7 18.7 154 167-326 2-158 (568)
105 2vsy_A XCC0866; transferase, g 98.6 1.4E-06 4.8E-11 95.8 18.5 151 205-359 3-156 (568)
106 3rjv_A Putative SEL1 repeat pr 98.6 5.7E-06 2E-10 78.0 20.2 178 171-362 3-199 (212)
107 2yhc_A BAMD, UPF0169 lipoprote 98.5 7.7E-06 2.6E-10 77.8 20.5 185 192-396 5-214 (225)
108 4ga2_A E3 SUMO-protein ligase 98.5 2.4E-07 8.3E-12 82.2 9.1 112 238-352 9-120 (150)
109 3qou_A Protein YBBN; thioredox 98.5 1.9E-06 6.3E-11 85.7 16.5 165 190-358 116-282 (287)
110 2ifu_A Gamma-SNAP; membrane fu 98.5 1.9E-06 6.6E-11 86.5 16.2 191 167-358 4-222 (307)
111 3u3w_A Transcriptional activat 98.5 1.4E-05 4.6E-10 79.6 22.0 197 123-322 42-263 (293)
112 2r5s_A Uncharacterized protein 98.5 1.7E-06 5.8E-11 78.9 13.8 161 157-323 9-171 (176)
113 3dra_A Protein farnesyltransfe 98.5 7.6E-05 2.6E-09 74.1 26.3 228 104-367 45-293 (306)
114 3qou_A Protein YBBN; thioredox 98.5 2.8E-06 9.7E-11 84.3 16.1 165 223-393 114-282 (287)
115 2ifu_A Gamma-SNAP; membrane fu 98.4 4.4E-06 1.5E-10 83.8 16.0 189 204-393 4-222 (307)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.4 2.1E-05 7.3E-10 73.6 19.5 129 156-291 8-151 (213)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.4 1.8E-05 6E-10 74.2 18.8 129 193-326 8-151 (213)
118 3gyz_A Chaperone protein IPGC; 98.4 4.1E-06 1.4E-10 74.1 12.6 124 129-256 11-134 (151)
119 3q7a_A Farnesyltransferase alp 98.3 0.00028 9.5E-09 70.9 26.9 231 156-394 56-330 (349)
120 1na0_A Designed protein CTPR3; 98.3 2.2E-05 7.4E-10 65.9 16.2 98 154-255 9-106 (125)
121 1a17_A Serine/threonine protei 98.3 2.3E-05 8E-10 69.8 17.2 92 196-289 18-109 (166)
122 3u3w_A Transcriptional activat 98.3 2.6E-05 9E-10 77.4 19.1 125 198-322 82-222 (293)
123 1na0_A Designed protein CTPR3; 98.3 2.7E-05 9.4E-10 65.2 16.5 97 192-290 10-106 (125)
124 1a17_A Serine/threonine protei 98.3 2.5E-05 8.4E-10 69.6 16.9 130 154-288 13-144 (166)
125 2qfc_A PLCR protein; TPR, HTH, 98.3 7E-05 2.4E-09 74.3 20.4 167 228-394 77-265 (293)
126 4gco_A Protein STI-1; structur 98.3 3.4E-05 1.2E-09 65.7 15.6 61 193-254 49-109 (126)
127 4gco_A Protein STI-1; structur 98.3 3.1E-05 1E-09 66.0 15.3 115 187-304 8-123 (126)
128 2qfc_A PLCR protein; TPR, HTH, 98.2 0.00013 4.5E-09 72.3 21.8 161 197-358 81-264 (293)
129 2lni_A Stress-induced-phosphop 98.2 3.1E-05 1.1E-09 66.0 14.9 93 194-288 19-111 (133)
130 2vyi_A SGTA protein; chaperone 98.2 3.1E-05 1.1E-09 65.5 14.9 116 155-275 13-128 (131)
131 3gw4_A Uncharacterized protein 98.2 1.1E-05 3.9E-10 74.7 13.1 26 227-252 27-52 (203)
132 2c2l_A CHIP, carboxy terminus 98.2 4.2E-06 1.4E-10 82.8 10.2 187 193-394 6-198 (281)
133 3gw4_A Uncharacterized protein 98.2 1.5E-05 5E-10 74.0 13.4 156 237-394 3-175 (203)
134 2vyi_A SGTA protein; chaperone 98.2 3.4E-05 1.2E-09 65.3 14.7 95 193-289 14-108 (131)
135 2e2e_A Formate-dependent nitri 98.2 1.7E-05 5.9E-10 71.9 13.3 120 203-325 22-144 (177)
136 2lni_A Stress-induced-phosphop 98.2 3.2E-05 1.1E-09 65.8 14.0 120 151-275 13-132 (133)
137 3gyz_A Chaperone protein IPGC; 98.2 1.4E-05 4.7E-10 70.6 11.4 95 298-394 38-132 (151)
138 2uy1_A Cleavage stimulation fa 98.1 0.003 1E-07 67.5 31.6 336 37-410 26-393 (493)
139 1p5q_A FKBP52, FK506-binding p 98.1 3.5E-05 1.2E-09 78.2 15.6 122 153-280 146-283 (336)
140 2e2e_A Formate-dependent nitri 98.1 1E-05 3.6E-10 73.4 10.5 120 273-395 22-144 (177)
141 2c2l_A CHIP, carboxy terminus 98.1 7.3E-06 2.5E-10 81.0 10.1 184 225-423 3-194 (281)
142 4f3v_A ESX-1 secretion system 98.1 6E-05 2E-09 73.2 15.5 201 203-409 18-249 (282)
143 1p5q_A FKBP52, FK506-binding p 98.1 7.7E-05 2.6E-09 75.7 16.8 123 191-315 147-283 (336)
144 3dss_A Geranylgeranyl transfer 98.1 0.0024 8.3E-08 63.7 27.1 219 165-394 40-303 (331)
145 2uy1_A Cleavage stimulation fa 98.1 0.0035 1.2E-07 66.9 30.4 328 38-423 7-378 (493)
146 1elw_A TPR1-domain of HOP; HOP 98.1 0.00019 6.6E-09 59.2 16.0 95 156-254 6-100 (118)
147 2vgx_A Chaperone SYCD; alterna 98.0 1.4E-05 4.7E-10 70.4 9.0 97 296-394 21-117 (148)
148 1elw_A TPR1-domain of HOP; HOP 98.0 0.0002 6.7E-09 59.2 15.8 112 191-305 4-115 (118)
149 4f3v_A ESX-1 secretion system 98.0 0.00021 7.3E-09 69.3 17.9 181 104-290 18-237 (282)
150 2vgx_A Chaperone SYCD; alterna 98.0 2.2E-05 7.5E-10 69.1 10.0 10 205-214 35-44 (148)
151 3q7a_A Farnesyltransferase alp 98.0 0.0033 1.1E-07 63.0 26.8 31 329-359 300-330 (349)
152 2dba_A Smooth muscle cell asso 98.0 0.00026 9.1E-09 61.3 16.6 110 152-267 26-139 (148)
153 3upv_A Heat shock protein STI1 98.0 0.00015 5.1E-09 61.4 14.3 97 155-255 5-101 (126)
154 2fbn_A 70 kDa peptidylprolyl i 98.0 1.3E-05 4.4E-10 74.5 7.9 120 227-348 39-173 (198)
155 3upv_A Heat shock protein STI1 98.0 0.00018 6.1E-09 60.9 14.3 60 297-357 39-98 (126)
156 4b4t_Q 26S proteasome regulato 97.9 0.0018 6.1E-08 67.8 24.3 198 161-359 11-244 (434)
157 2fbn_A 70 kDa peptidylprolyl i 97.9 0.00018 6E-09 66.6 14.5 124 154-280 38-175 (198)
158 2kck_A TPR repeat; tetratricop 97.9 0.0001 3.6E-09 60.3 11.6 98 155-256 7-107 (112)
159 4b4t_Q 26S proteasome regulato 97.9 0.00082 2.8E-08 70.4 20.9 197 198-394 11-244 (434)
160 2xcb_A PCRH, regulatory protei 97.9 0.00017 6E-09 62.6 12.9 94 157-254 21-114 (142)
161 3q49_B STIP1 homology and U bo 97.9 0.00031 1.1E-08 60.1 14.4 98 153-254 8-105 (137)
162 4gcn_A Protein STI-1; structur 97.9 0.00031 1.1E-08 59.7 14.1 55 197-252 14-68 (127)
163 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00027 9.4E-09 63.0 14.3 100 153-256 10-109 (164)
164 3q49_B STIP1 homology and U bo 97.9 0.00041 1.4E-08 59.4 14.9 98 190-289 8-105 (137)
165 1elr_A TPR2A-domain of HOP; HO 97.9 0.00017 5.7E-09 60.9 12.2 27 298-324 81-107 (131)
166 2kck_A TPR repeat; tetratricop 97.9 0.00014 5E-09 59.4 11.5 27 332-358 77-104 (112)
167 1elr_A TPR2A-domain of HOP; HO 97.8 0.00018 6E-09 60.8 12.3 108 155-267 5-118 (131)
168 2xcb_A PCRH, regulatory protei 97.8 0.00027 9.2E-09 61.4 13.4 96 193-290 20-115 (142)
169 4gcn_A Protein STI-1; structur 97.8 0.00029 9.8E-09 59.9 13.1 56 301-357 13-68 (127)
170 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00041 1.4E-08 61.8 14.6 99 190-290 10-108 (164)
171 2dba_A Smooth muscle cell asso 97.8 0.0007 2.4E-08 58.6 15.8 96 226-324 28-127 (148)
172 3dss_A Geranylgeranyl transfer 97.8 0.03 1E-06 55.7 29.0 185 37-255 41-267 (331)
173 1hxi_A PEX5, peroxisome target 97.7 0.00029 9.8E-09 59.4 11.4 94 158-255 21-114 (121)
174 2xev_A YBGF; tetratricopeptide 97.7 0.0011 3.7E-08 56.0 14.8 93 159-256 7-106 (129)
175 1hxi_A PEX5, peroxisome target 97.7 0.00045 1.5E-08 58.2 11.6 95 194-290 20-114 (121)
176 1wao_1 Serine/threonine protei 97.7 0.0003 1E-08 75.0 12.9 87 164-254 16-102 (477)
177 3ro3_A PINS homolog, G-protein 97.6 0.00032 1.1E-08 61.6 10.9 97 298-394 51-157 (164)
178 3ro3_A PINS homolog, G-protein 97.6 0.00041 1.4E-08 60.8 11.4 129 194-322 12-155 (164)
179 2xev_A YBGF; tetratricopeptide 97.5 0.0033 1.1E-07 52.9 15.5 93 197-290 8-105 (129)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00084 2.9E-08 71.2 14.0 120 154-279 268-403 (457)
181 1wao_1 Serine/threonine protei 97.5 0.00026 8.9E-09 75.5 10.0 119 234-355 14-134 (477)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.0013 4.3E-08 69.8 15.3 88 262-351 318-405 (457)
183 1ihg_A Cyclophilin 40; ppiase 97.5 0.0011 3.7E-08 68.1 13.8 85 227-313 274-358 (370)
184 3rkv_A Putative peptidylprolyl 97.4 0.0014 4.9E-08 58.1 12.4 62 297-359 64-125 (162)
185 1ihg_A Cyclophilin 40; ppiase 97.4 0.0013 4.4E-08 67.5 13.7 126 155-282 224-362 (370)
186 2hr2_A Hypothetical protein; a 97.4 0.0018 6.3E-08 56.7 12.2 94 156-254 13-130 (159)
187 3k9i_A BH0479 protein; putativ 97.4 0.00026 9E-09 59.0 6.6 84 275-359 4-89 (117)
188 3rkv_A Putative peptidylprolyl 97.4 0.0027 9.2E-08 56.2 13.8 61 228-289 65-125 (162)
189 1dce_A Protein (RAB geranylger 97.4 0.0073 2.5E-07 65.6 19.6 174 168-349 43-244 (567)
190 3k9i_A BH0479 protein; putativ 97.4 0.00032 1.1E-08 58.5 6.9 87 167-255 3-90 (117)
191 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00056 1.9E-08 69.3 9.2 149 154-325 179-328 (338)
192 2if4_A ATFKBP42; FKBP-like, al 97.2 0.0012 3.9E-08 67.0 10.2 145 228-394 181-327 (338)
193 3n71_A Histone lysine methyltr 97.2 0.0025 8.7E-08 67.6 12.7 63 297-359 394-463 (490)
194 3n71_A Histone lysine methyltr 97.1 0.002 6.8E-08 68.4 11.2 123 273-395 321-464 (490)
195 2hr2_A Hypothetical protein; a 97.1 0.0076 2.6E-07 52.7 12.9 62 193-254 13-85 (159)
196 1klx_A Cysteine rich protein B 97.1 0.018 6E-07 49.5 15.1 79 275-359 39-125 (138)
197 1dce_A Protein (RAB geranylger 97.0 0.034 1.2E-06 60.3 20.0 169 207-381 45-241 (567)
198 1klx_A Cysteine rich protein B 97.0 0.027 9.4E-07 48.2 15.3 110 206-326 10-127 (138)
199 2l6j_A TPR repeat-containing p 96.9 0.00077 2.6E-08 55.1 4.9 91 153-247 3-99 (111)
200 2l6j_A TPR repeat-containing p 96.9 0.0014 4.9E-08 53.4 6.1 60 264-324 7-66 (111)
201 1na3_A Designed protein CTPR2; 96.9 0.013 4.3E-07 45.5 11.2 60 194-254 12-71 (91)
202 1na3_A Designed protein CTPR2; 96.8 0.012 4E-07 45.6 10.9 83 154-240 9-91 (91)
203 2kat_A Uncharacterized protein 96.8 0.011 3.7E-07 48.6 10.9 80 172-255 3-82 (115)
204 2kat_A Uncharacterized protein 96.7 0.0095 3.2E-07 49.0 9.9 78 210-289 4-81 (115)
205 1zu2_A Mitochondrial import re 96.6 0.012 4E-07 51.4 10.0 100 165-270 13-133 (158)
206 1zu2_A Mitochondrial import re 96.5 0.0033 1.1E-07 54.9 6.0 29 380-410 105-133 (158)
207 3ma5_A Tetratricopeptide repea 96.3 0.012 4.3E-07 47.0 7.8 63 295-358 6-68 (100)
208 3mkq_A Coatomer beta'-subunit; 96.2 0.19 6.6E-06 57.0 20.4 149 73-252 611-762 (814)
209 3ma5_A Tetratricopeptide repea 96.2 0.026 8.7E-07 45.1 9.3 61 192-253 8-68 (100)
210 3fau_A NEDD4-binding protein 2 95.9 0.014 4.8E-07 44.8 6.0 78 535-622 2-79 (82)
211 3ly7_A Transcriptional activat 95.6 0.15 5E-06 51.1 13.3 72 329-404 275-346 (372)
212 3qww_A SET and MYND domain-con 95.4 0.041 1.4E-06 57.2 9.0 85 274-358 311-409 (433)
213 3qwp_A SET and MYND domain-con 95.3 0.11 3.8E-06 54.0 12.1 86 203-288 299-398 (429)
214 3qwp_A SET and MYND domain-con 95.3 0.08 2.7E-06 55.1 11.0 86 271-356 297-396 (429)
215 3ly7_A Transcriptional activat 95.3 1.1 3.9E-05 44.7 18.6 74 293-370 274-347 (372)
216 3qww_A SET and MYND domain-con 95.1 0.046 1.6E-06 56.8 8.5 62 227-288 341-409 (433)
217 2kc7_A BFR218_protein; tetratr 95.1 0.14 4.9E-06 40.1 9.6 54 201-255 10-64 (99)
218 2kc7_A BFR218_protein; tetratr 95.0 0.064 2.2E-06 42.3 7.2 65 160-229 6-72 (99)
219 3mkq_A Coatomer beta'-subunit; 94.4 0.66 2.3E-05 52.5 16.5 76 230-323 633-708 (814)
220 2d9i_A NEDD4-binding protein 2 94.1 0.2 6.9E-06 39.6 8.0 80 533-622 8-87 (96)
221 1pc2_A Mitochondria fission pr 94.1 0.58 2E-05 40.3 11.4 95 312-410 14-113 (152)
222 3bee_A Putative YFRE protein; 93.8 0.54 1.8E-05 36.8 9.9 66 190-256 5-73 (93)
223 3u64_A Protein TP_0956; tetrat 93.7 2.2 7.4E-05 41.0 15.7 64 297-360 200-269 (301)
224 1pc2_A Mitochondria fission pr 93.7 0.39 1.3E-05 41.3 9.5 84 278-365 15-103 (152)
225 2v5f_A Prolyl 4-hydroxylase su 92.8 1.2 4E-05 35.5 10.8 64 192-255 6-75 (104)
226 3bee_A Putative YFRE protein; 92.5 0.82 2.8E-05 35.7 9.2 47 312-359 25-71 (93)
227 2vkc_A NEDD4-binding protein 2 92.3 0.23 7.9E-06 42.0 6.0 79 534-622 54-132 (135)
228 3mkq_B Coatomer subunit alpha; 92.3 5.6 0.00019 35.0 15.6 100 201-321 15-114 (177)
229 1wy6_A Hypothetical protein ST 92.2 4.5 0.00015 33.7 14.8 138 239-398 20-157 (172)
230 3mkq_B Coatomer subunit alpha; 91.8 2.6 8.7E-05 37.2 12.3 27 154-180 34-60 (177)
231 2v5f_A Prolyl 4-hydroxylase su 91.7 1.3 4.5E-05 35.2 9.8 63 297-359 6-74 (104)
232 3u64_A Protein TP_0956; tetrat 91.6 1.3 4.5E-05 42.5 10.9 94 170-267 179-283 (301)
233 1wy6_A Hypothetical protein ST 91.1 6 0.00021 33.0 14.8 64 262-326 92-155 (172)
234 4h7y_A Dual specificity protei 89.6 2.2 7.5E-05 36.3 9.3 53 275-328 74-126 (161)
235 4b4t_P 26S proteasome regulato 89.3 16 0.00054 37.8 18.0 245 168-413 30-305 (445)
236 4h7y_A Dual specificity protei 88.7 3.7 0.00013 34.9 10.0 54 240-294 74-127 (161)
237 2ff4_A Probable regulatory pro 87.5 8.5 0.00029 39.0 14.3 129 153-300 111-249 (388)
238 1nzn_A CGI-135 protein, fissio 87.5 2.6 8.9E-05 34.8 8.3 20 375-394 83-102 (126)
239 4gns_B Protein CSD3, chitin bi 85.2 4.2 0.00014 45.0 11.0 52 305-357 346-397 (754)
240 1nzn_A CGI-135 protein, fissio 84.8 5.6 0.00019 32.8 9.0 96 267-366 7-107 (126)
241 4gns_B Protein CSD3, chitin bi 84.2 4.7 0.00016 44.6 10.8 128 195-323 252-398 (754)
242 2ff4_A Probable regulatory pro 83.6 4.1 0.00014 41.4 9.6 71 334-405 174-249 (388)
243 4fhn_B Nucleoporin NUP120; pro 79.3 60 0.0021 38.1 18.7 148 159-315 817-990 (1139)
244 1v54_E Cytochrome C oxidase po 78.4 15 0.00051 28.8 8.6 45 279-323 28-72 (109)
245 1v54_E Cytochrome C oxidase po 77.8 15 0.0005 28.8 8.4 65 346-411 25-89 (109)
246 2p58_C Putative type III secre 71.8 20 0.00069 27.9 7.7 85 276-369 22-106 (116)
247 3lvg_A Clathrin heavy chain 1; 70.7 0.043 1.5E-06 56.3 -9.4 239 66-321 59-316 (624)
248 2uwj_G Type III export protein 70.4 19 0.00065 28.0 7.3 86 276-370 21-106 (115)
249 2y69_E Cytochrome C oxidase su 69.4 46 0.0016 27.6 9.8 64 347-411 69-132 (152)
250 2y69_E Cytochrome C oxidase su 68.6 30 0.001 28.7 8.6 46 279-324 71-116 (152)
251 2uwj_G Type III export protein 68.5 40 0.0014 26.3 9.3 80 38-122 19-98 (115)
252 2p58_C Putative type III secre 67.7 42 0.0014 26.2 8.8 80 38-122 20-99 (116)
253 4fhn_B Nucleoporin NUP120; pro 67.5 67 0.0023 37.7 15.2 89 296-386 899-991 (1139)
254 3o48_A Mitochondria fission 1 62.4 61 0.0021 26.8 9.5 79 328-408 37-118 (134)
255 3ffl_A Anaphase-promoting comp 62.0 52 0.0018 28.4 9.4 118 194-324 23-150 (167)
256 3lvg_A Clathrin heavy chain 1; 61.7 0.055 1.9E-06 55.5 -10.6 269 77-390 41-315 (624)
257 4b4t_R RPN7, 26S proteasome re 59.6 44 0.0015 34.2 10.4 98 193-290 133-237 (429)
258 4b4t_R RPN7, 26S proteasome re 58.4 98 0.0033 31.5 12.8 98 227-324 132-236 (429)
259 1zbp_A Hypothetical protein VP 55.4 16 0.00056 34.4 5.6 52 32-85 4-55 (273)
260 3o48_A Mitochondria fission 1 55.0 89 0.0031 25.8 12.0 73 293-367 37-112 (134)
261 1zbp_A Hypothetical protein VP 54.7 42 0.0014 31.7 8.2 52 237-289 8-59 (273)
262 3esl_A Checkpoint serine/threo 54.6 22 0.00075 31.9 6.0 62 26-87 77-141 (202)
263 3eiq_C Programmed cell death p 51.5 1.2E+02 0.004 30.1 11.3 77 333-410 219-297 (358)
264 1y8m_A FIS1; mitochondria, unk 50.7 1.1E+02 0.0038 25.6 11.9 78 328-407 36-116 (144)
265 4ady_A RPN2, 26S proteasome re 49.1 3.4E+02 0.012 30.8 23.7 168 200-377 499-672 (963)
266 4b4t_P 26S proteasome regulato 48.7 2.3E+02 0.008 28.8 20.9 163 228-390 139-319 (445)
267 3eiq_C Programmed cell death p 48.1 2.1E+02 0.0073 28.2 13.3 27 156-182 56-82 (358)
268 3ffl_A Anaphase-promoting comp 45.6 1.5E+02 0.005 25.6 9.5 59 160-219 26-91 (167)
269 3esl_A Checkpoint serine/threo 45.4 1.7E+02 0.0057 26.2 11.1 57 204-260 92-149 (202)
270 4a1g_A Mitotic checkpoint seri 42.4 26 0.0009 29.8 4.4 38 90-127 99-136 (152)
271 3txn_A 26S proteasome regulato 40.4 2.9E+02 0.01 27.6 21.7 27 155-181 20-46 (394)
272 2d2s_A Exocyst complex compone 39.7 1.8E+02 0.0063 26.6 10.1 92 159-253 23-118 (235)
273 2wvi_A Mitotic checkpoint seri 39.5 37 0.0013 29.3 4.9 39 90-128 94-132 (164)
274 1y8m_A FIS1; mitochondria, unk 37.1 1.8E+02 0.0063 24.3 12.5 22 338-359 84-105 (144)
275 2r9g_A AAA ATPase, central reg 35.8 2.2E+02 0.0076 25.3 9.3 32 239-271 27-58 (204)
276 1k1a_A B-cell lymphoma 3-encod 35.6 33 0.0011 31.2 4.5 25 198-222 13-37 (241)
277 3qd7_X Uncharacterized protein 33.2 1.4E+02 0.0049 24.7 7.4 61 534-608 48-108 (137)
278 4aez_C MAD3, mitotic spindle c 32.8 1E+02 0.0035 28.0 6.9 33 93-125 151-183 (223)
279 3bge_A Predicted ATPase; struc 30.3 2.3E+02 0.0079 25.1 8.4 40 232-271 10-52 (201)
280 2nsz_A Programmed cell death p 30.2 1.7E+02 0.0057 23.9 7.4 25 229-253 10-34 (129)
281 3txn_A 26S proteasome regulato 29.6 4.3E+02 0.015 26.3 26.3 167 231-403 104-291 (394)
282 2ion_A PDCD4, programmed cell 28.9 2.6E+02 0.0089 23.5 9.2 71 333-404 11-83 (152)
283 3lpz_A GET4 (YOR164C homolog); 28.1 4.2E+02 0.015 25.7 18.7 147 227-393 36-194 (336)
284 2p1h_A APAF-1, apoptotic prote 27.7 2E+02 0.0067 21.7 7.3 63 44-111 24-86 (94)
285 3ctd_A Putative ATPase, AAA fa 26.7 2.8E+02 0.0097 24.8 8.5 40 232-271 38-80 (213)
286 3ygs_P Procaspase 9; apoptosis 26.5 1.5E+02 0.005 22.8 6.0 65 46-113 25-89 (97)
287 3kae_A CDC27, possible protein 26.3 2.6E+02 0.0087 24.3 7.7 29 92-120 114-142 (242)
288 4fke_A Aminopeptidase N; zinc 25.2 5.9E+02 0.02 28.7 13.2 142 265-413 690-843 (909)
289 2ion_A PDCD4, programmed cell 25.2 1.3E+02 0.0045 25.4 6.0 62 229-291 12-75 (152)
290 2fe3_A Peroxide operon regulat 25.1 2.5E+02 0.0086 23.2 7.8 60 216-276 12-71 (145)
291 2d2s_A Exocyst complex compone 24.2 3.7E+02 0.013 24.6 9.3 29 295-323 90-118 (235)
292 1wdy_A 2-5A-dependent ribonucl 24.1 66 0.0023 29.9 4.4 188 159-366 7-214 (285)
293 4fke_A Aminopeptidase N; zinc 23.6 8.2E+02 0.028 27.5 16.4 92 158-254 690-786 (909)
294 2nsz_A Programmed cell death p 23.4 3E+02 0.01 22.3 10.5 69 334-403 10-80 (129)
295 4a1g_A Mitotic checkpoint seri 23.4 3.4E+02 0.012 22.9 10.0 50 210-259 84-134 (152)
296 1k1a_A B-cell lymphoma 3-encod 23.3 1E+02 0.0036 27.6 5.6 85 161-251 13-101 (241)
297 2zu6_B Programmed cell death p 22.7 2.5E+02 0.0084 27.0 8.1 220 158-383 7-254 (307)
298 2xig_A Ferric uptake regulatio 21.6 2.5E+02 0.0087 23.4 7.2 60 216-276 17-76 (150)
299 1mzb_A Ferric uptake regulatio 20.6 2.5E+02 0.0085 22.9 6.8 59 217-276 9-68 (136)
300 1qsa_A Protein (soluble lytic 20.6 7.9E+02 0.027 26.2 34.1 278 26-324 38-347 (618)
301 2keb_A DNA polymerase subunit 20.3 2.6E+02 0.009 21.5 5.9 60 348-407 26-88 (101)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.3e-31 Score=293.47 Aligned_cols=427 Identities=11% Similarity=0.011 Sum_probs=323.7
Q ss_pred hhHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC--CCCCHHHHHHHHH
Q 005905 27 EQLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV--PNPTLSTFNMLMS 100 (670)
Q Consensus 27 ~~~~~~~~l~----~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~y~~li~ 100 (670)
+....|+.++ +.|++++|+.+|++|.... |... ....++..+...|++++|+.+|+.+ .+++..+++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPN-DAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHH-HHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCch-HHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHH
Confidence 4555666555 6899999999999998655 5443 3445788888899999999999988 4678889999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCCHHHHHh------cCCC-CHHH--
Q 005905 101 VCASSKDSEGAFQVLRLVQEA---------------GLKADCKLYTTLITTCAKSGKVDAMFE------NVKP-DRVV-- 156 (670)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~---------------g~~pd~~~~~~li~~~~~~g~~~~~~~------~~~~-~~~~-- 156 (670)
+|.+.|++++|+.+|+++... |.+++..+|+.++.+|.+.|+++++.+ ...| +...
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 999999999999999853211 223457889999999999999887554 1123 2333
Q ss_pred ------------------------------------HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHH
Q 005905 157 ------------------------------------FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKA 200 (670)
Q Consensus 157 ------------------------------------~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~ 200 (670)
|+.++..|.+.|++++|.++|+++... .++..++..++.+
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL----EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG----GGCHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC----CchHHHHHHHHHH
Confidence 333355677788899999999888753 5788899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005905 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280 (670)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 280 (670)
|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|..+|+++.+.. +.+..++..++.+|.+.|++++|
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999988766 4567788999999999999999999999988654 34788888899999999999999
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005905 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360 (670)
Q Consensus 281 ~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 360 (670)
.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|++|.+.
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999888754 4567889999999999999999999999888765 347888999999999999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhhHHHHHHhHHHhhhhcCCCcc
Q 005905 361 GLCPNTITYSILLVACERKDDVEVGLMLLSQAKED----GVIPN--LVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQ 434 (670)
Q Consensus 361 g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~ 434 (670)
. +.+..+|..+...|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+ .++
T Consensus 471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~----~g~-------------- 531 (597)
T 2xpi_A 471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK----LKM-------------- 531 (597)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH----TTC--------------
T ss_pred C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH----hcC--------------
Confidence 2 446888999999999999999999999888775 66787 7788888888765 111
Q ss_pred chhhhHHHHHHHHHHHHHcCCCC-cHHHHHHHHhhcc-CCCchhHHHHHHHhcCCCcc
Q 005905 435 IENKWTSLALMVYREAIVAGTIP-TVEVVSKVLGCLQ-LPYNADIRERLVENLGVSAD 490 (670)
Q Consensus 435 ~~~~~~~~A~~~~~~m~~~~~~P-~~~~~~~ll~~~~-~~~~~~~~~~~~~~~~~~~~ 490 (670)
..+|+..|+++++.+ | +..++..+..++. .+...+..+.+.+.+.+.|+
T Consensus 532 -----~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 532 -----YDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp -----HHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----HHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 224555666666543 4 3444444443333 33334444444445545553
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-29 Score=282.86 Aligned_cols=372 Identities=7% Similarity=-0.060 Sum_probs=318.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCC-------------------
Q 005905 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNP------------------- 90 (670)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------- 90 (670)
.....+.+.|++++|+.+|+++... |.+......++..+.+.|++++|+++|+.+.+.
T Consensus 122 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (597)
T 2xpi_A 122 WLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL 198 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccch
Confidence 3344555899999999999998654 445556667888999999999999999954333
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------------------------------------
Q 005905 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTL------------------------------------- 133 (670)
Q Consensus 91 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l------------------------------------- 133 (670)
+..+|+.++.+|.+.|++++|+.+|++|.+.+. .+...+..+
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 277 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML 277 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHH
Confidence 488999999999999999999999999998752 233343333
Q ss_pred -HHHHHhcCCHHHHHh---c-C--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCC
Q 005905 134 -ITTCAKSGKVDAMFE---N-V--KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQ 206 (670)
Q Consensus 134 -i~~~~~~g~~~~~~~---~-~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~ 206 (670)
+.+|.+.|+++++.+ . . .++..+|+.++.+|.+.|++++|+++|+++...+ +.+..++..++.+|.+.|+
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTC
T ss_pred HHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCC
Confidence 445556677766543 2 2 4899999999999999999999999999998752 3467789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005905 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286 (670)
Q Consensus 207 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~ 286 (670)
+++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|..++.+|.+.|++++|.++|++
T Consensus 355 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 355 KNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998765 678899999999999999999999999999886543 788999999999999999999999999
Q ss_pred HHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CC
Q 005905 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL----GL 362 (670)
Q Consensus 287 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~ 362 (670)
+.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|+++|+++.+. +.
T Consensus 433 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 433 AARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 99876 5678999999999999999999999999998765 348999999999999999999999999999875 77
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 363 CPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 363 ~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
.|+ ..+|..+..+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLH 562 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 888 7899999999999999999999999998865 3478888888888654
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.9e-30 Score=279.61 Aligned_cols=204 Identities=15% Similarity=0.240 Sum_probs=141.5
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hHH
Q 005905 210 AREVYKMIHKYNIKGTP-EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK---------VEA 279 (670)
Q Consensus 210 A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~---------~~~ 279 (670)
+..+.+++.+.+....+ .+++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555555554443 34666777777777777777777777777777777777777777765543 567
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 280 A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 360 LGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 360 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777776653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.6e-30 Score=276.60 Aligned_cols=208 Identities=17% Similarity=0.260 Sum_probs=180.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------
Q 005905 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD--------- 241 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--------- 241 (670)
..+..+.+++.+.+....| ...++.+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~sp-e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSP-EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CH-HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 3445556666655322223 346788899999999999999999999999999999999999999987664
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 242 WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005905 322 MKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERK 379 (670)
Q Consensus 322 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 379 (670)
|.+.|+.||..||++||.+|++.|+.++|.++|++|++.|..|+..||+.++..|+..
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999988754
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=1.9e-23 Score=219.72 Aligned_cols=352 Identities=12% Similarity=0.061 Sum_probs=307.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC---CCCCHHHHHHHHHHHHcCCCHH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~y~~li~~~~~~g~~~ 109 (670)
..+.+.|++++|++.|+++.+.. |.+......+...+...|++++|..+++.. .+.+..+|..+..++.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 34568999999999999999887 777777777888889999999999998764 3567889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005905 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NVKP-DRVVFNALITACGQSGAVDRAFDVLAEMNA 182 (670)
Q Consensus 110 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 182 (670)
+|+..|+++.+.. +.+..+|..+..++.+.|+++++.+ ...| +...+..+...|...|++++|.++|+++..
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999863 3456689999999999999887654 2234 566788888999999999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262 (670)
Q Consensus 183 ~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 262 (670)
.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++..+.... +..
T Consensus 164 ~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 164 TQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred hC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 52 3347889999999999999999999999999876 567889999999999999999999999999887543 678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 263 FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342 (670)
Q Consensus 263 t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 342 (670)
++..+..+|...|++++|.+.++.+.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+..+|+.+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 89999999999999999999999999875 4567889999999999999999999999998765 458899999999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 343 DGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 343 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
+.|++++|++.|+++.+. .+.+..++..+..++.+.|++++|...|+++.+.
T Consensus 317 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999875 2446788999999999999999999999999874
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=6.3e-21 Score=200.44 Aligned_cols=340 Identities=14% Similarity=0.058 Sum_probs=289.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcC
Q 005905 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASS 105 (670)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~ 105 (670)
...-..+.+.|++++|...++...+.. |.+...+..+...+...|++++|+..|+.+. +.+..+|..+..++.+.
T Consensus 37 ~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 114 (388)
T 1w3b_A 37 LLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 114 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHc
Confidence 333344458999999999999999876 7777777778999999999999999998763 45677899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh-------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------NVKPDRVVFNALITACGQSGAVDRAFDVLA 178 (670)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 178 (670)
|++++|...|+++.+.. +.+...+..+...|...|+++++.+ ..+.+..+|+.+...|.+.|++++|+..|+
T Consensus 115 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp SCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999874 3345667888889999999987654 234468899999999999999999999999
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005905 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258 (670)
Q Consensus 179 ~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 258 (670)
++.... +.+...|..+...+...|++++|...|++..+.. +.+..++..+..+|.+.|++++|...|+++.+.+..
T Consensus 194 ~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 194 KAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 998752 3346778889999999999999999999998875 567889999999999999999999999999987643
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338 (670)
Q Consensus 259 p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 338 (670)
+..++..+..++.+.|++++|.+.++++.+.. +.+..+++.+...|.+.|++++|...|+++.+.. +.+..+|..+.
T Consensus 270 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 346 (388)
T 1w3b_A 270 -FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLA 346 (388)
T ss_dssp -CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 67789999999999999999999999999875 6778999999999999999999999999998764 34688999999
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 005905 339 TALCDGDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKD 380 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 380 (670)
..|.+.|++++|++.|+++.+. .|+ ...|..+...+...|
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 9999999999999999999874 554 555655555554443
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=1.1e-18 Score=186.80 Aligned_cols=316 Identities=12% Similarity=0.023 Sum_probs=248.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCC
Q 005905 30 HSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSK 106 (670)
Q Consensus 30 ~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g 106 (670)
..-..+.+.|++++|+.+|+++.+.. |.+...+..+...+...|++++|+..|+.+. +.+..+|..+..++.+.|
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 33344558899999999999988775 6666666667788888889999998888653 456778888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005905 107 DSEGAFQVLRLVQEAGLKAD-C---KLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNA 182 (670)
Q Consensus 107 ~~~~A~~~~~~m~~~g~~pd-~---~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 182 (670)
++++|...|+++.+.. |+ . ..+..+...+... .+..+...|.+.|++++|+.+|+++..
T Consensus 109 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~---------------~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ---------------RLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp CHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999888753 44 3 5566665554322 344556678899999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 183 EVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262 (670)
Q Consensus 183 ~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 262 (670)
. .+.+...+..+..+|.+.|++++|.+.|+.+.+.. +.+..+|..+..+|...|++++|...|+++.+.... +..
T Consensus 172 ~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~ 246 (450)
T 2y4t_A 172 V---CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKR 246 (450)
T ss_dssp H---CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred h---CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHH
Confidence 5 24467888999999999999999999999998865 567899999999999999999999999999876433 444
Q ss_pred HHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005905 263 FLSAL------------IDFAGHAGKVEAAFEILQEAKNQGISVG----IISYSSLMGACSNAKNWQKALELYEHMKSIK 326 (670)
Q Consensus 263 t~~~l------------i~~~~~~g~~~~A~~i~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 326 (670)
.+..+ ...|.+.|++++|...++.+.+.... + ..++..+..+|.+.|++++|...++++.+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44444 77888899999999999998875422 2 4478888899999999999999999887654
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 005905 327 LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT-ITYSILL 373 (670)
Q Consensus 327 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 373 (670)
+.+...|..+..+|...|++++|...|+++.+ +.|+. ..+..+.
T Consensus 326 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 326 -PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34788899999999999999999999999887 35653 4444443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=3.6e-18 Score=182.93 Aligned_cols=298 Identities=12% Similarity=0.061 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh-------cCCCCHHHHHHHHHHH
Q 005905 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------NVKPDRVVFNALITAC 164 (670)
Q Consensus 92 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~-------~~~~~~~~~~~li~~~ 164 (670)
...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..+|...|+++++.+ .-+.+..+|..+...|
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3444555555555555555555555555432 2344455555555555555544332 1233567788888999
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005905 165 GQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGAL------------MKACANAGQVDRAREVYKMIHKYNIKGTPEV 228 (670)
Q Consensus 165 ~~~g~~~~A~~l~~~m~~~~~~~~pd~----~t~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 228 (670)
.+.|++++|...|+++... .|+. ..+..+ ...+...|++++|...|+.+.+.. +.+..+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHcCCHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 9999999999999999874 4553 445444 444889999999999999998875 668899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHH------
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL------ 302 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~l------ 302 (670)
+..+..+|.+.|++++|..+|+++.+... .+..++..+..+|...|++++|...++.+.+.. +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 99999999999999999999999987654 378899999999999999999999999998764 3345555554
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 005905 303 ------MGACSNAKNWQKALELYEHMKSIKLKPT-----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371 (670)
Q Consensus 303 ------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 371 (670)
...|.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|+..++++.+.. +.+...|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 889999999999999999998753 44 4578899999999999999999999988742 346889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 372 LLVACERKDDVEVGLMLLSQAKEDGVIPNLV 402 (670)
Q Consensus 372 ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 402 (670)
+..+|...|++++|...|+++.+. .|+..
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 363 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEH--NENDQ 363 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--SSSCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh--CcchH
Confidence 999999999999999999999884 46543
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.4e-19 Score=192.02 Aligned_cols=374 Identities=11% Similarity=-0.020 Sum_probs=289.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC---CCCCHHHHHHHHHHHHcC
Q 005905 29 LHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV---PNPTLSTFNMLMSVCASS 105 (670)
Q Consensus 29 ~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~y~~li~~~~~~ 105 (670)
...-+.+.+.|++++|+..|+++...+ | +...+..+...+...|++++|+..|+.+ .+.+..+|..+..++...
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 334456668999999999999999987 5 4556666888889999999999999865 345678999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcC-----------------------------------
Q 005905 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV----------------------------------- 150 (670)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~----------------------------------- 150 (670)
|++++|...|+++...+ +++......++..+.+......+.+.+
T Consensus 87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 99999999999999875 334444444444443322111111100
Q ss_pred -----------------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhh-----C--CCCC----CCCHHHHHHHHH
Q 005905 151 -----------------KPDRVVFNALITACGQ---SGAVDRAFDVLAEMNA-----E--VHPV----DPDHITIGALMK 199 (670)
Q Consensus 151 -----------------~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~--~~~~----~pd~~t~~~li~ 199 (670)
+.+...+..+...+.. .|++++|+.+|+++.. . .... +.+..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 1124445555555554 8999999999999886 2 1000 123456778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005905 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279 (670)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 279 (670)
.+...|++++|...|+.+.+.... ..++..+..+|...|++++|...|+++.+.... +...+..+...|...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999887633 889999999999999999999999999887543 66788899999999999999
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 280 A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
|...++.+.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...|..+...|...|++++|+..|+++..
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999876 4467788999999999999999999999988764 33678899999999999999999999999876
Q ss_pred CC-CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 360 LG-LCPN----TITYSILLVACER---KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS 412 (670)
Q Consensus 360 ~g-~~p~----~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (670)
.. -.|+ ...+..+..++.. .|++++|...|+.+.+.. +.+...+..+..++.
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 460 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKL 460 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 31 1122 3478888889999 999999999999998754 234555555555544
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=2.7e-17 Score=180.29 Aligned_cols=383 Identities=10% Similarity=0.011 Sum_probs=275.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCH
Q 005905 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDS 108 (670)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~ 108 (670)
-+.+.+.|++++|++.|+++.+.. |.+...+..+...+...|++++|++.|+... +.+..+|..+..++...|++
T Consensus 32 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 32 GNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCH
Confidence 345558999999999999999987 7777888888889999999999999998763 55788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHH--HH---------------------------------HHHHHHHhcCCHHHHHhcC---
Q 005905 109 EGAFQVLRLVQEAGLKADCKL--YT---------------------------------TLITTCAKSGKVDAMFENV--- 150 (670)
Q Consensus 109 ~~A~~~~~~m~~~g~~pd~~~--~~---------------------------------~li~~~~~~g~~~~~~~~~--- 150 (670)
++|+..|+.+ .. .|+... .. ..+..+....+.+......
T Consensus 110 ~~A~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 110 TDAMFDLSVL-SL--NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp HHHHHHHHHH-C-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred HHHHHHHHHH-hc--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 9999999633 22 222111 11 1111122222222222211
Q ss_pred ---CCCHH-HHHHHHHHHHh--------cCCHHHHHHHHHHHhhCCCCCCCC--------HHHHHHHHHHHHHcCCHHHH
Q 005905 151 ---KPDRV-VFNALITACGQ--------SGAVDRAFDVLAEMNAEVHPVDPD--------HITIGALMKACANAGQVDRA 210 (670)
Q Consensus 151 ---~~~~~-~~~~li~~~~~--------~g~~~~A~~l~~~m~~~~~~~~pd--------~~t~~~li~~~~~~g~~~~A 210 (670)
.+... ....+...+.. .|++++|+.+|+++... .|+ ..++..+...+...|++++|
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA----NTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH----CCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 11111 22233333222 24788999999998864 444 23566777788889999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005905 211 REVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 211 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~ 290 (670)
...|+.+.+.. |+..+|..+...|...|++++|...|+++.+.... +..++..+...+...|++++|...++.+.+.
T Consensus 263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 99999988864 44788888999999999999999999998877643 6778888999999999999999999998886
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC-----CCCCC
Q 005905 291 GISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL-----GLCPN 365 (670)
Q Consensus 291 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~ 365 (670)
. +.+..++..+...|...|++++|...|+++.+.. +.+...|..+...|...|++++|++.|+++.+. .....
T Consensus 340 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 340 N-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp C-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 5 4456788889999999999999999999888765 346778888999999999999999999987652 12223
Q ss_pred HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhHHHhhhhc
Q 005905 366 TITYSILLVACERK----------DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFN 429 (670)
Q Consensus 366 ~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~ 429 (670)
...+.....++... |++++|..+|+++.+.. +.+...+..+..++.+ ++++|....+......
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 33455555667777 99999999999888753 2345666667666665 6777776665544444
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=9.2e-17 Score=174.88 Aligned_cols=369 Identities=9% Similarity=-0.010 Sum_probs=273.3
Q ss_pred CchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHH
Q 005905 24 DVSEQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMS 100 (670)
Q Consensus 24 ~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~ 100 (670)
+.......-..+.+.|++++|++.|+++.+.+ |.+...+..+...+...|++++|+..|+.+. +++......++.
T Consensus 38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 115 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115 (514)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHH
T ss_pred cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 33444444556668999999999999999987 7777777778899999999999999998652 223222222322
Q ss_pred HHHcCCCHHHHHHHHHHHHH-----------------------------------cCC---------CCCHHHHHHHHHH
Q 005905 101 VCASSKDSEGAFQVLRLVQE-----------------------------------AGL---------KADCKLYTTLITT 136 (670)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~-----------------------------------~g~---------~pd~~~~~~li~~ 136 (670)
.+........+.+.+..+.. ... +.+...+..+...
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (514)
T 2gw1_A 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLS 195 (514)
T ss_dssp HHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHH
Confidence 22221111111111110000 000 0112333333333
Q ss_pred HHh---cCCHHHHHh------c-----C----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHH
Q 005905 137 CAK---SGKVDAMFE------N-----V----------KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI 192 (670)
Q Consensus 137 ~~~---~g~~~~~~~------~-----~----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~ 192 (670)
+.. .|+++++.+ . . +.+..+|..+...|...|++++|..+|+++... .|+..
T Consensus 196 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~ 271 (514)
T 2gw1_A 196 NLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL----FPRVN 271 (514)
T ss_dssp HHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH----CCCHH
T ss_pred HHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CccHH
Confidence 332 555554332 1 2 224567888899999999999999999999875 45577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
.+..+...+...|++++|...|+.+.+.. +.+..+|..+...|...|++++|...|++..+.... +...+..+...|.
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAY 349 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHH
Confidence 88889999999999999999999998865 556789999999999999999999999999987654 6678888999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---C
Q 005905 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK-PT----VSTMNALITALCD---G 344 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~---~ 344 (670)
..|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|+++.+.... ++ ...|..+...|.. .
T Consensus 350 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 428 (514)
T 2gw1_A 350 RENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428 (514)
T ss_dssp TTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT
T ss_pred HcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999999998764 445678899999999999999999999988754211 12 4488999999999 9
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 345 DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404 (670)
Q Consensus 345 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 404 (670)
|++++|...|+++.... +.+..++..+..++.+.|++++|...|+++.+.. |+....
T Consensus 429 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~ 485 (514)
T 2gw1_A 429 ENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA--RTMEEK 485 (514)
T ss_dssp THHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccHHH
Confidence 99999999999998752 3467788889999999999999999999998854 554433
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=1.9e-15 Score=155.89 Aligned_cols=307 Identities=11% Similarity=0.026 Sum_probs=207.4
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHH
Q 005905 27 EQLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCA 103 (670)
Q Consensus 27 ~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~ 103 (670)
.....-+.+.+.|++++|+..|+++.+.. |.+...+..+...+...|++++|+..|+... +.+...|..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 33444556678999999999999999877 6777777778888889999999999998753 446788999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 104 SSKDSEGAFQVLRLVQEAGLKA----DCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAE 179 (670)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~p----d~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 179 (670)
..|++++|...|+++.+. .| +...+..+...+. ...+..+...+...|++++|+.+|++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE---------------MQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH---------------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999875 35 2333333322211 12344566788899999999999999
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005905 180 MNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259 (670)
Q Consensus 180 m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 259 (670)
+... .+.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+....
T Consensus 146 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~- 220 (359)
T 3ieg_A 146 ILEV---CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD- 220 (359)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHh---CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-
Confidence 8875 23456778888889999999999999999988865 667888999999999999999999999998876433
Q ss_pred CHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCccH----HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 260 DEVFLSAL------------IDFAGHAGKVEAAFEILQEAKNQGISVGI----ISYSSLMGACSNAKNWQKALELYEHMK 323 (670)
Q Consensus 260 ~~~t~~~l------------i~~~~~~g~~~~A~~i~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (670)
+...+..+ ...+.+.|++++|...++.+.+.... +. ..+..+..+|.+.|++++|...|++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 299 (359)
T 3ieg_A 221 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33322211 33344455555555555554443211 11 122334444445555555555555444
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 324 SIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 324 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+.. +.+..+|..+...|...|++++|.+.|++..+
T Consensus 300 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 300 QME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 432 12344444444455555555555555554444
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=3e-15 Score=154.39 Aligned_cols=303 Identities=11% Similarity=0.037 Sum_probs=225.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh-------cCCCCHHHHHHHHHHHHh
Q 005905 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE-------NVKPDRVVFNALITACGQ 166 (670)
Q Consensus 94 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~-------~~~~~~~~~~~li~~~~~ 166 (670)
.+..+...+...|++++|+..|+++++.. +.+..++..+..++...|+++++.+ ..+.+...|..+...|..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 44444555555555555555555555442 2234455555555555555544332 122356678888888999
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCC---C-HHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005905 167 SGAVDRAFDVLAEMNAEVHPVDP---D-HITIGAL------------MKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230 (670)
Q Consensus 167 ~g~~~~A~~l~~~m~~~~~~~~p---d-~~t~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 230 (670)
.|++++|...|++.... .| + ...+..+ ...+...|++++|.+.|+.+.+.. +.+..++.
T Consensus 84 ~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKS----NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cCChHHHHHHHHHHHhc----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 99999999999999864 45 3 3334333 477889999999999999998876 66788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHH----------
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYS---------- 300 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~---------- 300 (670)
.+...|...|++++|...++++.+... .+..++..+...+...|++++|...++...+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 999999999999999999999998754 378899999999999999999999999998765 33333332
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005905 301 --SLMGACSNAKNWQKALELYEHMKSIKLKPTV----STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374 (670)
Q Consensus 301 --~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 374 (670)
.+...+.+.|++++|...|+++.+.... +. ..+..+...|...|++++|+..|++..+. .+.+..++..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHH
Confidence 3366789999999999999998876422 33 23556778999999999999999999885 2347788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 005905 375 ACERKDDVEVGLMLLSQAKEDGVIPNL-VMFKCII 408 (670)
Q Consensus 375 a~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li 408 (670)
++...|++++|...|+++.+.. |+. .....+.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~l~ 347 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHN--ENDQQIREGLE 347 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChHHHHHHH
Confidence 9999999999999999998754 553 3333333
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.77 E-value=1.9e-15 Score=165.53 Aligned_cols=325 Identities=12% Similarity=0.035 Sum_probs=249.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005905 64 HARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKS 140 (670)
Q Consensus 64 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 140 (670)
+......+...|++++|+..|+.+. +.+..+|..+..++.+.|++++|+..|+++++.. +.+..++..+..++...
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc
Confidence 3446667788899999999998763 4678899999999999999999999999999875 45788899999999999
Q ss_pred CCHHHHHh---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---------------------------------
Q 005905 141 GKVDAMFE---NVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV--------------------------------- 184 (670)
Q Consensus 141 g~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~--------------------------------- 184 (670)
|+++++.+ .+..+....+..+..+...+...+|...++++....
T Consensus 107 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp TCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 99998755 222222233344555666666778888888875420
Q ss_pred CCCCCCHH-HHHHHHHHH--------HHcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 005905 185 HPVDPDHI-TIGALMKAC--------ANAGQVDRAREVYKMIHKYNIKGTPE-------VYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 185 ~~~~pd~~-t~~~li~~~--------~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~l 248 (670)
....+... ....+...+ ...|++++|..+|+.+.+.. +.+.. ++..+...+...|++++|...
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~ 265 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVL 265 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 00111111 222333222 22368999999999998865 33433 567777888999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 328 (670)
|++..+.. |+...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|+++.+.. +
T Consensus 266 ~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 341 (537)
T 3fp2_A 266 LQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-P 341 (537)
T ss_dssp HHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-C
Confidence 99999874 557888899999999999999999999998875 5568889999999999999999999999998765 3
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
.+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 367889999999999999999999999998852 445678888899999999999999999998763
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.74 E-value=6.1e-18 Score=186.86 Aligned_cols=118 Identities=17% Similarity=0.196 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHMKS---IKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSIL 372 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 372 (670)
..+||+||++||++|++++|.++|++|.+ .|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45566666666666666666666655542 245566666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 373 LVACERKDD-VEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 373 l~a~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
|.++++.|+ .++|.++|++|.+.|+.||..+|+|++..+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 666666555 34555666666666666666666666555443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=3.4e-15 Score=152.14 Aligned_cols=207 Identities=14% Similarity=0.029 Sum_probs=93.7
Q ss_pred HHHHhcC-CHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 005905 162 TACGQSG-AVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG 240 (670)
Q Consensus 162 ~~~~~~g-~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 240 (670)
..|...| ++++|...|++..... +.+...|..+...+...|++++|.+.|+.+.+.. +.+..++..+...|...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 3333444 4444444444444321 1123334444444444444444444444444432 222333444444444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--------CCccHHHHHHHHHHHHhcCCH
Q 005905 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG--------ISVGIISYSSLMGACSNAKNW 312 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~--------~~~~~~~~~~li~~~~~~g~~ 312 (670)
++++|...|++..+.... +...+..+...+...|++++|...++++.+.. .+....++..+...|.+.|++
T Consensus 174 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 444444444444443321 33444444444444455555544444443321 022234555555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 005905 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-NTITYSILLVAC 376 (670)
Q Consensus 313 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 376 (670)
++|...|++..+.. +.+...|..+...|...|++++|.+.|++..+. .| +...+..+..++
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHH
Confidence 55555555554433 224455555555555555555555555555442 23 334444444444
No 17
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=4.7e-18 Score=187.74 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHH
Q 005905 226 PEVYTIAINCCSQTGDWEFACSVYDDMT---KKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSL 302 (670)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~l 302 (670)
..+||+||++||+.|++++|.++|++|. +.|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||++|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3567777777777777777777776664 3467777777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 005905 303 MGACSNAKN-WQKALELYEHMKSIKLKPTVSTMNALITALCD 343 (670)
Q Consensus 303 i~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 343 (670)
|.++|+.|+ .++|.++|++|.+.|+.||.++|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 777777776 46677777777777777777777777765544
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.72 E-value=6.4e-15 Score=150.10 Aligned_cols=286 Identities=10% Similarity=-0.019 Sum_probs=227.7
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 005905 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGA 169 (670)
Q Consensus 90 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~ 169 (670)
.+...+..+...+...|++++|+.+|+++.+.. |+ +...+..++..+...|+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~--------------------------~~~~~~~~~~~~~~~~~ 71 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PF--------------------------HASCLPVHIGTLVELNK 71 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------------CTTTHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC--------------------------ChhhHHHHHHHHHHhhh
Confidence 344456677788888899999999999888753 21 22234445566778888
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
+++|..+|+++.... +.+...+..+...+...| ++++|.+.|+.+.+.. +.+..+|..+...|...|++++|...
T Consensus 72 ~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 147 (330)
T 3hym_B 72 ANELFYLSHKLVDLY---PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAA 147 (330)
T ss_dssp HHHHHHHHHHHHHHC---TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999988752 335677888889999999 9999999999998865 55678899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-- 326 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 326 (670)
|++..+.... +...+..+...|...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+..
T Consensus 148 ~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 148 YFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp HHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 9999887544 45667778889999999999999999998875 5567889999999999999999999999887531
Q ss_pred ------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005905 327 ------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPN 400 (670)
Q Consensus 327 ------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~ 400 (670)
...+..+|..+...|...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|+++.+.. +.+
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 303 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDD 303 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCC
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCc
Confidence 13346789999999999999999999999988752 3456788888899999999999999999877643 224
Q ss_pred HHHHHHHHHHH
Q 005905 401 LVMFKCIIGMC 411 (670)
Q Consensus 401 ~~~~~~li~~~ 411 (670)
...+..+...+
T Consensus 304 ~~~~~~l~~~~ 314 (330)
T 3hym_B 304 TFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 55555555555
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=3.6e-15 Score=154.76 Aligned_cols=307 Identities=10% Similarity=0.014 Sum_probs=168.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHH-HhhhCC---C--C--CHHHHHHHHHHHHcCCCHHH
Q 005905 39 GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFR-FFKLVP---N--P--TLSTFNMLMSVCASSKDSEG 110 (670)
Q Consensus 39 g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~---~--~--~~~~y~~li~~~~~~g~~~~ 110 (670)
..++.+...++.+.+.+ |. .+...+++++|+. .|+... + | +...+..+...+...|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRD--AE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHcCC--ch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 44555556666665554 21 1122467888887 776432 1 1 34567788889999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC
Q 005905 111 AFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD 190 (670)
Q Consensus 111 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd 190 (670)
|+..|+++++.. +.+..++. .+...|.+.|++++|+..|+++.... +.+
T Consensus 83 A~~~~~~al~~~-p~~~~~~~---------------------------~l~~~~~~~g~~~~A~~~~~~al~~~---~~~ 131 (368)
T 1fch_A 83 AVLLFEAAVQQD-PKHMEAWQ---------------------------YLGTTQAENEQELLAISALRRCLELK---PDN 131 (368)
T ss_dssp HHHHHHHHHHSC-TTCHHHHH---------------------------HHHHHHHHTTCHHHHHHHHHHHHHHC---TTC
T ss_pred HHHHHHHHHHhC-CCCHHHHH---------------------------HHHHHHHHCcCHHHHHHHHHHHHhcC---CCC
Confidence 999999998863 22334444 44445555555555666665555431 224
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI---------------AINCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 191 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~---------------li~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
..++..+...+...|++++|.+.|+.+.+.. +.+...+.. .+..+...|++++|...|+++.+.
T Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 132 QTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 4555555556666666666666666555543 111111111 122333667777777777776665
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 005905 256 GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTM 334 (670)
Q Consensus 256 g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 334 (670)
.... +..++..+...|...|++++|...++++.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+..+|
T Consensus 211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 288 (368)
T 1fch_A 211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSR 288 (368)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 3321 45666667777777777777777777766653 3445667777777777777777777777766543 2356667
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCC---C-------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 335 NALITALCDGDQLPKTMEVLSDMKSLGL---C-------PNTITYSILLVACERKDDVEVGLMLLSQ 391 (670)
Q Consensus 335 ~~li~~~~~~g~~~~A~~l~~~m~~~g~---~-------p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 391 (670)
..+...|.+.|++++|...|++..+... . ....+|..+..++...|+.++|..++.+
T Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 289 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 7777777777777777777777655210 0 0146677777777777777777776653
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=2.9e-15 Score=155.56 Aligned_cols=268 Identities=13% Similarity=0.016 Sum_probs=198.2
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCH
Q 005905 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAV 170 (670)
Q Consensus 91 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 170 (670)
+...|..+...+.+.|++++|+..|+++++.. |+ +..+|..+...|.+.|++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~--------------------------~~~~~~~lg~~~~~~g~~ 115 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PG--------------------------DAEAWQFLGITQAENENE 115 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT--------------------------CHHHHHHHHHHHHHTTCH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cC--------------------------CHHHHHHHHHHHHHCCCH
Confidence 45568888899999999999999999988753 22 344567777778888888
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHhcCC
Q 005905 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK---------GTPEVYTIAINCCSQTGD 241 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---------~~~~~~~~li~~~~~~g~ 241 (670)
++|+..|+++.... +.+..++..+...|...|++++|...|+++.+.... ....++..+...|.+.|+
T Consensus 116 ~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 192 (365)
T 4eqf_A 116 QAAIVALQRCLELQ---PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV 192 (365)
T ss_dssp HHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHH
T ss_pred HHHHHHHHHHHhcC---CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh
Confidence 99999999887742 334778888888999999999999999888765310 012234455778888899
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 242 WEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYE 320 (670)
Q Consensus 242 ~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (670)
+++|..+|+++.+.... ++..++..+...|...|++++|.+.++++.+.. +.+..+++.+..+|.+.|++++|...|+
T Consensus 193 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 193 LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYT 271 (365)
T ss_dssp HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988876533 257788888888888899999999998888765 5567888888889999999999999998
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC---CCC--------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 321 HMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG---LCP--------NTITYSILLVACERKDDVEVGLMLL 389 (670)
Q Consensus 321 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p--------~~~t~~~ll~a~~~~g~~~~a~~~~ 389 (670)
++.+.. +.+..+|..+..+|...|++++|...|+++.+.. ..| +...|..+..++...|+.+.+..+.
T Consensus 272 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 272 RALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 887764 3357888888888889999999999988877621 011 2567778888888888888877766
Q ss_pred HH
Q 005905 390 SQ 391 (670)
Q Consensus 390 ~~ 391 (670)
.+
T Consensus 351 ~~ 352 (365)
T 4eqf_A 351 LG 352 (365)
T ss_dssp TT
T ss_pred Hh
Confidence 43
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=2.8e-15 Score=155.61 Aligned_cols=261 Identities=10% Similarity=-0.024 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...|..+...|.+.|++++|+..|+++.... +.+..++..+..++...|++++|...|+++.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~ 139 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALA 139 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4567778889999999999999999999852 4467788899999999999999999999999876 66889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhcCChHHHHHHHHHHHHCCCCc-cHH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSA---------------LIDFAGHAGKVEAAFEILQEAKNQGISV-GII 297 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---------------li~~~~~~g~~~~A~~i~~~m~~~~~~~-~~~ 297 (670)
..|...|++++|...|+++.+..... ...+.. .+..+...|++++|...++.+.+..... +..
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 218 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPD 218 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHH
Confidence 99999999999999999998875432 222211 2344448999999999999998875221 688
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 377 (670)
++..+...|.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|+..|+++.+.. +.+...+..+..+|.
T Consensus 219 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 99999999999999999999999988764 3468899999999999999999999999998742 346788899999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCC---C-------CHHHHHHHHHHHHh--hHHHHHHh
Q 005905 378 RKDDVEVGLMLLSQAKEDGVI---P-------NLVMFKCIIGMCSR--RYEKARTL 421 (670)
Q Consensus 378 ~~g~~~~a~~~~~~m~~~g~~---p-------~~~~~~~li~~~~r--~~~~a~~l 421 (670)
+.|++++|...|+++.+..-. | ....|..+..++.+ ++++|..+
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 999999999999998864211 1 15677777777654 44444443
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.66 E-value=5.7e-12 Score=136.45 Aligned_cols=332 Identities=11% Similarity=0.008 Sum_probs=265.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhh----hhhHHHHHHHhhhCC-CCCHHHHHHHHHHHHc----CCCH
Q 005905 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDS 108 (670)
Q Consensus 38 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~y~~li~~~~~----~g~~ 108 (670)
.+++++|++.|++..+.|. ......+...+.. .++.++|+++|++.. ..+...+..|...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGY----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 6899999999999988762 2233336666666 788999999998754 4467788888888888 7899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHhc-----CCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 005905 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEN-----VKPDRVVFNALITACGQ----SGAVDRAFD 175 (670)
Q Consensus 109 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~~~~~-----~~~~~~~~~~li~~~~~----~g~~~~A~~ 175 (670)
++|+..|++..+.| +...+..|..+|.. .++.+++++- -..+...+..|...|.+ .++.++|++
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 99999999988875 56777888888877 6777776541 12477888888888888 899999999
Q ss_pred HHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 005905 176 VLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACS 247 (670)
Q Consensus 176 l~~~m~~~~~~~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 247 (670)
.|++.... .+...+..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|..
T Consensus 209 ~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 209 WYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 99998774 255677777777776 789999999999888765 45677777777877 889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC---CHHHHHHHH
Q 005905 248 VYDDMTKKGVIPDEVFLSALIDFAGHA-----GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELY 319 (670)
Q Consensus 248 l~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~ 319 (670)
.|++..+.| +...+..+...|... ++.++|...++...+.+ +...+..+..+|...| ++++|.+.|
T Consensus 281 ~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~ 354 (490)
T 2xm6_A 281 WYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWF 354 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred HHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHH
Confidence 999988775 455677777778777 89999999999998876 4567777888888766 789999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 005905 320 EHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEVGLMLLSQ 391 (670)
Q Consensus 320 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~ 391 (670)
++..+. .+...+..|...|.. .+++++|++.|++..+.| +...+..+-..|.+ .++.++|..+|++
T Consensus 355 ~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 355 RKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 998875 367888888888888 789999999999988865 46677777777777 7999999999999
Q ss_pred HHHCC
Q 005905 392 AKEDG 396 (670)
Q Consensus 392 m~~~g 396 (670)
..+.+
T Consensus 429 A~~~~ 433 (490)
T 2xm6_A 429 ASTND 433 (490)
T ss_dssp HHHHH
T ss_pred HHHCC
Confidence 88876
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=2e-15 Score=155.27 Aligned_cols=287 Identities=14% Similarity=0.183 Sum_probs=136.6
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHH
Q 005905 31 SYNRLI-RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 31 ~~~~l~-~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~ 109 (670)
..+.|+ +.|++++|.+.++++.... +-..++.++.+.|++++|++.|.+. +|..+|..++.++...|+++
T Consensus 8 a~~~ll~~~~~ld~A~~fae~~~~~~-------vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 8 AVQVLIEHIGNLDRAYEFAERCNEPA-------VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHhCCChH-------HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHH
Confidence 345555 6889999999999994322 3345888899999999999999764 56679999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 005905 110 GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVD 188 (670)
Q Consensus 110 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~ 188 (670)
+|+..++...+. .+++.+.+.|+.+|.++|+++++.+-+ .|+..+|+.+...|...|++++|..+|..+
T Consensus 79 eAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 79 ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTTCC----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 999977766663 466888999999999999999976643 578889999999999999999999999976
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005905 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268 (670)
Q Consensus 189 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 268 (670)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..+..-...++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHH
Confidence 26889999999999999999999988 26799999999999999999996655542 23444466799
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHH
Q 005905 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--KNWQKALELYEHMKSIKLKP------TVSTMNALITA 340 (670)
Q Consensus 269 ~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~li~~ 340 (670)
..|.+.|.+++|..+++...... +-....|+-|.-.|++- +++.+..+.|.. ..+++| +...|..++..
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988765 55677888887778765 456666666653 122222 45579999999
Q ss_pred HHhCCChhHHHHH
Q 005905 341 LCDGDQLPKTMEV 353 (670)
Q Consensus 341 ~~~~g~~~~A~~l 353 (670)
|...++++.|...
T Consensus 292 y~~~~e~d~A~~t 304 (449)
T 1b89_A 292 YDKYEEYDNAIIT 304 (449)
T ss_dssp HHHTTCHHHHHHH
T ss_pred HHhhchHHHHHHH
Confidence 9999999998874
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.65 E-value=9.9e-15 Score=151.53 Aligned_cols=237 Identities=11% Similarity=0.011 Sum_probs=196.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
+...|..+...+.+.|++++|+.+|+++.... +.+..++..+...+...|++++|...|+++.+.. +.+..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 45568889999999999999999999998752 4467889999999999999999999999999876 5678999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-ccHHHHHHH
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKGVI---------PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS-VGIISYSSL 302 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~---------p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~-~~~~~~~~l 302 (670)
..+|...|++++|...|+++.+.... .....+..+...+...|++++|..+++++.+.... .+..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999999875321 01223445678899999999999999999887522 268899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 005905 303 MGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDV 382 (670)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 382 (670)
...|...|++++|...|++..+.. +.+..+|+.+..+|...|++++|+..|++..+.. +.+..++..+..+|.+.|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 999999999999999999998765 3478899999999999999999999999998852 33578899999999999999
Q ss_pred HHHHHHHHHHHHC
Q 005905 383 EVGLMLLSQAKED 395 (670)
Q Consensus 383 ~~a~~~~~~m~~~ 395 (670)
++|...|+++.+.
T Consensus 298 ~~A~~~~~~al~~ 310 (365)
T 4eqf_A 298 REAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=2.7e-14 Score=145.18 Aligned_cols=265 Identities=11% Similarity=0.022 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHH
Q 005905 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDR 172 (670)
Q Consensus 93 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 172 (670)
..|..+...+...|++++|..+|+++.+.. |+ +..+|..+...|.+.|++++
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~--------------------------~~~~~~~l~~~~~~~~~~~~ 73 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA--PE--------------------------REEAWRSLGLTQAENEKDGL 73 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT--------------------------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC--------------------------CHHHHHHHHHHHHHcCCHHH
Confidence 345667778888899999999998887753 22 33445556666777777788
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHH
Q 005905 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA--------------IN-CCS 237 (670)
Q Consensus 173 A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l--------------i~-~~~ 237 (670)
|...|+++.... +.+..++..+...+...|++++|.+.|+.+.+.. +.+...+..+ .. .+.
T Consensus 74 A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 74 AIIALNHARMLD---PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTT
T ss_pred HHHHHHHHHhcC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHH
Confidence 888888777641 3356677777777888888888888888777654 2222233322 22 366
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 005905 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317 (670)
Q Consensus 238 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (670)
..|++++|...++++.+.... +...+..+...|...|++++|...++.+.+.. +.+..++..+...|...|++++|..
T Consensus 150 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 778888888888888776543 67778888888888888888888888887764 4557778888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHH
Q 005905 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCP-----------NTITYSILLVACERKDDVEVGL 386 (670)
Q Consensus 318 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~ll~a~~~~g~~~~a~ 386 (670)
.|+++.+.. +.+..+|..+...|...|++++|.+.|++..+..... +..++..+..++.+.|+.++|.
T Consensus 228 ~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 228 AYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 888877654 3367788888888888888888888888877632111 3667777888888888888888
Q ss_pred HHHHHH
Q 005905 387 MLLSQA 392 (670)
Q Consensus 387 ~~~~~m 392 (670)
.++++.
T Consensus 307 ~~~~~~ 312 (327)
T 3cv0_A 307 LTYAQN 312 (327)
T ss_dssp HHTTCC
T ss_pred HHHHHH
Confidence 877543
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=5.6e-14 Score=140.83 Aligned_cols=248 Identities=13% Similarity=0.113 Sum_probs=160.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHhcC----CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 104 SSKDSEGAFQVLRLVQEAGLKADC--KLYTTLITTCAKSGKVDAMFENV----KPDRVVFNALITACGQSGAVDRAFDVL 177 (670)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~pd~--~~~~~li~~~~~~g~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~ 177 (670)
..|++..|+..++.... ..|+. .....+..+|...|+++.+...+ .|+..++..+...|...++.++|++.+
T Consensus 11 ~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 34555555554443322 12222 12233444455555554444322 234556666777777888888888888
Q ss_pred HHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 178 AEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 178 ~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
+++... +..|+ ...+..+...+...|++++|.+.++. +.+..++..+...|.+.|++++|.+.|+++.+..
T Consensus 89 ~~ll~~--~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 89 DREMSR--SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHS--CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhc--ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 887764 23354 44455566778888888888888866 4567788888888888888888888888887764
Q ss_pred CCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 005905 257 VIPDEVFL---SALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVST 333 (670)
Q Consensus 257 ~~p~~~t~---~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 333 (670)
|+.... ...+..+...|++++|..+|+++.+.. +.+..+++.+..+|.+.|++++|...|++..+.. +-+..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 333211 122333444577888888888887763 5677778888888888888888888888777654 336777
Q ss_pred HHHHHHHHHhCCChhH-HHHHHHHHHhCCCCCCHH
Q 005905 334 MNALITALCDGDQLPK-TMEVLSDMKSLGLCPNTI 367 (670)
Q Consensus 334 ~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~p~~~ 367 (670)
+..++..+...|+.++ +.++++++.+. .|+..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 7777777777887765 46777777763 45543
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=1.5e-13 Score=137.66 Aligned_cols=252 Identities=15% Similarity=0.158 Sum_probs=186.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHH
Q 005905 31 SYNRLIRQGRISECIDLLEDMERKGLLDMDK-VYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSE 109 (670)
Q Consensus 31 ~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~ 109 (670)
........|++..|+..++...... |.+. .....+.+.+...|+++.|+..++...+|+..++..+...+...++.+
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHH
Confidence 3445567899999999998765443 4442 355567788899999999999998776778888999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 005905 110 GAFQVLRLVQEAGLKA-DCKLYTTLITTCAKSGKVDAMFENV--KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHP 186 (670)
Q Consensus 110 ~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 186 (670)
+|++.++++...+..| +...+..+..++...|+++++.+.+ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---
Confidence 9999999999877555 4555666667888888888765521 456777778888888888888888888888764
Q ss_pred CCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 187 VDPDHITIGALM----KACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEV 262 (670)
Q Consensus 187 ~~pd~~t~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 262 (670)
.|+.. ...+. ..+...|++++|..+|+++.+.. +.+..+|+.+..++.+.|++++|...|++..+.... +..
T Consensus 160 -~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~~ 235 (291)
T 3mkr_A 160 -DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPE 235 (291)
T ss_dssp -CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred -CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHH
Confidence 45532 22222 23333477888888888877764 667777888888888888888888888887776543 666
Q ss_pred HHHHHHHHHHhcCChHH-HHHHHHHHHHCC
Q 005905 263 FLSALIDFAGHAGKVEA-AFEILQEAKNQG 291 (670)
Q Consensus 263 t~~~li~~~~~~g~~~~-A~~i~~~m~~~~ 291 (670)
++..++..+...|+.++ +.++++++.+..
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 77777777777777765 567777776654
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.62 E-value=1.4e-13 Score=139.88 Aligned_cols=236 Identities=10% Similarity=-0.042 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
+...|..+...+...|++++|..+|+++.... +.+...+..+...+...|++++|.+.|+.+.+.. +.+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHH
Confidence 33456677888999999999999999998752 3467788889999999999999999999998875 6678899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCccHH
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL--------------ID-FAGHAGKVEAAFEILQEAKNQGISVGII 297 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l--------------i~-~~~~~g~~~~A~~i~~~m~~~~~~~~~~ 297 (670)
...|...|++++|...|+++.+.... +...+..+ .. .+...|++++|..+++.+.+.. +.+..
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 173 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQ 173 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHH
Confidence 99999999999999999999876433 22222222 22 3677889999999999998875 45788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 377 (670)
++..+...|.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 99999999999999999999999988765 3468899999999999999999999999988752 346788889999999
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 005905 378 RKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 378 ~~g~~~~a~~~~~~m~~~g 396 (670)
..|++++|.+.|+++.+..
T Consensus 252 ~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC
Confidence 9999999999999988743
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.62 E-value=6.5e-11 Score=128.05 Aligned_cols=376 Identities=11% Similarity=-0.003 Sum_probs=283.2
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhh----hhhHHHHHHHhhhCC-CCCHHHHHHHHHHHHc----CCCHHHHHHH
Q 005905 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKS----QKAIKEAFRFFKLVP-NPTLSTFNMLMSVCAS----SKDSEGAFQV 114 (670)
Q Consensus 44 A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~y~~li~~~~~----~g~~~~A~~~ 114 (670)
+++.++...+.| +......+...+.. .+++++|+.+|+... ..+...+..|...|.. .+++++|...
T Consensus 26 ~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 455666665555 22233334555555 688999999998653 4577888889999988 8999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHhc-----CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHh
Q 005905 115 LRLVQEAGLKADCKLYTTLITTCAK----SGKVDAMFEN-----VKPDRVVFNALITACGQ----SGAVDRAFDVLAEMN 181 (670)
Q Consensus 115 ~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~~~~~-----~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~ 181 (670)
|++..+.| +...+..|..+|.. .++.+++++- -.-+...+..|...|.. .+++++|++.|++..
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 99998875 66777788888888 6788776541 12467788888888887 789999999999988
Q ss_pred hCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 005905 182 AEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMT 253 (670)
Q Consensus 182 ~~~~~~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~ 253 (670)
+. .+...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|..+|++..
T Consensus 179 ~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 179 EQ-----GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HC-----CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 74 256788888888888 899999999999988865 46788888888886 789999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHh
Q 005905 254 KKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA-----KNWQKALELYEHMKS 324 (670)
Q Consensus 254 ~~g~~p~~~t~~~li~~~~~----~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~ 324 (670)
+.| +...+..+...|.. .++.++|...|+...+.| +...+..|..+|... +++++|...|++..+
T Consensus 251 ~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 251 EQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 875 45566677777777 899999999999998775 456777888888887 899999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 005905 325 IKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCPNTITYSILLVACER----KDDVEVGLMLLSQAKEDGV 397 (670)
Q Consensus 325 ~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~g~ 397 (670)
.+ +...+..|...|...| +.++|++.|++..+.| +...+..+-..|.. .++.++|..+|++..+.|
T Consensus 325 ~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 325 QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 64 5677888888888877 7899999999998864 56777777788887 899999999999998876
Q ss_pred CCCHHHHHHHHHHHHhhHHHHHHhHHHhhhhcCCCccchhhhHHHHHHHHHHHHHcCCC-CcHHHHHHHHhh
Q 005905 398 IPNLVMFKCIIGMCSRRYEKARTLNEHVLSFNSGRPQIENKWTSLALMVYREAIVAGTI-PTVEVVSKVLGC 468 (670)
Q Consensus 398 ~p~~~~~~~li~~~~r~~~~a~~l~~a~~~~~~~~~~~~~~~~~~A~~~~~~m~~~~~~-P~~~~~~~ll~~ 468 (670)
+...+..|-.+|.+ +. ....-..+|...|++..+.+.. |+.......++.
T Consensus 398 --~~~a~~~Lg~~y~~-----------------g~--g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~ 448 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYY-----------------GL--GVERDYVQAWAWFDTASTNDMNLFGTENRNITEKK 448 (490)
T ss_dssp --CHHHHHHHHHHHHH-----------------TS--SSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHHHc-----------------CC--CCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHh
Confidence 34444444444321 00 0012234677777777776544 434433333433
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.61 E-value=3.1e-15 Score=153.91 Aligned_cols=276 Identities=11% Similarity=0.156 Sum_probs=127.0
Q ss_pred hhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhc--
Q 005905 72 KSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN-- 149 (670)
Q Consensus 72 ~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~-- 149 (670)
.+.|++++|.+++++++.|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++..+...|+++++..-
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45678999999999997664 899999999999999999999965 25777999999999999998876551
Q ss_pred ----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 005905 150 ----VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT 225 (670)
Q Consensus 150 ----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 225 (670)
..++..+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 86 ~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 86 MARKKARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -----------------------CHHHHTTTTT---------CC----------------CTTTHHHHHHHT--------
T ss_pred HHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 23456788999999999999999887773 366679999999999999999999999876
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 005905 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305 (670)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~ 305 (670)
..|..+++++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +...+.-...++..
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINY 216 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHH
Confidence 36889999999999999999999988 2778999999999999999999554443 22333445578899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC--CChhHHHHHHHHHHhCCCCC------CHHHHHHHHHHHH
Q 005905 306 CSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG--DQLPKTMEVLSDMKSLGLCP------NTITYSILLVACE 377 (670)
Q Consensus 306 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p------~~~t~~~ll~a~~ 377 (670)
|.+.|.+++|..+++...... +.....|+-|--+|++- ++..+.+++|.. +-.++| +...|.-+...|.
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887665 55778888888888865 344455554432 112222 3445666666777
Q ss_pred hcCCHHHHHH
Q 005905 378 RKDDVEVGLM 387 (670)
Q Consensus 378 ~~g~~~~a~~ 387 (670)
+.++++.|..
T Consensus 294 ~~~e~d~A~~ 303 (449)
T 1b89_A 294 KYEEYDNAII 303 (449)
T ss_dssp HTTCHHHHHH
T ss_pred hhchHHHHHH
Confidence 7777777765
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=1.4e-11 Score=134.85 Aligned_cols=380 Identities=9% Similarity=0.074 Sum_probs=266.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHHHHHHHHH-HcCCCHHHHH
Q 005905 36 IRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVC-ASSKDSEGAF 112 (670)
Q Consensus 36 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~li~~~-~~~g~~~~A~ 112 (670)
.+.|++++|..+|+++.+.. |.+..+....+..+.+.|++++|..+|++.. .|+...|...+... ...|+++.|.
T Consensus 23 ~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHH
Confidence 46899999999999999876 7777777778888889999999999999864 47888888777533 4567777766
Q ss_pred H----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHh---c-C-CCC---HHHHHHHHHHH-----
Q 005905 113 Q----VLRLVQEA-GLKA-DCKLYTTLITTCAK---------SGKVDAMFE---N-V-KPD---RVVFNALITAC----- 164 (670)
Q Consensus 113 ~----~~~~m~~~-g~~p-d~~~~~~li~~~~~---------~g~~~~~~~---~-~-~~~---~~~~~~li~~~----- 164 (670)
+ +|+..+.. |..| +...|...+....+ .|+++.+.. . + .|+ ...|.......
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~ 180 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch
Confidence 5 77776653 5444 45677777776554 455554332 1 1 232 23444322211
Q ss_pred --------HhcCCHHHHHHHHHHH------hhCCC-CCCCC--------HHHHHHHHHHHHHc----CCH----HHHHHH
Q 005905 165 --------GQSGAVDRAFDVLAEM------NAEVH-PVDPD--------HITIGALMKACANA----GQV----DRAREV 213 (670)
Q Consensus 165 --------~~~g~~~~A~~l~~~m------~~~~~-~~~pd--------~~t~~~li~~~~~~----g~~----~~A~~~ 213 (670)
.+.+++..|..++..+ ..... .+.|+ ...|...+...... ++. +.+..+
T Consensus 181 ~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~ 260 (530)
T 2ooe_A 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFA 260 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHH
Confidence 1345677787777652 22110 13444 25676666544332 233 488899
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005905 214 YKMIHKYNIKGTPEVYTIAINCCSQ-------TGDWE-------FACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279 (670)
Q Consensus 214 ~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 279 (670)
|++..... +.+...|......+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++++
T Consensus 261 y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 261 YEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 99988864 6678899998888876 79987 899999999863223367889999999999999999
Q ss_pred HHHHHHHHHHCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhCCChhHHHHHHHHH
Q 005905 280 AFEILQEAKNQGISVG-IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALIT-ALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 280 A~~i~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~l~~~m 357 (670)
|..+|+.+.+.. +.+ ..+|..++..+.+.|++++|.++|++..+... .+...|..... .+...|+.++|..+|++.
T Consensus 340 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 340 VHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 999999999864 223 35899999999999999999999999987532 23333332222 234689999999999998
Q ss_pred HhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHh--hHHHHHHhH
Q 005905 358 KSLGLCP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG-VIPN--LVMFKCIIGMCSR--RYEKARTLN 422 (670)
Q Consensus 358 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~r--~~~~a~~l~ 422 (670)
.+. .| +...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+....+ ..+.+..+.
T Consensus 418 l~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 418 LKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 874 34 57888888999999999999999999998863 3333 4456555554433 345554443
No 32
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.59 E-value=2.1e-11 Score=139.44 Aligned_cols=342 Identities=15% Similarity=0.144 Sum_probs=254.2
Q ss_pred CCCchhhHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHH
Q 005905 22 AHDVSEQLHSYNRLIRQGRISECIDLLEDMERKGL-LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMS 100 (670)
Q Consensus 22 ~~~~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~ 100 (670)
+.++..--.+...++..|.+.+|+++++++.-.+- +..+..+..+++....+. +.....++......-+ ..-+..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~ 1057 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIAN 1057 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHH
Confidence 44555666667778899999999999999984431 124445554444444333 4444455544443222 445778
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 101 VCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENV--KPDRVVFNALITACGQSGAVDRAFDVLA 178 (670)
Q Consensus 101 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~ 178 (670)
.|...|.+++|..+|++.. -.....+.++. ..++++++.+-. --+..+|..+..++...|++++|++.|.
T Consensus 1058 Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 8899999999999999852 12222333433 667788766522 2457889999999999999999999996
Q ss_pred HHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005905 179 EMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258 (670)
Q Consensus 179 ~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 258 (670)
+. -|...|..++.+|.+.|++++|.+.|....+.. +++...+.++.+|++.+++++...+. + .
T Consensus 1130 KA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A 1130 KA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred hc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence 53 356788889999999999999999999887754 33344556999999999988644332 2 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005905 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALI 338 (670)
Q Consensus 259 p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 338 (670)
++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++.. +..+|..+-
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~ 1257 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 1257 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHH
Confidence 46667778999999999999999999984 489999999999999999999999763 778999999
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
.+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++...... +-....|+-+-.++++
T Consensus 1258 ~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 999999999999887654 34456677788999999999999999997766543 2334455555556554
No 33
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.55 E-value=7.9e-11 Score=128.75 Aligned_cols=393 Identities=11% Similarity=0.086 Sum_probs=270.6
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Q 005905 48 LEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLK 124 (670)
Q Consensus 48 ~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 124 (670)
|++..+.. |.+......++.. .+.|++++|..+|+++. +.+...|...+..+.+.|++++|..+|++++.. .
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 55566665 6666655556664 56789999999998763 456778999999999999999999999999986 3
Q ss_pred CCHHHHHHHHHHH-HhcCCHHH-------HHh------cCC-CCHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 005905 125 ADCKLYTTLITTC-AKSGKVDA-------MFE------NVK-PDRVVFNALITACGQ---------SGAVDRAFDVLAEM 180 (670)
Q Consensus 125 pd~~~~~~li~~~-~~~g~~~~-------~~~------~~~-~~~~~~~~li~~~~~---------~g~~~~A~~l~~~m 180 (670)
|+...|...+... ...|+.+. +++ +.. ++...|...+..... .|++++|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6877777766533 33454332 333 223 467788888876654 78999999999999
Q ss_pred hhCCCCCCCCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHH------HcC---CCCC--------HHHHH
Q 005905 181 NAEVHPVDPDHITIGALMKAC-------------ANAGQVDRAREVYKMIH------KYN---IKGT--------PEVYT 230 (670)
Q Consensus 181 ~~~~~~~~pd~~t~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~~---~~~~--------~~~~~ 230 (670)
... +..+....|....... .+.++++.|..++.++. +.. ++|+ ...|.
T Consensus 157 l~~--P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 157 CVN--PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp TTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred Hhc--hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 863 1121123333222211 12456778888877632 211 2443 35677
Q ss_pred HHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHH
Q 005905 231 IAINCCSQT----GDW----EFACSVYDDMTKKGVIPDEVFLSALIDFAGH-------AGKVE-------AAFEILQEAK 288 (670)
Q Consensus 231 ~li~~~~~~----g~~----~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~-------~g~~~-------~A~~i~~~m~ 288 (670)
..+...... ++. ..+..+|++.+.... -+...|..+...+.+ .|+++ +|..+++...
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 766554432 233 478889999887643 367888888888775 79987 8999999998
Q ss_pred HCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-H
Q 005905 289 NQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-T 366 (670)
Q Consensus 289 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~ 366 (670)
+.-.+.+...|..++..+.+.|++++|..+|+++.+... .+ ...|..++..+.+.|++++|.++|++..+. .|+ .
T Consensus 314 ~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~ 390 (530)
T 2ooe_A 314 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRH 390 (530)
T ss_dssp TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCT
T ss_pred HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc-cCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCch
Confidence 733355688999999999999999999999999998632 23 358999999999999999999999999875 333 3
Q ss_pred HHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--hHHHHHHhHHHhhhhcCCCcc-chhhhH--
Q 005905 367 ITYSILLVA-CERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR--RYEKARTLNEHVLSFNSGRPQ-IENKWT-- 440 (670)
Q Consensus 367 ~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r--~~~~a~~l~~a~~~~~~~~~~-~~~~~~-- 440 (670)
..|...... +...|+.++|..+|+...+.. +-+...+..+++.+.+ .+++|..+.+......+..+. ...-|.
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 333332222 346899999999999988753 2356777788877665 677777776644333222222 122342
Q ss_pred ----------HHHHHHHHHHHH
Q 005905 441 ----------SLALMVYREAIV 452 (670)
Q Consensus 441 ----------~~A~~~~~~m~~ 452 (670)
+.+..+++++++
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 246677777765
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.2e-12 Score=126.10 Aligned_cols=226 Identities=11% Similarity=0.024 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CC----HH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK--GT----PE 227 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~----~~ 227 (670)
...|..+...|...|++++|+.+|++.... . .+...+..+..++...|++++|.+.|+.+.+.... ++ ..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~--~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL--H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 456888899999999999999999999885 2 67788999999999999999999999988775321 12 57
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~ 307 (670)
+|..+...|...|++++|...|++..+.. |+. ..+...|++++|...++.+.+.. +.+...+..+...|.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 89999999999999999999999998864 443 34667788999999999998875 456778889999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLM 387 (670)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 387 (670)
..|++++|...|++..+.. +.+..+|..+...|...|++++|+..|++..+.. +.+...|..+..++.+.|++++|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999998765 3478899999999999999999999999998752 3457888889999999999999999
Q ss_pred HHHHHHHC
Q 005905 388 LLSQAKED 395 (670)
Q Consensus 388 ~~~~m~~~ 395 (670)
.|++..+.
T Consensus 229 ~~~~a~~~ 236 (258)
T 3uq3_A 229 TLDAARTK 236 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988763
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=1e-12 Score=125.53 Aligned_cols=199 Identities=15% Similarity=-0.015 Sum_probs=122.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005905 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230 (670)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 230 (670)
+++...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++..+.+ +.+...+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 4556677777777888888888888888877641 2345667777777778888888888888777765 55667777
Q ss_pred HHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHH
Q 005905 231 IAINCCSQT-----------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY 299 (670)
Q Consensus 231 ~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~ 299 (670)
.+..+|.+. |++++|...|++..+.... +...+..+..++...|++++|...|++..+.. .+...+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 777777777 6666666666666665432 45556666666666666666666666666655 455666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 300 SSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
..+..+|...|++++|...|++..+.. +.+...+..+...+...|++++|+..|++.
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666666665543 224555666666666666666666665543
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=6.7e-12 Score=122.46 Aligned_cols=200 Identities=12% Similarity=-0.017 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...|..+...|...|++++|+.+|+++.... +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 3456666677777777777777777766531 2345566666667777777777777777766654 34566666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 312 (670)
..|...|++++|.++|+++.+.+..| +...+..+..++...|++++|...++++.+.. +.+..++..+...|...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 77777777777777777766522233 33455555666666666666666666665543 33455566666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 313 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
++|...|+++.+.. +.+...+..+...|...|+.++|.+.++++.+
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66666666655443 23455555566666666666666666666655
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=1e-11 Score=133.44 Aligned_cols=298 Identities=11% Similarity=-0.003 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhhC------------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcC------
Q 005905 61 KVYHARFFNVCKSQKAIKEAFRFFKLV------------PNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAG------ 122 (670)
Q Consensus 61 ~~~~~~l~~~~~~~~~~~~A~~~~~~~------------~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g------ 122 (670)
..++..+..++...|++++|++.|++. ......+|+.+..+|...|++++|...|++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 344455666666667777777666532 12235567777777777777777777776655420
Q ss_pred CC-CCHHHHHHHHHHHHhcC--CHHHHHh------cCCC-CHHHHHHHHHH---HHhcCCHHHHHHHHHHHhhCCCCCCC
Q 005905 123 LK-ADCKLYTTLITTCAKSG--KVDAMFE------NVKP-DRVVFNALITA---CGQSGAVDRAFDVLAEMNAEVHPVDP 189 (670)
Q Consensus 123 ~~-pd~~~~~~li~~~~~~g--~~~~~~~------~~~~-~~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~~~~~~p 189 (670)
.. ....++..+..++.+.| +++++.+ .+.| +...+..+..+ +...++.++|++.|++..+.. +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~---p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN---PD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC---SS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC---Cc
Confidence 01 12344554444444443 3444332 1223 34444444333 334566677777777766531 22
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005905 190 DHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265 (670)
Q Consensus 190 d~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 265 (670)
+...+..+...+.. .|++++|.+.+++..... +.+..++..+...|.+.|++++|...|++..+.... +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence 34444444444443 356677777777776654 556677777777777777777777777777766433 445555
Q ss_pred HHHHHHHhc-------------------CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005905 266 ALIDFAGHA-------------------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326 (670)
Q Consensus 266 ~li~~~~~~-------------------g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 326 (670)
.+..+|... +..+.|...+....+.. +.+..++..+...|...|++++|...|++..+..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 554444221 22456666666666554 3344566677778888888888888888777654
Q ss_pred CCCCHH--HHHHHHH-HHHhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 327 LKPTVS--TMNALIT-ALCDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 327 ~~p~~~--~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
..+... .+..+.. .+...|+.++|+..|++..+ +.|+.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~ 405 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKS 405 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCC
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccc
Confidence 322211 1222221 23466778888888877766 34554
No 38
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=1.1e-11 Score=118.37 Aligned_cols=201 Identities=8% Similarity=-0.057 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...|..+...|...|++++|++.|+++.... +.+...+..+...+...|++++|.+.|+.+.+.. +.+..++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD---PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 4455566666666666666666666665531 2234555566666666666666666666665543 34555666666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 005905 234 NCCSQT-GDWEFACSVYDDMTKKGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 234 ~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~ 311 (670)
..|... |++++|...|+++.+.+..|+ ...+..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 666666 666666666666655222222 3445555555666666666666666555543 2334555555555666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 312 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+++|...|+++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 666666665555433213444555555555555555555555555543
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.49 E-value=3e-12 Score=122.31 Aligned_cols=201 Identities=12% Similarity=-0.052 Sum_probs=162.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005905 188 DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267 (670)
Q Consensus 188 ~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 267 (670)
+++...+..+...+.+.|++++|...|+...+.. +.+...+..+..++.+.|++++|...|++..+.... +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 3566788888999999999999999999999876 678899999999999999999999999999987654 67788889
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005905 268 IDFAGHA-----------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336 (670)
Q Consensus 268 i~~~~~~-----------g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 336 (670)
..++... |++++|...++...+.. +-+...+..+..+|...|++++|...|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 9999999 99999999999998875 4567888999999999999999999999998877 68899999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 337 LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 337 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999999998742 33577788888899999999999999876543
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.48 E-value=1.7e-11 Score=119.48 Aligned_cols=208 Identities=12% Similarity=0.031 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270 (670)
Q Consensus 191 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 270 (670)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|.+.|+++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4567788889999999999999999998875 567889999999999999999999999999887543 77888999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhH
Q 005905 271 AGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349 (670)
Q Consensus 271 ~~~~g~~~~A~~i~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 349 (670)
|...|++++|.++++.+.+.+..| +...+..+...|...|++++|...|++..+.. +.+...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998733333 56788899999999999999999999988765 3468899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404 (670)
Q Consensus 350 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 404 (670)
|...|+++.+. .+.+...+..+...+...|+.++|.++++.+.+.. |+...+
T Consensus 194 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEY 245 (252)
T ss_dssp HHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHH
T ss_pred HHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHH
Confidence 99999999875 24567778888889999999999999999998754 544433
No 41
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=7.4e-11 Score=126.71 Aligned_cols=302 Identities=10% Similarity=-0.026 Sum_probs=211.7
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHh----------c---
Q 005905 91 TLSTFNMLMSVCASSKDSEGAFQVLRLVQEA--------GLKADCKLYTTLITTCAKSGKVDAMFE----------N--- 149 (670)
Q Consensus 91 ~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~pd~~~~~~li~~~~~~g~~~~~~~----------~--- 149 (670)
....||.|...+...|++++|++.|++.++. .-+....+|+.+..+|...|+++++.. .
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3567999999999999999999999887642 122345788999999999999887643 1
Q ss_pred -CC-CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHHHHcC
Q 005905 150 -VK-PDRVVFNALITACGQS--GAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKA---CANAGQVDRAREVYKMIHKYN 221 (670)
Q Consensus 150 -~~-~~~~~~~~li~~~~~~--g~~~~A~~l~~~m~~~~~~~~pd~-~t~~~li~~---~~~~g~~~~A~~~~~~m~~~~ 221 (670)
.. ....+++.+..++... +++++|++.|++.... .|+. ..+..+..+ +...++.++|++.|++..+.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~----~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK----KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 11 2345666666666554 4689999999998874 4543 333333333 445677888999998888765
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHH
Q 005905 222 IKGTPEVYTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297 (670)
Q Consensus 222 ~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~ 297 (670)
+.+..++..+...+.. .|++++|...+++....... +...+..+...|...|++++|...+.+..+.. +.+..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 5566777666555544 46778899999988876543 67788889999999999999999999988765 44566
Q ss_pred HHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 298 SYSSLMGACSNA-------------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 298 ~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
++..+...|... +.++.|...|++..+.. +.+..++..+...|...|++++|++.|++..
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 777776665432 23567777787776654 3356678888899999999999999999988
Q ss_pred hCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 005905 359 SLGLCPNTI--TYSILLV-ACERKDDVEVGLMLLSQAKEDGVIPNLV 402 (670)
Q Consensus 359 ~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~g~~p~~~ 402 (670)
+....|... .+..+.. ...+.|+.++|+..|.+..+. .|+..
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~ 406 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSR 406 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCH
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccH
Confidence 753222211 1222222 234678999999999888874 35543
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.2e-11 Score=118.88 Aligned_cols=227 Identities=11% Similarity=0.016 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHH
Q 005905 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVD 171 (670)
Q Consensus 92 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 171 (670)
...|..+...+...|++++|+..|+++.+.. .+..++..+. ..|...|+++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~---------------------------~~~~~~~~~~ 55 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRA---------------------------AAEYEKGEYE 55 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHH---------------------------HHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHH---------------------------HHHHHcccHH
Confidence 3456777788888888888888888887765 4444444444 4444445555
Q ss_pred HHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 172 RAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACS 247 (670)
Q Consensus 172 ~A~~l~~~m~~~~~~~~pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 247 (670)
+|+..|++.........++ ...+..+...+...|++++|...|+++.+.. |+. ..+.+.|++++|..
T Consensus 56 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 56 TAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELK 126 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHH
Confidence 5555555544321111122 3455555566666666666666666655533 221 23445556666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 005905 248 VYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL 327 (670)
Q Consensus 248 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 327 (670)
.++++...... +...+..+...+...|++++|...++.+.+.. +.+..++..+...|.+.|++++|...|++..+..
T Consensus 127 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~- 203 (258)
T 3uq3_A 127 KAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD- 203 (258)
T ss_dssp HHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-
Confidence 66666554322 34455566666666666666666666666554 3345666667777777777777777777666543
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 328 KPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 328 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+.+...|..+...|...|++++|.+.|++..+
T Consensus 204 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 204 PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23466666777777777777777777776655
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=1.4e-10 Score=114.71 Aligned_cols=224 Identities=11% Similarity=-0.016 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEV 228 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 228 (670)
+..++..+...|...|++++|+..|++..+. -+...+..+...|.. .+++++|.+.|++..+.+ +..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 5667888889999999999999999999873 245678888889999 999999999999998876 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCccHHHHH
Q 005905 229 YTIAINCCSQ----TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYS 300 (670)
Q Consensus 229 ~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~i~~~m~~~~~~~~~~~~~ 300 (670)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 9999999999 999999999999999875 67888889999998 999999999999999876 567788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 301 SLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSIL 372 (670)
Q Consensus 301 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 372 (670)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ | ...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHH
Confidence 88888988 999999999999988764 67888889999999 999999999999998864 2 6677777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCC
Q 005905 373 LVACER----KDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 373 l~a~~~----~g~~~~a~~~~~~m~~~g 396 (670)
...|.+ .++.++|.++|++..+.|
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 788888 899999999999998876
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=2.9e-11 Score=115.29 Aligned_cols=211 Identities=7% Similarity=-0.088 Sum_probs=178.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 269 (670)
+...+..+...+...|++++|.+.|+.+.+.. +.+..++..+...|...|++++|...|+++.+.... +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 45677888899999999999999999998875 567889999999999999999999999999887543 7788899999
Q ss_pred HHHhc-CChHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 005905 270 FAGHA-GKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL 347 (670)
Q Consensus 270 ~~~~~-g~~~~A~~i~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 347 (670)
.+... |++++|...++.+.+.+..| +..++..+...|...|++++|...|+++.+.. +.+...+..+...|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 99999999999998843233 46788899999999999999999999988764 33688899999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005905 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFK 405 (670)
Q Consensus 348 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 405 (670)
++|...|++..+.....+...+..+...+...|+.+.+..+++.+.+.. |+...+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~ 219 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF--PYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHH
Confidence 9999999998875311567777777788899999999999999887643 5544433
No 45
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.46 E-value=2.8e-10 Score=130.30 Aligned_cols=290 Identities=13% Similarity=0.155 Sum_probs=126.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--------------------CCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCH
Q 005905 33 NRLIRQGRISECIDLLEDMERKGL--------------------LDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTL 92 (670)
Q Consensus 33 ~~l~~~g~~~~A~~l~~~m~~~g~--------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 92 (670)
..++..|++++|..+|++.....- ......++..+.+++...|++++|++.|.+. .|.
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~ 1134 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDP 1134 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CCh
Confidence 445577888888888877521100 0111222223334444444444444444332 233
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhc-CCCCHHHHHHHHHHHHhcCCHH
Q 005905 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN-VKPDRVVFNALITACGQSGAVD 171 (670)
Q Consensus 93 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~ 171 (670)
..|.-++.+|.+.|++++|.+.|....+.. ++....+.++.+|++.+++++..+- -.++...|..+...|...|+++
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Ye 1212 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYD 1212 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHH
Confidence 334444444444444444444444333321 2222222344444444444432111 1233334444444444444444
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251 (670)
Q Consensus 172 ~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 251 (670)
+|..+|... ..|..+...+.+.|+++.|.+.+++. .+..+|..+-.+|...|++..|......
T Consensus 1213 eA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~ 1275 (1630)
T 1xi4_A 1213 AAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH 1275 (1630)
T ss_pred HHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 444444432 13444444444444444444444433 1224444444444444444444443322
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC
Q 005905 252 MTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--KNWQKALELYEHMKSIKLKP 329 (670)
Q Consensus 252 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p 329 (670)
+..+...+..++..|.+.|.+++|+.+++...... +-....|+-|...|++. +++.++.+.|..-.. ++|
T Consensus 1276 -----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k 1347 (1630)
T 1xi4_A 1276 -----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPK 1347 (1630)
T ss_pred -----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cch
Confidence 11233344455555555555555555555444333 22333444444444432 234444444443211 111
Q ss_pred ------CHHHHHHHHHHHHhCCChhHHH
Q 005905 330 ------TVSTMNALITALCDGDQLPKTM 351 (670)
Q Consensus 330 ------~~~~~~~li~~~~~~g~~~~A~ 351 (670)
+...|..++..|.+.|+++.|.
T Consensus 1348 ~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1348 VLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3444556666666666666555
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=7e-12 Score=121.37 Aligned_cols=201 Identities=12% Similarity=0.096 Sum_probs=134.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
....|..+...+...|++++|..+|+++... .+.+...+..+...+...|++++|.+.|+.+.+.. +.+..++..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE---NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp --------------------CCTTHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 4556777777788888888888888888764 23356677777788888888888888888877765 4567778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCH
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNW 312 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 312 (670)
...|...|++++|...|+++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence 88888888888888888887776532 56677777777788888888888888777654 44566777777777788888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005905 313 QKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSL 360 (670)
Q Consensus 313 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 360 (670)
++|...|+++.+.. +.+..+|..+...|...|++++|.+.|+++.+.
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 88888887776554 235667777777777778888888777777663
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=3.3e-11 Score=125.00 Aligned_cols=246 Identities=11% Similarity=-0.001 Sum_probs=203.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQ-VDRAREVYKMIHKYNIKGTPEVYT 230 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~ 230 (670)
+...|+.+...+.+.|++++|+..|++.... .| +...|..+..++...|+ +++|+..|+++.+.+ +.+..+|+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l----~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~ 170 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL----NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 3567888889999999999999999999875 45 46778889999999997 999999999999987 66889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh-c
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN-A 309 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~-~ 309 (670)
.+..+|.+.|++++|+..|+++++.... +...|..+..++...|++++|+..++.+++.. +-+...|+.+..+|.+ .
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998765 88899999999999999999999999999886 5578899999999999 6
Q ss_pred CCHHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--
Q 005905 310 KNWQKA-----LELYEHMKSIKLKPTVSTMNALITALCDGD--QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD-- 380 (670)
Q Consensus 310 g~~~~A-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g-- 380 (670)
|..++| ...|++..+.. +-+...|+.+...+...| ++++|++.+.++ +. -+.+...+..+..+|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcc
Confidence 665777 58888887765 337889999999999988 689999999988 32 3445677888888888764
Q ss_pred -------CHHHHHHHHHHH-HHCCCCCCHHH-HHHHHHH
Q 005905 381 -------DVEVGLMLLSQA-KEDGVIPNLVM-FKCIIGM 410 (670)
Q Consensus 381 -------~~~~a~~~~~~m-~~~g~~p~~~~-~~~li~~ 410 (670)
.+++|.++|+++ .+. .|...- |..+...
T Consensus 326 ~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRS 362 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHH
Confidence 358999999988 553 354443 3334343
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=6.9e-12 Score=123.94 Aligned_cols=196 Identities=12% Similarity=-0.025 Sum_probs=105.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 235 (670)
+|..+...|...|++++|+..|++..... +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+..+
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~ 120 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA 120 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence 44455555666666666666666665531 2235556666666666666666666666666543 3345566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHH
Q 005905 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315 (670)
Q Consensus 236 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (670)
|.+.|++++|...|+++.+.. |+.......+..+...|++++|...+....... +++...+ .++..+...++.++|
T Consensus 121 ~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 121 LYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTL 196 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHH
Confidence 666666666666666665543 222233333334445566666666665554432 2222222 244555555555666
Q ss_pred HHHHHHHHhCCCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 316 LELYEHMKSIKLK---PTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 316 ~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
...+....+.... .+..+|..+...|...|++++|...|++...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666555432110 0134555555555566666666666665554
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.42 E-value=1.5e-11 Score=119.04 Aligned_cols=203 Identities=14% Similarity=0.075 Sum_probs=161.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005905 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268 (670)
Q Consensus 189 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 268 (670)
.....|..+...+...|++++|...|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.... +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 344567778888999999999999999998865 567889999999999999999999999999887543 778889999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChh
Q 005905 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348 (670)
Q Consensus 269 ~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 348 (670)
..+...|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|+++.+.. +.+...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998875 5567889999999999999999999999988764 347889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 349 KTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 349 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
+|+..|++..+.. +.+..++..+..++...|++++|..+++++.+..
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999988752 4467888899999999999999999999998854
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.41 E-value=4.6e-11 Score=117.90 Aligned_cols=239 Identities=9% Similarity=-0.035 Sum_probs=191.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAI 233 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li 233 (670)
.+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+.+.+....+ ...+|..+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK---YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT---CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 45566778899999999999999998752 2234478888889999999999999999998843222 244588999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 313 (670)
..|...|++++|...|++..+.... +..++..+...|...|++++|...+++..+.. +.+..++..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887544 66789999999999999999999999988774 556777777773444456999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHH
Q 005905 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLG-LCPN------TITYSILLVACERKDDVE 383 (670)
Q Consensus 314 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~------~~t~~~ll~a~~~~g~~~ 383 (670)
+|.+.|+++.+.. +.+...+..+...+...|+ +++|...|++..+.. -.|+ ...|..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999998765 3357888888888888888 888999999887631 1233 256777888899999999
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 005905 384 VGLMLLSQAKEDGVIPNLV 402 (670)
Q Consensus 384 ~a~~~~~~m~~~g~~p~~~ 402 (670)
+|..+|+++.+.. |+..
T Consensus 239 ~A~~~~~~al~~~--p~~~ 255 (272)
T 3u4t_A 239 KADAAWKNILALD--PTNK 255 (272)
T ss_dssp HHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHhcC--ccHH
Confidence 9999999998854 5533
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.40 E-value=3.4e-11 Score=118.87 Aligned_cols=223 Identities=12% Similarity=-0.023 Sum_probs=181.1
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 005905 165 GQSGAVDRAFDVLAEMNAEVHPVDP--DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDW 242 (670)
Q Consensus 165 ~~~g~~~~A~~l~~~m~~~~~~~~p--d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 242 (670)
...|++++|+..|+++.... ...+ +..++..+...+...|++++|...|+++.+.. +.+..+|..+...|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASR-ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcc-cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 34578999999999998752 1112 35678888999999999999999999999876 56789999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 243 EFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 243 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
++|...|++..+.... +...+..+..+|...|++++|...++.+.+.. |+.......+..+...|++++|...|++.
T Consensus 94 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999987543 67889999999999999999999999998864 33334444555667779999999999877
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 323 KSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN-----TITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 323 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
.... +++...+. ++..+...++.++|+..+.+.... .|+ ..++..+..++.+.|++++|...|+++.+..
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 6653 33444454 677778888889999999988753 232 4778888899999999999999999998754
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.39 E-value=1.2e-09 Score=107.87 Aligned_cols=225 Identities=12% Similarity=0.008 Sum_probs=186.7
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHh---
Q 005905 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQ--- 166 (670)
Q Consensus 90 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~--- 166 (670)
.+..++..+...+...|++++|+..|++..+.+ +. .++..+...|..
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~---------------------------~a~~~lg~~~~~g~~ 53 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---EN---------------------------SGCFNLGVLYYQGQG 53 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CH---------------------------HHHHHHHHHHHHTSS
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CH---------------------------HHHHHHHHHHHcCCC
Confidence 356677888888889999999999999887732 22 234445556666
Q ss_pred -cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 005905 167 -SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACAN----AGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQ--- 238 (670)
Q Consensus 167 -~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~--- 238 (670)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +..++..+...|..
T Consensus 54 ~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~ 125 (273)
T 1ouv_A 54 VEKNLKKAASFYAKACDLN-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKV 125 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSS
T ss_pred cCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCC
Confidence 888999999999988752 66788888889998 999999999999998875 67888999999998
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----c
Q 005905 239 -TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----A 309 (670)
Q Consensus 239 -~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~----~ 309 (670)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...++...+.+ +...+..+..+|.. .
T Consensus 126 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 126 VTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSC
T ss_pred cccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 999999999999998876 56677778888887 899999999999998875 46778888999999 9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCC
Q 005905 310 KNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLG 361 (670)
Q Consensus 310 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 361 (670)
+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99999999999988764 37788888889998 899999999999988754
No 53
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.38 E-value=7.2e-11 Score=116.47 Aligned_cols=237 Identities=11% Similarity=0.020 Sum_probs=169.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 95 FNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAF 174 (670)
Q Consensus 95 y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 174 (670)
+......+...|++++|+..|++.++.. |+ +...|..+...|...|++++|+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~--------------------------~~~~~~~l~~~~~~~~~~~~A~ 57 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK--YN--------------------------SPYIYNRRAVCYYELAKYDLAQ 57 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT--CC--------------------------CSTTHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC--------------------------cHHHHHHHHHHHHHHhhHHHHH
Confidence 4455667778888888888888887753 22 2224555666777788888888
Q ss_pred HHHHHHhhCCCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 175 DVLAEMNAEVHPVDPD--HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252 (670)
Q Consensus 175 ~l~~~m~~~~~~~~pd--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 252 (670)
..|++..... -.|+ ...|..+...+...|++++|.+.|+...+.. +.+..+|..+...|...|++++|...|++.
T Consensus 58 ~~~~~a~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 58 KDIETYFSKV--NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp HHHHHHHTTS--CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred HHHHHHHhcc--CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 8888887632 1222 3347778888888888888888888888765 456678888888888888888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CC
Q 005905 253 TKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN---WQKALELYEHMKSIK-LK 328 (670)
Q Consensus 253 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~ 328 (670)
.+... .+...+..+...+...+++++|.+.++.+.+.. +.+...+..+..++...|+ +++|...|++..+.. ..
T Consensus 135 l~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 212 (272)
T 3u4t_A 135 IRPTT-TDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212 (272)
T ss_dssp CCSSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG
T ss_pred hhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc
Confidence 77633 255666666624444558888888888888764 4446777777788887777 777887777765431 11
Q ss_pred CC------HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 329 PT------VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 329 p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
|+ ..+|..+...|...|++++|.+.|++..+. .|+.
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~ 254 (272)
T 3u4t_A 213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTN 254 (272)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccH
Confidence 22 256777888888889999999999888874 4543
No 54
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.37 E-value=1.8e-10 Score=122.91 Aligned_cols=341 Identities=11% Similarity=0.010 Sum_probs=230.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhH---HHHHHHhhhCCCCCHHHHHHHHHHHHc
Q 005905 28 QLHSYNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAI---KEAFRFFKLVPNPTLSTFNMLMSVCAS 104 (670)
Q Consensus 28 ~~~~~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~y~~li~~~~~ 104 (670)
+...-..+.+.|++++|+++|++..+.|- +..... +...+...|.. ++|+.+|++....+...+..+...+..
T Consensus 6 ~~~la~~~~~~g~~~~A~~~~~~aa~~g~-~~A~~~---Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 6 DQRLANEALKRGDTVTAQQNYQQLAELGY-SEAQVG---LADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAA 81 (452)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CTGGGT---CC----------------------------CHHHHHHHHHT
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHHCCC-HHHHHH---HHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 34455666789999999999999988873 222211 33334445666 899999988765577777777775666
Q ss_pred CC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHhc-----CCCCHHHHHHHHHHHHhcCC--
Q 005905 105 SK-----DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---MFEN-----VKPDRVVFNALITACGQSGA-- 169 (670)
Q Consensus 105 ~g-----~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~---~~~~-----~~~~~~~~~~li~~~~~~g~-- 169 (670)
.+ ++++|+..|++..+.|.. + .+..|..+|...+..+. +++. -.-+...+..|...|...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 55 789999999999997743 3 66677777776654332 1110 11245566677778887774
Q ss_pred --HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----C
Q 005905 170 --VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAG---QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT----G 240 (670)
Q Consensus 170 --~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g 240 (670)
.+++..++...... .|+ .+..+...|...| +.++|.+.|+...+.| +++...+..+...|... +
T Consensus 159 ~~~~~a~~~~~~a~~~----~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 159 QHLDDVERICKAALNT----TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp GGHHHHHHHHHHHTTT----CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCHHHHHHHHHHHHcC----CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 45555555555432 444 7778888899999 9999999999999988 66667667777777655 7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC-----CH
Q 005905 241 DWEFACSVYDDMTKKGVIPDEVFLSALIDF-A--GHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-----NW 312 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~--~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~ 312 (670)
++++|...|++.. .| +...+..+-.. + ...++.++|.+.|++..+.| +...+..|..+|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 9999999999988 44 44555666655 4 56899999999999999887 5777788888887 55 99
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHH
Q 005905 313 QKALELYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE----RKDDVEV 384 (670)
Q Consensus 313 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~~ 384 (670)
++|...|++.. .-+...+..|...|.. ..+.++|...|++..+.|. |+.. ..|-..|. ...+.++
T Consensus 304 ~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A~--~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSAD--FAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTHH--HHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHHH--HHHHHHHHhCCCCCCCHHH
Confidence 99999999877 3477888888888876 3489999999999998774 4433 33333443 2468999
Q ss_pred HHHHHHHHHHCCC
Q 005905 385 GLMLLSQAKEDGV 397 (670)
Q Consensus 385 a~~~~~~m~~~g~ 397 (670)
|..+|+...+.|.
T Consensus 377 A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 377 AYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999988874
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.36 E-value=2.3e-10 Score=118.62 Aligned_cols=246 Identities=11% Similarity=0.054 Sum_probs=193.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCC-H
Q 005905 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGA-V 170 (670)
Q Consensus 92 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~-~ 170 (670)
...|+.+..++...|++++|+..|+++++.. |+ +..+|+.+...|...|+ +
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~--------------------------~~~a~~~~g~~l~~~g~d~ 148 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN--AA--------------------------NYTVWHFRRVLLKSLQKDL 148 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TT--------------------------CHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--cc--------------------------CHHHHHHHHHHHHHcccCH
Confidence 5678888899999999999999999998853 33 34456666677777886 9
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYD 250 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 250 (670)
++|+..|++..... +-+...|..+..++...|++++|+..|+++.+.+ +.+..+|..+..++.+.|++++|+..|+
T Consensus 149 ~eAl~~~~~al~l~---P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~ 224 (382)
T 2h6f_A 149 HEEMNYITAIIEEQ---PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVD 224 (382)
T ss_dssp HHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999988752 3356788888889999999999999999998876 6678899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh-cCChHHH-----HHHHHHHHHCCCCccHHHHHHHHHHHHhcC--CHHHHHHHHHHH
Q 005905 251 DMTKKGVIPDEVFLSALIDFAGH-AGKVEAA-----FEILQEAKNQGISVGIISYSSLMGACSNAK--NWQKALELYEHM 322 (670)
Q Consensus 251 ~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A-----~~i~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m 322 (670)
++++.... +...|+.+..++.. .|..++| +..++...+.. +-+...|+.+...|.+.| ++++|.+.+.++
T Consensus 225 ~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 225 QLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 99988765 77888888888888 5665777 47888887765 456788888888898888 688999999888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCC---------ChhHHHHHHHHH-HhCCCCCCHHH-HHHHHHH
Q 005905 323 KSIKLKPTVSTMNALITALCDGD---------QLPKTMEVLSDM-KSLGLCPNTIT-YSILLVA 375 (670)
Q Consensus 323 ~~~~~~p~~~~~~~li~~~~~~g---------~~~~A~~l~~~m-~~~g~~p~~~t-~~~ll~a 375 (670)
+.. ..+...+..+...|.+.| ..++|+++|+++ .+ +.|...- |..+...
T Consensus 303 -~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 303 -QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRS 362 (382)
T ss_dssp -TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHH
T ss_pred -ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHH
Confidence 433 456788888988888864 258899999998 55 4565443 4333333
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=3.3e-10 Score=104.59 Aligned_cols=165 Identities=16% Similarity=0.050 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270 (670)
Q Consensus 191 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 270 (670)
...|..+...|...|++++|++.|++..+.+ +.+..+|..+..+|.+.|++++|...+......... +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 3445555555555555555555555555544 344555555555555555555555555555444332 34444444455
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHH
Q 005905 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350 (670)
Q Consensus 271 ~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 350 (670)
+...++++.|...+....+.. +.+..++..+...|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 555555555555555554443 3344555555555555556666655555555443 22455555555555555556566
Q ss_pred HHHHHHHHh
Q 005905 351 MEVLSDMKS 359 (670)
Q Consensus 351 ~~l~~~m~~ 359 (670)
++.|++..+
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555554
No 57
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=2e-09 Score=108.67 Aligned_cols=219 Identities=14% Similarity=0.092 Sum_probs=176.1
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACA-------NAGQV-------DRAREVYKMIHKYNIKGTPEVYTIAINCC 236 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (670)
++|..+|++.... .+-+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~---~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 7888999999874 2335567777776665 35886 89999999998832255678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH-hcCCHHH
Q 005905 237 SQTGDWEFACSVYDDMTKKGVIPDEV-FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS-NAKNWQK 314 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~ 314 (670)
.+.|++++|..+|++.++.... +.. .|..+...+.+.|++++|..+|+...+.. +.+...|........ ..|++++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred HhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999986432 233 78899999999999999999999999875 344555655444433 3699999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 315 ALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLG-LCP--NTITYSILLVACERKDDVEVGLMLLSQ 391 (670)
Q Consensus 315 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~ 391 (670)
|..+|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.| +...|..++....+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999987654 3378899999999999999999999999999863 455 466788888888899999999999999
Q ss_pred HHHC
Q 005905 392 AKED 395 (670)
Q Consensus 392 m~~~ 395 (670)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.28 E-value=7.6e-10 Score=102.15 Aligned_cols=168 Identities=14% Similarity=0.052 Sum_probs=148.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
.+..+|..+...|.+.|++++|++.|++..+.. +-+...+..+...|.+.|++++|...+....... +.+..++..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~ 78 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD---PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYI 78 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHH
Confidence 367789999999999999999999999998752 2356788889999999999999999999998876 567788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~ 311 (670)
+...+...++++.|...+.+..+.... +...+..+..+|.+.|++++|.+.|++..+.. +.+..++..+..+|.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC
Confidence 999999999999999999999887644 77888999999999999999999999998876 5678899999999999999
Q ss_pred HHHHHHHHHHHHhC
Q 005905 312 WQKALELYEHMKSI 325 (670)
Q Consensus 312 ~~~A~~~~~~m~~~ 325 (670)
+++|.+.|++..+.
T Consensus 157 ~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 157 RDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998875
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=2.7e-09 Score=107.63 Aligned_cols=225 Identities=9% Similarity=0.042 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHHh
Q 005905 109 EGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAV-------DRAFDVLAEMN 181 (670)
Q Consensus 109 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~-------~~A~~l~~~m~ 181 (670)
++|..+|++.+... +.+...|..+...+...++ .+.+.|++ ++|..+|++..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~--------------------~l~~~g~~~~~~~~~~~A~~~~~rAl 91 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSK--------------------LLAEKGDMNNAKLFSDEAANIYERAI 91 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH--------------------HHHHTSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhch--------------------hhhhccchhhcccchHHHHHHHHHHH
Confidence 57777888877752 3355555555544432211 12345664 89999999998
Q ss_pred hCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005905 182 AEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259 (670)
Q Consensus 182 ~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 259 (670)
.. +.|+ ...|..++..+.+.|++++|..+|+++.+.. +.+.. +|..+...+.+.|++++|..+|++..+....
T Consensus 92 ~~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~- 166 (308)
T 2ond_A 92 ST---LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART- 166 (308)
T ss_dssp TT---TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-
T ss_pred HH---hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-
Confidence 62 3454 5578889999999999999999999998854 23344 8999999999999999999999999887543
Q ss_pred CHHHHHHHHHHHH-hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHH
Q 005905 260 DEVFLSALIDFAG-HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-LKP--TVSTMN 335 (670)
Q Consensus 260 ~~~t~~~li~~~~-~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~ 335 (670)
+...|........ ..|+.++|..+|+...+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|.
T Consensus 167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~ 245 (308)
T 2ond_A 167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWA 245 (308)
T ss_dssp CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 4445544433322 3699999999999998764 4468889999999999999999999999998853 343 577899
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhC
Q 005905 336 ALITALCDGDQLPKTMEVLSDMKSL 360 (670)
Q Consensus 336 ~li~~~~~~g~~~~A~~l~~~m~~~ 360 (670)
.++..+.+.|+.++|..+++++.+.
T Consensus 246 ~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 246 RFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998873
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.27 E-value=1.1e-10 Score=122.14 Aligned_cols=202 Identities=13% Similarity=0.022 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGD--------------------WEFACS 247 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 247 (670)
++..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4444445555555555555555444332100 01 2244555555555555 555555
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHHhcCCHHHHHH
Q 005905 248 VYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GIS-VGIISYSSLMGACSNAKNWQKALE 317 (670)
Q Consensus 248 l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~ 317 (670)
.+.+..+. +..| ...++..+...|...|++++|...+++..+. +.. ....++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55544321 1111 1234555555666666666666666655432 100 112356666677777777777777
Q ss_pred HHHHHHhCCC-CCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 005905 318 LYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLM 387 (670)
Q Consensus 318 ~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 387 (670)
.|++..+... .++ ..++..+...|...|++++|...|++..+. +-.+. ..++..+...+...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7766543210 011 446666777777777777777777766541 11111 3456666667777788888887
Q ss_pred HHHHHHH
Q 005905 388 LLSQAKE 394 (670)
Q Consensus 388 ~~~~m~~ 394 (670)
++++..+
T Consensus 329 ~~~~al~ 335 (406)
T 3sf4_A 329 FAEKHLE 335 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.27 E-value=3.6e-10 Score=118.92 Aligned_cols=278 Identities=14% Similarity=0.036 Sum_probs=193.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHH
Q 005905 94 TFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRA 173 (670)
Q Consensus 94 ~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 173 (670)
.+..+...+...|++++|+..|+++++.+. .+.... ..+|..+...|...|++++|
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~-----------------------~~~~~~lg~~~~~~g~~~~A 105 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTL-----------------------SAIYSQLGNAYFYLGDYNKA 105 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHH-----------------------HHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHH-----------------------HHHHHHHHHHHHHCCCHHHH
Confidence 345566788889999999999999888632 122111 12345556666777777777
Q ss_pred HHHHHHHhhCCC--C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCC----
Q 005905 174 FDVLAEMNAEVH--P-VDPDHITIGALMKACANAGQVDRAREVYKMIHKY----N-IKGTPEVYTIAINCCSQTGD---- 241 (670)
Q Consensus 174 ~~l~~~m~~~~~--~-~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~---- 241 (670)
+..|++...... + .......+..+...|...|++++|...|++..+. + .+....++..+...|...|+
T Consensus 106 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 185 (411)
T 4a1s_A 106 MQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQ 185 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccccc
Confidence 777776654200 0 0122456677778888889999998888876553 1 11224567788888888888
Q ss_pred -------------HHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CccHHH
Q 005905 242 -------------WEFACSVYDDMTKK----GVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGI-----SVGIIS 298 (670)
Q Consensus 242 -------------~~~A~~l~~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~-----~~~~~~ 298 (670)
+++|...+++..+. +.. ....++..+...|...|++++|...+++..+... .....+
T Consensus 186 ~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (411)
T 4a1s_A 186 RNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRA 265 (411)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 88888888776542 111 1234677788888999999999999888765321 111347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCC-CHHH
Q 005905 299 YSSLMGACSNAKNWQKALELYEHMKSIKLK-----PTVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTIT 368 (670)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t 368 (670)
+..+...|...|++++|...|++..+.... ....++..+...|...|++++|...|++.... +..+ ...+
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 345 (411)
T 4a1s_A 266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345 (411)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence 888899999999999999999887643110 12567888899999999999999999987652 1111 1346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 369 YSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 369 ~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
+..+..+|...|++++|..+|++..+.
T Consensus 346 ~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 346 CWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 777888899999999999999888764
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.23 E-value=3.6e-10 Score=121.42 Aligned_cols=213 Identities=14% Similarity=0.013 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 170 VDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSV 248 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 248 (670)
+++++..+++.... ...+...+..+..++...|++ ++|.+.|++..+.. +.+..+|..+..+|.+.|++++|...
T Consensus 84 ~~~al~~l~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGS---AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTT---CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhcc---CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 67777888877654 234677788888888899999 99999999888876 56688899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc--------CC
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFAGHA---------GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA--------KN 311 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~~~~---------g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~--------g~ 311 (670)
|++..+.. |+...+..+..+|... |++++|.+.+++..+.. +.+...|..+..+|... |+
T Consensus 160 ~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 99988774 5678888888888888 89999999999988875 55678888888888888 88
Q ss_pred HHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 005905 312 WQKALELYEHMKSIKLK--PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLL 389 (670)
Q Consensus 312 ~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 389 (670)
+++|...|++..+.... .+...|..+..+|...|++++|++.|++..+.. +-+...+..+..++...|++++|...+
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988876421 378889999999999999999999999987742 234556777777888888888887755
Q ss_pred H
Q 005905 390 S 390 (670)
Q Consensus 390 ~ 390 (670)
.
T Consensus 316 ~ 316 (474)
T 4abn_A 316 G 316 (474)
T ss_dssp T
T ss_pred c
Confidence 4
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.22 E-value=3.1e-10 Score=115.03 Aligned_cols=133 Identities=12% Similarity=-0.020 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HH
Q 005905 263 FLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VS 332 (670)
Q Consensus 263 t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~ 332 (670)
++..+...+...|++++|...+++..+. +. .....++..+...|...|++++|...|++..+... .++ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 4445555555556666666555554432 10 11133566666667777777777777666543210 011 44
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 333 TMNALITALCDGDQLPKTMEVLSDMKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
++..+...|...|++++|...+++.... +-.+ ...++..+...+.+.|++++|..++++..+.
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5666677777777777777777766541 1111 1335566667777778888888777777653
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.21 E-value=1.2e-09 Score=113.93 Aligned_cols=309 Identities=9% Similarity=0.012 Sum_probs=198.1
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCch-HH-HHHHH-HHHHhhhhhHHHHH-----------HHhhhCC
Q 005905 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKG--LLDMD-KV-YHARF-FNVCKSQKAIKEAF-----------RFFKLVP 88 (670)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g--~~~~~-~~-~~~~l-~~~~~~~~~~~~A~-----------~~~~~~~ 88 (670)
+...+..|-..++.+++++|..+++++.+.- +..+. .. ++.++ .+.....+.++.+. +.++.+.
T Consensus 12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~ 91 (383)
T 3ulq_A 12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEID 91 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHH
Confidence 4455666888889999999999999987542 11122 11 12211 11111223333333 4444332
Q ss_pred --CCCHH------HHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHH
Q 005905 89 --NPTLS------TFNMLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNA 159 (670)
Q Consensus 89 --~~~~~------~y~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~ 159 (670)
+.+.. .|......+...|++++|+..|++..+.-. .+|... ...+|..
T Consensus 92 ~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------~a~~~~~ 148 (383)
T 3ulq_A 92 KKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE-----------------------KAEFFFK 148 (383)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-----------------------HHHHHHH
T ss_pred hcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH-----------------------HHHHHHH
Confidence 11111 122355677889999999999998876311 122110 1234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHH
Q 005905 160 LITACGQSGAVDRAFDVLAEMNAEVHPV----DPDHITIGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYT 230 (670)
Q Consensus 160 li~~~~~~g~~~~A~~l~~~m~~~~~~~----~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~ 230 (670)
+...|...|++++|+..|.+........ .....++..+...|...|++++|.+.|++..+.... ++ ..++.
T Consensus 149 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 228 (383)
T 3ulq_A 149 MSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 6666777777777777777665421011 112357788888888999999999988877653111 11 24677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCccHHHHHH
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKK----GV-IPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISVGIISYSS 301 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~~~~~~~~~~ 301 (670)
.+..+|...|++++|...|++..+. +. +....++..+..+|...|++++|...+++..+. +-+.....+..
T Consensus 229 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 308 (383)
T 3ulq_A 229 NIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888899999999999999888762 22 334567888888889999999999888887653 21222334667
Q ss_pred HHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 302 LMGACSNAKN---WQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 302 li~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+...|...|+ +++|..++++.. ..| ....+..+...|...|++++|.+.|++..+
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888 777877777652 122 344677788889999999999999988765
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.20 E-value=2.9e-10 Score=119.63 Aligned_cols=237 Identities=14% Similarity=0.013 Sum_probs=182.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCC
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-H----ITIGALMKACANAGQVDRAREVYKMIHKY----N-IKG 224 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~~ 224 (670)
..+..+...+...|++++|+..|++.... .|+ . ..+..+...|...|++++|...|++..+. + .+.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA----GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh----cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34556677889999999999999999875 333 2 46778888999999999999999887653 1 122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------hHHHHH
Q 005905 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKK----G-VIPDEVFLSALIDFAGHAGK-----------------VEAAFE 282 (670)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~p~~~t~~~li~~~~~~g~-----------------~~~A~~ 282 (670)
...++..+...|...|++++|...|++..+. + ......++..+...|...|+ +++|.+
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 3467888999999999999999999987654 1 11134577888889999999 999999
Q ss_pred HHHHHHHC----CC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCChhHHHH
Q 005905 283 ILQEAKNQ----GI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPKTME 352 (670)
Q Consensus 283 i~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~ 352 (670)
.+.+..+. +. .....++..+...|...|++++|...|++..+... .++ ..++..+...|...|++++|+.
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 98886542 21 22345788899999999999999999998764311 112 2378889999999999999999
Q ss_pred HHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 353 VLSDMKSL----GLC-PNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 353 l~~~m~~~----g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
.|++.... +.. ....++..+...+...|++++|..++++..+.
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99987752 111 11466778888899999999999999988763
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.19 E-value=2.9e-09 Score=111.00 Aligned_cols=231 Identities=9% Similarity=-0.060 Sum_probs=173.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC----CCHHHH
Q 005905 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYN--IK----GTPEVY 229 (670)
Q Consensus 160 li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~----~~~~~~ 229 (670)
....+...|++++|+..|++....... .+| ..++..+...|...|+++.|...+.+..+.. .. ....++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIF-VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 556778899999999999998763111 233 3567888889999999999999998876531 11 123578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CccHHHH
Q 005905 230 TIAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISY 299 (670)
Q Consensus 230 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~-~~~~~~~ 299 (670)
+.+...|...|++++|...|++..+.... ++ ..++..+..+|...|++++|...+++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 88899999999999999999988653111 12 247788889999999999999999988772 33 4456788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHhCCCCCC-HHHHHH
Q 005905 300 SSLMGACSNAKNWQKALELYEHMKSI----KLKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYSI 371 (670)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ 371 (670)
..+...|.+.|++++|...|++..+. +.+.....++.+...|...|+ +++|+.++++. +..|+ ...+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 99999999999999999999987643 111123335667778888888 77788777765 23343 345667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 005905 372 LLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 372 ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+...|...|++++|..+|++..+
T Consensus 345 la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 77889999999999999988765
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=5e-10 Score=112.49 Aligned_cols=241 Identities=12% Similarity=0.040 Sum_probs=171.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N 221 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-----~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 221 (670)
+..+|..+...|...|++++|+.+|+++.... .........+..+...|...|++++|...|+++.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 46778899999999999999999999998620 001223556778888999999999999999988764 2
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 005905 222 -IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK------GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--- 290 (670)
Q Consensus 222 -~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~--- 290 (670)
.+....++..+...|...|++++|...|++..+. +..| ....+..+...+...|++++|.++++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223567888999999999999999999998764 2222 3456788888999999999999999998764
Q ss_pred ---C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCC-------CHHHHHHHHHHHHhCCChhHHHH
Q 005905 291 ---G-ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-------LKP-------TVSTMNALITALCDGDQLPKTME 352 (670)
Q Consensus 291 ---~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~p-------~~~~~~~li~~~~~~g~~~~A~~ 352 (670)
+ .+....++..+...|...|++++|...|+++.+.. ..+ ....+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2 22335678889999999999999999999887521 111 11223333444556677777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 353 VLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 353 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
.+...... .+.+..++..+..+|.+.|++++|..+|++..+
T Consensus 266 ~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77776653 123456788888899999999999999988765
No 68
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.17 E-value=1e-09 Score=114.89 Aligned_cols=241 Identities=13% Similarity=-0.023 Sum_probs=185.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C
Q 005905 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-----HITIGALMKACANAGQVDRAREVYKMIHKY----N 221 (670)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~ 221 (670)
+.....+......+...|++++|+..|++.... .|+ ...+..+...+...|++++|...|++.... +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc
Confidence 455667778888999999999999999999875 333 356778888999999999999999887543 2
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCC-------------------
Q 005905 222 IK-GTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSALIDFAGHAGK------------------- 276 (670)
Q Consensus 222 ~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g~------------------- 276 (670)
.. ....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 11 12457888899999999999999999987653110 12 3477888889999999
Q ss_pred -hHHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCC
Q 005905 277 -VEAAFEILQEAKNQ----GIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGD 345 (670)
Q Consensus 277 -~~~A~~i~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g 345 (670)
+++|...+....+. +.. ....++..+...|...|++++|...|++..+... .++ ..+|..+...|...|
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 241 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 241 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 99999998876542 211 2245788899999999999999999998764210 122 347888999999999
Q ss_pred ChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 346 QLPKTMEVLSDMKSL----GLCPN-TITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 346 ~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
++++|+..|++.... +..+. ..++..+...+...|++++|...+++..+.
T Consensus 242 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 242 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 999999999987652 11111 457778888899999999999999988753
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.16 E-value=9.7e-10 Score=110.37 Aligned_cols=233 Identities=12% Similarity=0.074 Sum_probs=163.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHh------c---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----C
Q 005905 126 DCKLYTTLITTCAKSGKVDAMFE------N---------VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV-----H 185 (670)
Q Consensus 126 d~~~~~~li~~~~~~g~~~~~~~------~---------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-----~ 185 (670)
+..++..+...|...|+++++.. . ......++..+...|...|++++|...|++..... .
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 35678889999999999987554 0 12235678889999999999999999999987631 0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 005905 186 PVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------NI-KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK--- 255 (670)
Q Consensus 186 ~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 255 (670)
.......++..+...|...|++++|...|+++.+. +. +....++..+...|...|++++|..+|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11223567788889999999999999999988764 21 223467888999999999999999999998764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-------CCc-------cHHHHHHHHHHHHhcCCHHHHHH
Q 005905 256 ---GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG-------ISV-------GIISYSSLMGACSNAKNWQKALE 317 (670)
Q Consensus 256 ---g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~-------~~~-------~~~~~~~li~~~~~~g~~~~A~~ 317 (670)
+..| ...++..+..+|...|++++|...++++.+.. ..+ ....+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2222 34578888999999999999999999987631 111 12223333444445555666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 318 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.+....... ..+..+|..+...|.+.|++++|.+.|++..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666665432 33567788999999999999999999998765
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.16 E-value=8.2e-10 Score=111.89 Aligned_cols=237 Identities=13% Similarity=-0.007 Sum_probs=179.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-C
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-----HITIGALMKACANAGQVDRAREVYKMIHKY----NIK-G 224 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~ 224 (670)
..+......+...|++++|+.+|+++... .|+ ...+..+...+...|++++|.+.+++..+. +.. .
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 34555677888999999999999999875 333 356778888999999999999999887543 111 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHH
Q 005905 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGV-IPD----EVFLSALIDFAGHAGK--------------------VEA 279 (670)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~~~~g~--------------------~~~ 279 (670)
...++..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 245788899999999999999999998765311 112 3477788888999999 999
Q ss_pred HHHHHHHHHHC----CC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCChhH
Q 005905 280 AFEILQEAKNQ----GI-SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKL-KPT----VSTMNALITALCDGDQLPK 349 (670)
Q Consensus 280 A~~i~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~ 349 (670)
|...+.+..+. +. .....++..+...|...|++++|...|++..+... .++ ..++..+...|...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 99998876542 21 12245788889999999999999999998764210 112 3478888999999999999
Q ss_pred HHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 350 TMEVLSDMKSL----GLCP-NTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 350 A~~l~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
|...+++.... +..+ ...++..+...+...|++++|..+++++.+.
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999987652 1111 1456777888899999999999999988753
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=5.4e-09 Score=95.77 Aligned_cols=163 Identities=13% Similarity=0.056 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
..|..+...+...|++++|+..|+++... .+.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA---DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT---TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34555666677777777777777766543 12345556666666667777777777776666553 445566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH
Q 005905 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK 314 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 314 (670)
.|...|++++|...|+++.+... .+...+..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 66666666666666666655432 244555555555556666666666665555543 3334555555555555555555
Q ss_pred HHHHHHHHH
Q 005905 315 ALELYEHMK 323 (670)
Q Consensus 315 A~~~~~~m~ 323 (670)
|...|++..
T Consensus 163 A~~~~~~~~ 171 (186)
T 3as5_A 163 ALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.16 E-value=1.5e-09 Score=116.61 Aligned_cols=194 Identities=10% Similarity=-0.092 Sum_probs=123.5
Q ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005905 157 FNALITACGQSGAV-DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235 (670)
Q Consensus 157 ~~~li~~~~~~g~~-~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 235 (670)
|..+...|...|++ ++|++.|++..+.. +.+...|..+...|...|++++|.+.|+...+.. |+..++..+..+
T Consensus 105 ~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~ 179 (474)
T 4abn_A 105 LMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMV 179 (474)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHH
Confidence 33444445555555 56666665555431 1224455555566666666666666666655543 334555556666
Q ss_pred HHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCC---cc
Q 005905 236 CSQT---------GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHA--------GKVEAAFEILQEAKNQGIS---VG 295 (670)
Q Consensus 236 ~~~~---------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~--------g~~~~A~~i~~~m~~~~~~---~~ 295 (670)
|... |++++|...|++..+.... +...|..+..+|... |++++|...|++..+.. + .+
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 257 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSN 257 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGC
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccC
Confidence 6666 6666666666666655432 455666666666666 67777777777777653 2 46
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|++.+.++.
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~ 319 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7778888888888888888888888877654 2356677778888888888888887776653
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.14 E-value=4.1e-09 Score=96.62 Aligned_cols=162 Identities=10% Similarity=0.015 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
.+..+...+...|++++|...|+.+.+.. +.+..++..+...|...|++++|...++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34445555666666666666666555433 33455566666666666666666666666555432 24445555555555
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 005905 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (670)
..|++++|.+.++.+.+.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+...|...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555555443 3344455555555555555555555555554432 2234455555555555555555555
Q ss_pred HHHHHH
Q 005905 353 VLSDMK 358 (670)
Q Consensus 353 l~~~m~ 358 (670)
.+++..
T Consensus 166 ~~~~~~ 171 (186)
T 3as5_A 166 HFKKAN 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 74
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.08 E-value=8.5e-09 Score=109.96 Aligned_cols=299 Identities=13% Similarity=0.022 Sum_probs=197.5
Q ss_pred hcCCH---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhh-----hhHHHHHHHhhhCC-CCCHHHHHHHHHHHHcCCC
Q 005905 37 RQGRI---SECIDLLEDMERKGLLDMDKVYHARFFNVCKSQ-----KAIKEAFRFFKLVP-NPTLSTFNMLMSVCASSKD 107 (670)
Q Consensus 37 ~~g~~---~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~-~~~~~~y~~li~~~~~~g~ 107 (670)
..|+. ++|++.|++..+. .|... ..+..++... ++.++|+.+|++.. ..+...+..|...|...+.
T Consensus 47 ~~g~~~d~~~A~~~~~~A~~~--~~~A~---~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~ 121 (452)
T 3e4b_A 47 GTRDPAQIKQAEATYRAAADT--SPRAQ---ARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPH 121 (452)
T ss_dssp --------------------------CH---HHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGG
T ss_pred ccCCCCCHHHHHHHHHHHHhC--CHHHH---HHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCC
Confidence 45666 8999999998865 23222 2233322222 58899999998653 2233367777777776654
Q ss_pred HH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh--------cCCCCHHHHHHHHHHHHhcC---CHHHH
Q 005905 108 SE---GAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE--------NVKPDRVVFNALITACGQSG---AVDRA 173 (670)
Q Consensus 108 ~~---~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~--------~~~~~~~~~~~li~~~~~~g---~~~~A 173 (670)
.+ .+.+.+......|. ......|...|...+.++...+ ....+...+..|...|...| +.++|
T Consensus 122 ~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A 198 (452)
T 3e4b_A 122 SFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAEL 198 (452)
T ss_dssp GCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHH
Confidence 43 35555555555553 4456667777777775543222 12334448889999999999 99999
Q ss_pred HHHHHHHhhCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHH
Q 005905 174 FDVLAEMNAEVHPVDPDHITIGALMKACANA----GQVDRAREVYKMIHKYNIKGTPEVYTIAINC-C--SQTGDWEFAC 246 (670)
Q Consensus 174 ~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~ 246 (670)
++.|++....+ .++...+..+...|... +++++|.+.|+... .| ++..+..+... | ...+++++|.
T Consensus 199 ~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 199 LKQMEAGVSRG---TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp HHHHHHHHHTT---CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 99999998863 55666556677777554 79999999999887 33 45677777776 4 5689999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHH
Q 005905 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAG-----KVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALE 317 (670)
Q Consensus 247 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g-----~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 317 (670)
..|++..+.| +...+..|-..|. .| ++++|...|+... .| +...+..|..+|.. ..++++|..
T Consensus 272 ~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 343 (452)
T 3e4b_A 272 KYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALD 343 (452)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 9999999887 5667777777776 55 9999999999887 43 56777888888877 449999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHhCC
Q 005905 318 LYEHMKSIKLKPTVSTMNALITALCD----GDQLPKTMEVLSDMKSLG 361 (670)
Q Consensus 318 ~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 361 (670)
.|++..+.| +......|...|.. ..+.++|...|+...+.|
T Consensus 344 ~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 344 HLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 999998866 34455666666664 457888888888877766
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.08 E-value=6.8e-08 Score=99.98 Aligned_cols=275 Identities=11% Similarity=-0.022 Sum_probs=184.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 005905 96 NMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFD 175 (670)
Q Consensus 96 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 175 (670)
......+...|++++|...+++.+......+.... ..+++.+...|...|++++|..
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------~~~~~~l~~~~~~~g~~~~A~~ 74 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSR-----------------------IVATSVLGEVLHCKGELTRSLA 74 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHH-----------------------HHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHH-----------------------HHHHHHHHHHHHhcCcHHHHHH
Confidence 34445666789999999999888775322222111 1234555666777888888888
Q ss_pred HHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHH
Q 005905 176 VLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKY----NIK--G-TPEVYTIAINCCSQTGDWEF 244 (670)
Q Consensus 176 l~~~m~~~~~~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~ 244 (670)
.+++....... .++. .++..+...+...|++++|...+++..+. +.. | ...++..+...|...|++++
T Consensus 75 ~~~~al~~~~~-~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 75 LMQQTEQMARQ-HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 88876542100 1122 23556677788899999999999877553 221 2 23456677888899999999
Q ss_pred HHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc--cHHHHH----HHHHHHHhcCCHHH
Q 005905 245 ACSVYDDMTKKGVI----PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV--GIISYS----SLMGACSNAKNWQK 314 (670)
Q Consensus 245 A~~l~~~m~~~g~~----p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~--~~~~~~----~li~~~~~~g~~~~ 314 (670)
|...+++....... ....++..+...+...|++++|...+++.......+ ...... ..+..+...|++++
T Consensus 154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 99999887654321 123567778888889999999999999876531111 111111 23445778999999
Q ss_pred HHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCChhHHHHHHHHHHh----CCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 005905 315 ALELYEHMKSIKLKP---TVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPNTI-TYSILLVACERKDDVEVGL 386 (670)
Q Consensus 315 A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 386 (670)
|...+++.......+ ....+..+...+...|++++|...+++... .|..++.. .+..+..++...|+.++|.
T Consensus 234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 999998876543221 133567778889999999999999988754 23222332 5556667788999999999
Q ss_pred HHHHHHHH
Q 005905 387 MLLSQAKE 394 (670)
Q Consensus 387 ~~~~~m~~ 394 (670)
..+++...
T Consensus 314 ~~l~~al~ 321 (373)
T 1hz4_A 314 RVLLDALK 321 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987765
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.08 E-value=7.6e-09 Score=115.92 Aligned_cols=165 Identities=13% Similarity=0.055 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270 (670)
Q Consensus 191 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 270 (670)
...|+.+...|.+.|++++|++.|++..+.. +.+..+|+.+..+|.+.|++++|+..|++.++.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4456666666777777777777777666654 445666777777777777777777777776665433 45666677777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHH
Q 005905 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKT 350 (670)
Q Consensus 271 ~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 350 (670)
|...|++++|.+.|++..+.. +-+...|+.+..+|.+.|++++|.+.|++..+... -+...|..+..+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHH
Confidence 777777777777777766654 34566777777777777777777777777766542 2566777777777777777777
Q ss_pred HHHHHHHHh
Q 005905 351 MEVLSDMKS 359 (670)
Q Consensus 351 ~~l~~~m~~ 359 (670)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766543
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=3.5e-08 Score=102.51 Aligned_cols=307 Identities=10% Similarity=0.030 Sum_probs=168.9
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCchHHH-HHHHHHH--HhhhhhHH------------HHHHHhhhC
Q 005905 25 VSEQLHSYNRLIRQGRISECIDLLEDMERKG--LLDMDKVY-HARFFNV--CKSQKAIK------------EAFRFFKLV 87 (670)
Q Consensus 25 ~~~~~~~~~~l~~~g~~~~A~~l~~~m~~~g--~~~~~~~~-~~~l~~~--~~~~~~~~------------~A~~~~~~~ 87 (670)
+...+.-|-..+..+++++|.++++++...- +..+.... +..++.. ..-.+.+. ++++-.+..
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 4445555777789999999999999986532 11122211 1111111 11111111 222222222
Q ss_pred CCC-C-HH---HHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHH
Q 005905 88 PNP-T-LS---TFNMLMSVCASSKDSEGAFQVLRLVQEAGL-KADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALI 161 (670)
Q Consensus 88 ~~~-~-~~---~y~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li 161 (670)
..+ + .. .|......+...|++++|+..|++..+.-. .+|... ...++..+.
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------------------~a~~~~~lg 148 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE-----------------------KAEFHFKVA 148 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-----------------------HHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHH-----------------------HHHHHHHHH
Confidence 211 1 11 223344566788999999999988875421 122110 123456677
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHH
Q 005905 162 TACGQSGAVDRAFDVLAEMNAEVHPV---DP-DHITIGALMKACANAGQVDRAREVYKMIHKY----NIK-GTPEVYTIA 232 (670)
Q Consensus 162 ~~~~~~g~~~~A~~l~~~m~~~~~~~---~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~l 232 (670)
..|...|++++|+..+.+........ .+ ...++..+...|...|++++|.+.|.+..+. +.+ ....+++.+
T Consensus 149 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 228 (378)
T 3q15_A 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI 228 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77788888888888877765421000 11 1346667777888888888888888776552 111 112456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCccHHHHHHHH
Q 005905 233 INCCSQTGDWEFACSVYDDMTK-----KGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----ISVGIISYSSLM 303 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~----~~~~~~~~~~li 303 (670)
..+|...|++++|...|++..+ .... ...++..+..+|.+.|++++|...+++..+.. -+.....++.+.
T Consensus 229 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~ 307 (378)
T 3q15_A 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQ 307 (378)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777888887777777665 3222 24556666666666777777776666665431 112233445555
Q ss_pred HHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 304 GACSNAKN---WQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 304 ~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
..|...++ +.+|...+++.. ..| ....+..+...|...|++++|...|++..
T Consensus 308 ~ly~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 308 AVYKETVDERKIHDLLSYFEKKN---LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHSSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555565 555555555421 111 12234445555666666666666665543
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=6.1e-08 Score=100.72 Aligned_cols=231 Identities=11% Similarity=-0.075 Sum_probs=171.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC----CCHHH
Q 005905 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYN--IK----GTPEV 228 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~----~~~~~ 228 (670)
.....+...|++++|+..|++....... .+| ..++..+...|...|+++.|...+.+..+.. .. ....+
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPF-VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGG-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3455677899999999999998764111 233 3467778889999999999999998876531 11 12457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCccHHH
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIIS 298 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~-----~~~~~~~~~ 298 (670)
++.+..+|...|++++|.+.|++..+. +..+ ...++..+..+|...|++++|...+.+..+ .. +....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHH
Confidence 888999999999999999999887653 1111 234677888899999999999999999877 43 334778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHhCCCCCC-HHHHH
Q 005905 299 YSSLMGACSNAKNWQKALELYEHMKSIK----LKPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPN-TITYS 370 (670)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~ 370 (670)
+..+...|.+.|++++|...|++..+.. .+.....++.+...|...++ +.+|+..+++. +..|+ ...+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHH
Confidence 8899999999999999999999887532 12224456666667777788 77788777762 23333 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 371 ILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 371 ~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
.+...|...|++++|...|++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 677789999999999999987764
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.01 E-value=1.2e-08 Score=114.26 Aligned_cols=165 Identities=15% Similarity=0.114 Sum_probs=148.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTI 231 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 231 (670)
+..+|+.|...|.+.|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.|++..+.+ +.+..+|+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4678999999999999999999999999874 454 6789999999999999999999999999876 567899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~ 311 (670)
+..+|.+.|++++|++.|++.++.... +...|..+..+|...|++++|.+.|++..+.. +-+...+..+..+|...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc
Confidence 999999999999999999999887654 67899999999999999999999999999875 4567889999999999999
Q ss_pred HHHHHHHHHHHHh
Q 005905 312 WQKALELYEHMKS 324 (670)
Q Consensus 312 ~~~A~~~~~~m~~ 324 (670)
+++|.+.|++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999888764
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.01 E-value=1.4e-06 Score=96.47 Aligned_cols=364 Identities=8% Similarity=0.004 Sum_probs=194.7
Q ss_pred hHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhh---HHHHHHHhhhCC--C---CCHHHH
Q 005905 28 QLHSYNRLI----RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA---IKEAFRFFKLVP--N---PTLSTF 95 (670)
Q Consensus 28 ~~~~~~~l~----~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~--~---~~~~~y 95 (670)
+...|..|+ +.+.++.+..+|+++...- |....+-...+..-.+.+. ++.+..+|++.. . |++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 344555555 5789999999999999875 6666555556666677788 999999998753 2 888888
Q ss_pred HHHHHHHHcCCCH--------HHHHHHHHHHHH-cCC-CCC-HHHHHHHHHHHHhc---------CCHHH---HHh---c
Q 005905 96 NMLMSVCASSKDS--------EGAFQVLRLVQE-AGL-KAD-CKLYTTLITTCAKS---------GKVDA---MFE---N 149 (670)
Q Consensus 96 ~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~pd-~~~~~~li~~~~~~---------g~~~~---~~~---~ 149 (670)
..-+....+.++. +...++|+..+. .|. .++ ...|...+...... ++++. +++ .
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888766554443 334578877665 355 454 45676666544321 12222 222 1
Q ss_pred CCC-C-HHHHH---HHHHHHH----------hcCCHHHHHHHHHHHhhCCCCCC---------------C-----C---H
Q 005905 150 VKP-D-RVVFN---ALITACG----------QSGAVDRAFDVLAEMNAEVHPVD---------------P-----D---H 191 (670)
Q Consensus 150 ~~~-~-~~~~~---~li~~~~----------~~g~~~~A~~l~~~m~~~~~~~~---------------p-----d---~ 191 (670)
++. + ..+|. ..-..+. ...+++.|...+.++.....++. | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 111 1 12222 1111110 01123334444443221100110 1 1 1
Q ss_pred HHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHH
Q 005905 192 ITIGALMKACANAG-------QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC-SVYDDMTKKGVIPDEVF 263 (670)
Q Consensus 192 ~t~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t 263 (670)
..|...+.---..+ ..+.+..+|+++.... +.+...|-..+..+.+.|+.++|. .+|++..... +.+...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHH
Confidence 23444443322221 1234455666666543 445666666666666666666665 7776666532 234455
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC---------Cc------------cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 264 LSALIDFAGHAGKVEAAFEILQEAKNQGI---------SV------------GIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~i~~~m~~~~~---------~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
|...+....+.|+++.|.++|+.+.+... .| ...+|...+....+.|+.+.|+.+|...
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55666666666777777777766654310 02 1235666666666667777777777766
Q ss_pred HhCCCCCCHHHHHHHHHHHHhC-CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 323 KSIKLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 323 ~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
.+.........|-..+..-.+. ++.+.|..+|+...+. ++-+...+...+......|+.+.|..+|++.....
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 6541111222232222222233 3467777777766654 22344444455555566677777777777666543
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.01 E-value=3.9e-08 Score=94.01 Aligned_cols=100 Identities=12% Similarity=0.022 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
|...|......|...|++++|+..|++..... -.++...+..+..++...|++++|.+.|+...+.+ +.+..+|..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 34445555555555555555555555554431 01344444444555555555555555555555433 2334445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 005905 233 INCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
..+|...|++++|...|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~ 105 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA 105 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 55555555555555555555443
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.99 E-value=6.8e-08 Score=92.33 Aligned_cols=195 Identities=16% Similarity=0.075 Sum_probs=135.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005905 189 PDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALI 268 (670)
Q Consensus 189 pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 268 (670)
.|...+......+...|++++|...|+...+...+++..++..+..+|...|++++|+..|++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3456777778888888888888888888887763367777777888888888888888888888876543 556777788
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 005905 269 DFAGHAGKVEAAFEILQEAKNQGISVGI-------ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT---VSTMNALI 338 (670)
Q Consensus 269 ~~~~~~g~~~~A~~i~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li 338 (670)
.+|...|++++|...+++..+.. +.+. .+|..+...+...|++++|...|++..+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 88888888888888888887754 2334 45777777778888888888888887765 343 45666666
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 339 TALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
..|... +..+++++...+ ..+...|.... ....+.+++|...|++..+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 666543 334455555432 23344444333 23345677788888777764
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.97 E-value=4.8e-09 Score=103.42 Aligned_cols=229 Identities=11% Similarity=-0.017 Sum_probs=154.6
Q ss_pred hcCCHHHHHHHHHHHhhC-----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHH
Q 005905 166 QSGAVDRAFDVLAEMNAE-----VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------NI-KGTPEVYTIAI 233 (670)
Q Consensus 166 ~~g~~~~A~~l~~~m~~~-----~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~~~~~~~~~li 233 (670)
..|++++|+.+|++.... +...+....++..+...|...|++++|...|+++.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 445555555555554431 0011223567788889999999999999999988764 21 22356788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C-CCccHHHH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKK------G-VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ------G-ISVGIISY 299 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~------g-~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~------~-~~~~~~~~ 299 (670)
..|...|++++|...|.+..+. . .+....++..+...|...|++++|...++++.+. + .+....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999998764 1 1223567888889999999999999999998765 1 12345688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-------CC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHH---hCC-CCC-CH
Q 005905 300 SSLMGACSNAKNWQKALELYEHMKSI-------KL-KPTVSTMNALITALCDGDQLPKTMEVLSDMK---SLG-LCP-NT 366 (670)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~-------~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g-~~p-~~ 366 (670)
..+...|...|++++|...|++..+. .. ......|..+...+...+....+..+..... ..+ ..| +.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 89999999999999999999988753 11 1223344444444444444333333221111 111 112 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 367 ITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 367 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
.++..+..+|...|++++|..+|++..+
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5677788889999999999999988765
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.95 E-value=8.7e-09 Score=101.56 Aligned_cols=206 Identities=12% Similarity=0.037 Sum_probs=145.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEV-----HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY------N 221 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-----~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 221 (670)
...+|..+...|...|++++|+..|++..... ........++..+...|...|++++|.+.|.++.+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 46678899999999999999999999987631 011223557888899999999999999999988764 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---
Q 005905 222 -IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK------GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--- 290 (670)
Q Consensus 222 -~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~--- 290 (670)
.+....++..+...|...|++++|...|++..+. +..| ...++..+..+|...|++++|...++++.+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1233567888999999999999999999998765 1122 3467888999999999999999999998763
Q ss_pred ----CCC-ccHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 291 ----GIS-VGIISYSSLMGACSNAKN------WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 291 ----~~~-~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
... .....+..+...+...+. +..+...++.... .......++..+...|...|++++|..+|++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 122333333333333332 3333333332221 1122356788899999999999999999998765
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.90 E-value=2.8e-07 Score=95.34 Aligned_cols=235 Identities=9% Similarity=-0.017 Sum_probs=168.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HH
Q 005905 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI----TIGALMKACANAGQVDRAREVYKMIHKYNI-KGTP----EV 228 (670)
Q Consensus 158 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~----t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~----~~ 228 (670)
......+...|++++|...+++..... + ..+.. .+..+...+...|++++|...+++...... ..+. .+
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~-~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEEL-P-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-C-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-C-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344456778999999999999987752 1 11222 456667788899999999999988765311 1122 33
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC----ccHH
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKK----GVI--P-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQGIS----VGII 297 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~----~~~~ 297 (670)
++.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+.+..+.... ....
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 567788899999999999999988653 222 2 2345666788899999999999999998764321 1346
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhCCChhHHHHHHHHHHhCCCCC---CHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPT-VSTMN-----ALITALCDGDQLPKTMEVLSDMKSLGLCP---NTIT 368 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t 368 (670)
++..+...+...|++++|...+++.......++ ...|. ..+..+...|++++|...+++.......+ ....
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 788888999999999999999998764311111 11222 23344779999999999999877633211 1335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 369 YSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 369 ~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+..+...+...|++++|...++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66777889999999999999988765
No 86
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.88 E-value=6.3e-07 Score=88.33 Aligned_cols=183 Identities=16% Similarity=0.117 Sum_probs=116.0
Q ss_pred HHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 173 AFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI-KGTPEVYTIAINCCSQTGDWEFACSVYDD 251 (670)
Q Consensus 173 A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 251 (670)
|+..|++....+ .++..++..+..++...|++++|++++.+....+. ..+...+..++..|.+.|+.+.|.+.+++
T Consensus 85 a~~~l~~l~~~~---~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 NIEELENLLKDK---QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CCHHHHHTTTTS---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 677777776542 45555666777778888888888888877766542 23566777788888888888888888888
Q ss_pred HHHCCCCC-----CHHHHHHHHHHHH--hcC--ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 252 MTKKGVIP-----DEVFLSALIDFAG--HAG--KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 252 m~~~g~~p-----~~~t~~~li~~~~--~~g--~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
|.+. .| +..+...+..++. ..| +..+|..+|+++.+.. |+......++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8765 34 2455555555532 223 7778888888876543 33233333444677778888888887765
Q ss_pred HhCC---------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 323 KSIK---------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 323 ~~~~---------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
.+.. -+.|..+.-.+|......|+ +|.+++.++.+. .|+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h 286 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH 286 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence 5320 02255555445555555565 677777777763 4543
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.87 E-value=1.5e-07 Score=80.67 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=7.4
Q ss_pred HHHHHHhCCChhHHHHHHHH
Q 005905 337 LITALCDGDQLPKTMEVLSD 356 (670)
Q Consensus 337 li~~~~~~g~~~~A~~l~~~ 356 (670)
+...|...|++++|...|++
T Consensus 109 la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 109 LGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHH
Confidence 33333333333333333333
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.86 E-value=1.4e-07 Score=80.86 Aligned_cols=128 Identities=19% Similarity=0.174 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
|..+...+...|++++|..+|+.+.+.. +.+..++..+...+...|++++|..+|+++.+.+.. +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 4444555555555555555555555443 334455555555555555555555555555544322 34445555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 274 ~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
.|++++|.+.++.+.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555443 23344455555555555555555555555443
No 89
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.84 E-value=4.1e-05 Score=84.71 Aligned_cols=363 Identities=13% Similarity=0.078 Sum_probs=239.7
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC---CCCHHHHHHHHHHHHcCCC---HHHHHHH
Q 005905 41 ISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP---NPTLSTFNMLMSVCASSKD---SEGAFQV 114 (670)
Q Consensus 41 ~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~y~~li~~~~~~g~---~~~A~~~ 114 (670)
..+-+..|++.+..+ |.+......++..+.+.+.++.+..+|+.+. +.....|..-+..-.+.++ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 445666778887777 7777777778888888889999999988763 4567788888888888888 9999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHHHhcCCH-----------HHHHh------cC-CC-CHHHHHHHHHHHH---------
Q 005905 115 LRLVQEAG-LKADCKLYTTLITTCAKSGKV-----------DAMFE------NV-KP-DRVVFNALITACG--------- 165 (670)
Q Consensus 115 ~~~m~~~g-~~pd~~~~~~li~~~~~~g~~-----------~~~~~------~~-~~-~~~~~~~li~~~~--------- 165 (670)
|++.+... ..|++..|..-+....+.++. ..+|+ +. .+ +...|...+.-..
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 99998863 148888888777665554432 13444 34 44 4578888876543
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCCCHHHHHH---HHHHH----------HHcCCHHHHHHHHHHHHHc--CC----C---
Q 005905 166 QSGAVDRAFDVLAEMNAEVHPVDPDHITIGA---LMKAC----------ANAGQVDRAREVYKMIHKY--NI----K--- 223 (670)
Q Consensus 166 ~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~---li~~~----------~~~g~~~~A~~~~~~m~~~--~~----~--- 223 (670)
..++++.+..+|++.... +...-..+|.. +-..+ -...+++.|...+.++... ++ +
T Consensus 206 eq~~~~~~R~iy~raL~i--P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQ--PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHTTS--CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHhHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 345678899999999852 22111223322 21111 0112345566666554321 11 1
Q ss_pred --------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005905 224 --------G-----T---PEVYTIAINCCSQTG-------DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280 (670)
Q Consensus 224 --------~-----~---~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 280 (670)
| + ...|...+..--..+ ..+.+..+|++.+..-.. +...|...+..+...|+.++|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHH
Confidence 1 0 245666665544333 134456778888776433 778888888888888999999
Q ss_pred H-HHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHH
Q 005905 281 F-EILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK---------LKPT------------VSTMNALI 338 (670)
Q Consensus 281 ~-~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~li 338 (670)
. ++|+..... ++.+...|-..+....+.|+++.|.++|+.+.+.. ..|+ ...|...+
T Consensus 363 ~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 6 999999875 35677788888999999999999999999887531 0132 34688888
Q ss_pred HHHHhCCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 339 TALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSILLVACER-KDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (670)
....+.|..+.|..+|.+..+. +. +....|......-.+ .++.+.|.++|+...+. ..-+...+...++..
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe 514 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFL 514 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 8888889999999999999875 21 122333322222223 35589999999988875 223444444555543
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.80 E-value=1.2e-07 Score=94.58 Aligned_cols=129 Identities=9% Similarity=0.003 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhc-CChHHHHHHHHHHHHCCC----Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----
Q 005905 263 FLSALIDFAGHA-GKVEAAFEILQEAKNQGI----SV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTV----- 331 (670)
Q Consensus 263 t~~~li~~~~~~-g~~~~A~~i~~~m~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----- 331 (670)
++..+..+|... |++++|...|++..+... .. ...+++.+...|.+.|++++|...|++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 455555556664 666666666665544210 00 0345666677777777777777777776654322211
Q ss_pred -HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 005905 332 -STMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT------ITYSILLVACE--RKDDVEVGLMLLSQAK 393 (670)
Q Consensus 332 -~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~ll~a~~--~~g~~~~a~~~~~~m~ 393 (670)
..|..+..+|...|++++|+..|++..+ +.|+. ..+..++.+|. ..+++++|+..|+.+.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 1456666667777777777777777654 23321 12334455553 3456777777765443
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.79 E-value=1.1e-07 Score=95.05 Aligned_cols=160 Identities=11% Similarity=0.023 Sum_probs=103.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCc-cHHHHHHHHH
Q 005905 235 CCSQTGDWEFACSVYDDMTKK----GVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GISV-GIISYSSLMG 304 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~~~-~~~~~~~li~ 304 (670)
.|...|++++|...|.+..+. |-.++ ..+|..+..+|...|++++|...+++..+. |-.. -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666666555432 21111 345666666666666666666666655432 2111 1356778888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH------HHHHHH
Q 005905 305 ACSNA-KNWQKALELYEHMKSIKLK-PT----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT------ITYSIL 372 (670)
Q Consensus 305 ~~~~~-g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~------~t~~~l 372 (670)
+|... |++++|...|++..+.... .+ ..+|+.+...|.+.|++++|+..|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88886 9999999999887653111 01 356888888999999999999999998874322211 156667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005905 373 LVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 373 l~a~~~~g~~~~a~~~~~~m~~ 394 (670)
..++...|++++|...|++..+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7778888999999999987765
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.75 E-value=3.7e-07 Score=85.98 Aligned_cols=74 Identities=11% Similarity=0.053 Sum_probs=33.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALC 342 (670)
Q Consensus 267 li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 342 (670)
+..+|.+.|++++|...++...+.. +-+...+..+..+|...|++++|...|++..+.. +.+..+|..+...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3344444444444444444444433 2334444445555555555555555555544433 123444444444443
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.72 E-value=7.1e-07 Score=84.00 Aligned_cols=185 Identities=12% Similarity=0.032 Sum_probs=86.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005905 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235 (670)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 235 (670)
+-.....+...|++++|+..|++.... .|+. ..|.. ..... ........++.+..+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~-----~~~~~--------------~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL----NIDRTEMYYW-----TNVDK--------------NSEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CHHHHHHHHH-----HHSCT--------------TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCChHHHHH-----hhhcc--------------hhhhhHHHHHHHHHH
Confidence 334445667778888888888887763 4442 22322 00000 000001112224555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCC--HH
Q 005905 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKN--WQ 313 (670)
Q Consensus 236 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~ 313 (670)
|.+.|++++|...|++.++.... +...+..+..++...|++++|...|+++.+.. +.+..++..+...|...|. .+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence 55555555555555555554332 44455555555555555555555555555543 3344455555555444332 23
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 005905 314 KALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370 (670)
Q Consensus 314 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 370 (670)
.+...|..... ..|....+..+..++...|++++|+..|++..+ +.|+.....
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 33444444331 111122223333444445566666666666554 345544433
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.72 E-value=3.4e-07 Score=89.47 Aligned_cols=186 Identities=11% Similarity=0.021 Sum_probs=121.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNI--KGT 225 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~ 225 (670)
.+...+-.+...+.+.|++++|+..|+++... .|+ ...+..+..+|.+.|++++|...|+...+... +..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY----GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG----CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 35666777778888899999999999998875 333 45677788888899999999999998887642 122
Q ss_pred HHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHH
Q 005905 226 PEVYTIAINCCSQ--------TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII 297 (670)
Q Consensus 226 ~~~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~ 297 (670)
..++..+..++.. .|++++|...|++..+.... +......+. .+..+... -..
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~--------------~~~~~~~~----~~~ 149 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQ--------------KIRELRAK----LAR 149 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHH--------------HHHHHHHH----HHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHH--------------HHHHHHHH----HHH
Confidence 4567777888888 88999999999988876432 111221110 00000000 011
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhC----------CChhHHHHHHHHHHhC
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKP--TVSTMNALITALCDG----------DQLPKTMEVLSDMKSL 360 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~ 360 (670)
.+..+...|.+.|++++|...|+++.+..+.. ....+..+..+|... |++++|+..|++..+.
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 24456667777777777777777776542211 234566666666654 6777777777777663
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.70 E-value=1.1e-06 Score=85.74 Aligned_cols=188 Identities=11% Similarity=0.021 Sum_probs=118.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHH
Q 005905 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD-EVFL 264 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~-~~t~ 264 (670)
+...+......+.+.|++++|...|+.+.+.. +.+ ..++..+..+|.+.|++++|...|++..+.... |. ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34555566667777777777777777777654 333 566677777777777777777777777765321 11 3345
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005905 265 SALIDFAGH--------AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNA 336 (670)
Q Consensus 265 ~~li~~~~~--------~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 336 (670)
..+..++.. .|++++|...|+.+.+... .+.....++ ..+..+.. .....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~--------------~~~~~~~~----~~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDAT--------------QKIRELRA----KLARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHH--------------HHHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHH--------------HHHHHHHH----HHHHHHHH
Confidence 555556666 6677777777776665431 111111111 11111110 00112456
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCH
Q 005905 337 LITALCDGDQLPKTMEVLSDMKSLGLCPN----TITYSILLVACERK----------DDVEVGLMLLSQAKEDGVIPNL 401 (670)
Q Consensus 337 li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~g~~p~~ 401 (670)
+...|...|++++|+..|++..+. .|+ ...+..+..++... |++++|...|+.+.+.. |+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~ 228 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDS 228 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCC
Confidence 788899999999999999999874 343 34666777777765 89999999999988753 544
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.68 E-value=1.8e-07 Score=105.04 Aligned_cols=174 Identities=13% Similarity=0.016 Sum_probs=123.7
Q ss_pred HhcCCHHHHHHHHHHHh--------hCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 165 GQSGAVDRAFDVLAEMN--------AEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236 (670)
Q Consensus 165 ~~~g~~~~A~~l~~~m~--------~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (670)
...|++++|++.|++.. .. -+.+...+..+..++...|++++|.+.|+++.+.+ +.+...|..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD---FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C---CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc---cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHH
Confidence 67888888988888887 32 12344567777788888888888888888887765 55677888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 005905 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKAL 316 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 316 (670)
.+.|++++|...|++..+.... +...+..+..+|.+.|++++ .+.|++..+.+ +.+...|..+..+|.+.|++++|.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888776543 55667777777778888877 77777777665 445667777777788888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 005905 317 ELYEHMKSIKLKPTVSTMNALITALCDGDQ 346 (670)
Q Consensus 317 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 346 (670)
+.|++..+... -+...|..+..++...++
T Consensus 555 ~~~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHHHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 77777665431 134556666666655444
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.65 E-value=3.6e-07 Score=83.43 Aligned_cols=161 Identities=12% Similarity=0.091 Sum_probs=96.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AG 272 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~ 272 (670)
+......+...|++++|...|+...+.. +.+...+..+..+|.+.|++++|...|++...... +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 3344556666777777777776665543 44566677777777777777777777776655432 33322221111 11
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChhHHH
Q 005905 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKP-TVSTMNALITALCDGDQLPKTM 351 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 351 (670)
..+....|...++...+.. +.+...+..+...|...|++++|...|+++.+..+.+ +...+..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122223566666666543 3346666777777777777777777777776654322 2456667777777777777777
Q ss_pred HHHHHHH
Q 005905 352 EVLSDMK 358 (670)
Q Consensus 352 ~l~~~m~ 358 (670)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776544
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.63 E-value=1.6e-05 Score=79.04 Aligned_cols=225 Identities=10% Similarity=-0.045 Sum_probs=176.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCCCH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--
Q 005905 162 TACGQSGAVDRAFDVLAEMNAEVHPVDPDH-ITIGALMKACANAG--QVDRAREVYKMIHKYNIKGTPEVYTIAINCC-- 236 (670)
Q Consensus 162 ~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~-~t~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~-- 236 (670)
.........++|+++++.+... .|+. ..|+.--..+...| +++++++.++.+...+ +-+..+|+.--..+
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~----nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINE----LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHH----CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHH
Confidence 3334444557999999999874 5664 45676677777788 9999999999999876 55667777654444
Q ss_pred --Hhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 237 --SQT---GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE--AAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 237 --~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
... +++++++.+++++.+...+ |...|..-.-++.+.|.++ ++++.++.+.+.. +-|...|+.-...+.+.
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSK 193 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSS
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 555 7899999999999988765 7788877777778888887 9999999999876 56777888777777777
Q ss_pred CC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 005905 310 KN------WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK-TMEVLSDMKSLG--LCPNTITYSILLVACERKD 380 (670)
Q Consensus 310 g~------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~g 380 (670)
+. ++++.+.++++....+ -|...|+.+-..+.+.|+..+ +.++..++...+ -..+...+..+..++.+.|
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred cccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 76 8999999998887764 489999999999999888555 445666655432 2357788888999999999
Q ss_pred CHHHHHHHHHHHHH
Q 005905 381 DVEVGLMLLSQAKE 394 (670)
Q Consensus 381 ~~~~a~~~~~~m~~ 394 (670)
+.++|.++++.+.+
T Consensus 273 ~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 273 KYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999876
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.60 E-value=3.9e-07 Score=102.30 Aligned_cols=173 Identities=12% Similarity=0.023 Sum_probs=133.8
Q ss_pred HHcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 202 ANAGQVDRAREVYKMIH--------KYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 202 ~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
...|++++|.+.|++.. +.. +.+...+..+..+|.+.|++++|...|++..+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67888999999998887 433 456678888888899999999999999988876543 66788888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 005905 274 AGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEV 353 (670)
Q Consensus 274 ~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 353 (670)
.|++++|.+.|++..+.. +.+...+..+..+|.+.|++++ .+.|++..+.. +.+...|..+..+|.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999888765 4456778888888999999988 88888887765 33677888888889999999999999
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 005905 354 LSDMKSLGLCPN-TITYSILLVACERKDD 381 (670)
Q Consensus 354 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 381 (670)
|++..+ +.|+ ...+..+..++...+.
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 888776 3565 3455556666655444
No 100
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.60 E-value=3.2e-06 Score=80.52 Aligned_cols=188 Identities=11% Similarity=-0.008 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTP--EVY 229 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~ 229 (670)
+...+..+...+.+.|++++|+..|+++.... +-.|. ...+..+..++.+.|++++|...|+.+.+....... .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence 34456667778889999999999999998752 11121 346777888999999999999999998876522111 244
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005905 230 TIAINCCSQ------------------TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291 (670)
Q Consensus 230 ~~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~ 291 (670)
..+..++.+ .|++++|...|+++++.... +.......... ..+...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH----
Confidence 444444443 46777777777777765322 11111111100 0000000
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 005905 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSL 360 (670)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 360 (670)
......+...|.+.|++++|...|+++.+..+... ...+..+..+|.+.|+.++|.+.++.+...
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 01123566788899999999999999887532211 256888899999999999999999988875
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.59 E-value=4.8e-06 Score=78.50 Aligned_cols=175 Identities=14% Similarity=0.077 Sum_probs=87.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHH
Q 005905 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG----KVEAAFEILQ 285 (670)
Q Consensus 210 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g----~~~~A~~i~~ 285 (670)
|.+.|++..+.| ++..+..+-..|...+++++|...|++..+.| +...+..|-..|.. + +.++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 34445555555555555555555555555443 33344444444444 3 5555555555
Q ss_pred HHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----CCChhHHHHHHHH
Q 005905 286 EAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLK-PTVSTMNALITALCD----GDQLPKTMEVLSD 356 (670)
Q Consensus 286 ~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~l~~~ 356 (670)
...+.| +...+..|..+|.. .+++++|.+.|++..+.+.. .+...+..|-..|.. .++.++|+..|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 555443 34444555555554 55666666666655544311 014555555555555 5556666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 005905 357 MKSLGLCPNTITYSILLVACERK-D-----DVEVGLMLLSQAKEDG 396 (670)
Q Consensus 357 m~~~g~~p~~~t~~~ll~a~~~~-g-----~~~~a~~~~~~m~~~g 396 (670)
..+. ..+...+..|-..|... | +.++|..+|+...+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5553 12223344444444322 2 5666666666666555
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.59 E-value=3.1e-07 Score=81.44 Aligned_cols=143 Identities=8% Similarity=-0.024 Sum_probs=93.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT 239 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 239 (670)
...+...|++++|+..|...... .|+ ...+..+...|.+.|++++|.+.|++..+.+ +.+..+|..+..+|.+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~----~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS----PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS----HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHcChHHHHHHHHHHhccc----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34455567778888877776543 333 3345566777778888888888887777765 55677777777778888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHHHHCCCCccHHHHHHHHHHHHhcC
Q 005905 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEI-LQEAKNQGISVGIISYSSLMGACSNAK 310 (670)
Q Consensus 240 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i-~~~m~~~~~~~~~~~~~~li~~~~~~g 310 (670)
|++++|...|++..+.... +...+..+...|.+.|+.++|.+. ++...+.. +-+..+|......+...|
T Consensus 79 ~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred CchHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 8888888888777776543 566677777777777776655443 46665543 334556665555555554
No 103
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.58 E-value=2.7e-06 Score=83.77 Aligned_cols=180 Identities=12% Similarity=0.006 Sum_probs=126.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005905 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PDEVFLSALIDFAGHAGKVEAAFEILQEAK 288 (670)
Q Consensus 210 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~i~~~m~ 288 (670)
|...|++....+ +++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.++++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566777766654 455666678888888899999999999888766542 255677788888999999999999999987
Q ss_pred HCCCCc-----cHHHHHHHHHH--HHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 289 NQGISV-----GIISYSSLMGA--CSN--AKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 289 ~~~~~~-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+. .| +..+...|..+ ... .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 34 24444555555 222 33889999999998754 35534444455588888999999999987654
Q ss_pred C-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 360 L-----GL---CP-NTITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 360 ~-----g~---~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
. .. .| |..++..++......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 2 11 14 45556566666666776 7888888888753
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.57 E-value=1.4e-06 Score=95.66 Aligned_cols=154 Identities=12% Similarity=-0.038 Sum_probs=103.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 005905 167 SGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFAC 246 (670)
Q Consensus 167 ~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 246 (670)
.|++++|++.|++..+.. +.+...+..+...+...|++++|.+.|++..+.. +.+..+|..+..+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467788888888876541 2346677777888888888888888888887765 556778888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 005905 247 SVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---KNWQKALELYEHMK 323 (670)
Q Consensus 247 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 323 (670)
+.|++..+.... +...+..+..+|...|++++|.+.+++..+.. +.+...+..+...|... |++++|.+.|++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888888776533 56777777788888888888888888877764 44567777777888887 88888888888777
Q ss_pred hCC
Q 005905 324 SIK 326 (670)
Q Consensus 324 ~~~ 326 (670)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 654
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.57 E-value=1.4e-06 Score=95.78 Aligned_cols=151 Identities=10% Similarity=-0.093 Sum_probs=69.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005905 205 GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL 284 (670)
Q Consensus 205 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~ 284 (670)
|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.... +...+..+..+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44555555555554433 334455555555555555555555555555544322 3445555555555555555555555
Q ss_pred HHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CChhHHHHHHHHHHh
Q 005905 285 QEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDG---DQLPKTMEVLSDMKS 359 (670)
Q Consensus 285 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~ 359 (670)
++..+.. +.+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+...|... |+.++|.+.|++..+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 5555443 2334455555555555555555555555554433 12344555555555555 555555555555544
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.56 E-value=5.7e-06 Score=77.96 Aligned_cols=178 Identities=14% Similarity=0.049 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHH
Q 005905 171 DRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG----DWEFAC 246 (670)
Q Consensus 171 ~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~ 246 (670)
.+|++.|++..+. -+...+..+...|...+++++|.+.|++..+.+ ++..+..|-..|.. + ++++|.
T Consensus 3 ~eA~~~~~~aa~~-----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 3 TEPGSQYQQQAEA-----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp -CTTHHHHHHHHT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred chHHHHHHHHHHC-----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 3567788887764 356778888888888999999999999988865 46778888888877 6 899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCC-ccHHHHHHHHHHHHh----cCCHHHHHH
Q 005905 247 SVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAFEILQEAKNQGIS-VGIISYSSLMGACSN----AKNWQKALE 317 (670)
Q Consensus 247 ~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~i~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~ 317 (670)
..|++..+.| +...+..|-..|.. .+++++|.+.|+...+.+.. .+...+..|..+|.. .+++++|..
T Consensus 74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999998776 55677777777776 78999999999998887632 126778888888888 889999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhC-C-----ChhHHHHHHHHHHhCCC
Q 005905 318 LYEHMKSIKLKPTVSTMNALITALCDG-D-----QLPKTMEVLSDMKSLGL 362 (670)
Q Consensus 318 ~~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~l~~~m~~~g~ 362 (670)
.|++..+. ..+...+..|...|... | +.++|+..|++..+.|.
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99998876 23555777787777754 3 88999999998887663
No 107
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.54 E-value=7.7e-06 Score=77.82 Aligned_cols=185 Identities=8% Similarity=-0.021 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 005905 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE--VFLSAL 267 (670)
Q Consensus 192 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~l 267 (670)
..+..+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|+++.+....... ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 455566777889999999999999988754221 1357788889999999999999999999876543221 133333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------------
Q 005905 268 IDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVS--------------- 332 (670)
Q Consensus 268 i~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------------- 332 (670)
..++...+.. . ...|..+...+...|++++|...|+++.+..+. +..
T Consensus 85 g~~~~~~~~~-----~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~ 146 (225)
T 2yhc_A 85 GLTNMALDDS-----A------------LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRL 146 (225)
T ss_dssp HHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-----h------------hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHH
Confidence 3333331100 0 001111222223344445555555544433211 111
Q ss_pred --HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 333 --TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT----ITYSILLVACERKDDVEVGLMLLSQAKEDG 396 (670)
Q Consensus 333 --~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g 396 (670)
....+...|.+.|++++|+..|+++.+. .|+. ..+..+..++.+.|+.++|.+.++.+...+
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1134567889999999999999999874 4542 467788889999999999999999888764
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.53 E-value=2.4e-07 Score=82.15 Aligned_cols=112 Identities=13% Similarity=-0.005 Sum_probs=51.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 005905 238 QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALE 317 (670)
Q Consensus 238 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 317 (670)
..|++++|+..+......... +...+-.+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 334444444444444332110 11223334444445555555555555544443 3334455555555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 005905 318 LYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352 (670)
Q Consensus 318 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (670)
.|++..+..+ -+...|..+...|.+.|+.++|.+
T Consensus 87 ~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 87 CYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHH
Confidence 5555544331 234455555555555555544443
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.53 E-value=1.9e-06 Score=85.66 Aligned_cols=165 Identities=10% Similarity=-0.052 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-H
Q 005905 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL-I 268 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-i 268 (670)
+...+..+...+...|++++|...|++..+.. +.+...+..+...|.+.|++++|...+++..... |+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 34455666677778888888888888887765 5567788888888888888888888888876653 343322222 2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCh
Q 005905 269 DFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK-PTVSTMNALITALCDGDQL 347 (670)
Q Consensus 269 ~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~ 347 (670)
..+...++.+.|...+++..+.. +.+...+..+...|...|++++|...|.++.+.... .+...+..+...|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23556666777777777777765 556777778888888888888888888887765322 1256777788888888888
Q ss_pred hHHHHHHHHHH
Q 005905 348 PKTMEVLSDMK 358 (670)
Q Consensus 348 ~~A~~l~~~m~ 358 (670)
++|...|++-.
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 88887776643
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.51 E-value=1.9e-06 Score=86.46 Aligned_cols=191 Identities=12% Similarity=0.050 Sum_probs=91.2
Q ss_pred cCCHHHHHHHHHHHhhCCC----CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHH
Q 005905 167 SGAVDRAFDVLAEMNAEVH----PVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKYNI---KG--TPEVYTIAI 233 (670)
Q Consensus 167 ~g~~~~A~~l~~~m~~~~~----~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~--~~~~~~~li 233 (670)
.|++++|.+++++..+... ++.++. ..|......|...|++++|...|.+..+... .+ -..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777777776654210 011221 1334444455566666666666655443210 00 023455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CC-ccHHHHHHHH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKK----GVIP-DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG----IS-VGIISYSSLM 303 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~----~~-~~~~~~~~li 303 (670)
.+|.+.|++++|+..|++..+. |-.. -..++..+..+|.. |++++|...|++..+.. .. ....+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 6666666666666666554332 1000 12344455555555 66666665555544321 00 0123455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 304 GACSNAKNWQKALELYEHMKSI----KLKPT-VSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
..|.+.|++++|...|++..+. +..+. ...+..+..++...|++++|+..|++..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5556666666666655554431 11111 1234444445555556666666555554
No 111
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.50 E-value=1.4e-05 Score=79.57 Aligned_cols=197 Identities=6% Similarity=-0.042 Sum_probs=103.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHhcC-CCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHH----HH
Q 005905 123 LKADCKLYTTLITTCAKSGKVDAMFENV-KPDRVV---FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI----TI 194 (670)
Q Consensus 123 ~~pd~~~~~~li~~~~~~g~~~~~~~~~-~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~----t~ 194 (670)
..|+..+...+...+.. .++..+... ..+... +...+..+...|++++|..++++..... ...|+.. .+
T Consensus 42 ~~~~~~~l~~i~~~l~~--~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~ 118 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQI--PIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQ 118 (293)
T ss_dssp CCCCHHHHHHHHHHHTC--CTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCc--CHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHH
Confidence 45665555555444321 223333332 222322 2334667778888888888888877641 2223321 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHH
Q 005905 195 GALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDDMTKK-----GVIPD-EVF 263 (670)
Q Consensus 195 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~t 263 (670)
..+...+...|++++|...|++..+.... ++ ..+++.+..+|...|++++|...|++..+. +..+. ..+
T Consensus 119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (293)
T 3u3w_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 23445555666777777777777663222 12 235677777777777777777777776531 11111 124
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 005905 264 LSALIDFAGHAGKVEAAFEILQEAKNQ----GISV-GIISYSSLMGACSNAK-NWQKALELYEHM 322 (670)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~i~~~m~~~----~~~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m 322 (670)
+..+..+|.+.|++++|...+++..+. +..+ -..+|..+..+|.+.| .+++|.+.|++.
T Consensus 199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 455555566666666666655554431 1111 1345555555555555 245555555543
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.48 E-value=1.7e-06 Score=78.87 Aligned_cols=161 Identities=12% Similarity=0.037 Sum_probs=115.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-
Q 005905 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC- 235 (670)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~- 235 (670)
+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...|+.+.... + +...+..+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL---QSRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH---HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHH
Confidence 4455667788888999999888877641 2345677778888888999999998888876654 2 54443332212
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc-cHHHHHHHHHHHHhcCCHHH
Q 005905 236 CSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV-GIISYSSLMGACSNAKNWQK 314 (670)
Q Consensus 236 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~ 314 (670)
+.+.+....|...|++..+.... +...+..+..++...|++++|...|+.+.+....+ +...+..+...|...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 12223334577888888776543 57788888888889999999999999888775432 35677888888889999988
Q ss_pred HHHHHHHHH
Q 005905 315 ALELYEHMK 323 (670)
Q Consensus 315 A~~~~~~m~ 323 (670)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888654
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.47 E-value=7.6e-05 Score=74.09 Aligned_cols=228 Identities=9% Similarity=0.010 Sum_probs=164.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHh
Q 005905 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSG--AVDRAFDVLAEMN 181 (670)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~ 181 (670)
+....++|+.+++.++... |+. ..+||.--..+...| ++++++++++.+.
T Consensus 45 ~~e~s~~aL~~t~~~L~~n--P~~--------------------------~taWn~R~~~L~~l~~~~~~eeL~~~~~~L 96 (306)
T 3dra_A 45 AEEYSERALHITELGINEL--ASH--------------------------YTIWIYRFNILKNLPNRNLYDELDWCEEIA 96 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHC--TTC--------------------------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC--cHH--------------------------HHHHHHHHHHHHHcccccHHHHHHHHHHHH
Confidence 3344467888888877753 432 234454444555555 8899999999888
Q ss_pred hCCCCCCCC-HHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHH
Q 005905 182 AEVHPVDPD-HITIGALMKAC----ANA---GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE--FACSVYDD 251 (670)
Q Consensus 182 ~~~~~~~pd-~~t~~~li~~~----~~~---g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~l~~~ 251 (670)
.. .|. ...|+.-...+ ... +++++++++++.+.+.. +-+..+|+.-.-++.+.|.++ ++++.+++
T Consensus 97 ~~----nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~ 171 (306)
T 3dra_A 97 LD----NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDK 171 (306)
T ss_dssp HH----CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HH----CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 75 333 34454433333 444 78899999999998876 668888888888888888888 99999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh
Q 005905 252 MTKKGVIPDEVFLSALIDFAGHAGK------VEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK-ALELYEHMKS 324 (670)
Q Consensus 252 m~~~g~~p~~~t~~~li~~~~~~g~------~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~ 324 (670)
+++..+. |...|+.-.....+.+. ++++++.+..+.... +-|...|+-+-..+.+.|+... +..+..++.+
T Consensus 172 ~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 172 VIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred HHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 9988766 77777766666666665 888999998888876 6778889888888888887444 4456665544
Q ss_pred CC--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH
Q 005905 325 IK--LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367 (670)
Q Consensus 325 ~~--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 367 (670)
.+ -..+...+..+...|.+.|+.++|+++++.+.+. +.|-..
T Consensus 250 ~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~-~Dpir~ 293 (306)
T 3dra_A 250 LEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK-YNPIRS 293 (306)
T ss_dssp GGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGH
T ss_pred ccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc-cChHHH
Confidence 32 1347788889999999999999999999998763 345433
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.47 E-value=2.8e-06 Score=84.30 Aligned_cols=165 Identities=8% Similarity=-0.092 Sum_probs=132.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHH-HH
Q 005905 223 KGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISY-SS 301 (670)
Q Consensus 223 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~-~~ 301 (670)
+.+...+..+...+.+.|++++|...|++..+.... +...+..+..++...|++++|...++.+.... |+.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 455667778888899999999999999999887654 67788889999999999999999999887654 343332 23
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 005905 302 LMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPN---TITYSILLVACER 378 (670)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~ 378 (670)
....+...++.++|...|++..+.. +.+...+..+...|...|++++|+..|.++.+. .|+ ...+..+...+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 3334667788888999998887765 347888999999999999999999999999874 344 5678888899999
Q ss_pred cCCHHHHHHHHHHHH
Q 005905 379 KDDVEVGLMLLSQAK 393 (670)
Q Consensus 379 ~g~~~~a~~~~~~m~ 393 (670)
.|+.++|...+++..
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 999999988887654
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.41 E-value=4.4e-06 Score=83.83 Aligned_cols=189 Identities=13% Similarity=0.093 Sum_probs=136.0
Q ss_pred cCCHHHHHHHHHHHHHc------CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHH
Q 005905 204 AGQVDRAREVYKMIHKY------NIKGTP----EVYTIAINCCSQTGDWEFACSVYDDMTKKG----VIP-DEVFLSALI 268 (670)
Q Consensus 204 ~g~~~~A~~~~~~m~~~------~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p-~~~t~~~li 268 (670)
.|++++|.+++++..+. +..++. ..|+.....|...|++++|...|.+..+.. -.+ -..+|..+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677888888766542 112332 357777788999999999999998876532 111 134788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHC----CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---C--CHHHHHHHH
Q 005905 269 DFAGHAGKVEAAFEILQEAKNQ----GISV-GIISYSSLMGACSNAKNWQKALELYEHMKSIKLK---P--TVSTMNALI 338 (670)
Q Consensus 269 ~~~~~~g~~~~A~~i~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p--~~~~~~~li 338 (670)
.+|...|++++|...|++..+. |-.. ...+++.+...|.. |++++|...|++..+.... + ...+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8999999999999999887543 2111 24678888889988 9999999999987643111 1 146788889
Q ss_pred HHHHhCCChhHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 339 TALCDGDQLPKTMEVLSDMKS----LGLCPNT-ITYSILLVACERKDDVEVGLMLLSQAK 393 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 393 (670)
..|.+.|++++|+..|++... .+..++. .++..+..++...|++++|...|++..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999999875 2222222 255666667778899999999999887
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.40 E-value=2.1e-05 Score=73.63 Aligned_cols=129 Identities=12% Similarity=-0.024 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 235 (670)
.+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|...|+...+.. +.+..+|..+..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence 45556677778888888888887653 4566777788888888888888888888877765 5567778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005905 236 CSQTGDWEFACSVYDDMTKKGVIP---------------DEVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291 (670)
Q Consensus 236 ~~~~g~~~~A~~l~~~m~~~g~~p---------------~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~ 291 (670)
|...|++++|...|++..+..... ....+..+..+|...|++++|...++...+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888888888877653221 11455556666666666666666666666543
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.39 E-value=1.8e-05 Score=74.23 Aligned_cols=129 Identities=12% Similarity=0.003 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
.+..+...+...|++++|...|++.. .++..+|..+...|.+.|++++|...|++..+... .+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHH
Confidence 34556667778888888888887663 55777888888888888888888888888877653 36677778888888
Q ss_pred hcCChHHHHHHHHHHHHCCCC--------------c-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005905 273 HAGKVEAAFEILQEAKNQGIS--------------V-GIISYSSLMGACSNAKNWQKALELYEHMKSIK 326 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 326 (670)
..|++++|.+.++...+.... | ...++..+..+|.+.|++++|...|+...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888888888888888775311 1 23667777788888888888888888877654
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.36 E-value=4.1e-06 Score=74.09 Aligned_cols=124 Identities=10% Similarity=-0.034 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHH
Q 005905 129 LYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVD 208 (670)
Q Consensus 129 ~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~ 208 (670)
+...+.+.+...+.+..+.+.-+.+...|..+...+.+.|++++|+..|++..... +.+...|..+..+|...|+++
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~ 87 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD---FYNVDYIMGLAAIYQIKEQFQ 87 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHccHH
Confidence 34555555555555665555444456677788888888888999999888888742 234667778888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 209 RAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 209 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
+|...|++..+.. +.++..|..+..+|.+.|++++|...|++..+..
T Consensus 88 ~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 88 QAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888888888876 5567788888888888888888888888887764
No 119
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.34 E-value=0.00028 Score=70.86 Aligned_cols=231 Identities=9% Similarity=-0.035 Sum_probs=170.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAG-QVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
.++.+-......+..++|+++++.+... .|+ ...|+.--..+...| .+++++++++.+...+ +-+..+|+.--
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~----nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~ 130 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRM----NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRL 130 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHh----CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 3444444555566678999999999875 555 445676666777788 5999999999999876 66788998877
Q ss_pred HHHHhc-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCccHHHHHHHH
Q 005905 234 NCCSQT-G-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVE--------AAFEILQEAKNQGISVGIISYSSLM 303 (670)
Q Consensus 234 ~~~~~~-g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--------~A~~i~~~m~~~~~~~~~~~~~~li 303 (670)
.++.+. + ++++++++++++.+...+ |...|+.-.-+..+.+.++ ++++.+..+.+.. +-|...|+-..
T Consensus 131 wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~ 208 (349)
T 3q7a_A 131 LLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRW 208 (349)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 777776 7 899999999999988765 7777766555555555555 8999999998876 56788888888
Q ss_pred HHHHhcCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh--------------------hHHHHHHHH
Q 005905 304 GACSNAKN-------WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL--------------------PKTMEVLSD 356 (670)
Q Consensus 304 ~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~l~~~ 356 (670)
..+.+.+. ++++.+.+.+.....+ -|...|+.+-..+.+.|+. .+..+...+
T Consensus 209 ~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (349)
T 3q7a_A 209 YLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFP 287 (349)
T ss_dssp HHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CC
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHH
Confidence 88888876 7889999988887663 4888998888777777765 223333333
Q ss_pred HHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 357 MKSLG-----LCPNTITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 357 m~~~g-----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
+...+ -.++...+..+...|...|+.++|.++++.+.+
T Consensus 288 ~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 288 MPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 33221 136777888888899999999999999988764
No 120
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.33 E-value=2.2e-05 Score=65.88 Aligned_cols=98 Identities=18% Similarity=0.152 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...|..+...|...|++++|.++|+++.... +.+..++..+...+...|++++|...|+.+.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence 3445555566666666666666666665431 2234455555556666666666666666655543 34455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 005905 234 NCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
..|.+.|++++|...|+++.+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 6666666666666666665554
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.33 E-value=2.3e-05 Score=69.80 Aligned_cols=92 Identities=12% Similarity=-0.027 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005905 196 ALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275 (670)
Q Consensus 196 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 275 (670)
.+...+...|++++|...|+...+.. +.+..++..+..+|...|++++|...|++..+... .+...+..+..++...|
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhc
Confidence 33344444444444444444444432 22344444444444444444444444444444321 13334444444444444
Q ss_pred ChHHHHHHHHHHHH
Q 005905 276 KVEAAFEILQEAKN 289 (670)
Q Consensus 276 ~~~~A~~i~~~m~~ 289 (670)
++++|...++++.+
T Consensus 96 ~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 96 KFRAALRDYETVVK 109 (166)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 44444444444443
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.32 E-value=2.6e-05 Score=77.44 Aligned_cols=125 Identities=6% Similarity=-0.011 Sum_probs=61.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 005905 198 MKACANAGQVDRAREVYKMIHKYNIK-GTP----EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVFLSAL 267 (670)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~m~~~~~~-~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~l 267 (670)
+..+...|++++|..++++..+.... ++. ..+..+...|...|++++|+..|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45566667777777776666553211 111 12223444555555666666666666553211 11 1245555
Q ss_pred HHHHHhcCChHHHHHHHHHHHH----C-CCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 268 IDFAGHAGKVEAAFEILQEAKN----Q-GISV-GIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 268 i~~~~~~g~~~~A~~i~~~m~~----~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
..+|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|...+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5555555555555555555542 1 1111 1224445555555555555555555543
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.32 E-value=2.7e-05 Score=65.23 Aligned_cols=97 Identities=20% Similarity=0.149 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271 (670)
Q Consensus 192 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 271 (670)
..+..+...+...|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|..+|+++.+... .+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHH
Confidence 445555555666666666666666555543 33455555555556666666666666655554432 2344455555555
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 005905 272 GHAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 272 ~~~g~~~~A~~i~~~m~~~ 290 (670)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5555555555555555443
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.31 E-value=2.5e-05 Score=69.65 Aligned_cols=130 Identities=11% Similarity=-0.045 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...|++..+.. +.+..+|..+.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 3467788889999999999999999988752 3457788889999999999999999999998875 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS--ALIDFAGHAGKVEAAFEILQEAK 288 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~A~~i~~~m~ 288 (670)
.+|...|++++|...|++..+.... +...+. .....+...|++++|.+.+....
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999999999887543 444443 33333666777888877776553
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.26 E-value=7e-05 Score=74.30 Aligned_cols=167 Identities=10% Similarity=0.010 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---Ccc--HH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE-----VFLSALIDFAGHAGKVEAAFEILQEAKNQGI---SVG--II 297 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~---~~~--~~ 297 (670)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+.+..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3344555666777777777777666654322111 1233344556667778888887777764321 111 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCCC-H
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKS---I-KLKP--TVSTMNALITALCDGDQLPKTMEVLSDMKSL----GLCPN-T 366 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~-~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 366 (670)
+++.+...|...|++++|...|++..+ . +..+ ...+|+.+...|...|++++|+..|++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 777888888888888888888887652 1 1111 1257777888888888888888888876542 11111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 005905 367 ITYSILLVACERKDDVEVG-LMLLSQAKE 394 (670)
Q Consensus 367 ~t~~~ll~a~~~~g~~~~a-~~~~~~m~~ 394 (670)
.+|..+..++.+.|+.++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6677777888888888888 666766553
No 126
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.25 E-value=3.4e-05 Score=65.74 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
.|..+..++.+.|++++|+..|+...+.+ +.+..+|..+..+|...|++++|.+.|++.++
T Consensus 49 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 49 LYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333334444444444444444433332 22333333444444444444444444444333
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.25 E-value=3.1e-05 Score=66.04 Aligned_cols=115 Identities=10% Similarity=-0.004 Sum_probs=97.4
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 005905 187 VDPD-HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLS 265 (670)
Q Consensus 187 ~~pd-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 265 (670)
+.|+ ...+......|.+.|++++|++.|++..+.+ +.+..+|..+..+|.+.|++++|+..|++.++.+.. +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHH
Confidence 4555 3467778889999999999999999998876 678899999999999999999999999999987654 778899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 005905 266 ALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304 (670)
Q Consensus 266 ~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~ 304 (670)
.+..++...|++++|.+.|+...+.. +-+...+..|-.
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 99999999999999999999999875 445566655543
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.23 E-value=0.00013 Score=72.32 Aligned_cols=161 Identities=6% Similarity=-0.044 Sum_probs=96.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHH
Q 005905 197 LMKACANAGQVDRAREVYKMIHKYNIKGTP------EVYTIAINCCSQTGDWEFACSVYDDMTKKGV---IPD--EVFLS 265 (670)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~t~~ 265 (670)
.+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|+..|.+..+... .+. ..+++
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344444555555555555544443211 11 1223344555666677777777766654321 111 33666
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH---C-CCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHHHH
Q 005905 266 ALIDFAGHAGKVEAAFEILQEAKN---Q-GISV--GIISYSSLMGACSNAKNWQKALELYEHMKSIK----LKP-TVSTM 334 (670)
Q Consensus 266 ~li~~~~~~g~~~~A~~i~~~m~~---~-~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~~~~ 334 (670)
.+...|...|++++|...++++.+ . +..+ ...+++.+...|.+.|++++|...|++..+.. ... -..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 677777777777777777776652 1 1111 12577788888888888888888888765421 111 15677
Q ss_pred HHHHHHHHhCCChhHH-HHHHHHHH
Q 005905 335 NALITALCDGDQLPKT-MEVLSDMK 358 (670)
Q Consensus 335 ~~li~~~~~~g~~~~A-~~l~~~m~ 358 (670)
..+...|...|++++| ...|++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8888888889999888 66676654
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.23 E-value=3.1e-05 Score=65.95 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
+..+...+...|++++|...|++..+.. +.+..++..+..+|...|++++|...|++..+.... +...+..+..++..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 3333444444444444444444443332 223334444444444444444444444444333211 23333333334444
Q ss_pred cCChHHHHHHHHHHH
Q 005905 274 AGKVEAAFEILQEAK 288 (670)
Q Consensus 274 ~g~~~~A~~i~~~m~ 288 (670)
.|++++|.+.+++..
T Consensus 97 ~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 97 MKDYTKAMDVYQKAL 111 (133)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHH
Confidence 444444444444433
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.23 E-value=3.1e-05 Score=65.54 Aligned_cols=116 Identities=9% Similarity=-0.063 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|.+.++...+.. +.+..++..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN---PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 345555555666666666666666655431 2234455555555666666666666666555543 334555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005905 235 CCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 275 (670)
+|.+.|++++|...|++..+.... +...+..+..++...|
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 666666666666666655554322 3444444444444443
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.23 E-value=1.1e-05 Score=74.71 Aligned_cols=26 Identities=4% Similarity=-0.009 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDM 252 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m 252 (670)
.++..+...|...|++++|...|++.
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~a 52 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQAL 52 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34444444444445544444444444
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.21 E-value=4.2e-06 Score=82.80 Aligned_cols=187 Identities=13% Similarity=-0.024 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
.+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...+++..+.... +...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 34444444445555555555555444433 234444555555555555555555555555444322 3444445555555
Q ss_pred hcCChHHHHHHHHHHHHCCC----CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChh
Q 005905 273 HAGKVEAAFEILQEAKNQGI----SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 348 (670)
..|++++|...+....+... ......+..+ ...+... +..........+......+. .+ ..|+.+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~i~~~l~-~l-~~~~~~ 152 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKR-------WNSIEERRIHQESELHSYLT-RL-IAAERE 152 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHH-------HHHHHHTCCCCCCHHHHHHH-HH-HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHH-------HHHHHHHHHhhhHHHHHHHH-HH-HHHHHH
Confidence 55555555555554443210 0001111111 1111111 11112222233333333332 22 246777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhc-CCHHHHHHHHHHHHH
Q 005905 349 KTMEVLSDMKSLGLCPNTITYSILLVA-CERK-DDVEVGLMLLSQAKE 394 (670)
Q Consensus 349 ~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~-g~~~~a~~~~~~m~~ 394 (670)
+|++.+++..+. .|+......-+.. +.+. +.++++.++|..+.+
T Consensus 153 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777766653 5655444333333 3333 567788888877665
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.21 E-value=1.5e-05 Score=73.98 Aligned_cols=156 Identities=10% Similarity=0.017 Sum_probs=113.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CccHHHHHHHHHHHHhcCC
Q 005905 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ----GI-SVGIISYSSLMGACSNAKN 311 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~----~~-~~~~~~~~~li~~~~~~g~ 311 (670)
...|++++|.++++.+.. ........+..+...+...|++++|...+++..+. +. .....+++.+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457888899885555533 22235678888888999999999999999988762 21 2335678888999999999
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhCCChhHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhc
Q 005905 312 WQKALELYEHMKSI----KLKP--TVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCPN--TITYSILLVACERK 379 (670)
Q Consensus 312 ~~~A~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~--~~t~~~ll~a~~~~ 379 (670)
+++|...|++..+. +..+ ....+..+...+...|++++|...+++... .+ .|. ..++..+...+...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHC
Confidence 99999999886643 2111 245677888899999999999999998764 22 111 23456677788899
Q ss_pred CCHHHHHHHHHHHHH
Q 005905 380 DDVEVGLMLLSQAKE 394 (670)
Q Consensus 380 g~~~~a~~~~~~m~~ 394 (670)
|++++|...+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999987765
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.21 E-value=3.4e-05 Score=65.30 Aligned_cols=95 Identities=9% Similarity=-0.019 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
.+..+...+...|++++|...|+...... +.+..++..+...|...|++++|...+++..+.... +...+..+..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHH
Confidence 34444445555555555555555554433 233444555555555555555555555554443221 2334444444444
Q ss_pred hcCChHHHHHHHHHHHH
Q 005905 273 HAGKVEAAFEILQEAKN 289 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~ 289 (670)
..|++++|...++...+
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 44444444444444443
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.19 E-value=1.7e-05 Score=71.94 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=63.2
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--HH
Q 005905 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF-AGHAGKV--EA 279 (670)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~-~~~~g~~--~~ 279 (670)
..|++++|...++...+.. +.+..+|..+...|...|++++|...|++..+.... +...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555666665555543 344555666666666666666666666665554322 44444445555 4455555 56
Q ss_pred HHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 005905 280 AFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSI 325 (670)
Q Consensus 280 A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (670)
|...++.+.+.. +.+...+..+...|...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666665555543 233455555555566666666666666655544
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.18 E-value=3.2e-05 Score=65.84 Aligned_cols=120 Identities=11% Similarity=-0.036 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005905 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230 (670)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 230 (670)
..+...|..+...|.+.|++++|+..|++..... +.+...+..+...+...|++++|.+.|++..+.. +.+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 88 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN---PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYT 88 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHH
Confidence 3456788899999999999999999999998752 3367788888899999999999999999998875 56788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG 275 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 275 (670)
.+..+|.+.|++++|...|++..+.... +...+..+..++...|
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 9999999999999999999998876433 3445555555554443
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.16 E-value=1.4e-05 Score=70.62 Aligned_cols=95 Identities=9% Similarity=-0.065 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACE 377 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 377 (670)
.+..+...|.+.|++++|...|++..... +.+...|..+..+|...|++++|+..|++..+.. +-+...|..+-.++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 34444444555555555555555554443 1244455555555555555555555555554421 112344444445555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 005905 378 RKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 378 ~~g~~~~a~~~~~~m~~ 394 (670)
..|++++|...|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555544
No 138
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.15 E-value=0.003 Score=67.45 Aligned_cols=336 Identities=9% Similarity=-0.002 Sum_probs=172.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhh-HHHHHHHhhhC------CCCCHHHHHHHHHHHHc----C
Q 005905 37 RQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA-IKEAFRFFKLV------PNPTLSTFNMLMSVCAS----S 105 (670)
Q Consensus 37 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~------~~~~~~~y~~li~~~~~----~ 105 (670)
-.|+++.+.++|++....- |... +....+....+.+. .+.....|+.. ...+...|...+..+.. .
T Consensus 26 P~~~~e~~~~iferal~~~--ps~~-LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~ 102 (493)
T 2uy1_A 26 MSKDYRSLESLFGRCLKKS--YNLD-LWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQ 102 (493)
T ss_dssp HTTCHHHHHHHHHHHSTTC--CCHH-HHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHH
T ss_pred CCCCHHHHHHHHHHHhccC--CCHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhh
Confidence 3488888999988887743 4333 33334444443332 22233344431 13466778777766542 3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 005905 106 KDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVH 185 (670)
Q Consensus 106 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 185 (670)
++.+.+..+|++.+.. ++.. +..+-..|... +.. .+..+...++..+. +.+..|..+++.+...-.
T Consensus 103 ~~~~~vR~iy~rAL~~--P~~~--~~~lw~~Y~~f---E~~-----~~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 103 TRIEKIRNGYMRALQT--PMGS--LSELWKDFENF---ELE-----LNKITGKKIVGDTL--PIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHHHHHHHHHTS--CCTT--HHHHHHHHHHH---HHH-----HCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--hhhh--HHHHHHHHHHH---HHH-----hccccHHHHHHHHh--HHHHHHHHHHHHHHHHHh
Confidence 5677888888888873 2221 12222222221 000 01112222222211 223444444444432100
Q ss_pred CCCCCHHHHHHHHHHHHHc--C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005905 186 PVDPDHITIGALMKACANA--G-----QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI 258 (670)
Q Consensus 186 ~~~pd~~t~~~li~~~~~~--g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 258 (670)
..+...|...+.--... | ..+.+..+|+.+.... +.+...|...+..+.+.|+.+.|..+|++.... +
T Consensus 169 --~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P 243 (493)
T 2uy1_A 169 --GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--S 243 (493)
T ss_dssp --TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred --hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--C
Confidence 01233444444432221 1 1345667777777643 555777777777777888888888888887776 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005905 259 PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQG------------ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326 (670)
Q Consensus 259 p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 326 (670)
.+...+. .|+.....++. ++.+.+.- ......+|...+..+.+.+..+.|..+|+.. ...
T Consensus 244 ~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~ 315 (493)
T 2uy1_A 244 DGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE 315 (493)
T ss_dssp CSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS
T ss_pred CcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC
Confidence 2322222 22222111111 22221110 0112345666777777778888888888888 321
Q ss_pred CCCCHHHHHHHHHHHHh-CCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 327 LKPTVSTMNALITALCD-GDQLPKTMEVLSDMKSLGLCPN-TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404 (670)
Q Consensus 327 ~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 404 (670)
..+...|-.....-.. .++.+.|..+|+...+. + |+ ...+...++-..+.|+.+.|..+|+.+. .....+
T Consensus 316 -~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw 387 (493)
T 2uy1_A 316 -GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-H-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMW 387 (493)
T ss_dssp -CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHH
T ss_pred -CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHH
Confidence 2233444322222222 23588888888887764 2 33 3344555666677888888888888762 235556
Q ss_pred HHHHHH
Q 005905 405 KCIIGM 410 (670)
Q Consensus 405 ~~li~~ 410 (670)
...++.
T Consensus 388 ~~~~~f 393 (493)
T 2uy1_A 388 DSMIEY 393 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.14 E-value=3.5e-05 Score=78.24 Aligned_cols=122 Identities=9% Similarity=-0.042 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----------------HITIGALMKACANAGQVDRAREVYKM 216 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd----------------~~t~~~li~~~~~~g~~~~A~~~~~~ 216 (670)
+...|..+...|.+.|++++|+..|++.... .|+ ...|..+..+|.+.|++++|...|+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW----LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456777788888888888888888888764 333 25556666666666666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005905 217 IHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280 (670)
Q Consensus 217 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 280 (670)
..+.. +.+..+|..+..+|...|++++|...|++.++.... +...+..+..++...|+.++|
T Consensus 222 al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 222 ALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 66554 445566666666666666666666666666555432 445555555555555555555
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.14 E-value=1e-05 Score=73.45 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=69.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhCCCh--hH
Q 005905 273 HAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITA-LCDGDQL--PK 349 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 349 (670)
..|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+... |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455556666666555543 3445566666666666666666666666665543 2255556666666 5566666 67
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 350 TMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 350 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
|+..|++..+.. +-+...+..+...+...|++++|...|+++.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777776666531 223455556666666777777777777666654
No 141
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.13 E-value=7.3e-06 Score=81.02 Aligned_cols=184 Identities=10% Similarity=-0.008 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHH
Q 005905 225 TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMG 304 (670)
Q Consensus 225 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~ 304 (670)
+...+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567788888899999999999999998877543 77888888899999999999999999988765 556788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005905 305 ACSNAKNWQKALELYEHMKSIKLK----PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKD 380 (670)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 380 (670)
+|...|++++|...|++..+.... -+...+..+. .. ++. -+......-..++......+ ..+ ..|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~--~~------~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~ 149 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR--IA------KKK-RWNSIEERRIHQESELHSYL-TRL-IAA 149 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH--HH------HHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH--HH------HHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHH
Confidence 999999999999999887653211 1112222221 11 111 12222233233444333333 332 368
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hhHHHHHHhHH
Q 005905 381 DVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCS----RRYEKARTLNE 423 (670)
Q Consensus 381 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----r~~~~a~~l~~ 423 (670)
+.++|++.++...+. .|+......-+.... +.++++..+++
T Consensus 150 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~ 194 (281)
T 2c2l_A 150 ERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFS 194 (281)
T ss_dssp HHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 888998888776654 466543333332221 24555555554
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.10 E-value=6e-05 Score=73.23 Aligned_cols=201 Identities=10% Similarity=0.037 Sum_probs=125.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHH------------CCCC-----
Q 005905 203 NAGQVDRAREVYKMIHKYNIKGTPEVYTIA-------INCCSQTGDWEFACSVYDDMTK------------KGVI----- 258 (670)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~------------~g~~----- 258 (670)
..++...|.+.|.++.+.. +.....|+.+ ...+...++..+++..+..-.. .|.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4566777777777776665 4455666665 3444444444444444443332 1100
Q ss_pred ---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHH
Q 005905 259 ---PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT--VST 333 (670)
Q Consensus 259 ---p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~ 333 (670)
--......+...+...|++++|.++|..+...+ |+......+...|.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 001233345566777888888888887776544 333355566668888899999998887554321 111 235
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPN--TITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIG 409 (670)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 409 (670)
+..+-.++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++.... |+......|.+
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL~~ 249 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHhC
Confidence 66778888899999999999998875333254 2344555667788899999999999888854 65555554443
No 143
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.08 E-value=7.7e-05 Score=75.71 Aligned_cols=123 Identities=11% Similarity=-0.053 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--------------PEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 191 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
...+..+...|.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..|++.++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45667777788888888888888888877652221 3566666666666666666666666666554
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHH
Q 005905 257 VIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKA 315 (670)
Q Consensus 257 ~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 315 (670)
.. +...|..+..+|...|++++|...|+.+.+.. +.+..++..+..++.+.|+.++|
T Consensus 227 p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 32 45556666666666666666666666665543 33445555566666666666555
No 144
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.08 E-value=0.0024 Score=63.70 Aligned_cols=219 Identities=13% Similarity=0.075 Sum_probs=151.6
Q ss_pred HhcCCH-HHHHHHHHHHhhCCCCCCCCHHH-HHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 165 GQSGAV-DRAFDVLAEMNAEVHPVDPDHIT-IGALMKACANAGQ----------VDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 165 ~~~g~~-~~A~~l~~~m~~~~~~~~pd~~t-~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
.+.|.+ ++|+.+++.+... .|+..| |+.--..+...+. +++++.+++.+...+ +-+..+|+.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~----nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR 114 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHR 114 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345554 5899999999864 666544 4433223322222 678889998888876 6678889887
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 233 INCCSQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK-VEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 233 i~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
.-++.+.+ ++++++.+++++.+.... |...|+.-.-++...|. .+++++.+..+.+.. +.|...|+.....+.+.
T Consensus 115 ~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 115 CWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred HHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence 77777777 489999999999988766 77788777777777887 589999999998876 66777777776666554
Q ss_pred --------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-----------CChhHHHHHHHHHHhCCCCC
Q 005905 310 --------------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDG-----------DQLPKTMEVLSDMKSLGLCP 364 (670)
Q Consensus 310 --------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p 364 (670)
+.++++.+.+....... +-|...|+.+-..+.+. +.++++++.++++.+. .|
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~p 269 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EP 269 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CT
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cc
Confidence 45788888888887765 34788888666555555 4577888888888873 56
Q ss_pred CHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHH
Q 005905 365 NTITYSILLV-----ACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 365 ~~~t~~~ll~-----a~~~~g~~~~a~~~~~~m~~ 394 (670)
|. .|..+-. +....|..++...++.++++
T Consensus 270 d~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 270 EN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp TC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 54 2322111 12234555566666665554
No 145
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.08 E-value=0.0035 Score=66.92 Aligned_cols=328 Identities=9% Similarity=-0.008 Sum_probs=171.6
Q ss_pred cC-CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCC--CCCHHHHHHHHHHHHcCCC-HHHHHH
Q 005905 38 QG-RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVP--NPTLSTFNMLMSVCASSKD-SEGAFQ 113 (670)
Q Consensus 38 ~g-~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~y~~li~~~~~~g~-~~~A~~ 113 (670)
.| +++.|..+|+.+...- |. ++++.+..+|++.. .|++..|...+....+.++ .+....
T Consensus 7 ~~~~i~~aR~vyer~l~~~--P~---------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRLY--MS---------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp -----CCHHHHHHHHHHHH--HT---------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred cCcchHHHHHHHHHHHHHC--CC---------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 45 3666777777665542 21 55677777776543 3677777776666555442 233444
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCCC
Q 005905 114 VLRLVQEA-GLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACG----QSGAVDRAFDVLAEMNAEVHPVD 188 (670)
Q Consensus 114 ~~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~~~~~~ 188 (670)
+|+..+.. |..| .+...|...+.-+. ..++++.+..+|++.... +..
T Consensus 70 ~fe~al~~vg~d~--------------------------~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~ 121 (493)
T 2uy1_A 70 VYEFTLGQFENYW--------------------------DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG 121 (493)
T ss_dssp HHHHHHHHSTTCT--------------------------TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT
T ss_pred HHHHHHHHcCCCc--------------------------ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh
Confidence 55554442 2211 23344444443322 234566777777777652 111
Q ss_pred CCHHHHHHHHHHH-------------HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHH
Q 005905 189 PDHITIGALMKAC-------------ANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTG--D-----WEFACSV 248 (670)
Q Consensus 189 pd~~t~~~li~~~-------------~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~l 248 (670)
--...|......- ...+.+..|..+++.+...--..+...|...+..-...+ - .+.+..+
T Consensus 122 ~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 122 SLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 0011121111100 011234455666655543210123456766665533221 1 3457789
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--
Q 005905 249 YDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK-- 326 (670)
Q Consensus 249 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-- 326 (670)
|++++.... .+...|...+..+.+.|+.+.|..+++..... +.+...+.. |+.....++ +++.+.+.-
T Consensus 202 ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~---~~~~l~~~~~~ 271 (493)
T 2uy1_A 202 HNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEA---VYGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTH---HHHHHHHHTC-
T ss_pred HHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhH---HHHHHHHHHHh
Confidence 999887643 36788888888889999999999999999987 444333332 322211111 122222110
Q ss_pred ----------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHC
Q 005905 327 ----------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVAC-ERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 327 ----------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~ 395 (670)
.......|-..+..+.+.+..+.|..+|++. ... .++...|......- ...++.+.|..+|+...+.
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 0112345777777777788899999999999 321 23444454322221 2234799999999998874
Q ss_pred CCCCCHHHHHHHHHHHHh--hHHHHHHhHH
Q 005905 396 GVIPNLVMFKCIIGMCSR--RYEKARTLNE 423 (670)
Q Consensus 396 g~~p~~~~~~~li~~~~r--~~~~a~~l~~ 423 (670)
. .-+...+...++...+ ..++|..+.+
T Consensus 350 ~-~~~~~~~~~yid~e~~~~~~~~aR~l~e 378 (493)
T 2uy1_A 350 H-PDSTLLKEEFFLFLLRIGDEENARALFK 378 (493)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 1223444445554332 3344444433
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.05 E-value=0.00019 Score=59.18 Aligned_cols=95 Identities=16% Similarity=0.077 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINC 235 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 235 (670)
.|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD---PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34444444444445555555444444321 1133334444444444444444444444444432 2233444444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 005905 236 CSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 236 ~~~~g~~~~A~~l~~~m~~ 254 (670)
|...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 4444444444444444443
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.04 E-value=1.4e-05 Score=70.43 Aligned_cols=97 Identities=9% Similarity=-0.066 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVA 375 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 375 (670)
...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|+..|++..... +-+...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence 3344455555555666666666665555443 2255555555555566666666666666555421 1233445555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 005905 376 CERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~~ 394 (670)
+...|++++|...|+...+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5566666666666655554
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.04 E-value=0.0002 Score=59.16 Aligned_cols=112 Identities=13% Similarity=0.010 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 191 HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDF 270 (670)
Q Consensus 191 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 270 (670)
...+..+...+...|++++|...|+...... +.+...+..+...|...|++++|...+++..+.... +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 4567778888999999999999999998865 567888999999999999999999999999887543 67888889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHH
Q 005905 271 AGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA 305 (670)
Q Consensus 271 ~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~ 305 (670)
+...|++++|.+.++...+.. +.+...+..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 999999999999999998765 3445555555443
No 149
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.03 E-value=0.00021 Score=69.32 Aligned_cols=181 Identities=9% Similarity=0.034 Sum_probs=91.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-------HHHHhcCCHHHHHh------cCCC-------C----------
Q 005905 104 SSKDSEGAFQVLRLVQEAGLKADCKLYTTLI-------TTCAKSGKVDAMFE------NVKP-------D---------- 153 (670)
Q Consensus 104 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li-------~~~~~~g~~~~~~~------~~~~-------~---------- 153 (670)
..++...|.+.|.++.+.. +-....|..++ ..+.+.++..+++. ++.| +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5788888888888888764 23455565552 22222222221111 0011 0
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--H
Q 005905 154 -----RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT--P 226 (670)
Q Consensus 154 -----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~ 226 (670)
...+-.....+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...... .|. .
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~----~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA----GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT----TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 223334555666667777777777666542 3443344444445666666666666665333211 110 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFAGHAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~i~~~m~~~ 290 (670)
.++..+-.++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2455555566666666666666666553322132 123333444455556666666666655554
No 150
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.03 E-value=2.2e-05 Score=69.12 Aligned_cols=10 Identities=30% Similarity=0.664 Sum_probs=3.5
Q ss_pred CCHHHHHHHH
Q 005905 205 GQVDRAREVY 214 (670)
Q Consensus 205 g~~~~A~~~~ 214 (670)
|++++|...|
T Consensus 35 g~~~~A~~~~ 44 (148)
T 2vgx_A 35 GXYEDAHXVF 44 (148)
T ss_dssp TCHHHHHHHH
T ss_pred CChHHHHHHH
Confidence 3333333333
No 151
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.02 E-value=0.0033 Score=63.04 Aligned_cols=31 Identities=13% Similarity=0.327 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
+....+..|...|...|+.++|.++++.+.+
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 4555666666666666666666666666653
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=0.00026 Score=61.32 Aligned_cols=110 Identities=11% Similarity=0.010 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 005905 152 PDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----HITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE 227 (670)
Q Consensus 152 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 227 (670)
.+...|..+...+...|++++|+..|++.... .|+ ...+..+...|...|++++|...++...+.. +.+..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 100 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL----DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVK 100 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHH
Confidence 46777888888888999999999999988764 566 5667777788888888888888888887764 45677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 267 (670)
.+..+..+|...|++++|...|++..+.... +...+..+
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 139 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence 8888888888888888888888888776432 34444333
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.00015 Score=61.36 Aligned_cols=97 Identities=11% Similarity=-0.057 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
..|..+...+.+.|++++|+..|++..... +.+...|..+..++.+.|++++|...|+...+.+ +.+..+|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 456666777777788888888887776641 2345667777777777788888888777777765 455677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 005905 235 CCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~~~ 255 (670)
+|...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 777777777777777777654
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.98 E-value=1.3e-05 Score=74.45 Aligned_cols=120 Identities=9% Similarity=-0.095 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD---------------EVFLSALIDFAGHAGKVEAAFEILQEAKNQG 291 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---------------~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~ 291 (670)
..+..+...+.+.|++++|...|++..+....-. ...+..+..+|...|++++|...+....+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455555666666666666666666655322100 1334444444444444444444444444432
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChh
Q 005905 292 ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLP 348 (670)
Q Consensus 292 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 348 (670)
+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHH
Confidence 2233444444444444444444444444444332 113334444444443333333
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00018 Score=60.87 Aligned_cols=60 Identities=15% Similarity=0.088 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
..|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++.
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 333344444444444444444444433332 112333334444444444444444444433
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.92 E-value=0.0018 Score=67.79 Aligned_cols=198 Identities=8% Similarity=-0.008 Sum_probs=141.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPD---------------HITIGALMKACANAGQVDRAREVYKMIHKYNIK-G 224 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd---------------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~ 224 (670)
...+.+.|++++|++.|..+.+.... ..+ ...+..+...|...|++++|.+.+..+...--. +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSS-QSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCC-SSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-cchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34577899999999999999875211 111 123677889999999999999999877553111 1
Q ss_pred CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC----
Q 005905 225 TP----EVYTIAINCCSQTGDWEFACSVYDDMTK----KGVIPD-EVFLSALIDFAGHAGKVEAAFEILQEAKNQG---- 291 (670)
Q Consensus 225 ~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~---- 291 (670)
+. .+.+.+-..+...|+++.|..++.+... .+..+. ..++..+...|...|++++|..+++++...-
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 11 2333444455567899999999988753 233333 4577788899999999999999999876431
Q ss_pred -CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 292 -ISVGIISYSSLMGACSNAKNWQKALELYEHMKSI----KLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 292 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
-+....++..++..|...|++++|..++++.... ...+. ...+..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1223568889999999999999999999877532 21111 34567777788889999999988877654
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.92 E-value=0.00018 Score=66.60 Aligned_cols=124 Identities=7% Similarity=-0.144 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--------------HITIGALMKACANAGQVDRAREVYKMIHK 219 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd--------------~~t~~~li~~~~~~g~~~~A~~~~~~m~~ 219 (670)
...+..+...+...|++++|+..|++..... +-.|+ ...+..+..+|...|++++|...++...+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3456667777888888888888888877641 11111 14455555556666666666666666555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005905 220 YNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280 (670)
Q Consensus 220 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 280 (670)
.. +.+..++..+..+|...|++++|...|++..+.... +...+..+..++...++.+++
T Consensus 117 ~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 117 ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-
T ss_pred hC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 43 344555555666666666666666666655554322 344444444444444443333
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.91 E-value=0.0001 Score=60.25 Aligned_cols=98 Identities=10% Similarity=-0.024 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKG--TPEVYTIA 232 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~l 232 (670)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|.+.|++..+.. +. +..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD---PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 345555666666677777777776665531 2344556666666666666777766666666553 33 45666666
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCC
Q 005905 233 INCCSQT-GDWEFACSVYDDMTKKG 256 (670)
Q Consensus 233 i~~~~~~-g~~~~A~~l~~~m~~~g 256 (670)
..+|.+. |++++|.+.|++..+..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 6666666 66666666666666553
No 159
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00082 Score=70.42 Aligned_cols=197 Identities=11% Similarity=0.070 Sum_probs=140.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC
Q 005905 198 MKACANAGQVDRAREVYKMIHKYNIKGT----------------PEVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIPD 260 (670)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~ 260 (670)
...+.+.|++++|.+.|..+.+...... ..++..+...|...|++++|.+.+.++...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999999987542211 1347788999999999999999998876531 1122
Q ss_pred HH----HHHHHHHHHHhcCChHHHHHHHHHHHH----CCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 005905 261 EV----FLSALIDFAGHAGKVEAAFEILQEAKN----QGIS-VGIISYSSLMGACSNAKNWQKALELYEHMKSI----KL 327 (670)
Q Consensus 261 ~~----t~~~li~~~~~~g~~~~A~~i~~~m~~----~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 327 (670)
.. +.+.+-..+...|+.+.|..++..... .+.. .-..++..+...|...|++++|..+++++... +-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 222233334456889999999887754 2222 23567889999999999999999999987542 11
Q ss_pred CC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHhC--CC-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 328 KP-TVSTMNALITALCDGDQLPKTMEVLSDMKSL--GL-CP-N--TITYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 328 ~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~-~p-~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
.+ ...+|..++..|...|++++|..++++.... .+ .| . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12 2557888999999999999999999887641 11 22 1 23455556667889999999998877654
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.87 E-value=0.00017 Score=62.59 Aligned_cols=94 Identities=20% Similarity=0.098 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 157 FNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC 236 (670)
Q Consensus 157 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (670)
+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|+...+.+ +.++..+..+..+|
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD---HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 3344444555555555555555554421 1233444444555555555555555555555443 33444455555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 005905 237 SQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~ 254 (670)
...|++++|...|++..+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555443
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.87 E-value=0.00031 Score=60.10 Aligned_cols=98 Identities=5% Similarity=-0.110 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
+...|..+...+...|++++|+..|.+..... +.+...|..+..++...|++++|...|+...+.+ +.+..+|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN---PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 44455555555555666666666665555431 2234455555555555556666655555555543 3345555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005905 233 INCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~ 254 (670)
..+|...|++++|...|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555555543
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.86 E-value=0.00031 Score=59.69 Aligned_cols=55 Identities=9% Similarity=0.100 Sum_probs=22.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 197 LMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDM 252 (670)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 252 (670)
+...+.+.|++++|++.|++..+.. +.+..+|+.+..+|.+.|++++|+..|++.
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3334444444444444444433332 223333444444444444444444444433
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.86 E-value=0.00027 Score=62.98 Aligned_cols=100 Identities=12% Similarity=0.082 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
+...|..+...|.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|+..|+...+.. +.+..+|..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34556667777777777777777777776641 2245666777777777777777777777777765 4556777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 233 INCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
..+|.+.|++++|...|++.++..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 777777777777777777776543
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.86 E-value=0.00041 Score=59.39 Aligned_cols=98 Identities=13% Similarity=-0.075 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 269 (670)
+...+..+...+...|++++|...|....+.. +.+..+|..+..+|...|++++|...|++..+.... +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 44555566666666666666666666665544 344556666666666666666666666666554432 4455555555
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 005905 270 FAGHAGKVEAAFEILQEAKN 289 (670)
Q Consensus 270 ~~~~~g~~~~A~~i~~~m~~ 289 (670)
+|...|++++|...++...+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555666666555555543
No 165
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.85 E-value=0.00017 Score=60.90 Aligned_cols=27 Identities=11% Similarity=0.380 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
++..+..+|...|++++|.+.|+...+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.85 E-value=0.00014 Score=59.38 Aligned_cols=27 Identities=15% Similarity=-0.117 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhC-CChhHHHHHHHHHH
Q 005905 332 STMNALITALCDG-DQLPKTMEVLSDMK 358 (670)
Q Consensus 332 ~~~~~li~~~~~~-g~~~~A~~l~~~m~ 358 (670)
..|..+...|... |++++|++.|++..
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3333344444444 44444444444433
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.85 E-value=0.00018 Score=60.77 Aligned_cols=108 Identities=11% Similarity=0.067 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHH
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNI--KGT----PEV 228 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~----~~~ 228 (670)
..|..+...|...|++++|...|++..... +.+...+..+...+...|++++|...++.+.+... .++ ..+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 456667777777777777777777776541 33455666677777777777777777777665431 112 556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSAL 267 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 267 (670)
|..+..+|.+.|++++|...|++..+.. |+......+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 6667777777777777777777776653 344444333
No 168
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.83 E-value=0.00027 Score=61.35 Aligned_cols=96 Identities=16% Similarity=0.120 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAG 272 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 272 (670)
.+..+...+.+.|++++|...|+.....+ +.+...|..+..+|.+.|++++|...|++..+.... +...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 34445556666777777777777666654 455666666666777777777777777766665433 4455555666666
Q ss_pred hcCChHHHHHHHHHHHHC
Q 005905 273 HAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~ 290 (670)
..|++++|...|+...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666665543
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.82 E-value=0.00029 Score=59.93 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 301 SLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
.+...|.+.|++++|...|++..+.. +.+...|+.+..+|...|++++|++.|++.
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 33444444444444444444443332 113334444444444444444444444443
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.81 E-value=0.00041 Score=61.83 Aligned_cols=99 Identities=13% Similarity=-0.005 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005905 190 DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALID 269 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 269 (670)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++.++.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556667777777788888888887777765 456677777777777778888887777777766533 5666777777
Q ss_pred HHHhcCChHHHHHHHHHHHHC
Q 005905 270 FAGHAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 270 ~~~~~g~~~~A~~i~~~m~~~ 290 (670)
+|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777776654
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=0.0007 Score=58.55 Aligned_cols=96 Identities=13% Similarity=-0.023 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHH
Q 005905 226 PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD----EVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSS 301 (670)
Q Consensus 226 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~ 301 (670)
...+..+...+...|++++|...|++..+.. |+ ...+..+..+|...|++++|...++...+.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 3444444445555555555555555544432 22 2344444444444455555555444444432 223444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 005905 302 LMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
+..+|...|++++|...|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555554443
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.79 E-value=0.03 Score=55.73 Aligned_cols=185 Identities=5% Similarity=-0.026 Sum_probs=92.5
Q ss_pred hcCCHH-HHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhh----------HHHHHHHhhhC---CCCCHHHHHHHHHHH
Q 005905 37 RQGRIS-ECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKA----------IKEAFRFFKLV---PNPTLSTFNMLMSVC 102 (670)
Q Consensus 37 ~~g~~~-~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~---~~~~~~~y~~li~~~ 102 (670)
+.|.++ +|+++++.+...+ |.+.+.-..-..+....+. +++++.+++.+ .+.+..+|+.-.-++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455554 6788888887766 5443322211111111111 45555555543 234555555555555
Q ss_pred HcCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHH
Q 005905 103 ASSK--DSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFENVKPDRVVFNALITACGQSGA-VDRAFDVLAE 179 (670)
Q Consensus 103 ~~~g--~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~ 179 (670)
.+.+ .+++++..++.+.+.. +.|-.+|+.-.-.+...|. ++++++.++.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d----------------------------prNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD----------------------------ERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhC----------------------------CCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 5555 3556666666665543 1233333333333334444 4666666666
Q ss_pred HhhCCCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------
Q 005905 180 MNAEVHPVDPDHITIGALMKACANA--------------GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT------ 239 (670)
Q Consensus 180 m~~~~~~~~pd~~t~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~------ 239 (670)
+.... .-|...|+-....+.+. +.++++++.+....... +.|..+|+-+-..+.+.
T Consensus 171 ~I~~~---p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 171 LITRN---FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHC---SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHC---CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 66541 33444555444444333 34566666666666654 55666666544444443
Q ss_pred -----CCHHHHHHHHHHHHHC
Q 005905 240 -----GDWEFACSVYDDMTKK 255 (670)
Q Consensus 240 -----g~~~~A~~l~~~m~~~ 255 (670)
+.++++++.++++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhh
Confidence 2345555555555544
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.72 E-value=0.00029 Score=59.36 Aligned_cols=94 Identities=6% Similarity=-0.150 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005905 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237 (670)
Q Consensus 158 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 237 (670)
..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.+ +.+...+..+..+|.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE---PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344455666666666666666666531 2244555556666666666666666666666654 445556666666666
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 005905 238 QTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 238 ~~g~~~~A~~l~~~m~~~ 255 (670)
+.|++++|...|++.++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666543
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.69 E-value=0.0011 Score=55.96 Aligned_cols=93 Identities=9% Similarity=-0.052 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHH
Q 005905 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDH----ITIGALMKACANAGQVDRAREVYKMIHKYNIKGT---PEVYTI 231 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ 231 (670)
.+...+...|++++|...|++.... .|+. ..+..+..++...|++++|...|+.+.+.. +.+ ..++..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL----YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH----CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence 3456677788888888888887764 2332 356667777778888888888887777654 333 566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 232 AINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 232 li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
+..+|.+.|++++|...|+++.+..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7777778888888888888777654
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.66 E-value=0.00045 Score=58.15 Aligned_cols=95 Identities=9% Similarity=-0.060 Sum_probs=61.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH 273 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 273 (670)
+..+...+.+.|++++|...|+...+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 3344556666777777777777776654 445666666777777777777777777776665433 45566666666666
Q ss_pred cCChHHHHHHHHHHHHC
Q 005905 274 AGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 274 ~g~~~~A~~i~~~m~~~ 290 (670)
.|++++|...++...+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666666543
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.65 E-value=0.0003 Score=75.04 Aligned_cols=87 Identities=13% Similarity=0.011 Sum_probs=40.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 005905 164 CGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWE 243 (670)
Q Consensus 164 ~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 243 (670)
|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+..+|..+..+|.+.|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 344455555555555544421 1123444444444555555555555554444433 333444444444444445555
Q ss_pred HHHHHHHHHHH
Q 005905 244 FACSVYDDMTK 254 (670)
Q Consensus 244 ~A~~l~~~m~~ 254 (670)
+|.+.|++..+
T Consensus 92 eA~~~~~~al~ 102 (477)
T 1wao_1 92 AALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55544444443
No 177
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.63 E-value=0.00032 Score=61.56 Aligned_cols=97 Identities=14% Similarity=0.047 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHh----CCCCC-CHH
Q 005905 298 SYSSLMGACSNAKNWQKALELYEHMKSI----KLKP-TVSTMNALITALCDGDQLPKTMEVLSDMKS----LGLCP-NTI 367 (670)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~ 367 (670)
++..+...|...|++++|...|++..+. +..+ ....+..+...|...|++++|.+.+++..+ .+..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555555555555555555554321 0000 133455555666666666666666665543 11111 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 368 TYSILLVACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 368 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 394 (670)
++..+...+...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455556667777777777777766554
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.62 E-value=0.00041 Score=60.82 Aligned_cols=129 Identities=16% Similarity=0.008 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHH
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIK-GT----PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVI-PD----EVF 263 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t 263 (670)
+..+...+...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+.... .+ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 334444444455555555555444332100 00 124444555555555555555555554321100 01 123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 264 LSALIDFAGHAGKVEAAFEILQEAKNQ----GIS-VGIISYSSLMGACSNAKNWQKALELYEHM 322 (670)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~i~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (670)
+..+...+...|++++|...+++..+. +.. ....++..+...|...|++++|.+.+++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 333444444445555554444443321 100 01223444444445555555555554443
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.53 E-value=0.0033 Score=52.85 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=52.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 005905 197 LMKACANAGQVDRAREVYKMIHKYNIKGTP---EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD--EVFLSALIDFA 271 (670)
Q Consensus 197 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~ 271 (670)
+...+...|++++|...|+.+.+.. +.+. .++..+..+|.+.|++++|...|++..+...... ...+..+..++
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445556666666666666665543 2222 3555566666666666666666666655432210 34445555555
Q ss_pred HhcCChHHHHHHHHHHHHC
Q 005905 272 GHAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 272 ~~~g~~~~A~~i~~~m~~~ 290 (670)
...|++++|...++.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5666666666666655554
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.51 E-value=0.00084 Score=71.18 Aligned_cols=120 Identities=8% Similarity=-0.071 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD----------------HITIGALMKACANAGQVDRAREVYKMI 217 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd----------------~~t~~~li~~~~~~g~~~~A~~~~~~m 217 (670)
...|..+...|.+.|++++|+..|++.... .|+ ...|..+..+|.+.|++++|+..|+++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW----LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 345677777888888888888888887763 222 244445555555555555555555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005905 218 HKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEA 279 (670)
Q Consensus 218 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 279 (670)
.+.. +.+...|..+..+|...|++++|...|++.++.... +...+..+..++.+.++.++
T Consensus 344 l~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 344 LGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred HhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 5443 334445555555555555555555555555443221 22334444444444444433
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.51 E-value=0.00026 Score=75.54 Aligned_cols=119 Identities=12% Similarity=0.039 Sum_probs=74.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 313 (670)
..|.+.|++++|.+.|++..+.... +...|..+..+|.+.|++++|.+.+++..+.. +.+..++..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3445667777777777776665432 46666677777777777777777777777664 445667777777777778888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhCCChhHHHHHHH
Q 005905 314 KALELYEHMKSIKLKPTVSTMNALITA--LCDGDQLPKTMEVLS 355 (670)
Q Consensus 314 ~A~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~ 355 (670)
+|.+.|++..+... .+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88777777765432 133344444444 667777888888777
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.51 E-value=0.0013 Score=69.79 Aligned_cols=88 Identities=9% Similarity=-0.071 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005905 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITAL 341 (670)
Q Consensus 262 ~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 341 (670)
..|..+..+|.+.|++++|+..++.+.+.. +.+...|..+..+|...|++++|...|++..+... .+...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 445555555666666666666666655543 33455566666666666666666666666655432 2444555566666
Q ss_pred HhCCChhHHH
Q 005905 342 CDGDQLPKTM 351 (670)
Q Consensus 342 ~~~g~~~~A~ 351 (670)
.+.++.++|.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655554
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.48 E-value=0.0011 Score=68.06 Aligned_cols=85 Identities=12% Similarity=0.011 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGAC 306 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~ 306 (670)
.+|..+..+|.+.|++++|+..+++.++.... +...+..+..+|...|++++|...|+...+.. +.+...+..+...+
T Consensus 274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444444444445555555555444443221 33344444444444444444444444444432 22333333333333
Q ss_pred HhcCCHH
Q 005905 307 SNAKNWQ 313 (670)
Q Consensus 307 ~~~g~~~ 313 (670)
...++.+
T Consensus 352 ~~~~~~~ 358 (370)
T 1ihg_A 352 QKIKAQK 358 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.43 E-value=0.0014 Score=58.06 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.+|..+..+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|+..|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344555555555555555555555554443 22444555555555555555555555555444
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.43 E-value=0.0013 Score=67.49 Aligned_cols=126 Identities=6% Similarity=-0.026 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC------------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMNAEVH------------PVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYN 221 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~------------~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~ 221 (670)
..|..+...|.+.|++++|+..|++..+... ...| +...|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4577778888899999999999988875100 0122 34678888889999999999999999999876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005905 222 IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFE 282 (670)
Q Consensus 222 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 282 (670)
+.+..+|..+..+|...|++++|+..|++..+.... +...+..+..++...++.+++.+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999887543 66677777777766666665543
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.40 E-value=0.0018 Score=56.68 Aligned_cols=94 Identities=14% Similarity=0.043 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCC--------H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPD--------H-----ITIGALMKACANAGQVDRAREVYKMIHKY-- 220 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd--------~-----~t~~~li~~~~~~g~~~~A~~~~~~m~~~-- 220 (670)
.+......+.+.|++++|+..|++..+. .|+ . ..|..+..++.+.|++++|+..|+...+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l----~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI----SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH----HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh----CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 3455666777888888888888887764 333 2 26677777777777777777777777665
Q ss_pred -----CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 221 -----NIKGTPEVY----TIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 221 -----~~~~~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
+ +.+...| .....++...|++++|+..|++.++
T Consensus 89 ~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 89 RRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3 3344556 6666677777777777777776654
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.40 E-value=0.00026 Score=59.04 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHHCC--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 005905 275 GKVEAAFEILQEAKNQG--ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTME 352 (670)
Q Consensus 275 g~~~~A~~i~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 352 (670)
|++++|...|++..+.+ -+.+..++..+..+|...|++++|...|++..+..+ -+...+..+..+|...|++++|+.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHHH
Confidence 34444444444444432 122233444444455555555555555555444331 134444444555555555555555
Q ss_pred HHHHHHh
Q 005905 353 VLSDMKS 359 (670)
Q Consensus 353 l~~~m~~ 359 (670)
.|++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.40 E-value=0.0027 Score=56.21 Aligned_cols=61 Identities=21% Similarity=0.119 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~ 289 (670)
+|..+..+|.+.|++++|+..+++.++.... +...|..+..+|...|++++|...|....+
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3444444444444444444444444443321 334444444444444444444444444443
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.38 E-value=0.0073 Score=65.61 Aligned_cols=174 Identities=9% Similarity=-0.029 Sum_probs=127.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCCC-HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005905 168 GAVDRAFDVLAEMNAEVHPVDPD-HITIGALMKACANAGQ----------VDRAREVYKMIHKYNIKGTPEVYTIAINCC 236 (670)
Q Consensus 168 g~~~~A~~l~~~m~~~~~~~~pd-~~t~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 236 (670)
...++|++.++++... .|+ ...|+.--.++...|+ ++++.+.++.+.+.+ +-+..+|+.-.-++
T Consensus 43 ~~~eeal~~~~~~l~~----nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l 117 (567)
T 1dce_A 43 ELDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (567)
T ss_dssp CCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3457889999988874 455 3456655555666666 888999998888876 56778888888888
Q ss_pred HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc----
Q 005905 237 SQTG--DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG-KVEAAFEILQEAKNQGISVGIISYSSLMGACSNA---- 309 (670)
Q Consensus 237 ~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~---- 309 (670)
.+.+ +++++++.++++.+.... |...|+.---++.+.| ..+++++.+..+.+.. +-+...|+.....+.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCC
T ss_pred HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccc
Confidence 8888 678999999999888765 7777877777777778 7888888888887765 55677777776666553
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhH
Q 005905 310 ----------KNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPK 349 (670)
Q Consensus 310 ----------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 349 (670)
+.++++.+.+.+.....+ -|...|+.+-..+.+.++.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 456788888877776553 367778777777777666444
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.37 E-value=0.00032 Score=58.51 Aligned_cols=87 Identities=11% Similarity=-0.022 Sum_probs=41.6
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 005905 167 SGAVDRAFDVLAEMNAEVHPVDP-DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFA 245 (670)
Q Consensus 167 ~g~~~~A~~l~~~m~~~~~~~~p-d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 245 (670)
.|++++|+..|++..+.+.. .| +...+..+...|...|++++|...|++..+.. +.+..++..+..+|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQ-GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCC-CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35555555555555542100 12 23344445555555555555555555555543 33445555555555555555555
Q ss_pred HHHHHHHHHC
Q 005905 246 CSVYDDMTKK 255 (670)
Q Consensus 246 ~~l~~~m~~~ 255 (670)
...|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.31 E-value=0.00056 Score=69.31 Aligned_cols=149 Identities=10% Similarity=-0.029 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...|..+...|.+.|++++|+..|.+.... .|+... +...|+.+++...+ . ..+|+.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~----~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla 237 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY----MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH----SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHH
Confidence 445777788888999999999999998763 455332 11222333332221 1 13667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHH-HHhcCCH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGA-CSNAKNW 312 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~-~~~~g~~ 312 (670)
.+|.+.|++++|+..|++.++.... +...|..+..+|...|++++|...|+...+.. +.+..++..+... ....+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888877766432 66677777778888888888888887776543 2234445444444 2334566
Q ss_pred HHHHHHHHHHHhC
Q 005905 313 QKALELYEHMKSI 325 (670)
Q Consensus 313 ~~A~~~~~~m~~~ 325 (670)
+.+..+|..|...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 7777777777644
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.21 E-value=0.0012 Score=66.99 Aligned_cols=145 Identities=10% Similarity=-0.010 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACS 307 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~ 307 (670)
.+..+...+.+.|++++|...|++.++.. |+... +...++.+++...+. ..+|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 35555566666777777777777665542 22221 112222222222111 125566666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHH-HHhcCCHHHH
Q 005905 308 NAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI-TYSILLVA-CERKDDVEVG 385 (670)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a-~~~~g~~~~a 385 (670)
+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..|++..+ +.|+.. .+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776666543 23566666667777777777777777766654 234332 22222222 1234455666
Q ss_pred HHHHHHHHH
Q 005905 386 LMLLSQAKE 394 (670)
Q Consensus 386 ~~~~~~m~~ 394 (670)
..+|..|..
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 666666654
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.17 E-value=0.0025 Score=67.61 Aligned_cols=63 Identities=6% Similarity=-0.079 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCC-C-CHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKS-----IKLK-P-TVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~-p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.+++.|...|...|++++|+.+|++..+ .|.. | ...+.+.+-.++...+++++|..+|.++++
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444332 1211 1 122233344444455555555555555544
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.12 E-value=0.002 Score=68.41 Aligned_cols=123 Identities=8% Similarity=-0.013 Sum_probs=82.9
Q ss_pred hcCChHHHHHHHHHHHHC-----C--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CC-CHHHHHHHH
Q 005905 273 HAGKVEAAFEILQEAKNQ-----G--ISVGIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KP-TVSTMNALI 338 (670)
Q Consensus 273 ~~g~~~~A~~i~~~m~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p-~~~~~~~li 338 (670)
..|++++|..++++..+. | .+....+++.|...|...|++++|..++++..+ .|. .| ...+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 566777777776665432 1 112346788888888888888888888877653 221 12 346688888
Q ss_pred HHHHhCCChhHHHHHHHHHHh-----CCC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 339 TALCDGDQLPKTMEVLSDMKS-----LGL-CPNT-ITYSILLVACERKDDVEVGLMLLSQAKED 395 (670)
Q Consensus 339 ~~~~~~g~~~~A~~l~~~m~~-----~g~-~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 395 (670)
..|...|++++|+.++++..+ .|- .|+. .+...+-.++...+.+++|...|.++++.
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999988888653 231 1322 33445555667788889999988888763
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.11 E-value=0.0076 Score=52.74 Aligned_cols=62 Identities=10% Similarity=-0.071 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNIKG------TPE-----VYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~------~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
.+......+.+.|++++|...|++..+..... +.. .|+.+..++.+.|++++|+..|++.++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455666777788888888887777654221 222 555555555566666666655555544
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.08 E-value=0.018 Score=49.45 Aligned_cols=79 Identities=13% Similarity=0.030 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCC
Q 005905 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIKLKPTVSTMNALITALCD----GDQ 346 (670)
Q Consensus 275 g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~ 346 (670)
+..++|.+.|+...+.| +...+..|..+|.. .+++++|.+.|++..+.| +...+..|-..|.. .++
T Consensus 39 ~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d 112 (138)
T 1klx_A 39 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 112 (138)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcC
Confidence 33344444444444332 23333334444443 344444444444444322 33333444444443 344
Q ss_pred hhHHHHHHHHHHh
Q 005905 347 LPKTMEVLSDMKS 359 (670)
Q Consensus 347 ~~~A~~l~~~m~~ 359 (670)
.++|++.|++..+
T Consensus 113 ~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 113 EKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.01 E-value=0.034 Score=60.34 Aligned_cols=169 Identities=8% Similarity=-0.031 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-
Q 005905 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD----------WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAG- 275 (670)
Q Consensus 207 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g- 275 (670)
.++|.+.++.+...+ +.+..+|+.--.++...|+ ++++++.++++.+...+ +..+|..-.-++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 457788888888776 5566777776666666666 78888888888777655 6667766666667777
Q ss_pred -ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---------
Q 005905 276 -KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK-NWQKALELYEHMKSIKLKPTVSTMNALITALCDG--------- 344 (670)
Q Consensus 276 -~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------- 344 (670)
+++++++.++.+.+.. +-+..+|+.-...+.+.| .++++.+.++++.+..+ -|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccccccc
Confidence 5578888888877765 446677777666677777 77777777777776653 3677777666655542
Q ss_pred -----CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 005905 345 -----DQLPKTMEVLSDMKSLGLCP-NTITYSILLVACERKDD 381 (670)
Q Consensus 345 -----g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~ 381 (670)
+.++++++.+++.... .| |...|..+-..+.+.+.
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence 3345666666555542 23 33444443333444333
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.97 E-value=0.027 Score=48.20 Aligned_cols=110 Identities=12% Similarity=-0.033 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 005905 206 QVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGH----AGKVEAAF 281 (670)
Q Consensus 206 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~ 281 (670)
++++|.+.|++..+.+ .+... |-..|...+..++|.+.|++..+.| +...+..|-..|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3444555554444444 22211 3334444444444555555554443 33444444444444 45555555
Q ss_pred HHHHHHHHCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 005905 282 EILQEAKNQGISVGIISYSSLMGACSN----AKNWQKALELYEHMKSIK 326 (670)
Q Consensus 282 ~i~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 326 (670)
+.|+...+.| +...+..|..+|.. .+++++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 24444455555555 555556655555555443
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.00077 Score=55.06 Aligned_cols=91 Identities=8% Similarity=-0.000 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------H
Q 005905 153 DRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGT------P 226 (670)
Q Consensus 153 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~ 226 (670)
+...|..+...+...|++++|+..|++..... +.+...+..+..++...|++++|.+.|+...+.. +.+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHH
Confidence 34556666777777777777777777776541 2345566666677777777777777777776654 222 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACS 247 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~ 247 (670)
.++..+..++...|+.+.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHHhHhhhHh
Confidence 444444555555554444443
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.0014 Score=53.36 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
+..+...+...|++++|...++...+.. +.+..++..+..+|.+.|++++|...|++..+
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3333444444444444444444444332 22334444444444444444444444444443
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.86 E-value=0.013 Score=45.47 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 254 (670)
+..+...+...|++++|...|++..+.. +.+..++..+..+|.+.|++++|...|++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3333444444444444444444444332 22334444444444444444444444444443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.83 E-value=0.012 Score=45.65 Aligned_cols=83 Identities=18% Similarity=0.104 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAI 233 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 233 (670)
...|..+...|...|++++|+..|++..... +.+...+..+...+...|++++|...|++..+.. +.+..++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4577888889999999999999999998752 3356778888999999999999999999998875 55677777777
Q ss_pred HHHHhcC
Q 005905 234 NCCSQTG 240 (670)
Q Consensus 234 ~~~~~~g 240 (670)
.++.+.|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 7665543
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.80 E-value=0.011 Score=48.62 Aligned_cols=80 Identities=15% Similarity=0.050 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 172 RAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDD 251 (670)
Q Consensus 172 ~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 251 (670)
+|+..|++..+.. +.+...+..+...|...|++++|...|+...+.. +.+..+|..+..+|...|++++|...|++
T Consensus 3 ~a~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG---TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566777766541 2345667777777888888888888888777765 45567777788888888888888888877
Q ss_pred HHHC
Q 005905 252 MTKK 255 (670)
Q Consensus 252 m~~~ 255 (670)
..+.
T Consensus 79 al~~ 82 (115)
T 2kat_A 79 GLAA 82 (115)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7653
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.71 E-value=0.0095 Score=48.98 Aligned_cols=78 Identities=8% Similarity=-0.090 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005905 210 AREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289 (670)
Q Consensus 210 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~ 289 (670)
|...|+...+.. +.+...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|+...+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555443 344555666666666666666666666665554322 344555555555555555555555555443
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.61 E-value=0.012 Score=51.42 Aligned_cols=100 Identities=8% Similarity=0.037 Sum_probs=70.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 165 GQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQV----------DRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 165 ~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~----------~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
.+.+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++..+.+ +.+..+|..+-.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 34556888888888887752 33566777777777777654 58888888888876 556778888888
Q ss_pred HHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 235 CCSQTG-----------DWEFACSVYDDMTKKGVIPDEVFLSALIDF 270 (670)
Q Consensus 235 ~~~~~g-----------~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 270 (670)
+|...| ++++|+..|++.++. .|+...|...+..
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 887764 788888888887776 3455555444443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.54 E-value=0.0033 Score=54.91 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 380 DDVEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410 (670)
Q Consensus 380 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 410 (670)
|++++|.+.|++.++. .|+...|...+.+
T Consensus 105 g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 3566666666666553 3555566555555
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.30 E-value=0.012 Score=47.02 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 005905 295 GIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 358 (670)
+...+..+...|.+.|++++|...|++..+... .+...|..+..+|...|++++|++.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555666666666666666666666655432 244556666666666666666666666544
No 208
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.25 E-value=0.19 Score=56.97 Aligned_cols=149 Identities=13% Similarity=0.081 Sum_probs=80.1
Q ss_pred hhhhHHHHHH-HhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHhc--
Q 005905 73 SQKAIKEAFR-FFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFEN-- 149 (670)
Q Consensus 73 ~~~~~~~A~~-~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~~-- 149 (670)
..+++++|.+ ++..++ +......++..+.+.|.++.|+++.++ .. .-...+..+|+++.|++.
T Consensus 611 ~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHH
Confidence 3455666655 443332 011225555566666666666654421 10 112334556666666653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005905 150 VKPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229 (670)
Q Consensus 150 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 229 (670)
.-.+...|..+...+.+.|+++.|.++|.++.. |..+...+...|+.+...++-+.....|- +
T Consensus 677 ~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~ 739 (814)
T 3mkq_A 677 DESAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAKDAETTGK------F 739 (814)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------H
T ss_pred hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------h
Confidence 234667777777777777777777777777642 23344444456666655555554444431 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 005905 230 TIAINCCSQTGDWEFACSVYDDM 252 (670)
Q Consensus 230 ~~li~~~~~~g~~~~A~~l~~~m 252 (670)
+....+|.+.|++++|.+++.++
T Consensus 740 ~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 740 NLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Confidence 34444455566666666655443
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.23 E-value=0.026 Score=45.12 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 192 ITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMT 253 (670)
Q Consensus 192 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 253 (670)
..+..+...|...|++++|...|+...+.+ +.+..+|..+..+|.+.|++++|...|++..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444445555555555555555544443 2333445555555555555555555554443
No 210
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=95.94 E-value=0.014 Score=44.78 Aligned_cols=78 Identities=14% Similarity=0.225 Sum_probs=48.0
Q ss_pred eeccccCcchhhHHHHHHHHHHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhCCCCCCC
Q 005905 535 VVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQGN 614 (670)
Q Consensus 535 ~~~~~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~p~~~~ 614 (670)
.+|+++++...|.-.+...|..-..+.......+.+ .|+||+|.|+..-...|+.+|...|++.+..|.+
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v---------~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e- 71 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYL---------SVITGRGNHSQGGVARIKPAVIKYLISHSFRFSE- 71 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCCCCEE---------EEECCC---------CHHHHHHHHHHHTTCCEEE-
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCCceEE---------EEEECCCCCCCCCcchHHHHHHHHHHhCCCceee-
Confidence 479999999888777666666554433332234433 5788999886432234999999999998888742
Q ss_pred CccceEEe
Q 005905 615 GSYGKIRI 622 (670)
Q Consensus 615 ~~~g~~~~ 622 (670)
...|.|.+
T Consensus 72 ~n~G~l~V 79 (82)
T 3fau_A 72 IKPGCLKV 79 (82)
T ss_dssp EETTEEEE
T ss_pred CCCEEEEE
Confidence 13388875
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.58 E-value=0.15 Score=51.15 Aligned_cols=72 Identities=10% Similarity=-0.064 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 329 PTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404 (670)
Q Consensus 329 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 404 (670)
.+..+|..+...+...|++++|...+++.... .|+...|..+-..+.-.|++++|...|++.... .|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 34555555544444445555555555555553 255544544444555555555555555555543 2444443
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.38 E-value=0.041 Score=57.24 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=48.5
Q ss_pred cCChHHHHHHHHHHHHC---CCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CC-CHHHHHHHHH
Q 005905 274 AGKVEAAFEILQEAKNQ---GISV----GIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KP-TVSTMNALIT 339 (670)
Q Consensus 274 ~g~~~~A~~i~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p-~~~~~~~li~ 339 (670)
.|++++|..++++..+. -+.+ ...+++.|..+|...|++++|+.++++..+ .|. .| ...+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45666666666665432 1111 235666777777777777777777666542 121 11 2345666666
Q ss_pred HHHhCCChhHHHHHHHHHH
Q 005905 340 ALCDGDQLPKTMEVLSDMK 358 (670)
Q Consensus 340 ~~~~~g~~~~A~~l~~~m~ 358 (670)
.|...|++++|+.++++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666666544
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.33 E-value=0.11 Score=54.03 Aligned_cols=86 Identities=17% Similarity=0.091 Sum_probs=41.4
Q ss_pred HcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHH
Q 005905 203 NAGQVDRAREVYKMIHKYN---IKG----TPEVYTIAINCCSQTGDWEFACSVYDDMTKK-----GV-IPD-EVFLSALI 268 (670)
Q Consensus 203 ~~g~~~~A~~~~~~m~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~-~~t~~~li 268 (670)
+.|++++|+.++++..+.. +.+ ...+++.+..+|...|++++|+.++++.++. |. .|+ ..+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 3455555555555554321 111 1234555555555556666555555554421 11 111 23455555
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 005905 269 DFAGHAGKVEAAFEILQEAK 288 (670)
Q Consensus 269 ~~~~~~g~~~~A~~i~~~m~ 288 (670)
..|...|++++|..++++..
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 55666666666665555543
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.33 E-value=0.08 Score=55.09 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=37.4
Q ss_pred HHhcCChHHHHHHHHHHHHCC---CCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CC-CHHHHHH
Q 005905 271 AGHAGKVEAAFEILQEAKNQG---ISV----GIISYSSLMGACSNAKNWQKALELYEHMKS-----IKL-KP-TVSTMNA 336 (670)
Q Consensus 271 ~~~~g~~~~A~~i~~~m~~~~---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p-~~~~~~~ 336 (670)
+.+.|++++|..++++..+.. +.+ ...+++.|..+|...|++++|+.++++..+ .|. .| ...+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 334455555555555544321 111 123455555555555555555555554432 110 01 1233444
Q ss_pred HHHHHHhCCChhHHHHHHHH
Q 005905 337 LITALCDGDQLPKTMEVLSD 356 (670)
Q Consensus 337 li~~~~~~g~~~~A~~l~~~ 356 (670)
|...|...|++++|+.++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHH
Confidence 44444444444444444444
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.28 E-value=1.1 Score=44.70 Aligned_cols=74 Identities=8% Similarity=-0.103 Sum_probs=49.8
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 005905 293 SVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYS 370 (670)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 370 (670)
+.+..+|.++..++...|++++|...+++....+ |+...|..+-..+...|++++|.+.|++... +.|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 4456666666666666677777777777777663 5666666666677777777777777777665 356666653
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.14 E-value=0.046 Score=56.85 Aligned_cols=62 Identities=19% Similarity=0.128 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKK-----GV-IPD-EVFLSALIDFAGHAGKVEAAFEILQEAK 288 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~-~~t~~~li~~~~~~g~~~~A~~i~~~m~ 288 (670)
.+++.|..+|...|++++|..++++.++. |. .|+ ..+++.|...|...|++++|..++++..
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34556666666666666666666655431 21 111 2345566666666666666666666554
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.09 E-value=0.14 Score=40.13 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=23.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 201 CANAGQVDRAREVYKMIHKYNIKGTPE-VYTIAINCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
+.+.|++++|.+.|+.+.+.. +.+.. .|..+..+|...|++++|...|++..+.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334444444444444444432 22333 4444444444444444444444444433
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.98 E-value=0.064 Score=42.26 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=52.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 005905 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDP-DHI-TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY 229 (670)
Q Consensus 160 li~~~~~~g~~~~A~~l~~~m~~~~~~~~p-d~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 229 (670)
....+.+.|++++|+..|++.... .| +.. .+..+..++...|++++|.+.|+...+.. +.+..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 456788899999999999999875 34 456 78888899999999999999999998876 3344444
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.40 E-value=0.66 Score=52.48 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhc
Q 005905 230 TIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNA 309 (670)
Q Consensus 230 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~ 309 (670)
..++..+.+.|.++.|+++.+.-. .-...+...|+++.|+++.+.+ .+...|..+..++.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 445555555555555554442110 0012234456666666554322 2345666666666666
Q ss_pred CCHHHHHHHHHHHH
Q 005905 310 KNWQKALELYEHMK 323 (670)
Q Consensus 310 g~~~~A~~~~~~m~ 323 (670)
|+++.|.+.|..+.
T Consensus 695 ~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 695 FNFKLAIEAFTNAH 708 (814)
T ss_dssp TCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcc
Confidence 66666666666554
No 220
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=94.13 E-value=0.2 Score=39.57 Aligned_cols=80 Identities=15% Similarity=0.235 Sum_probs=55.0
Q ss_pred CeeeccccCcchhhHHHHHHHHHHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhCCCCC
Q 005905 533 PVVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQ 612 (670)
Q Consensus 533 ~~~~~~~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~p~~ 612 (670)
...+|+++++...|.-.+..+|.............+.+ .|+||+|.|+..-.+.|+++|...|++.+..|.
T Consensus 8 ~~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v---------~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~ 78 (96)
T 2d9i_A 8 QNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYL---------SVITGRGNHSQGGVARIKPAVIKYLISHSFRFS 78 (96)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEE---------EEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEE
T ss_pred CCeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEE---------EEEECcCCCCCCCcchHHHHHHHHHhhCCCccc
Confidence 34789999999999877767776655433322224433 578899998754334599999999999888774
Q ss_pred CCCccceEEe
Q 005905 613 GNGSYGKIRI 622 (670)
Q Consensus 613 ~~~~~g~~~~ 622 (670)
+. -.|.+.+
T Consensus 79 eg-g~Ga~~V 87 (96)
T 2d9i_A 79 EI-KPGCLKV 87 (96)
T ss_dssp CC-STTCEEE
T ss_pred cC-CCcEEEE
Confidence 22 2366654
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.12 E-value=0.58 Score=40.26 Aligned_cols=95 Identities=16% Similarity=0.068 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 005905 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGD---QLPKTMEVLSDMKSLGLCP--NTITYSILLVACERKDDVEVGL 386 (670)
Q Consensus 312 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~ 386 (670)
...+++-|.+..+.+. ++..+...+..++++.+ +.++++.+|++..+.. .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4566666776666553 67777777777888877 5668888888877753 24 2344445556778888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 387 MLLSQAKEDGVIPNLVMFKCIIGM 410 (670)
Q Consensus 387 ~~~~~m~~~g~~p~~~~~~~li~~ 410 (670)
++++.+.+ +.|+-.--..+...
T Consensus 92 ~y~~~lL~--ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQNNQAKELERL 113 (152)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHh--cCCCCHHHHHHHHH
Confidence 88888887 44655444444443
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.78 E-value=0.54 Score=36.77 Aligned_cols=66 Identities=6% Similarity=-0.040 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 005905 190 DHITIGALMKACANAGQ---VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKG 256 (670)
Q Consensus 190 d~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 256 (670)
|...+..+..++...++ .++|..++++..+.+ +.++.+...+...+.+.|++++|...|+++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34444555555543333 466666666666655 4455566666666666666666666666666543
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.74 E-value=2.2 Score=41.00 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CChhHHHHHHHHHHhC
Q 005905 297 ISYSSLMGACSNA-----KNWQKALELYEHMKSIKLKPTVSTMNALITALCDG-DQLPKTMEVLSDMKSL 360 (670)
Q Consensus 297 ~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~ 360 (670)
..|..|...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.++|.+.+++....
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 3455555555552 55555555555554443222244444444444442 5555555555555443
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.65 E-value=0.39 Score=41.32 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChhHHHH
Q 005905 278 EAAFEILQEAKNQGISVGIISYSSLMGACSNAK---NWQKALELYEHMKSIKLKP--TVSTMNALITALCDGDQLPKTME 352 (670)
Q Consensus 278 ~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 352 (670)
..+.+-|.+..+.+ .++..+...+..++++.+ +++++..+|+++.+.. .| +...+-.|..+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 44555555555555 356666666667777766 5557777777766543 13 23444556666777777777777
Q ss_pred HHHHHHhCCCCCC
Q 005905 353 VLSDMKSLGLCPN 365 (670)
Q Consensus 353 l~~~m~~~g~~p~ 365 (670)
.++.+.+ +.|+
T Consensus 93 y~~~lL~--ieP~ 103 (152)
T 1pc2_A 93 YVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHH--HCTT
T ss_pred HHHHHHh--cCCC
Confidence 7777776 3564
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.81 E-value=1.2 Score=35.52 Aligned_cols=64 Identities=11% Similarity=-0.058 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 005905 192 ITIGALMKACANAGQVDRAREVYKMIHKYN------IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKK 255 (670)
Q Consensus 192 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 255 (670)
..+..+...+.+.|+++.|...|+...+.- -.....++..+..+|.+.|+++.|...+++..+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344455566666666666666665554421 1223455666666666666666666666666554
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.45 E-value=0.82 Score=35.68 Aligned_cols=47 Identities=4% Similarity=0.006 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 312 WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 312 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.++|..+|++..+.. +.++.....+...+.+.|++++|+..|+++.+
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555555544443 12444444444455555555555555555544
No 227
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=92.29 E-value=0.23 Score=42.02 Aligned_cols=79 Identities=15% Similarity=0.239 Sum_probs=53.7
Q ss_pred eeeccccCcchhhHHHHHHHHHHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhCCCCCC
Q 005905 534 VVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLGLPYQG 613 (670)
Q Consensus 534 ~~~~~~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~p~~~ 613 (670)
..+|+++++...|.-.+..+|.............+.+ .|+||+|.++..-.+.|+.+|...|++.+..|.+
T Consensus 54 ~~LDLHGl~v~EA~~~L~~fL~~a~~~~~~~~g~~~v---------~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e 124 (135)
T 2vkc_A 54 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYL---------SVITGRGNHSQGGVARIKPAVIKYLISHSFRFSE 124 (135)
T ss_dssp TEEECTTCCHHHHHHHHHHHHHHHHHHHHHTCCCSEE---------EEECCSCSSSCCSCCTHHHHHHHHHHTTTCEEEE
T ss_pred ceEEeCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEE---------EEEECCCcCCCCCCchHHHHHHHHHhcCCCceee
Confidence 4789999999988877766776655433332334433 5788999876433345999999999988876632
Q ss_pred CCccceEEe
Q 005905 614 NGSYGKIRI 622 (670)
Q Consensus 614 ~~~~g~~~~ 622 (670)
. -.|.+.+
T Consensus 125 ~-g~G~~~V 132 (135)
T 2vkc_A 125 I-KPGCLKV 132 (135)
T ss_dssp C-STTEEEE
T ss_pred C-CCCeEEE
Confidence 2 2366654
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.26 E-value=5.6 Score=35.01 Aligned_cols=100 Identities=13% Similarity=0.155 Sum_probs=48.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005905 201 CANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAA 280 (670)
Q Consensus 201 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 280 (670)
....|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+... +..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666655443 2345566666666666666666666655431 12222234444555444
Q ss_pred HHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 281 FEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 281 ~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
.++-+.....| . +|.....+.-.|+++++.++|.+
T Consensus 80 ~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444433333 1 22333334445555555555543
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.18 E-value=4.5 Score=33.71 Aligned_cols=138 Identities=14% Similarity=0.049 Sum_probs=92.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 005905 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALEL 318 (670)
Q Consensus 239 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 318 (670)
.|..++..++..+..... +..-|+-+|--....-+-+-..++++.+-+ -.| ...||++......
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHHH
Confidence 466666666666665542 334444444333333444444443333321 112 1356777777666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 005905 319 YEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVI 398 (670)
Q Consensus 319 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~ 398 (670)
|-.+- .+....+..+..+...|+-+.-.+++.++.. ..+|+......+..||.+.|+..++.+++.++-+.|++
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 65543 4566778888899999999999999999654 35789999999999999999999999999999998853
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.76 E-value=2.6 Score=37.22 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005905 154 RVVFNALITACGQSGAVDRAFDVLAEM 180 (670)
Q Consensus 154 ~~~~~~li~~~~~~g~~~~A~~l~~~m 180 (670)
...|..|.......|+++-|.+.|...
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444455555555554443
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.67 E-value=1.3 Score=35.17 Aligned_cols=63 Identities=13% Similarity=0.047 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKSIK------LKPTVSTMNALITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.-+..|...+.+.|+++.|...|+...+.- -.+....+..|..+|.+.|++++|+.++++..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334455555555555555555555443210 012334445555555555555555555555544
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.57 E-value=1.3 Score=42.53 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhCCCCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C
Q 005905 170 VDRAFDVLAEMNAEVHPVDPD---HITIGALMKACANA-----GQVDRAREVYKMIHKYNIKGTPEVYTIAINCCSQT-G 240 (670)
Q Consensus 170 ~~~A~~l~~~m~~~~~~~~pd---~~t~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g 240 (670)
...|..++++..+ +.|+ ...|..+...|.+. |+.++|.+.|++..+.+...+..++......++.. |
T Consensus 179 l~~A~a~lerAle----LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD----LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH----HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH----hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 5678888888876 4676 55788888888884 99999999999999876433578888888888885 9
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 005905 241 DWEFACSVYDDMTKKGVI--PDEVFLSAL 267 (670)
Q Consensus 241 ~~~~A~~l~~~m~~~g~~--p~~~t~~~l 267 (670)
+.+++.+.+++.+..... |+....+.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 999999999999988776 775554443
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.06 E-value=6 Score=32.96 Aligned_cols=64 Identities=16% Similarity=0.044 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 005905 262 VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIK 326 (670)
Q Consensus 262 ~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 326 (670)
..+...++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 34444555555666666666666664332 24555555566666666666666666666655554
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.64 E-value=2.2 Score=36.33 Aligned_cols=53 Identities=13% Similarity=0.006 Sum_probs=30.7
Q ss_pred CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 005905 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLK 328 (670)
Q Consensus 275 g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 328 (670)
++.++|.++|+.+.+.+-.. ..+|.....--.+.|++..|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 55666666666665443222 555555555556666666666666666665543
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.32 E-value=16 Score=37.77 Aligned_cols=245 Identities=11% Similarity=0.127 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHHhhC---CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcC
Q 005905 168 GAVDRAFDVLAEMNAE---VHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN----CCSQTG 240 (670)
Q Consensus 168 g~~~~A~~l~~~m~~~---~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~----~~~~~g 240 (670)
|+++.|++.+-.+.+. +............++..|...++++...+.+..+.+..-.. ......++. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 4566776666554432 12233445567778888888888888877776655432121 222333333 222333
Q ss_pred CHHHHH--HHHHHHH--HCC-CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCcc---HHHHHHHHHHHH
Q 005905 241 DWEFAC--SVYDDMT--KKG-VIP---DEVFLSALIDFAGHAGKVEAAFEILQEAKNQ--GISVG---IISYSSLMGACS 307 (670)
Q Consensus 241 ~~~~A~--~l~~~m~--~~g-~~p---~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~--~~~~~---~~~~~~li~~~~ 307 (670)
..+... .+.+... ..| +-. .......|...|...|++.+|.+++..+... +.... +..+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 322211 1111110 011 111 1123456777888889999999999887543 21111 356777888999
Q ss_pred hcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCHHHHHH----HHHHH
Q 005905 308 NAKNWQKALELYEHMKS----IKLKPT--VSTMNALITALCDGDQLPKTMEVLSDMKSL-GLCPNTITYSI----LLVAC 376 (670)
Q Consensus 308 ~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~----ll~a~ 376 (670)
..+++..|..++.++.. ....|+ ...+..++..+...+++.+|.+.|.+.... ...-|...+.. ++.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~ 268 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFL 268 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 99999999999888642 222222 245677788888889999998888877541 11122222221 11121
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005905 377 ERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMCSR 413 (670)
Q Consensus 377 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~r 413 (670)
.-++....-..++........-++...|..++.+|..
T Consensus 269 iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~ 305 (445)
T 4b4t_P 269 VLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTT 305 (445)
T ss_dssp HHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHh
Confidence 1222212222233332222223567778888887754
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.71 E-value=3.7 Score=34.95 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCc
Q 005905 240 GDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISV 294 (670)
Q Consensus 240 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~ 294 (670)
+|.++|.++|+.+++.+-.. ...|....+.-.++|++..|.+++......+..|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 66777777777765543333 5556555566666777777777777777666444
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.54 E-value=8.5 Score=39.04 Aligned_cols=129 Identities=18% Similarity=0.018 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHH---hcCCHHHHHHHHHHHhhCCCC-CCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHH
Q 005905 153 DRVVFNALITACG---QSGAVDRAFDVLAEMNAEVHP-VDPDHITIGALMKACANAGQV-DRAREVYKMIHKYNIKGTPE 227 (670)
Q Consensus 153 ~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~~~~-~~pd~~t~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~ 227 (670)
|...|..++.... ..|+.+.|...+.+....-.| .-++... ..+ .....-+++... .
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~-----------~~w~~~~r~~l~~~~~-------~ 172 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-----------FQFVEPFATALVEDKV-------L 172 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-----------STTHHHHHHHHHHHHH-------H
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCc-----------hhHHHHHHHHHHHHHH-------H
Confidence 5556666654432 458888999988888765222 1122110 111 111122222221 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCccHHHHH
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN-----QGISVGIISYS 300 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~-----~~~~~~~~~~~ 300 (670)
+...++..+...|++.+|...+..+..... .+...+..+|.++.+.|+..+|++.|+...+ .|+.|...+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 455677888899999999999888877654 4888999999999999999999999988654 48889877653
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.50 E-value=2.6 Score=34.80 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=9.7
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 005905 375 ACERKDDVEVGLMLLSQAKE 394 (670)
Q Consensus 375 a~~~~g~~~~a~~~~~~m~~ 394 (670)
+|.+.|++++|.++++.+.+
T Consensus 83 g~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 44445555555555544444
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.23 E-value=4.2 Score=44.98 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=33.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 005905 305 ACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDM 357 (670)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 357 (670)
-|...|+++.|.++-++..... +-+-.+|..|..+|...|+++.|+-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445677777777766665543 224667777777777777777777766665
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=84.78 E-value=5.6 Score=32.80 Aligned_cols=96 Identities=9% Similarity=0.013 Sum_probs=67.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHH
Q 005905 267 LIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQK---ALELYEHMKSIKLKP--TVSTMNALITAL 341 (670)
Q Consensus 267 li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~li~~~ 341 (670)
+++.......+..+.+-|......|. ++..+-..+..++.+..+... +..+++++...+ .| .....-.|.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 34444445556667777776666563 666666677888888887665 888888887653 22 233444567788
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 342 CDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 342 ~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
.+.|++++|.+.++.+.+ +.|+.
T Consensus 85 yklg~Y~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHhhhHHHHHHHHHHHHH--hCCCC
Confidence 999999999999999888 46743
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.18 E-value=4.7 Score=44.59 Aligned_cols=128 Identities=16% Similarity=0.093 Sum_probs=82.9
Q ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHC------CCCC-CH----
Q 005905 195 GALMKACANAGQ-VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGD-WEFACSVYDDMTKK------GVIP-DE---- 261 (670)
Q Consensus 195 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~------g~~p-~~---- 261 (670)
..+++.+...++ ++.|.++|+++.+.....+.....++|..+.+.++ --+|..++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 455555655666 58899999998886532222233344544444432 22455555544321 1111 11
Q ss_pred ------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 262 ------VFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323 (670)
Q Consensus 262 ------~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (670)
..+..=.+.|...|+++.|+++-++....- +.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122222445667899999999999988764 6678899999999999999999999988874
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.62 E-value=4.1 Score=41.45 Aligned_cols=71 Identities=14% Similarity=0.022 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005905 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKE-----DGVIPNLVMFK 405 (670)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~ 405 (670)
...++..+...|++.+|+..+..+... -+-+...+..++.++.+.|+..+|++.|+...+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344556666667777776666666553 233556666677777777777777776665543 37777766543
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=79.31 E-value=60 Score=38.10 Aligned_cols=148 Identities=11% Similarity=0.010 Sum_probs=92.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-------------
Q 005905 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKY----N------------- 221 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~------------- 221 (670)
.++..+...+.++-|.++..-. +.+...--.+..+|...|++++|.+.|.+.... +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 3555566666666665544332 123333334555666777777777777554110 0
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005905 222 -----IKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDE----VFLSALIDFAGHAGKVEAAFEILQEAKNQGI 292 (670)
Q Consensus 222 -----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~ 292 (670)
...-..-|..++..+.+.+.++.+.++-...++....-+. ..|..+..++...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 0111234677888999999999988887766554322222 2578888999999999999998888776543
Q ss_pred CccHHHHHHHHHHHHhcCCHHHH
Q 005905 293 SVGIISYSSLMGACSNAKNWQKA 315 (670)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A 315 (670)
+ ......|+...|..|..+.-
T Consensus 970 r--~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHHH
T ss_pred H--HHHHHHHHHHHHhCCChhhh
Confidence 3 45566777777776665543
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=78.44 E-value=15 Score=28.79 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMK 323 (670)
Q Consensus 279 ~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (670)
+..+-+..+....+.|++.+..+.+.+|.+.+++..|.++|+.++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444555555566666666666666666666666666666555
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=77.77 E-value=15 Score=28.81 Aligned_cols=65 Identities=17% Similarity=0.262 Sum_probs=51.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 346 QLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411 (670)
Q Consensus 346 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (670)
+.-+..+-++.+....+.|+.....+.+.||.+.+++..|.++|+-.+.. +.+...+|..+++-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 44566777777777888999999999999999999999999999877753 224456788888754
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.80 E-value=20 Score=27.93 Aligned_cols=85 Identities=15% Similarity=0.030 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 005905 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355 (670)
Q Consensus 276 ~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 355 (670)
.-++|..|-+.+...+. ...+--.-+..+...|+|++|..+.+.+- .||...|-+|-. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555555542 22222222344556666666665554433 566666655433 34555555555555
Q ss_pred HHHhCCCCCCHHHH
Q 005905 356 DMKSLGLCPNTITY 369 (670)
Q Consensus 356 ~m~~~g~~p~~~t~ 369 (670)
++..+| .|....|
T Consensus 94 ~la~sg-~p~~q~F 106 (116)
T 2p58_C 94 RLARSQ-DPRIQTF 106 (116)
T ss_dssp HHTTCC-CHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 555544 3444444
No 247
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=70.65 E-value=0.043 Score=56.30 Aligned_cols=239 Identities=15% Similarity=0.139 Sum_probs=153.4
Q ss_pred HHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 005905 66 RFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA 145 (670)
Q Consensus 66 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 145 (670)
.+.++....+.+.+|++.|=+.. |+..|..+|.++.+.|.+++-+..+....+. ..+...=+.|+-+|++.+++.+
T Consensus 59 ~LgkAqL~~~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~e 134 (624)
T 3lvg_A 59 QLAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAE 134 (624)
T ss_dssp SHHHHTTTSSSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSST
T ss_pred HHHHHHHccCchHHHHHHHHhCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHH
Confidence 36666667777888877765444 4456889999999999999888877654443 3355666789999999999887
Q ss_pred HHhcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC------------------CCCCCCHHHHHHHHHHHHHcCC
Q 005905 146 MFENV-KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEV------------------HPVDPDHITIGALMKACANAGQ 206 (670)
Q Consensus 146 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~------------------~~~~pd~~t~~~li~~~~~~g~ 206 (670)
+.+-+ .||..-...+.+-|...|.++.|.-+|..+..-. -.-..+..||-.+-.+|...+.
T Consensus 135 lEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~E 214 (624)
T 3lvg_A 135 LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKE 214 (624)
T ss_dssp TTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCT
T ss_pred HHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchH
Confidence 76643 4777777788888888999888888877653210 0012345678888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005905 207 VDRAREVYKMIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQE 286 (670)
Q Consensus 207 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~ 286 (670)
+..|.-.--.+.-.. .-...++..|-..|.+++-+.+++.-... -....-.|+-|.-.|++- ++++..+.++.
T Consensus 215 frLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 215 FRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp TTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred HHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 777655443333221 11234667788888888888888776532 134566777777777665 34444333332
Q ss_pred HHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 005905 287 AKNQGISVGIISYSSLMGACSNAKNWQKALELYEH 321 (670)
Q Consensus 287 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (670)
... +.|. -.+|++|.+...|.++.-+|..
T Consensus 288 f~s---riNi---pKviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 288 FWS---RVNI---PKVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp SSS---SSCC---TTTHHHHTTTTCHHHHHHHHHH
T ss_pred HHH---hccH---HHHHHHHHHHhhHHHHHHHHhc
Confidence 111 1111 1345555555555555555443
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.37 E-value=19 Score=28.00 Aligned_cols=86 Identities=15% Similarity=0.061 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 005905 276 KVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLS 355 (670)
Q Consensus 276 ~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 355 (670)
.-++|..|-+.+...+. ...+--.-+..+...|+|++|..+.+.+- .||...|-+|-. .+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45566666666555542 22222222344556667777666554433 566666655533 35666666666665
Q ss_pred HHHhCCCCCCHHHHH
Q 005905 356 DMKSLGLCPNTITYS 370 (670)
Q Consensus 356 ~m~~~g~~p~~~t~~ 370 (670)
++..+| .|....|.
T Consensus 93 ~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 93 GLGGSS-DPALADFA 106 (115)
T ss_dssp HHHTCS-SHHHHHHH
T ss_pred HHHhCC-CHHHHHHH
Confidence 665554 44444443
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=69.42 E-value=46 Score=27.59 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 347 LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMFKCIIGMC 411 (670)
Q Consensus 347 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (670)
.-+..+-++.+....+.|+.......|.||.+.+++..|.++|+-.+.. ..+...+|..+++-+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 3355666777777788999999999999999999999999999887753 235566788888764
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=68.63 E-value=30 Score=28.69 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 279 AAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 279 ~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
+..+-+..+...++.|++.+..+.+.+|.+.+++..|.++|+-++.
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444445555556667777777777777777777777777776653
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=68.49 E-value=40 Score=26.26 Aligned_cols=80 Identities=20% Similarity=0.102 Sum_probs=60.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 005905 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (670)
Q Consensus 38 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~ 117 (670)
..+.++|.-+-+.+...+. ...+...-+.....+|++++|..+.+..+.||.+.|-+|-. .+.|-.+++..-+.+
T Consensus 19 ~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 4578899999888887762 33333222344567899999999999999999999977754 467888888888778
Q ss_pred HHHcC
Q 005905 118 VQEAG 122 (670)
Q Consensus 118 m~~~g 122 (670)
+-.+|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 87776
No 252
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=67.71 E-value=42 Score=26.19 Aligned_cols=80 Identities=11% Similarity=0.000 Sum_probs=58.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 005905 38 QGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRL 117 (670)
Q Consensus 38 ~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~ 117 (670)
..+.++|.-+-+.+...+. ...+...-+.....+|++++|..+.+..+.||.+.|-+|-. .+.|-.+++..-+.+
T Consensus 20 ~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 4578899999888887763 33333222344567899999999999999999999977754 356777777777767
Q ss_pred HHHcC
Q 005905 118 VQEAG 122 (670)
Q Consensus 118 m~~~g 122 (670)
+-.+|
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 76665
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.47 E-value=67 Score=37.71 Aligned_cols=89 Identities=11% Similarity=0.089 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 005905 296 IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPT----VSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371 (670)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 371 (670)
..-|.-++..+.+.+.++.+.++-....+.....+ ...|..+..++...|++++|...+-.+.....+ ...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHH
Confidence 34467777788888888887777665543221112 125778888888888888888888887765433 455666
Q ss_pred HHHHHHhcCCHHHHH
Q 005905 372 LLVACERKDDVEVGL 386 (670)
Q Consensus 372 ll~a~~~~g~~~~a~ 386 (670)
++..++..|..+.-.
T Consensus 977 LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 977 FVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHHCCHHHHH
T ss_pred HHHHHHhCCChhhhh
Confidence 666666666655443
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=62.40 E-value=61 Score=26.81 Aligned_cols=79 Identities=10% Similarity=0.051 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 328 KPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404 (670)
Q Consensus 328 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 404 (670)
.|+..+--.+..++.+... ..+++.+++++.+.+-.-....+-.+.-++.+.|++++|.++.+.+.+ +.|+-.--
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHHH
Confidence 3444444444445554443 334566666655543101223333444456666666666666666655 34554444
Q ss_pred HHHH
Q 005905 405 KCII 408 (670)
Q Consensus 405 ~~li 408 (670)
..|-
T Consensus 115 ~~Lk 118 (134)
T 3o48_A 115 GALK 118 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=61.99 E-value=52 Score=28.44 Aligned_cols=118 Identities=11% Similarity=0.091 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH-HH
Q 005905 194 IGALMKACANAGQVDRAREVYKMIHKYN-IKGTP-------EVYTIAINCCSQTGDWEFACSVYDDMTKKG-VIPDE-VF 263 (670)
Q Consensus 194 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-~t 263 (670)
+-.-+..+...|.++.|+-+.+.+.... ..++. .++..+.+++...+.+..|...|++.++.. .-+.. .+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3445667778888888888887754431 12331 245566778888888888888888864321 11111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 264 LSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
..++- ....... ......+..+---+..+|.+.+++++|..+++.+..
T Consensus 103 ~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 103 RPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 11110 0000000 011233445545577788888888888888887643
No 256
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=61.69 E-value=0.055 Score=55.54 Aligned_cols=269 Identities=13% Similarity=0.127 Sum_probs=138.2
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHh------cC
Q 005905 77 IKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDAMFE------NV 150 (670)
Q Consensus 77 ~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~~~~------~~ 150 (670)
++.|.++-++...|. .|..|..+....+.+.+|+.-|-+ . -|...|..+|.++.+.|.+++... ..
T Consensus 41 ldRa~eyA~~~n~p~--VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~ 112 (624)
T 3lvg_A 41 LDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 112 (624)
T ss_dssp STTTTTSSSSCCCCC--CSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT
T ss_pred cHHHHHHHHHhCCcc--HHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 334444444443443 466666776666666666554411 1 233445556666666665554332 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 005905 151 KPDRVVFNALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYT 230 (670)
Q Consensus 151 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 230 (670)
..+...=+.|+-+|++.++..+-.+ ... .||..-...+.+-|...|.++.|.-+|..+.. |.
T Consensus 113 ~ke~~IDteLi~ayAk~~rL~elEe----fl~-----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~a 174 (624)
T 3lvg_A 113 ARESYVETELIFALAKTNRLAELEE----FIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FG 174 (624)
T ss_dssp CCSTTTTHHHHHHHHTSCSSSTTTS----TTS-----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CT
T ss_pred hcccccHHHHHHHHHhhCcHHHHHH----HHc-----CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HH
Confidence 2233333455555665555443211 111 24444444555555555555555555443321 22
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcC
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAK 310 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g 310 (670)
-|...+.+.|++..|.+.-++ .-+..||-.+-.+|...+.+..|.-.--.++-..-. ...++..|-..|
T Consensus 175 kLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvhade-----L~elv~~YE~~G 243 (624)
T 3lvg_A 175 RLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE-----LEELINYYQDRG 243 (624)
T ss_dssp TTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC-----CSGGGSSSSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHH-----HHHHHHHHHhCC
Confidence 233344445555544432221 124567888888888888777665443333322111 124566678888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 005905 311 NWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLS 390 (670)
Q Consensus 311 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 390 (670)
.+++-..+++.-.... +...-.|+.|.-.|++- ++++.++.++..-. +.| .--++++|.....+.++.-++.
T Consensus 244 ~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~s---riN---ipKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 244 YFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWS---RVN---IPKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp CCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS---SSC---CTTTHHHHTTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH---hcc---HHHHHHHHHHHhhHHHHHHHHh
Confidence 8888888888765332 45777888888888776 34544444433211 111 1235566666666666555443
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.58 E-value=44 Score=34.16 Aligned_cols=98 Identities=12% Similarity=-0.036 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHH--HH
Q 005905 193 TIGALMKACANAGQVDRAREVYKMIHKYNI--KGTPEVYTIAINCCSQTGDWEFACSVYDDMTK---KGVIPDEVF--LS 265 (670)
Q Consensus 193 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t--~~ 265 (670)
+...+...|.+.|+++.|.+.|.++...-. ..-...+-.+|..+...+++..+...+.+... .+..|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445566777777777777777777765322 22345666777777777788777777776642 232222211 01
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC
Q 005905 266 ALIDFAGHAGKVEAAFEILQEAKNQ 290 (670)
Q Consensus 266 ~li~~~~~~g~~~~A~~i~~~m~~~ 290 (670)
.-.-.+...+++..|...|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111233457777777777666544
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.36 E-value=98 Score=31.52 Aligned_cols=98 Identities=12% Similarity=0.039 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCccHHH--H
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVI--PDEVFLSALIDFAGHAGKVEAAFEILQEAKNQ---GISVGIIS--Y 299 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~---~~~~~~~~--~ 299 (670)
.+...+...|.+.|+++.|.+.|.++...... --...+-.+|..+...+++..+...+..+... +..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677889999999999999999999865332 23457778889999999999999998887542 32333221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 005905 300 SSLMGACSNAKNWQKALELYEHMKS 324 (670)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~ 324 (670)
..-...+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122234567899999988887654
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=55.42 E-value=16 Score=34.40 Aligned_cols=52 Identities=12% Similarity=0.259 Sum_probs=39.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhh
Q 005905 32 YNRLIRQGRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFK 85 (670)
Q Consensus 32 ~~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 85 (670)
.+.+++.|++++|++....-.+.. |.+......++++++-.|+++.|..-++
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~ 55 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLM 55 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 456778899999999998888887 7777777777777777777777766544
No 260
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=54.98 E-value=89 Score=25.82 Aligned_cols=73 Identities=5% Similarity=-0.065 Sum_probs=50.6
Q ss_pred CccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH
Q 005905 293 SVGIISYSSLMGACSNAKN---WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTI 367 (670)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 367 (670)
.|+..+--.+..++.+..+ ..++..+++++.+.+..-....+-.|..|+.+.|++++|.+..+.+.+ +.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 5556665566667777665 456788888877654222345556677788899999999999988887 467643
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=54.74 E-value=42 Score=31.65 Aligned_cols=52 Identities=21% Similarity=0.193 Sum_probs=24.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005905 237 SQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKN 289 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~ 289 (670)
.+.|++++|++....-++.... |...=..+++.+|-.|+++.|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445555555544444444322 444444445555555555555544444443
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=54.60 E-value=22 Score=31.89 Aligned_cols=62 Identities=16% Similarity=0.151 Sum_probs=41.5
Q ss_pred hhhHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhC
Q 005905 26 SEQLHSYNRLIRQ---GRISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLV 87 (670)
Q Consensus 26 ~~~~~~~~~l~~~---g~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 87 (670)
.-++..|-.+++. +...++.++|.-|...|+-...+.++......+...|++.+|.++|+..
T Consensus 77 ~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 141 (202)
T 3esl_A 77 PRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG 141 (202)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777666653 3367888888888777765555666666666666677777777776654
No 263
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=51.54 E-value=1.2e+02 Score=30.08 Aligned_cols=77 Identities=12% Similarity=0.174 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005905 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD--VEVGLMLLSQAKEDGVIPNLVMFKCIIGM 410 (670)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 410 (670)
..+.++.-|...|+.++|.+.++++....+. ..+....+..+.-+.++ .+...+++..+.+.|+-+.......+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3467777888888888888888888632222 23445555556655433 45677888888877776655555444444
No 264
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=50.71 E-value=1.1e+02 Score=25.62 Aligned_cols=78 Identities=10% Similarity=0.061 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 005905 328 KPTVSTMNALITALCDGDQ---LPKTMEVLSDMKSLGLCPNTITYSILLVACERKDDVEVGLMLLSQAKEDGVIPNLVMF 404 (670)
Q Consensus 328 ~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 404 (670)
.|+..+--.+..++.+... ..+++.+++++...+-.-.....-.+.-++.+.|++++|.++.+.+.+ +.|+-.--
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHH
Confidence 3454444445555555543 335666666665532111222223344466677777777777776666 34554433
Q ss_pred HHH
Q 005905 405 KCI 407 (670)
Q Consensus 405 ~~l 407 (670)
..|
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=49.10 E-value=3.4e+02 Score=30.76 Aligned_cols=168 Identities=9% Similarity=0.077 Sum_probs=97.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhc
Q 005905 200 ACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCC--SQTGDWEFACSVYDDMTKKGVIPDEVFLS---ALIDFAGHA 274 (670)
Q Consensus 200 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---~li~~~~~~ 274 (670)
.+...|+-+....++..+.+.. +..+...+.-++ ...|+.+.+..+.+.+.... .|. .-|. ++.-+|+..
T Consensus 499 i~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGT 573 (963)
T 4ady_A 499 CMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTS
T ss_pred hhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCC
Confidence 3445677777777777666532 223333333333 35688888888888776541 122 2222 233456777
Q ss_pred CChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh-hHHHHH
Q 005905 275 GKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL-PKTMEV 353 (670)
Q Consensus 275 g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l 353 (670)
|+.....+++..+.... ..++.-...+.-++...|+.+.+.++++.+.+.+ .|.+..--++.-+....|.. .+|+++
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 88777777888777643 2333333333334445677666777777665544 45555555556666666665 578888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHH
Q 005905 354 LSDMKSLGLCPNTITYSILLVACE 377 (670)
Q Consensus 354 ~~~m~~~g~~p~~~t~~~ll~a~~ 377 (670)
+..+.. .+|..+-..-+.+++
T Consensus 652 L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 652 LDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp HHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHcc---CCCHHHHHHHHHHHH
Confidence 888874 456655544444444
No 266
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.73 E-value=2.3e+02 Score=28.82 Aligned_cols=163 Identities=7% Similarity=0.046 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCcc--H
Q 005905 228 VYTIAINCCSQTGDWEFACSVYDDMTKK--GVIPD---EVFLSALIDFAGHAGKVEAAFEILQEAKN----QGISVG--I 296 (670)
Q Consensus 228 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~li~~~~~~g~~~~A~~i~~~m~~----~~~~~~--~ 296 (670)
....|...|...|++.+|.+++.++... |.... ...+...+..|...+++..|..++..+.. ....|+ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456788888999999999999888642 22211 23566778888899999999988887642 222333 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHH----HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 005905 297 ISYSSLMGACSNAKNWQKALELYEHMKSI-KLKPTVSTMNA----LITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSI 371 (670)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~----li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 371 (670)
..|...+..+...+++.+|.+.|.++-+. ...-|...+.. ++.+..-.+....--.++........-++...|..
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~ 298 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHH
Confidence 45677778888889999998888776431 01113222222 22222223333333333333332222356677778
Q ss_pred HHHHHHhc--CCHHHHHHHHH
Q 005905 372 LLVACERK--DDVEVGLMLLS 390 (670)
Q Consensus 372 ll~a~~~~--g~~~~a~~~~~ 390 (670)
++.+|... .+++...+.|.
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~ 319 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYE 319 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTC
T ss_pred HHHHHHhchHhhhHHHHHHHH
Confidence 88887654 34555555553
No 267
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.12 E-value=2.1e+02 Score=28.16 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005905 156 VFNALITACGQSGAVDRAFDVLAEMNA 182 (670)
Q Consensus 156 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 182 (670)
....+|.-|...++.++|...++++..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 456788889999999999999988753
No 268
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=45.60 E-value=1.5e+02 Score=25.62 Aligned_cols=59 Identities=8% Similarity=0.003 Sum_probs=38.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005905 160 LITACGQSGAVDRAFDVLAEMNAEVHPVDPDH-------ITIGALMKACANAGQVDRAREVYKMIHK 219 (670)
Q Consensus 160 li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~-------~t~~~li~~~~~~g~~~~A~~~~~~m~~ 219 (670)
-+..+...|.++.|.-+.+.+.... +..|+. .++..+.+++...+++..|...|++..+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~-~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLS-NNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-HHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhh-cCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3566677788888777766644320 123332 2455667788899999999999988644
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=45.37 E-value=1.7e+02 Score=26.16 Aligned_cols=57 Identities=9% Similarity=0.037 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 005905 204 AGQVDRAREVYKMIHKYNIKG-TPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPD 260 (670)
Q Consensus 204 ~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 260 (670)
++...++.++|..|...++-. -..-|......+...|++.+|.++|+.-++.+..|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344667888888887766533 244566777777778888888888888777777763
No 270
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.43 E-value=26 Score=29.82 Aligned_cols=38 Identities=8% Similarity=-0.061 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCH
Q 005905 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADC 127 (670)
Q Consensus 90 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 127 (670)
.-...|..-...+-..|++.+|..+|+.-++.+-.|-.
T Consensus 99 ~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 99 LSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 44556777777777788888888888888777766643
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=40.42 E-value=2.9e+02 Score=27.58 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005905 155 VVFNALITACGQSGAVDRAFDVLAEMN 181 (670)
Q Consensus 155 ~~~~~li~~~~~~g~~~~A~~l~~~m~ 181 (670)
.+...|...|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445566777777777777777777664
No 272
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.67 E-value=1.8e+02 Score=26.65 Aligned_cols=92 Identities=9% Similarity=0.026 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005905 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDP----DHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAIN 234 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~p----d~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 234 (670)
--++.+....++++|++++++..+.-.++++ +.......+..-.....-.-+..+.+++.. ..+...-...+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3467778888888888888776543111121 111222223333332333333444444422 334455555666
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 005905 235 CCSQTGDWEFACSVYDDMT 253 (670)
Q Consensus 235 ~~~~~g~~~~A~~l~~~m~ 253 (670)
.+.+.|+.++|.++|=+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 7777777777777775543
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.47 E-value=37 Score=29.30 Aligned_cols=39 Identities=3% Similarity=-0.111 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHH
Q 005905 90 PTLSTFNMLMSVCASSKDSEGAFQVLRLVQEAGLKADCK 128 (670)
Q Consensus 90 ~~~~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 128 (670)
.-...|..-...+-..|++.+|..+|+.-++.+-.|-..
T Consensus 94 ~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 94 SLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 344556666666666777777777777777766666443
No 274
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=37.12 E-value=1.8e+02 Score=24.27 Aligned_cols=22 Identities=0% Similarity=-0.078 Sum_probs=9.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHh
Q 005905 338 ITALCDGDQLPKTMEVLSDMKS 359 (670)
Q Consensus 338 i~~~~~~g~~~~A~~l~~~m~~ 359 (670)
.-++.+.|++++|.+..+.+.+
T Consensus 84 Avg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 84 TIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3344444444444444444443
No 275
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.85 E-value=2.2e+02 Score=25.29 Aligned_cols=32 Identities=9% Similarity=-0.016 Sum_probs=17.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 239 TGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271 (670)
Q Consensus 239 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 271 (670)
..|++.|+-.+.+|++.| .|....=..++-+.
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~As 58 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGY 58 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Confidence 466677777777777776 44333333333333
No 276
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=35.65 E-value=33 Score=31.19 Aligned_cols=25 Identities=4% Similarity=0.158 Sum_probs=14.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Q 005905 198 MKACANAGQVDRAREVYKMIHKYNI 222 (670)
Q Consensus 198 i~~~~~~g~~~~A~~~~~~m~~~~~ 222 (670)
+...+..|+.+.+..+++.+.+.+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~ 37 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGR 37 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3444556777666666665555443
No 277
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=33.25 E-value=1.4e+02 Score=24.72 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=39.8
Q ss_pred eeeccccCcchhhHHHHHHHHHHHHHhhhhCCCCCCceEeccCccceeecCCCcchhhhhHhhhHHHHHHHHHhC
Q 005905 534 VVVDARKLEIHTAKVYLLTILKGLRHRLAAGAKLPNVNILLPVEKTQIMSVGGEKTIDIAERTTQAIAALLRRLG 608 (670)
Q Consensus 534 ~~~~~~~~~~~~~~i~~l~~l~~l~~~~~~~~~~p~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~ 608 (670)
..+|++++....|.-.+...|. ..... | +..+ .|++|+|.++....+-|++.|...|++..
T Consensus 48 ~~LDLHG~~~~EA~~~L~~fL~---~a~~~-g-~r~V---------~IIHGKG~gs~~~~~vLk~~V~~wL~~~~ 108 (137)
T 3qd7_X 48 ASLNLLRQPVEECRKMVFSFIQ---QALAD-G-LRNV---------LIIHGKGRDDKSHANIVRSYVARWLTEFD 108 (137)
T ss_dssp GEEECTTCCHHHHHHHHHHHHH---HHHHT-T-CSEE---------EEECCCCSSTTSHHHHHHHHHHHHHHTST
T ss_pred eEEECCCCCHHHHHHHHHHHHH---HHHHC-C-CCEE---------EEEECCCCCCCCchHHHHHHHHHHHhcCC
Confidence 3789999999877766433332 22222 2 2333 47789998764433449999999999743
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.79 E-value=1e+02 Score=28.05 Aligned_cols=33 Identities=12% Similarity=-0.053 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 005905 93 STFNMLMSVCASSKDSEGAFQVLRLVQEAGLKA 125 (670)
Q Consensus 93 ~~y~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 125 (670)
..|......+-..|++.+|..+|+.-++.+-.|
T Consensus 151 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 151 IFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334444444555555555555555555554444
No 279
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.28 E-value=2.3e+02 Score=25.11 Aligned_cols=40 Identities=18% Similarity=-0.006 Sum_probs=24.1
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 232 AINCCS---QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271 (670)
Q Consensus 232 li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 271 (670)
+|+++. +..|++.|+-.+.+|++.|-.|....=..++-+.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 344443 3477888888888888887665444434344333
No 280
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=30.21 E-value=1.7e+02 Score=23.94 Aligned_cols=25 Identities=12% Similarity=0.127 Sum_probs=14.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMT 253 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~ 253 (670)
.+.++.-|...|+.++|...++++.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3445555666666666666666653
No 281
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=29.64 E-value=4.3e+02 Score=26.32 Aligned_cols=167 Identities=10% Similarity=-0.011 Sum_probs=85.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCccHHHHH---
Q 005905 231 IAINCCSQTGDWEFACSVYDDMTKKGVIPD-----EVFLSALIDFAGHAGKVEAAFEILQEAKNQG--ISVGIISYS--- 300 (670)
Q Consensus 231 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~--~~~~~~~~~--- 300 (670)
-++..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++.++...+....... +.+++.+..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 467788888888888888877765311111 1245556667778888888888777664331 223332221
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHHHh----CCCCC---CHHHHHHHHHHHHhCCChhHHHHHHH-HH-HhCCCCCCHHHH
Q 005905 301 -SLMGACS-NAKNWQKALELYEHMKS----IKLKP---TVSTMNALITALCDGDQLPKTMEVLS-DM-KSLGLCPNTITY 369 (670)
Q Consensus 301 -~li~~~~-~~g~~~~A~~~~~~m~~----~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~-~m-~~~g~~p~~~t~ 369 (670)
.-..++. ..+++..|...|-+.-+ .+ .| +...|.. +.+... ++..+.-.++. .. ... ..|....+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYlv-L~aLl~-~~r~el~~~l~~~~~~~~-~~pei~~l 259 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYML-LCKIML-GQSDDVNQLVSGKLAITY-SGRDIDAM 259 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHH-HHHHHT-TCGGGHHHHHHSHHHHTT-CSHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHHH-HHHHHc-CCHHHHHHHhcccccccc-CCccHHHH
Confidence 1122345 67888888777665431 11 01 1222322 222222 23333333222 11 111 24555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 005905 370 SILLVACERKDDVEVGLMLLSQAKEDGVIPNLVM 403 (670)
Q Consensus 370 ~~ll~a~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 403 (670)
..++.++ +.+++.+...+++.... .+..|...
T Consensus 260 ~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l 291 (394)
T 3txn_A 260 KSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIV 291 (394)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHH
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHH
Confidence 5666554 55677666666554322 34455543
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.93 E-value=2.6e+02 Score=23.54 Aligned_cols=71 Identities=13% Similarity=0.182 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHH
Q 005905 333 TMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD--VEVGLMLLSQAKEDGVIPNLVMF 404 (670)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~ 404 (670)
..+.++.-|...|+.++|.+.++++.... .-..+....+..++-+.++ .+....++..+.+.|+-+.....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~ 83 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 83 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 34567777888888888888888875211 1123444555556655432 45667777777777765544433
No 283
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=28.14 E-value=4.2e+02 Score=25.72 Aligned_cols=147 Identities=11% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCccHHHHHHH
Q 005905 227 EVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEIL----QEAKNQGISVGIISYSSL 302 (670)
Q Consensus 227 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~----~~m~~~~~~~~~~~~~~l 302 (670)
.+|.++..=|.+.+++++|++++..--.. +.+.|+...|-++- +-..+.++++|......|
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~~---------------ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQT---------------LLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q ss_pred HHHHHhcCC--------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005905 303 MGACSNAKN--------WQKALELYEHMKSIKLKPTVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLV 374 (670)
Q Consensus 303 i~~~~~~g~--------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 374 (670)
+..+..... +++|.+.=.+ ......-|......+...|.+.+++.+|...|- .|-.+...+|..++.
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKK-FGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEY 175 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHH-HSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHH
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 005905 375 ACERKDDVEVGLMLLSQAK 393 (670)
Q Consensus 375 a~~~~g~~~~a~~~~~~m~ 393 (670)
.+...+...++--++.+.+
T Consensus 176 ew~~~~~~~e~dlfiaRaV 194 (336)
T 3lpz_A 176 EWYKQDESHTAPLYCARAV 194 (336)
T ss_dssp HHHHTSCGGGHHHHHHHHH
T ss_pred HHHHhcCCccHHHHHHHHH
No 284
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=27.69 E-value=2e+02 Score=21.72 Aligned_cols=63 Identities=11% Similarity=0.147 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHH
Q 005905 44 CIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGA 111 (670)
Q Consensus 44 A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A 111 (670)
.-.+++.+.+.|+..... ... .-......+.|.++++.++.....+|..++.++...+...-|
T Consensus 24 v~~lld~L~~~~vlt~~~-~e~----I~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISE-EEK----VRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSSCHHH-HHH----HHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCCCHHH-HHH----HHcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 446888888888764322 221 122356788899999999888888999999999887765444
No 285
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=26.71 E-value=2.8e+02 Score=24.82 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=23.8
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005905 232 AINCCS---QTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFA 271 (670)
Q Consensus 232 li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 271 (670)
+|+++. +..|++.|+-.+.+|++.|-.|....=..++-++
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~As 80 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISAC 80 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 444443 3467788888888888777665444434444443
No 286
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.52 E-value=1.5e+02 Score=22.81 Aligned_cols=65 Identities=9% Similarity=0.029 Sum_probs=44.2
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 005905 46 DLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVCASSKDSEGAFQ 113 (670)
Q Consensus 46 ~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~~~~g~~~~A~~ 113 (670)
.+++.+.+.|+..... ... +.........+.|.++++.++.....+|..++.++...++..-|..
T Consensus 25 ~vld~L~~~~vlt~~~-~e~--I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSRELFRPHM-IED--IQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTSSCHHH-HHH--HHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCCCHHH-HHH--HHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 4788888888753322 111 1111012478899999999988878899999999988787765543
No 287
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=26.29 E-value=2.6e+02 Score=24.31 Aligned_cols=29 Identities=14% Similarity=-0.048 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 005905 92 LSTFNMLMSVCASSKDSEGAFQVLRLVQE 120 (670)
Q Consensus 92 ~~~y~~li~~~~~~g~~~~A~~~~~~m~~ 120 (670)
.+-|+.+...|...|+.++|+..|..--.
T Consensus 114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 114 EFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 34577778888999999999988865443
No 288
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.22 E-value=5.9e+02 Score=28.74 Aligned_cols=142 Identities=11% Similarity=0.008 Sum_probs=79.4
Q ss_pred HHHHHHHHhcCC---hHHHHHHHHHHHHCC----CCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005905 265 SALIDFAGHAGK---VEAAFEILQEAKNQG----ISVGIISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNAL 337 (670)
Q Consensus 265 ~~li~~~~~~g~---~~~A~~i~~~m~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 337 (670)
..++...|..|. .+.|.+.|+.....+ ++||.. ..+...-.+.|..++-..+++..+.. .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 345666777776 457778887766532 455532 22233334567777766777777753 355556778
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHH
Q 005905 338 ITALCDGDQLPKTMEVLSDMKSLG-LCPNTITYSILLVACER-KDDVEVGLMLLSQAKE---DGVIPNLVMFKCIIGMCS 412 (670)
Q Consensus 338 i~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~ 412 (670)
+.+++...+.....++++...... +++.... .++.+... .-..+.+++++..=-+ ..+......+..+|....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~--~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQDAT--STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGGHH--HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhhHH--HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888888888887777777765432 4443222 22333332 2234556666543111 112233345666776665
Q ss_pred h
Q 005905 413 R 413 (670)
Q Consensus 413 r 413 (670)
.
T Consensus 843 ~ 843 (909)
T 4fke_A 843 R 843 (909)
T ss_dssp T
T ss_pred H
Confidence 4
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.16 E-value=1.3e+02 Score=25.41 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCC
Q 005905 229 YTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK--VEAAFEILQEAKNQG 291 (670)
Q Consensus 229 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~A~~i~~~m~~~~ 291 (670)
.+.++.-|...|+.++|...++++...... ...+...+..+.-+.+. .+.+..++..+.+.+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~ 75 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 75 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 345566666666666666666665321111 12233333333333222 234455555555554
No 290
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.05 E-value=2.5e+02 Score=23.24 Aligned_cols=60 Identities=10% Similarity=0.036 Sum_probs=34.1
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005905 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276 (670)
Q Consensus 216 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 276 (670)
.+.+.|++.+. .-..++..+...+..-.|.++++.+.+.+...+..|...-|+.+...|-
T Consensus 12 ~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 34555655553 2334455555555556677777777666655566665555555555543
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=24.17 E-value=3.7e+02 Score=24.57 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005905 295 GIISYSSLMGACSNAKNWQKALELYEHMK 323 (670)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (670)
+.......+..+.+.|+.++|.++|-+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 34444455566666666666666665543
No 292
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=24.05 E-value=66 Score=29.86 Aligned_cols=188 Identities=13% Similarity=0.040 Sum_probs=81.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHH
Q 005905 159 ALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPE--VYTIAINCC 236 (670)
Q Consensus 159 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~ 236 (670)
+.+...++.|+.+....+++.-..- ....+.. -.+.+...+..|+.+-+ +.+.+.|..++.. ...+.+...
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~~-g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANV--NFQEEEG-GWTPLHNAVQMSREDIV----ELLLRHGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTT-CCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCc--ccccCCC-CCcHHHHHHHcCCHHHH----HHHHHcCCCCcccCCCCCCHHHHH
Confidence 4455556777776555555432110 0111111 12344555566776544 3344445433211 011223333
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHH------------HHHH
Q 005905 237 SQTGDWEFACSVYDDMTKKGVIPDEV---FLSALIDFAGHAGKVEAAFEILQEAKNQGISVGII------------SYSS 301 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~------------~~~~ 301 (670)
+..|+.+ +++.+.+.|..++.. -.+ .+...+..|..+ +++.+.+.|..++.. ...+
T Consensus 80 ~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t 150 (285)
T 1wdy_A 80 AIAGSVK----LLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150 (285)
T ss_dssp HHHTCHH----HHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC
T ss_pred HHcCCHH----HHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCc
Confidence 4556654 344444555544321 112 233344556644 344444555433311 0112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 005905 302 LMGACSNAKNWQKALELYEHMKSIKLKP---TVSTMNALITALCDGDQLPKTMEVLSDMKSLGLCPNT 366 (670)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 366 (670)
.+...+..|+.+-+..+++.. |..+ |..-.+.+.. .+..+......++++.+.+.|..++.
T Consensus 151 ~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~ 214 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNV 214 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCC
Confidence 344445566666555444321 2222 1222222322 33455555556666666676665543
No 293
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=23.56 E-value=8.2e+02 Score=27.50 Aligned_cols=92 Identities=8% Similarity=0.051 Sum_probs=49.1
Q ss_pred HHHHHHHHhcCC---HHHHHHHHHHHhhCC--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 005905 158 NALITACGQSGA---VDRAFDVLAEMNAEV--HPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIA 232 (670)
Q Consensus 158 ~~li~~~~~~g~---~~~A~~l~~~m~~~~--~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 232 (670)
..++...|..|. .++|.+.|+...... ..+.||... .+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 345566666665 457777887765531 235566432 23333345566555555555555432 23334556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 005905 233 INCCSQTGDWEFACSVYDDMTK 254 (670)
Q Consensus 233 i~~~~~~g~~~~A~~l~~~m~~ 254 (670)
+.+++...+.....++++....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTC
T ss_pred HHHhCCCCCHHHHHHHHHHHhC
Confidence 6666666666655555555443
No 294
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.39 E-value=3e+02 Score=22.33 Aligned_cols=69 Identities=13% Similarity=0.217 Sum_probs=42.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHH
Q 005905 334 MNALITALCDGDQLPKTMEVLSDMKSLGLCPNTITYSILLVACERKDD--VEVGLMLLSQAKEDGVIPNLVM 403 (670)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~g~~p~~~~ 403 (670)
.+.++.-|...|+.++|.+.++++....+ -..+....+..++-+.+. .+...+++..+.+.|+-+....
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 45677777778888888888887752111 123444555556655432 3567777777777776554443
No 295
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=23.37 E-value=3.4e+02 Score=22.92 Aligned_cols=50 Identities=12% Similarity=0.205 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 005905 210 AREVYKMIHKYNIKGT-PEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIP 259 (670)
Q Consensus 210 A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 259 (670)
+.++|..|...++-.. ...|......+...|++.+|.++|..-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555554443221 2334444444555555555555555555554444
No 296
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=23.33 E-value=1e+02 Score=27.62 Aligned_cols=85 Identities=5% Similarity=-0.058 Sum_probs=40.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHH
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHI--TIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEV--YTIAINCC 236 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~--t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~ 236 (670)
+...+..|+.+.+..+++.+...+ ..++.. .-.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGG--RELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHH
Confidence 444566788877777777554432 222211 111234455567776543 44444554432211 11223334
Q ss_pred HhcCCHHHHHHHHHH
Q 005905 237 SQTGDWEFACSVYDD 251 (670)
Q Consensus 237 ~~~g~~~~A~~l~~~ 251 (670)
+..|+.+-+..+++.
T Consensus 87 ~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 87 CEHRSPTCLRALLDS 101 (241)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHc
Confidence 456666554444443
No 297
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=22.71 E-value=2.5e+02 Score=27.02 Aligned_cols=220 Identities=8% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005905 158 NALITACGQSGAVDRAFDVLAEMNAEVHPVDPDHITIGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVYTIAINCCS 237 (670)
Q Consensus 158 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 237 (670)
..+|.-|...|+.++|...++++... ...|..+....-...=.+...-+.+-.++..+.. ++-+.......+...+.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p--~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~ 83 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLG--EMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLK 83 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG--GGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCc--chHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH
Q ss_pred hcCC--------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCcc--------------
Q 005905 238 QTGD--------WEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVG-------------- 295 (670)
Q Consensus 238 ~~g~--------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~-------------- 295 (670)
...| ++..-.++......++-|-.......-..-...|. ++...-+.+........
T Consensus 84 ~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~--~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~ 161 (307)
T 2zu6_B 84 DLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQAR--AALDKATVLLSMSKGGKRKDSVWGSGGGQQS 161 (307)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHH--HHHHHHHHHHHTCC----CCCSSCCCSTTSC
T ss_pred hhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHH--HHHHHHHHHhcccccHhHHhhhcCCCCCCCC
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh--hHHHHHHHHHHhCCCCCCHHHH
Q 005905 296 ----IISYSSLMGACSNAKNWQKALELYEHMKSIKLKPTVSTMNALITALCDGDQL--PKTMEVLSDMKSLGLCPNTITY 369 (670)
Q Consensus 296 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~ 369 (670)
....+.++.-|...|+.++|.+.++++..-.+. ......++..++-+.++. +....++..+...|+-+.....
T Consensus 162 ~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 162 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_pred HHHHHHHHhcCCHH
Q 005905 370 SILLVACERKDDVE 383 (670)
Q Consensus 370 ~~ll~a~~~~g~~~ 383 (670)
..+...+....++.
T Consensus 241 ~Gf~~vl~~l~Dl~ 254 (307)
T 2zu6_B 241 RGYERIYNEIPDIN 254 (307)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHhh
No 298
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.61 E-value=2.5e+02 Score=23.43 Aligned_cols=60 Identities=10% Similarity=0.104 Sum_probs=33.4
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005905 216 MIHKYNIKGTPEVYTIAINCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276 (670)
Q Consensus 216 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 276 (670)
.+.+.|++.+ .--..++..+...+..-.|.++++.+.+.+...+..|....++.+...|-
T Consensus 17 ~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3445555443 23344555555555566677777777666655566665555555555554
No 299
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.63 E-value=2.5e+02 Score=22.94 Aligned_cols=59 Identities=15% Similarity=0.058 Sum_probs=30.8
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005905 217 IHKYNIKGTPEVYTIAINCCSQTG-DWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGK 276 (670)
Q Consensus 217 m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 276 (670)
+.+.|++.+. .-..++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4445555443 2333444444444 455666666666666555555555555555554443
No 300
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=20.59 E-value=7.9e+02 Score=26.17 Aligned_cols=278 Identities=12% Similarity=0.068 Sum_probs=146.5
Q ss_pred hhhHHHHHHHHhc-C--CHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHhhhhhHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 005905 26 SEQLHSYNRLIRQ-G--RISECIDLLEDMERKGLLDMDKVYHARFFNVCKSQKAIKEAFRFFKLVPNPTLSTFNMLMSVC 102 (670)
Q Consensus 26 ~~~~~~~~~l~~~-g--~~~~A~~l~~~m~~~g~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~y~~li~~~ 102 (670)
.+++ .|..|... + ...+....++ +..-.|....+.........+.+++...+.++.. ++.+...--....+.
T Consensus 38 ~~yl-~y~~l~~~l~~~~~~ev~~Fl~---~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~ 112 (618)
T 1qsa_A 38 YPYL-EYRQITDDLMNQPAVTVTNFVR---ANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAK 112 (618)
T ss_dssp HHHH-HHHHHHHTGGGCCHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHH
T ss_pred HHHH-HHHHHHhCcccCCHHHHHHHHH---HCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHH
Confidence 5555 66665532 2 3333333332 2222244445555555556667778887877666 444555444566777
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---------HHh------------cCCCCHH-HHHHH
Q 005905 103 ASSKDSEGAFQVLRLVQEAGLKADCKLYTTLITTCAKSGKVDA---------MFE------------NVKPDRV-VFNAL 160 (670)
Q Consensus 103 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~---------~~~------------~~~~~~~-~~~~l 160 (670)
...|+..+|......+=..|- .....+..|+..+.+.|.+.. +++ .+.++.. ....+
T Consensus 113 ~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~ 191 (618)
T 1qsa_A 113 WNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAI 191 (618)
T ss_dssp HHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHH
T ss_pred HHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHH
Confidence 778888777777777666652 344566777777776665321 111 1112211 11222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHH
Q 005905 161 ITACGQSGAVDRAFDVLAEMNAEVHPVDPDHIT---IGALMKACANAGQVDRAREVYKMIHKYNIKGTPEVY----TIAI 233 (670)
Q Consensus 161 i~~~~~~g~~~~A~~l~~~m~~~~~~~~pd~~t---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----~~li 233 (670)
+..+.+- ..+...... +.++... +...+.-+.+. +.+.|...+....+.. ..+.... ..+.
T Consensus 192 ~al~~~p---~~~~~~~~~-------~~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia 259 (618)
T 1qsa_A 192 ISLANNP---NTVLTFART-------TGATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQ-QLNEDQIQELRDIVA 259 (618)
T ss_dssp HHHHHCG---GGHHHHHHH-------SCCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred HHHHhCh---HhHHHHHhc-------cCCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHH
Confidence 2222111 111111111 1222221 11122333333 7788888888776543 2333332 2333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCccHHHHHHHHHHHHhcCCHH
Q 005905 234 NCCSQTGDWEFACSVYDDMTKKGVIPDEVFLSALIDFAGHAGKVEAAFEILQEAKNQGISVGIISYSSLMGACSNAKNWQ 313 (670)
Q Consensus 234 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~i~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 313 (670)
..+...+...++...+....... .+.....-.+....+.|+++.|...|..|..... ......--+..++...|+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~ 336 (618)
T 1qsa_A 260 WRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREA 336 (618)
T ss_dssp HTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHH
Confidence 33334453456666666655433 3443344444555677899999988888765322 22333446677788889999
Q ss_pred HHHHHHHHHHh
Q 005905 314 KALELYEHMKS 324 (670)
Q Consensus 314 ~A~~~~~~m~~ 324 (670)
+|..+|..+..
T Consensus 337 ~a~~~~~~~a~ 347 (618)
T 1qsa_A 337 EAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999988863
No 301
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.35 E-value=2.6e+02 Score=21.53 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHH-HHHHHHH-HHHCCCCCCHHHHHHH
Q 005905 348 PKTMEVLSDMKSLGLCPNTITYSILLVACERKDD-VEV-GLMLLSQ-AKEDGVIPNLVMFKCI 407 (670)
Q Consensus 348 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~-a~~~~~~-m~~~g~~p~~~~~~~l 407 (670)
-.|.++.+++...|+.|+..+..-++.-|..-+. .++ +.+++.- ....|..|+....+.+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 3466777777778888888888888777765554 111 1121111 1245778887766555
Done!