Query 005906
Match_columns 670
No_of_seqs 331 out of 1614
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 15:30:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1244 Predicted transcriptio 99.1 2.3E-11 5.1E-16 124.4 1.2 92 360-466 223-330 (336)
2 KOG1512 PHD Zn-finger protein 99.0 8.1E-11 1.8E-15 121.1 1.3 92 359-466 256-362 (381)
3 KOG0956 PHD finger protein AF1 98.5 5.8E-08 1.3E-12 109.7 3.5 112 362-474 6-187 (900)
4 KOG4443 Putative transcription 98.5 4.8E-08 1E-12 110.4 1.8 90 359-462 16-114 (694)
5 KOG4299 PHD Zn-finger protein 98.3 5.6E-07 1.2E-11 101.8 3.8 44 361-404 47-93 (613)
6 COG5141 PHD zinc finger-contai 98.2 4.7E-07 1E-11 99.3 2.1 55 357-411 189-256 (669)
7 KOG4299 PHD Zn-finger protein 98.1 9.1E-07 2E-11 100.1 1.2 46 361-406 253-305 (613)
8 KOG1973 Chromatin remodeling p 98.0 2.2E-06 4.9E-11 90.4 1.5 46 360-405 218-267 (274)
9 COG5034 TNG2 Chromatin remodel 97.9 6.9E-06 1.5E-10 84.4 2.9 44 360-404 220-268 (271)
10 PF00628 PHD: PHD-finger; Int 97.9 4.5E-06 9.8E-11 65.6 0.9 42 363-404 1-49 (51)
11 smart00249 PHD PHD zinc finger 97.8 1.3E-05 2.7E-10 60.6 2.9 41 363-403 1-47 (47)
12 KOG0954 PHD finger protein [Ge 97.8 6.8E-06 1.5E-10 94.1 1.9 54 357-410 267-331 (893)
13 KOG0955 PHD finger protein BR1 97.8 9.5E-06 2.1E-10 97.8 2.9 48 357-404 215-267 (1051)
14 KOG1512 PHD Zn-finger protein 97.8 5.6E-06 1.2E-10 86.0 0.8 40 362-401 315-357 (381)
15 KOG4443 Putative transcription 97.7 5.1E-06 1.1E-10 94.4 -1.3 111 363-474 70-216 (694)
16 KOG1244 Predicted transcriptio 97.7 1.2E-05 2.7E-10 83.1 1.1 41 363-403 283-328 (336)
17 PF00628 PHD: PHD-finger; Int 97.7 9.6E-06 2.1E-10 63.7 -0.2 48 405-465 2-49 (51)
18 KOG0383 Predicted helicase [Ge 97.6 2.8E-05 6E-10 90.7 3.0 69 378-464 1-91 (696)
19 smart00249 PHD PHD zinc finger 97.5 7E-05 1.5E-09 56.4 2.8 45 405-462 2-46 (47)
20 KOG1473 Nucleosome remodeling 97.5 2.8E-05 6E-10 92.5 0.4 115 358-475 341-487 (1414)
21 KOG4323 Polycomb-like PHD Zn-f 97.5 5.2E-05 1.1E-09 84.5 2.4 103 363-474 85-231 (464)
22 PF13673 Acetyltransf_10: Acet 97.4 0.00029 6.3E-09 62.6 6.3 61 562-624 44-117 (117)
23 KOG0383 Predicted helicase [Ge 97.4 6.1E-05 1.3E-09 87.9 1.6 50 357-406 43-94 (696)
24 PF15446 zf-PHD-like: PHD/FYVE 97.3 0.00018 3.8E-09 70.3 3.6 84 363-446 1-143 (175)
25 KOG0825 PHD Zn-finger protein 97.3 0.00011 2.4E-09 84.9 2.2 51 401-466 214-265 (1134)
26 PF13508 Acetyltransf_7: Acety 97.2 0.00074 1.6E-08 56.9 5.9 60 563-626 4-79 (79)
27 KOG0825 PHD Zn-finger protein 97.1 0.00033 7.1E-09 81.1 3.0 46 359-404 213-264 (1134)
28 PF00583 Acetyltransf_1: Acety 97.0 0.0016 3.4E-08 54.4 5.6 47 578-625 34-83 (83)
29 PTZ00330 acetyltransferase; Pr 97.0 0.00099 2.1E-08 61.7 4.8 52 578-630 91-142 (147)
30 PRK10314 putative acyltransfer 96.9 0.0025 5.5E-08 61.3 7.3 51 578-629 83-134 (153)
31 PRK03624 putative acetyltransf 96.7 0.0027 5.8E-08 57.4 5.6 64 564-628 47-129 (140)
32 TIGR01575 rimI ribosomal-prote 96.7 0.0069 1.5E-07 54.2 8.2 64 565-629 34-116 (131)
33 KOG1973 Chromatin remodeling p 96.6 0.00088 1.9E-08 70.9 1.6 34 426-466 231-267 (274)
34 PF13527 Acetyltransf_9: Acety 96.6 0.01 2.2E-07 53.8 8.2 93 520-627 11-127 (127)
35 TIGR00124 cit_ly_ligase [citra 96.4 0.0069 1.5E-07 65.9 6.9 73 558-631 27-111 (332)
36 PLN02706 glucosamine 6-phospha 96.3 0.0088 1.9E-07 56.0 6.5 49 578-627 94-142 (150)
37 cd02169 Citrate_lyase_ligase C 96.3 0.0082 1.8E-07 64.4 6.7 50 578-628 34-83 (297)
38 cd04718 BAH_plant_2 BAH, or Br 95.9 0.0054 1.2E-07 59.3 2.7 30 382-411 1-32 (148)
39 PHA00673 acetyltransferase dom 95.8 0.019 4.1E-07 56.1 6.0 61 564-625 57-142 (154)
40 PRK10146 aminoalkylphosphonic 95.7 0.027 5.9E-07 51.9 6.6 49 578-627 85-136 (144)
41 smart00258 SAND SAND domain. 95.7 0.0067 1.5E-07 52.0 2.2 44 292-336 22-68 (73)
42 COG1246 ArgA N-acetylglutamate 95.6 0.01 2.2E-07 57.7 3.3 71 560-632 55-126 (153)
43 PLN02825 amino-acid N-acetyltr 95.5 0.02 4.3E-07 65.7 6.1 65 565-631 410-492 (515)
44 cd04718 BAH_plant_2 BAH, or Br 95.4 0.0076 1.6E-07 58.3 1.8 26 436-466 1-26 (148)
45 TIGR03827 GNAT_ablB putative b 95.4 0.062 1.4E-06 56.2 8.8 64 563-627 159-243 (266)
46 PRK10975 TDP-fucosamine acetyl 95.4 0.081 1.7E-06 52.3 9.2 66 561-627 101-186 (194)
47 KOG0957 PHD finger protein [Ge 95.3 0.0079 1.7E-07 67.2 1.8 57 404-475 546-608 (707)
48 PRK09491 rimI ribosomal-protei 95.3 0.043 9.4E-07 51.1 6.5 51 578-629 72-125 (146)
49 PF13831 PHD_2: PHD-finger; PD 95.3 0.0024 5.2E-08 47.5 -1.6 33 371-403 2-35 (36)
50 COG5034 TNG2 Chromatin remodel 95.2 0.0086 1.9E-07 62.1 1.6 34 426-466 233-269 (271)
51 TIGR02382 wecD_rffC TDP-D-fuco 95.2 0.11 2.4E-06 51.2 9.3 61 566-627 103-183 (191)
52 PF13420 Acetyltransf_4: Acety 95.0 0.071 1.5E-06 49.8 7.1 67 560-628 50-138 (155)
53 KOG1245 Chromatin remodeling c 94.6 0.0083 1.8E-07 75.6 -0.6 46 359-404 1106-1156(1404)
54 KOG4323 Polycomb-like PHD Zn-f 94.5 0.011 2.4E-07 66.3 0.2 43 363-405 170-223 (464)
55 TIGR01890 N-Ac-Glu-synth amino 94.5 0.07 1.5E-06 59.8 6.6 63 566-630 326-406 (429)
56 PRK09831 putative acyltransfer 94.5 0.077 1.7E-06 49.9 5.9 61 565-631 56-128 (147)
57 KOG1245 Chromatin remodeling c 94.4 0.011 2.4E-07 74.5 -0.1 50 405-469 1111-1160(1404)
58 PRK05279 N-acetylglutamate syn 94.3 0.09 1.9E-06 59.1 6.8 64 566-631 338-419 (441)
59 PRK07757 acetyltransferase; Pr 93.7 0.14 3E-06 48.0 6.0 51 578-631 74-124 (152)
60 PF01342 SAND: SAND domain; I 93.6 0.016 3.5E-07 50.8 -0.5 37 299-336 41-77 (82)
61 cd04301 NAT_SF N-Acyltransfera 93.6 0.14 3.1E-06 38.6 4.9 31 578-608 34-64 (65)
62 PRK07922 N-acetylglutamate syn 93.5 0.16 3.5E-06 49.6 6.1 50 578-630 79-128 (169)
63 KOG0957 PHD finger protein [Ge 93.4 0.041 8.8E-07 61.7 1.9 43 362-404 120-177 (707)
64 COG2153 ElaA Predicted acyltra 93.3 0.14 3E-06 49.6 5.2 52 578-630 85-137 (155)
65 PRK10140 putative acetyltransf 92.5 0.29 6.2E-06 45.8 6.1 53 578-631 87-143 (162)
66 KOG0955 PHD finger protein BR1 92.4 0.066 1.4E-06 65.7 2.0 47 404-465 221-267 (1051)
67 TIGR02406 ectoine_EctA L-2,4-d 92.1 0.3 6.5E-06 46.9 5.8 49 578-627 75-126 (157)
68 TIGR03103 trio_acet_GNAT GNAT- 92.0 0.29 6.4E-06 56.8 6.7 51 578-629 164-217 (547)
69 PF13523 Acetyltransf_8: Acety 92.0 0.4 8.7E-06 44.9 6.4 71 559-629 45-141 (152)
70 PHA01807 hypothetical protein 91.9 0.33 7.1E-06 47.3 5.8 37 578-614 90-126 (153)
71 TIGR03448 mycothiol_MshD mycot 91.8 0.64 1.4E-05 48.5 8.4 64 564-629 48-128 (292)
72 PRK12308 bifunctional arginino 91.7 0.26 5.7E-06 57.9 5.9 64 565-631 506-586 (614)
73 TIGR03448 mycothiol_MshD mycot 91.7 0.32 6.9E-06 50.8 5.9 51 578-629 235-288 (292)
74 PRK10562 putative acetyltransf 91.6 0.28 6.2E-06 45.7 5.0 49 578-629 77-125 (145)
75 COG0456 RimI Acetyltransferase 91.2 1 2.3E-05 42.7 8.5 62 570-631 91-156 (177)
76 COG5141 PHD zinc finger-contai 90.8 0.095 2.1E-06 58.8 1.0 45 404-462 195-239 (669)
77 KOG3396 Glucosamine-phosphate 90.4 0.62 1.3E-05 44.8 5.9 66 562-628 53-143 (150)
78 PRK10514 putative acetyltransf 90.1 0.65 1.4E-05 42.9 5.8 62 567-631 55-128 (145)
79 COG1247 Sortase and related ac 90.0 0.81 1.8E-05 45.5 6.7 95 558-655 48-166 (169)
80 PRK15130 spermidine N1-acetylt 89.9 0.71 1.5E-05 44.8 6.2 63 566-629 61-145 (186)
81 PRK01346 hypothetical protein; 89.2 0.76 1.7E-05 50.8 6.5 52 578-632 88-139 (411)
82 PF07227 DUF1423: Protein of u 89.1 0.34 7.3E-06 54.4 3.6 42 398-446 124-165 (446)
83 KOG0954 PHD finger protein [Ge 88.6 0.18 3.8E-06 59.2 1.0 47 404-465 273-319 (893)
84 PRK10809 ribosomal-protein-S5- 87.7 1.1 2.4E-05 43.9 5.9 51 578-628 112-165 (194)
85 KOG3139 N-acetyltransferase [G 87.4 1.1 2.4E-05 44.2 5.5 52 578-630 93-147 (165)
86 TIGR01211 ELP3 histone acetylt 87.3 0.65 1.4E-05 53.7 4.5 50 579-629 467-516 (522)
87 TIGR01686 FkbH FkbH-like domai 87.2 1.2 2.6E-05 47.9 6.3 48 578-626 266-318 (320)
88 PF13831 PHD_2: PHD-finger; PD 86.7 0.13 2.9E-06 38.2 -0.9 31 426-462 3-34 (36)
89 KOG0956 PHD finger protein AF1 86.7 0.3 6.5E-06 57.0 1.4 36 424-466 19-56 (900)
90 PF13832 zf-HC5HC2H_2: PHD-zin 85.4 0.64 1.4E-05 42.2 2.6 69 363-446 2-89 (110)
91 PF13302 Acetyltransf_3: Acety 84.9 1.8 3.9E-05 39.3 5.4 48 578-625 92-142 (142)
92 COG3393 Predicted acetyltransf 84.1 1.7 3.8E-05 45.9 5.4 63 565-628 180-261 (268)
93 KOG1081 Transcription factor N 83.3 0.9 2E-05 51.8 3.2 46 357-403 85-130 (463)
94 PRK13688 hypothetical protein; 83.0 3 6.6E-05 40.6 6.3 52 573-630 82-134 (156)
95 PRK10151 ribosomal-protein-L7/ 82.5 3.8 8.2E-05 39.5 6.8 61 569-630 74-156 (179)
96 TIGR03585 PseH pseudaminic aci 81.9 3.9 8.5E-05 38.0 6.5 64 568-632 57-141 (156)
97 PF13718 GNAT_acetyltr_2: GNAT 81.9 2.4 5.3E-05 43.1 5.3 88 536-633 65-180 (196)
98 KOG3216 Diamine acetyltransfer 81.3 6.2 0.00013 38.8 7.5 102 517-628 18-145 (163)
99 COG3153 Predicted acetyltransf 79.0 13 0.00029 37.1 9.3 69 578-655 84-152 (171)
100 PF14446 Prok-RING_1: Prokaryo 76.7 1.5 3.2E-05 35.8 1.5 36 402-446 5-40 (54)
101 PF06852 DUF1248: Protein of u 76.4 4 8.8E-05 41.1 4.9 67 562-629 47-137 (181)
102 PF08445 FR47: FR47-like prote 76.2 5.6 0.00012 34.7 5.2 58 571-629 22-82 (86)
103 KOG3397 Acetyltransferases [Ge 75.4 2.9 6.2E-05 41.9 3.4 52 578-631 92-143 (225)
104 PF01429 MBD: Methyl-CpG bindi 74.0 3 6.5E-05 35.9 2.9 40 129-169 11-55 (77)
105 KOG1701 Focal adhesion adaptor 72.4 0.87 1.9E-05 50.8 -1.0 61 378-445 351-431 (468)
106 PF14446 Prok-RING_1: Prokaryo 67.6 2.8 6.1E-05 34.2 1.2 28 362-389 6-37 (54)
107 cd01396 MeCP2_MBD MeCP2, MBD1, 64.9 7.9 0.00017 33.7 3.5 40 129-169 7-50 (77)
108 KOG1473 Nucleosome remodeling 63.8 1.4 3.1E-05 54.1 -1.7 48 357-404 424-477 (1414)
109 COG0454 WecD Histone acetyltra 62.6 7.1 0.00015 31.2 2.8 41 578-624 90-130 (156)
110 PF12568 DUF3749: Acetyltransf 62.1 13 0.00028 35.5 4.7 66 559-628 37-124 (128)
111 PF13901 DUF4206: Domain of un 60.0 5.4 0.00012 40.6 1.9 32 423-468 168-199 (202)
112 PF07897 DUF1675: Protein of u 56.3 4.2 9.2E-05 43.6 0.4 30 293-322 253-283 (284)
113 PF15446 zf-PHD-like: PHD/FYVE 55.9 5.9 0.00013 39.4 1.3 24 423-446 13-36 (175)
114 PF13832 zf-HC5HC2H_2: PHD-zin 54.9 5.8 0.00013 35.9 1.0 29 361-389 55-86 (110)
115 cd00122 MBD MeCP2, MBD1, MBD2, 52.6 20 0.00044 29.6 3.8 39 130-169 7-49 (62)
116 smart00391 MBD Methyl-CpG bind 52.3 18 0.00038 31.5 3.5 40 129-169 8-52 (77)
117 KOG3234 Acetyltransferase, (GN 52.1 20 0.00043 35.6 4.2 54 572-626 71-128 (173)
118 PF10497 zf-4CXXC_R1: Zinc-fin 52.0 6.4 0.00014 36.2 0.8 34 378-411 35-79 (105)
119 PF13771 zf-HC5HC2H: PHD-like 51.4 8.9 0.00019 33.3 1.6 27 363-389 38-67 (90)
120 COG1444 Predicted P-loop ATPas 51.0 22 0.00047 43.1 5.2 95 537-642 507-606 (758)
121 PF13771 zf-HC5HC2H: PHD-like 49.1 7.3 0.00016 33.8 0.7 38 426-463 48-89 (90)
122 KOG4144 Arylalkylamine N-acety 47.7 14 0.0003 36.6 2.4 56 573-629 104-161 (190)
123 KOG2752 Uncharacterized conser 47.4 13 0.00028 40.4 2.3 24 423-446 144-168 (345)
124 PF12861 zf-Apc11: Anaphase-pr 47.2 8 0.00017 34.4 0.7 31 373-405 47-79 (85)
125 KOG1829 Uncharacterized conser 45.6 8.3 0.00018 45.2 0.7 35 424-470 528-562 (580)
126 PF11793 FANCL_C: FANCL C-term 44.7 7.5 0.00016 33.0 0.1 28 362-389 3-38 (70)
127 KOG3235 Subunit of the major N 44.4 33 0.00072 34.2 4.4 61 570-630 71-136 (193)
128 PF12746 GNAT_acetyltran: GNAT 43.2 29 0.00064 37.0 4.2 26 568-593 171-212 (265)
129 PF13639 zf-RING_2: Ring finge 42.4 4.1 8.8E-05 30.9 -1.7 27 362-389 1-31 (44)
130 PF07927 YcfA: YcfA-like prote 41.9 34 0.00075 27.0 3.5 29 33-62 3-31 (56)
131 PRK03564 formate dehydrogenase 40.8 34 0.00075 37.3 4.4 26 359-384 185-223 (309)
132 KOG1701 Focal adhesion adaptor 40.7 4.6 0.0001 45.3 -2.3 70 362-444 275-363 (468)
133 COG1670 RimL Acetyltransferase 40.6 66 0.0014 30.0 5.9 56 578-633 104-162 (187)
134 KOG1246 DNA-binding protein ju 40.1 22 0.00048 44.0 3.1 49 360-408 154-206 (904)
135 PF01429 MBD: Methyl-CpG bindi 38.2 31 0.00068 29.7 2.9 37 40-76 12-55 (77)
136 KOG1632 Uncharacterized PHD Zn 37.9 18 0.0004 39.9 1.8 45 426-474 74-120 (345)
137 PF13913 zf-C2HC_2: zinc-finge 36.7 14 0.00029 25.3 0.3 20 293-312 3-22 (25)
138 PF11793 FANCL_C: FANCL C-term 36.0 20 0.00043 30.4 1.3 35 404-445 4-40 (70)
139 PF08444 Gly_acyl_tr_C: Aralky 35.7 40 0.00086 30.3 3.2 27 578-604 28-54 (89)
140 PF13901 DUF4206: Domain of un 35.0 29 0.00062 35.4 2.5 28 362-389 153-188 (202)
141 PF07649 C1_3: C1-like domain; 33.0 18 0.00038 25.5 0.5 27 405-441 3-29 (30)
142 PF00641 zf-RanBP: Zn-finger i 32.7 17 0.00036 25.6 0.3 10 395-404 2-11 (30)
143 cd01396 MeCP2_MBD MeCP2, MBD1, 32.2 54 0.0012 28.5 3.4 36 41-76 9-50 (77)
144 COG3053 CitC Citrate lyase syn 31.6 88 0.0019 34.2 5.5 69 562-631 37-117 (352)
145 smart00547 ZnF_RBZ Zinc finger 30.7 32 0.00068 23.2 1.4 9 396-404 1-9 (26)
146 KOG3138 Predicted N-acetyltran 27.5 58 0.0012 33.1 3.2 52 578-629 98-152 (187)
147 KOG4628 Predicted E3 ubiquitin 26.9 50 0.0011 36.6 2.9 43 362-407 230-277 (348)
148 PF04216 FdhE: Protein involve 26.9 32 0.00069 36.8 1.3 26 359-384 170-208 (290)
149 COG5628 Predicted acetyltransf 26.6 2.2E+02 0.0047 27.4 6.5 65 578-643 74-141 (143)
150 KOG3612 PHD Zn-finger protein 25.9 66 0.0014 37.5 3.6 47 358-404 57-106 (588)
151 KOG2488 Acetyltransferase (GNA 25.7 76 0.0016 32.5 3.6 51 578-629 129-182 (202)
152 PF10497 zf-4CXXC_R1: Zinc-fin 25.5 25 0.00054 32.3 0.2 37 430-467 33-70 (105)
153 TIGR01562 FdhE formate dehydro 24.9 90 0.002 34.1 4.3 26 359-384 182-221 (305)
154 COG1243 ELP3 Histone acetyltra 23.8 71 0.0015 36.8 3.3 49 579-628 460-508 (515)
155 KOG0804 Cytoplasmic Zn-finger 23.7 35 0.00076 38.8 1.0 29 361-389 175-207 (493)
156 PF05502 Dynactin_p62: Dynacti 23.2 57 0.0012 37.7 2.5 9 466-474 108-116 (483)
157 KOG1169 Diacylglycerol kinase 23.1 38 0.00083 40.2 1.2 78 361-445 116-212 (634)
158 PF15431 TMEM190: Transmembran 22.4 43 0.00094 31.3 1.1 20 23-45 49-68 (134)
159 KOG3581 Creatine kinases [Ener 22.1 43 0.00094 36.3 1.2 73 485-565 50-126 (363)
160 PF00356 LacI: Bacterial regul 21.9 1.7E+02 0.0038 22.9 4.3 36 9-44 9-44 (46)
161 KOG0269 WD40 repeat-containing 21.6 47 0.001 40.1 1.4 39 396-445 767-811 (839)
162 PRK14559 putative protein seri 21.1 67 0.0015 38.5 2.6 43 373-436 1-50 (645)
163 PF14542 Acetyltransf_CG: GCN5 20.7 1.6E+02 0.0035 25.3 4.2 32 578-611 31-62 (78)
164 PF12861 zf-Apc11: Anaphase-pr 20.2 43 0.00093 29.9 0.6 31 430-466 49-79 (85)
No 1
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.09 E-value=2.3e-11 Score=124.36 Aligned_cols=92 Identities=33% Similarity=0.793 Sum_probs=76.5
Q ss_pred CccccccccC----------CCceEEecCCCCccCcCCCCC-----CCCCCCCCCCCCC-cccccCCCCCCccccccccc
Q 005906 360 NDEICSICQY----------GGELVLCDDCPSSFHKSCLVL-----NDLPKGNWFCPSC-CCRICGIGKRKFEEKTEHSV 423 (670)
Q Consensus 360 ndd~C~vC~d----------gG~Ll~Cd~Cp~afH~~Cl~l-----~~~p~g~W~C~~C-~C~iCg~~~~~~~~~~~~~~ 423 (670)
...+|..|-+ +.+|+.|..|.++=|++||.. ..+....|.|..| .|.+||-. .+
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgts----------en 292 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTS----------EN 292 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCc----------CC
Confidence 3457888864 356999999999999999983 3567789999999 58999877 34
Q ss_pred cccccccCccccccccccccccccccccCCCCCCcccCCcchh
Q 005906 424 DDVLRICGQCEHNFHVGCIEKSRAINLNNCSQNKWFCSDGCEV 466 (670)
Q Consensus 424 ~~~ll~CdqCer~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~~ 466 (670)
|+.+++||.|+|.||..||.| ++.+.|+|.|.|-- |-+
T Consensus 293 ddqllfcddcdrgyhmyclsp----pm~eppegswsc~K-OG~ 330 (336)
T KOG1244|consen 293 DDQLLFCDDCDRGYHMYCLSP----PMVEPPEGSWSCHL-CLE 330 (336)
T ss_pred CceeEeecccCCceeeEecCC----CcCCCCCCchhHHH-HHH
Confidence 567999999999999999998 58999999999875 543
No 2
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.01 E-value=8.1e-11 Score=121.07 Aligned_cols=92 Identities=23% Similarity=0.567 Sum_probs=75.1
Q ss_pred CCccccccccCC---------CceEEecCCCCccCcCCCCCC-----CCCCCCCCCCCC-cccccCCCCCCccccccccc
Q 005906 359 QNDEICSICQYG---------GELVLCDDCPSSFHKSCLVLN-----DLPKGNWFCPSC-CCRICGIGKRKFEEKTEHSV 423 (670)
Q Consensus 359 ~ndd~C~vC~dg---------G~Ll~Cd~Cp~afH~~Cl~l~-----~~p~g~W~C~~C-~C~iCg~~~~~~~~~~~~~~ 423 (670)
.....|.+|-++ ..+++|..|..++|+.|+.+. .+....|.|..| .|.||+++ . .
T Consensus 256 ~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P--~--------~ 325 (381)
T KOG1512|consen 256 QRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGP--V--------I 325 (381)
T ss_pred cchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCc--c--------c
Confidence 334579999875 339999999999999999943 445678999999 69999999 2 2
Q ss_pred cccccccCccccccccccccccccccccCCCCCCcccCCcchh
Q 005906 424 DDVLRICGQCEHNFHVGCIEKSRAINLNNCSQNKWFCSDGCEV 466 (670)
Q Consensus 424 ~~~ll~CdqCer~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~~ 466 (670)
++.+++||.|+|.||..|.. |..+|.|.|.|-..|..
T Consensus 326 E~E~~FCD~CDRG~HT~CVG------L~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 326 ESEHLFCDVCDRGPHTLCVG------LQDLPRGEWICDMRCRE 362 (381)
T ss_pred chheeccccccCCCCccccc------cccccCccchhhhHHHH
Confidence 33499999999999999974 67799999999876653
No 3
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=98.50 E-value=5.8e-08 Score=109.70 Aligned_cols=112 Identities=28% Similarity=0.711 Sum_probs=74.9
Q ss_pred cccccccCC-C----ceEEecC--CCCccCcCCCCCCCCCCCCCCCCCCc---------ccccCCCCCCcccc-------
Q 005906 362 EICSICQYG-G----ELVLCDD--CPSSFHKSCLVLNDLPKGNWFCPSCC---------CRICGIGKRKFEEK------- 418 (670)
Q Consensus 362 d~C~vC~dg-G----~Ll~Cd~--Cp~afH~~Cl~l~~~p~g~W~C~~C~---------C~iCg~~~~~~~~~------- 418 (670)
.-|.||.|. | -|+.||+ |.-+.|..|.++.++|.|.|||..|. |.+|--.-+.+..+
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAH 85 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAH 85 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceE
Confidence 359999984 3 3999994 99999999999999999999999994 55552110000000
Q ss_pred ---------------------------------------cc----ccccccccccC--ccccccccccccccccccccC-
Q 005906 419 ---------------------------------------TE----HSVDDVLRICG--QCEHNFHVGCIEKSRAINLNN- 452 (670)
Q Consensus 419 ---------------------------------------~~----~~~~~~ll~Cd--qCer~YH~~Cl~~~~~~~l~~- 452 (670)
++ ...-+..+.|+ .|.++||+.|.+..+..--++
T Consensus 86 VVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~g 165 (900)
T KOG0956|consen 86 VVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEG 165 (900)
T ss_pred EEEEeeccceeecccccccceeeccCchhhhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccc
Confidence 00 01123456665 477899999998766432222
Q ss_pred -CCCCCcccCCcchhhhHHHHhh
Q 005906 453 -CSQNKWFCSDGCEVISSCLHEI 474 (670)
Q Consensus 453 -~p~~~WfC~~~C~~I~~~Lq~l 474 (670)
+...-=||+= |+..|..|.+-
T Consensus 166 n~~dNVKYCGY-Ck~HfsKlkk~ 187 (900)
T KOG0956|consen 166 NISDNVKYCGY-CKYHFSKLKKS 187 (900)
T ss_pred cccccceechh-HHHHHHHhhcC
Confidence 2233468885 99999988875
No 4
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.47 E-value=4.8e-08 Score=110.43 Aligned_cols=90 Identities=27% Similarity=0.818 Sum_probs=73.3
Q ss_pred CCccccccccCC-----CceEEecCCCCccCcCCCCC--C-CCCCCCCCCCCC-cccccCCCCCCccccccccccccccc
Q 005906 359 QNDEICSICQYG-----GELVLCDDCPSSFHKSCLVL--N-DLPKGNWFCPSC-CCRICGIGKRKFEEKTEHSVDDVLRI 429 (670)
Q Consensus 359 ~ndd~C~vC~dg-----G~Ll~Cd~Cp~afH~~Cl~l--~-~~p~g~W~C~~C-~C~iCg~~~~~~~~~~~~~~~~~ll~ 429 (670)
.....|.+|+.. |.|+.|..|...||.+|+.+ . .+-.+-|.|+.| .|..|+.. +++..+++
T Consensus 16 ~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~----------gD~~kf~~ 85 (694)
T KOG4443|consen 16 IVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTT----------GDPKKFLL 85 (694)
T ss_pred hhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeecccc----------CCcccccc
Confidence 344578899864 45999999999999999992 2 222345999999 59999855 34566999
Q ss_pred cCccccccccccccccccccccCCCCCCcccCC
Q 005906 430 CGQCEHNFHVGCIEKSRAINLNNCSQNKWFCSD 462 (670)
Q Consensus 430 CdqCer~YH~~Cl~~~~~~~l~~~p~~~WfC~~ 462 (670)
|+.|+-.||..|..| +++.++.+.|+|++
T Consensus 86 Ck~cDvsyh~yc~~P----~~~~v~sg~~~ckk 114 (694)
T KOG4443|consen 86 CKRCDVSYHCYCQKP----PNDKVPSGPWLCKK 114 (694)
T ss_pred cccccccccccccCC----ccccccCcccccHH
Confidence 999999999999999 47899999999987
No 5
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.25 E-value=5.6e-07 Score=101.81 Aligned_cols=44 Identities=41% Similarity=0.904 Sum_probs=36.7
Q ss_pred ccccccccCCCceEEecCCCCccCcCCCCCC---CCCCCCCCCCCCc
Q 005906 361 DEICSICQYGGELVLCDDCPSSFHKSCLVLN---DLPKGNWFCPSCC 404 (670)
Q Consensus 361 dd~C~vC~dgG~Ll~Cd~Cp~afH~~Cl~l~---~~p~g~W~C~~C~ 404 (670)
...|.+|..+|+++||+.|+.+||..|.+.. ..+.+.|.|..|.
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~ 93 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCP 93 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCC
Confidence 5579999999999999999999999999843 3445678888774
No 6
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.22 E-value=4.7e-07 Score=99.34 Aligned_cols=55 Identities=35% Similarity=0.943 Sum_probs=46.8
Q ss_pred CCCCccccccccCC-----CceEEecCCCCccCcCCCCCCCCCCCCCCCCCCc--------ccccCCC
Q 005906 357 EKQNDEICSICQYG-----GELVLCDDCPSSFHKSCLVLNDLPKGNWFCPSCC--------CRICGIG 411 (670)
Q Consensus 357 ~~~ndd~C~vC~dg-----G~Ll~Cd~Cp~afH~~Cl~l~~~p~g~W~C~~C~--------C~iCg~~ 411 (670)
+++-|+.|.+|... ..++.||+|..+.|.+|.|+..+|+|.|+|..|. |.+|-..
T Consensus 189 ~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~ 256 (669)
T COG5141 189 SDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSS 256 (669)
T ss_pred chhhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCC
Confidence 44567889999853 3499999999999999999999999999999994 7777554
No 7
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.09 E-value=9.1e-07 Score=100.13 Aligned_cols=46 Identities=43% Similarity=1.239 Sum_probs=41.4
Q ss_pred ccccccccCCCce---EEecCCCCccCcCCCC----CCCCCCCCCCCCCCccc
Q 005906 361 DEICSICQYGGEL---VLCDDCPSSFHKSCLV----LNDLPKGNWFCPSCCCR 406 (670)
Q Consensus 361 dd~C~vC~dgG~L---l~Cd~Cp~afH~~Cl~----l~~~p~g~W~C~~C~C~ 406 (670)
.++|..|+..|.. +|||+||.+||+.|+. .+.+|.|.|+|+.|.|.
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 5699999998876 9999999999999999 35899999999999864
No 8
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.98 E-value=2.2e-06 Score=90.36 Aligned_cols=46 Identities=37% Similarity=0.951 Sum_probs=38.0
Q ss_pred Ccccccc-ccCCCceEEecC--CC-CccCcCCCCCCCCCCCCCCCCCCcc
Q 005906 360 NDEICSI-CQYGGELVLCDD--CP-SSFHKSCLVLNDLPKGNWFCPSCCC 405 (670)
Q Consensus 360 ndd~C~v-C~dgG~Ll~Cd~--Cp-~afH~~Cl~l~~~p~g~W~C~~C~C 405 (670)
...+|.. |...|+||-||. |+ .+||..|+||...|.|.|||+.|.-
T Consensus 218 e~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 218 EPTYCICNQVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKA 267 (274)
T ss_pred CCEEEEecccccccccccCCCCCCcceEEEeccccccCCCCcccchhhhh
Confidence 3344522 556899999997 99 7999999999999999999998753
No 9
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.88 E-value=6.9e-06 Score=84.39 Aligned_cols=44 Identities=43% Similarity=1.155 Sum_probs=37.9
Q ss_pred CccccccccCC--CceEEec--CCCC-ccCcCCCCCCCCCCCCCCCCCCc
Q 005906 360 NDEICSICQYG--GELVLCD--DCPS-SFHKSCLVLNDLPKGNWFCPSCC 404 (670)
Q Consensus 360 ndd~C~vC~dg--G~Ll~Cd--~Cp~-afH~~Cl~l~~~p~g~W~C~~C~ 404 (670)
+.-+| -|.++ |+|+-|| .|++ +||..|+||++.|.|.|||+.|.
T Consensus 220 e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk 268 (271)
T COG5034 220 EELYC-FCQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECK 268 (271)
T ss_pred ceeEE-EecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhH
Confidence 34466 57764 9999999 5999 99999999999999999999984
No 10
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.86 E-value=4.5e-06 Score=65.60 Aligned_cols=42 Identities=33% Similarity=1.195 Sum_probs=34.9
Q ss_pred ccccccC---CCceEEecCCCCccCcCCCCCC----CCCCCCCCCCCCc
Q 005906 363 ICSICQY---GGELVLCDDCPSSFHKSCLVLN----DLPKGNWFCPSCC 404 (670)
Q Consensus 363 ~C~vC~d---gG~Ll~Cd~Cp~afH~~Cl~l~----~~p~g~W~C~~C~ 404 (670)
+|.+|+. .+++|.||.|..+||..|+++. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4788886 6779999999999999999954 3445699999884
No 11
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.82 E-value=6.8e-06 Score=94.14 Aligned_cols=54 Identities=35% Similarity=1.040 Sum_probs=45.8
Q ss_pred CCCCccccccccCC-----CceEEecCCCCccCcCCCCCCCCCCCCCCCCCCc------ccccCC
Q 005906 357 EKQNDEICSICQYG-----GELVLCDDCPSSFHKSCLVLNDLPKGNWFCPSCC------CRICGI 410 (670)
Q Consensus 357 ~~~ndd~C~vC~dg-----G~Ll~Cd~Cp~afH~~Cl~l~~~p~g~W~C~~C~------C~iCg~ 410 (670)
+-+++.+|.||..+ .+|++||.|....|..|.|+..+|+|.|.|..|. |-.|-+
T Consensus 267 e~dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPk 331 (893)
T KOG0954|consen 267 EYDEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPK 331 (893)
T ss_pred eccccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccc
Confidence 34477789999854 5699999999999999999999999999999995 666643
No 13
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.81 E-value=9.5e-06 Score=97.82 Aligned_cols=48 Identities=33% Similarity=0.946 Sum_probs=42.2
Q ss_pred CCCCccccccccCC-----CceEEecCCCCccCcCCCCCCCCCCCCCCCCCCc
Q 005906 357 EKQNDEICSICQYG-----GELVLCDDCPSSFHKSCLVLNDLPKGNWFCPSCC 404 (670)
Q Consensus 357 ~~~ndd~C~vC~dg-----G~Ll~Cd~Cp~afH~~Cl~l~~~p~g~W~C~~C~ 404 (670)
..+.|.+|.||.++ ..+|.||.|..++|.+|.+.+-+|+|.|.|..|.
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl 267 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCL 267 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhc
Confidence 34567789999975 3499999999999999999999999999999994
No 14
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.80 E-value=5.6e-06 Score=86.01 Aligned_cols=40 Identities=43% Similarity=1.029 Sum_probs=36.6
Q ss_pred cccccccCC---CceEEecCCCCccCcCCCCCCCCCCCCCCCC
Q 005906 362 EICSICQYG---GELVLCDDCPSSFHKSCLVLNDLPKGNWFCP 401 (670)
Q Consensus 362 d~C~vC~dg---G~Ll~Cd~Cp~afH~~Cl~l~~~p~g~W~C~ 401 (670)
..|.||+.+ .++++||.|++.||+.|+||..+|.|.|.|.
T Consensus 315 ~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVGL~~lP~G~WICD 357 (381)
T KOG1512|consen 315 ELCRICLGPVIESEHLFCDVCDRGPHTLCVGLQDLPRGEWICD 357 (381)
T ss_pred HhhhccCCcccchheeccccccCCCCccccccccccCccchhh
Confidence 369999975 5799999999999999999999999999995
No 15
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.71 E-value=5.1e-06 Score=94.44 Aligned_cols=111 Identities=29% Similarity=0.638 Sum_probs=73.2
Q ss_pred ccccccCCC---ceEEecCCCCccCcCCCC--CCCCCCCCCCCCCC-cccccCCCCCC----ccc-cccc----------
Q 005906 363 ICSICQYGG---ELVLCDDCPSSFHKSCLV--LNDLPKGNWFCPSC-CCRICGIGKRK----FEE-KTEH---------- 421 (670)
Q Consensus 363 ~C~vC~dgG---~Ll~Cd~Cp~afH~~Cl~--l~~~p~g~W~C~~C-~C~iCg~~~~~----~~~-~~~~---------- 421 (670)
.|..|+.+| .++.|+.|..+||.+|.. .+.++.|.|+|+.| .|..|+..... +.. +...
T Consensus 70 vCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c~s~~~cP 149 (694)
T KOG4443|consen 70 VCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPCASLSYCP 149 (694)
T ss_pred eeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhccCcccccccccccCc
Confidence 588888544 599999999999999998 56899999999999 67777654211 100 0000
Q ss_pred --------cccccccccCccccccccccccccccccccCCCCCCcccCCcch-------hhhHHHHhh
Q 005906 422 --------SVDDVLRICGQCEHNFHVGCIEKSRAINLNNCSQNKWFCSDGCE-------VISSCLHEI 474 (670)
Q Consensus 422 --------~~~~~ll~CdqCer~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~-------~I~~~Lq~l 474 (670)
.+.-.++.|++|.+|-|..|........+...-.-.+-|+- |. .|...|+++
T Consensus 150 vc~~~Y~~~e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~CS~-CR~es~qvKdi~~~vqe~ 216 (694)
T KOG4443|consen 150 VCLIVYQDSESLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKCST-CRGESYQVKDISDALQET 216 (694)
T ss_pred hHHHhhhhccchhhHHHHHhcccccCCCCccchHHHHHHhhhhhcccce-eehhhhhhhhHHHHHHhh
Confidence 11223589999999999999877543222111113455654 64 466666665
No 16
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.69 E-value=1.2e-05 Score=83.05 Aligned_cols=41 Identities=41% Similarity=1.123 Sum_probs=35.8
Q ss_pred ccccccCC---CceEEecCCCCccCcCCCC--CCCCCCCCCCCCCC
Q 005906 363 ICSICQYG---GELVLCDDCPSSFHKSCLV--LNDLPKGNWFCPSC 403 (670)
Q Consensus 363 ~C~vC~dg---G~Ll~Cd~Cp~afH~~Cl~--l~~~p~g~W~C~~C 403 (670)
.|.+||.. .+|++||.|++.||++||. +.+.|+|.|.|..|
T Consensus 283 ~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KO 328 (336)
T KOG1244|consen 283 YCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLC 328 (336)
T ss_pred eeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHH
Confidence 68899853 4699999999999999999 56889999998776
No 17
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.65 E-value=9.6e-06 Score=63.74 Aligned_cols=48 Identities=23% Similarity=0.829 Sum_probs=35.0
Q ss_pred ccccCCCCCCccccccccccccccccCccccccccccccccccccccCCCCCCcccCCcch
Q 005906 405 CRICGIGKRKFEEKTEHSVDDVLRICGQCEHNFHVGCIEKSRAINLNNCSQNKWFCSDGCE 465 (670)
Q Consensus 405 C~iCg~~~~~~~~~~~~~~~~~ll~CdqCer~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~ 465 (670)
|.+|++. ..++.++.|+.|+++||..|+.+.. .....+.+.|+|+. |.
T Consensus 2 C~vC~~~----------~~~~~~i~C~~C~~~~H~~C~~~~~--~~~~~~~~~w~C~~-C~ 49 (51)
T PF00628_consen 2 CPVCGQS----------DDDGDMIQCDSCNRWYHQECVGPPE--KAEEIPSGDWYCPN-CR 49 (51)
T ss_dssp BTTTTSS----------CTTSSEEEBSTTSCEEETTTSTSSH--SHHSHHSSSBSSHH-HH
T ss_pred CcCCCCc----------CCCCCeEEcCCCChhhCcccCCCCh--hhccCCCCcEECcC-Cc
Confidence 6677764 2345599999999999999999864 22334445999986 64
No 18
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.62 E-value=2.8e-05 Score=90.66 Aligned_cols=69 Identities=35% Similarity=0.919 Sum_probs=56.7
Q ss_pred CCCCccCcCCCC--CCCCCCCCCCCCCCc--------------------ccccCCCCCCccccccccccccccccCcccc
Q 005906 378 DCPSSFHKSCLV--LNDLPKGNWFCPSCC--------------------CRICGIGKRKFEEKTEHSVDDVLRICGQCEH 435 (670)
Q Consensus 378 ~Cp~afH~~Cl~--l~~~p~g~W~C~~C~--------------------C~iCg~~~~~~~~~~~~~~~~~ll~CdqCer 435 (670)
.|+++||..|+. +...|+++|.|+.|. |.+|+.. +.++.|+.|..
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~e~c~ic~~~-------------g~~l~c~tC~~ 67 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDDDWDDAEQEACRICADG-------------GELLWCDTCPA 67 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccCCcchhhhhhhhhhcCC-------------CcEEEeccccH
Confidence 489999999998 556679999999884 4444333 45889999999
Q ss_pred ccccccccccccccccCCCCCCcccCCcc
Q 005906 436 NFHVGCIEKSRAINLNNCSQNKWFCSDGC 464 (670)
Q Consensus 436 ~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C 464 (670)
+||..|+.+ ++...|.+.|.|++ |
T Consensus 68 s~h~~cl~~----pl~~~p~~~~~c~R-c 91 (696)
T KOG0383|consen 68 SFHASCLGP----PLTPQPNGEFICPR-C 91 (696)
T ss_pred HHHHHccCC----CCCcCCccceeeee-e
Confidence 999999987 57888888899995 7
No 19
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.48 E-value=2.8e-05 Score=92.52 Aligned_cols=115 Identities=21% Similarity=0.494 Sum_probs=77.9
Q ss_pred CCCccccccccCCCceEEecCCCCccCcCCCC--CCCCCCCCCCCCCCc-ccccCCC-----C---------CCcccccc
Q 005906 358 KQNDEICSICQYGGELVLCDDCPSSFHKSCLV--LNDLPKGNWFCPSCC-CRICGIG-----K---------RKFEEKTE 420 (670)
Q Consensus 358 ~~ndd~C~vC~dgG~Ll~Cd~Cp~afH~~Cl~--l~~~p~g~W~C~~C~-C~iCg~~-----~---------~~~~~~~~ 420 (670)
..-+|.|.+|.+.|+++||..||+.||..|+. ...+|...|.|.-|. |++=+.. . ..+..+..
T Consensus 341 ~~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr~ 420 (1414)
T KOG1473|consen 341 IEYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDRY 420 (1414)
T ss_pred eeecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccCCCcCcc
Confidence 34567899999999999999999999999999 457899999998774 2221100 0 00000000
Q ss_pred -------------ccccccccccCc-ccccccc-ccccccccccccCCCCCCcccCCcchhhhHHHHhhc
Q 005906 421 -------------HSVDDVLRICGQ-CEHNFHV-GCIEKSRAINLNNCSQNKWFCSDGCEVISSCLHEIL 475 (670)
Q Consensus 421 -------------~~~~~~ll~Cdq-Cer~YH~-~Cl~~~~~~~l~~~p~~~WfC~~~C~~I~~~Lq~ll 475 (670)
.+.+++.+.|+- |+..||. .|+..... -..++.+.|+|.. |-.-.+.|..-+
T Consensus 421 gr~ywfi~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~--e~~L~d~i~~~~e-e~~rqM~lT~~l 487 (1414)
T KOG1473|consen 421 GRKYWFISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYV--EMYLCDGIWERRE-EIIRQMGLTEEL 487 (1414)
T ss_pred ccchhceeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHH--HHhhccchhhhHH-HHHHhccchhhh
Confidence 134567777876 9999998 99985431 2457788999997 554344444333
No 21
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.48 E-value=5.2e-05 Score=84.47 Aligned_cols=103 Identities=19% Similarity=0.440 Sum_probs=71.2
Q ss_pred ccccccC-----CCceEEecCCCCccCcCCCCCCCCCCCCCCCCCCc---------------------------------
Q 005906 363 ICSICQY-----GGELVLCDDCPSSFHKSCLVLNDLPKGNWFCPSCC--------------------------------- 404 (670)
Q Consensus 363 ~C~vC~d-----gG~Ll~Cd~Cp~afH~~Cl~l~~~p~g~W~C~~C~--------------------------------- 404 (670)
.|.+|.. +.++..|+.|.++||..|........+.|.+..|.
T Consensus 85 ~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~wD~~ 164 (464)
T KOG4323|consen 85 NPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLDWDSG 164 (464)
T ss_pred CCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCcccccccCcc
Confidence 4667764 34688899999999999987555555677777664
Q ss_pred ------ccccCCCCCCccccccccccccccccCccccccccccccccccccccCCCCCCcccCCcchhhhHHHHhh
Q 005906 405 ------CRICGIGKRKFEEKTEHSVDDVLRICGQCEHNFHVGCIEKSRAINLNNCSQNKWFCSDGCEVISSCLHEI 474 (670)
Q Consensus 405 ------C~iCg~~~~~~~~~~~~~~~~~ll~CdqCer~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~~I~~~Lq~l 474 (670)
|.+|... .. ..-..|++|+.|..+||..|+.+.....+-..+.+.|||.. |.+=.+.+..+
T Consensus 165 ~~~n~qc~vC~~g--~~------~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~-C~~~~~~~~r~ 231 (464)
T KOG4323|consen 165 HKVNLQCSVCYCG--GP------GAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDV-CNRGPKKVPRL 231 (464)
T ss_pred ccccceeeeeecC--Cc------CccceeeeecccccHHHHHhccCCCCHhhccCccceEeehh-hccchhhcccc
Confidence 3333222 00 11236999999999999999999753335566889999998 66544444444
No 22
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=97.43 E-value=0.00029 Score=62.60 Aligned_cols=61 Identities=23% Similarity=0.362 Sum_probs=53.1
Q ss_pred cEEEEEeecCEEeEee-------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCc
Q 005906 562 FYTILLERNEEVISVR-------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGF 624 (670)
Q Consensus 562 fYt~vLe~~~evVSvA-------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF 624 (670)
....|++.+|+||+.+ ...|||+|++++||+.+|+.+.. +++.|++.+...+...|.+ +||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~-~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLEPDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRK-LGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEETCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHH-TT-
T ss_pred CEEEEEEECCEEEEEEEEcCCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHh-CCC
Confidence 5667888899999888 77999999999999999999988 9999999999999999988 898
No 23
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.38 E-value=6.1e-05 Score=87.87 Aligned_cols=50 Identities=50% Similarity=1.210 Sum_probs=42.9
Q ss_pred CCCCccccccccCCCceEEecCCCCccCcCCCC--CCCCCCCCCCCCCCccc
Q 005906 357 EKQNDEICSICQYGGELVLCDDCPSSFHKSCLV--LNDLPKGNWFCPSCCCR 406 (670)
Q Consensus 357 ~~~ndd~C~vC~dgG~Ll~Cd~Cp~afH~~Cl~--l~~~p~g~W~C~~C~C~ 406 (670)
+..+...|.+|+++|++++||.|+.+||..|++ +...|.+.|.|+.|.|.
T Consensus 43 ~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 43 DDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred chhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 345566899999999999999999999999998 55678888999988654
No 24
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=97.32 E-value=0.00018 Score=70.33 Aligned_cols=84 Identities=31% Similarity=0.741 Sum_probs=57.4
Q ss_pred ccccccC------CCceEEecCCCCccCcCCCCC--------CCCCCCCC--CCCCCc---------------ccccCCC
Q 005906 363 ICSICQY------GGELVLCDDCPSSFHKSCLVL--------NDLPKGNW--FCPSCC---------------CRICGIG 411 (670)
Q Consensus 363 ~C~vC~d------gG~Ll~Cd~Cp~afH~~Cl~l--------~~~p~g~W--~C~~C~---------------C~iCg~~ 411 (670)
.|.+|+. .|.||.|-+|-.+||..|++. +.+-++.+ .|..|. |..|.+.
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~~kKD~~aP~~~~C~~C~~~ 80 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIAHKKDPRAPHHGMCQQCKKP 80 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChhhcccCCCCCCCcccccCCC
Confidence 4778853 367999999999999999993 23334443 688885 7777665
Q ss_pred CC---Ccc-------------ccc------------cccccccccccCccccccccccccccc
Q 005906 412 KR---KFE-------------EKT------------EHSVDDVLRICGQCEHNFHVGCIEKSR 446 (670)
Q Consensus 412 ~~---~~~-------------~~~------------~~~~~~~ll~CdqCer~YH~~Cl~~~~ 446 (670)
.. .|. ++. .+..+..|+.|..|.|+||...|++..
T Consensus 81 G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 81 GPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred CCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 21 000 000 013356789999999999999998854
No 25
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.29 E-value=0.00011 Score=84.88 Aligned_cols=51 Identities=31% Similarity=0.965 Sum_probs=43.5
Q ss_pred CCCcccccCCCCCCccccccccccccccccCccccc-cccccccccccccccCCCCCCcccCCcchh
Q 005906 401 PSCCCRICGIGKRKFEEKTEHSVDDVLRICGQCEHN-FHVGCIEKSRAINLNNCSQNKWFCSDGCEV 466 (670)
Q Consensus 401 ~~C~C~iCg~~~~~~~~~~~~~~~~~ll~CdqCer~-YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~~ 466 (670)
..|.|.+|+.. ..++.|+.||.|... ||+.||++ +|.++|-+.|||.. |..
T Consensus 214 E~~~C~IC~~~----------DpEdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC~N-C~d 265 (1134)
T KOG0825|consen 214 EEVKCDICTVH----------DPEDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYCTN-CSL 265 (1134)
T ss_pred ccccceeeccC----------ChHHhheeecccccceeeccccCc----ccccccccceecCc-chh
Confidence 35779999888 234579999999998 99999998 68999999999998 864
No 26
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=97.21 E-value=0.00074 Score=56.92 Aligned_cols=60 Identities=18% Similarity=0.301 Sum_probs=49.1
Q ss_pred EEEEEeecCEEeEee----------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCcee
Q 005906 563 YTILLERNEEVISVR----------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSK 626 (670)
Q Consensus 563 Yt~vLe~~~evVSvA----------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~ 626 (670)
+..+++.+++||+.+ ...||+||+++.||+.+++.+. -+.+++-+.+.+++.|.+ +||++
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~---~~~i~l~~~~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNEDFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAK---SKKIFLFTNPAAIKFYEK-LGFEE 79 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETTTEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHT---CSEEEEEEEHHHHHHHHH-TTEEE
T ss_pred EEEEEEECCEEEEEEEEEEcCCEEEEEEEEECHHHcCCCHHHHHHHHHHHHcC---CCcEEEEEcHHHHHHHHH-CcCCC
Confidence 456778889998877 7799999999999999987774 455677777888999987 99975
No 27
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.06 E-value=0.00033 Score=81.12 Aligned_cols=46 Identities=37% Similarity=0.998 Sum_probs=38.3
Q ss_pred CCccccccccCCC---ceEEecCCCCc-cCcCCCC--CCCCCCCCCCCCCCc
Q 005906 359 QNDEICSICQYGG---ELVLCDDCPSS-FHKSCLV--LNDLPKGNWFCPSCC 404 (670)
Q Consensus 359 ~ndd~C~vC~dgG---~Ll~Cd~Cp~a-fH~~Cl~--l~~~p~g~W~C~~C~ 404 (670)
....-|.+|.... -||+||.|..+ ||.+||+ +.++|-+.|||+.|.
T Consensus 213 ~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 213 QEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred cccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcch
Confidence 3344699998543 39999999998 9999999 457999999999995
No 28
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=96.96 E-value=0.0016 Score=54.38 Aligned_cols=47 Identities=21% Similarity=0.361 Sum_probs=40.0
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCCcch---hhhhhcccCce
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGV---VDTWTNKFGFS 625 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~---~~~Wt~kFGF~ 625 (670)
...||+||+.+.||+.+|..+...|+..+.+=..++- ..+|.+ +||+
T Consensus 34 ~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k-~Gf~ 83 (83)
T PF00583_consen 34 DPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEK-LGFE 83 (83)
T ss_dssp CGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHH-TTEE
T ss_pred cHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHH-cCCC
Confidence 8899999999999999999999999999877555444 477874 9996
No 29
>PTZ00330 acetyltransferase; Provisional
Probab=96.96 E-value=0.00099 Score=61.73 Aligned_cols=52 Identities=19% Similarity=0.361 Sum_probs=46.8
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecCHH
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTES 630 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~~ 630 (670)
...|||+|+++.||..++..+...++.+++|.+.+.+...+.+ +||......
T Consensus 91 ~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~k-~GF~~~~~~ 142 (147)
T PTZ00330 91 DPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYKK-LGFRACERQ 142 (147)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHHH-CCCEEeceE
Confidence 5689999999999999999999999999999998888888865 999988743
No 30
>PRK10314 putative acyltransferase; Provisional
Probab=96.91 E-value=0.0025 Score=61.29 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=43.6
Q ss_pred eccccccchhHHHHHHHHHHHHHh-CceeeeccCCcchhhhhhcccCceecCH
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIEL-GVERLVLPAVPGVVDTWTNKFGFSKMTE 629 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L-~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~ 629 (670)
...|||+|+++.||..++..+... +...+.|.|-..+...+.+ |||.++.+
T Consensus 83 ~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k-~GF~~~g~ 134 (153)
T PRK10314 83 SEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQS-FGFIPVTE 134 (153)
T ss_pred CHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHH-CCCEECCC
Confidence 668999999999999888888775 7888999887777777766 99999886
No 31
>PRK03624 putative acetyltransferase; Provisional
Probab=96.73 E-value=0.0027 Score=57.44 Aligned_cols=64 Identities=25% Similarity=0.398 Sum_probs=50.1
Q ss_pred EEEEeecCEEeEee----------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCc---chhhhhhcccCc
Q 005906 564 TILLERNEEVISVR----------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVP---GVVDTWTNKFGF 624 (670)
Q Consensus 564 t~vLe~~~evVSvA----------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~---e~~~~Wt~kFGF 624 (670)
..|+..++++|+.+ ...|||||+++.|+..++..+..+|+.++++=+.+ .+...| .++||
T Consensus 47 ~~v~~~~~~~vG~~~~~~~~~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y-~k~GF 125 (140)
T PRK03624 47 FLVAEVGGEVVGTVMGGYDGHRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFY-EALGY 125 (140)
T ss_pred EEEEEcCCcEEEEEEeeccCCCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHH-HHcCC
Confidence 34455667777655 67999999999999999999999999988765443 466777 56999
Q ss_pred eecC
Q 005906 625 SKMT 628 (670)
Q Consensus 625 ~~m~ 628 (670)
...+
T Consensus 126 ~~~~ 129 (140)
T PRK03624 126 EEQD 129 (140)
T ss_pred cccc
Confidence 9754
No 32
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=96.73 E-value=0.0069 Score=54.24 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=51.8
Q ss_pred EEEeecCEEeEee----------------eccccccchhHHHHHHHHHHHHHhCceeeec---cCCcchhhhhhcccCce
Q 005906 565 ILLERNEEVISVR----------------RMKHRRLGMCRVLMNELEKLLIELGVERLVL---PAVPGVVDTWTNKFGFS 625 (670)
Q Consensus 565 ~vLe~~~evVSvA----------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVL---PA~~e~~~~Wt~kFGF~ 625 (670)
++...++++|+.+ ...|||||+.+.|+..++..+...+..++++ ++-+.+...+++ +||+
T Consensus 34 ~~~~~~~~~vg~~~~~~~~~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~-~Gf~ 112 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIVLDEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKK-LGFN 112 (131)
T ss_pred EEEecCCeEEEEEEEEecCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHH-cCCC
Confidence 3445577887765 6799999999999999999999999999887 555557778865 9999
Q ss_pred ecCH
Q 005906 626 KMTE 629 (670)
Q Consensus 626 ~m~~ 629 (670)
....
T Consensus 113 ~~~~ 116 (131)
T TIGR01575 113 EIAI 116 (131)
T ss_pred cccc
Confidence 8754
No 33
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.59 E-value=0.00088 Score=70.92 Aligned_cols=34 Identities=29% Similarity=0.899 Sum_probs=28.9
Q ss_pred cccccCc--cc-cccccccccccccccccCCCCCCcccCCcchh
Q 005906 426 VLRICGQ--CE-HNFHVGCIEKSRAINLNNCSQNKWFCSDGCEV 466 (670)
Q Consensus 426 ~ll~Cdq--Ce-r~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~~ 466 (670)
.|+.||. |+ .|||..|.. |...|.|.|||++ |..
T Consensus 231 ~Mi~CDn~~C~~eWFH~~CVG------L~~~PkgkWyC~~-C~~ 267 (274)
T KOG1973|consen 231 KMIGCDNPGCPIEWFHFTCVG------LKTKPKGKWYCPR-CKA 267 (274)
T ss_pred cccccCCCCCCcceEEEeccc------cccCCCCcccchh-hhh
Confidence 4999998 99 899999975 5678999999996 653
No 34
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=96.57 E-value=0.01 Score=53.77 Aligned_cols=93 Identities=19% Similarity=0.227 Sum_probs=60.6
Q ss_pred HHHHHHHHHhccccccccchhhhhHHHHHhccCCcccccccccEEEEEeecCEEeEee----------------------
Q 005906 520 SVALDVMHECFEPIKDVLTERDLVEDVIFNRRSDLNRLNFQGFYTILLERNEEVISVR---------------------- 577 (670)
Q Consensus 520 s~AL~i~~EcF~Pi~D~~Tg~DlI~~mvy~r~S~~~r~df~GfYt~vLe~~~evVSvA---------------------- 577 (670)
..-.+++.++|.+-..+. ..+.+... .+.--+++|.+.+++||+.+
T Consensus 11 ~~i~~l~~~~F~~~~~~~------~~~~~~~~------~~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v 78 (127)
T PF13527_consen 11 EQIIELFNEAFGDSESPP------EIWEYFRN------LYGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDV 78 (127)
T ss_dssp HHHHHHHHHHTTT-CHHH------HHHHHHHH------HHHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCCCCch------hhhhhhhc------ccCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEE
Confidence 345677889997665543 12222221 11111456666688888766
Q ss_pred --eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceec
Q 005906 578 --RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKM 627 (670)
Q Consensus 578 --r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m 627 (670)
...|||||.++.||..++..+..-|+.-.+|=+. .. -.-.+|||..+
T Consensus 79 ~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~~--~~-~~Y~~~G~~~~ 127 (127)
T PF13527_consen 79 AVDPEYRGRGLGRQLMRALLERARERGVPFIFLFPS--SP-PFYRRFGFEYA 127 (127)
T ss_dssp EE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE-S--SH-HHHHHTTEEEE
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEecC--Ch-hhhhcCCCEEC
Confidence 6799999999999999999999999999887552 23 34467999863
No 35
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=96.38 E-value=0.0069 Score=65.91 Aligned_cols=73 Identities=27% Similarity=0.332 Sum_probs=63.4
Q ss_pred cccccEEEEEeecCEEeEee------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCce
Q 005906 558 NFQGFYTILLERNEEVISVR------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFS 625 (670)
Q Consensus 558 df~GfYt~vLe~~~evVSvA------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~ 625 (670)
+..--|++++..+++||+.| ...|||+|++..||+.|++.+...|+.+|.|=+-+...... .++||.
T Consensus 27 d~~~d~~vv~~~~~~lVg~g~l~g~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy-~klGF~ 105 (332)
T TIGR00124 27 DAPLEIFIAVYEDEEIIGCGGIAGNVIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALF-EYCGFK 105 (332)
T ss_pred cCCCCEEEEEEECCEEEEEEEEecCEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHH-HHcCCE
Confidence 44556788888899999887 67899999999999999999999999999999988887665 569999
Q ss_pred ecCHHH
Q 005906 626 KMTESE 631 (670)
Q Consensus 626 ~m~~~e 631 (670)
.+...+
T Consensus 106 ~i~~~~ 111 (332)
T TIGR00124 106 TLAEAK 111 (332)
T ss_pred Eeeeec
Confidence 998755
No 36
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=96.32 E-value=0.0088 Score=55.98 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=44.0
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceec
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKM 627 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m 627 (670)
...|||||+++.||+.+++.+..+|++++++-..++....+. ++||...
T Consensus 94 ~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~y~-k~GF~~~ 142 (150)
T PLN02706 94 DSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAFYE-KCGYVRK 142 (150)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHHHH-HCcCEEe
Confidence 568999999999999999999999999999988888888886 5899864
No 37
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=96.27 E-value=0.0082 Score=64.36 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=46.2
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecC
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMT 628 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~ 628 (670)
...|||||+++.||+.+|..+...|++++.|-+...+...|. ++||+.+.
T Consensus 34 ~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYe-k~GF~~~~ 83 (297)
T cd02169 34 CPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFR-GLGFKELA 83 (297)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHH-HCCCEEec
Confidence 778999999999999999999999999999999888877775 79999888
No 38
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.87 E-value=0.0054 Score=59.26 Aligned_cols=30 Identities=40% Similarity=1.058 Sum_probs=25.6
Q ss_pred ccCcCCCC--CCCCCCCCCCCCCCcccccCCC
Q 005906 382 SFHKSCLV--LNDLPKGNWFCPSCCCRICGIG 411 (670)
Q Consensus 382 afH~~Cl~--l~~~p~g~W~C~~C~C~iCg~~ 411 (670)
.||..||. |+.+|+|+|+|+.|.....+..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~~~ 32 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSGQS 32 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCCCc
Confidence 49999999 7899999999999987765544
No 39
>PHA00673 acetyltransferase domain containing protein
Probab=95.77 E-value=0.019 Score=56.06 Aligned_cols=61 Identities=23% Similarity=0.275 Sum_probs=49.5
Q ss_pred EEEEeecCEEeEee-----------------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCcch--hhhh
Q 005906 564 TILLERNEEVISVR-----------------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGV--VDTW 618 (670)
Q Consensus 564 t~vLe~~~evVSvA-----------------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~--~~~W 618 (670)
.+|.+.+|+||+.+ +..+||||.+++||...|+.+...|...|.|.|.|+- ++..
T Consensus 57 llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~fy 136 (154)
T PHA00673 57 FLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQLL 136 (154)
T ss_pred EEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHHH
Confidence 34556688999877 7799999999999999999999999999999999874 4444
Q ss_pred hcccCce
Q 005906 619 TNKFGFS 625 (670)
Q Consensus 619 t~kFGF~ 625 (670)
.. -|++
T Consensus 137 ~~-~g~~ 142 (154)
T PHA00673 137 PA-AGYR 142 (154)
T ss_pred Hh-CCch
Confidence 33 4544
No 40
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=95.68 E-value=0.027 Score=51.86 Aligned_cols=49 Identities=16% Similarity=0.113 Sum_probs=40.7
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCC---cchhhhhhcccCceec
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAV---PGVVDTWTNKFGFSKM 627 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~---~e~~~~Wt~kFGF~~m 627 (670)
...|||||+++.||..++......|...+.|=+. +.+...|.+ +||..-
T Consensus 85 ~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~-~Gf~~~ 136 (144)
T PRK10146 85 MPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLR-EGYEQS 136 (144)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHH-cCCchh
Confidence 5589999999999999999999999988866543 466777776 999765
No 41
>smart00258 SAND SAND domain.
Probab=95.67 E-value=0.0067 Score=52.05 Aligned_cols=44 Identities=32% Similarity=0.455 Sum_probs=32.4
Q ss_pred ceecCC--C-CCeeeccccccccCCcCCCCCceEEecCCCcchHHHHH
Q 005906 292 GIKCDC--C-SKVFTLSGFEAHAGSQKHRPTANIILNEGGKPLLECQK 336 (670)
Q Consensus 292 GI~C~C--C-~k~fSpS~FE~HAGss~~rP~~nI~L~~~G~SL~dc~~ 336 (670)
||.+.| + ++||||++||.+||....+-|...+-. +|.+|..+++
T Consensus 22 G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~ 68 (73)
T smart00258 22 GISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLME 68 (73)
T ss_pred CcccCCccCCCEEEChHHHHhhcCCcccCCcchheeE-CCccHHHHHH
Confidence 554444 5 689999999999996555567655555 6999987664
No 42
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=95.58 E-value=0.01 Score=57.74 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=60.6
Q ss_pred cccEEEEEeecCEEeEee-eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecCHHHH
Q 005906 560 QGFYTILLERNEEVISVR-RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTESER 632 (670)
Q Consensus 560 ~GfYt~vLe~~~evVSvA-r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~~e~ 632 (670)
-|.|++.-++-+||-|+| ..+||++|.+.+|+..|+..-..+|++++.+=+. -.+-|-.++||+.++.+++
T Consensus 55 ~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt--~~~~~F~~~GF~~vd~~~L 126 (153)
T COG1246 55 AALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT--RSPEFFAERGFTRVDKDEL 126 (153)
T ss_pred EeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec--ccHHHHHHcCCeECccccC
Confidence 456665566778888888 8899999999999999999999999999887765 4667999999999998654
No 43
>PLN02825 amino-acid N-acetyltransferase
Probab=95.54 E-value=0.02 Score=65.74 Aligned_cols=65 Identities=26% Similarity=0.433 Sum_probs=53.8
Q ss_pred EEEeecCEEeEee------------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCcee
Q 005906 565 ILLERNEEVISVR------------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSK 626 (670)
Q Consensus 565 ~vLe~~~evVSvA------------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~ 626 (670)
.|++.+++||+.| ...|||+|.+++||+.+|+....+|+++|.|-.. .+ .-|=.++||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Lltt-~a-~~fY~k~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLTT-RT-ADWFVRRGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEeC-cH-HHHHHHCCCEE
Confidence 4678888888776 6799999999999999999999999999977543 33 45888899999
Q ss_pred cCHHH
Q 005906 627 MTESE 631 (670)
Q Consensus 627 m~~~e 631 (670)
.+.++
T Consensus 488 ~~~~~ 492 (515)
T PLN02825 488 CSIES 492 (515)
T ss_pred eChhh
Confidence 76654
No 44
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.41 E-value=0.0076 Score=58.26 Aligned_cols=26 Identities=35% Similarity=0.976 Sum_probs=23.3
Q ss_pred ccccccccccccccccCCCCCCcccCCcchh
Q 005906 436 NFHVGCIEKSRAINLNNCSQNKWFCSDGCEV 466 (670)
Q Consensus 436 ~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~~ 466 (670)
.||..||+| +|..+|+|+|+|+. |..
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~Cp~-C~~ 26 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWICPF-CEV 26 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCCCC-CcC
Confidence 599999999 69999999999998 763
No 45
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=95.41 E-value=0.062 Score=56.17 Aligned_cols=64 Identities=19% Similarity=0.270 Sum_probs=50.3
Q ss_pred EEEEEeecCEEeEee------------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCcch---hhhhhcc
Q 005906 563 YTILLERNEEVISVR------------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGV---VDTWTNK 621 (670)
Q Consensus 563 Yt~vLe~~~evVSvA------------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~---~~~Wt~k 621 (670)
+..+.+.++++|+.+ ...|||||+++.||..+|..+...|+..+.+-+.... ..+. .+
T Consensus 159 ~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly-~k 237 (266)
T TIGR03827 159 VYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITF-AR 237 (266)
T ss_pred EEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHH-HH
Confidence 334556688888776 6799999999999999999999999999887665443 3344 57
Q ss_pred cCceec
Q 005906 622 FGFSKM 627 (670)
Q Consensus 622 FGF~~m 627 (670)
+||+..
T Consensus 238 ~GF~~~ 243 (266)
T TIGR03827 238 LGYAYG 243 (266)
T ss_pred cCCccc
Confidence 999864
No 46
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=95.40 E-value=0.081 Score=52.25 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=50.0
Q ss_pred ccEEEEEeecCEEeEee-----------------eccccccchhHHHHHHHHHHHHHhCceeeeccCC---cchhhhhhc
Q 005906 561 GFYTILLERNEEVISVR-----------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAV---PGVVDTWTN 620 (670)
Q Consensus 561 GfYt~vLe~~~evVSvA-----------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~---~e~~~~Wt~ 620 (670)
.++.++.+.++++|+.+ ...|||||+++.|+..++......|..++++-.. +.+...+.
T Consensus 101 ~~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ye- 179 (194)
T PRK10975 101 HQCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYI- 179 (194)
T ss_pred CcEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHH-
Confidence 33434444566777655 6689999999999999999999999999866533 45677775
Q ss_pred ccCceec
Q 005906 621 KFGFSKM 627 (670)
Q Consensus 621 kFGF~~m 627 (670)
++||...
T Consensus 180 k~Gf~~~ 186 (194)
T PRK10975 180 RSGANIE 186 (194)
T ss_pred HCCCeEe
Confidence 6999874
No 47
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.31 E-value=0.0079 Score=67.21 Aligned_cols=57 Identities=30% Similarity=0.779 Sum_probs=41.1
Q ss_pred cccccCCCCCCccccccccccccccccCccccccccccccccccccccCCCC----CCcccCCcch--hhhHHHHhhc
Q 005906 404 CCRICGIGKRKFEEKTEHSVDDVLRICGQCEHNFHVGCIEKSRAINLNNCSQ----NKWFCSDGCE--VISSCLHEIL 475 (670)
Q Consensus 404 ~C~iCg~~~~~~~~~~~~~~~~~ll~CdqCer~YH~~Cl~~~~~~~l~~~p~----~~WfC~~~C~--~I~~~Lq~ll 475 (670)
.|.+|.+. .+.-.++.||.|...||.+||.| ||..+|. ..|.|++ |. .-...-+++.
T Consensus 546 sCgiCkks----------~dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqCsE-Cdk~esSD~e~ei~ 608 (707)
T KOG0957|consen 546 SCGICKKS----------TDQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQCSE-CDKNESSDSEQEII 608 (707)
T ss_pred eeeeeccc----------hhhHHHhhcchhhceeeccccCC----ccccCcccccCcceeecc-cccccCcchhhhhc
Confidence 47888777 12234899999999999999999 5777764 4699998 83 2344445543
No 48
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=95.30 E-value=0.043 Score=51.15 Aligned_cols=51 Identities=25% Similarity=0.392 Sum_probs=40.7
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeecc---CCcchhhhhhcccCceecCH
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLP---AVPGVVDTWTNKFGFSKMTE 629 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLP---A~~e~~~~Wt~kFGF~~m~~ 629 (670)
...|||||+++.||..+++.+...|..++.+- +-..+...|.+ +||.....
T Consensus 72 ~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k-~Gf~~~~~ 125 (146)
T PRK09491 72 DPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYES-LGFNEVTI 125 (146)
T ss_pred CHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHH-cCCEEeee
Confidence 67899999999999999999999999887764 33445555554 99997764
No 49
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.29 E-value=0.0024 Score=47.50 Aligned_cols=33 Identities=36% Similarity=1.182 Sum_probs=20.2
Q ss_pred CceEEecCCCCccCcCCCCCCCCCCC-CCCCCCC
Q 005906 371 GELVLCDDCPSSFHKSCLVLNDLPKG-NWFCPSC 403 (670)
Q Consensus 371 G~Ll~Cd~Cp~afH~~Cl~l~~~p~g-~W~C~~C 403 (670)
..|+.|+.|.-++|..|.++..+|++ +|+|..|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcC
Confidence 46899999999999999998888887 8999876
No 50
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=95.22 E-value=0.0086 Score=62.13 Aligned_cols=34 Identities=29% Similarity=0.992 Sum_probs=28.3
Q ss_pred cccccC--cccc-ccccccccccccccccCCCCCCcccCCcchh
Q 005906 426 VLRICG--QCEH-NFHVGCIEKSRAINLNNCSQNKWFCSDGCEV 466 (670)
Q Consensus 426 ~ll~Cd--qCer-~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~~ 466 (670)
.|+-|| .|++ |||..|.. |++.|+|.|||+. |+.
T Consensus 233 qMVaCDn~nCkrEWFH~~CVG------Lk~pPKG~WYC~e-Ck~ 269 (271)
T COG5034 233 QMVACDNANCKREWFHLECVG------LKEPPKGKWYCPE-CKK 269 (271)
T ss_pred cceecCCCCCchhheeccccc------cCCCCCCcEeCHH-hHh
Confidence 389998 4887 89999974 6889999999965 875
No 51
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=95.16 E-value=0.11 Score=51.25 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=48.6
Q ss_pred EEeecCEEeEee-----------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCc---chhhhhhcccCce
Q 005906 566 LLERNEEVISVR-----------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVP---GVVDTWTNKFGFS 625 (670)
Q Consensus 566 vLe~~~evVSvA-----------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~---e~~~~Wt~kFGF~ 625 (670)
+.+.++++|+.+ ...|||+|+++.|+..++.....+|+.++.+...+ .+...+. +.||+
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~-klGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYI-RSGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH-HcCCc
Confidence 445577787655 57999999999999999999999999998887443 3566776 59998
Q ss_pred ec
Q 005906 626 KM 627 (670)
Q Consensus 626 ~m 627 (670)
..
T Consensus 182 ~~ 183 (191)
T TIGR02382 182 IE 183 (191)
T ss_pred cc
Confidence 54
No 52
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=95.02 E-value=0.071 Score=49.83 Aligned_cols=67 Identities=21% Similarity=0.395 Sum_probs=51.9
Q ss_pred cccEEEEEeecCEEeEee------------------eccccccchhHHHHHHHHHHH-HHhCceeeec---cCCcchhhh
Q 005906 560 QGFYTILLERNEEVISVR------------------RMKHRRLGMCRVLMNELEKLL-IELGVERLVL---PAVPGVVDT 617 (670)
Q Consensus 560 ~GfYt~vLe~~~evVSvA------------------r~~~RrqGmcr~L~~~IE~lL-~~L~Ve~LVL---PA~~e~~~~ 617 (670)
..+|.+.- .+|++|+.+ ...||++|.++.|+..|+..+ ..+|++++.+ +--..++..
T Consensus 50 ~~~~~v~~-~~g~iiG~~~~~~~~~~~~~~~~~~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~ 128 (155)
T PF13420_consen 50 QRLFLVAE-EDGKIIGYVSLRDIDPYNHTAELSIYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINF 128 (155)
T ss_dssp TEEEEEEE-CTTEEEEEEEEEESSSGTTEEEEEEEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHH
T ss_pred CcEEEEEE-cCCcEEEEEEEEeeeccCCEEEEeeEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHH
Confidence 33444443 799999888 568999999999999999999 9999999864 344456778
Q ss_pred hhcccCceecC
Q 005906 618 WTNKFGFSKMT 628 (670)
Q Consensus 618 Wt~kFGF~~m~ 628 (670)
|.+ +||+..-
T Consensus 129 ~~~-~GF~~~g 138 (155)
T PF13420_consen 129 YKK-LGFEEEG 138 (155)
T ss_dssp HHH-TTEEEEE
T ss_pred HHh-CCCEEEE
Confidence 887 9998754
No 53
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.56 E-value=0.0083 Score=75.64 Aligned_cols=46 Identities=41% Similarity=1.142 Sum_probs=39.9
Q ss_pred CCccccccccCCC---ceEEecCCCCccCcCCCC--CCCCCCCCCCCCCCc
Q 005906 359 QNDEICSICQYGG---ELVLCDDCPSSFHKSCLV--LNDLPKGNWFCPSCC 404 (670)
Q Consensus 359 ~ndd~C~vC~dgG---~Ll~Cd~Cp~afH~~Cl~--l~~~p~g~W~C~~C~ 404 (670)
.....|.+|...+ +++.|+.|.+.||..|+. +..+|.|+|+|+.|+
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~ 1156 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCR 1156 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccc
Confidence 4455799998543 599999999999999999 679999999999996
No 54
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=94.50 E-value=0.011 Score=66.32 Aligned_cols=43 Identities=35% Similarity=0.930 Sum_probs=34.9
Q ss_pred ccccccCC-----CceEEecCCCCccCcCCCC------CCCCCCCCCCCCCCcc
Q 005906 363 ICSICQYG-----GELVLCDDCPSSFHKSCLV------LNDLPKGNWFCPSCCC 405 (670)
Q Consensus 363 ~C~vC~dg-----G~Ll~Cd~Cp~afH~~Cl~------l~~~p~g~W~C~~C~C 405 (670)
.|.+|..| .+||.|+.|..+||..|+. +...+.+.|||..|.-
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 49999853 3699999999999999998 2345788999988853
No 55
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=94.48 E-value=0.07 Score=59.78 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=50.3
Q ss_pred EEeecCEEeEee------------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceec
Q 005906 566 LLERNEEVISVR------------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKM 627 (670)
Q Consensus 566 vLe~~~evVSvA------------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m 627 (670)
|++.++++|+.| ...|||||+++.||+.+|..+...|.++|.+=+ ..+...| .++||..+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~-~~a~~fY-~k~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLT-TRTGHWF-RERGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEee-cchHHHH-HHCCCEEC
Confidence 456677777766 679999999999999999999999999875433 3455655 56999999
Q ss_pred CHH
Q 005906 628 TES 630 (670)
Q Consensus 628 ~~~ 630 (670)
..+
T Consensus 404 g~~ 406 (429)
T TIGR01890 404 SVD 406 (429)
T ss_pred Chh
Confidence 775
No 56
>PRK09831 putative acyltransferase; Provisional
Probab=94.48 E-value=0.077 Score=49.88 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=47.6
Q ss_pred EEEeecCEEeEee------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecCHHH
Q 005906 565 ILLERNEEVISVR------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTESE 631 (670)
Q Consensus 565 ~vLe~~~evVSvA------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~~e 631 (670)
.|...++++|+.+ ...|||||+++.||+.++.....| .+.+...+.....+ |||.......
T Consensus 56 ~v~~~~~~iiG~~~~~~~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~l-----~v~~~~~a~~~Y~k-~Gf~~~g~~~ 128 (147)
T PRK09831 56 RVAVINAQPVGFITCIEHYIDMLFVDPEYTRRGVASALLKPLIKSESEL-----TVDASITAKPFFER-YGFQTVKQQR 128 (147)
T ss_pred EEEEECCEEEEEEEehhceeeeEEECHHHcCCCHHHHHHHHHHHHhhhe-----EeecchhhHHHHHH-CCCEEeeccc
Confidence 3456788998876 679999999999999999987664 44455556777766 9999887754
No 57
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.39 E-value=0.011 Score=74.54 Aligned_cols=50 Identities=24% Similarity=0.798 Sum_probs=41.5
Q ss_pred ccccCCCCCCccccccccccccccccCccccccccccccccccccccCCCCCCcccCCcchhhhH
Q 005906 405 CRICGIGKRKFEEKTEHSVDDVLRICGQCEHNFHVGCIEKSRAINLNNCSQNKWFCSDGCEVISS 469 (670)
Q Consensus 405 C~iCg~~~~~~~~~~~~~~~~~ll~CdqCer~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~~I~~ 469 (670)
|.+|... +.+..++.|+.|..+||..|+++ .+...|.+.|||+. |..-..
T Consensus 1111 c~~cr~k----------~~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C~~-c~~e~~ 1160 (1404)
T KOG1245|consen 1111 CKVCRRK----------KQDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMCPS-CRKEHR 1160 (1404)
T ss_pred hhhhhhc----------ccchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccCCc-cchhhh
Confidence 7777766 33456999999999999999999 47899999999998 876554
No 58
>PRK05279 N-acetylglutamate synthase; Validated
Probab=94.26 E-value=0.09 Score=59.06 Aligned_cols=64 Identities=20% Similarity=0.323 Sum_probs=50.8
Q ss_pred EEeecCEEeEee------------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceec
Q 005906 566 LLERNEEVISVR------------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKM 627 (670)
Q Consensus 566 vLe~~~evVSvA------------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m 627 (670)
+++.++++|+.| ...|||||.++.||..+++.+...|+.++.+-+ ..+...| .+|||..+
T Consensus 338 va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY-~k~GF~~~ 415 (441)
T PRK05279 338 VIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWF-LERGFVPV 415 (441)
T ss_pred EEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHH-HHCcCEEC
Confidence 445677777655 679999999999999999999999999986543 4466666 56999998
Q ss_pred CHHH
Q 005906 628 TESE 631 (670)
Q Consensus 628 ~~~e 631 (670)
..++
T Consensus 416 g~~~ 419 (441)
T PRK05279 416 DVDD 419 (441)
T ss_pred Chhh
Confidence 7643
No 59
>PRK07757 acetyltransferase; Provisional
Probab=93.74 E-value=0.14 Score=47.98 Aligned_cols=51 Identities=24% Similarity=0.358 Sum_probs=39.8
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecCHHH
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTESE 631 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~~e 631 (670)
...|||+|++..||..+++.....|+.++.+=.. ....+ .++||.+....+
T Consensus 74 ~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~--~~~~Y-~k~GF~~~~~~~ 124 (152)
T PRK07757 74 SEDYRGQGIGRMLVEACLEEARELGVKRVFALTY--QPEFF-EKLGFREVDKEA 124 (152)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHH-HHCCCEEccccc
Confidence 7799999999999999999999999998753221 23444 569999987643
No 60
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=93.64 E-value=0.016 Score=50.79 Aligned_cols=37 Identities=32% Similarity=0.437 Sum_probs=27.0
Q ss_pred CCeeeccccccccCCcCCCCCceEEecCCCcchHHHHH
Q 005906 299 SKVFTLSGFEAHAGSQKHRPTANIILNEGGKPLLECQK 336 (670)
Q Consensus 299 ~k~fSpS~FE~HAGss~~rP~~nI~L~~~G~SL~dc~~ 336 (670)
++||||++||.|||....+.|...+-. +|.||...++
T Consensus 41 g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~ 77 (82)
T PF01342_consen 41 GRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIE 77 (82)
T ss_dssp TEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHH
T ss_pred CcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHh
Confidence 899999999999996665556544444 6999987654
No 61
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=93.63 E-value=0.14 Score=38.55 Aligned_cols=31 Identities=29% Similarity=0.302 Sum_probs=28.8
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeec
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVL 608 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVL 608 (670)
...||++|+.+.||..+.+.+...|.+++++
T Consensus 34 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 34 LPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred CHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 7899999999999999999999999998875
No 62
>PRK07922 N-acetylglutamate synthase; Validated
Probab=93.47 E-value=0.16 Score=49.57 Aligned_cols=50 Identities=20% Similarity=0.378 Sum_probs=40.4
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecCHH
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTES 630 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~~ 630 (670)
...|||+|+++.||+.++......|++++.+=.. ....|.+ +||..+...
T Consensus 79 ~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~k-~GF~~~~~~ 128 (169)
T PRK07922 79 DPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFAR-HGFVEIDGT 128 (169)
T ss_pred CHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHHH-CCCEECccc
Confidence 7799999999999999999999999999875322 2455555 999987643
No 63
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=93.35 E-value=0.041 Score=61.74 Aligned_cols=43 Identities=35% Similarity=1.002 Sum_probs=34.4
Q ss_pred cccccccC-----CCceEEecCCCCccCcCCCCCC---CCCC-------CCCCCCCCc
Q 005906 362 EICSICQY-----GGELVLCDDCPSSFHKSCLVLN---DLPK-------GNWFCPSCC 404 (670)
Q Consensus 362 d~C~vC~d-----gG~Ll~Cd~Cp~afH~~Cl~l~---~~p~-------g~W~C~~C~ 404 (670)
.+|.||-+ .|+++-||.|+-..|-.|.|.. .+|. ..|||.-|.
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~ 177 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACL 177 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHh
Confidence 47999973 5889999999999999999932 2332 469999996
No 64
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=93.33 E-value=0.14 Score=49.61 Aligned_cols=52 Identities=27% Similarity=0.330 Sum_probs=44.3
Q ss_pred eccccccchhHHHHH-HHHHHHHHhCceeeeccCCcchhhhhhcccCceecCHH
Q 005906 578 RMKHRRLGMCRVLMN-ELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTES 630 (670)
Q Consensus 578 r~~~RrqGmcr~L~~-~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~~ 630 (670)
....||+|+++.||. +||......-=+-++|-|-.-+.++.-+ |||.+++++
T Consensus 85 ~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa~-~GFv~~~e~ 137 (155)
T COG2153 85 SPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYAS-FGFVRVGEE 137 (155)
T ss_pred CHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHHH-hCcEEcCch
Confidence 568999999999995 6777766666677999999999998887 999999986
No 65
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=92.50 E-value=0.29 Score=45.80 Aligned_cols=53 Identities=21% Similarity=0.418 Sum_probs=39.7
Q ss_pred eccccccchhHHHHHHHHHHHHH-hCceeeeccCC---cchhhhhhcccCceecCHHH
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIE-LGVERLVLPAV---PGVVDTWTNKFGFSKMTESE 631 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~-L~Ve~LVLPA~---~e~~~~Wt~kFGF~~m~~~e 631 (670)
...|||||+++.||+.+...... +|..++++-.. ..+...- .++||+......
T Consensus 87 ~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y-~k~GF~~~g~~~ 143 (162)
T PRK10140 87 DSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVY-KKYGFEIEGTGK 143 (162)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHH-HHCCCEEEeecc
Confidence 56899999999999999988877 78888766543 3334444 579999866543
No 66
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=92.40 E-value=0.066 Score=65.68 Aligned_cols=47 Identities=26% Similarity=0.721 Sum_probs=35.7
Q ss_pred cccccCCCCCCccccccccccccccccCccccccccccccccccccccCCCCCCcccCCcch
Q 005906 404 CCRICGIGKRKFEEKTEHSVDDVLRICGQCEHNFHVGCIEKSRAINLNNCSQNKWFCSDGCE 465 (670)
Q Consensus 404 ~C~iCg~~~~~~~~~~~~~~~~~ll~CdqCer~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~ 465 (670)
.|.||.+. +. ..-..+++||.|+.++|..|.. ..-+|+|.|+|-+ |-
T Consensus 221 ~C~iC~~~--~~------~n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlCr~-Cl 267 (1051)
T KOG0955|consen 221 VCCICLDG--EC------QNSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLCRR-CL 267 (1051)
T ss_pred cceeeccc--cc------CCCceEEEcCCCcchhhhhccC------CCCCCCCcEeehh-hc
Confidence 47777666 22 2224599999999999999987 3568899999977 64
No 67
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=92.08 E-value=0.3 Score=46.88 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=38.0
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeee---ccCCcchhhhhhcccCceec
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLV---LPAVPGVVDTWTNKFGFSKM 627 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LV---LPA~~e~~~~Wt~kFGF~~m 627 (670)
...|||||+++.||..+++.+...++.++. .+.-+.+...+. +|||+.-
T Consensus 75 ~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~-k~G~~~~ 126 (157)
T TIGR02406 75 DPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK-ALARRRG 126 (157)
T ss_pred ChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH-HhCcccC
Confidence 678999999999999999988876666644 455556666774 5999873
No 68
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=92.04 E-value=0.29 Score=56.77 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=42.3
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeee---ccCCcchhhhhhcccCceecCH
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLV---LPAVPGVVDTWTNKFGFSKMTE 629 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LV---LPA~~e~~~~Wt~kFGF~~m~~ 629 (670)
..+|||||+++.||..++..+...|..++. ++.-..+...+. ++||+.+..
T Consensus 164 ~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~-klGf~~~~~ 217 (547)
T TIGR03103 164 DPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYE-KLGFRRIPV 217 (547)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHH-HCCCEEeeE
Confidence 559999999999999999999999998874 455566777775 599988753
No 69
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=91.97 E-value=0.4 Score=44.94 Aligned_cols=71 Identities=27% Similarity=0.345 Sum_probs=50.2
Q ss_pred ccccEEEEEeecCEEeEee-----------------------eccccccchhHHHHHHHHHHHHHh-CceeeeccCCcch
Q 005906 559 FQGFYTILLERNEEVISVR-----------------------RMKHRRLGMCRVLMNELEKLLIEL-GVERLVLPAVPGV 614 (670)
Q Consensus 559 f~GfYt~vLe~~~evVSvA-----------------------r~~~RrqGmcr~L~~~IE~lL~~L-~Ve~LVLPA~~e~ 614 (670)
-.+.+..|...+|++|+.+ ...|||||+++.+|.++...+..- +++++++-..++-
T Consensus 45 ~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N 124 (152)
T PF13523_consen 45 DPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDN 124 (152)
T ss_dssp TTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-
T ss_pred cCCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCC
Confidence 4567778888888888766 568999999999999877766643 7999988666654
Q ss_pred hhhhh--cccCceecCH
Q 005906 615 VDTWT--NKFGFSKMTE 629 (670)
Q Consensus 615 ~~~Wt--~kFGF~~m~~ 629 (670)
..++- .++||+++..
T Consensus 125 ~~~~~~~~k~GF~~~g~ 141 (152)
T PF13523_consen 125 TRAIRLYEKAGFRKVGE 141 (152)
T ss_dssp HHHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHHcCCEEeeE
Confidence 44443 2799988654
No 70
>PHA01807 hypothetical protein
Probab=91.90 E-value=0.33 Score=47.27 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=32.2
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCCcch
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGV 614 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~ 614 (670)
...|||+|+++.||+.++......|+..|++-...+.
T Consensus 90 ~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n 126 (153)
T PHA01807 90 LPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGE 126 (153)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCc
Confidence 5589999999999999999999999999987655443
No 71
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=91.84 E-value=0.64 Score=48.53 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=43.3
Q ss_pred EEEEeecCEEeEee-----------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCcee
Q 005906 564 TILLERNEEVISVR-----------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSK 626 (670)
Q Consensus 564 t~vLe~~~evVSvA-----------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~ 626 (670)
..|...+++||+.+ ...|||||+++.||..++.... +.-.|.+......-.-+-.++||..
T Consensus 48 ~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~~~Gf~~ 125 (292)
T TIGR03448 48 HLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALASRLGLVP 125 (292)
T ss_pred EEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHHHCCCEE
Confidence 44555678888776 6799999999999999998753 2222333333233345566799987
Q ss_pred cCH
Q 005906 627 MTE 629 (670)
Q Consensus 627 m~~ 629 (670)
...
T Consensus 126 ~~~ 128 (292)
T TIGR03448 126 TRE 128 (292)
T ss_pred ccE
Confidence 754
No 72
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=91.72 E-value=0.26 Score=57.89 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=49.5
Q ss_pred EEEeecCEEeEee-----------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceec
Q 005906 565 ILLERNEEVISVR-----------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKM 627 (670)
Q Consensus 565 ~vLe~~~evVSvA-----------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m 627 (670)
.|++.+|+||+.+ ...|||||+++.||+.+|......|+.++.+=+. +. -+=.+|||+..
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~-~FYek~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VP-EFFMKQGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cH-HHHHHCCCEEC
Confidence 3456667777655 7799999999999999999999999999876332 23 45567999988
Q ss_pred CHHH
Q 005906 628 TESE 631 (670)
Q Consensus 628 ~~~e 631 (670)
...+
T Consensus 583 ~~~~ 586 (614)
T PRK12308 583 SKSL 586 (614)
T ss_pred Cccc
Confidence 7654
No 73
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=91.67 E-value=0.32 Score=50.77 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=41.1
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCC---cchhhhhhcccCceecCH
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAV---PGVVDTWTNKFGFSKMTE 629 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~---~e~~~~Wt~kFGF~~m~~ 629 (670)
...|||||+++.||..++..+...|+..+.+-.. ..+...+. ++||+....
T Consensus 235 ~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~-k~GF~~~~~ 288 (292)
T TIGR03448 235 DPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYE-KLGFTVAEV 288 (292)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHH-HcCCEEccc
Confidence 6789999999999999999999999888666543 34667775 599987653
No 74
>PRK10562 putative acetyltransferase; Provisional
Probab=91.64 E-value=0.28 Score=45.75 Aligned_cols=49 Identities=20% Similarity=0.246 Sum_probs=35.5
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecCH
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTE 629 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~ 629 (670)
...|||+|+++.||..++..+..+ .--|.+.-+.+...+.+ +||+....
T Consensus 77 ~~~~rg~G~g~~ll~~~~~~~~~~--~~~v~~~N~~s~~~y~k-~Gf~~~~~ 125 (145)
T PRK10562 77 APKAVRRGIGKALMQHVQQRYPHL--SLEVYQKNQRAVNFYHA-QGFRIVDS 125 (145)
T ss_pred CHHHcCCCHHHHHHHHHHhhCCeE--EEEEEcCChHHHHHHHH-CCCEEccc
Confidence 679999999999999998865433 22344555555666665 99999764
No 75
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=91.18 E-value=1 Score=42.73 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=45.7
Q ss_pred cCEEeEee-eccccccchhHHHHHHHHHHHHHhCc-eeee--ccCCcchhhhhhcccCceecCHHH
Q 005906 570 NEEVISVR-RMKHRRLGMCRVLMNELEKLLIELGV-ERLV--LPAVPGVVDTWTNKFGFSKMTESE 631 (670)
Q Consensus 570 ~~evVSvA-r~~~RrqGmcr~L~~~IE~lL~~L~V-e~LV--LPA~~e~~~~Wt~kFGF~~m~~~e 631 (670)
.++|.++| ...|||+|.+++|++.+++.+..-+. +.++ +.+..+..--|=.++||..+....
T Consensus 91 ~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~ 156 (177)
T COG0456 91 EGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIRK 156 (177)
T ss_pred ccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeeeh
Confidence 56899999 99999999999999999999988774 4433 333333333344459999876543
No 76
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=90.79 E-value=0.095 Score=58.84 Aligned_cols=45 Identities=20% Similarity=0.546 Sum_probs=34.0
Q ss_pred cccccCCCCCCccccccccccccccccCccccccccccccccccccccCCCCCCcccCC
Q 005906 404 CCRICGIGKRKFEEKTEHSVDDVLRICGQCEHNFHVGCIEKSRAINLNNCSQNKWFCSD 462 (670)
Q Consensus 404 ~C~iCg~~~~~~~~~~~~~~~~~ll~CdqCer~YH~~Cl~~~~~~~l~~~p~~~WfC~~ 462 (670)
.|.+|... +- .+-..+++||.|+-+.|..|... .-+|+|.|+|-+
T Consensus 195 ~C~~c~~t--~~------eN~naiVfCdgC~i~VHq~CYGI------~f~peG~WlCrk 239 (669)
T COG5141 195 ICTKCTST--HN------ENSNAIVFCDGCEICVHQSCYGI------QFLPEGFWLCRK 239 (669)
T ss_pred hhHhcccc--cc------CCcceEEEecCcchhhhhhcccc------eecCcchhhhhh
Confidence 46677665 11 22346999999999999999876 347889999976
No 77
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=90.39 E-value=0.62 Score=44.79 Aligned_cols=66 Identities=24% Similarity=0.457 Sum_probs=58.9
Q ss_pred cEEEEEe--ecCEEeEee-----------------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhh
Q 005906 562 FYTILLE--RNEEVISVR-----------------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVD 616 (670)
Q Consensus 562 fYt~vLe--~~~evVSvA-----------------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~ 616 (670)
.|.+|+| ..++||++| ...||||+.++.|+..+=.+-.+||+=++.|--.++.+.
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 6777775 458999988 569999999999999999999999999999999999999
Q ss_pred hhhcccCceecC
Q 005906 617 TWTNKFGFSKMT 628 (670)
Q Consensus 617 ~Wt~kFGF~~m~ 628 (670)
.+.. |||+.-.
T Consensus 133 FYeK-cG~s~~~ 143 (150)
T KOG3396|consen 133 FYEK-CGYSNAG 143 (150)
T ss_pred HHHH-cCccccc
Confidence 9876 9998755
No 78
>PRK10514 putative acetyltransferase; Provisional
Probab=90.06 E-value=0.65 Score=42.91 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=46.2
Q ss_pred EeecCEEeEee------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecCHHH
Q 005906 567 LERNEEVISVR------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTESE 631 (670)
Q Consensus 567 Le~~~evVSvA------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~~e 631 (670)
.+.++++|+.. ...|||||+++.||+.++..+. .+...|.+.-..+...+. |+||+......
T Consensus 55 ~~~~~~~iG~~~~~~~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~--~i~~~v~~~N~~a~~~ye-k~Gf~~~~~~~ 128 (145)
T PRK10514 55 VDERDQPVGFMLLSGGHMEALFVDPDVRGCGVGRMLVEHALSLHP--ELTTDVNEQNEQAVGFYK-KMGFKVTGRSE 128 (145)
T ss_pred EecCCcEEEEEEEecCcEeEEEECHHhccCCHHHHHHHHHHHhcc--ccEEEeecCCHHHHHHHH-HCCCEEecccc
Confidence 34566777544 7799999999999999998754 455566676667777775 69999876544
No 79
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=90.02 E-value=0.81 Score=45.48 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=67.3
Q ss_pred cccccEEEEEeec-CEEeEee---------------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCc--c
Q 005906 558 NFQGFYTILLERN-EEVISVR---------------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVP--G 613 (670)
Q Consensus 558 df~GfYt~vLe~~-~evVSvA---------------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~--e 613 (670)
.=.|||-+|++.+ +.|+.-| +..+||+|.++.|+.++=.....+||..||---.+ .
T Consensus 48 ~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~ 127 (169)
T COG1247 48 TRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVELSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNL 127 (169)
T ss_pred ccCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEEEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCc
Confidence 4467888888766 8998766 66889999999999999999999999887643222 2
Q ss_pred hhhhhhcccCceecCHHHHhhhccceeeeeCCCccccccccC
Q 005906 614 VVDTWTNKFGFSKMTESERLQYSDYTFLDFQDTTMCQKLLRK 655 (670)
Q Consensus 614 ~~~~Wt~kFGF~~m~~~e~~~~~~~~l~~F~gt~mlqK~L~~ 655 (670)
+.--=-.+|||...-..... ..-+-.+=.+.++|+.|.+
T Consensus 128 aSi~lh~~~GF~~~G~~~~v---g~k~g~wld~~~~~~~l~~ 166 (169)
T COG1247 128 ASIALHEKLGFEEVGTFPEV---GDKFGRWLDLVLMQLLLEE 166 (169)
T ss_pred HhHHHHHHCCCEEecccccc---ccccceEEeeeeeehhhcc
Confidence 22233347999988765443 2334455567777777764
No 80
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=89.86 E-value=0.71 Score=44.84 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=47.5
Q ss_pred EEeecCEEeEee------------------eccccccchhHHHHHHHHHHH-HHhCceeeeccCCc---chhhhhhcccC
Q 005906 566 LLERNEEVISVR------------------RMKHRRLGMCRVLMNELEKLL-IELGVERLVLPAVP---GVVDTWTNKFG 623 (670)
Q Consensus 566 vLe~~~evVSvA------------------r~~~RrqGmcr~L~~~IE~lL-~~L~Ve~LVLPA~~---e~~~~Wt~kFG 623 (670)
+++.++++|+.+ ...|||+|+++.++..+.... ..++++++++-+.. .+.....+ +|
T Consensus 61 ~i~~~g~~iG~~~~~~~~~~~~~~~~~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek-~G 139 (186)
T PRK15130 61 VVECDGEKAGLVELVEINHVHRRAEFQIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRK-LG 139 (186)
T ss_pred EEEECCEEEEEEEEEeecCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHH-CC
Confidence 445677777766 468999999999999888755 56999999876543 34566665 99
Q ss_pred ceecCH
Q 005906 624 FSKMTE 629 (670)
Q Consensus 624 F~~m~~ 629 (670)
|+....
T Consensus 140 F~~~~~ 145 (186)
T PRK15130 140 FEVEGE 145 (186)
T ss_pred CEEEEE
Confidence 998754
No 81
>PRK01346 hypothetical protein; Provisional
Probab=89.23 E-value=0.76 Score=50.79 Aligned_cols=52 Identities=29% Similarity=0.341 Sum_probs=41.6
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecCHHHH
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTESER 632 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~~e~ 632 (670)
...|||||++++||..++..+...|+...+|=+.. ..+ =.+|||........
T Consensus 88 ~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~-Y~r~Gf~~~~~~~~ 139 (411)
T PRK01346 88 APTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGI-YGRFGYGPATYSQS 139 (411)
T ss_pred ChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhh-HhhCCCeeccceEE
Confidence 77999999999999999999999999877775443 244 45699998876543
No 82
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=89.11 E-value=0.34 Score=54.38 Aligned_cols=42 Identities=26% Similarity=0.533 Sum_probs=33.4
Q ss_pred CCCCCCcccccCCCCCCccccccccccccccccCccccccccccccccc
Q 005906 398 WFCPSCCCRICGIGKRKFEEKTEHSVDDVLRICGQCEHNFHVGCIEKSR 446 (670)
Q Consensus 398 W~C~~C~C~iCg~~~~~~~~~~~~~~~~~ll~CdqCer~YH~~Cl~~~~ 446 (670)
=||..|.|.+|++. +++. ++-..+.||-|+++.|..|.-...
T Consensus 124 gFC~~C~C~iC~kf--D~~~-----n~~~Wi~Cd~CgH~cH~dCALr~~ 165 (446)
T PF07227_consen 124 GFCRRCMCCICSKF--DDNK-----NTCSWIGCDVCGHWCHLDCALRHE 165 (446)
T ss_pred CccccCCccccCCc--ccCC-----CCeeEEeccCCCceehhhhhcccc
Confidence 48999999999876 4443 334589999999999999976544
No 83
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=88.61 E-value=0.18 Score=59.22 Aligned_cols=47 Identities=21% Similarity=0.673 Sum_probs=35.3
Q ss_pred cccccCCCCCCccccccccccccccccCccccccccccccccccccccCCCCCCcccCCcch
Q 005906 404 CCRICGIGKRKFEEKTEHSVDDVLRICGQCEHNFHVGCIEKSRAINLNNCSQNKWFCSDGCE 465 (670)
Q Consensus 404 ~C~iCg~~~~~~~~~~~~~~~~~ll~CdqCer~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~ 465 (670)
.|.+|..+ +-+ ....|++||.|.-..|..|... .++|++.|.|.. |.
T Consensus 273 iCDvCrsp--D~e------~~neMVfCd~Cn~cVHqaCyGI------le~p~gpWlCr~-Ca 319 (893)
T KOG0954|consen 273 ICDVCRSP--DSE------EANEMVFCDKCNICVHQACYGI------LEVPEGPWLCRT-CA 319 (893)
T ss_pred eeceecCC--Ccc------ccceeEEeccchhHHHHhhhce------eecCCCCeeehh-cc
Confidence 46677666 322 2234999999999999999864 578899999976 54
No 84
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=87.65 E-value=1.1 Score=43.85 Aligned_cols=51 Identities=14% Similarity=0.200 Sum_probs=39.2
Q ss_pred eccccccchhHHHHHHHHHHHHH-hCceeeeccCCcchhhh--hhcccCceecC
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIE-LGVERLVLPAVPGVVDT--WTNKFGFSKMT 628 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~-L~Ve~LVLPA~~e~~~~--Wt~kFGF~~m~ 628 (670)
...|||||+.+.++..+-..+.. ||+.++++-..++-... =-.|+||+...
T Consensus 112 ~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g 165 (194)
T PRK10809 112 GQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEG 165 (194)
T ss_pred CHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEe
Confidence 55899999999999998888754 89999988876654332 23479999644
No 85
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=87.43 E-value=1.1 Score=44.20 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=43.2
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCCcc---hhhhhhcccCceecCHH
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPG---VVDTWTNKFGFSKMTES 630 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e---~~~~Wt~kFGF~~m~~~ 630 (670)
+..|||||.+.+|+..+=....+.|++..||-+-.. |+....+ |||..+-..
T Consensus 93 ~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~s-LGF~r~~r~ 147 (165)
T KOG3139|consen 93 DSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYES-LGFKRDKRL 147 (165)
T ss_pred chhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHh-cCceEecce
Confidence 779999999999999988889999999999966544 5566666 999986543
No 86
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=87.33 E-value=0.65 Score=53.72 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=43.9
Q ss_pred ccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecCH
Q 005906 579 MKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTE 629 (670)
Q Consensus 579 ~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~ 629 (670)
..||++|+++.||..+|+.+...|++.+.|-+-..+...+. ++||....+
T Consensus 467 ~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~~A~~FY~-klGf~~~g~ 516 (522)
T TIGR01211 467 DEWQHRGYGRRLLEEAERIAAEEGSEKILVISGIGVREYYR-KLGYELDGP 516 (522)
T ss_pred hhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCchHHHHHH-HCCCEEEcc
Confidence 68999999999999999999999999999988777777776 699987543
No 87
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=87.15 E-value=1.2 Score=47.91 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=39.9
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCC-----cchhhhhhcccCcee
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAV-----PGVVDTWTNKFGFSK 626 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~-----~e~~~~Wt~kFGF~~ 626 (670)
+..+||+|+.+.||+.+++.+...|++++.|-.. ..+...+. ++||..
T Consensus 266 s~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~-~~GF~~ 318 (320)
T TIGR01686 266 SCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYE-QIGFED 318 (320)
T ss_pred cHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHH-HcCCcc
Confidence 7799999999999999999999999998887542 34566665 699984
No 88
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=86.73 E-value=0.13 Score=38.23 Aligned_cols=31 Identities=26% Similarity=0.752 Sum_probs=16.3
Q ss_pred cccccCccccccccccccccccccccCCCCC-CcccCC
Q 005906 426 VLRICGQCEHNFHVGCIEKSRAINLNNCSQN-KWFCSD 462 (670)
Q Consensus 426 ~ll~CdqCer~YH~~Cl~~~~~~~l~~~p~~-~WfC~~ 462 (670)
.++.|+.|.-..|..|.... ..|.+ .|+|..
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~------~~~~~~~W~C~~ 34 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVS------EVPDGDDWLCDR 34 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-S------S--SS-----HH
T ss_pred ceEEeCCCCCcCChhhCCcc------cCCCCCcEECCc
Confidence 48999999999999998763 23333 699964
No 89
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=86.72 E-value=0.3 Score=56.96 Aligned_cols=36 Identities=28% Similarity=0.786 Sum_probs=30.3
Q ss_pred cccccccC--ccccccccccccccccccccCCCCCCcccCCcchh
Q 005906 424 DDVLRICG--QCEHNFHVGCIEKSRAINLNNCSQNKWFCSDGCEV 466 (670)
Q Consensus 424 ~~~ll~Cd--qCer~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~~ 466 (670)
+..++.|| .|.-+.|..|... ..+|.|.|||-+ |..
T Consensus 19 eNPLVYCDG~nCsVAVHQaCYGI------vqVPtGpWfCrK-Ces 56 (900)
T KOG0956|consen 19 ENPLVYCDGHNCSVAVHQACYGI------VQVPTGPWFCRK-CES 56 (900)
T ss_pred cCceeeecCCCceeeeehhccee------EecCCCchhhhh-hhh
Confidence 45699998 5999999999865 568999999987 764
No 90
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=85.38 E-value=0.64 Score=42.17 Aligned_cols=69 Identities=23% Similarity=0.551 Sum_probs=44.0
Q ss_pred ccccccCCCceEEecCCCCccCcCCCCC-C----------------CCCCCCCCCCCCcccccCCCCCCccccccccccc
Q 005906 363 ICSICQYGGELVLCDDCPSSFHKSCLVL-N----------------DLPKGNWFCPSCCCRICGIGKRKFEEKTEHSVDD 425 (670)
Q Consensus 363 ~C~vC~dgG~Ll~Cd~Cp~afH~~Cl~l-~----------------~~p~g~W~C~~C~C~iCg~~~~~~~~~~~~~~~~ 425 (670)
.|.+|...|..+.-..-..+.|..|.-. + .++...| .=.|.+|+.. .+
T Consensus 2 ~C~lC~~~~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~---~~~C~iC~~~------------~G 66 (110)
T PF13832_consen 2 SCVLCPKRGGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRF---KLKCSICGKS------------GG 66 (110)
T ss_pred ccEeCCCCCCcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhc---CCcCcCCCCC------------Cc
Confidence 4888887554444444567888888751 1 1111111 1136777665 23
Q ss_pred cccccCc--cccccccccccccc
Q 005906 426 VLRICGQ--CEHNFHVGCIEKSR 446 (670)
Q Consensus 426 ~ll~Cdq--Cer~YH~~Cl~~~~ 446 (670)
..+.|.. |...||+.|....+
T Consensus 67 ~~i~C~~~~C~~~fH~~CA~~~g 89 (110)
T PF13832_consen 67 ACIKCSHPGCSTAFHPTCARKAG 89 (110)
T ss_pred eeEEcCCCCCCcCCCHHHHHHCC
Confidence 4889998 99999999987765
No 91
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=84.91 E-value=1.8 Score=39.34 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=35.8
Q ss_pred eccccccchhHHHHHHHHHHH-HHhCceeeeccCCcchhh--hhhcccCce
Q 005906 578 RMKHRRLGMCRVLMNELEKLL-IELGVERLVLPAVPGVVD--TWTNKFGFS 625 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL-~~L~Ve~LVLPA~~e~~~--~Wt~kFGF~ 625 (670)
...|||+|++..++..+-..+ ..+++.+++....++-+. .--.|.||+
T Consensus 92 ~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 92 GPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp EGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred hHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 557999999999999988887 799999998877664433 334456664
No 92
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=84.11 E-value=1.7 Score=45.94 Aligned_cols=63 Identities=22% Similarity=0.345 Sum_probs=45.0
Q ss_pred EEEeecCEEeEee-----------------eccccccchhHHHHHHH-HHHHHHhCceeeeccCCcch-hhhhhcccCce
Q 005906 565 ILLERNEEVISVR-----------------RMKHRRLGMCRVLMNEL-EKLLIELGVERLVLPAVPGV-VDTWTNKFGFS 625 (670)
Q Consensus 565 ~vLe~~~evVSvA-----------------r~~~RrqGmcr~L~~~I-E~lL~~L~Ve~LVLPA~~e~-~~~Wt~kFGF~ 625 (670)
.-++-+|+|||+| ..+||++||..+|+.++ |++|..=+.-.|..-+...+ -.+. .+.||+
T Consensus 180 ~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY-~riGF~ 258 (268)
T COG3393 180 YFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIY-QRIGFR 258 (268)
T ss_pred EEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHH-HHhCCe
Confidence 3456666999999 66999999999999998 56777666666666433333 3344 458998
Q ss_pred ecC
Q 005906 626 KMT 628 (670)
Q Consensus 626 ~m~ 628 (670)
++-
T Consensus 259 ~~g 261 (268)
T COG3393 259 EIG 261 (268)
T ss_pred ecc
Confidence 764
No 93
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=83.30 E-value=0.9 Score=51.83 Aligned_cols=46 Identities=30% Similarity=0.582 Sum_probs=33.5
Q ss_pred CCCCccccccccCCCceEEecCCCCccCcCCCCCCCCCCCCCCCCCC
Q 005906 357 EKQNDEICSICQYGGELVLCDDCPSSFHKSCLVLNDLPKGNWFCPSC 403 (670)
Q Consensus 357 ~~~ndd~C~vC~dgG~Ll~Cd~Cp~afH~~Cl~l~~~p~g~W~C~~C 403 (670)
...+.+.|.+|.+||.+++|+.|+.++|..|.... .|+..|.|..|
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~~-~~~c~~~~~d~ 130 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPAQ-LEKCSKRCTDC 130 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcCcc-CcccccCCcce
Confidence 45667899999999999999977777777777643 34444554444
No 94
>PRK13688 hypothetical protein; Provisional
Probab=82.98 E-value=3 Score=40.59 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=35.8
Q ss_pred EeEee-eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecCHH
Q 005906 573 VISVR-RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTES 630 (670)
Q Consensus 573 vVSvA-r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~~ 630 (670)
|-.+| ...|||||++++||+.+++ .++.-.+. +...+...|. ++||..+...
T Consensus 82 L~~l~V~p~~rgkGiG~~Ll~~a~~----~~~~~~~~-~~~~a~~FY~-k~GF~~~~~~ 134 (156)
T PRK13688 82 LWKLEVLPKYQNRGYGEMLVDFAKS----FQLPIKTI-ARNKSKDFWL-KLGFTPVEYK 134 (156)
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHH----hCCeEEEE-eccchHHHHH-hCCCEEeEEe
Confidence 33444 8899999999999987654 34333344 3445677776 5999988654
No 95
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=82.52 E-value=3.8 Score=39.49 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=44.4
Q ss_pred ecCEEeEee------------------eccccccchhHHHHHHHHHHH-HHhCceeeeccCCcc---hhhhhhcccCcee
Q 005906 569 RNEEVISVR------------------RMKHRRLGMCRVLMNELEKLL-IELGVERLVLPAVPG---VVDTWTNKFGFSK 626 (670)
Q Consensus 569 ~~~evVSvA------------------r~~~RrqGmcr~L~~~IE~lL-~~L~Ve~LVLPA~~e---~~~~Wt~kFGF~~ 626 (670)
.++++|..+ ...|||||+...++.++-+.+ ..++++++++-+.++ ....+ .|+||+.
T Consensus 74 ~~~~~iG~~~l~~~~~~~~~~~ig~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~-ek~Gf~~ 152 (179)
T PRK10151 74 KEDELIGVLSFNRIEPLNKTAYIGYWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVA-LRNGFTL 152 (179)
T ss_pred ECCEEEEEEEEEeeccCCCceEEEEEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHH-HHCCCEE
Confidence 478888776 568999999999998776655 568899987654443 34555 4699997
Q ss_pred cCHH
Q 005906 627 MTES 630 (670)
Q Consensus 627 m~~~ 630 (670)
.-..
T Consensus 153 ~g~~ 156 (179)
T PRK10151 153 EGCL 156 (179)
T ss_pred EeEe
Confidence 5443
No 96
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=81.94 E-value=3.9 Score=37.98 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=46.7
Q ss_pred eecCEEeEee------------------eccccccchhHHHHHHHHHHHH-HhCceeeeccCCcc--hhhhhhcccCcee
Q 005906 568 ERNEEVISVR------------------RMKHRRLGMCRVLMNELEKLLI-ELGVERLVLPAVPG--VVDTWTNKFGFSK 626 (670)
Q Consensus 568 e~~~evVSvA------------------r~~~RrqGmcr~L~~~IE~lL~-~L~Ve~LVLPA~~e--~~~~Wt~kFGF~~ 626 (670)
+.++++|+.+ ...+| +|+++.++.+++.... .+++.++++-..++ ..--.-.++||+.
T Consensus 57 ~~~g~~vG~~~~~~~~~~~~~~~~g~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~ 135 (156)
T TIGR03585 57 CQESRPIGVISFTDINLVHKSAFWGIYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFER 135 (156)
T ss_pred EECCEEEEEEEEEecChhhCeEEEEEEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeE
Confidence 4678888766 24567 9999999999999865 58999998764443 3334556799998
Q ss_pred cCHHHH
Q 005906 627 MTESER 632 (670)
Q Consensus 627 m~~~e~ 632 (670)
......
T Consensus 136 ~g~~~~ 141 (156)
T TIGR03585 136 EGVFRQ 141 (156)
T ss_pred eeeehh
Confidence 765443
No 97
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=81.90 E-value=2.4 Score=43.13 Aligned_cols=88 Identities=17% Similarity=0.317 Sum_probs=55.2
Q ss_pred ccchhhhhHHHHHhccCCcccccccccEEEEEeecCEEeEee-eccccccchhHHHHHHHHHHHH---------------
Q 005906 536 VLTERDLVEDVIFNRRSDLNRLNFQGFYTILLERNEEVISVR-RMKHRRLGMCRVLMNELEKLLI--------------- 599 (670)
Q Consensus 536 ~~Tg~DlI~~mvy~r~S~~~r~df~GfYt~vLe~~~evVSvA-r~~~RrqGmcr~L~~~IE~lL~--------------- 599 (670)
.|..-||||..+-.- +...+|... .+-.||=+| ...+|++||+.+|++.+++...
T Consensus 65 rRp~G~LiP~~L~~~---~~~~~f~~l------~g~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~ 135 (196)
T PF13718_consen 65 RRPKGHLIPQTLAQH---FGDPEFAQL------SGARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLP 135 (196)
T ss_dssp ---SS-HHHHHHHHH---SS-TTGGGS------EEEEEEEEEE-CCC-SSSHHHHHHHHHHHT-----------------
T ss_pred CCCCCCCHHHHHHHH---hCCHHHHhh------cceeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhccccccccccccc
Confidence 355678999999765 455566653 345888899 8899999999999999999883
Q ss_pred ----------HhCceeeec--cCCcchhhhhhcccCceecCHHHHh
Q 005906 600 ----------ELGVERLVL--PAVPGVVDTWTNKFGFSKMTESERL 633 (670)
Q Consensus 600 ----------~L~Ve~LVL--PA~~e~~~~Wt~kFGF~~m~~~e~~ 633 (670)
.-+|.-|=. =+.+++...|.+ -||.++=-.+..
T Consensus 136 ~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k-~gf~pv~l~~~~ 180 (196)
T PF13718_consen 136 PLLSKLSDRRPPGVDYLGTSFGATPELLKFWQK-NGFVPVYLGQTR 180 (196)
T ss_dssp ------------S-SEEEEEEE--HHHHHHHHC-TT-EEEEE-SS-
T ss_pred ccccccccccccCCCEEEeccCCCHHHHHHHHH-CCcEEEEEecCc
Confidence 345554432 256889999998 899988665544
No 98
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=81.31 E-value=6.2 Score=38.84 Aligned_cols=102 Identities=18% Similarity=0.206 Sum_probs=69.3
Q ss_pred hhHHHHHHHHHHhccccccccchhhhhHHHHHhccCCcccccccccEEEEEee-cCEEeEee------------------
Q 005906 517 SKLSVALDVMHECFEPIKDVLTERDLVEDVIFNRRSDLNRLNFQGFYTILLER-NEEVISVR------------------ 577 (670)
Q Consensus 517 skLs~AL~i~~EcF~Pi~D~~Tg~DlI~~mvy~r~S~~~r~df~GfYt~vLe~-~~evVSvA------------------ 577 (670)
-+|=.-|+.|+++-+|.+...+ +|-.+- |.+-.|.=.+.+.++. +++++.-|
T Consensus 18 ~rLikela~Fek~~~~v~~te~--~l~~~~-------F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYle 88 (163)
T KOG3216|consen 18 LRLIKELAEFEKLEDQVEATEE--NLARDG-------FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYLE 88 (163)
T ss_pred HHHHHHHHHHHHhccchhhchh--hhhhhh-------ccCCCccEEEEEEEecCCCceeEEeeeecccccccccceEEEE
Confidence 4555668888888888866433 332221 4445666666777766 78888877
Q ss_pred ----eccccccchhHHHHHHHHHHHHHhCcee---eeccCCcchhhhhhcccCceecC
Q 005906 578 ----RMKHRRLGMCRVLMNELEKLLIELGVER---LVLPAVPGVVDTWTNKFGFSKMT 628 (670)
Q Consensus 578 ----r~~~RrqGmcr~L~~~IE~lL~~L~Ve~---LVLPA~~e~~~~Wt~kFGF~~m~ 628 (670)
|.+|||+|+++.|+..+=+.-..+|..+ +|+---.-+....+. -|.+.++
T Consensus 89 DlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k-~gaq~l~ 145 (163)
T KOG3216|consen 89 DLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEK-VGAQDLK 145 (163)
T ss_pred eeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHH-hCccccc
Confidence 8999999999999999999888888766 455444444444443 4444433
No 99
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=78.99 E-value=13 Score=37.10 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=52.1
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecCHHHHhhhccceeeeeCCCccccccccC
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTESERLQYSDYTFLDFQDTTMCQKLLRK 655 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~~e~~~~~~~~l~~F~gt~mlqK~L~~ 655 (670)
+..||+||.+++||..-++.|..+|....|+=-.+ +.=.+|||++.......- +.. +|.+.+|-+.|..
T Consensus 84 ~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGdp----~YY~rfGF~~~~~~~l~~----p~~-~~~~~fl~~~L~~ 152 (171)
T COG3153 84 DPEYQGQGIGSALVREGLEALRLAGASAVVVLGDP----TYYSRFGFEPAAGAKLYA----PGP-VPDERFLALELGD 152 (171)
T ss_pred chhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecCc----ccccccCcEEcccccccc----CCC-CCCceEEEEEccC
Confidence 88999999999999999999999999998887664 344889999987654321 111 4556666666554
No 100
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=76.69 E-value=1.5 Score=35.82 Aligned_cols=36 Identities=31% Similarity=0.744 Sum_probs=27.2
Q ss_pred CCcccccCCCCCCccccccccccccccccCccccccccccccccc
Q 005906 402 SCCCRICGIGKRKFEEKTEHSVDDVLRICGQCEHNFHVGCIEKSR 446 (670)
Q Consensus 402 ~C~C~iCg~~~~~~~~~~~~~~~~~ll~CdqCer~YH~~Cl~~~~ 446 (670)
.+.|.+||+. -. ..+.+++|..|...||..|-...+
T Consensus 5 ~~~C~~Cg~~--~~-------~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 5 GCKCPVCGKK--FK-------DGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred CccChhhCCc--cc-------CCCCEEECCCCCCcccHHHHhhCC
Confidence 3578999988 21 123389999999999999986654
No 101
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=76.39 E-value=4 Score=41.05 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=50.5
Q ss_pred cEEEEEeecCEEeEee------------------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhh
Q 005906 562 FYTILLERNEEVISVR------------------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDT 617 (670)
Q Consensus 562 fYt~vLe~~~evVSvA------------------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~ 617 (670)
||.++|+-.++||+++ ..+|||.|+.+ |+..|..--..-+=.+.++-+++.+...
T Consensus 47 l~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~~~~N~~~~~~~~~~~~ 125 (181)
T PF06852_consen 47 LVLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDSVDDNSVAQGNVKMSNF 125 (181)
T ss_pred EEEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhccCCCceeeecCHHHHHH
Confidence 4556666666677655 66999999984 7777765433334467888899999999
Q ss_pred hhcccCceecCH
Q 005906 618 WTNKFGFSKMTE 629 (670)
Q Consensus 618 Wt~kFGF~~m~~ 629 (670)
|..-|||..+..
T Consensus 126 w~k~~G~~~~~h 137 (181)
T PF06852_consen 126 WHKMFGFDDYGH 137 (181)
T ss_pred HHHHhCCCCCcc
Confidence 999999998887
No 102
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=76.24 E-value=5.6 Score=34.66 Aligned_cols=58 Identities=24% Similarity=0.411 Sum_probs=38.5
Q ss_pred CEEeEee-eccccccchhHHHHHHHHHHHHHhCceeeeccCCc--chhhhhhcccCceecCH
Q 005906 571 EEVISVR-RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVP--GVVDTWTNKFGFSKMTE 629 (670)
Q Consensus 571 ~evVSvA-r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~--e~~~~Wt~kFGF~~m~~ 629 (670)
++|..+. ..+|||+|+.+.|+.+|-+.+..-|-.-++.-... .+..+-.+ .||+.+.+
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHHH-CT-EEEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH-cCCEEEEE
Confidence 3444444 88999999999999999888888777664433333 33445544 99988743
No 103
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=75.40 E-value=2.9 Score=41.90 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=41.8
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecCHHH
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTESE 631 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~~e 631 (670)
...+||||++++||...|.....-|...+.|..+.. ...++. .||..=++-+
T Consensus 92 ~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe~-lGYe~c~Pi~ 143 (225)
T KOG3397|consen 92 KKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYES-LGYEKCDPIV 143 (225)
T ss_pred ehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhhh-hcccccCcee
Confidence 558999999999999999999999999999987755 445554 7887655543
No 104
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=74.04 E-value=3 Score=35.95 Aligned_cols=40 Identities=23% Similarity=0.460 Sum_probs=30.8
Q ss_pred hhcCceeeeecCCC-----cccceeeCCCCCccccHHHHHHHHHhc
Q 005906 129 LSLGWSFWYTTKGN-----RRELRYTSPSGAVYISLRTACKACMDE 169 (670)
Q Consensus 129 ~~~gw~~~~~~~~~-----~~~~~y~~p~g~~~~s~~~a~~~~~~~ 169 (670)
|-.||+.+...|++ +-|..|++|.|+.+-| ......||.+
T Consensus 11 Lp~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS-~~eV~~yL~~ 55 (77)
T PF01429_consen 11 LPDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRS-KKEVVRYLKE 55 (77)
T ss_dssp STTT-EEEEEESSSSTTTTSEEEEEEETTSEEESS-HHHHHHHHTT
T ss_pred CCCCCEEEEEEecCCCcCCceEEEEECCCCCEEeC-HHHHHHHHHh
Confidence 56799999997774 5699999999999999 4455566654
No 105
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=72.40 E-value=0.87 Score=50.80 Aligned_cols=61 Identities=23% Similarity=0.637 Sum_probs=34.7
Q ss_pred CCCCccCcCCCC-------CCCCC-----CCCCCCCCC-------cccccCCCCCCcccccccccccc-ccccCcccccc
Q 005906 378 DCPSSFHKSCLV-------LNDLP-----KGNWFCPSC-------CCRICGIGKRKFEEKTEHSVDDV-LRICGQCEHNF 437 (670)
Q Consensus 378 ~Cp~afH~~Cl~-------l~~~p-----~g~W~C~~C-------~C~iCg~~~~~~~~~~~~~~~~~-ll~CdqCer~Y 437 (670)
.|.++||..|.. |..+| +..-||..| +|.+|++. -+... +.+++ -++| =+|.|
T Consensus 351 A~GkayHp~CF~Cv~C~r~ldgipFtvd~~n~v~Cv~dfh~kfAPrCs~C~~P--I~P~~---G~~etvRvva--mdr~f 423 (468)
T KOG1701|consen 351 ALGKAYHPGCFTCVVCARCLDGIPFTVDSQNNVYCVPDFHKKFAPRCSVCGNP--ILPRD---GKDETVRVVA--MDRDF 423 (468)
T ss_pred hcccccCCCceEEEEeccccCCccccccCCCceeeehhhhhhcCcchhhccCC--ccCCC---CCcceEEEEE--ccccc
Confidence 466778877654 22222 345677766 49999988 32221 12221 1222 36899
Q ss_pred cccccccc
Q 005906 438 HVGCIEKS 445 (670)
Q Consensus 438 H~~Cl~~~ 445 (670)
|+.|.+-.
T Consensus 424 Hv~CY~CE 431 (468)
T KOG1701|consen 424 HVNCYKCE 431 (468)
T ss_pred cccceehh
Confidence 99997653
No 106
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=67.63 E-value=2.8 Score=34.22 Aligned_cols=28 Identities=29% Similarity=0.997 Sum_probs=24.7
Q ss_pred cccccccC----CCceEEecCCCCccCcCCCC
Q 005906 362 EICSICQY----GGELVLCDDCPSSFHKSCLV 389 (670)
Q Consensus 362 d~C~vC~d----gG~Ll~Cd~Cp~afH~~Cl~ 389 (670)
..|.+|++ +++.+.|..|...||..|..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 36999995 68899999999999999984
No 107
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=64.94 E-value=7.9 Score=33.66 Aligned_cols=40 Identities=20% Similarity=0.456 Sum_probs=32.4
Q ss_pred hhcCceeeeecCCC----cccceeeCCCCCccccHHHHHHHHHhc
Q 005906 129 LSLGWSFWYTTKGN----RRELRYTSPSGAVYISLRTACKACMDE 169 (670)
Q Consensus 129 ~~~gw~~~~~~~~~----~~~~~y~~p~g~~~~s~~~a~~~~~~~ 169 (670)
|-.||+-+..+|++ +-|.-|++|.|+-+-| ......||++
T Consensus 7 lp~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS-~~ev~~yL~~ 50 (77)
T cd01396 7 LPPGWKRELVPRKSGSAGKFDVYYISPTGKKFRS-KVELARYLEK 50 (77)
T ss_pred CCCCCEEEEEEecCCCCCcceEEEECCCCCEEEC-HHHHHHHHHh
Confidence 46799999999987 5699999999999999 4455666655
No 108
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=63.81 E-value=1.4 Score=54.12 Aligned_cols=48 Identities=21% Similarity=0.213 Sum_probs=41.8
Q ss_pred CCCCccccccccCCCceEEecC-CCCccCc-CCCC---C-CCCCCCCCCCCCCc
Q 005906 357 EKQNDEICSICQYGGELVLCDD-CPSSFHK-SCLV---L-NDLPKGNWFCPSCC 404 (670)
Q Consensus 357 ~~~ndd~C~vC~dgG~Ll~Cd~-Cp~afH~-~Cl~---l-~~~p~g~W~C~~C~ 404 (670)
..-+.+.|.||+..+.+++|++ ||..||. .|++ . ..++++.|+|+.|.
T Consensus 424 ywfi~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~ 477 (1414)
T KOG1473|consen 424 YWFISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEI 477 (1414)
T ss_pred hhceeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHH
Confidence 4456678999999999999997 9999998 9999 2 36899999999985
No 109
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=62.63 E-value=7.1 Score=31.19 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=32.0
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCc
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGF 624 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF 624 (670)
...||++|+++.|+..++......|+. ....+...|.. +||
T Consensus 90 ~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~~-~~~ 130 (156)
T COG0454 90 LPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYEK-NGF 130 (156)
T ss_pred cchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHHh-cCC
Confidence 899999999999999999999988776 33344444444 666
No 110
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=62.14 E-value=13 Score=35.50 Aligned_cols=66 Identities=20% Similarity=0.305 Sum_probs=41.4
Q ss_pred ccccEEEEEeecCEEeEee----------------eccccccchhHHHHHHHHHHHHHhCceeeeccCC------cchhh
Q 005906 559 FQGFYTILLERNEEVISVR----------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAV------PGVVD 616 (670)
Q Consensus 559 f~GfYt~vLe~~~evVSvA----------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~------~e~~~ 616 (670)
.+-+|+| .+||.+++|+ |..-||.|.+..|++.+.+.+ =+|.+..|.+. ..+..
T Consensus 37 ~~~l~aA--rFNdRlLgAv~v~~~~~~~~L~~l~VRevTRrRGVG~yLlee~~rq~--p~i~~w~l~~~~~~~~~~~~~~ 112 (128)
T PF12568_consen 37 GHRLFAA--RFNDRLLGAVKVTISGQQAELSDLCVREVTRRRGVGLYLLEEVLRQL--PDIKHWWLADEGVEPQDRAVMA 112 (128)
T ss_dssp SEEEEEE--EETTEEEEEEEEEEETTEEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHH
T ss_pred CCeEEEE--EechheeeeEEEEEcCcceEEeeEEEeeccccccHHHHHHHHHHHHC--CCCcEEEEecCCCcccchHHHH
Confidence 3445655 6889998887 889999999999999999987 34444444333 24455
Q ss_pred hhhcccCceecC
Q 005906 617 TWTNKFGFSKMT 628 (670)
Q Consensus 617 ~Wt~kFGF~~m~ 628 (670)
.-...+||+.-+
T Consensus 113 ~Fm~a~GF~~~~ 124 (128)
T PF12568_consen 113 AFMQACGFSAQS 124 (128)
T ss_dssp HHHHHHT-EE-S
T ss_pred HHHHHcCccccC
Confidence 666677776543
No 111
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=59.97 E-value=5.4 Score=40.58 Aligned_cols=32 Identities=28% Similarity=0.627 Sum_probs=24.4
Q ss_pred ccccccccCccccccccccccccccccccCCCCCCcccCCcchhhh
Q 005906 423 VDDVLRICGQCEHNFHVGCIEKSRAINLNNCSQNKWFCSDGCEVIS 468 (670)
Q Consensus 423 ~~~~ll~CdqCer~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~~I~ 468 (670)
+.+....|..|..-||..|.... -||+ |..+.
T Consensus 168 ~~~~~~~C~~C~~v~H~~C~~~~-------------~Cpk-C~R~~ 199 (202)
T PF13901_consen 168 QIDTTVRCPKCKSVFHKSCFRKK-------------SCPK-CARRQ 199 (202)
T ss_pred CCCCeeeCCcCccccchhhcCCC-------------CCCC-cHhHh
Confidence 34468999999999999998641 2777 87664
No 112
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=56.32 E-value=4.2 Score=43.62 Aligned_cols=30 Identities=30% Similarity=0.588 Sum_probs=25.7
Q ss_pred eecCCCCCeeeccccccccC-CcCCCCCceE
Q 005906 293 IKCDCCSKVFTLSGFEAHAG-SQKHRPTANI 322 (670)
Q Consensus 293 I~C~CC~k~fSpS~FE~HAG-ss~~rP~~nI 322 (670)
|.|.|=+.-|||.+|..||| ...-.|.++|
T Consensus 253 i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 253 IVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 89999999999999999999 4555677776
No 113
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=55.92 E-value=5.9 Score=39.43 Aligned_cols=24 Identities=21% Similarity=0.587 Sum_probs=21.0
Q ss_pred ccccccccCccccccccccccccc
Q 005906 423 VDDVLRICGQCEHNFHVGCIEKSR 446 (670)
Q Consensus 423 ~~~~ll~CdqCer~YH~~Cl~~~~ 446 (670)
..+.|+.|.-|..+||..||.+..
T Consensus 13 ~kG~Lv~CQGCs~sYHk~CLG~Rs 36 (175)
T PF15446_consen 13 NKGPLVYCQGCSSSYHKACLGPRS 36 (175)
T ss_pred cCCCeEEcCccChHHHhhhcCCcc
Confidence 345699999999999999998875
No 114
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=54.85 E-value=5.8 Score=35.90 Aligned_cols=29 Identities=38% Similarity=0.959 Sum_probs=25.3
Q ss_pred ccccccccC-CCceEEecC--CCCccCcCCCC
Q 005906 361 DEICSICQY-GGELVLCDD--CPSSFHKSCLV 389 (670)
Q Consensus 361 dd~C~vC~d-gG~Ll~Cd~--Cp~afH~~Cl~ 389 (670)
...|.+|+. +|-.+.|.. |..+||+.|..
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 457999997 588999997 99999999975
No 115
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=52.58 E-value=20 Score=29.56 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=30.6
Q ss_pred hcCceeeeecCCC----cccceeeCCCCCccccHHHHHHHHHhc
Q 005906 130 SLGWSFWYTTKGN----RRELRYTSPSGAVYISLRTACKACMDE 169 (670)
Q Consensus 130 ~~gw~~~~~~~~~----~~~~~y~~p~g~~~~s~~~a~~~~~~~ 169 (670)
-.||+-+...|++ +.|-.|++|.|+.+-|.. -...||.+
T Consensus 7 p~GW~R~~~~r~~g~~~k~dv~Y~sP~Gk~~Rs~~-ev~~yL~~ 49 (62)
T cd00122 7 PPGWKRELVIRKSGSAGKGDVYYYSPCGKKLRSKP-EVARYLEK 49 (62)
T ss_pred CCCeEEEEEEcCCCCCCcceEEEECCCCceecCHH-HHHHHHHh
Confidence 5799999988876 569999999999888844 44555554
No 116
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=52.25 E-value=18 Score=31.49 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=30.9
Q ss_pred hhcCceeeeecCCC-----cccceeeCCCCCccccHHHHHHHHHhc
Q 005906 129 LSLGWSFWYTTKGN-----RRELRYTSPSGAVYISLRTACKACMDE 169 (670)
Q Consensus 129 ~~~gw~~~~~~~~~-----~~~~~y~~p~g~~~~s~~~a~~~~~~~ 169 (670)
+-.||.=+...|+. +.|..|+||.|+.+-| ..-...||.+
T Consensus 8 lp~GW~R~~~~r~~g~~~~~~dV~Y~sP~GkklRs-~~ev~~YL~~ 52 (77)
T smart00391 8 LPCGWRRETKQRKSGRSAGKFDVYYISPCGKKLRS-KSELARYLHK 52 (77)
T ss_pred CCCCcEEEEEEecCCCCCCcccEEEECCCCCeeeC-HHHHHHHHHh
Confidence 45799988877763 6799999999999988 4455666654
No 117
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=52.14 E-value=20 Score=35.64 Aligned_cols=54 Identities=26% Similarity=0.354 Sum_probs=43.2
Q ss_pred EEeEee-eccccccchhHHHHHHHHHHHHHhC---ceeeeccCCcchhhhhhcccCcee
Q 005906 572 EVISVR-RMKHRRLGMCRVLMNELEKLLIELG---VERLVLPAVPGVVDTWTNKFGFSK 626 (670)
Q Consensus 572 evVSvA-r~~~RrqGmcr~L~~~IE~lL~~L~---Ve~LVLPA~~e~~~~Wt~kFGF~~ 626 (670)
.|-+++ ...|||+|+...||+.||.+...-+ |..+|.-.-.-|.++.++ ||+++
T Consensus 71 HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkk-LGY~~ 128 (173)
T KOG3234|consen 71 HVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKK-LGYSV 128 (173)
T ss_pred EEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHh-cCceE
Confidence 333444 5689999999999999999887664 667888888888899887 88865
No 118
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=51.96 E-value=6.4 Score=36.19 Aligned_cols=34 Identities=35% Similarity=0.925 Sum_probs=22.7
Q ss_pred CCCCccCcCCCC------C-CCCCCCCCCCCCCc----ccccCCC
Q 005906 378 DCPSSFHKSCLV------L-NDLPKGNWFCPSCC----CRICGIG 411 (670)
Q Consensus 378 ~Cp~afH~~Cl~------l-~~~p~g~W~C~~C~----C~iCg~~ 411 (670)
.|...|-..||. + +-..+++|.||.|+ |..|...
T Consensus 35 ~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiCnCs~Crrk 79 (105)
T PF10497_consen 35 GCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGICNCSFCRRK 79 (105)
T ss_pred cCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCeeCCHhhhcc
Confidence 336667777765 1 22356789999884 7788665
No 119
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=51.38 E-value=8.9 Score=33.27 Aligned_cols=27 Identities=41% Similarity=0.928 Sum_probs=24.4
Q ss_pred ccccccCC-CceEEec--CCCCccCcCCCC
Q 005906 363 ICSICQYG-GELVLCD--DCPSSFHKSCLV 389 (670)
Q Consensus 363 ~C~vC~dg-G~Ll~Cd--~Cp~afH~~Cl~ 389 (670)
.|.+|+.. |-.+-|. .|...||..|..
T Consensus 38 ~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 38 KCSICKKKGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred CCcCCCCCCCeEEEEeCCCCCcEEChHHHc
Confidence 69999998 9899998 599999999986
No 120
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=50.99 E-value=22 Score=43.11 Aligned_cols=95 Identities=17% Similarity=0.229 Sum_probs=67.1
Q ss_pred cchhhhhHHHHHhccCCcccccccccEEEEEeecCEEeEee-eccccccchhHHHHHHHHHHHHHhCceeeec--cCCcc
Q 005906 537 LTERDLVEDVIFNRRSDLNRLNFQGFYTILLERNEEVISVR-RMKHRRLGMCRVLMNELEKLLIELGVERLVL--PAVPG 613 (670)
Q Consensus 537 ~Tg~DlI~~mvy~r~S~~~r~df~GfYt~vLe~~~evVSvA-r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVL--PA~~e 613 (670)
+-+-||||+++-.- +...+|.. .++-.||-+| ..++|++|++++|+..|++... -+|.-|.. =+.++
T Consensus 507 r~~GnlIp~~l~~~---~~~~~fa~------l~G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~ 576 (758)
T COG1444 507 RPRGNLIPDLLAKH---HRDPEFAK------LVGWRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEE 576 (758)
T ss_pred CCCCcccHHHHHHh---hcchhhcc------cceeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHH
Confidence 44568999998664 34556665 3456888899 9999999999999999998874 22333322 26789
Q ss_pred hhhhhhcccCceecCHHHHh-hhc-cceeee
Q 005906 614 VVDTWTNKFGFSKMTESERL-QYS-DYTFLD 642 (670)
Q Consensus 614 ~~~~Wt~kFGF~~m~~~e~~-~~~-~~~l~~ 642 (670)
+...|.+ =||.++=-++.. +.. .|+.++
T Consensus 577 L~rFW~r-nGF~pVhls~~rn~~SGeys~i~ 606 (758)
T COG1444 577 LLRFWLR-NGFVPVHLSPTRNASSGEYTAIV 606 (758)
T ss_pred HHHHHHH-cCeEEEEecCccCcCCCceeEEE
Confidence 9999998 899998665433 333 355443
No 121
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=49.08 E-value=7.3 Score=33.82 Aligned_cols=38 Identities=24% Similarity=0.599 Sum_probs=24.5
Q ss_pred cccccCc--ccccccccccccccccc-cc-CCCCCCcccCCc
Q 005906 426 VLRICGQ--CEHNFHVGCIEKSRAIN-LN-NCSQNKWFCSDG 463 (670)
Q Consensus 426 ~ll~Cdq--Cer~YH~~Cl~~~~~~~-l~-~~p~~~WfC~~~ 463 (670)
..+.|.. |.+.||+.|....+..- .. .......||+++
T Consensus 48 a~i~C~~~~C~~~fH~~CA~~~~~~~~~~~~~~~~~~~C~~H 89 (90)
T PF13771_consen 48 ACIGCSHPGCSRSFHVPCARKAGCFIEFDEDNGKFRIFCPKH 89 (90)
T ss_pred eEEEEeCCCCCcEEChHHHccCCeEEEEccCCCceEEEChhc
Confidence 3778876 99999999998865321 11 112346677753
No 122
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=47.69 E-value=14 Score=36.55 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=43.9
Q ss_pred EeEee-eccccccchhHHHHHH-HHHHHHHhCceeeeccCCcchhhhhhcccCceecCH
Q 005906 573 VISVR-RMKHRRLGMCRVLMNE-LEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTE 629 (670)
Q Consensus 573 vVSvA-r~~~RrqGmcr~L~~~-IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~ 629 (670)
|=|+| ...||.||+...|+.. |..+=..==|.+.||=+-+-+++.+.+ |||..+-+
T Consensus 104 iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr-~gFk~vgp 161 (190)
T KOG4144|consen 104 IHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYER-FGFKAVGP 161 (190)
T ss_pred EEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHh-cCceeecc
Confidence 44566 8899999999999765 444433444778899898999998877 99999987
No 123
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=47.39 E-value=13 Score=40.41 Aligned_cols=24 Identities=29% Similarity=0.678 Sum_probs=20.2
Q ss_pred ccccccccCccccccc-cccccccc
Q 005906 423 VDDVLRICGQCEHNFH-VGCIEKSR 446 (670)
Q Consensus 423 ~~~~ll~CdqCer~YH-~~Cl~~~~ 446 (670)
.++.|++|-.|+-||| .+|++...
T Consensus 144 ~e~~m~QC~iCEDWFHce~c~~~~~ 168 (345)
T KOG2752|consen 144 EEGEMLQCVICEDWFHCEGCMQAKT 168 (345)
T ss_pred ccceeeeEEeccchhcccccCcccc
Confidence 3567999999999999 89987753
No 124
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=47.22 E-value=8 Score=34.41 Aligned_cols=31 Identities=32% Similarity=0.730 Sum_probs=19.2
Q ss_pred eEEecCCCCccCcCCCC--CCCCCCCCCCCCCCcc
Q 005906 373 LVLCDDCPSSFHKSCLV--LNDLPKGNWFCPSCCC 405 (670)
Q Consensus 373 Ll~Cd~Cp~afH~~Cl~--l~~~p~g~W~C~~C~C 405 (670)
++.+ .|...||..|+. +.+- ...=.||.|+-
T Consensus 47 lv~g-~C~H~FH~hCI~kWl~~~-~~~~~CPmCR~ 79 (85)
T PF12861_consen 47 LVWG-KCSHNFHMHCILKWLSTQ-SSKGQCPMCRQ 79 (85)
T ss_pred eeec-cCccHHHHHHHHHHHccc-cCCCCCCCcCC
Confidence 4443 499999999987 4432 22226776653
No 125
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=45.65 E-value=8.3 Score=45.20 Aligned_cols=35 Identities=26% Similarity=0.597 Sum_probs=26.0
Q ss_pred cccccccCccccccccccccccccccccCCCCCCcccCCcchhhhHH
Q 005906 424 DDVLRICGQCEHNFHVGCIEKSRAINLNNCSQNKWFCSDGCEVISSC 470 (670)
Q Consensus 424 ~~~ll~CdqCer~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~~I~~~ 470 (670)
.++...|+.|...||..|+.-.. + . ||+ |..+.++
T Consensus 528 ~~~~~rC~~C~avfH~~C~~r~s-------~-~---CPr-C~R~q~r 562 (580)
T KOG1829|consen 528 TRNTRRCSTCLAVFHKKCLRRKS-------P-C---CPR-CERRQKR 562 (580)
T ss_pred cccceeHHHHHHHHHHHHHhccC-------C-C---CCc-hHHHHHH
Confidence 45578999999999999987632 1 1 777 8776543
No 126
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=44.73 E-value=7.5 Score=33.01 Aligned_cols=28 Identities=43% Similarity=0.886 Sum_probs=11.6
Q ss_pred cccccccC----CCc--eEEec--CCCCccCcCCCC
Q 005906 362 EICSICQY----GGE--LVLCD--DCPSSFHKSCLV 389 (670)
Q Consensus 362 d~C~vC~d----gG~--Ll~Cd--~Cp~afH~~Cl~ 389 (670)
..|.||-. .++ .+.|+ .|...||..||.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~ 38 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLS 38 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHH
Confidence 35888874 233 57888 899999999997
No 127
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=44.40 E-value=33 Score=34.19 Aligned_cols=61 Identities=20% Similarity=0.326 Sum_probs=46.0
Q ss_pred cCEEeEee-eccccccchhHHHHHHHHH-HHHHhCcee---eeccCCcchhhhhhcccCceecCHH
Q 005906 570 NEEVISVR-RMKHRRLGMCRVLMNELEK-LLIELGVER---LVLPAVPGVVDTWTNKFGFSKMTES 630 (670)
Q Consensus 570 ~~evVSvA-r~~~RrqGmcr~L~~~IE~-lL~~L~Ve~---LVLPA~~e~~~~Wt~kFGF~~m~~~ 630 (670)
.|.|-|+| ...|||.|..++||+.--+ ++...+-+- -|=-+-..++..+++..||...+-+
T Consensus 71 hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve 136 (193)
T KOG3235|consen 71 HGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVE 136 (193)
T ss_pred CCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeecc
Confidence 67899999 8899999999999986443 444444333 3444667789999999999987654
No 128
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=43.23 E-value=29 Score=36.97 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=21.1
Q ss_pred eecCEEeEee----------------eccccccchhHHHHHH
Q 005906 568 ERNEEVISVR----------------RMKHRRLGMCRVLMNE 593 (670)
Q Consensus 568 e~~~evVSvA----------------r~~~RrqGmcr~L~~~ 593 (670)
..+++|||.| ...|||||+.+++-+.
T Consensus 171 ~~~~~iVs~~~s~~~~~~~~EI~I~T~~~yR~kGLA~~~aa~ 212 (265)
T PF12746_consen 171 LHDGEIVSGCSSYFVYENGIEIDIETHPEYRGKGLATAVAAA 212 (265)
T ss_dssp EETTEEEEEEEEEEEETTEEEEEEEE-CCCTTSSHHHHHHHH
T ss_pred EECCEEEEEEEEEEEECCEEEEEEEECHHhhcCCHHHHHHHH
Confidence 3589999988 7799999999887654
No 129
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=42.44 E-value=4.1 Score=30.89 Aligned_cols=27 Identities=37% Similarity=0.866 Sum_probs=19.2
Q ss_pred cccccccCC---C-ceEEecCCCCccCcCCCC
Q 005906 362 EICSICQYG---G-ELVLCDDCPSSFHKSCLV 389 (670)
Q Consensus 362 d~C~vC~dg---G-~Ll~Cd~Cp~afH~~Cl~ 389 (670)
|.|.||.+. + ..+... |.-.||..|+.
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~ 31 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIK 31 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHH
Confidence 468888852 3 344444 99999999987
No 130
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=41.93 E-value=34 Score=27.02 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=22.2
Q ss_pred HHHHHHhhhceeEEeecCCCeeeeeCCCCC
Q 005906 33 NVRRHLKHLGWTIEYSSSKGVFRYTSPNGN 62 (670)
Q Consensus 33 ~~~~hl~~~gw~i~~~~~~~~~ry~~p~~~ 62 (670)
.|.+-|.++||+..-. .+..+.|+.|++.
T Consensus 3 el~k~L~~~G~~~~r~-~GSH~~~~~~~~~ 31 (56)
T PF07927_consen 3 ELIKLLEKAGFEEVRQ-KGSHHIFRHPGGR 31 (56)
T ss_dssp HHHHHHHHTT-EEEEE-ETTEEEEE-TTS-
T ss_pred HHHHHHHHCCCEEecC-CCCEEEEEeCCCC
Confidence 5789999999999944 6799999999875
No 131
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=40.77 E-value=34 Score=37.29 Aligned_cols=26 Identities=27% Similarity=0.815 Sum_probs=17.8
Q ss_pred CCccccccccC-------------CCceEEecCCCCccC
Q 005906 359 QNDEICSICQY-------------GGELVLCDDCPSSFH 384 (670)
Q Consensus 359 ~ndd~C~vC~d-------------gG~Ll~Cd~Cp~afH 384 (670)
.+...|.|||. |...+.|..|..-||
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~ 223 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWH 223 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccc
Confidence 45678999995 224777777766555
No 132
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=40.66 E-value=4.6 Score=45.31 Aligned_cols=70 Identities=26% Similarity=0.614 Sum_probs=45.9
Q ss_pred cccccccCC--CceEEecCCCCccCcCCCC-------CC----CCCCCCCCCCCC------cccccCCCCCCcccccccc
Q 005906 362 EICSICQYG--GELVLCDDCPSSFHKSCLV-------LN----DLPKGNWFCPSC------CCRICGIGKRKFEEKTEHS 422 (670)
Q Consensus 362 d~C~vC~dg--G~Ll~Cd~Cp~afH~~Cl~-------l~----~~p~g~W~C~~C------~C~iCg~~~~~~~~~~~~~ 422 (670)
.+|.-|+.+ |+-.-|..=.+-||..|.. |. -.-++.=+|..| .|..|++..
T Consensus 275 ~iC~~C~K~V~g~~~ac~Am~~~fHv~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlekC~~Cg~~I---------- 344 (468)
T KOG1701|consen 275 GICAFCHKTVSGQGLAVEAMDQLFHVQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEKCNKCGEPI---------- 344 (468)
T ss_pred hhhhhcCCcccCcchHHHHhhhhhcccceehHhhhhhhccccccccCCcccchHHHHHHHHHHhhhhhHH----------
Confidence 479999974 6666666667789988875 21 113556688887 388887771
Q ss_pred ccccccccCccccccccccccc
Q 005906 423 VDDVLRICGQCEHNFHVGCIEK 444 (670)
Q Consensus 423 ~~~~ll~CdqCer~YH~~Cl~~ 444 (670)
.| .|+ ..|+++||++|..-
T Consensus 345 ~d-~iL--rA~GkayHp~CF~C 363 (468)
T KOG1701|consen 345 MD-RIL--RALGKAYHPGCFTC 363 (468)
T ss_pred HH-HHH--HhcccccCCCceEE
Confidence 11 122 35788999999653
No 133
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=40.56 E-value=66 Score=29.98 Aligned_cols=56 Identities=20% Similarity=0.211 Sum_probs=43.2
Q ss_pred eccccccchhHHHHHHHHHH-HHHhCceeeeccCCcchhhhhh--cccCceecCHHHHh
Q 005906 578 RMKHRRLGMCRVLMNELEKL-LIELGVERLVLPAVPGVVDTWT--NKFGFSKMTESERL 633 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~l-L~~L~Ve~LVLPA~~e~~~~Wt--~kFGF~~m~~~e~~ 633 (670)
...|+|||+....+.++-.. ...+++.++++=..++-+..+. .+.||+.-......
T Consensus 104 ~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~eg~~~~~ 162 (187)
T COG1670 104 DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRLEGELRQH 162 (187)
T ss_pred ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChhhhhhhhc
Confidence 56899999998877776655 5559999999988888777775 48999877655443
No 134
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=40.08 E-value=22 Score=44.03 Aligned_cols=49 Identities=41% Similarity=0.985 Sum_probs=39.2
Q ss_pred CccccccccCCCc--eEEecCCCCccCcCCCC--CCCCCCCCCCCCCCccccc
Q 005906 360 NDEICSICQYGGE--LVLCDDCPSSFHKSCLV--LNDLPKGNWFCPSCCCRIC 408 (670)
Q Consensus 360 ndd~C~vC~dgG~--Ll~Cd~Cp~afH~~Cl~--l~~~p~g~W~C~~C~C~iC 408 (670)
....|..|..+.+ ++.|+.|...+|..|.. ++.+++|+|.|+.|...-|
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPE 206 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccccc
Confidence 3456888887653 34999999999999998 6788999999999876543
No 135
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=38.15 E-value=31 Score=29.68 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=28.6
Q ss_pred hhceeEEee--cCC-----CeeeeeCCCCCccchHHHHHHHhcC
Q 005906 40 HLGWTIEYS--SSK-----GVFRYTSPNGNPYLSLSQVCRELGD 76 (670)
Q Consensus 40 ~~gw~i~~~--~~~-----~~~ry~~p~~~~y~s~~~~~~~~~~ 76 (670)
--||+.|.. .++ .=--|.||.|+.+-|..+|.+-|..
T Consensus 12 p~GW~re~~~R~~g~~~~~~dv~Y~sP~Gk~~RS~~eV~~yL~~ 55 (77)
T PF01429_consen 12 PDGWKREVVVRKSGSSAGKKDVYYYSPCGKRFRSKKEVVRYLKE 55 (77)
T ss_dssp TTT-EEEEEESSSSTTTTSEEEEEEETTSEEESSHHHHHHHHTT
T ss_pred CCCCEEEEEEecCCCcCCceEEEEECCCCCEEeCHHHHHHHHHh
Confidence 359998877 322 3346999999999999999999984
No 136
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=37.86 E-value=18 Score=39.87 Aligned_cols=45 Identities=20% Similarity=0.533 Sum_probs=34.9
Q ss_pred cccccCcccccccccc--ccccccccccCCCCCCcccCCcchhhhHHHHhh
Q 005906 426 VLRICGQCEHNFHVGC--IEKSRAINLNNCSQNKWFCSDGCEVISSCLHEI 474 (670)
Q Consensus 426 ~ll~CdqCer~YH~~C--l~~~~~~~l~~~p~~~WfC~~~C~~I~~~Lq~l 474 (670)
.++.|+.|+.+||..| .+.. .....+...|+| ..|+....+++.-
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~---~~e~p~~~~~~c-~~c~~~~~~~~~~ 120 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTA---EKEAPKEDPKVC-DECKEAQDGMSES 120 (345)
T ss_pred hhhccccccccccccccccCch---hhcCCccccccc-cccchhhhhhhhh
Confidence 4889999999999999 6553 245556778999 6699887776654
No 137
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=36.66 E-value=14 Score=25.34 Aligned_cols=20 Identities=25% Similarity=0.665 Sum_probs=17.7
Q ss_pred eecCCCCCeeeccccccccC
Q 005906 293 IKCDCCSKVFTLSGFEAHAG 312 (670)
Q Consensus 293 I~C~CC~k~fSpS~FE~HAG 312 (670)
+.|..|++.|.+..++.|..
T Consensus 3 ~~C~~CgR~F~~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPICGRKFNPDRLEKHEK 22 (25)
T ss_pred CcCCCCCCEECHHHHHHHHH
Confidence 57999999999999999953
No 138
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=35.98 E-value=20 Score=30.41 Aligned_cols=35 Identities=23% Similarity=0.543 Sum_probs=13.2
Q ss_pred cccccCCCCCCccccccccccccccccC--cccccccccccccc
Q 005906 404 CCRICGIGKRKFEEKTEHSVDDVLRICG--QCEHNFHVGCIEKS 445 (670)
Q Consensus 404 ~C~iCg~~~~~~~~~~~~~~~~~ll~Cd--qCer~YH~~Cl~~~ 445 (670)
.|.||... ..+ .+....+.|+ .|...||..||...
T Consensus 4 ~C~IC~~~--~~~-----~~~~p~~~C~n~~C~~~fH~~CL~~w 40 (70)
T PF11793_consen 4 ECGICYSY--RLD-----DGEIPDVVCPNPSCGKKFHLLCLSEW 40 (70)
T ss_dssp S-SSS--S--S-T-----T-----B--S-TT----B-SGGGHHH
T ss_pred CCCcCCcE--ecC-----CCCcCceEcCCcccCCHHHHHHHHHH
Confidence 37777665 211 1123468898 99999999999774
No 139
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=35.70 E-value=40 Score=30.35 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.7
Q ss_pred eccccccchhHHHHHHHHHHHHHhCce
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVE 604 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve 604 (670)
=.+|||||+.+.++...-+.|..+|.-
T Consensus 28 lPeyR~~G~~~~v~~~~~~~L~~~g~P 54 (89)
T PF08444_consen 28 LPEYRGQGLMSQVMYHLAQYLHKLGFP 54 (89)
T ss_pred CHhHhcCCHHHHHHHHHHHHHHHCCCC
Confidence 569999999999999999999999964
No 140
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=35.03 E-value=29 Score=35.39 Aligned_cols=28 Identities=46% Similarity=0.944 Sum_probs=23.5
Q ss_pred cccccccCC--------CceEEecCCCCccCcCCCC
Q 005906 362 EICSICQYG--------GELVLCDDCPSSFHKSCLV 389 (670)
Q Consensus 362 d~C~vC~dg--------G~Ll~Cd~Cp~afH~~Cl~ 389 (670)
.+|.+|.+. .....|..|.+.||..|..
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC
Confidence 478999863 3578999999999999997
No 141
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=33.01 E-value=18 Score=25.54 Aligned_cols=27 Identities=26% Similarity=0.768 Sum_probs=11.2
Q ss_pred ccccCCCCCCccccccccccccccccCcccccccccc
Q 005906 405 CRICGIGKRKFEEKTEHSVDDVLRICGQCEHNFHVGC 441 (670)
Q Consensus 405 C~iCg~~~~~~~~~~~~~~~~~ll~CdqCer~YH~~C 441 (670)
|..|++. ...+....|.+|+-..|..|
T Consensus 3 C~~C~~~----------~~~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 3 CDACGKP----------IDGGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp -TTTS--------------S--EEE-TTT-----HHH
T ss_pred CCcCCCc----------CCCCceEECccCCCccChhc
Confidence 6677766 11134789999999999988
No 142
>PF00641 zf-RanBP: Zn-finger in Ran binding protein and others; InterPro: IPR001876 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in RanBP2 proteins. Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran binding protein 2 (RanBP2) is a 358kDa nucleoporin located on the cytoplasmic side of the nuclear pore complex which plays a role in nuclear protein import []. RanBP2 contains multiple zinc fingers which mediate binding to RanGDP []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9G_A 2EBR_A 2WX0_C 2WX1_C 2WWZ_C 3GJ6_B 2LK0_A 2LK1_A 3GJ5_B 3GJ8_B ....
Probab=32.71 E-value=17 Score=25.64 Aligned_cols=10 Identities=60% Similarity=1.770 Sum_probs=8.0
Q ss_pred CCCCCCCCCc
Q 005906 395 KGNWFCPSCC 404 (670)
Q Consensus 395 ~g~W~C~~C~ 404 (670)
+|+|.|+.|.
T Consensus 2 ~g~W~C~~C~ 11 (30)
T PF00641_consen 2 EGDWKCPSCT 11 (30)
T ss_dssp SSSEEETTTT
T ss_pred CcCccCCCCc
Confidence 5789998874
No 143
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD). The MBD, consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1.
Probab=32.18 E-value=54 Score=28.49 Aligned_cols=36 Identities=33% Similarity=0.569 Sum_probs=27.7
Q ss_pred hceeEEeecCC----Ce--eeeeCCCCCccchHHHHHHHhcC
Q 005906 41 LGWTIEYSSSK----GV--FRYTSPNGNPYLSLSQVCRELGD 76 (670)
Q Consensus 41 ~gw~i~~~~~~----~~--~ry~~p~~~~y~s~~~~~~~~~~ 76 (670)
-||+-|...-. .+ --|.||.|+..-|..||.+-|+.
T Consensus 9 ~GW~r~~~~R~~gs~~k~DvyY~sP~Gkk~RS~~ev~~yL~~ 50 (77)
T cd01396 9 PGWKRELVPRKSGSAGKFDVYYISPTGKKFRSKVELARYLEK 50 (77)
T ss_pred CCCEEEEEEecCCCCCcceEEEECCCCCEEECHHHHHHHHHh
Confidence 48977654332 33 33999999999999999999984
No 144
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=31.57 E-value=88 Score=34.16 Aligned_cols=69 Identities=25% Similarity=0.417 Sum_probs=58.6
Q ss_pred cEEEEEeecCEEeEee------------eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecCH
Q 005906 562 FYTILLERNEEVISVR------------RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTE 629 (670)
Q Consensus 562 fYt~vLe~~~evVSvA------------r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~ 629 (670)
.++++-..+++||+.+ +..+||-|.--.|++++=.+.-.+|--+|.|=.-|+-...... .||..+..
T Consensus 37 ~~v~~~~~~~~iiacGsiaGnvikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~-~GF~~i~~ 115 (352)
T COG3053 37 YFVAIYRDNEEIIACGSIAGNVIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQ-CGFSEIAS 115 (352)
T ss_pred EEEEEEcCCCcEEEecccccceeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHh-CCceEeec
Confidence 3456666668888654 8899999999999999999999999999999988888887776 99999887
Q ss_pred HH
Q 005906 630 SE 631 (670)
Q Consensus 630 ~e 631 (670)
-+
T Consensus 116 ~~ 117 (352)
T COG3053 116 AE 117 (352)
T ss_pred cC
Confidence 55
No 145
>smart00547 ZnF_RBZ Zinc finger domain. Zinc finger domain in Ran-binding proteins (RanBPs), and other proteins. In RanBPs, this domain binds RanGDP.
Probab=30.72 E-value=32 Score=23.18 Aligned_cols=9 Identities=56% Similarity=1.859 Sum_probs=7.0
Q ss_pred CCCCCCCCc
Q 005906 396 GNWFCPSCC 404 (670)
Q Consensus 396 g~W~C~~C~ 404 (670)
|+|.|+.|.
T Consensus 1 g~W~C~~C~ 9 (26)
T smart00547 1 GDWECPACT 9 (26)
T ss_pred CcccCCCCC
Confidence 579998874
No 146
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=27.49 E-value=58 Score=33.12 Aligned_cols=52 Identities=23% Similarity=0.201 Sum_probs=44.9
Q ss_pred eccccccchhHHHHHHHHHHHHHhCcee---eeccCCcchhhhhhcccCceecCH
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVER---LVLPAVPGVVDTWTNKFGFSKMTE 629 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~---LVLPA~~e~~~~Wt~kFGF~~m~~ 629 (670)
-..||..|.+..|++.+.+.....++-+ |-++|+.+..--|=.++||+.+..
T Consensus 98 l~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~ 152 (187)
T KOG3138|consen 98 LPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVER 152 (187)
T ss_pred cHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeec
Confidence 6789999999999999999999888433 667888888888999999998754
No 147
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.89 E-value=50 Score=36.61 Aligned_cols=43 Identities=33% Similarity=0.755 Sum_probs=28.1
Q ss_pred cccccccC---CCceEEecCCCCccCcCCCC--CCCCCCCCCCCCCCcccc
Q 005906 362 EICSICQY---GGELVLCDDCPSSFHKSCLV--LNDLPKGNWFCPSCCCRI 407 (670)
Q Consensus 362 d~C~vC~d---gG~Ll~Cd~Cp~afH~~Cl~--l~~~p~g~W~C~~C~C~i 407 (670)
+.|.||-+ .|+.+.==-|.-.||..|++ +..- .=+||-|.+.+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di 277 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDI 277 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcC
Confidence 68999986 36644334577899999998 3211 12477666643
No 148
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=26.87 E-value=32 Score=36.77 Aligned_cols=26 Identities=19% Similarity=0.637 Sum_probs=14.6
Q ss_pred CCccccccccC----------C--C-ceEEecCCCCccC
Q 005906 359 QNDEICSICQY----------G--G-ELVLCDDCPSSFH 384 (670)
Q Consensus 359 ~ndd~C~vC~d----------g--G-~Ll~Cd~Cp~afH 384 (670)
.+...|.|||. + | ..+.|..|...||
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~ 208 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWR 208 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeee
Confidence 33468999994 1 3 5899999988777
No 149
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=26.58 E-value=2.2e+02 Score=27.39 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=47.3
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecCHHHHhhhcc---ceeeee
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMTESERLQYSD---YTFLDF 643 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~~~e~~~~~~---~~l~~F 643 (670)
-..||+.||+|.-...|=..-. =.-+-.+||--..|.+-|..-.-=..+..++++.... +.+..|
T Consensus 74 i~k~~~~GvGR~aaK~If~~~~-g~w~Va~i~EN~PA~~fwK~~~~t~~i~~E~r~d~~~d~iy~i~TF 141 (143)
T COG5628 74 VRKHRRRGVGRAAAKAIFGSAW-GVWQVATVRENTPARAFWKRVAETYPVVEEDRQDARWDGIYAVLTF 141 (143)
T ss_pred eehhhccchhHHHHHHHHHHhh-ceEEEEEeccCChhHHHHHhhhcccccchhhhhcccCCCceEEEEE
Confidence 4479999999998888865421 2245578999999999999865556777788877663 345555
No 150
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=25.87 E-value=66 Score=37.52 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=37.0
Q ss_pred CCCccccccccCCCceEEecCCCCccCcCCCCCC-CCC--CCCCCCCCCc
Q 005906 358 KQNDEICSICQYGGELVLCDDCPSSFHKSCLVLN-DLP--KGNWFCPSCC 404 (670)
Q Consensus 358 ~~ndd~C~vC~dgG~Ll~Cd~Cp~afH~~Cl~l~-~~p--~g~W~C~~C~ 404 (670)
...+.+|.-|.-.|.-+.|+.|-+.||..|.... ..+ ...|-|+.|.
T Consensus 57 ~N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~ 106 (588)
T KOG3612|consen 57 SNIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPY 106 (588)
T ss_pred cCCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccc
Confidence 3445689999999999999999999999999843 233 2358888773
No 151
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=25.70 E-value=76 Score=32.52 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=36.7
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceee---eccCCcchhhhhhcccCceecCH
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERL---VLPAVPGVVDTWTNKFGFSKMTE 629 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~L---VLPA~~e~~~~Wt~kFGF~~m~~ 629 (670)
-..|||.|.++.|++.+|.+-.+-+.+.. |.-+-.-+...... +||-+-+.
T Consensus 129 ~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~~-~gf~~~~~ 182 (202)
T KOG2488|consen 129 ASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYHR-LGFVVDEE 182 (202)
T ss_pred hhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHHH-cCcccCCC
Confidence 45799999999999999998777766644 44444445555554 88876554
No 152
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=25.55 E-value=25 Score=32.34 Aligned_cols=37 Identities=27% Similarity=0.728 Sum_probs=23.3
Q ss_pred cCccccccccccccccccccc-cCCCCCCcccCCcchhh
Q 005906 430 CGQCEHNFHVGCIEKSRAINL-NNCSQNKWFCSDGCEVI 467 (670)
Q Consensus 430 CdqCer~YH~~Cl~~~~~~~l-~~~p~~~WfC~~~C~~I 467 (670)
|..|...|-..||...-...+ +.....+|.||. |..|
T Consensus 33 C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~-Crgi 70 (105)
T PF10497_consen 33 CRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPK-CRGI 70 (105)
T ss_pred CccCcceehHhHHHHHHhhhHHHHhcCCceECCC-CCCe
Confidence 344478888888876543222 223457899998 7664
No 153
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=24.88 E-value=90 Score=34.06 Aligned_cols=26 Identities=23% Similarity=0.745 Sum_probs=18.0
Q ss_pred CCccccccccC--------------CCceEEecCCCCccC
Q 005906 359 QNDEICSICQY--------------GGELVLCDDCPSSFH 384 (670)
Q Consensus 359 ~ndd~C~vC~d--------------gG~Ll~Cd~Cp~afH 384 (670)
.+...|.|||. |...+.|..|..-||
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~ 221 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWH 221 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccc
Confidence 44558999994 123778888877665
No 154
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=23.84 E-value=71 Score=36.80 Aligned_cols=49 Identities=22% Similarity=0.369 Sum_probs=37.1
Q ss_pred ccccccchhHHHHHHHHHHHHHhCceeeeccCCcchhhhhhcccCceecC
Q 005906 579 MKHRRLGMCRVLMNELEKLLIELGVERLVLPAVPGVVDTWTNKFGFSKMT 628 (670)
Q Consensus 579 ~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~~e~~~~Wt~kFGF~~m~ 628 (670)
..+|.|||+++||..-|++-+.-+-+++.+=+.=.+.+-.. ||||...-
T Consensus 460 ~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~-k~GY~~~g 508 (515)
T COG1243 460 DEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYR-KLGYELDG 508 (515)
T ss_pred chhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHH-HhCccccC
Confidence 57899999999999999999988877754444445555554 79987643
No 155
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=23.73 E-value=35 Score=38.83 Aligned_cols=29 Identities=34% Similarity=0.607 Sum_probs=21.6
Q ss_pred ccccccccC----CCceEEecCCCCccCcCCCC
Q 005906 361 DEICSICQY----GGELVLCDDCPSSFHKSCLV 389 (670)
Q Consensus 361 dd~C~vC~d----gG~Ll~Cd~Cp~afH~~Cl~ 389 (670)
-..|.||-. .-..+.-.-|.-+||-.|+.
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~ 207 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLM 207 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHh
Confidence 357999973 22356667789999999985
No 156
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=23.20 E-value=57 Score=37.73 Aligned_cols=9 Identities=11% Similarity=0.217 Sum_probs=4.9
Q ss_pred hhhHHHHhh
Q 005906 466 VISSCLHEI 474 (670)
Q Consensus 466 ~I~~~Lq~l 474 (670)
.|+..|+++
T Consensus 108 ~l~~QL~kl 116 (483)
T PF05502_consen 108 GLRAQLSKL 116 (483)
T ss_pred hHHHHHHhh
Confidence 355556655
No 157
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=23.09 E-value=38 Score=40.18 Aligned_cols=78 Identities=21% Similarity=0.437 Sum_probs=47.5
Q ss_pred ccccccccCC-CceEEecCCCCccCcCCCCC--C-------------CCCCCCCCCCCCc---ccccCCCCCCccccccc
Q 005906 361 DEICSICQYG-GELVLCDDCPSSFHKSCLVL--N-------------DLPKGNWFCPSCC---CRICGIGKRKFEEKTEH 421 (670)
Q Consensus 361 dd~C~vC~dg-G~Ll~Cd~Cp~afH~~Cl~l--~-------------~~p~g~W~C~~C~---C~iCg~~~~~~~~~~~~ 421 (670)
...|.+|+.+ +..++|+.|+...|..|+.- + .+-+..|.+-.+. |..|... . ..
T Consensus 116 ~~~c~~~~~~~~~g~~C~~C~~~vh~~C~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~---~----~~ 188 (634)
T KOG1169|consen 116 PKSCGSCGVGIKQGLCCDWCGRTVHERCVRRADPECQCKCDLGRLRKIVLDHPWVKGNAGEAKCDQCLKS---V----KA 188 (634)
T ss_pred cccccchhhcccCceeeccccchHHHHHHhhcCcccccccccccccceeecCcccccccCCccchhhhcc---c----cc
Confidence 3456666655 56899999999999999871 1 1112344444442 2222222 0 01
Q ss_pred cccccccccCcccccccccccccc
Q 005906 422 SVDDVLRICGQCEHNFHVGCIEKS 445 (670)
Q Consensus 422 ~~~~~ll~CdqCer~YH~~Cl~~~ 445 (670)
....+...|.-|-+.+|..|....
T Consensus 189 ~~~~~~~~c~~~~~~~h~~~~~~~ 212 (634)
T KOG1169|consen 189 DQGLTGPRCGWCQIRVHDKCKSEL 212 (634)
T ss_pred cccccccccceeeeeeecchHHHH
Confidence 223346789999999999997653
No 158
>PF15431 TMEM190: Transmembrane protein 190
Probab=22.44 E-value=43 Score=31.29 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=17.1
Q ss_pred cCCCchhHHHHHHHHHhhhceeE
Q 005906 23 KGTQHPALIVNVRRHLKHLGWTI 45 (670)
Q Consensus 23 ~~~~~~~~~~~~~~hl~~~gw~i 45 (670)
-+|||+.|+ |||+=+||||-
T Consensus 49 hQRpDEnmr---rKHmWaL~wtC 68 (134)
T PF15431_consen 49 HQRPDENMR---RKHMWALGWTC 68 (134)
T ss_pred ccCcchhHH---HHHHHHHHHHH
Confidence 488999876 78999999985
No 159
>KOG3581 consensus Creatine kinases [Energy production and conversion]
Probab=22.15 E-value=43 Score=36.29 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=50.7
Q ss_pred ccceeeeccccccCCCCCCCchhHHHHHHhhhhhHHHHHHHHHHhccccccccch----hhhhHHHHHhccCCccccccc
Q 005906 485 DLTWRLLKSMEVRDHHGPSNSKEMEEALMENQSKLSVALDVMHECFEPIKDVLTE----RDLVEDVIFNRRSDLNRLNFQ 560 (670)
Q Consensus 485 ~~sWtLL~~~~~d~~~g~~~~~~~~~~~~E~~skLs~AL~i~~EcF~Pi~D~~Tg----~DlI~~mvy~r~S~~~r~df~ 560 (670)
.+-|+|+..+....+ ....-+.++.-=+.|-++|.+-|+||+..+-+ +|..|.+.++..+.|..+|+.
T Consensus 50 ~~g~tL~d~IqsGv~--------~~d~~VG~yApD~EaY~vFadLFDpiIedyH~Gf~p~~~qp~tdlg~~~~~~~ldpd 121 (363)
T KOG3581|consen 50 PLGATLDDCIQSGVH--------NLDSGVGVYAPDAEAYTVFADLFDPIIEDYHGGFKPTDKQPATDLGKTKEFGGLDPD 121 (363)
T ss_pred CCCCcHHHHHHhCCe--------ehhcccceecCcHHHHHHHHHHhchHHHHHhcCCCccccCCCccCCcccccCCCCCC
Confidence 455777766654331 11111223333356889999999999886652 578899999988899999999
Q ss_pred ccEEE
Q 005906 561 GFYTI 565 (670)
Q Consensus 561 GfYt~ 565 (670)
|-|..
T Consensus 122 ~~yi~ 126 (363)
T KOG3581|consen 122 GKYIL 126 (363)
T ss_pred CceeE
Confidence 99854
No 160
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=21.91 E-value=1.7e+02 Score=22.87 Aligned_cols=36 Identities=8% Similarity=0.089 Sum_probs=31.5
Q ss_pred CCCChHHHHHHhhccCCCchhHHHHHHHHHhhhcee
Q 005906 9 PKFCPEVIRKYLSIKGTQHPALIVNVRRHLKHLGWT 44 (670)
Q Consensus 9 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~hl~~~gw~ 44 (670)
+..++..++.++....+..++.+.+|.+....|||.
T Consensus 9 agvS~~TVSr~ln~~~~vs~~tr~rI~~~a~~lgY~ 44 (46)
T PF00356_consen 9 AGVSKSTVSRVLNGPPRVSEETRERILEAAEELGYR 44 (46)
T ss_dssp HTSSHHHHHHHHTTCSSSTHHHHHHHHHHHHHHTB-
T ss_pred HCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHCCC
Confidence 346788889999999999999999999999999985
No 161
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=21.55 E-value=47 Score=40.13 Aligned_cols=39 Identities=26% Similarity=0.637 Sum_probs=30.4
Q ss_pred CCCCCCCCc------ccccCCCCCCccccccccccccccccCcccccccccccccc
Q 005906 396 GNWFCPSCC------CRICGIGKRKFEEKTEHSVDDVLRICGQCEHNFHVGCIEKS 445 (670)
Q Consensus 396 g~W~C~~C~------C~iCg~~~~~~~~~~~~~~~~~ll~CdqCer~YH~~Cl~~~ 445 (670)
+.|+|..|. |.+|+-. .-+....|.+|++.-|..|+...
T Consensus 767 ~~~~c~rc~s~a~~~CtVC~~v-----------i~G~~~~c~~C~H~gH~sh~~sw 811 (839)
T KOG0269|consen 767 KLWQCDRCESRASAKCTVCDLV-----------IRGVDVWCQVCGHGGHDSHLKSW 811 (839)
T ss_pred cceeechHHHHhhcCceeecce-----------eeeeEeecccccccccHHHHHHH
Confidence 349998883 8888766 23457899999999999998764
No 162
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=21.05 E-value=67 Score=38.52 Aligned_cols=43 Identities=30% Similarity=0.789 Sum_probs=0.0
Q ss_pred eEEecCCCCccCcCCCCCCCCCCCCCCCCCCc-------ccccCCCCCCccccccccccccccccCccccc
Q 005906 373 LVLCDDCPSSFHKSCLVLNDLPKGNWFCPSCC-------CRICGIGKRKFEEKTEHSVDDVLRICGQCEHN 436 (670)
Q Consensus 373 Ll~Cd~Cp~afH~~Cl~l~~~p~g~W~C~~C~-------C~iCg~~~~~~~~~~~~~~~~~ll~CdqCer~ 436 (670)
|+.|-.|... .|++.=||+.|- |..||.. .+...-+|..|+..
T Consensus 1 M~~Cp~Cg~~----------n~~~akFC~~CG~~l~~~~Cp~CG~~-----------~~~~~~fC~~CG~~ 50 (645)
T PRK14559 1 MLICPQCQFE----------NPNNNRFCQKCGTSLTHKPCPQCGTE-----------VPVDEAHCPNCGAE 50 (645)
T ss_pred CCcCCCCCCc----------CCCCCccccccCCCCCCCcCCCCCCC-----------CCcccccccccCCc
No 163
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=20.68 E-value=1.6e+02 Score=25.30 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=22.7
Q ss_pred eccccccchhHHHHHHHHHHHHHhCceeeeccCC
Q 005906 578 RMKHRRLGMCRVLMNELEKLLIELGVERLVLPAV 611 (670)
Q Consensus 578 r~~~RrqGmcr~L~~~IE~lL~~L~Ve~LVLPA~ 611 (670)
...+||||+...||.+.=.....-|.+ |+|.-
T Consensus 31 ~~~~rGqGia~~L~~~~l~~a~~~~~k--v~p~C 62 (78)
T PF14542_consen 31 PPELRGQGIAKKLVEAALDYARENGLK--VVPTC 62 (78)
T ss_dssp -CSSSTTTHHHHHHHHHHHHHHHTT-E--EEETS
T ss_pred CccccCCcHHHHHHHHHHHHHHHCCCE--EEEEC
Confidence 789999999999998877666665543 44443
No 164
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=20.16 E-value=43 Score=29.91 Aligned_cols=31 Identities=42% Similarity=0.827 Sum_probs=19.5
Q ss_pred cCccccccccccccccccccccCCCCCCcccCCcchh
Q 005906 430 CGQCEHNFHVGCIEKSRAINLNNCSQNKWFCSDGCEV 466 (670)
Q Consensus 430 CdqCer~YH~~Cl~~~~~~~l~~~p~~~WfC~~~C~~ 466 (670)
-.+|.+.||..|+... +.. ....=-||- |..
T Consensus 49 ~g~C~H~FH~hCI~kW----l~~-~~~~~~CPm-CR~ 79 (85)
T PF12861_consen 49 WGKCSHNFHMHCILKW----LST-QSSKGQCPM-CRQ 79 (85)
T ss_pred eccCccHHHHHHHHHH----Hcc-ccCCCCCCC-cCC
Confidence 3459999999998764 222 123446776 654
Done!